1356 84 6 0 chr6 4 182 -182415060 + MER4E LTR ERV1 588 766 0 2115 141 33 25 chr6 197 558 -182414684 - THE1B LTR MaLR 0 364 1 229 217 169 12 chr6 723 806 -182414436 - LTR33A LTR ERVL -364 159 64 1772 262 100 23 chr6 859 1629 -182413613 + HAL1 LINE L1 1673 2501 -6 182 273 171 23 chr6 3283 3371 -182411871 + L2 LINE L2 3166 3266 -6 2354 96 0 10 chr6 4049 4361 -182410881 - AluSc SINE Alu 0 309 1 3187 88 31 2 chr6 4848 5301 -182409941 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 5366 5429 -182409813 + (TA)n Simple_repeat Simple_repeat 1 63 0 2222 140 88 25 chr6 5431 5839 -182409403 + Tigger2a DNA MER2_type 1 434 0 474 283 82 22 chr6 6670 6854 -182408388 + L2 LINE L2 3118 3312 -1 1010 283 134 27 chr6 8204 8478 -182406764 - L2 LINE L2 -1 3312 3069 6665 38 48 0 chr6 8478 9312 -182405930 + L1PA5 LINE L1 5273 6146 -8 1010 283 134 27 chr6 9312 9764 -182405478 - L2 LINE L2 -244 3069 2533 241 192 0 0 chr6 10423 10475 -182404767 + L1MC4 LINE L1 6652 6703 -1339 * 252 167 45 0 chr6 10433 10499 -182404743 - L1MCa LINE L1 -4363 2063 1995 2660 67 15 0 chr6 10525 10866 -182404376 - L1PA7 LINE L1 -4 6150 5805 2915 62 11 0 chr6 10866 11238 -182404004 + L1PA7 LINE L1 5415 5790 -364 3746 178 6 1 chr6 11349 12018 -182403224 - L1PA16 LINE L1 -4 6162 5491 438 224 32 45 chr6 12027 12183 -182403059 + L1MC5 LINE L1 5372 5525 -2283 7626 26 3 0 chr6 12188 13236 -182402006 - L1PA3 LINE L1 0 6155 5105 15162 28 0 0 chr6 13238 15038 -182400204 + L1PA3 LINE L1 3311 5110 -1036 878 234 139 28 chr6 15033 15233 -182400009 + L1MC5 LINE L1 5512 5688 -2120 * 2223 129 0 0 chr6 15233 15543 -182399699 + AluSx SINE Alu 1 310 -2 878 234 139 28 chr6 15543 15730 -182399512 + L1MC5 LINE L1 5688 5942 -1866 21 57 0 0 chr6 15746 15781 -182399461 + AT_rich Low_complexity Low_complexity 1 35 0 445 254 51 30 chr6 16284 16579 -182398663 + L1MC5 LINE L1 7346 7646 -315 259 77 19 58 chr6 16575 16627 -182398615 + L1M2 LINE L1 2829 2878 -3971 * 791 197 0 0 chr6 16629 16771 -182398471 + FLAM_C SINE Alu 1 142 -1 22 0 0 0 chr6 16776 16798 -182398444 + AT_rich Low_complexity Low_complexity 1 22 0 1632 222 23 21 chr6 16801 17234 -182398008 + L1 LINE L1 2863 3296 -3552 943 310 51 66 chr6 17239 18194 -182397048 + L1PA12 LINE L1 950 1890 -5691 * 3393 204 8 3 chr6 18192 18973 -182396269 + L1 LINE L1 4523 5308 -843 1034 218 18 65 chr6 19050 19143 -182396099 + Tigger5 DNA MER2_type 1 97 -2226 2278 79 3 7 chr6 19143 19435 -182395807 + AluSc SINE Alu 5 295 -14 1034 218 18 65 chr6 19435 19570 -182395672 + Tigger5 DNA MER2_type 97 218 -2105 * 2097 200 70 8 chr6 19561 20030 -182395212 + Tigger5 DNA MER2_type 1826 2323 0 277 255 112 53 chr6 20032 20487 -182394755 + L1M4 LINE L1 2969 3450 -2696 3459 212 98 64 chr6 20910 22073 -182393169 + L1M4 LINE L1 830 1952 -4692 1100 79 22 11 chr6 22073 22251 -182392991 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3459 212 98 64 chr6 22251 23923 -182391319 + L1M4 LINE L1 1952 3752 -2892 849 247 44 8 chr6 23923 24220 -182391022 + L1M4 LINE L1 5336 5637 -1007 576 269 37 103 chr6 24253 24826 -182390416 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 24870 24942 -182390300 + (TA)n Simple_repeat Simple_repeat 2 75 0 411 303 61 19 chr6 25042 25306 -182389936 + L1MC5 LINE L1 7251 7525 -436 254 236 45 64 chr6 25418 25528 -182389714 + L1ME3 LINE L1 5979 6086 -76 23 65 0 16 chr6 26179 26212 -182389030 + AT_rich Low_complexity Low_complexity 1 34 -27 389 43 0 0 chr6 26212 26259 -182388983 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 26259 26287 -182388955 + AT_rich Low_complexity Low_complexity 34 61 0 376 364 103 23 chr6 27200 27502 -182387740 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 27610 27642 -182387600 + AT_rich Low_complexity Low_complexity 1 32 0 2143 45 15 0 chr6 27702 27968 -182387274 - L1PA5 LINE L1 -4 6150 5881 326 380 60 26 chr6 27971 28205 -182387037 - L2 LINE L2 -606 2708 2467 722 190 92 6 chr6 28454 28617 -182386625 + AluSp SINE Alu 123 299 -14 823 297 60 39 chr6 28793 29228 -182386014 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 29263 29286 -182385956 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3987 207 28 31 chr6 29286 30300 -182384942 - L1 LINE L1 -1449 4697 3687 1187 281 69 32 chr6 30350 31091 -182384151 - L1ME3A LINE L1 -2027 4119 3352 7089 154 30 11 chr6 31125 31256 -182383986 - L1MA8 LINE L1 -53 6238 6111 4867 107 18 1 chr6 31256 31985 -182383257 + L1MA2 LINE L1 5556 6303 -1 7089 154 30 11 chr6 31985 33967 -182381275 - L1MA8 LINE L1 -180 6111 4083 1790 214 76 15 chr6 34121 34597 -182380645 + LTR22 LTR ERVK 1 505 -4 6340 181 2 7 chr6 34637 35671 -182379571 + L1PA15-16 LINE L1 2 1030 -5819 2686 111 24 0 chr6 35671 36084 -182379158 + L1P4 LINE L1 5268 5690 -478 2105 128 0 0 chr6 36086 36376 -182378866 + AluSq SINE Alu 1 290 -23 260 183 21 54 chr6 36389 36482 -182378760 + L1MC4 LINE L1 6614 6703 -1339 2349 122 16 14 chr6 36507 36978 -182378264 + L1PA8 LINE L1 5648 6077 -77 345 198 83 10 chr6 36957 37053 -182378189 + L1PA8 LINE L1 5946 6048 -124 * 349 214 61 10 chr6 37032 37130 -182378112 + L1PA8 LINE L1 5946 6048 -124 * 364 204 61 10 chr6 37109 37207 -182378035 + L1PA8 LINE L1 5946 6048 -124 342 214 61 10 chr6 37186 37284 -182377958 + L1PA8 LINE L1 5946 6048 -124 * 335 214 71 10 chr6 37263 37361 -182377881 + L1PA8 LINE L1 5946 6049 -123 * 331 236 61 10 chr6 37339 37513 -182377729 + L1PA8 LINE L1 5927 6048 -124 * 329 182 78 0 chr6 37492 37569 -182377673 + L1PA8 LINE L1 5946 6028 -144 * 1329 134 28 0 chr6 37569 37785 -182377457 + L1PA10 LINE L1 5946 6167 -1 538 238 85 75 chr6 37810 38247 -182376995 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 38254 38342 -182376900 + GA-rich Low_complexity Low_complexity 3 91 0 767 51 0 0 chr6 38428 38526 -182376716 + L1PA5 LINE L1 6055 6152 -2 3030 205 73 11 chr6 38973 39803 -182375439 + L1 LINE L1 2939 3820 -2326 448 273 86 0 chr6 39810 39949 -182375293 + ERVL LTR ERVL 1690 1840 -3924 1779 224 33 0 chr6 39962 40421 -182374821 + L1MA7 LINE L1 3179 3652 -2494 6090 26 1 0 chr6 40437 41158 -182374084 - L1PA4 LINE L1 -180 5975 5254 1409 51 6 0 chr6 41158 41336 -182373906 + L1PA4 LINE L1 5977 6155 0 5100 160 34 33 chr6 41355 42439 -182372803 + L1MA7 LINE L1 3663 4747 -1399 31748 103 16 58 chr6 43613 50033 -182365209 + L1PA7 LINE L1 12 6153 -1 5044 154 48 12 chr6 50781 52286 -182362956 + L1MA7 LINE L1 4736 6287 -4 303 246 40 16 chr6 52561 52687 -182362555 + L1M4 LINE L1 3559 3687 -2459 * 1034 236 112 32 chr6 52670 53226 -182362016 + L1M4 LINE L1 3913 4512 -1634 403 311 68 15 chr6 56169 56301 -182358941 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 58278 58428 -182356814 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 58436 58485 -182356757 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 58501 58748 -182356494 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 58797 58934 -182356308 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 59780 59864 -182355378 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 61065 61118 -182354124 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 63309 63357 -182351885 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 64026 64171 -182351071 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 64242 64391 -182350851 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 64706 65400 -182349842 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 65414 65681 -182349561 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 65896 66137 -182349105 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 66137 66495 -182348747 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 66495 68059 -182347183 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 68059 68419 -182346823 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 68419 68700 -182346542 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 68700 68796 -182346446 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 69099 69261 -182345981 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 69263 69625 -182345617 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 69762 70064 -182345178 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 70579 70633 -182344609 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 70724 71262 -182343980 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 72383 72778 -182342464 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 72879 73344 -182341898 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 74018 74121 -182341121 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 74511 74617 -182340625 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 74737 74885 -182340357 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 75049 75708 -182339534 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 75708 75901 -182339341 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 75901 76284 -182338958 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 76287 76777 -182338465 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 76778 76865 -182338377 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 77059 77717 -182337525 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 78071 78155 -182337087 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 78243 78624 -182336618 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 79647 79790 -182335452 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 79924 80220 -182335022 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 80292 80366 -182334876 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 81729 81784 -182333458 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 81823 81919 -182333323 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 82062 82103 -182333139 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 82378 82491 -182332751 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 82502 83053 -182332189 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 83216 83516 -182331726 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 84689 84877 -182330365 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 84879 85637 -182329605 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 85771 85799 -182329443 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 86186 86306 -182328936 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 86420 86690 -182328552 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 87131 87236 -182328006 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 87236 87544 -182327698 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 87544 87591 -182327651 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 88031 88324 -182326918 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 88326 88435 -182326807 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 88439 88540 -182326702 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 88541 88647 -182326595 + L1M3f LINE L1 1123 1225 -5104 2247 100 3 23 chr6 88647 88956 -182326286 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 88956 89392 -182325850 + L1M3f LINE L1 1225 2091 -4238 444 150 13 8 chr6 89407 89642 -182325600 + AluSq SINE Alu 1 313 0 2193 109 0 0 chr6 92723 93026 -182322216 - AluSg SINE Alu -7 303 1 1664 181 0 7 chr6 94413 94711 -182320531 - AluJo SINE Alu -16 296 1 353 226 39 49 chr6 94822 94924 -182320318 + MER8 DNA MER2_type 3 103 -136 966 214 0 5 chr6 94924 95111 -182320131 + AluJb SINE Alu 117 302 -10 1183 49 3 38 chr6 95129 95480 -182319762 + (CCCTAA)n Simple_repeat Simple_repeat 1 338 0 801 177 38 16 chr6 95480 95666 -182319576 - TAR1 Satellite telomeric -237 1874 1685 4157 158 28 13 chr6 95685 96859 -182318383 - TAR1 Satellite telomeric -1350 1191 1 891 187 64 132 chr6 96706 97176 -182318066 - LTR60 LTR ERV1 -43 543 106 * 478 217 9 0 chr6 97212 97318 -182317924 - LTR60 LTR ERV1 -479 107 1 1019 227 85 26 chr6 97334 97946 -182317296 + L1MC/D LINE L1 4898 5546 -745 2703 155 46 16 chr6 97957 98517 -182316725 + MER34C LTR ERV1 7 583 -2 518 266 16 11 chr6 98522 98710 -182316532 + L1MC/D LINE L1 5577 5765 -2020 583 143 10 0 chr6 98923 99021 -182316221 + MER72 LTR ERV1 1 99 -623 208 129 32 48 chr6 100933 100995 -182314247 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 193 57 57 0 chr6 101181 101216 -182314026 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 798 276 18 5 chr6 101344 101565 -182313677 + MER58A DNA MER1_type 1 224 0 330 285 124 32 chr6 102263 102449 -182312793 + MIR SINE MIR 54 256 -6 216 0 0 0 chr6 103072 103096 -182312146 + (T)n Simple_repeat Simple_repeat 1 24 0 204 184 0 0 chr6 103978 104027 -182311215 + CT-rich Low_complexity Low_complexity 2 50 0 180 204 102 0 chr6 104880 104929 -182310313 - L2 LINE L2 -71 3201 3148 16323 76 11 5 chr6 106361 107478 -182307764 + L1PA7 LINE L1 3133 4242 -1912 2366 78 0 0 chr6 107478 107786 -182307456 + AluY SINE Alu 1 308 -3 16323 76 11 5 chr6 107786 109586 -182305656 + L1PA7 LINE L1 4242 6059 -95 757 155 88 52 chr6 109576 109770 -182305472 - L1 LINE L1 -1835 4311 4111 * 2102 171 100 23 chr6 109772 109816 -182305426 + L1MB2 LINE L1 5653 5692 -479 2094 95 14 3 chr6 109816 110111 -182305131 - AluY SINE Alu -13 298 1 2102 171 100 23 chr6 110111 110546 -182304696 + L1MB2 LINE L1 5692 6169 -2 364 317 57 0 chr6 110546 110669 -182304573 + L1M4 LINE L1 2336 2465 -3681 5798 95 44 10 chr6 110672 111515 -182303727 + L1PB1 LINE L1 5231 6105 -46 1967 88 74 0 chr6 111515 111798 -182303444 + AluY SINE Alu 1 304 -7 5798 95 44 10 chr6 111798 111846 -182303396 + L1PB1 LINE L1 6105 6150 -1 437 253 43 56 chr6 112572 112734 -182302508 + MIR SINE MIR 67 226 -36 719 220 84 5 chr6 112758 112949 -182302293 + MER46C DNA MER2_type 1 206 -132 1018 174 12 0 chr6 113265 113432 -182301810 - FAM SINE Alu -5 170 2 2279 84 0 3 chr6 113943 114252 -182300990 + AluY SINE Alu 1 308 -3 2000 98 0 69 chr6 114469 114787 -182300455 + AluSg SINE Alu 1 296 -14 2132 124 0 0 chr6 115670 115976 -182299266 + AluSg SINE Alu 1 306 -4 364 208 66 9 chr6 115987 116093 -182299149 + L1MA9 LINE L1 6164 6275 -37 224 54 54 0 chr6 116096 116133 -182299109 + A-rich Low_complexity Low_complexity 3 41 0 21 0 0 0 chr6 117677 117698 -182297544 + AT_rich Low_complexity Low_complexity 1 21 0 797 166 0 22 chr6 118569 118708 -182296534 + AluJo SINE Alu 2 137 -175 881 190 6 11 chr6 118740 118919 -182296323 + AluJo SINE Alu 118 295 -17 2059 157 6 28 chr6 118945 119308 -182295934 + THE1A LTR MaLR 1 355 0 11184 110 16 3 chr6 119308 120868 -182294374 + THE1B-int LTR MaLR 1 1580 0 2100 139 45 31 chr6 120868 121227 -182294015 + THE1B LTR MaLR 1 364 0 1499 181 44 0 chr6 121329 121644 -182293598 + L1M1 LINE L1 4808 5136 -1010 2140 197 75 8 chr6 121647 122125 -182293117 + L1M1 LINE L1 5255 5764 -536 2003 101 4 4 chr6 122602 122878 -182292364 + AluSp SINE Alu 1 276 -37 429 83 28 0 chr6 122878 122950 -182292292 + AluSp/q SINE Alu 238 311 -2 303 261 65 94 chr6 123006 123144 -182292098 - HAL1b LINE L1 -546 802 669 226 153 71 24 chr6 123322 123407 -182291835 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 367 295 86 43 chr6 123545 123684 -182291558 - HAL1b LINE L1 -884 464 320 1970 127 0 3 chr6 123701 123992 -182291250 + AluSq SINE Alu 1 290 -23 2265 96 0 0 chr6 124563 124864 -182290378 + AluSg SINE Alu 1 301 -9 2007 130 3 3 chr6 124931 125238 -182290004 - AluSx SINE Alu -5 307 1 4661 163 86 121 chr6 125267 126069 -182289173 + pTR5 LTR ERV1 5 4294966559 -1451 5286 84 98 7 chr6 126069 126826 -182288416 - LTR12 LTR ERV1 0 826 1 4661 163 86 121 chr6 126826 128201 -182287041 + pTR5 LTR ERV1 -738 682 -32 183 310 35 58 chr6 128283 128370 -182286872 - L3 LINE CR1 -59 1518 1434 2309 72 3 3 chr6 129532 129836 -182285406 + AluSp SINE Alu 1 304 -9 278 253 181 0 chr6 130424 130507 -182284735 + L3 LINE CR1 1356 1453 -124 402 305 222 11 chr6 132549 132828 -182282414 + L1ME4a LINE L1 5721 6058 -63 625 251 98 46 chr6 132841 133184 -182282058 + LTR40c LTR ERVL 27 438 -24 749 207 22 137 chr6 133233 133503 -182281739 - MER8 DNA MER2_type 0 239 1 303 347 65 6 chr6 134009 134179 -182281063 - MIR SINE MIR -82 180 1 2250 60 0 23 chr6 135812 136112 -182279130 - AluY SINE Alu -18 293 1 241 357 51 0 chr6 136136 136234 -182279008 - L2 LINE L2 -38 3234 3132 1276 208 46 74 chr6 137765 138159 -182277083 - MLT1B LTR MaLR -7 383 1 662 191 121 0 chr6 139711 139868 -182275374 - MER45A DNA AcHobo 0 178 3 2029 108 7 3 chr6 140245 140542 -182274700 + AluSc SINE Alu 1 298 -11 598 88 7 51 chr6 140792 140929 -182274313 + (TG)n Simple_repeat Simple_repeat 2 132 0 768 274 91 4 chr6 140984 141214 -182274028 + MIR SINE MIR 2 251 -11 2273 98 0 0 chr6 142045 142342 -182272900 + AluSx SINE Alu 1 297 -15 1277 246 20 6 chr6 142698 143048 -182272194 + L1MB3 LINE L1 4697 5051 -1095 377 236 0 124 chr6 143851 144012 -182271230 + L2 LINE L2 3173 3313 0 928 159 0 14 chr6 144025 144383 -182270859 + (TGGA)n Simple_repeat Simple_repeat 4 354 0 2032 136 0 0 chr6 144458 144752 -182270490 - AluSx SINE Alu -18 294 1 2121 121 0 0 chr6 145333 145631 -182269611 + AluSq SINE Alu 13 310 -3 2171 105 16 0 chr6 146211 146515 -182268727 + AluSc SINE Alu 1 309 0 2174 86 7 10 chr6 146761 147052 -182268190 + AluSx SINE Alu 1 290 -22 1622 153 67 0 chr6 148243 148525 -182266717 - AluSx SINE Alu -11 301 1 2075 113 3 10 chr6 148643 148945 -182266297 - AluSc SINE Alu -9 300 1 2126 172 21 23 chr6 149583 149972 -182265270 - LTR45B LTR ERV1 -98 391 4 319 251 46 0 chr6 149977 150109 -182265133 + L1MB3 LINE L1 5337 5479 -691 1301 209 116 15 chr6 150179 150575 -182264667 + L1MD2 LINE L1 5693 6131 -228 357 202 46 55 chr6 150654 150763 -182264479 + MER5A DNA MER1_type 82 189 0 204 272 67 77 chr6 151095 151290 -182263952 + L2 LINE L2 2252 2444 -870 220 216 27 95 chr6 151597 151671 -182263571 + L2 LINE L2 3201 3269 -3 699 150 9 0 chr6 152000 152124 -182263118 - MER46A DNA MER2_type -5 221 107 837 198 77 0 chr6 152439 152621 -182262621 + MER20 DNA MER1_type 3 198 -21 343 232 84 84 chr6 154079 154234 -182261008 - L1MCa LINE L1 -4342 2084 1930 260 223 27 115 chr6 154526 154546 -182260696 - L2 LINE L2 0 3272 3252 1101 190 68 0 chr6 154546 154767 -182260475 + MER46A DNA MER2_type 1 236 0 260 223 27 115 chr6 154767 154894 -182260348 - L2 LINE L2 -20 3252 3138 * 281 179 0 75 chr6 154887 154954 -182260288 + MIR3 SINE MIR 94 155 -53 1906 138 3 20 chr6 155106 155410 -182259832 - AluSx SINE Alu -13 299 1 2068 116 0 0 chr6 155447 155755 -182259487 + AluSx SINE Alu 1 308 0 244 258 32 0 chr6 156171 156233 -182259009 - MIR SINE MIR -117 145 82 214 208 42 0 chr6 156886 156934 -182258308 + MIR SINE MIR 117 166 -96 283 205 26 51 chr6 159406 159484 -182255758 - L1MC4 LINE L1 -182 7860 7785 2747 200 48 2 chr6 159752 160353 -182254889 + L1MB3 LINE L1 5546 6174 -9 2150 88 7 17 chr6 160353 160649 -182254593 - AluSq SINE Alu -20 293 1 4094 174 88 3 chr6 161188 161948 -182253294 + LTR1B LTR ERV1 2 826 0 482 316 11 27 chr6 162572 162759 -182252483 + MIR SINE MIR 78 261 -1 492 296 106 22 chr6 163353 163579 -182251663 - MIR SINE MIR -1 261 17 2218 97 3 0 chr6 163769 164069 -182251173 - AluSq SINE Alu -12 301 1 228 222 0 0 chr6 164175 164220 -182251022 + MER5A DNA MER1_type 145 189 0 236 164 36 0 chr6 164327 164382 -182250860 + (TA)n Simple_repeat Simple_repeat 2 58 0 345 317 80 30 chr6 165219 165418 -182249824 + MIR SINE MIR 34 242 -20 297 268 110 47 chr6 165508 165635 -182249607 + L2 LINE L2 3122 3256 -16 191 281 61 0 chr6 165880 165962 -182249280 + MIR SINE MIR 23 109 -153 542 218 58 13 chr6 167149 167305 -182247937 - MIR3 SINE MIR -10 198 36 327 252 59 34 chr6 167774 167893 -182247349 - L1M4 LINE L1 -1618 4528 4407 673 243 93 4 chr6 167901 168148 -182247094 - L1MC4 LINE L1 -6 8036 7768 2129 153 19 48 chr6 169498 169910 -182245332 - MER57A LTR ERV1 -3 400 1 2441 202 50 47 chr6 171181 171781 -182243461 - MER7C DNA MER2_type 0 602 1 428 290 32 9 chr6 172292 172438 -182242804 + MER5B DNA MER1_type 32 174 -4 367 281 92 12 chr6 172438 172602 -182242640 + MLT1L LTR MaLR 144 320 -295 196 288 72 39 chr6 173226 173350 -182241892 + MIR3 SINE MIR 51 179 -54 1219 280 77 70 chr6 174280 174920 -182240322 - MER21B LTR ERV1 -196 667 24 270 257 257 0 chr6 175271 175419 -182239823 - MLT1L LTR MaLR -17 598 413 201 304 14 0 chr6 175797 175866 -182239376 + GA-rich Low_complexity Low_complexity 4 73 0 1994 103 46 0 chr6 176010 176292 -182238950 - AluSq SINE Alu -17 296 2 25 0 0 0 chr6 176317 176342 -182238900 + AT_rich Low_complexity Low_complexity 1 25 0 324 274 0 42 chr6 177366 177461 -182237781 + L1MC4 LINE L1 6614 6704 -1338 * 462 322 132 60 chr6 177386 177647 -182237595 - L1MC4a LINE L1 -1834 5974 5733 432 97 0 0 chr6 177647 177709 -182237533 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 177709 178112 -182237130 - L1MC4a LINE L1 -2075 5733 5262 2367 56 0 7 chr6 178566 178872 -182236370 - AluY SINE Alu -7 304 1 286 337 131 29 chr6 179430 179605 -182235637 - MIR3 SINE MIR -7 201 9 3824 90 13 26 chr6 179668 180202 -182235040 - MER1A DNA MER1_type 0 527 1 209 297 62 0 chr6 180435 180499 -182234743 - MIR SINE MIR -74 188 121 1357 205 160 18 chr6 180499 180899 -182234343 + MLT1C LTR MaLR 4 460 -7 200 302 40 79 chr6 180899 181025 -182234217 - MIR3 SINE MIR -73 135 15 200 128 0 26 chr6 181277 181316 -182233926 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2130 115 3 0 chr6 181352 181657 -182233585 - AluSg SINE Alu -4 306 1 2067 103 0 7 chr6 181691 181973 -182233269 + AluSg SINE Alu 1 280 -30 189 259 52 0 chr6 182044 182102 -182233140 - MIR SINE MIR -122 140 80 2145 131 0 0 chr6 182700 183012 -182232230 - AluSx SINE Alu 0 312 1 665 169 0 25 chr6 183221 183381 -182231861 + GA-rich Low_complexity Low_complexity 2 157 0 308 62 0 21 chr6 183489 183537 -182231705 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 350 281 0 0 chr6 183539 183635 -182231607 + CT-rich Low_complexity Low_complexity 1 96 0 506 291 62 39 chr6 184670 185027 -182230215 + L1ME4a LINE L1 5523 5887 -234 2296 72 3 0 chr6 185028 185321 -182229921 - AluSq SINE Alu -19 294 1 926 141 224 0 chr6 186100 186292 -182228950 - L1MA4A LINE L1 -6 6297 6063 1740 122 44 7 chr6 186305 186575 -182228667 + AluSx SINE Alu 30 309 -3 508 273 130 19 chr6 187530 187684 -182227558 - MIR3 SINE MIR -7 201 31 467 226 63 95 chr6 188226 188395 -182226847 + ORSL DNA AcHobo 28 188 -87 2319 75 3 3 chr6 188395 188701 -182226541 - AluSp SINE Alu -7 306 1 467 226 63 95 chr6 188701 188783 -182226459 + ORSL DNA AcHobo 188 271 -4 183 297 203 0 chr6 188848 188922 -182226320 + MIR SINE MIR 118 206 -56 468 159 0 0 chr6 189459 189528 -182225714 + Tigger2 DNA MER2_type 1 69 -2649 * 2332 104 28 11 chr6 189526 189882 -182225360 + Tigger2 DNA MER2_type 2280 2641 -77 10661 134 8 5 chr6 189882 192638 -182222604 + L1MA3 LINE L1 3540 6305 0 443 224 24 0 chr6 192658 192743 -182222499 + Tigger2 DNA MER2_type 2632 2718 0 975 204 91 18 chr6 192791 193065 -182222177 + LTR37A LTR ERV1 98 391 -35 337 195 39 0 chr6 193354 193431 -182221811 - MER116 DNA Mariner 0 80 1 1607 111 0 0 chr6 194261 194486 -182220756 + AluSg/x SINE Alu 88 312 0 6363 196 39 54 chr6 194752 195443 -182219799 - L1MB7 LINE L1 0 6184 5484 2059 90 32 0 chr6 195443 195722 -182219520 - AluSg SINE Alu -22 288 1 6363 196 39 54 chr6 195722 196449 -182218793 - L1MB7 LINE L1 -700 5484 4748 4120 102 17 107 chr6 196449 196773 -182218469 - L1MA3 LINE L1 0 6305 6090 2222 97 0 3 chr6 196773 197071 -182218171 - AluSx SINE Alu -11 301 5 4120 102 17 107 chr6 197071 197519 -182217723 - L1MA3 LINE L1 -215 6090 5603 6363 196 39 54 chr6 197519 198739 -182216503 - L1MB7 LINE L1 -1436 4748 3584 2286 85 3 0 chr6 198739 199034 -182216208 + AluSp SINE Alu 3 298 -15 6363 196 39 54 chr6 199034 199174 -182216068 - L1MB7 LINE L1 -2600 3584 3443 2196 101 0 0 chr6 200967 201263 -182213979 - AluSx SINE Alu -16 296 1 492 267 23 80 chr6 201923 202071 -182213171 + MIR3 SINE MIR 16 154 -54 1424 177 83 3 chr6 202071 202359 -182212883 - AluJo SINE Alu -1 311 1 492 267 23 80 chr6 202359 202386 -182212856 + MIR3 SINE MIR 154 181 -27 189 333 0 25 chr6 203581 203662 -182211580 - MIR3 SINE MIR -7 201 123 2213 110 3 3 chr6 203957 204258 -182210984 - AluSx SINE Alu -11 301 1 24 32 0 0 chr6 204321 204352 -182210890 + AT_rich Low_complexity Low_complexity 1 31 0 1877 128 56 36 chr6 205837 206174 -182209068 - L1PA16 LINE L1 -9 6157 5814 1382 179 0 21 chr6 206200 206434 -182208808 - AluJo SINE Alu -83 229 1 877 125 0 0 chr6 206438 206566 -182208676 - L1PA16 LINE L1 -341 5825 5698 306 218 90 0 chr6 206913 206991 -182208251 - L2 LINE L2 -4 3309 3225 1476 99 54 14 chr6 207093 207314 -182207928 - MER30 DNA MER1_type 0 230 1 9546 209 47 27 chr6 207625 208747 -182206495 - L1MB4 LINE L1 -1 6179 5080 1597 164 70 10 chr6 208747 209046 -182206196 - L1MC1 LINE L1 -1 6332 6016 9546 209 47 27 chr6 209046 209226 -182206016 - L1MB4 LINE L1 -1100 5080 4905 2314 89 0 4 chr6 209226 209567 -182205675 + AluY SINE Alu 3 342 0 9546 209 47 27 chr6 209567 211199 -182204043 - L1MB4 LINE L1 -1275 4905 3306 2262 115 0 0 chr6 211199 211494 -182203748 - AluSc SINE Alu -14 295 1 9546 209 47 27 chr6 211494 211658 -182203584 - L1MB4 LINE L1 -2874 3306 3147 2220 102 0 0 chr6 211658 211968 -182203274 + AluSx SINE Alu 1 310 0 9546 209 47 27 chr6 211968 212540 -182202702 - L1MB4 LINE L1 -3033 3147 2424 21 0 0 0 chr6 212716 212737 -182202505 + AT_rich Low_complexity Low_complexity 1 21 0 1643 243 98 22 chr6 213649 214330 -182200912 + L1ME2 LINE L1 5214 5953 -211 1902 148 7 20 chr6 214348 214651 -182200591 + AluSx SINE Alu 1 299 -13 2497 189 54 69 chr6 214797 215320 -182199922 + L1MC3 LINE L1 6499 7011 -774 5029 28 0 0 chr6 215320 215892 -182199350 + L1PA3 LINE L1 5584 6155 0 2497 189 54 69 chr6 215892 216067 -182199175 + L1MC3 LINE L1 7011 7187 -598 * 8793 218 102 34 chr6 216064 217552 -182197690 - L1M3 LINE L1 -399 6020 4635 189 0 0 0 chr6 217552 217573 -182197669 + (TG)n Simple_repeat Simple_repeat 2 22 0 8793 218 102 34 chr6 217573 217688 -182197554 - L1M3 LINE L1 -1784 4635 4529 348 215 13 0 chr6 217688 217767 -182197475 + MLT1A2 LTR MaLR 1 80 -294 8793 218 102 34 chr6 217767 218246 -182196996 - L1M3 LINE L1 -1890 4529 4084 243 0 0 0 chr6 218246 218273 -182196969 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8793 218 102 34 chr6 218273 218325 -182196917 - L1M3 LINE L1 -2335 4084 4037 2189 92 0 0 chr6 218325 218598 -182196644 - AluSx SINE Alu 0 312 40 8793 218 102 34 chr6 218598 220405 -182194837 - L1M3 LINE L1 -2382 4037 1716 1292 129 119 61 chr6 220405 220715 -182194527 - L1M3 LINE L1 -5052 1332 1005 223 146 42 0 chr6 220715 220763 -182194479 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 220886 220924 -182194318 + AT_rich Low_complexity Low_complexity 1 38 0 835 193 0 0 chr6 220924 221064 -182194178 - L1M3 LINE L1 -5709 675 536 690 215 0 20 chr6 221071 221220 -182194022 - L1M3 LINE L1 -6217 167 22 1107 221 108 65 chr6 221288 221561 -182193681 + MLT1E2 LTR MaLR 211 508 -118 2055 142 7 3 chr6 221561 221870 -182193372 - AluSx SINE Alu -2 310 1 1107 221 108 65 chr6 221870 221995 -182193247 + MLT1E2 LTR MaLR 508 626 0 24 53 0 0 chr6 222435 222473 -182192769 + AT_rich Low_complexity Low_complexity 1 38 0 381 306 95 18 chr6 222575 222797 -182192445 + MIR SINE MIR 7 245 -17 397 165 71 0 chr6 222972 223057 -182192185 - MLT1L LTR MaLR -2 613 523 3746 238 44 14 chr6 223066 224120 -182191122 - L1M4 LINE L1 -1480 4666 3582 356 134 149 0 chr6 224109 224176 -182191066 + L1MB4 LINE L1 5807 5883 -297 * 401 213 64 0 chr6 224189 224283 -182190959 - L1M4 LINE L1 -2553 3593 3494 1770 160 86 54 chr6 224319 224350 -182190892 - L1MB4 LINE L1 -21 6159 6130 2443 93 0 0 chr6 224350 224651 -182190591 - AluSx SINE Alu -11 301 1 1770 160 86 54 chr6 224651 225105 -182190137 - L1MB4 LINE L1 -50 6130 5645 400 186 41 21 chr6 225104 225201 -182190041 - L1MCc LINE L1 -5142 1281 1183 * 1215 229 92 19 chr6 225208 225632 -182189610 - L1MCc LINE L1 -5184 1239 785 802 144 86 0 chr6 225649 225823 -182189419 - MER53 DNA DNA 0 189 1 539 294 73 29 chr6 226333 226605 -182188637 - L1MCc LINE L1 -6086 337 54 926 180 77 0 chr6 227293 227487 -182187755 - MLT1B LTR MaLR -81 309 101 2542 81 0 0 chr6 227575 227882 -182187360 - AluY SINE Alu -4 307 1 288 348 52 40 chr6 228234 228582 -182186660 + L2 LINE L2 2305 2656 -658 298 267 200 13 chr6 228923 229073 -182186169 + MIR SINE MIR 29 206 -56 206 269 0 0 chr6 229100 229152 -182186090 - MIR SINE MIR -25 237 186 181 343 30 20 chr6 229130 229229 -182186013 + L2 LINE L2 2979 3078 -194 * 1427 186 93 21 chr6 229456 229790 -182185452 - MLT1B LTR MaLR -29 361 4 352 210 12 0 chr6 231575 231656 -182183586 + L2 LINE L2 3190 3271 -1 499 247 0 0 chr6 232327 232420 -182182822 + MER81 DNA DNA 2 94 -20 2160 121 0 3 chr6 233544 233841 -182181401 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 233987 234016 -182181226 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 235247 235296 -182179946 + (TC)n Simple_repeat Simple_repeat 2 53 0 218 297 99 0 chr6 235511 235622 -182179620 - L2 LINE L2 -10 3262 3141 842 219 31 0 chr6 236396 236556 -182178686 + MER20 DNA MER1_type 55 219 0 2349 88 0 0 chr6 237220 237515 -182177727 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 237521 237543 -182177699 + AT_rich Low_complexity Low_complexity 1 22 0 327 332 182 23 chr6 238453 238887 -182176355 - L2 LINE L2 0 3313 2811 267 247 111 0 chr6 238893 238974 -182176268 - L2 LINE L2 0 3313 3224 189 0 0 0 chr6 241288 241309 -182173933 + (T)n Simple_repeat Simple_repeat 1 21 0 199 288 0 0 chr6 241789 241848 -182173394 - L2 LINE L2 -9 3304 3246 1232 144 40 104 chr6 241912 242258 -182172984 - MER33 DNA MER1_type 0 324 1 1842 147 0 77 chr6 242984 243310 -182171932 + AluJb SINE Alu 1 301 -11 407 227 117 23 chr6 243799 243927 -182171315 - MIR SINE MIR -87 175 36 259 203 55 78 chr6 244307 244435 -182170807 + 7SK RNA RNA 1 125 -68 183 261 46 31 chr6 244664 244729 -182170513 - MIR3 SINE MIR -3 205 140 * 202 175 38 138 chr6 244716 244796 -182170446 + MIR SINE MIR 121 192 -70 851 215 75 5 chr6 244975 245175 -182170067 - MER20 DNA MER1_type -4 215 2 192 328 16 0 chr6 246298 246359 -182168883 - L2 LINE L2 -39 3233 3172 322 250 10 21 chr6 247575 247671 -182167571 + Charlie8 DNA MER1_type 25 119 -2298 330 254 296 14 chr6 248276 248489 -182166753 - LTR67 LTR ERVL -8 549 277 22 56 0 0 chr6 249402 249438 -182165804 + AT_rich Low_complexity Low_complexity 1 36 0 450 193 203 36 chr6 250237 250554 -182164688 - MER31B LTR ERV1 -8 477 4 183 258 61 15 chr6 251361 251427 -182163815 + MER5A DNA MER1_type 121 189 0 2367 170 22 5 chr6 252165 252611 -182162631 - L1MB3 LINE L1 -1 6182 5729 248 208 65 13 chr6 253711 253788 -182161454 - L1MB3 LINE L1 -467 5654 5574 193 284 25 37 chr6 254074 254155 -182161087 - L2 LINE L2 0 3313 3234 253 227 0 41 chr6 254759 254856 -182160386 + CT-rich Low_complexity Low_complexity 3 95 0 184 214 24 0 chr6 255652 255694 -182159548 - MER5A DNA MER1_type -143 46 4 523 239 22 0 chr6 256162 256296 -182158946 + L1MB7 LINE L1 6035 6171 -13 329 257 46 18 chr6 256722 256831 -182158411 - LTR56 LTR ERV1 -333 112 1 198 274 39 0 chr6 257062 257113 -182158129 + MER5A DNA MER1_type 42 94 -95 360 0 0 0 chr6 257171 257211 -182158031 + (CA)n Simple_repeat Simple_repeat 2 41 0 329 250 117 0 chr6 257296 257416 -182157826 - L1ME4a LINE L1 -175 5946 5813 2022 129 0 7 chr6 257425 257750 -182157492 - AluSx SINE Alu 0 312 1 23 0 0 0 chr6 258217 258240 -182157002 + AT_rich Low_complexity Low_complexity 1 23 0 863 247 109 31 chr6 258432 258845 -182156397 - LTR56 LTR ERV1 0 445 1 2683 36 0 0 chr6 258888 259192 -182156050 + AluY SINE Alu 1 304 -7 22 0 0 0 chr6 260453 260475 -182154767 + AT_rich Low_complexity Low_complexity 1 22 0 231 350 59 21 chr6 262799 262985 -182152257 - MIR3 SINE MIR -13 195 3 355 319 9 9 chr6 263017 263133 -182152109 - L1ME4a LINE L1 -513 5608 5493 225 246 101 14 chr6 263255 263324 -182151918 - L2 LINE L2 -4 3309 3235 208 250 2 50 chr6 263670 263754 -182151488 - MIR SINE MIR -133 75 10 414 324 48 2 chr6 266216 266467 -182148775 + L1MC4a LINE L1 5664 5817 -304 21 0 0 0 chr6 266625 266646 -182148596 + AT_rich Low_complexity Low_complexity 1 21 0 231 259 151 82 chr6 268372 268689 -182146553 - L2 LINE L2 -8 3264 2926 278 344 78 52 chr6 268776 269046 -182146196 - L2 LINE L2 -495 2819 2543 488 312 56 47 chr6 269063 269297 -182145945 + L1M4 LINE L1 2252 2487 -3659 283 265 15 0 chr6 269472 269540 -182145702 - L2 LINE L2 -1025 2289 2221 279 221 53 18 chr6 269548 269661 -182145581 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 300 53 0 0 chr6 270720 270758 -182144484 + (TG)n Simple_repeat Simple_repeat 2 39 0 224 217 14 72 chr6 275475 275544 -182139698 - MIR SINE MIR -7 255 191 236 314 108 0 chr6 275793 275895 -182139347 - MER58B DNA MER1_type -40 301 189 243 292 71 82 chr6 276571 276852 -182138390 - L2 LINE L2 -340 2974 2697 1151 155 52 44 chr6 278046 278263 -182136979 + L1MB3 LINE L1 5921 6142 -41 2265 99 7 3 chr6 278263 278555 -182136687 - AluSg SINE Alu -17 293 1 1151 155 52 44 chr6 278555 278589 -182136653 + L1MB3 LINE L1 6142 6174 -9 226 178 0 22 chr6 280911 280956 -182134286 - L2 LINE L2 -6 3266 3223 215 238 0 0 chr6 281431 281473 -182133769 + T-rich Low_complexity Low_complexity 2 43 0 1332 219 25 9 chr6 284309 284624 -182130618 - MER33 DNA MER1_type 0 324 5 226 229 84 48 chr6 286017 286100 -182129142 + MIR SINE MIR 57 142 -120 822 188 7 0 chr6 286442 286586 -182128656 - L1PB4 LINE L1 -12 6144 6000 257 220 250 20 chr6 288069 288169 -182127073 + MIR SINE MIR 90 212 -50 227 279 163 0 chr6 291303 291389 -182123853 + Charlie8 DNA MER1_type 4 103 -2314 267 306 0 0 chr6 292444 292516 -182122726 + (TG)n Simple_repeat Simple_repeat 1 72 0 1786 179 3 16 chr6 293084 293392 -182121850 - AluJb SINE Alu -8 304 1 221 340 70 10 chr6 293475 293575 -182121667 - MIR3 SINE MIR -94 114 9 1003 155 23 76 chr6 293999 294019 -182121223 + L1MA6 LINE L1 6051 6071 -229 2133 96 45 3 chr6 294019 294311 -182120931 - AluSx SINE Alu -8 304 1 1003 155 23 76 chr6 294311 294554 -182120688 + L1MA6 LINE L1 6071 6300 0 315 0 0 0 chr6 295231 295266 -182119976 + (CA)n Simple_repeat Simple_repeat 2 36 0 227 279 0 0 chr6 295304 295365 -182119877 + MIR SINE MIR 194 254 -8 252 339 24 42 chr6 295893 296061 -182119181 + MER5B DNA MER1_type 13 177 -1 472 298 7 0 chr6 298005 298156 -182117086 + (TG)n Simple_repeat Simple_repeat 1 152 0 1869 142 110 23 chr6 302018 302328 -182112914 + MER1B DNA MER1_type 1 337 0 206 321 74 60 chr6 302421 302636 -182112606 - L2 LINE L2 -212 3060 2843 2025 146 0 0 chr6 303701 303981 -182111261 - AluSx SINE Alu -32 280 1 2291 109 0 3 chr6 305164 305467 -182109775 + AluSq SINE Alu 1 302 -11 347 325 162 0 chr6 306534 306725 -182108517 - MIR SINE MIR -8 254 33 315 0 0 0 chr6 313587 313622 -182101620 + (T)n Simple_repeat Simple_repeat 1 35 0 1131 231 60 36 chr6 314113 314159 -182101083 - L1MB7 LINE L1 0 6184 6141 1929 91 4 0 chr6 314159 314401 -182100841 + AluSp SINE Alu 61 303 -10 1131 231 60 36 chr6 314401 314718 -182100524 - L1MB7 LINE L1 -43 6141 5812 728 200 92 0 chr6 314779 314974 -182100268 + MER20 DNA MER1_type 1 213 -6 426 338 12 12 chr6 316103 316263 -182098979 + (CA)n Simple_repeat Simple_repeat 1 160 0 214 246 17 39 chr6 316309 316488 -182098754 + (CATA)n Simple_repeat Simple_repeat 4 178 0 416 259 43 9 chr6 316590 316706 -182098536 - MIR SINE MIR -111 151 32 2123 117 0 0 chr6 317424 317714 -182097528 - AluSc SINE Alu -19 290 1 272 141 99 14 chr6 317976 318047 -182097195 - L1MA8 LINE L1 -6 6285 6209 * 835 181 18 0 chr6 318043 318214 -182097028 + L1MA8 LINE L1 6049 6222 -69 317 316 105 26 chr6 318836 319102 -182096140 - Charlie7 DNA MER1_type -1926 686 400 326 287 11 0 chr6 319775 319869 -182095373 + (TAG)n Simple_repeat Simple_repeat 2 96 0 456 237 0 0 chr6 319870 320043 -182095199 + (CAG)n Simple_repeat Simple_repeat 2 174 0 507 233 0 0 chr6 320057 320317 -182094925 + (CAG)n Simple_repeat Simple_repeat 1 260 0 471 248 0 0 chr6 320332 320659 -182094583 + (CAG)n Simple_repeat Simple_repeat 1 327 0 459 237 0 0 chr6 320674 320851 -182094391 + (CAG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 320866 321160 -182094082 + (CAG)n Simple_repeat Simple_repeat 1 294 0 504 232 0 0 chr6 321175 321352 -182093890 + (CAG)n Simple_repeat Simple_repeat 2 178 0 495 235 0 0 chr6 321364 321645 -182093597 + (CAG)n Simple_repeat Simple_repeat 1 281 0 452 243 3 5 chr6 321670 322282 -182092960 + (CAG)n Simple_repeat Simple_repeat 1 611 0 291 256 128 0 chr6 322282 322368 -182092874 - MIR SINE MIR 0 262 166 327 264 72 1 chr6 322690 322863 -182092379 + L1MC3 LINE L1 6808 7026 -759 194 270 0 32 chr6 322904 322967 -182092275 + L2 LINE L2 3233 3293 -20 2200 254 89 7 chr6 324327 325025 -182090217 + L1MC4a LINE L1 6747 7501 -307 2484 82 0 22 chr6 325118 325434 -182089808 + AluSc SINE Alu 1 309 0 3640 171 56 8 chr6 325803 326540 -182088702 + L1MA8 LINE L1 5514 6285 -6 1846 111 53 4 chr6 327424 327686 -182087556 + AluSg SINE Alu 34 308 -2 468 301 127 9 chr6 328040 328253 -182086989 - L1ME4a LINE L1 -196 5925 5688 208 351 35 9 chr6 328379 328493 -182086749 - L2 LINE L2 0 3313 3197 635 281 22 17 chr6 334185 334416 -182080826 + HERV16 LTR ERVL 882 1113 -3883 786 127 19 38 chr6 335031 335189 -182080053 - MER53 DNA DNA -34 155 1 687 343 92 13 chr6 335295 335674 -182079568 + LTR16A LTR ERVL 17 425 -25 1737 239 73 14 chr6 335950 336468 -182078774 - MER44D DNA MER2_type -1 604 1 315 312 28 0 chr6 336720 336829 -182078413 + MLT1I LTR MaLR 124 235 -174 248 298 155 25 chr6 338370 338531 -182076711 - MIR SINE MIR -1 261 80 472 262 25 8 chr6 339710 339832 -182075410 + L2 LINE L2 3190 3313 0 1810 81 146 0 chr6 340343 340604 -182074638 - AluSx SINE Alu -13 299 1 22 0 0 0 chr6 341333 341355 -182073887 + GC_rich Low_complexity Low_complexity 1 22 0 201 188 47 16 chr6 341377 341441 -182073801 + (CCCCAG)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr6 342896 342917 -182072325 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 342975 343003 -182072239 + GC_rich Low_complexity Low_complexity 1 28 0 224 293 12 49 chr6 343302 343466 -182071776 + CT-rich Low_complexity Low_complexity 1 158 0 1352 165 99 51 chr6 344003 344276 -182070966 + AluJo SINE Alu 7 292 -20 432 329 7 7 chr6 344925 345062 -182070180 - MER5A DNA MER1_type -9 180 44 291 297 145 22 chr6 347903 348041 -182067201 + MIR3 SINE MIR 26 180 -28 24 53 0 0 chr6 348925 348963 -182066279 + AT_rich Low_complexity Low_complexity 1 38 0 539 245 111 67 chr6 350020 350235 -182065007 - L1ME4a LINE L1 -6 6115 5886 225 0 0 0 chr6 350235 350260 -182064982 + (CA)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 350260 350297 -182064945 - L1ME4a LINE L1 -235 5886 5852 350 305 32 7 chr6 350586 350740 -182064502 + MER103 DNA DNA 8 165 -1 2025 128 0 7 chr6 352191 352472 -182062770 + AluSx SINE Alu 1 279 -33 183 80 0 0 chr6 355202 355227 -182060015 + (TTAGGG)n Simple_repeat Simple_repeat 5 29 0 2454 90 0 0 chr6 355700 356001 -182059241 + AluSg SINE Alu 1 301 -9 23 0 0 0 chr6 356173 356196 -182059046 + AT_rich Low_complexity Low_complexity 1 23 0 1101 133 0 44 chr6 357057 357238 -182058004 - AluSg/x SINE Alu 0 312 140 206 225 0 0 chr6 358571 358611 -182056631 - L2 LINE L2 -4 3268 3229 22 35 0 0 chr6 358706 358735 -182056507 + AT_rich Low_complexity Low_complexity 1 29 0 261 193 174 73 chr6 361788 361897 -182053345 - MER34B LTR ERV1 -441 124 5 7918 187 52 43 chr6 361901 363901 -182051341 - MER34B-int LTR ERV1 0 6331 4314 2469 150 26 5 chr6 363901 364320 -182050922 + MSTA LTR MaLR 1 428 0 3142 141 33 2 chr6 364320 364839 -182050403 + MSTA-int LTR MaLR 1 535 -1116 345 190 40 30 chr6 364934 365034 -182050208 - MER34B-int LTR ERV1 -4937 1394 1294 353 237 36 82 chr6 365373 365567 -182049675 - MER34B-int LTR ERV1 -6078 253 69 446 273 99 37 chr6 365629 365951 -182049291 - MER34B LTR ERV1 -3 562 221 374 270 81 0 chr6 365991 366102 -182049140 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 367314 367354 -182047888 + GA-rich Low_complexity Low_complexity 5 47 0 254 351 114 8 chr6 367503 367634 -182047608 + L2 LINE L2 3100 3244 -28 278 272 198 46 chr6 367691 368015 -182047227 + L1ME4a LINE L1 5744 6116 -5 3737 155 22 10 chr6 369078 369770 -182045472 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 369945 370102 -182045140 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 370351 370488 -182044754 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 370546 370670 -182044572 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 370675 371037 -182044205 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 371161 371196 -182044046 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 371295 371585 -182043657 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 371680 371709 -182043533 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 372460 372487 -182042755 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 374151 375738 -182039504 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 375987 376271 -182038971 - MER63 DNA MER1_type -74 987 676 247 328 74 16 chr6 378246 378368 -182036874 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 379205 379561 -182035681 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 379578 379720 -182035522 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 380026 380127 -182035115 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 380132 380348 -182034894 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 381455 381644 -182033598 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 381876 382391 -182032851 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 382504 382825 -182032417 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 383758 385076 -182030166 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 386227 386306 -182028936 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 386408 387031 -182028211 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 387573 387740 -182027502 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 389252 389331 -182025911 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 389312 389478 -182025764 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 389511 389638 -182025604 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 389665 389823 -182025419 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 389839 389949 -182025293 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 390083 390213 -182025029 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 391703 392005 -182023237 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 393298 393523 -182021719 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 393656 393772 -182021470 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 397188 397244 -182017998 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 397244 397631 -182017611 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 397631 397962 -182017280 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 397999 398051 -182017191 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 398442 398537 -182016705 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 398785 399974 -182015268 + pTR5 LTR ERV1 743 2088 -350 439 226 29 80 chr6 400442 400579 -182014663 + pTR5 LTR ERV1 264 393 -2045 265 284 196 0 chr6 401351 401453 -182013789 + MIR SINE MIR 87 208 -54 3837 235 69 21 chr6 402793 404052 -182011190 - L1MCc LINE L1 -2225 4716 3397 1736 144 37 3 chr6 404053 404352 -182010890 - MER6 DNA MER2_type 0 865 557 2273 177 55 39 chr6 404543 404728 -182010514 - MER6 DNA MER2_type -306 559 378 2329 86 7 7 chr6 404728 405032 -182010210 - AluSc SINE Alu -1 308 5 2273 177 55 39 chr6 405032 405338 -182009904 - MER6 DNA MER2_type -487 378 60 6704 166 18 3 chr6 405364 406508 -182008734 - MSTA-int LTR MaLR -490 1161 1 2522 148 27 0 chr6 406508 406919 -182008323 - MSTA LTR MaLR -2 426 5 341 248 105 30 chr6 406919 407052 -182008190 - L1MCc LINE L1 -4383 2739 2597 6343 88 33 9 chr6 407044 408143 -182007099 - L1PA8 LINE L1 -4 6168 5061 334 280 72 61 chr6 408148 408412 -182006830 - L1MCc LINE L1 -4559 2563 2297 352 296 37 0 chr6 408417 408525 -182006717 - Tigger7 DNA MER2_type -6 2481 2370 668 156 88 47 chr6 408598 408627 -182006615 - Tigger7 DNA MER2_type -79 2408 2382 1146 206 102 93 chr6 408627 409088 -182006154 - MER4C LTR ERV1 0 465 1 668 156 88 47 chr6 409088 409250 -182005992 - Tigger7 DNA MER2_type -105 2382 2209 696 218 8 0 chr6 409255 409388 -182005854 - Tigger7 DNA MER2_type -563 170 37 1862 243 117 44 chr6 409456 409530 -182005712 - L1MCc LINE L1 -4887 1536 1469 217 49 0 49 chr6 409530 409571 -182005671 + (TG)n Simple_repeat Simple_repeat 2 40 0 1862 243 117 44 chr6 409571 410601 -182004641 - L1MCc LINE L1 -4954 1469 814 4262 143 36 14 chr6 410679 411451 -182003791 - L1MA9 LINE L1 -3 6309 5521 451 354 48 9 chr6 411500 411729 -182003513 - L3 LINE CR1 -100 1477 1240 182 318 100 0 chr6 411735 411845 -182003397 - L2 LINE L2 -3 3310 3190 331 244 52 44 chr6 413609 413744 -182001498 + L1ME4a LINE L1 5955 6090 -31 2255 114 0 6 chr6 413957 414272 -182000970 - AluSq SINE Alu 0 313 1 2244 65 14 0 chr6 416457 416732 -181998510 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 417389 417559 -181997683 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 419745 419986 -181995256 + (TA)n Simple_repeat Simple_repeat 1 251 0 2387 84 0 3 chr6 422659 422955 -181992287 + AluSc SINE Alu 1 295 -14 481 126 0 99 chr6 423892 424003 -181991239 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 425165 425295 -181989947 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 425824 425914 -181989328 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 426046 426255 -181988987 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 426264 426298 -181988944 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 426495 427370 -181987872 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 427364 427680 -181987562 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 427770 428070 -181987172 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 428076 428310 -181986932 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 428310 428746 -181986496 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 430260 430993 -181984249 - L1MB8 LINE L1 0 6178 5432 1409 223 113 9 chr6 430993 431543 -181983699 - L1MB8 LINE L1 -940 5206 4574 849 58 53 0 chr6 432811 432982 -181982260 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 432999 433177 -181982065 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 433201 433261 -181981981 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 433735 433896 -181981346 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 434813 434856 -181980386 + (TG)n Simple_repeat Simple_repeat 2 44 0 272 235 13 134 chr6 437483 437632 -181977610 + L1ME LINE L1 13 143 -5927 353 281 113 45 chr6 439607 439828 -181975414 - MIR SINE MIR -14 248 13 21 57 0 0 chr6 440667 440702 -181974540 + AT_rich Low_complexity Low_complexity 1 35 0 500 183 99 47 chr6 441338 441529 -181973713 + L1ME LINE L1 762 962 -5108 * 13058 29 9 2 chr6 441525 443103 -181972139 + L1P LINE L1 2567 4156 -1990 2755 248 72 46 chr6 443097 444874 -181970368 + L1ME LINE L1 729 2552 -3528 * 1399 216 65 30 chr6 444880 445339 -181969903 + L1ME LINE L1 2660 3134 -2946 1809 142 110 23 chr6 446657 446967 -181968275 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 448340 448620 -181966622 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 449803 450106 -181965136 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 450283 450404 -181964838 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 450404 450923 -181964319 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 451018 451118 -181964124 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 451457 451651 -181963591 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 451713 452035 -181963207 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 452075 452186 -181963056 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 453398 453438 -181961804 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 453587 453718 -181961524 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 453775 454070 -181961172 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 455042 455104 -181960138 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 455101 455262 -181959980 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 455236 455367 -181959875 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 455524 455801 -181959441 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 455801 456099 -181959143 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 456099 456506 -181958736 - MER44D DNA MER2_type -2149 338 1 2125 118 7 0 chr6 457993 458297 -181956945 - AluSx SINE Alu -6 306 1 197 275 22 33 chr6 459140 459231 -181956011 + L2 LINE L2 2135 2224 -1090 513 259 107 10 chr6 459723 459928 -181955314 + MIR SINE MIR 9 233 -29 595 200 14 48 chr6 460848 460993 -181954249 - MER4C LTR ERV1 -63 402 263 1253 180 74 77 chr6 461083 461433 -181953809 - MER4A LTR ERV1 -315 349 1 499 258 144 25 chr6 461435 461761 -181953481 - L1M4 LINE L1 -2931 3215 2851 812 153 24 0 chr6 461761 461885 -181953357 + FLAM_C SINE Alu 1 127 -16 250 250 99 128 chr6 461885 462263 -181952979 - L1M4 LINE L1 -3282 2864 2511 2049 110 7 0 chr6 462263 462554 -181952688 - AluSq SINE Alu -20 293 1 250 250 99 128 chr6 462554 462814 -181952428 - L1M4 LINE L1 -3635 2511 2245 301 224 58 24 chr6 463091 463509 -181951733 - L1MD2 LINE L1 0 7808 6165 2092 110 0 0 chr6 464100 464391 -181950851 + AluSg SINE Alu 1 291 -19 467 292 150 36 chr6 564618 565129 -181850113 - L2 LINE L2 0 3313 1016 335 307 63 8 chr6 566065 566192 -181849050 + L3 LINE CR1 1444 1577 0 233 275 50 50 chr6 566266 566346 -181848896 + L2 LINE L2 3144 3223 -49 4187 169 65 29 chr6 566367 567161 -181848081 - MER6 DNA MER2_type -2 863 36 2070 102 39 3 chr6 567161 567444 -181847798 + AluSx SINE Alu 3 295 -17 4187 169 65 29 chr6 567444 567482 -181847760 - MER6 DNA MER2_type -829 36 1 303 143 20 0 chr6 567546 567595 -181847647 - Tigger5 DNA MER2_type -15 2308 2259 * 1251 226 38 7 chr6 567592 567880 -181847362 - Tigger5 DNA MER2_type -2026 297 1 360 267 102 32 chr6 568914 569101 -181846141 + MLT1J2 LTR MaLR 251 450 0 242 29 29 0 chr6 569666 569701 -181845541 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 392 183 0 0 chr6 569839 569910 -181845332 - L1MB8 LINE L1 -1 6177 6107 648 191 27 58 chr6 570036 570224 -181845018 - L1MB8 LINE L1 -21 6157 5976 3376 205 30 6 chr6 570340 571228 -181844014 - L1MB8 LINE L1 -186 5992 5086 2343 92 0 3 chr6 571273 571578 -181843664 - AluY SINE Alu -7 304 1 698 275 60 51 chr6 571664 571998 -181843244 + HAL1b LINE L1 209 545 -803 187 300 17 0 chr6 572102 572162 -181843080 + L2 LINE L2 3176 3236 -77 780 201 50 17 chr6 572278 572457 -181842785 - MER5A DNA MER1_type 0 189 5 542 211 191 27 chr6 572470 572617 -181842625 - MER5B DNA MER1_type -5 173 3 227 350 50 0 chr6 572715 572815 -181842427 + L2 LINE L2 3207 3311 -2 512 316 102 24 chr6 573194 573529 -181841713 + L2 LINE L2 1843 2203 -1111 210 306 241 20 chr6 575534 575733 -181839509 + L3 LINE CR1 356 598 -979 316 341 98 43 chr6 575742 576047 -181839195 + L3 LINE CR1 709 1030 -547 10028 115 9 2 chr6 576550 576858 -181838384 + L1PA10 LINE L1 3956 4260 -1908 2009 154 3 3 chr6 576858 577169 -181838073 - AluSx SINE Alu -1 311 1 10028 115 9 2 chr6 577169 579067 -181836175 + L1PA10 LINE L1 4260 6166 -2 563 125 10 0 chr6 579444 579548 -181835694 + (GA)n Simple_repeat Simple_repeat 1 105 0 391 275 17 0 chr6 579572 579692 -181835550 - L2 LINE L2 0 3313 3192 198 245 51 82 chr6 579800 579898 -181835344 - MIR SINE MIR -63 199 105 23 0 0 0 chr6 580062 580085 -181835157 + AT_rich Low_complexity Low_complexity 1 23 0 2800 103 0 20 chr6 580085 580475 -181834767 - L1PB1 LINE L1 -1 6150 5769 233 267 0 11 chr6 580495 580585 -181834657 - L1MC4 LINE L1 -1340 6702 6614 290 140 35 0 chr6 580585 580642 -181834600 + (TATG)n Simple_repeat Simple_repeat 3 61 0 5060 172 5 5 chr6 580642 582172 -181833070 - L1P5 LINE L1 -360 5791 4262 618 222 12 8 chr6 582270 582520 -181832722 + GA-rich Low_complexity Low_complexity 1 251 0 206 150 0 25 chr6 582631 582671 -181832571 + (CAAG)n Simple_repeat Simple_repeat 1 39 0 * 314 281 0 12 chr6 582649 582731 -181832511 + GA-rich Low_complexity Low_complexity 3 83 0 863 261 114 19 chr6 586005 586330 -181828912 - MLT1J LTR MaLR -131 380 25 2199 100 0 34 chr6 586330 586650 -181828592 + AluSx SINE Alu 1 309 -3 699 256 125 38 chr6 587123 587428 -181827814 + LTR16C LTR ERVL 144 480 -11 1647 201 175 24 chr6 587428 587880 -181827362 - MLT2B1 LTR ERVL 0 520 1 699 256 125 38 chr6 587880 587894 -181827348 + LTR16C LTR ERVL 480 491 0 237 216 157 0 chr6 587958 588009 -181827233 + L2 LINE L2 3239 3297 -16 263 320 69 15 chr6 589442 589645 -181825597 - MLT1C LTR MaLR -7 460 247 1735 57 0 13 chr6 589646 589876 -181825366 - AluY SINE Alu -84 227 1 762 193 66 0 chr6 589895 590061 -181825181 - MLT1D-int LTR MaLR -1193 178 2 293 130 19 37 chr6 590062 590116 -181825126 - MLT2C1 LTR ERVL 0 520 468 1907 154 50 71 chr6 590195 590577 -181824665 + THE1C LTR MaLR 1 374 -1 1640 177 88 9 chr6 590632 590949 -181824293 - MLT2C1 LTR ERVL -48 349 8 2379 55 3 39 chr6 591290 591600 -181823642 - AluY SINE Alu -12 299 1 307 287 85 53 chr6 591636 591824 -181823418 - L1ME4a LINE L1 -2 6119 5926 238 299 43 104 chr6 593322 593553 -181821689 + L2 LINE L2 2695 2911 -403 1602 223 31 77 chr6 593554 594075 -181821167 - MLT1D LTR MaLR 0 505 9 196 229 0 100 chr6 594163 594233 -181821009 + L2 LINE L2 3158 3220 -93 650 267 32 45 chr6 594674 594921 -181820321 - LTR33 LTR ERVL 0 521 278 711 285 38 29 chr6 594968 595308 -181819934 + L1M4 LINE L1 3101 3443 -2703 299 232 14 0 chr6 596570 596639 -181818603 - LTR33 LTR ERVL -26 495 426 310 42 42 0 chr6 596720 596768 -181818474 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 228 176 0 0 chr6 596991 597042 -181818200 - LTR33 LTR ERVL -470 51 1 2108 128 0 0 chr6 597688 597995 -181817247 + AluSq SINE Alu 1 307 0 261 114 63 13 chr6 598316 598395 -181816847 + CT-rich Low_complexity Low_complexity 2 84 0 822 295 93 42 chr6 599276 599813 -181815429 + L1M4 LINE L1 3863 4450 -1696 2400 72 7 0 chr6 599813 600105 -181815137 + AluSp SINE Alu 1 294 -19 822 295 93 42 chr6 600105 600310 -181814932 + L1M4 LINE L1 4450 4643 -1503 229 191 95 16 chr6 600321 600384 -181814858 - LTR13 LTR ERVK -698 309 242 761 225 34 49 chr6 600442 600709 -181814533 + LTR13 LTR ERVK 1 263 -744 22 0 0 0 chr6 602808 602830 -181812412 + AT_rich Low_complexity Low_complexity 1 22 0 229 318 120 54 chr6 603923 604165 -181811077 - L2 LINE L2 -398 2916 2659 201 121 0 0 chr6 604419 604452 -181810790 + (GA)n Simple_repeat Simple_repeat 2 34 0 194 150 25 0 chr6 604452 604492 -181810750 + (TA)n Simple_repeat Simple_repeat 1 41 0 1234 116 32 26 chr6 605123 605312 -181809930 - L1PA15 LINE L1 -7 6158 5969 2235 228 82 14 chr6 605449 606036 -181809206 - L1ME3 LINE L1 0 6162 5536 934 153 23 6 chr6 606371 606547 -181808695 - L1MA4 LINE L1 -4 6296 6118 1209 215 27 5 chr6 606818 607037 -181808205 - MER58A DNA MER1_type 0 224 1 308 336 55 48 chr6 607124 607270 -181807972 - L1ME2 LINE L1 -287 5877 5731 417 246 84 14 chr6 607270 607412 -181807830 + MIR SINE MIR 111 262 0 652 306 52 29 chr6 607609 608053 -181807189 + L1ME3 LINE L1 4590 5043 -1103 12537 126 13 36 chr6 608166 610265 -181804977 + Tigger1 DNA MER2_type 1 2018 -400 1913 103 3 94 chr6 610265 610584 -181804658 + AluSq SINE Alu 1 290 -23 12537 126 13 36 chr6 610584 610785 -181804457 + Tigger1 DNA MER2_type 2018 2222 -196 260 174 31 10 chr6 610791 610889 -181804353 + (TA)n Simple_repeat Simple_repeat 1 100 0 881 136 65 0 chr6 610894 611048 -181804194 + Tigger1 DNA MER2_type 2255 2418 0 950 295 102 31 chr6 611069 611263 -181803979 + L1ME3 LINE L1 5258 5437 -725 2203 132 3 0 chr6 611263 611751 -181803491 + AluSq SINE Alu 1 313 0 950 295 102 31 chr6 611751 612142 -181803100 + L1ME3 LINE L1 5437 5885 -277 35 41 0 0 chr6 612389 612438 -181802804 + AT_rich Low_complexity Low_complexity 1 49 0 2440 48 3 0 chr6 614085 614377 -181800865 + AluY SINE Alu 1 293 -18 925 138 0 0 chr6 614477 614607 -181800635 - AluSp SINE Alu -183 130 1 2075 96 15 4 chr6 614929 615201 -181800041 + AluSq SINE Alu 27 301 -12 345 273 50 22 chr6 615201 615340 -181799902 + MARNA DNA Mariner 411 553 -33 520 304 42 51 chr6 615600 616051 -181799191 + L2 LINE L2 2867 3313 0 555 260 19 7 chr6 617594 617748 -181797494 - L2 LINE L2 -5 3308 3153 470 336 38 19 chr6 617841 618052 -181797190 + MIR SINE MIR 22 236 -26 234 0 0 0 chr6 620673 620699 -181794543 + (TC)n Simple_repeat Simple_repeat 1 26 0 219 250 0 0 chr6 623109 623177 -181792065 + GA-rich Low_complexity Low_complexity 5 72 0 1501 172 41 28 chr6 623247 623538 -181791704 + AluJo SINE Alu 3 297 -15 989 145 6 52 chr6 623614 623786 -181791456 - AluJb SINE Alu -17 295 132 5713 139 3 0 chr6 623786 624899 -181790343 - L1PA14 LINE L1 0 6161 5047 3104 168 2 0 chr6 624902 625450 -181789792 + L1P LINE L1 3988 4536 -1610 366 284 31 89 chr6 625774 626066 -181789176 - LTR16C LTR ERVL -109 382 108 2616 68 0 0 chr6 626367 626676 -181788566 + AluY SINE Alu 1 309 -2 664 213 27 19 chr6 627278 627457 -181787785 + MER5A DNA MER1_type 3 189 0 280 274 168 58 chr6 628969 629279 -181785963 + L2 LINE L2 1653 1996 -1318 1322 166 200 10 chr6 629298 629476 -181785766 + MER7A DNA MER2_type 4 147 -2891 1489 102 56 0 chr6 629476 629691 -181785551 + MER30 DNA MER1_type 2 228 -2 1322 166 200 10 chr6 629691 629802 -181785440 + MER7A DNA MER2_type 147 346 0 211 328 74 0 chr6 630037 630159 -181785083 + L2 LINE L2 2680 2810 -504 241 291 134 34 chr6 630229 630497 -181784745 + L2 LINE L2 2935 3229 -84 1241 185 161 24 chr6 630982 631323 -181783919 - MLT1B LTR MaLR 0 390 3 2429 88 0 3 chr6 631352 631658 -181783584 + AluSq SINE Alu 1 305 -8 251 290 107 0 chr6 632210 632341 -181782901 + L2 LINE L2 1976 2120 -1194 526 299 57 10 chr6 632377 632571 -181782671 + L2 LINE L2 2238 2440 -874 550 254 109 16 chr6 632584 632777 -181782465 - MIR SINE MIR 0 262 52 318 328 154 17 chr6 632860 633275 -181781967 + L2 LINE L2 2474 2945 -369 508 314 42 29 chr6 633334 633719 -181781523 + L2 LINE L2 2924 3313 0 343 246 69 23 chr6 635755 635885 -181779357 - L2 LINE L2 0 3272 3137 260 250 0 0 chr6 636764 636828 -181778414 - MLT1I LTR MaLR 0 409 346 339 231 13 0 chr6 637217 637295 -181777947 + MIR3 SINE MIR 113 191 -17 5178 20 3 3 chr6 637743 638334 -181776908 + L1PA3 LINE L1 5565 6155 0 22 35 0 0 chr6 640249 640278 -181774964 + AT_rich Low_complexity Low_complexity 1 29 0 219 259 0 0 chr6 643331 643416 -181771826 + (TG)n Simple_repeat Simple_repeat 1 85 0 192 253 0 0 chr6 643450 643525 -181771717 + (TATG)n Simple_repeat Simple_repeat 4 78 0 426 318 17 6 chr6 643527 643700 -181771542 + (TG)n Simple_repeat Simple_repeat 1 175 0 25 51 0 0 chr6 644520 644559 -181770683 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 644929 644951 -181770291 + AT_rich Low_complexity Low_complexity 1 22 0 2421 97 0 0 chr6 647527 647838 -181767404 + AluY SINE Alu 1 311 0 284 339 46 9 chr6 647862 647971 -181767271 - MIR3 SINE MIR -9 199 87 308 205 212 40 chr6 650032 650183 -181765059 - L2 LINE L2 -11 3302 3126 1395 165 4 16 chr6 651213 651455 -181763787 + AluJo SINE Alu 54 292 -20 464 244 289 29 chr6 651519 651834 -181763408 - LTR16C LTR ERVL -10 481 85 376 321 54 29 chr6 652016 652296 -181762946 - ERVL LTR ERVL -384 5380 5094 252 346 48 18 chr6 652539 652767 -181762475 - ERVL LTR ERVL -1120 4644 4410 2258 98 7 7 chr6 653522 653828 -181761414 - AluSc SINE Alu -3 306 1 467 219 89 0 chr6 653859 653982 -181761260 + MER94 DNA DNA 1 134 0 1067 288 151 12 chr6 654058 654742 -181760500 + L2 LINE L2 1015 1793 -1521 523 138 92 28 chr6 654745 654854 -181760388 - MER53 DNA DNA -2 187 72 2867 161 205 20 chr6 654865 655474 -181759768 - pTR5 LTR ERV1 0 2438 1717 2206 144 108 2 chr6 657802 658199 -181757043 - Tigger2 DNA MER2_type 0 2718 2280 415 174 14 0 chr6 658196 658265 -181756977 + MER8 DNA MER2_type 170 239 0 * 308 161 54 0 chr6 658504 658560 -181756682 + L2 LINE L2 3214 3272 0 1904 128 24 0 chr6 658815 659104 -181756138 - AluYa5 SINE Alu -15 296 1 1391 226 7 3 chr6 659175 659458 -181755784 - AluJo SINE Alu -28 284 1 183 217 0 43 chr6 660416 660462 -181754780 + MIR SINE MIR 204 247 -15 368 368 162 25 chr6 660974 661821 -181753421 + L2 LINE L2 959 1921 -1393 249 269 103 13 chr6 661819 661897 -181753345 + L2 LINE L2 3229 3313 0 * 1996 114 10 33 chr6 662058 662364 -181752878 + AluJo SINE Alu 10 308 -4 2193 80 35 7 chr6 663271 663557 -181751685 + AluSg SINE Alu 1 294 -16 414 51 0 0 chr6 663604 663663 -181751579 + AluSc SINE Alu 245 303 -6 225 0 0 0 chr6 664380 664405 -181750837 + (TG)n Simple_repeat Simple_repeat 2 26 0 211 338 0 0 chr6 665303 665374 -181749868 + C-rich Low_complexity Low_complexity 6 76 0 488 174 31 39 chr6 666678 666869 -181748373 - L1MB7 LINE L1 -66 6114 5889 2428 76 0 3 chr6 667033 667337 -181747905 + AluY SINE Alu 1 303 -8 22 56 0 0 chr6 667982 668018 -181747224 + AT_rich Low_complexity Low_complexity 1 36 0 419 246 123 35 chr6 669299 669502 -181745740 + L1MC5 LINE L1 7711 7931 -30 302 253 53 0 chr6 669528 669603 -181745639 + MIR SINE MIR 34 112 -150 358 330 89 65 chr6 669769 670296 -181744946 - L1ME LINE L1 -315 5806 5267 26 50 0 0 chr6 670510 670550 -181744692 + AT_rich Low_complexity Low_complexity 1 40 0 276 255 128 10 chr6 671172 671274 -181743968 - MIR SINE MIR -72 190 77 279 0 0 0 chr6 671567 671598 -181743644 + (TG)n Simple_repeat Simple_repeat 1 31 0 282 281 305 0 chr6 671598 671762 -181743480 + MIR SINE MIR 13 226 -36 1723 98 0 0 chr6 671766 671981 -181743261 + AluSg SINE Alu 1 215 -95 22 35 0 0 chr6 672105 672134 -181743108 + AT_rich Low_complexity Low_complexity 1 29 0 1410 171 209 31 chr6 674332 674776 -181740466 - MER74A LTR ERVL -2 556 34 288 0 0 0 chr6 674788 674820 -181740422 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1089 135 17 97 chr6 675534 675771 -181739471 + Tigger1 DNA MER2_type 1 218 -2200 2064 112 36 7 chr6 676251 676555 -181738687 - AluSq SINE Alu 0 313 1 641 196 21 21 chr6 676688 676831 -181738411 + L1MCa LINE L1 12 154 -6272 * 891 211 11 6 chr6 676827 677007 -181738235 + L1MCa LINE L1 79 259 -6167 * 3146 190 77 31 chr6 677005 677603 -181737639 + L1MCa LINE L1 776 1345 -5081 194 0 39 0 chr6 677603 677629 -181737613 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 677629 678030 -181737212 + L1MCa LINE L1 1345 1916 -4510 1751 159 152 42 chr6 678127 678155 -181737087 + Charlie1 DNA MER1_type 578 602 -2159 1847 134 78 0 chr6 678155 678458 -181736784 - AluSx SINE Alu 0 312 1 909 165 0 0 chr6 678466 678599 -181736643 - FLAM_A SINE Alu 0 133 1 1751 159 152 42 chr6 678599 678970 -181736272 + Charlie1 DNA MER1_type 608 1031 -1730 24 0 0 0 chr6 679028 679052 -181736190 + AT_rich Low_complexity Low_complexity 1 24 0 906 201 50 30 chr6 680559 680858 -181734384 - MER2 DNA MER2_type 0 345 6 1149 205 115 0 chr6 681294 681572 -181733670 + L1MCa LINE L1 1302 1611 -4815 2936 164 32 26 chr6 681574 681612 -181733630 - MLT2B3 LTR ERVL 0 554 518 447 19 0 0 chr6 681612 681664 -181733578 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 681664 682161 -181733081 - MLT2B3 LTR ERVL -36 518 16 2145 164 118 27 chr6 682170 682694 -181732548 + L1MCa LINE L1 1713 2284 -4142 1609 140 43 37 chr6 682694 682994 -181732248 + L1MC2 LINE L1 6025 6326 -18 759 298 58 0 chr6 683374 683582 -181731660 - MER58A DNA MER1_type -3 221 2 12413 202 81 31 chr6 683589 685314 -181729928 - L1PB1 LINE L1 -2 6865 5227 189 0 0 0 chr6 685314 685335 -181729907 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 12413 202 81 31 chr6 685335 686521 -181728721 - L1PB1 LINE L1 -1640 5227 4101 881 118 0 0 chr6 686521 686640 -181728602 - AluSg/x SINE Alu -15 297 179 12413 202 81 31 chr6 686640 690124 -181725118 - L1PB1 LINE L1 -2766 4101 51 321 182 171 0 chr6 690127 690215 -181725027 + MER106B DNA MER1_type 957 1059 0 236 331 21 14 chr6 690241 690389 -181724853 + L1P LINE L1 4077 4232 -1914 2375 98 0 0 chr6 690565 690860 -181724382 + AluSq SINE Alu 1 295 -18 260 27 27 0 chr6 690860 690897 -181724345 + (TA)n Simple_repeat Simple_repeat 2 39 0 449 290 60 33 chr6 690936 691119 -181724123 - L2 LINE L2 0 3313 3126 581 245 153 38 chr6 691808 692155 -181723087 + L1ME4a LINE L1 5533 5919 -202 14926 132 27 17 chr6 694030 694696 -181720546 - Tigger1 DNA MER2_type -1 2417 1759 2140 136 0 13 chr6 694696 695012 -181720230 - AluJo SINE Alu 0 312 1 14926 132 27 17 chr6 695012 696732 -181718510 - Tigger1 DNA MER2_type -659 1759 7 2381 91 0 0 chr6 697458 697754 -181717488 - AluSg SINE Alu -14 296 1 2035 140 3 0 chr6 697828 698158 -181717084 - AluSx SINE Alu 0 312 1 2393 75 0 16 chr6 698197 698502 -181716740 + AluY SINE Alu 1 300 -11 244 283 109 36 chr6 699178 699316 -181715926 - MIR3 SINE MIR -23 185 38 22 0 0 0 chr6 699413 699435 -181715807 + AT_rich Low_complexity Low_complexity 1 22 0 947 201 0 0 chr6 700341 700510 -181714732 + FAM SINE Alu 1 169 -6 1799 138 57 27 chr6 700517 700813 -181714429 + AluJo SINE Alu 1 305 -7 310 244 49 0 chr6 701339 701421 -181713821 - L2 LINE L2 -5 3308 3223 252 345 101 14 chr6 701996 702135 -181713107 + MIR3 SINE MIR 47 197 -11 323 244 2 0 chr6 703026 703118 -181712124 - L1MC4 LINE L1 0 8042 7681 765 227 74 29 chr6 703130 703372 -181711870 - L1MC4 LINE L1 -55 7987 7735 674 217 91 11 chr6 703373 703548 -181711694 + L1MC4 LINE L1 7392 7580 -462 1156 201 225 0 chr6 703556 703889 -181711353 - L1MC4 LINE L1 -1040 7002 6595 * 5909 222 167 31 chr6 703883 706503 -181708739 - L1M4 LINE L1 -778 5368 2392 278 274 49 20 chr6 706518 706620 -181708622 - L1MEc LINE L1 -4648 1748 1644 619 253 32 58 chr6 706689 707001 -181708241 - L1MEc LINE L1 -5090 1115 812 708 196 106 32 chr6 707011 707200 -181708042 - MER21B LTR ERV1 -1 862 660 555 245 77 77 chr6 707963 708249 -181706993 - MER21B LTR ERV1 -573 290 5 262 284 116 53 chr6 708267 708492 -181706750 - HAL1 LINE L1 -145 2362 2124 1862 153 24 66 chr6 708655 709035 -181706207 - MLT1B LTR MaLR -2 388 25 356 260 103 113 chr6 709098 709171 -181706071 - HAL1 LINE L1 -1591 916 844 3800 136 71 5 chr6 709171 709774 -181705468 + LTR48B LTR ERV1 1 643 -1 356 260 103 113 chr6 709774 710000 -181705242 - HAL1 LINE L1 -1663 844 620 2313 90 7 0 chr6 710578 710878 -181704364 - AluSg SINE Alu -7 303 2 340 354 31 10 chr6 710889 711105 -181704137 - MIR SINE MIR -13 249 3 2242 103 0 6 chr6 713438 713749 -181701493 - AluSc SINE Alu 0 309 1 31 68 0 0 chr6 714730 714789 -181700453 + AT_rich Low_complexity Low_complexity 1 59 0 1914 129 0 60 chr6 715146 715463 -181699779 + AluJb SINE Alu 2 299 -13 300 307 181 0 chr6 717171 717376 -181697866 + MIR SINE MIR 17 258 -4 22 0 0 0 chr6 717632 717654 -181697588 + AT_rich Low_complexity Low_complexity 1 22 0 180 219 0 0 chr6 717689 717730 -181697512 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2358 90 0 19 chr6 717960 718272 -181696970 - AluSg SINE Alu -4 306 1 570 287 123 0 chr6 721270 721465 -181693777 + MIR SINE MIR 34 252 -10 772 215 41 0 chr6 721710 721882 -181693360 - LTR37A LTR ERV1 0 426 248 195 42 0 0 chr6 722262 722286 -181692956 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr6 722521 722542 -181692700 + AT_rich Low_complexity Low_complexity 1 21 0 2315 88 0 3 chr6 722637 722931 -181692311 + AluSx SINE Alu 1 293 -19 204 40 0 0 chr6 723989 724014 -181691228 + (A)n Simple_repeat Simple_repeat 1 25 0 185 213 187 27 chr6 724934 725009 -181690233 + MIR SINE MIR 105 191 -71 384 258 273 10 chr6 725059 725257 -181689985 - MIR SINE MIR 0 262 13 275 314 34 25 chr6 727383 727501 -181687741 - MER117 DNA MER1_type -43 154 36 24 0 0 0 chr6 732529 732553 -181682689 + AT_rich Low_complexity Low_complexity 1 24 0 1236 105 17 6 chr6 732596 732800 -181682442 + AluSc SINE Alu 106 311 0 2690 23 0 0 chr6 732906 733207 -181682035 - AluY SINE Alu -9 302 2 379 287 43 28 chr6 733538 733771 -181681471 - L1MC5 LINE L1 -218 7824 7501 1329 112 0 0 chr6 733784 733962 -181681280 - AluSg/x SINE Alu -4 308 131 405 207 18 36 chr6 733983 734094 -181681148 - L1MC5 LINE L1 -483 7478 7370 336 111 0 0 chr6 734309 734363 -181680879 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 57 0 0 chr6 734772 734807 -181680435 + AT_rich Low_complexity Low_complexity 1 35 0 1890 236 68 23 chr6 734930 735443 -181679799 - MER77 LTR ERV1 -10 595 60 205 50 25 25 chr6 735607 735647 -181679595 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1220 15 0 0 chr6 735648 735778 -181679464 - L1PA4 LINE L1 -13 6142 6013 201 74 0 0 chr6 736063 736090 -181679152 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 598 225 191 0 chr6 737188 737361 -181677881 + MER58C DNA MER1_type 1 206 -9 1284 144 42 14 chr6 738839 739054 -181676188 - MER46A DNA MER2_type -15 221 1 749 148 6 42 chr6 741828 742000 -181673242 + MER3 DNA MER1_type 1 209 0 626 320 61 4 chr6 742047 742275 -181672967 - MIR SINE MIR -5 257 17 2839 240 97 9 chr6 742277 743069 -181672173 + Tigger6a DNA MER2_type 1 862 -221 3541 47 0 0 chr6 743102 743507 -181671735 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 743507 744126 -181671116 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 744126 744345 -181670897 + Tigger6a DNA MER2_type 850 1081 -2 337 339 58 37 chr6 745387 745576 -181669666 + MIR SINE MIR 49 241 -21 278 342 57 25 chr6 745699 745857 -181669385 - L2 LINE L2 -1063 2251 2089 469 255 75 70 chr6 745868 746068 -181669174 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 751162 751347 -181663895 - L1ME2 LINE L1 0 6164 5963 2283 84 0 24 chr6 752050 752348 -181662894 + AluSg SINE Alu 1 291 -19 471 298 54 0 chr6 752428 752596 -181662646 + MIR SINE MIR 76 252 -10 1715 181 11 0 chr6 752866 753153 -181662089 + AluJo SINE Alu 4 293 -19 229 311 37 30 chr6 753613 753748 -181661494 - MIR3 SINE MIR -6 202 67 2062 128 0 28 chr6 756465 756786 -181658456 - AluSx SINE Alu 0 312 1 180 261 22 0 chr6 757371 757417 -181657825 - L2 LINE L2 -25 3247 3201 406 316 153 54 chr6 757764 758847 -181656395 - L2 LINE L2 -22 3250 2028 21 0 0 0 chr6 759215 759236 -181656006 + AT_rich Low_complexity Low_complexity 1 21 0 302 229 60 131 chr6 759360 759398 -181655844 + MER5B DNA MER1_type 6 45 -133 2432 50 0 30 chr6 759398 759699 -181655543 - AluY SINE Alu -13 298 7 302 229 60 131 chr6 759699 759843 -181655399 + MER5B DNA MER1_type 45 175 -3 262 293 71 10 chr6 760036 760135 -181655107 - L2 LINE L2 -213 3059 2955 2080 107 7 24 chr6 760878 761176 -181654066 + AluSg SINE Alu 1 293 -17 699 209 68 80 chr6 761401 761727 -181653515 - L1MC5 LINE L1 -28 7933 7612 2429 71 0 0 chr6 761986 762281 -181652961 + AluY SINE Alu 1 295 -16 23 33 0 0 chr6 765427 765457 -181649785 + AT_rich Low_complexity Low_complexity 1 30 0 255 125 0 0 chr6 766762 766802 -181648440 + (TA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 766886 766906 -181648336 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 2148 113 3 10 chr6 768217 768518 -181646724 - AluSx SINE Alu -13 299 1 211 280 40 13 chr6 768735 768810 -181646432 - MIR3 SINE MIR 0 208 132 2209 130 0 0 chr6 769190 769490 -181645752 + AluSg SINE Alu 1 300 -10 21 95 0 0 chr6 770473 770536 -181644706 + AT_rich Low_complexity Low_complexity 1 63 0 521 264 39 19 chr6 771098 771253 -181643989 + L2 LINE L2 3156 3313 0 23 68 0 0 chr6 771336 771380 -181643862 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr6 772503 772524 -181642718 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 772925 772959 -181642283 + AT_rich Low_complexity Low_complexity 1 34 0 1726 92 78 163 chr6 773806 774107 -181641135 - MSTB LTR MaLR 0 426 176 1581 109 17 0 chr6 774107 774346 -181640896 - MER75B DNA T2_type 0 243 1 1726 92 78 163 chr6 774346 774503 -181640739 - MSTB LTR MaLR -250 176 7 218 263 105 94 chr6 774694 774865 -181640377 + L2 LINE L2 3136 3308 -5 628 313 86 48 chr6 775190 775749 -181639493 + L1MC4a LINE L1 5535 6114 -1694 58 60 0 0 chr6 775790 775890 -181639352 + AT_rich Low_complexity Low_complexity 1 100 0 394 243 189 0 chr6 777157 777268 -181637974 + MIR SINE MIR 64 195 -67 350 230 355 7 chr6 778764 778916 -181636326 + MIR SINE MIR 58 262 0 185 318 0 61 chr6 778926 778992 -181636250 + L2 LINE L2 3234 3295 -18 2519 62 0 0 chr6 779097 779402 -181635840 + AluY SINE Alu 1 305 -6 814 262 74 68 chr6 780925 781436 -181633806 - MLT2B1 LTR ERVL -6 514 1 382 283 23 28 chr6 781799 781976 -181633266 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 33 0 0 0 chr6 782038 782071 -181633171 + AT_rich Low_complexity Low_complexity 1 33 0 250 324 0 0 chr6 782130 782241 -181633001 - L2 LINE L2 -254 3059 2949 635 302 215 6 chr6 782383 782876 -181632366 - L2 LINE L2 -608 2706 2111 226 315 240 0 chr6 783157 783303 -181631939 + L2 LINE L2 2603 2783 -531 21 0 0 0 chr6 783483 783504 -181631738 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 783941 783963 -181631279 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr6 784548 784599 -181630643 + AT_rich Low_complexity Low_complexity 1 51 0 200 273 0 0 chr6 785072 785127 -181630115 + CT-rich Low_complexity Low_complexity 3 57 0 318 243 111 62 chr6 785715 785958 -181629284 + L1ME4a LINE L1 5832 6086 -35 2277 83 14 0 chr6 787648 787938 -181627304 + AluSc SINE Alu 1 294 -15 243 221 26 39 chr6 788097 788174 -181627068 + MER8 DNA MER2_type 2 77 -162 28 86 0 0 chr6 788451 788521 -181626721 + AT_rich Low_complexity Low_complexity 1 70 0 2386 92 0 3 chr6 788522 788828 -181626414 + AluSq SINE Alu 1 305 -8 384 229 47 84 chr6 788944 789158 -181626084 + Charlie5 DNA MER1_type 2419 2624 0 2223 101 3 16 chr6 790692 791000 -181624242 - AluSx SINE Alu -8 304 1 273 299 133 88 chr6 791657 791883 -181623359 + L2 LINE L2 2849 3063 -250 2499 74 0 3 chr6 791883 792192 -181623050 - AluSc SINE Alu -1 308 1 273 299 133 88 chr6 792192 792387 -181622855 + L2 LINE L2 3063 3289 -24 2241 92 0 7 chr6 795190 795484 -181619758 + AluSg SINE Alu 1 292 -18 243 103 0 0 chr6 796113 796152 -181619090 + (CA)n Simple_repeat Simple_repeat 2 40 0 206 312 9 18 chr6 796153 796262 -181618980 + (TA)n Simple_repeat Simple_repeat 2 109 0 1913 146 3 0 chr6 796313 796601 -181618641 + AluSx SINE Alu 1 289 -23 476 306 135 5 chr6 796830 797052 -181618190 - L2 LINE L2 -886 2428 2178 1204 228 71 50 chr6 797103 797567 -181617675 - LTR42 LTR ERVL -20 475 2 211 263 165 45 chr6 802435 802568 -181612674 - MIR3 SINE MIR -56 152 4 2227 159 30 28 chr6 802601 803034 -181612208 - Tigger2a DNA MER2_type 0 434 1 316 235 29 73 chr6 803333 803469 -181611773 - L1ME4a LINE L1 0 6121 5992 411 251 102 21 chr6 803580 803815 -181611427 - L1ME4a LINE L1 -237 5884 5631 2925 3 0 0 chr6 804351 804664 -181610578 - AluYb8 SINE Alu -5 313 1 1455 172 74 16 chr6 805830 806308 -181608934 - L1MA7 LINE L1 -5 6295 5749 265 261 34 42 chr6 807459 807578 -181607664 - L1ME2 LINE L1 -227 5951 5834 449 283 135 74 chr6 807578 808576 -181606666 - L1MEd LINE L1 -2492 3637 2579 673 262 43 24 chr6 808610 808983 -181606259 - L1MEd LINE L1 -4882 1249 970 1096 121 0 0 chr6 809275 809424 -181605818 + AluSq/x SINE Alu 1 149 -164 369 176 0 0 chr6 810350 810418 -181604824 - Tigger5 DNA MER2_type 0 2323 2256 293 200 12 71 chr6 810414 810438 -181604804 + Tigger5 DNA MER2_type 2241 2265 -58 * 2245 103 3 0 chr6 810438 810738 -181604504 - AluSg1 SINE Alu -8 301 1 293 200 12 71 chr6 810738 810798 -181604444 + Tigger5 DNA MER2_type 2265 2320 -3 * 396 205 13 0 chr6 810798 810875 -181604367 - Tigger5 DNA MER2_type -2245 78 1 1373 236 110 6 chr6 811461 811952 -181603290 - L1ME2 LINE L1 0 6164 5623 610 244 146 18 chr6 812396 814139 -181601103 - L1ME2 LINE L1 -659 5507 3209 900 210 6 33 chr6 814157 814338 -181600904 - AluJo SINE Alu -24 288 113 461 223 103 29 chr6 814342 814584 -181600658 - L1ME2 LINE L1 -2945 3201 2942 436 329 48 18 chr6 814829 815057 -181600185 - HAL1b LINE L1 -756 592 358 297 68 0 0 chr6 815063 815107 -181600135 + (TC)n Simple_repeat Simple_repeat 1 44 0 297 323 60 39 chr6 815186 815418 -181599824 - HAL1 LINE L1 -1151 1356 1120 2027 143 20 64 chr6 816311 816703 -181598539 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr6 817610 817632 -181597610 + AT_rich Low_complexity Low_complexity 1 22 0 187 338 0 27 chr6 818169 818243 -181596999 + L2 LINE L2 2687 2758 -556 231 218 36 91 chr6 818308 818418 -181596824 + L2 LINE L2 2642 2745 -569 1696 194 0 10 chr6 818472 818771 -181596471 + MER2 DNA MER2_type 42 337 -8 21 0 0 0 chr6 821529 821550 -181593692 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr6 821674 821714 -181593528 + AT_rich Low_complexity Low_complexity 1 40 0 771 249 42 46 chr6 822509 822726 -181592516 - MIR SINE MIR -5 257 42 2478 78 3 0 chr6 822790 823097 -181592145 + AluSp SINE Alu 1 308 -5 343 293 44 79 chr6 823127 823356 -181591886 + L1ME2 LINE L1 5337 5557 -607 358 279 66 27 chr6 823417 823600 -181591642 + L1ME2 LINE L1 5618 5807 -314 24 53 0 0 chr6 823869 823907 -181591335 + AT_rich Low_complexity Low_complexity 1 38 0 264 314 95 7 chr6 823929 824066 -181591176 + L3 LINE CR1 327 475 -1102 418 259 53 35 chr6 824385 824555 -181590687 + L1ME LINE L1 138 310 -5895 300 253 62 41 chr6 824624 824770 -181590472 + L1ME LINE L1 1729 1877 -4519 744 315 27 10 chr6 824773 825065 -181590177 + L1ME LINE L1 3533 3829 -2386 505 94 10 83 chr6 825115 825244 -181589998 - L1PA8 LINE L1 0 6172 6082 664 183 0 0 chr6 825737 825841 -181589401 + FRAM SINE Alu 56 159 -17 1891 153 10 3 chr6 827702 828002 -181587240 + AluJb SINE Alu 1 302 -10 1276 199 101 136 chr6 831208 832239 -181583003 - L1MC5 LINE L1 -110 7851 6857 189 107 0 0 chr6 834278 834306 -181580936 + (GGGTG)n Simple_repeat Simple_repeat 5 32 0 206 192 0 39 chr6 834647 834699 -181580543 + CT-rich Low_complexity Low_complexity 2 51 0 264 267 89 30 chr6 835368 835503 -181579739 - MIR3 SINE MIR -27 181 39 624 222 90 21 chr6 836684 836873 -181578369 + L1ME2 LINE L1 5963 6164 0 21 71 0 0 chr6 838925 838967 -181576275 + AT_rich Low_complexity Low_complexity 1 42 0 371 254 123 0 chr6 841129 841259 -181573983 - MER63A DNA MER1_type -9 201 56 3541 47 0 0 chr6 841454 841859 -181573383 - L1PA5 LINE L1 -2 6152 5748 4956 40 2 0 chr6 841859 842478 -181572764 + L1P LINE L1 2831 3450 -2696 885 219 59 0 chr6 842478 842697 -181572545 + Tigger6 DNA MER2_type 1364 1595 -2 337 339 58 37 chr6 843739 843928 -181571314 + MIR SINE MIR 49 241 -21 229 338 90 7 chr6 844053 844198 -181571044 - L2 LINE L2 -1069 2245 2089 427 258 81 66 chr6 844209 844407 -181570835 + MER63A DNA MER1_type 1 201 -9 623 227 97 5 chr6 849141 849326 -181565916 - L1ME2 LINE L1 0 6164 5963 2052 133 3 0 chr6 850029 850359 -181564883 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 850433 850729 -181564513 + AluSg SINE Alu 1 296 -14 12843 125 26 19 chr6 851455 853175 -181562067 + Tigger1 DNA MER2_type 7 1743 -675 2140 136 0 13 chr6 853175 853491 -181561751 + AluJo SINE Alu 1 312 0 12843 125 26 19 chr6 853491 853799 -181561443 + Tigger1 DNA MER2_type 1743 2048 -370 187 227 227 0 chr6 857036 857102 -181558140 - MIR SINE MIR -54 208 128 2074 107 30 13 chr6 857621 857920 -181557322 - AluSp SINE Alu -9 304 1 2201 134 9 166 chr6 858138 858688 -181556554 + LTR12 LTR ERV1 1 464 -250 300 284 90 26 chr6 858848 859003 -181556239 + MIR3 SINE MIR 36 200 -8 1645 160 52 4 chr6 859544 859812 -181555430 - AluJb SINE Alu -31 281 1 1044 204 53 49 chr6 864877 865162 -181550080 + L1MB8 LINE L1 5887 6172 -6 228 327 51 32 chr6 865413 865569 -181549673 + MIR3 SINE MIR 43 201 -7 22 35 0 0 chr6 865787 865816 -181549426 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr6 868050 868099 -181547143 + AT_rich Low_complexity Low_complexity 1 49 0 866 293 107 3 chr6 868346 868711 -181546531 - L1ME2 LINE L1 -277 5885 5483 455 173 5 38 chr6 868737 868922 -181546320 + CT-rich Low_complexity Low_complexity 1 179 0 2428 97 0 0 chr6 868927 869236 -181546006 - AluSq SINE Alu -4 309 1 212 179 0 0 chr6 869299 869338 -181545904 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 201 261 0 0 chr6 869697 869785 -181545457 + A-rich Low_complexity Low_complexity 1 88 0 231 289 12 12 chr6 870475 870558 -181544684 + L1MC/D LINE L1 5578 5660 -699 2059 108 10 51 chr6 870817 871131 -181544111 + AluSg SINE Alu 1 301 -9 269 198 42 0 chr6 871549 871645 -181543597 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 562 75 47 0 chr6 871661 871767 -181543475 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 498 140 26 18 chr6 871817 871931 -181543311 + CT-rich Low_complexity Low_complexity 1 115 0 443 256 32 13 chr6 872183 872339 -181542903 - HAL1b LINE L1 -893 455 297 2288 89 0 0 chr6 873715 874007 -181541235 + AluY SINE Alu 1 292 -19 291 253 208 25 chr6 874604 874806 -181540436 - L1M4 LINE L1 -1736 4410 4172 209 359 8 31 chr6 875963 876091 -181539151 - MIR3 SINE MIR -12 196 72 2247 117 0 0 chr6 877167 877476 -181537766 + AluSc SINE Alu 1 309 0 318 306 32 38 chr6 877985 878163 -181537079 - MLT1J LTR MaLR -55 456 280 1527 209 26 10 chr6 878163 878469 -181536773 - MER44D DNA MER2_type 0 609 29 384 308 62 16 chr6 878707 878979 -181536263 - MLT1I LTR MaLR -20 389 82 2171 100 0 4 chr6 881083 881383 -181533859 - AluSc SINE Alu 0 299 1 378 311 108 0 chr6 881413 881580 -181533662 - L1ME LINE L1 -727 5439 5255 3515 107 22 141 chr6 881598 882066 -181533176 - Tigger1 DNA MER2_type 0 2418 2073 1750 121 0 89 chr6 882066 882379 -181532863 - AluSx SINE Alu -27 285 1 3515 107 22 141 chr6 882379 882670 -181532572 - Tigger1 DNA MER2_type -345 2073 1749 518 29 0 14 chr6 883454 883523 -181531719 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 379 271 133 23 chr6 884976 885278 -181529964 + LTR33 LTR ERVL 19 353 -168 369 284 76 18 chr6 885556 885831 -181529411 + L1M4 LINE L1 2709 2999 -3147 1391 274 74 35 chr6 886045 886609 -181528633 + ERVL LTR ERVL 1938 2494 -2991 1140 76 12 76 chr6 886669 886840 -181528402 - AluY SINE Alu -17 294 135 227 77 0 26 chr6 886842 886881 -181528361 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 15071 56 3 8 chr6 886883 889527 -181525715 - L1PA5 LINE L1 -26 6128 3499 896 85 119 0 chr6 889543 889661 -181525581 - AluY SINE Alu -179 132 1 842 214 50 79 chr6 890365 890645 -181524597 + L1M4 LINE L1 513 784 -5758 1018 308 60 31 chr6 891351 891471 -181523771 + LTR33 LTR ERVL 19 134 -387 2335 220 25 35 chr6 891471 892021 -181523221 + LTR55 LTR ERV 2 546 -2 1018 308 60 31 chr6 892021 892315 -181522927 + LTR33 LTR ERVL 134 445 -76 1056 322 55 34 chr6 892390 892971 -181522271 - ERVL LTR ERVL -2070 3694 3102 209 214 112 56 chr6 892971 893060 -181522182 - L2 LINE L2 -2042 1272 1179 342 224 31 68 chr6 893098 893290 -181521952 - L1M4c LINE L1 -4026 2358 2174 2118 107 0 3 chr6 896607 896897 -181518345 + AluSx SINE Alu 13 301 -11 483 261 96 6 chr6 897801 897958 -181517284 + MER5B DNA MER1_type 3 173 -5 312 27 0 0 chr6 898870 898907 -181516335 + (CA)n Simple_repeat Simple_repeat 2 38 0 2260 84 18 0 chr6 898921 899206 -181516036 + AluSc SINE Alu 1 290 -19 2397 179 63 28 chr6 899410 899946 -181515296 + MER74A LTR ERVL 3 557 -1 366 23 0 0 chr6 899984 900027 -181515215 + (TG)n Simple_repeat Simple_repeat 2 44 0 869 193 64 5 chr6 900176 900363 -181514879 - L1MD2 LINE L1 -1 6358 6161 363 44 0 0 chr6 900363 900408 -181514834 + (TG)n Simple_repeat Simple_repeat 1 45 0 1976 118 3 0 chr6 900763 901050 -181514192 + L1PA10 LINE L1 4703 4990 -1156 7098 86 9 0 chr6 901055 902084 -181513158 + L1PA10 LINE L1 5105 6159 -9 770 326 8 4 chr6 902118 902360 -181512882 + MIR SINE MIR 20 262 0 988 120 14 0 chr6 902715 902857 -181512385 + THE1C LTR MaLR 1 144 -231 450 36 0 0 chr6 902906 902962 -181512280 + (A)n Simple_repeat Simple_repeat 1 56 0 1692 229 31 52 chr6 904583 905143 -181510099 - L2 LINE L2 -3 3310 2777 2170 94 3 3 chr6 905143 905430 -181509812 - AluSg SINE Alu -23 287 1 1692 229 31 52 chr6 905430 905498 -181509744 - L2 LINE L2 -536 2777 2709 589 224 175 6 chr6 906409 906592 -181508650 + MIR SINE MIR 37 250 -12 1363 242 58 22 chr6 909140 909500 -181505742 - MLT1A2 LTR MaLR -1 373 1 266 332 111 36 chr6 911438 911718 -181503524 - L2 LINE L2 -58 3214 2914 468 272 28 61 chr6 912251 912431 -181502811 - MER5A DNA MER1_type 0 189 16 243 346 39 0 chr6 912524 912628 -181502614 - MIR SINE MIR -120 142 35 2657 134 136 86 chr6 913259 913826 -181501416 - LTR26E LTR ERV1 -27 595 1 230 368 47 74 chr6 914179 914437 -181500805 - L2 LINE L2 0 3272 3022 296 150 27 16 chr6 914637 914710 -181500532 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 914713 915597 -181499645 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 916326 916959 -181498283 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 917622 917873 -181497369 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 917922 918049 -181497193 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 918056 918168 -181497074 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 918162 918241 -181497001 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 918242 918330 -181496912 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 918389 918799 -181496443 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 918799 918925 -181496317 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 920503 921028 -181494214 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 923574 923612 -181491630 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 923841 924433 -181490809 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 924658 924848 -181490394 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 924848 924876 -181490366 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 924876 925846 -181489396 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 925846 926162 -181489080 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 926162 927676 -181487566 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 927791 928162 -181487080 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 928185 928328 -181486914 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 928429 928555 -181486687 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 930953 931066 -181484176 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 931353 931655 -181483587 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 931882 931915 -181483327 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 932249 932336 -181482906 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 932347 932515 -181482727 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 932526 932667 -181482575 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 932678 932853 -181482389 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 932856 932985 -181482257 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 933673 933723 -181481519 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 934494 934568 -181480674 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 934568 934869 -181480373 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 934869 935481 -181479761 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 936113 936143 -181479099 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 939267 939298 -181475944 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 939314 939412 -181475830 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 940075 940382 -181474860 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 941992 942020 -181473222 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 942133 942429 -181472813 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 942740 943034 -181472208 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 943126 943348 -181471894 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 944809 944889 -181470353 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 945305 945787 -181469455 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 945794 946121 -181469121 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 946123 946404 -181468838 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 946405 946881 -181468361 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 946881 947180 -181468062 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 947180 947265 -181467977 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 948118 948487 -181466755 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 948649 948833 -181466409 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 949069 949098 -181466144 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 950340 950424 -181464818 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 953853 953937 -181461305 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 953941 954044 -181461198 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 954148 954987 -181460255 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 955327 955362 -181459880 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 955380 955448 -181459794 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 956221 956251 -181458991 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 956849 956884 -181458358 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 958276 958444 -181456798 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 960586 960606 -181454636 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 960667 960871 -181454371 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 960871 960912 -181454330 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 960912 961115 -181454127 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 961220 961564 -181453678 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 961924 962284 -181452958 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 962312 962475 -181452767 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 963447 963484 -181451758 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 964161 964392 -181450850 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 964662 964972 -181450270 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 965213 965293 -181449949 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 965631 965814 -181449428 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 966346 966610 -181448632 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 967319 967532 -181447710 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 969313 969383 -181445859 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 969568 969876 -181445366 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 969947 970207 -181445035 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 971969 972026 -181443216 - FRAM/FAM SINE Alu -118 57 1 208 318 34 23 chr6 972755 972843 -181442399 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 972874 972948 -181442294 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 972951 973052 -181442190 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 973209 973397 -181441845 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 973409 973492 -181441750 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 973601 974394 -181440848 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 974394 974781 -181440461 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 974781 974822 -181440420 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 974827 975105 -181440137 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 975112 975426 -181439816 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 975426 975467 -181439775 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 975467 976089 -181439153 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 976091 976139 -181439103 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 977347 977625 -181437617 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 977903 978054 -181437188 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 978098 978374 -181436868 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 978995 979428 -181435814 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 979556 979622 -181435620 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 979622 980004 -181435238 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 980004 980172 -181435070 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 980426 980811 -181434431 - MLT1J LTR MaLR 0 511 105 341 252 52 60 chr6 981158 981625 -181433617 - L1MC5 LINE L1 -183 8058 1922 303 201 62 113 chr6 981618 981812 -181433430 + L1MC5 LINE L1 7572 7755 -206 * 326 244 26 52 chr6 981763 981878 -181433364 - L1MC5 LINE L1 -4335 2091 1980 * 356 239 35 63 chr6 981845 981987 -181433255 - L1MC5 LINE L1 -4335 2091 1954 1247 244 58 22 chr6 984014 984374 -181430868 + MLT1A2 LTR MaLR 1 373 -1 605 229 175 6 chr6 986372 986555 -181428687 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 987537 987565 -181427677 + (GA)n Simple_repeat Simple_repeat 2 29 0 182 326 0 0 chr6 987617 987666 -181427576 + L2 LINE L2 3265 3313 0 234 231 0 0 chr6 988272 988324 -181426918 + C-rich Low_complexity Low_complexity 1 52 0 245 309 99 66 chr6 988746 988898 -181426344 - L2 LINE L2 -5 3267 3111 391 316 56 56 chr6 989012 989243 -181425999 - MIR SINE MIR -28 234 4 1881 92 0 11 chr6 989556 989817 -181425425 - AluSg SINE Alu -14 296 39 1961 114 0 46 chr6 990834 991141 -181424101 - AluSg SINE Alu -17 293 1 3380 108 124 2 chr6 991185 991703 -181423539 + LTR12 LTR ERV1 1 581 -133 275 353 0 20 chr6 991991 992093 -181423149 + MIR SINE MIR 84 183 -79 2179 138 80 31 chr6 992213 992626 -181422616 + Tigger2a DNA MER2_type 2 434 0 315 278 114 102 chr6 992699 993033 -181422209 - L2 LINE L2 -1 3271 2934 2222 191 33 9 chr6 993195 993645 -181421597 - LOR1b LTR ERV1 0 461 1 4433 108 68 85 chr6 995572 996371 -181418871 + LTR1 LTR ERV1 1 785 0 16129 155 61 27 chr6 996371 999291 -181415951 + HUERS-P2 LTR ERV1 1 3088 0 4134 121 74 74 chr6 999334 1000119 -181415123 + LTR1 LTR ERV1 1 785 0 2175 228 34 15 chr6 1001293 1001829 -181413413 + L1MC3 LINE L1 7240 7785 0 667 310 31 31 chr6 1001879 1002105 -181413137 - MIR SINE MIR -1 261 36 322 290 140 11 chr6 1002259 1002445 -181412797 + L1ME3 LINE L1 416 625 -6096 505 297 76 42 chr6 1003008 1003458 -181411784 + L1ME3 LINE L1 1314 1747 -4793 2701 110 0 3 chr6 1003458 1003823 -181411419 - THE1B LTR MaLR 0 364 1 505 297 76 42 chr6 1003823 1003909 -181411333 + L1ME3 LINE L1 1747 1872 -4668 5094 45 0 0 chr6 1003909 1004513 -181410729 + L1PA5 LINE L1 5550 6153 -1 505 297 76 42 chr6 1004513 1004528 -181410714 + L1ME3 LINE L1 1872 1885 -4655 * 1819 266 96 41 chr6 1004524 1005028 -181410214 + L1ME3 LINE L1 4147 4622 -1934 2335 54 0 7 chr6 1005028 1005325 -181409917 + AluY SINE Alu 1 295 -16 1819 266 96 41 chr6 1005325 1005869 -181409373 + L1ME3 LINE L1 4622 6526 -30 354 289 86 13 chr6 1005940 1006241 -181409001 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 1006754 1006776 -181408466 + AT_rich Low_complexity Low_complexity 1 22 0 6124 43 1 0 chr6 1006966 1007690 -181407552 - L1PA7 LINE L1 -11 6143 5419 1252 182 26 45 chr6 1007690 1007959 -181407283 - AluJb SINE Alu -35 277 14 427 274 65 38 chr6 1008012 1008198 -181407044 + L1ME LINE L1 5596 5786 -754 288 257 105 66 chr6 1008394 1008546 -181406696 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 1008888 1008914 -181406328 + (A)n Simple_repeat Simple_repeat 1 26 0 237 327 106 10 chr6 1009436 1009540 -181405702 - L2 LINE L2 -8 3264 3151 382 323 158 30 chr6 1009771 1009935 -181405307 - MER91A DNA MER1_type -11 185 1 1621 216 8 14 chr6 1011374 1011730 -181403512 - L1MC1 LINE L1 -1 6332 5979 238 170 19 19 chr6 1011770 1011823 -181403419 - L1MC1 LINE L1 -360 5984 5932 193 260 188 21 chr6 1012347 1012443 -181402799 + MIR SINE MIR 38 149 -59 476 163 8 24 chr6 1012493 1012616 -181402626 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 1012694 1012875 -181402367 + CT-rich Low_complexity Low_complexity 2 178 0 384 284 28 74 chr6 1013365 1013541 -181401701 - MIR3 SINE MIR -25 183 16 1550 180 82 0 chr6 1013578 1013945 -181401297 + MER74A LTR ERVL 132 528 -30 363 277 67 8 chr6 1014528 1014647 -181400595 + MIR SINE MIR 21 146 -116 211 350 50 0 chr6 1014651 1014751 -181400491 - MIR SINE MIR 0 262 158 405 247 101 30 chr6 1016520 1016704 -181398538 + MIR SINE MIR 1 185 -63 225 213 0 49 chr6 1017065 1017126 -181398116 + MIR SINE MIR 89 146 -62 772 189 23 34 chr6 1017178 1017233 -181398009 - MIR SINE MIR -37 225 171 2539 150 61 0 chr6 1017233 1017640 -181397602 - MSTB1 LTR MaLR 0 432 1 772 189 23 34 chr6 1017640 1017759 -181397483 - MIR SINE MIR -91 171 53 268 234 35 127 chr6 1019011 1019208 -181396034 - MER112 DNA MER1_type -48 212 34 2085 110 0 7 chr6 1019208 1019489 -181395753 + AluY SINE Alu 1 279 -32 186 233 0 0 chr6 1020953 1021013 -181394229 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 1021021 1021114 -181394128 + AT_rich Low_complexity Low_complexity 1 93 0 512 219 47 72 chr6 1021121 1021399 -181393843 - L1MC5 LINE L1 -184 7777 7507 911 258 30 8 chr6 1021417 1021684 -181393558 - MER33 DNA MER1_type -30 294 22 555 308 120 23 chr6 1022179 1022572 -181392670 - L2 LINE L2 0 3313 2883 3526 296 116 16 chr6 1022622 1024368 -181390874 - L2 LINE L2 -1076 2238 319 1121 152 148 9 chr6 1024418 1024648 -181390594 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 1024951 1024979 -181390263 + AT_rich Low_complexity Low_complexity 1 28 0 261 324 47 7 chr6 1025327 1025475 -181389767 + L1ME4a LINE L1 5757 5910 -211 203 83 0 56 chr6 1026602 1026638 -181388604 - L2 LINE L2 0 3272 3239 378 262 92 39 chr6 1027782 1028011 -181387231 - L1ME4a LINE L1 -252 5869 5629 1552 255 74 4 chr6 1030483 1030954 -181384288 + MLT1D LTR MaLR 2 505 0 2255 101 0 0 chr6 1031602 1031890 -181383352 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 1032127 1032197 -181383045 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 1032388 1032543 -181382699 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 1033405 1033597 -181381645 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 1034694 1035000 -181380242 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 1039015 1039041 -181376201 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 1039938 1040126 -181375116 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 1041506 1041568 -181373674 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 1041726 1041991 -181373251 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 1042655 1042854 -181372388 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 1043291 1043845 -181371397 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 1043884 1043988 -181371254 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 1043989 1044222 -181371020 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 1044589 1044888 -181370354 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 1045359 1045949 -181369293 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 1046668 1047037 -181368205 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 1047551 1047712 -181367530 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 1047807 1047867 -181367375 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 1048049 1048329 -181366913 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 1048647 1048683 -181366559 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 1048850 1049211 -181366031 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 1049211 1049250 -181365992 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 1049258 1049350 -181365892 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 1049355 1049452 -181365790 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 1049491 1051197 -181364045 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 1051225 1052113 -181363129 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 1052113 1052421 -181362821 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 1052421 1054333 -181360909 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 1054330 1054748 -181360494 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 1057372 1057667 -181357575 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 1057723 1057911 -181357331 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 1057968 1058160 -181357082 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 1058160 1058415 -181356827 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 1058415 1058475 -181356767 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 1058515 1058822 -181356420 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 1060189 1063083 -181352159 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 1063526 1063852 -181351390 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 1063855 1063969 -181351273 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 1064110 1064195 -181351047 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 1064225 1064558 -181350684 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 1064558 1064988 -181350254 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 1064988 1065684 -181349558 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 1065684 1065830 -181349412 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 1065830 1066154 -181349088 + THE1C LTR MaLR 56 375 0 4575 212 17 18 chr6 1066154 1067368 -181347874 + L1MC/D LINE L1 4363 5589 -793 261 230 50 50 chr6 1067584 1067684 -181347558 + L1MC/D LINE L1 6024 6123 -1921 630 294 61 62 chr6 1067937 1068953 -181346289 + L1ME3A LINE L1 4931 5927 -243 462 155 54 0 chr6 1069046 1069214 -181346028 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1069235 1069292 -181345950 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1069322 1069494 -181345748 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 1023 257 75 18 chr6 1069965 1070354 -181344888 - LTR16A LTR ERVL 0 450 40 1823 182 28 23 chr6 1070944 1071379 -181343863 + L1MB7 LINE L1 5748 6184 0 203 218 36 0 chr6 1071880 1071935 -181343307 + L2 LINE L2 3216 3272 0 485 239 158 16 chr6 1072222 1072406 -181342836 - MIR SINE MIR -6 256 47 1540 194 56 48 chr6 1073042 1073419 -181341823 - MLT1B LTR MaLR -8 382 3 3204 176 125 3 chr6 1073651 1074315 -181340927 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1075660 1075697 -181339545 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 421 234 71 26 chr6 1078051 1078238 -181337004 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1078253 1078433 -181336809 + CT-rich Low_complexity Low_complexity 1 180 0 1622 121 0 0 chr6 1079815 1080039 -181335203 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1080222 1080273 -181334969 + (CA)n Simple_repeat Simple_repeat 1 51 0 1293 245 233 70 chr6 1080848 1081788 -181333454 + L1MC4 LINE L1 6716 7808 0 1423 121 9 23 chr6 1081983 1082198 -181333044 + AluJo SINE Alu 58 269 -43 398 305 34 51 chr6 1083914 1084091 -181331151 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1084256 1084278 -181330964 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1084278 1085039 -181330203 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1085669 1085750 -181329492 + CT-rich Low_complexity Low_complexity 4 85 0 1737 209 57 27 chr6 1087049 1087489 -181327753 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1087504 1087534 -181327708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1117 226 66 8 chr6 1089594 1089851 -181325391 + MLT1A1 LTR MaLR 70 341 -24 1394 119 0 0 chr6 1089851 1090053 -181325189 - L1PA8 LINE L1 -867 5279 5078 6786 72 7 9 chr6 1090053 1090946 -181324296 + L1PA8 LINE L1 5276 6172 0 262 224 0 0 chr6 1090981 1091030 -181324212 + MLT1A1 LTR MaLR 324 372 -2 21 0 0 0 chr6 1091459 1091480 -181323762 + AT_rich Low_complexity Low_complexity 1 21 0 233 275 76 64 chr6 1092215 1092386 -181322856 - MER5B DNA MER1_type -2 176 4 441 270 42 46 chr6 1092396 1092633 -181322609 + MIR SINE MIR 19 261 -1 298 329 90 26 chr6 1094089 1094244 -181320998 - L2 LINE L2 0 3272 3108 365 288 79 10 chr6 1094367 1094552 -181320690 + MIR SINE MIR 12 200 -62 247 269 15 0 chr6 1095066 1095133 -181320109 - MIR3 SINE MIR -54 154 87 422 299 201 11 chr6 1095136 1095504 -181319738 - LTR16B LTR ERVL -24 440 3 738 324 108 21 chr6 1095937 1096562 -181318680 - ERVL LTR ERVL -2327 3437 2727 546 92 11 59 chr6 1096610 1096710 -181318532 - LTR12 LTR ERV1 0 714 481 294 198 66 22 chr6 1096712 1096803 -181318439 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1096804 1097048 -181318194 - LTR12 LTR ERV1 -435 279 53 238 250 0 0 chr6 1097048 1097100 -181318142 - LTR30 LTR ERV1 -670 52 1 1535 306 88 36 chr6 1097164 1098020 -181317222 - ERVL LTR ERVL -2406 2590 1691 523 365 48 22 chr6 1098690 1099188 -181316054 - ERVL LTR ERVL -4483 513 3 366 318 16 0 chr6 1100794 1100923 -181314319 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1102834 1103009 -181312233 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 399 296 30 23 chr6 1103078 1103210 -181312032 + L2 LINE L2 3139 3271 -1 1415 186 164 0 chr6 1104458 1104770 -181310472 + MSTB LTR MaLR 16 378 -48 304 326 44 62 chr6 1105162 1105389 -181309853 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1105405 1105425 -181309817 + AT_rich Low_complexity Low_complexity 1 20 -21 2916 19 0 0 chr6 1105425 1105743 -181309499 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1105743 1105764 -181309478 + AT_rich Low_complexity Low_complexity 20 41 0 461 287 72 32 chr6 1105764 1106015 -181309227 + HAL1b LINE L1 232 492 -856 241 230 70 30 chr6 1106024 1106124 -181309118 + HAL1b LINE L1 634 737 -611 5341 202 49 16 chr6 1106336 1107607 -181307635 - L1M3 LINE L1 -622 5558 4219 2405 85 0 0 chr6 1107607 1107900 -181307342 - AluY SINE Alu -12 299 7 5341 202 49 16 chr6 1107900 1108096 -181307146 - L1M3 LINE L1 -1961 4219 4031 215 152 22 0 chr6 1108684 1108730 -181306512 + (TG)n Simple_repeat Simple_repeat 2 48 0 1934 264 34 21 chr6 1108747 1109358 -181305884 + L1MC4a LINE L1 5284 5902 -1906 2167 121 0 13 chr6 1109492 1109799 -181305443 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 1109819 1109848 -181305394 + AT_rich Low_complexity Low_complexity 1 29 0 420 217 65 65 chr6 1110381 1110519 -181304723 - MER112 DNA MER1_type -7 253 116 215 314 59 85 chr6 1110562 1110680 -181304562 - L2 LINE L2 -36 3236 3122 2178 105 21 0 chr6 1112298 1112584 -181302658 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1112706 1112732 -181302510 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr6 1113935 1113962 -181301280 + (TG)n Simple_repeat Simple_repeat 2 28 0 432 188 89 0 chr6 1115515 1115616 -181299626 - L1MB2 LINE L1 0 6171 6062 2825 147 31 4 chr6 1116303 1116785 -181298457 - L1MB3 LINE L1 -10 6173 5679 1656 232 57 5 chr6 1116947 1117274 -181297968 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1117274 1117304 -181297938 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1656 232 57 5 chr6 1117304 1117504 -181297738 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1121098 1121297 -181293945 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1121739 1122047 -181293195 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1122061 1122170 -181293072 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1122170 1122453 -181292789 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1122453 1122703 -181292539 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1123870 1124087 -181291155 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1124526 1124643 -181290599 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1124645 1124784 -181290458 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1124796 1124959 -181290283 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1125439 1126130 -181289112 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1126189 1126417 -181288825 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1126488 1126892 -181288350 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1127061 1127447 -181287795 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1128062 1128369 -181286873 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1128439 1128548 -181286694 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1128920 1129092 -181286150 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1129122 1129295 -181285947 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1129787 1129959 -181285283 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1131497 1131795 -181283447 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1132185 1132285 -181282957 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1132291 1132409 -181282833 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1132529 1132709 -181282533 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1133800 1134108 -181281134 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1134108 1134403 -181280839 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1134403 1134763 -181280479 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1135235 1135501 -181279741 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1135501 1135597 -181279645 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1135597 1135693 -181279549 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1135704 1135725 -181279517 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1135731 1135909 -181279333 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1135948 1137112 -181278130 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1137359 1137716 -181277526 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1138055 1138167 -181277075 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1139891 1140154 -181275088 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1140569 1140874 -181274368 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1140940 1141179 -181274063 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1142317 1142380 -181272862 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1142861 1143077 -181272165 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1143083 1143176 -181272066 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1143997 1144168 -181271074 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1144224 1144474 -181270768 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1145570 1145655 -181269587 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1146273 1146563 -181268679 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1146706 1146742 -181268500 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1147541 1147686 -181267556 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1147694 1147779 -181267463 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1147843 1148017 -181267225 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1148041 1148113 -181267129 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1148250 1148567 -181266675 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1148702 1148870 -181266372 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1149018 1149335 -181265907 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1149648 1149760 -181265482 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1150377 1150398 -181264844 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1151275 1151577 -181263665 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1151996 1152202 -181263040 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1154313 1154608 -181260634 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1155205 1155388 -181259854 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1156523 1156711 -181258531 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1157549 1157617 -181257625 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1157858 1157978 -181257264 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1157998 1158224 -181257018 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1158861 1159169 -181256073 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1159357 1159423 -181255819 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1159423 1159727 -181255515 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1159727 1159826 -181255416 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1160345 1160457 -181254785 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1160982 1161030 -181254212 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1161343 1161477 -181253765 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1162015 1162092 -181253150 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1162094 1162192 -181253050 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1162939 1163016 -181252226 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1163016 1163316 -181251926 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1163316 1163348 -181251894 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1163364 1163535 -181251707 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1164419 1164655 -181250587 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1164663 1165508 -181249734 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1165711 1166014 -181249228 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1166477 1166768 -181248474 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1167373 1167545 -181247697 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1167547 1167613 -181247629 - Tigger1 DNA MER2_type -2355 63 1 2165 96 27 7 chr6 1167960 1168252 -181246990 - AluSg SINE Alu -11 299 2 290 288 12 0 chr6 1168836 1168916 -181246326 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1169110 1169138 -181246104 + AT_rich Low_complexity Low_complexity 1 28 0 2151 114 20 0 chr6 1169212 1169510 -181245732 + AluSx SINE Alu 1 304 -8 232 250 50 19 chr6 1169983 1170143 -181245099 + (CA)n Simple_repeat Simple_repeat 1 165 0 2368 88 0 16 chr6 1170335 1170641 -181244601 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1171144 1171222 -181244020 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1040 253 101 58 chr6 1171356 1172011 -181243231 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1172085 1172201 -181243041 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1173264 1173288 -181241954 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1173615 1173644 -181241598 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1174810 1174842 -181240400 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 380 304 32 0 chr6 1176751 1176876 -181238366 - L2 LINE L2 0 3313 3185 332 335 54 16 chr6 1177059 1177244 -181237998 - MIR3 SINE MIR -7 201 10 233 325 67 41 chr6 1178533 1178727 -181236515 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1180006 1180054 -181235188 + GA-rich Low_complexity Low_complexity 4 54 0 181 242 55 66 chr6 1181553 1181644 -181233598 - L2 LINE L2 -9 3263 3174 1724 193 42 28 chr6 1182009 1182367 -181232875 - MLT1A1 LTR MaLR -2 363 1 303 224 42 159 chr6 1183838 1184102 -181231140 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1184631 1184951 -181230291 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1185522 1185814 -181229428 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1186759 1186791 -181228451 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1186791 1187100 -181228142 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1187100 1187420 -181227822 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1187420 1187715 -181227527 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1187745 1188120 -181227122 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1188154 1188630 -181226612 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1188630 1188674 -181226568 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1188674 1189109 -181226133 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1189917 1189956 -181225286 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1191943 1192332 -181222910 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1193995 1194357 -181220885 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1194473 1194646 -181220596 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1195481 1195653 -181219589 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1195862 1195991 -181219251 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1195991 1196122 -181219120 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1196135 1196167 -181219075 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1196167 1196339 -181218903 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1198264 1198585 -181216657 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1199350 1199463 -181215779 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1201634 1201924 -181213318 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1201946 1202121 -181213121 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1202701 1202829 -181212413 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1203220 1203307 -181211935 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1204921 1205244 -181209998 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1206714 1206904 -181208338 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1207880 1208039 -181207203 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1208073 1208653 -181206589 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1208927 1209277 -181205965 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1209277 1209576 -181205666 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1209576 1210756 -181204486 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1212558 1212877 -181202365 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1213331 1213627 -181201615 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1213933 1213995 -181201247 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1214178 1216103 -181199139 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1216103 1216155 -181199087 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1216155 1216452 -181198790 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1216452 1216490 -181198752 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1216490 1216771 -181198471 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1217936 1218030 -181197212 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1218030 1218764 -181196478 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1218764 1218888 -181196354 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1218888 1219301 -181195941 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1219301 1219611 -181195631 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1219611 1219663 -181195579 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1221608 1221788 -181193454 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1221788 1222071 -181193171 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1223459 1223849 -181191393 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1224376 1224499 -181190743 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1224770 1224949 -181190293 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1225888 1225927 -181189315 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1226184 1226730 -181188512 - L1PB4 LINE L1 -4 6152 5600 183 184 0 0 chr6 1228767 1228805 -181186437 + CT-rich Low_complexity Low_complexity 3 40 0 657 225 62 25 chr6 1229875 1230035 -181185207 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1230273 1230792 -181184450 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1230792 1231169 -181184073 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1231169 1232755 -181182487 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1232755 1232768 -181182474 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1232768 1233141 -181182101 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1233141 1233457 -181181785 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1233640 1233723 -181181519 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1233775 1234465 -181180777 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1234471 1234885 -181180357 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1234886 1235127 -181180115 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1235132 1235502 -181179740 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1235522 1235559 -181179683 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1235797 1235833 -181179409 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1235834 1236042 -181179200 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1236258 1236403 -181178839 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1237012 1237037 -181178205 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1237052 1237099 -181178143 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1237099 1237376 -181177866 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1237376 1237489 -181177753 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1238915 1239132 -181176110 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1239141 1239279 -181175963 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1239279 1239471 -181175771 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1239552 1239693 -181175549 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1241235 1241352 -181173890 - MLT1L LTR MaLR -106 436 303 * 470 222 220 24 chr6 1241328 1241583 -181173659 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1243051 1243103 -181172139 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1243172 1243396 -181171846 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1243414 1243466 -181171776 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1243575 1244038 -181171204 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1244081 1244233 -181171009 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1244496 1244673 -181170569 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1244745 1244920 -181170322 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1245543 1245626 -181169616 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1245647 1245710 -181169532 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1246571 1246877 -181168365 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1247315 1247598 -181167644 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1248076 1249079 -181166163 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1249080 1249369 -181165873 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1249808 1250123 -181165119 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1252155 1252216 -181163026 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1254434 1254720 -181160522 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1255707 1255737 -181159505 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1255971 1256133 -181159109 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1256302 1256776 -181158466 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1256777 1257000 -181158242 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1257069 1257271 -181157971 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1257280 1257407 -181157835 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1258161 1258394 -181156848 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1259330 1259370 -181155872 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1259898 1259977 -181155265 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1260432 1260716 -181154526 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1260729 1260798 -181154444 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1261197 1261771 -181153471 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1261771 1261872 -181153370 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1261872 1262259 -181152983 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1262357 1262479 -181152763 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1264748 1265106 -181150136 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1265233 1265388 -181149854 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1266164 1266233 -181149009 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1267235 1267268 -181147974 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1267396 1267563 -181147679 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1267571 1267658 -181147584 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1267791 1268361 -181146881 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1269176 1269371 -181145871 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1269448 1269820 -181145422 + MLT1J LTR MaLR 107 480 -31 2492 217 104 3 chr6 1270083 1270793 -181144449 + L1M4 LINE L1 2433 3214 -2932 412 287 132 49 chr6 1270846 1271111 -181144131 + L2 LINE L2 3023 3309 -4 383 398 39 21 chr6 1271315 1271647 -181143595 - L2 LINE L2 -341 2973 2636 604 232 151 16 chr6 1272420 1272605 -181142637 + MIR SINE MIR 47 256 -6 974 225 35 22 chr6 1273619 1273850 -181141392 + MIR SINE MIR 12 245 -17 199 341 45 38 chr6 1276430 1276562 -181138680 - MIR SINE MIR -128 134 2 234 316 57 62 chr6 1278105 1278282 -181136960 + MER5B DNA MER1_type 3 178 0 2435 199 17 2 chr6 1279481 1279958 -181135284 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1280379 1280563 -181134679 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1280780 1280953 -181134289 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1280967 1281112 -181134130 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1281130 1281185 -181134057 + GA-rich Low_complexity Low_complexity 1 57 0 682 150 87 40 chr6 1281530 1281703 -181133539 - MER53 DNA DNA 0 189 9 2073 92 0 20 chr6 1282586 1282881 -181132361 + AluSc SINE Alu 1 289 -20 392 276 130 73 chr6 1283214 1283262 -181131980 + MIR SINE MIR 49 93 -169 1802 141 47 81 chr6 1283262 1283646 -181131596 + THE1C LTR MaLR 5 375 0 392 276 130 73 chr6 1283646 1283789 -181131453 + MIR SINE MIR 93 251 -11 284 346 101 37 chr6 1283982 1284170 -181131072 + MIR3 SINE MIR 6 205 -3 593 219 55 34 chr6 1284533 1284679 -181130563 - MER63 DNA MER1_type -57 779 5 456 266 104 67 chr6 1285419 1285822 -181129420 + L1MC/D LINE L1 2810 3227 -2919 429 338 102 37 chr6 1286100 1287522 -181127720 + L1MC/D LINE L1 3322 4836 -1310 271 308 63 46 chr6 1287569 1287917 -181127325 + L1MC/D LINE L1 4778 5131 -1015 400 287 91 41 chr6 1288049 1288672 -181126570 + L1MC/D LINE L1 5175 5824 -747 * 576 202 18 40 chr6 1288649 1288816 -181126426 + L1ME2 LINE L1 5667 5835 -329 632 302 0 37 chr6 1288853 1289095 -181126147 + L1ME2 LINE L1 5919 6151 -13 341 241 63 94 chr6 1289138 1289329 -181125913 + L1MC4 LINE L1 7839 8023 -19 293 0 27 0 chr6 1289818 1289855 -181125387 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 183 127 14 chr6 1290117 1290188 -181125054 + MER69 DNA AcHobo 2448 2526 0 1489 174 11 3 chr6 1290568 1290850 -181124392 + AluJb SINE Alu 1 284 -28 545 255 208 0 chr6 1291971 1292183 -181123059 + MIR SINE MIR 4 259 -3 23 54 0 0 chr6 1292209 1292246 -181122996 + AT_rich Low_complexity Low_complexity 1 37 0 984 156 146 35 chr6 1293835 1294034 -181121208 - Tigger2a DNA MER2_type -26 418 198 323 209 198 0 chr6 1294023 1294114 -181121128 - Tigger2a DNA MER2_type -325 109 1 * 428 271 64 53 chr6 1294556 1294744 -181120498 - MIR SINE MIR -26 236 47 833 228 25 10 chr6 1295048 1295250 -181119992 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1295289 1295340 -181119902 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 281 293 84 95 chr6 1295573 1296014 -181119228 - L2 LINE L2 -832 2482 2047 323 216 0 81 chr6 1297284 1297395 -181117847 - MIR3 SINE MIR -18 190 89 1041 142 6 11 chr6 1297440 1297616 -181117626 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1299849 1299869 -181115373 + (TTC)n Simple_repeat Simple_repeat 2 21 0 831 158 0 8 chr6 1299874 1300001 -181115241 - FLAM_C SINE Alu -16 127 2 207 306 97 16 chr6 1300004 1300128 -181115114 - MIR3 SINE MIR -7 201 68 343 266 46 18 chr6 1300514 1300623 -181114619 - L2 LINE L2 -18 3295 3184 944 333 92 51 chr6 1300628 1301150 -181114092 - L2 LINE L2 -998 2316 1738 1535 65 0 0 chr6 1301150 1301349 -181113893 - L1PA4 LINE L1 0 6155 5957 944 333 92 51 chr6 1301349 1301750 -181113492 - L2 LINE L2 -1576 1738 1355 436 293 111 68 chr6 1302145 1302497 -181112745 - L2 LINE L2 -2604 710 344 1025 163 74 15 chr6 1302556 1302759 -181112483 - MER20 DNA MER1_type 0 219 5 206 292 210 52 chr6 1304590 1304712 -181110530 - L2 LINE L2 0 3313 3212 806 212 31 45 chr6 1304712 1304934 -181110308 - MER20 DNA MER1_type 0 219 1 206 292 210 52 chr6 1304934 1305078 -181110164 - L2 LINE L2 -101 3212 3005 218 371 60 0 chr6 1305615 1305731 -181109511 + L2 LINE L2 3148 3270 -2 860 287 5 0 chr6 1305741 1305964 -181109278 - MER58A DNA MER1_type 0 224 1 241 324 74 9 chr6 1306122 1306230 -181109012 - MIR3 SINE MIR -5 203 89 858 202 17 77 chr6 1307826 1308059 -181107183 + MER20 DNA MER1_type 1 219 0 1980 104 4 7 chr6 1308651 1308930 -181106312 + AluSx SINE Alu 24 301 -11 263 26 51 0 chr6 1311789 1311828 -181103414 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1312062 1312090 -181103152 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 579 207 22 0 chr6 1312181 1312408 -181102834 - L1MA9 LINE L1 -21 6291 5964 2328 77 3 0 chr6 1312417 1312717 -181102525 - AluSp SINE Alu -12 301 1 552 239 60 24 chr6 1315107 1315274 -181099968 - MIR SINE MIR -73 189 17 233 178 0 0 chr6 1315977 1316022 -181099220 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1316984 1317005 -181098237 + AT_rich Low_complexity Low_complexity 1 21 0 254 329 35 12 chr6 1317024 1317109 -181098133 + L2 LINE L2 3019 3105 -167 638 264 96 65 chr6 1317575 1318059 -181097183 + LTR67 LTR ERVL 4 552 -5 407 268 78 33 chr6 1320367 1320520 -181094722 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1320865 1321038 -181094204 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1321146 1321283 -181093959 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1321283 1321587 -181093655 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1321587 1321861 -181093381 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1321868 1321909 -181093333 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1323047 1324076 -181091166 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1324076 1325671 -181089571 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1327388 1327428 -181087814 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1327597 1327863 -181087379 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1328282 1328594 -181086648 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1329450 1329828 -181085414 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1331243 1331272 -181083970 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1332043 1332098 -181083144 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1332371 1332414 -181082828 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1332414 1332723 -181082519 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1332948 1333244 -181081998 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1333244 1333317 -181081925 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1333326 1335519 -181079723 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1335775 1335960 -181079282 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1335965 1336143 -181079099 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1336358 1336613 -181078629 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1336878 1337008 -181078234 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1337011 1337653 -181077589 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1337688 1337902 -181077340 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1338131 1338289 -181076953 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1338516 1338566 -181076676 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1339719 1339854 -181075388 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1339986 1340275 -181074967 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1341506 1341929 -181073313 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1341942 1342223 -181073019 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1343261 1343320 -181071922 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1343320 1343636 -181071606 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1343636 1343846 -181071396 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1345340 1345777 -181069465 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1347194 1347500 -181067742 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1347500 1348081 -181067161 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1348277 1348837 -181066405 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1349911 1350669 -181064573 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1350813 1350954 -181064288 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1351255 1351410 -181063832 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1351515 1351564 -181063678 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1351564 1351693 -181063549 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1351693 1351848 -181063394 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1352154 1352255 -181062987 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1352503 1352799 -181062443 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1352871 1353023 -181062219 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1353573 1353725 -181061517 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1353919 1354051 -181061191 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1355264 1355593 -181059649 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1355648 1355677 -181059565 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1355745 1356251 -181058991 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1357722 1357779 -181057463 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1358146 1358554 -181056688 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1360106 1360167 -181055075 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1361391 1361506 -181053736 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1361661 1361774 -181053468 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1361914 1362267 -181052975 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1363055 1363515 -181051727 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1363579 1363786 -181051456 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1364527 1364697 -181050545 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1365375 1365539 -181049703 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1366359 1366511 -181048731 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1366569 1366623 -181048619 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1366649 1366731 -181048511 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1366735 1366793 -181048449 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1366800 1366945 -181048297 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1368362 1368394 -181046848 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1368699 1368775 -181046467 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1368776 1369882 -181045360 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1369909 1369957 -181045285 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1370644 1370768 -181044474 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1372295 1372682 -181042560 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1372708 1373603 -181041639 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1373603 1373913 -181041329 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1373915 1374322 -181040920 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1374327 1374409 -181040833 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1374414 1374623 -181040619 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1374653 1374966 -181040276 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1375162 1375313 -181039929 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1375912 1375935 -181039307 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1377057 1377081 -181038161 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1377766 1377831 -181037411 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1377901 1379185 -181036057 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1379185 1379481 -181035761 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1379481 1380356 -181034886 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1380356 1380691 -181034551 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1380691 1380887 -181034355 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1380887 1380914 -181034328 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1381378 1381539 -181033703 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1381539 1381928 -181033314 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1381928 1382067 -181033175 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1382070 1382199 -181033043 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1382271 1382628 -181032614 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1382844 1382871 -181032371 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1383066 1383125 -181032117 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1383580 1383626 -181031616 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1385947 1386014 -181029228 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1389019 1389042 -181026200 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1389464 1389561 -181025681 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1389788 1389823 -181025419 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1389900 1389922 -181025320 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1390576 1390600 -181024642 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1390749 1390776 -181024466 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1394107 1394166 -181021076 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1394542 1394676 -181020566 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1394676 1394878 -181020364 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1394882 1394942 -181020300 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1394944 1395146 -181020096 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395150 1395210 -181020032 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1395212 1395347 -181019895 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1395347 1395549 -181019693 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395553 1395613 -181019629 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1395615 1395817 -181019425 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1395821 1395881 -181019361 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1395883 1396015 -181019227 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1396017 1396219 -181019023 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1396223 1396283 -181018959 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1396285 1396417 -181018825 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1396419 1396728 -181018514 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1398492 1398781 -181016461 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1399644 1399887 -181015355 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1401848 1401920 -181013322 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1401889 1401944 -181013298 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1402786 1402922 -181012320 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1402994 1403043 -181012199 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1403187 1403511 -181011731 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1403628 1403785 -181011457 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1403958 1404209 -181011033 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1404495 1405493 -181009749 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1405529 1405855 -181009387 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1405856 1406414 -181008828 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1406405 1407097 -181008145 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1407136 1407174 -181008068 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1407650 1407953 -181007289 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1408327 1408623 -181006619 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1409102 1409657 -181005585 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1409952 1410064 -181005178 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1411659 1411720 -181003522 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1412305 1412533 -181002709 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1412585 1412857 -181002385 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1412857 1413165 -181002077 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1413165 1413217 -181002025 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1413231 1413576 -181001666 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1413623 1413770 -181001472 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1413770 1414074 -181001168 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1414074 1414133 -181001109 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1414205 1414291 -181000951 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1414355 1414477 -181000765 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1414578 1414690 -181000552 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1414753 1414793 -181000449 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1414893 1415307 -180999935 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1416849 1417107 -180998135 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1417101 1418141 -180997101 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1418141 1418411 -180996831 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1418411 1419526 -180995716 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1419513 1420308 -180994934 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1420368 1420761 -180994481 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1420761 1421079 -180994163 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1421079 1421126 -180994116 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1421698 1421749 -180993493 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1421784 1421851 -180993391 - MIR SINE MIR -104 158 87 2188 108 0 3 chr6 1422821 1423108 -180992134 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1423357 1423389 -180991853 + (CA)n Simple_repeat Simple_repeat 1 32 0 5879 245 28 29 chr6 1425061 1427331 -180987911 + L1MB7 LINE L1 16 2424 -4401 2615 97 8 0 chr6 1427331 1427683 -180987559 - THE1A LTR MaLR 0 355 1 4211 87 3 7 chr6 1427683 1428255 -180986987 - THE1A-int LTR MaLR 0 1580 1011 876 240 22 11 chr6 1428255 1428530 -180986712 + L1MB7 LINE L1 3542 3819 -2825 7567 219 14 5 chr6 1428566 1430745 -180984497 + L1 LINE L1 1610 3826 -2320 1220 162 8 7 chr6 1430735 1431036 -180984206 + L1MB7 LINE L1 4163 4432 -2212 * 257 174 0 0 chr6 1431043 1431089 -180984153 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1431209 1431296 -180983946 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1431320 1431493 -180983749 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 3801 168 55 42 chr6 1431493 1432082 -180983160 + L1MB7 LINE L1 5699 6279 -403 2344 85 0 26 chr6 1432082 1432388 -180982854 + AluSx SINE Alu 1 298 -14 2057 120 53 0 chr6 1432398 1432682 -180982560 + AluSx SINE Alu 1 299 -13 3801 168 55 42 chr6 1432682 1432919 -180982323 + L1MB7 LINE L1 6287 6547 -135 2440 99 0 0 chr6 1432919 1433231 -180982011 + AluSp SINE Alu 1 312 -1 3801 168 55 42 chr6 1433231 1433282 -180981960 + L1MB7 LINE L1 6547 6596 -86 1337 168 50 23 chr6 1433282 1433544 -180981698 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1433547 1434361 -180980881 + (TA)n Simple_repeat Simple_repeat 1 857 0 309 146 0 0 chr6 1434385 1434440 -180980802 + L1MB8 LINE L1 6112 6166 -12 394 313 84 39 chr6 1434443 1434881 -180980361 - L1MC/D LINE L1 -2096 5712 5255 207 273 273 14 chr6 1435004 1435147 -180980095 + L2 LINE L2 1313 1492 -1822 5142 194 71 44 chr6 1435410 1435477 -180979765 - Charlie1 DNA MER1_type 0 2761 2697 1982 113 76 0 chr6 1435477 1435752 -180979490 + AluSx SINE Alu 3 298 -14 5142 194 71 44 chr6 1435752 1436456 -180978786 - Charlie1 DNA MER1_type -64 2697 2014 1240 218 58 14 chr6 1436456 1436749 -180978493 - AluJo SINE Alu -6 306 1 5142 194 71 44 chr6 1436749 1437418 -180977824 - Charlie1 DNA MER1_type -747 2014 1280 3783 60 2 2 chr6 1437418 1437888 -180977354 + L1PA5 LINE L1 5685 6154 0 836 165 38 0 chr6 1437901 1438034 -180977208 + AluSq/x SINE Alu 1 138 -174 4364 226 53 30 chr6 1438047 1439263 -180975979 - Charlie1 DNA MER1_type -1513 1248 6 2152 168 13 3 chr6 1440182 1440568 -180974674 - MLT1B LTR MaLR 0 390 1 305 308 0 19 chr6 1440619 1440723 -180974519 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1441512 1441534 -180973708 + AT_rich Low_complexity Low_complexity 1 22 0 1614 192 7 16 chr6 1442513 1442820 -180972422 + AluJo SINE Alu 7 310 -2 1766 176 20 3 chr6 1443396 1443702 -180971540 - AluJb SINE Alu -1 311 1 282 242 0 0 chr6 1445235 1445297 -180969945 + L2 LINE L2 3250 3311 -2 2298 116 51 25 chr6 1445345 1445700 -180969542 - THE1B LTR MaLR 0 364 1 765 247 0 6 chr6 1445731 1445889 -180969353 + FRAM SINE Alu 1 156 -20 247 288 76 47 chr6 1446054 1446290 -180968952 + L1ME LINE L1 3931 4173 -1973 518 228 39 0 chr6 1446344 1446471 -180968771 + MER103 DNA DNA 35 166 0 342 361 46 16 chr6 1446612 1446806 -180968436 + MIR SINE MIR 14 213 -49 424 278 231 4 chr6 1446821 1447094 -180968148 + L1ME LINE L1 5412 5746 -375 376 236 57 57 chr6 1447381 1447521 -180967721 - L1M4 LINE L1 -2892 3254 3115 559 322 17 6 chr6 1447556 1447736 -180967506 + LTR67 LTR ERVL 45 226 -331 311 301 28 57 chr6 1447844 1448020 -180967222 + LTR67 LTR ERVL 387 557 0 384 296 67 62 chr6 1448023 1448459 -180966783 - L1M4 LINE L1 -3034 3112 2675 387 331 18 6 chr6 1448469 1448632 -180966610 + MER5A DNA MER1_type 1 165 -24 265 352 88 33 chr6 1448674 1448856 -180966386 - L3b LINE CR1 -61 1522 1331 578 291 34 6 chr6 1449282 1449461 -180965781 + MLT1L LTR MaLR 431 614 -1 232 346 79 0 chr6 1449551 1449678 -180965564 - L3b LINE CR1 -343 1240 1104 836 256 106 47 chr6 1450086 1450493 -180964749 + L2 LINE L2 2883 3313 0 26 104 0 0 chr6 1451260 1451356 -180963886 + AT_rich Low_complexity Low_complexity 1 96 0 404 191 114 15 chr6 1451449 1451580 -180963662 + ORSL DNA AcHobo 1 144 -131 2213 71 7 0 chr6 1452822 1453139 -180962103 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1453931 1453962 -180961280 + GC_rich Low_complexity Low_complexity 1 31 0 740 268 38 0 chr6 1454734 1454917 -180960325 - MIR SINE MIR -8 254 65 292 286 62 34 chr6 1456702 1456880 -180958362 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1457558 1457588 -180957654 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1457657 1457742 -180957500 + G-rich Low_complexity Low_complexity 3 87 0 381 280 77 28 chr6 1461889 1462032 -180953210 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1462955 1462990 -180952252 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1464318 1464370 -180950872 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1465567 1465588 -180949654 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1465641 1465691 -180949551 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1467259 1467302 -180947940 + (CA)n Simple_repeat Simple_repeat 1 43 0 1521 134 5 0 chr6 1472163 1472387 -180942855 - AluJo SINE Alu 0 312 88 860 197 26 57 chr6 1473194 1473387 -180941855 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1473904 1474054 -180941188 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1474087 1474204 -180941038 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1474235 1474319 -180940923 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1474795 1474818 -180940424 + AT_rich Low_complexity Low_complexity 1 23 0 1921 213 12 5 chr6 1475739 1476167 -180939075 + L1MA7 LINE L1 5371 5801 -490 409 200 27 0 chr6 1476170 1476245 -180938997 - Charlie3 DNA MER1_type 0 2712 2636 2057 177 58 33 chr6 1476256 1476741 -180938501 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1477492 1477807 -180937435 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1477854 1478035 -180937207 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1478077 1478437 -180936805 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1478444 1478584 -180936658 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1478588 1478767 -180936475 + (CA)n Simple_repeat Simple_repeat 1 179 0 1719 169 67 9 chr6 1479614 1479957 -180935285 - MLT1B LTR MaLR -8 382 20 2288 108 0 0 chr6 1480826 1481121 -180934121 + AluSx SINE Alu 1 295 -17 2256 74 7 17 chr6 1483346 1483645 -180931597 + AluY SINE Alu 1 296 -15 196 267 15 126 chr6 1485378 1485471 -180929771 - MIR SINE MIR -51 211 135 2350 64 4 0 chr6 1485471 1485791 -180929451 + AluY SINE Alu 1 321 0 196 267 15 126 chr6 1485791 1485831 -180929411 - MIR SINE MIR -127 135 92 859 171 56 42 chr6 1486026 1486242 -180929000 + MER20 DNA MER1_type 1 219 0 1851 148 0 48 chr6 1486301 1486612 -180928630 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1486612 1486633 -180928609 + AT_rich Low_complexity Low_complexity 1 21 0 1981 151 3 7 chr6 1486644 1486942 -180928300 + AluJo SINE Alu 1 297 -15 462 264 85 0 chr6 1487988 1488117 -180927125 - Charlie8 DNA MER1_type -2273 144 5 294 333 67 9 chr6 1490197 1490302 -180924940 + MIR3 SINE MIR 95 205 -3 536 287 96 57 chr6 1490606 1490815 -180924427 - MIR SINE MIR -31 231 15 828 136 8 15 chr6 1491469 1491601 -180923641 + AluSq/x SINE Alu 1 131 -181 280 275 22 11 chr6 1491803 1491894 -180923348 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1492617 1492642 -180922600 + (TG)n Simple_repeat Simple_repeat 2 26 0 404 129 14 14 chr6 1492659 1492729 -180922513 - FLAM SINE Alu -19 124 55 2201 126 3 0 chr6 1492770 1493080 -180922162 - AluSx SINE Alu -1 311 1 730 135 23 23 chr6 1493089 1493222 -180922020 - FLAM_C SINE Alu 0 133 1 618 284 12 0 chr6 1493749 1493918 -180921324 - MER58A DNA MER1_type -9 215 45 191 200 0 100 chr6 1494116 1494166 -180921076 - MIR SINE MIR -2 260 216 720 194 58 13 chr6 1494196 1494351 -180920891 + FRAM SINE Alu 1 161 -15 366 269 112 30 chr6 1494407 1494541 -180920701 - MIR SINE MIR -96 166 22 299 315 112 12 chr6 1494562 1494732 -180920510 + MIR SINE MIR 43 228 -34 1645 148 33 23 chr6 1494799 1495104 -180920138 + MER44D DNA MER2_type 32 609 0 4028 184 81 12 chr6 1495120 1496785 -180918457 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1496785 1496808 -180918434 + AT_rich Low_complexity Low_complexity 1 23 0 454 260 71 63 chr6 1496814 1497068 -180918174 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1497117 1497145 -180918097 + AT_rich Low_complexity Low_complexity 1 28 0 197 231 0 58 chr6 1497241 1497293 -180917949 - L2 LINE L2 0 3313 3265 * 287 234 0 0 chr6 1497270 1497338 -180917904 + MIR SINE MIR 24 91 -117 621 256 106 0 chr6 1497343 1497523 -180917719 + MIR SINE MIR 64 262 0 257 271 158 55 chr6 1497535 1497933 -180917309 - L2 LINE L2 -56 3257 2819 1468 167 23 20 chr6 1498054 1498354 -180916888 - L1MA5 LINE L1 -19 6281 5981 260 271 35 0 chr6 1498428 1498513 -180916729 - MLT1H1 LTR MaLR -4 551 464 258 318 37 9 chr6 1498701 1498808 -180916434 - MLT1H LTR MaLR -337 212 103 822 256 56 16 chr6 1499432 1499682 -180915560 + MIR SINE MIR 2 261 -1 1227 120 69 0 chr6 1499682 1499898 -180915344 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1776 89 44 173 chr6 1499900 1500106 -180915136 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 2095 142 0 0 chr6 1500106 1500417 -180914825 - AluSx SINE Alu -1 311 1 1776 89 44 173 chr6 1500417 1500639 -180914603 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2244 110 3 3 chr6 1502244 1502545 -180912697 - AluSq SINE Alu -12 301 1 1877 159 3 16 chr6 1502562 1502877 -180912365 + AluJb SINE Alu 1 311 -1 1021 181 0 0 chr6 1503260 1503437 -180911805 - AluJ SINE Alu -16 296 120 43294 32 3 1 chr6 1503439 1509575 -180905667 - L1PA3 LINE L1 -8 6147 1 748 187 0 15 chr6 1509581 1509715 -180905527 - AluJ SINE Alu -170 132 1 244 296 51 0 chr6 1509855 1509953 -180905289 + MIR SINE MIR 105 207 -55 2771 199 65 21 chr6 1510240 1510328 -180904914 + L1MB3 LINE L1 5495 5578 -605 2242 112 3 0 chr6 1510328 1510622 -180904620 + AluSx SINE Alu 1 295 -17 2771 199 65 21 chr6 1510622 1511191 -180904051 + L1MB3 LINE L1 5578 6181 -2 875 129 0 30 chr6 1512120 1512252 -180902990 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1512915 1512953 -180902289 + C-rich Low_complexity Low_complexity 141 180 0 492 270 263 16 chr6 1512955 1513533 -180901709 + L2 LINE L2 1928 2648 -666 191 254 0 16 chr6 1513929 1513992 -180901250 + L2 LINE L2 3198 3259 -54 254 157 14 57 chr6 1514106 1514176 -180901066 + L1ME1 LINE L1 5363 5426 -740 375 157 36 0 chr6 1514176 1514259 -180900983 + L1MB3 LINE L1 6096 6181 -2 1660 248 22 72 chr6 1514274 1514705 -180900537 + L1ME1 LINE L1 5410 5798 -368 1908 144 53 0 chr6 1514705 1514989 -180900253 + AluSx SINE Alu 1 299 -13 1660 248 22 72 chr6 1514989 1515227 -180900015 + L1ME1 LINE L1 5798 6046 -120 549 253 6 77 chr6 1515393 1515509 -180899733 + MER45A DNA AcHobo 1 102 -1479 2237 96 0 0 chr6 1515509 1515824 -180899418 - AluSg SINE Alu 0 315 1 549 253 6 77 chr6 1515824 1515888 -180899354 + MER45A DNA AcHobo 102 169 -9 628 253 135 47 chr6 1516408 1516705 -180898537 + MER2 DNA MER2_type 2 324 -21 698 131 57 0 chr6 1516774 1516896 -180898346 + LOR1a LTR ERV1 1 129 -368 * 1467 142 80 24 chr6 1516894 1516963 -180898279 + LOR1b LTR ERV1 158 222 -239 2224 131 56 8 chr6 1516963 1517321 -180897921 - THE1C LTR MaLR 0 375 1 1467 142 80 24 chr6 1517321 1517539 -180897703 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1517576 1517651 -180897591 - MER5A DNA MER1_type -89 100 9 226 296 45 45 chr6 1517712 1517800 -180897442 + MIR SINE MIR 44 131 -131 428 248 67 0 chr6 1517900 1518005 -180897237 - MIR SINE MIR -98 164 53 1824 145 0 4 chr6 1518017 1518286 -180896956 - AluJb SINE Alu -13 299 32 369 222 118 30 chr6 1518500 1518635 -180896607 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1518797 1518825 -180896417 + AT_rich Low_complexity Low_complexity 1 28 0 411 329 66 56 chr6 1518845 1519149 -180896093 - L1ME LINE L1 -542 5579 5273 1999 104 26 0 chr6 1519200 1519469 -180895773 + AluSx SINE Alu 30 305 -7 245 318 15 8 chr6 1519553 1519685 -180895557 - L1ME LINE L1 -1071 5075 4943 867 251 77 40 chr6 1519776 1520155 -180895087 - L1ME1 LINE L1 -15 6151 5759 1687 206 113 53 chr6 1520155 1520679 -180894563 + LTR60 LTR ERV1 1 555 -31 930 265 69 57 chr6 1520746 1521222 -180894020 - L1ME1 LINE L1 -419 5765 5284 329 328 36 34 chr6 1521250 1521607 -180893635 - L1ME LINE L1 -1299 4847 4490 3696 109 17 67 chr6 1521970 1522073 -180893169 - L1PB3 LINE L1 -23 6131 6024 1991 158 0 3 chr6 1522073 1522376 -180892866 - AluJb SINE Alu -10 302 1 3696 109 17 67 chr6 1522376 1522478 -180892764 - L1PB3 LINE L1 -130 6024 5624 598 262 60 84 chr6 1522478 1522660 -180892582 - L1MC2 LINE L1 -391 5953 5768 2738 32 0 13 chr6 1522660 1522975 -180892267 - AluY SINE Alu 0 311 1 598 262 60 84 chr6 1522975 1523304 -180891938 - L1MC2 LINE L1 -576 5768 5454 496 237 132 7 chr6 1523749 1523901 -180891341 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1523965 1524115 -180891127 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1524371 1524516 -180890726 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1525132 1525441 -180889801 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1525444 1525701 -180889541 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1525706 1525817 -180889425 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1525985 1526230 -180889012 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1526240 1526870 -180888372 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1526870 1527406 -180887836 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1527406 1527482 -180887760 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1527503 1527733 -180887509 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1527735 1528321 -180886921 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1528323 1529569 -180885673 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1529571 1529711 -180885531 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1529743 1530032 -180885210 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1530111 1530183 -180885059 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1530183 1531065 -180884177 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1531074 1531293 -180883949 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1531298 1531394 -180883848 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1531399 1532357 -180882885 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1532354 1532566 -180882676 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1532579 1532705 -180882537 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1532719 1532849 -180882393 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1532849 1532946 -180882296 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1532950 1533116 -180882126 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1533117 1534553 -180880689 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1534553 1534860 -180880382 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1534860 1534895 -180880347 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1534902 1535770 -180879472 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1535770 1536068 -180879174 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1536068 1536547 -180878695 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1536547 1536981 -180878261 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1536981 1537570 -180877672 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1537570 1537868 -180877374 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1537868 1538030 -180877212 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1538030 1538438 -180876804 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1538442 1538588 -180876654 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1538588 1538749 -180876493 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1538749 1538899 -180876343 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1539339 1539634 -180875608 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1540220 1540501 -180874741 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1540501 1540789 -180874453 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1540789 1541054 -180874188 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1541266 1541623 -180873619 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1541623 1541918 -180873324 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1541918 1542157 -180873085 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1542157 1542454 -180872788 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1542454 1542775 -180872467 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1542885 1543427 -180871815 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1543427 1543719 -180871523 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1543719 1543868 -180871374 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1544127 1544351 -180870891 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1545770 1545888 -180869354 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1545888 1546423 -180868819 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1546423 1546508 -180868734 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1547301 1547491 -180867751 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1547500 1548002 -180867240 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1548526 1549111 -180866131 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1549583 1550300 -180864942 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1550300 1550848 -180864394 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1550851 1550873 -180864369 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1550873 1551187 -180864055 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1551511 1551570 -180863672 + (CATG)n Simple_repeat Simple_repeat 2 62 0 214 320 19 0 chr6 1601776 1601879 -180813363 + L2 LINE L2 2571 2675 -639 3989 170 33 15 chr6 1601889 1602549 -180812693 - L1MB3 LINE L1 -10 6173 5496 2442 51 0 0 chr6 1602549 1602844 -180812398 - AluY SINE Alu -14 297 3 3989 170 33 15 chr6 1602844 1602937 -180812305 - L1MB3 LINE L1 -687 5496 5406 893 243 195 52 chr6 1603409 1603890 -180811352 + L2 LINE L2 2745 3310 -3 2704 191 98 3 chr6 1605359 1605960 -180809282 - L1MB3 LINE L1 -1984 4162 3505 231 339 0 0 chr6 1606216 1606278 -180808964 + L2 LINE L2 3193 3254 -18 369 0 0 0 chr6 1606464 1606505 -180808737 + (CA)n Simple_repeat Simple_repeat 2 42 0 2003 85 43 3 chr6 1606507 1606789 -180808453 - AluSx SINE Alu -19 293 1 388 274 8 8 chr6 1606961 1607078 -180808164 - MIR SINE MIR -69 139 23 327 274 0 14 chr6 1607551 1607624 -180807618 + L2 LINE L2 3242 3313 0 1769 159 0 0 chr6 1608162 1608438 -180806804 + AluJb SINE Alu 1 276 -36 1139 120 98 0 chr6 1608542 1608726 -180806516 - MER2 DNA MER2_type -135 210 9 347 340 146 14 chr6 1608797 1609091 -180806151 - L1M4 LINE L1 -1303 4843 4511 201 39 0 0 chr6 1609125 1609151 -180806091 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 505 347 61 33 chr6 1609220 1609580 -180805662 - L1M4 LINE L1 -1839 4307 3938 1990 216 48 44 chr6 1609584 1610265 -180804977 + L1MC5 LINE L1 7184 7867 -94 1092 157 63 0 chr6 1610818 1611009 -180804233 - L1M3 LINE L1 -698 5482 5280 196 263 232 21 chr6 1611012 1611206 -180804036 + L2 LINE L2 2694 2928 -386 193 258 226 11 chr6 1611384 1611477 -180803765 + L2 LINE L2 3201 3313 0 285 226 16 16 chr6 1611531 1611593 -180803649 - MIR SINE MIR -8 254 193 234 170 85 0 chr6 1612311 1612358 -180802884 + L1MB3 LINE L1 5779 5829 -342 411 138 0 0 chr6 1612359 1612417 -180802825 + 7SLRNA srpRNA srpRNA 210 267 -53 186 310 126 0 chr6 1612700 1612787 -180802455 + L2 LINE L2 3123 3220 -52 2317 201 74 48 chr6 1612872 1613454 -180801788 + LTR31 LTR ERV1 1 597 -22 1613 101 0 0 chr6 1613908 1614125 -180801117 - AluSc SINE Alu -92 217 1 4012 180 43 10 chr6 1614135 1614919 -180800323 - L1MB3 LINE L1 0 6183 5374 2326 213 29 26 chr6 1614937 1615520 -180799722 - L1M3 LINE L1 -983 5163 4579 769 88 0 0 chr6 1615621 1615723 -180799519 + AluSg/x SINE Alu 200 301 -9 299 83 0 0 chr6 1615723 1615771 -180799471 + L1MB4 LINE L1 6133 6180 0 265 262 74 49 chr6 1616194 1616316 -180798926 + MIR3 SINE MIR 61 185 -23 1372 167 47 7 chr6 1618199 1618475 -180796767 + L1MB3 LINE L1 5887 6173 -10 1493 208 22 44 chr6 1619472 1619833 -180795409 - MLT1A1 LTR MaLR -12 353 1 1053 157 25 10 chr6 1619837 1620035 -180795207 + L1MB3 LINE L1 5938 6138 -45 2102 118 0 10 chr6 1620036 1620342 -180794900 + AluSx SINE Alu 1 303 -9 711 245 61 25 chr6 1620519 1620715 -180794527 - L1MC/D LINE L1 -2100 5708 5506 721 226 0 7 chr6 1620717 1620863 -180794379 - FAM SINE Alu -10 175 31 400 278 43 62 chr6 1620933 1621095 -180794147 - L1MC/D LINE L1 -2386 5422 5264 282 236 112 34 chr6 1621585 1621674 -180793568 + MIR SINE MIR 117 212 -50 1374 167 44 104 chr6 1621820 1622138 -180793104 + AluJo SINE Alu 3 301 -1 2290 94 7 0 chr6 1622144 1622453 -180792789 + AluY SINE Alu 1 311 0 622 176 0 15 chr6 1622750 1622886 -180792356 + CT-rich Low_complexity Low_complexity 2 135 0 782 243 0 0 chr6 1622903 1623055 -180792187 - AluJb SINE Alu -4 308 157 812 127 0 8 chr6 1623064 1623190 -180792052 + AluJo SINE Alu 27 151 -161 328 176 0 0 chr6 1623190 1623241 -180792001 - Alu SINE Alu -257 51 1 686 253 143 13 chr6 1623488 1623725 -180791517 - Charlie2 DNA MER1_type -2270 592 325 1093 170 38 0 chr6 1623761 1623973 -180791269 + L1MB3 LINE L1 5956 6175 -8 659 192 8 31 chr6 1624231 1624391 -180790851 - AluSg/x SINE Alu 0 314 158 334 345 79 52 chr6 1624662 1625182 -180790060 - L2 LINE L2 -201 3071 2522 328 315 69 42 chr6 1625182 1625398 -180789844 + MIR SINE MIR 3 224 -38 247 302 108 16 chr6 1625491 1625620 -180789622 - L2 LINE L2 -939 2375 2235 260 305 12 0 chr6 1626822 1626904 -180788338 - MER94 DNA DNA -4 130 48 1044 241 55 107 chr6 1626919 1627418 -180787824 + LTR45B LTR ERV1 3 512 -13 903 150 0 24 chr6 1627916 1628083 -180787159 + AluJo SINE Alu 135 297 -15 419 232 76 67 chr6 1628102 1628341 -180786901 - MLT1J1 LTR MaLR -64 386 141 466 259 77 18 chr6 1628573 1628743 -180786499 + L2 LINE L2 2145 2324 -990 186 43 0 0 chr6 1629002 1629025 -180786217 + (A)n Simple_repeat Simple_repeat 1 23 0 1306 26 0 0 chr6 1631468 1631620 -180783622 + L1PA4 LINE L1 6002 6153 -2 957 242 76 103 chr6 1632001 1632893 -180782349 - L1ME3A LINE L1 -99 6071 5190 1182 207 21 13 chr6 1632893 1633130 -180782112 + MER8 DNA MER2_type 1 239 0 957 242 76 103 chr6 1633130 1633342 -180781900 - L1ME3A LINE L1 -980 5190 4974 1494 206 92 36 chr6 1633350 1633796 -180781446 - L1ME2 LINE L1 -23 6141 5671 249 280 0 0 chr6 1635140 1635222 -180780020 - L1ME3A LINE L1 -2335 3811 3730 32 0 0 0 chr6 1635852 1635884 -180779358 + AT_rich Low_complexity Low_complexity 1 32 0 768 147 47 8 chr6 1635891 1636020 -180779222 + AluJb SINE Alu 1 134 -178 244 119 79 8 chr6 1636020 1636034 -180779208 + (TA)n Simple_repeat Simple_repeat 2 14 -122 234 0 0 0 chr6 1636034 1636060 -180779182 + (CA)n Simple_repeat Simple_repeat 2 27 0 244 119 79 8 chr6 1636060 1636171 -180779071 + (TA)n Simple_repeat Simple_repeat 14 136 0 955 159 12 6 chr6 1636180 1636343 -180778899 + AluSg/x SINE Alu 129 292 -20 976 183 61 0 chr6 1636383 1636580 -180778662 - MER2 DNA MER2_type -136 209 1 883 264 21 74 chr6 1639693 1639802 -180775440 - L2 LINE L2 -1405 1909 1796 1714 130 0 60 chr6 1639802 1640117 -180775125 + AluSx SINE Alu 1 296 -16 883 264 21 74 chr6 1640117 1640428 -180774814 - L2 LINE L2 -1518 1796 1511 284 254 0 0 chr6 1640510 1640573 -180774669 - L3 LINE CR1 -170 1407 1345 185 386 65 11 chr6 1640639 1640823 -180774419 + L2 LINE L2 2824 3017 -255 240 35 0 0 chr6 1641761 1641790 -180773452 + (A)n Simple_repeat Simple_repeat 1 29 0 190 279 177 0 chr6 1642595 1642674 -180772568 - MIR3 SINE MIR -1 207 115 211 294 149 52 chr6 1642778 1642972 -180772270 + L3 LINE CR1 1227 1439 -138 405 232 45 9 chr6 1643153 1643265 -180771977 - L1MB7 LINE L1 -31 6153 6038 362 268 106 8 chr6 1645294 1645417 -180769825 - MIR SINE MIR -46 216 82 285 274 29 39 chr6 1646052 1646154 -180769088 - MIR SINE MIR -44 218 118 340 150 0 0 chr6 1647010 1647070 -180768172 + L1MC2 LINE L1 6272 6331 -13 342 164 33 0 chr6 1648424 1648485 -180766757 - MADE1 DNA Mariner 0 80 18 2158 112 0 0 chr6 1648491 1648786 -180766456 + AluSc SINE Alu 1 295 -14 287 70 23 0 chr6 1648789 1648832 -180766410 - MADE1 DNA Mariner -34 46 3 2253 90 0 16 chr6 1650512 1650824 -180764418 - AluSx SINE Alu -5 307 1 189 83 0 0 chr6 1651347 1651371 -180763871 + L3 LINE CR1 440 463 -1114 1952 126 11 0 chr6 1651720 1652026 -180763216 - AluSx SINE Alu 0 309 1 836 211 11 17 chr6 1652329 1652509 -180762733 - L1M4 LINE L1 -1945 4201 4023 2287 74 0 7 chr6 1652509 1652806 -180762436 + AluY SINE Alu 1 295 -16 1144 88 0 2 chr6 1652806 1652959 -180762283 + L1PA5 LINE L1 3294 3445 -2701 9309 49 4 22 chr6 1652959 1654896 -180760346 + L1PA5 LINE L1 4228 6152 -2 1144 88 0 2 chr6 1654896 1654914 -180760328 + L1PA5 LINE L1 3445 3462 -2684 870 202 56 20 chr6 1655032 1655230 -180760012 + L1MCa LINE L1 312 516 -5910 829 262 90 11 chr6 1655222 1655501 -180759741 - L1MCa LINE L1 -6105 321 21 * 180 158 0 0 chr6 1656871 1656909 -180758333 + A-rich Low_complexity Low_complexity 5 42 0 335 230 9 0 chr6 1657991 1658104 -180757138 + (CA)n Simple_repeat Simple_repeat 2 115 0 1496 171 4 4 chr6 1658678 1658935 -180756307 - AluJo SINE Alu -55 257 1 1438 35 0 0 chr6 1659875 1660045 -180755197 - AluY SINE Alu -141 170 1 222 385 77 0 chr6 1660665 1660821 -180754421 + MIR SINE MIR 17 184 -78 1667 232 113 18 chr6 1660845 1661448 -180753794 + L1ME1 LINE L1 5502 6161 -5 1740 108 134 11 chr6 1661738 1662006 -180753236 + AluSx SINE Alu 1 301 -1 21 0 0 0 chr6 1662107 1662128 -180753114 + AT_rich Low_complexity Low_complexity 1 21 0 184 326 97 35 chr6 1663678 1663822 -180751420 - L3b LINE CR1 -55 1528 1376 219 269 134 74 chr6 1663945 1664094 -180751148 - MIR SINE MIR -21 187 30 322 311 16 16 chr6 1664158 1664280 -180750962 - L2 LINE L2 -32 3281 3160 287 331 86 41 chr6 1664681 1664926 -180750316 + L2 LINE L2 2840 3095 -177 197 43 0 0 chr6 1665059 1665082 -180750160 + (T)n Simple_repeat Simple_repeat 1 23 0 339 333 215 4 chr6 1665368 1665596 -180749646 + L3 LINE CR1 829 1104 -473 474 333 77 48 chr6 1665658 1665931 -180749311 - L2 LINE L2 -5 3267 2987 691 223 22 119 chr6 1666135 1666404 -180748838 - MIR SINE MIR -2 260 18 1047 166 0 0 chr6 1666705 1666987 -180748255 + (TGGA)n Simple_repeat Simple_repeat 1 282 0 220 189 0 0 chr6 1667004 1667041 -180748201 + GA-rich Low_complexity Low_complexity 1 37 0 335 296 151 20 chr6 1667041 1667193 -180748049 - MIR3 SINE MIR -7 201 30 691 297 62 68 chr6 1667232 1667616 -180747626 - MLT1I LTR MaLR -3 406 25 270 317 110 24 chr6 1668098 1668262 -180746980 - MLT1I LTR MaLR 0 409 232 2728 112 60 0 chr6 1668551 1668953 -180746289 - MSTA LTR MaLR -2 426 1 569 276 35 0 chr6 1669041 1669211 -180746031 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1669555 1669594 -180745648 + AT_rich Low_complexity Low_complexity 1 39 0 1398 156 30 50 chr6 1669594 1669758 -180745484 - AluJo SINE Alu -16 296 139 1722 87 9 0 chr6 1669758 1669988 -180745254 - AluSp SINE Alu -11 302 71 1398 156 30 50 chr6 1669988 1670125 -180745117 - AluJo SINE Alu -173 139 1 240 257 29 0 chr6 1670676 1670746 -180744496 + LTR67 LTR ERVL 431 502 -55 626 268 168 9 chr6 1670878 1671277 -180743965 + Charlie2 DNA MER1_type 74 589 -2273 915 221 53 90 chr6 1671320 1671520 -180743722 + Charlie2 DNA MER1_type 2030 2236 -626 1515 162 49 8 chr6 1671520 1671785 -180743457 + AluJo SINE Alu 1 276 -36 915 221 53 90 chr6 1671785 1672072 -180743170 + Charlie2 DNA MER1_type 2236 2499 -363 1267 205 52 46 chr6 1672072 1672399 -180742843 + L1MB8 LINE L1 5849 6177 -1 1564 171 3 24 chr6 1672408 1672700 -180742542 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1672709 1672734 -180742508 + (CA)n Simple_repeat Simple_repeat 2 26 0 455 254 30 60 chr6 1672734 1672959 -180742283 + Charlie2 DNA MER1_type 2502 2721 -141 1600 273 133 4 chr6 1672960 1673455 -180741787 + MER69 DNA AcHobo 1 559 -667 226 242 152 38 chr6 1673425 1673557 -180741685 + MER69 DNA AcHobo 2254 2400 -126 * 359 134 20 174 chr6 1673549 1673615 -180741627 + Charlie2 DNA MER1_type 2736 2768 -94 1649 114 0 0 chr6 1673615 1673843 -180741399 + AluSc SINE Alu 65 292 -17 359 134 20 174 chr6 1673843 1673925 -180741317 + Charlie2 DNA MER1_type 2768 2861 -1 1794 285 88 51 chr6 1674037 1674363 -180740879 + HERVL LTR ERVL 2050 2362 -3402 2279 93 3 0 chr6 1674363 1674673 -180740569 + AluY SINE Alu 1 311 0 1794 285 88 51 chr6 1674673 1675171 -180740071 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1675283 1675329 -180739913 + (TG)n Simple_repeat Simple_repeat 1 46 0 1406 149 29 58 chr6 1675391 1675700 -180739542 + AluJo SINE Alu 1 300 -12 271 231 103 57 chr6 1675694 1675788 -180739454 + HERVL LTR ERVL 3132 3229 -2535 391 328 54 17 chr6 1675902 1676148 -180739094 + HERVL LTR ERVL 5111 5369 -221 442 313 20 7 chr6 1677000 1677150 -180738092 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1677554 1677612 -180737630 + CT-rich Low_complexity Low_complexity 3 56 0 2242 79 3 7 chr6 1678249 1678553 -180736689 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1679661 1679706 -180735536 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 804 166 14 21 chr6 1679706 1679851 -180735391 - FRAM SINE Alu -32 144 1 308 299 39 26 chr6 1679893 1680047 -180735195 - MIR SINE MIR -19 243 88 2164 97 10 0 chr6 1680324 1680623 -180734619 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1680623 1680660 -180734582 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1680900 1680925 -180734317 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1987 151 143 5 chr6 1681064 1681436 -180733806 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1681455 1681483 -180733759 + AT_rich Low_complexity Low_complexity 1 28 0 1866 151 0 0 chr6 1681483 1681768 -180733474 - AluSx SINE Alu -27 285 1 1481 229 65 26 chr6 1681771 1682338 -180732904 - L1MC5 LINE L1 -58 7903 7315 334 305 124 29 chr6 1682484 1682668 -180732574 + MIR SINE MIR 10 208 -54 789 204 56 45 chr6 1682691 1683081 -180732161 - MSTD LTR MaLR -52 344 1 971 185 49 19 chr6 1683710 1683915 -180731327 + MIR SINE MIR 24 234 -28 245 325 112 48 chr6 1684140 1684346 -180730896 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1684660 1684962 -180730280 - L1ME3A LINE L1 -232 5938 5647 275 211 35 0 chr6 1684986 1685043 -180730199 + L2 LINE L2 3214 3272 0 268 269 86 107 chr6 1685696 1685893 -180729349 - MLT1L LTR MaLR -415 200 8 2370 69 3 28 chr6 1686819 1687138 -180728104 + AluY SINE Alu 1 311 0 1000 256 78 83 chr6 1687219 1688013 -180727229 + L1MEc LINE L1 827 1617 -4779 1601 166 29 16 chr6 1688013 1688321 -180726921 + AluJo SINE Alu 1 312 0 1000 256 78 83 chr6 1688321 1688497 -180726745 + L1MEc LINE L1 1617 1792 -4604 1398 208 46 8 chr6 1688558 1688909 -180726333 - L1M4 LINE L1 -1394 5563 5200 816 92 108 0 chr6 1688933 1689053 -180726189 + AluSq/x SINE Alu 1 133 -180 2167 113 3 0 chr6 1689078 1689380 -180725862 + AluSp SINE Alu 1 303 -10 6002 114 28 3 chr6 1689387 1689600 -180725642 - L1M1 LINE L1 -4099 3466 3260 1771 164 13 13 chr6 1689600 1689904 -180725338 - AluJb SINE Alu -6 306 3 6002 114 28 3 chr6 1689904 1690648 -180724594 - L1M1 LINE L1 -4305 3260 2485 5478 239 38 32 chr6 1690653 1692186 -180723056 - L1M4 LINE L1 -2451 4506 3018 807 50 0 0 chr6 1692186 1692287 -180722955 + L1PA5 LINE L1 6053 6153 -1 5478 239 38 32 chr6 1692287 1692833 -180722409 - L1M4 LINE L1 -3939 3018 2476 7653 223 52 20 chr6 1693013 1695298 -180719944 - L1M4 LINE L1 -4550 2409 9 784 239 117 4 chr6 1695454 1695823 -180719419 + MLT1G LTR MaLR 144 589 -1 815 218 88 10 chr6 1696455 1696648 -180718594 - Charlie8 DNA MER1_type -2209 208 1 244 292 0 0 chr6 1701919 1701991 -180713251 + L3 LINE CR1 1080 1151 -426 254 309 95 16 chr6 1704271 1704523 -180710719 + L1ME LINE L1 5615 5886 -284 2047 124 7 7 chr6 1704540 1704839 -180710403 + AluSq SINE Alu 1 299 -14 906 330 67 53 chr6 1705074 1705223 -180710019 + L1MC4a LINE L1 4410 4556 -1590 2247 93 0 3 chr6 1705223 1705525 -180709717 + AluSx SINE Alu 1 301 -11 906 330 67 53 chr6 1705525 1706142 -180709100 + L1MC4a LINE L1 4556 5186 -960 340 162 20 40 chr6 1706159 1706258 -180708984 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1706274 1706330 -180708912 + (CA)n Simple_repeat Simple_repeat 1 56 0 1445 277 97 11 chr6 1706448 1707113 -180708129 + L1MC4a LINE L1 5175 5398 -748 1779 138 13 16 chr6 1709231 1709543 -180705699 - AluJo SINE Alu -1 311 1 354 211 24 8 chr6 1709747 1710002 -180705240 + (TG)n Simple_repeat Simple_repeat 1 259 0 1996 138 0 0 chr6 1710907 1711203 -180704039 - AluSx SINE Alu -16 296 1 252 228 152 51 chr6 1711205 1711284 -180703958 - L2 LINE L2 -2 3270 3184 224 265 20 0 chr6 1711575 1711624 -180703618 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1711721 1711745 -180703497 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 231 271 106 0 chr6 1712460 1712545 -180702697 - MER103 DNA DNA -58 108 15 1443 230 83 49 chr6 1713338 1713606 -180701636 - MER82 DNA MER2_type -203 450 160 1672 167 16 32 chr6 1713606 1713918 -180701324 + AluJo SINE Alu 1 307 -5 1443 230 83 49 chr6 1713918 1714080 -180701162 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1714902 1714956 -180700286 + (CA)n Simple_repeat Simple_repeat 1 54 0 1720 181 48 0 chr6 1715012 1715343 -180699899 + L1PA16 LINE L1 5802 6148 -18 552 245 10 50 chr6 1715348 1715548 -180699694 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1716413 1716448 -180698794 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 312 54 48 chr6 1718206 1718392 -180696850 + Charlie2 DNA MER1_type 30 216 -2566 498 165 0 0 chr6 1719199 1719278 -180695964 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1723076 1723110 -180692132 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1723109 1723129 -180692113 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1723129 1723187 -180692055 + (TA)n Simple_repeat Simple_repeat 2 59 0 203 138 0 0 chr6 1725086 1725115 -180690127 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 191 270 48 0 chr6 1725546 1725609 -180689633 + L2 LINE L2 3207 3272 0 399 268 108 13 chr6 1725616 1725773 -180689469 + MER104 DNA Tc2 2 173 -7 417 288 78 13 chr6 1725798 1725951 -180689291 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1732265 1732327 -180682915 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1732570 1732619 -180682623 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1732903 1732981 -180682261 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1733108 1733139 -180682103 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1733609 1733650 -180681592 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1733899 1733938 -180681304 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1734153 1734203 -180681039 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1734269 1734294 -180680948 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1734368 1734392 -180680850 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1734492 1734512 -180680730 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1737121 1737144 -180678098 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1741279 1741329 -180673913 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1744985 1745141 -180670101 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1745780 1745857 -180669385 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1747413 1747440 -180667802 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1747786 1747967 -180667275 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1748269 1748330 -180666912 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1754220 1754266 -180660976 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1754865 1755169 -180660073 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1755180 1755478 -180659764 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1755551 1755654 -180659588 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1755969 1756331 -180658911 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1757235 1757549 -180657693 - L2 LINE L2 -562 2752 2434 253 333 81 16 chr6 1760431 1760554 -180654688 - MIR SINE MIR -128 134 4 271 333 74 22 chr6 1761927 1762062 -180653180 - L2 LINE L2 -219 3053 2912 226 227 109 126 chr6 1762158 1762190 -180653052 + MIR SINE MIR 22 53 -209 1709 151 37 0 chr6 1762190 1762486 -180652756 + AluJb SINE Alu 1 306 0 226 227 109 126 chr6 1762486 1762571 -180652671 + MIR SINE MIR 53 138 -124 229 280 173 33 chr6 1763264 1763414 -180651828 - L2 LINE L2 -54 3259 3089 310 115 33 0 chr6 1764289 1764350 -180650892 + CT-rich Low_complexity Low_complexity 2 64 0 2242 104 0 25 chr6 1764736 1765053 -180650189 - AluSx SINE Alu -3 309 1 246 218 103 0 chr6 1766089 1766167 -180649075 + L1MA8 LINE L1 5961 6046 -245 877 236 46 4 chr6 1766177 1766414 -180648828 + L1MB8 LINE L1 5932 6178 0 322 268 57 81 chr6 1767406 1767515 -180647727 - MIR SINE MIR -55 153 46 2338 79 0 13 chr6 1767515 1767818 -180647424 - AluSg SINE Alu -11 299 1 322 268 57 81 chr6 1767818 1767831 -180647411 - MIR SINE MIR -162 46 34 273 304 161 0 chr6 1768499 1768611 -180646631 + L2 LINE L2 3177 3306 -7 1397 167 151 12 chr6 1769017 1769268 -180645974 - AluJo SINE Alu -16 286 1 183 350 30 10 chr6 1770377 1770477 -180644765 + L2 LINE L2 2940 3041 -231 331 228 53 61 chr6 1772600 1772714 -180642528 + MIR3 SINE MIR 78 190 -18 1905 143 3 19 chr6 1773158 1773465 -180641777 - AluSx SINE Alu -10 302 1 241 324 115 14 chr6 1774295 1774434 -180640808 + MIR SINE MIR 110 262 0 2353 76 0 3 chr6 1824853 1825142 -180590100 - AluY SINE Alu -23 288 1 949 164 12 6 chr6 1827932 1828097 -180587145 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1828475 1828507 -180586735 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1829586 1829623 -180585619 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1832887 1833068 -180582174 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1833068 1833088 -180582154 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1833088 1833211 -180582031 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1833233 1833336 -180581906 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1833341 1833555 -180581687 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1834154 1834411 -180580831 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1836260 1836556 -180578686 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1836573 1836637 -180578605 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1837667 1837726 -180577516 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1839046 1839070 -180576172 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1839563 1839674 -180575568 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1839674 1839723 -180575519 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1839771 1839814 -180575428 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1841031 1841284 -180573958 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1841366 1842870 -180572372 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1842870 1843178 -180572064 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1843178 1843427 -180571815 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1844359 1844690 -180570552 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1846083 1846366 -180568876 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1847141 1847194 -180568048 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1848312 1848666 -180566576 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1848684 1849042 -180566200 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1850047 1850137 -180565105 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1851099 1851396 -180563846 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1851760 1851842 -180563400 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1851873 1852298 -180562944 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1852353 1852665 -180562577 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1852690 1852743 -180562499 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1852748 1853044 -180562198 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1853549 1853718 -180561524 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1854096 1854385 -180560857 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1854954 1854979 -180560263 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1855791 1855828 -180559414 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1857514 1857824 -180557418 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1858284 1858334 -180556908 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1859022 1859306 -180555936 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1859409 1859557 -180555685 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1860130 1860443 -180554799 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1860658 1860945 -180554297 - AluJo SINE Alu -15 297 11 30399 98 28 27 chr6 1861116 1862308 -180552934 + L1P3 LINE L1 11 1201 -5286 2184 115 0 0 chr6 1862308 1862616 -180552626 - AluSc SINE Alu 0 308 1 30399 98 28 27 chr6 1862616 1866996 -180548246 + L1P3 LINE L1 1201 5712 -775 591 249 173 76 chr6 1867023 1867090 -180548152 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1867090 1867396 -180547846 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1867396 1867869 -180547373 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1868607 1868906 -180546336 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1869335 1869376 -180545866 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1869379 1869538 -180545704 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1869543 1869608 -180545634 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1869616 1869704 -180545538 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1869753 1869919 -180545323 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1870084 1870240 -180545002 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1870392 1870491 -180544751 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1876397 1876524 -180538718 - MIR3 SINE MIR -63 145 3 1288 139 130 0 chr6 1879393 1879601 -180535641 + MER46A DNA MER2_type 1 235 -1 2001 115 3 73 chr6 1880520 1880850 -180534392 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1881858 1881880 -180533362 + AT_rich Low_complexity Low_complexity 1 22 0 310 262 124 43 chr6 1882136 1882355 -180532887 + MIR SINE MIR 12 257 -5 255 261 159 11 chr6 1886160 1886248 -180528994 - MER91B DNA MER1_type 0 190 90 307 263 79 0 chr6 1886264 1886340 -180528902 - MER91B DNA MER1_type -61 129 48 180 375 58 10 chr6 1887206 1887230 -180528012 + MER5A DNA MER1_type 4 25 -164 1654 163 46 18 chr6 1887230 1887512 -180527730 + AluJo SINE Alu 1 290 -22 180 375 58 10 chr6 1887512 1887591 -180527651 + MER5A DNA MER1_type 25 112 -77 354 233 160 33 chr6 1891067 1891217 -180524025 + MIR SINE MIR 82 250 -12 271 337 51 10 chr6 1893574 1893672 -180521570 - MIR SINE MIR -13 249 148 1762 158 7 11 chr6 1893696 1893975 -180521267 + AluJb SINE Alu 1 278 -34 189 107 0 0 chr6 1893980 1894008 -180521234 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 199 359 136 56 chr6 1894110 1894308 -180520934 + L2 LINE L2 3019 3232 -40 1784 88 4 0 chr6 1895016 1895244 -180519998 + AluSg/x SINE Alu 83 311 -1 371 247 315 0 chr6 1896171 1896333 -180518909 - MLT1G LTR MaLR -24 566 354 208 280 112 0 chr6 1898794 1898901 -180516341 + MIR SINE MIR 36 154 -108 22 0 0 0 chr6 1899605 1899627 -180515615 + AT_rich Low_complexity Low_complexity 1 22 0 948 253 110 67 chr6 1899684 1900305 -180514937 - MER21B LTR ERV1 -154 709 57 1957 151 6 13 chr6 1900350 1900662 -180514580 - AluJb SINE Alu -2 310 1 194 330 39 50 chr6 1900808 1900987 -180514255 - L3 LINE CR1 -697 880 704 390 302 0 26 chr6 1901170 1901286 -180513956 - MIR SINE MIR -81 181 69 1953 183 103 19 chr6 1901647 1902057 -180513185 + MLT1D LTR MaLR 1 456 -49 1701 183 35 42 chr6 1902057 1902434 -180512808 - MLT1A2 LTR MaLR 0 374 1 1953 183 103 19 chr6 1902434 1902487 -180512755 + MLT1D LTR MaLR 456 503 -2 1739 272 119 53 chr6 1902647 1903850 -180511392 - HAL1 LINE L1 0 2507 1226 216 213 0 0 chr6 1903912 1903959 -180511283 + L2 LINE L2 2154 2200 -1114 1729 142 0 47 chr6 1905733 1906029 -180509213 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1906257 1906306 -180508936 + (TA)n Simple_repeat Simple_repeat 2 49 0 355 281 22 30 chr6 1907227 1907362 -180507880 + MER5A DNA MER1_type 51 184 -5 1849 161 7 0 chr6 1907830 1908122 -180507120 + MER1B DNA MER1_type 1 294 -45 665 261 22 17 chr6 1908392 1908572 -180506670 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1909062 1909109 -180506133 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1910791 1910813 -180504429 + AT_rich Low_complexity Low_complexity 1 22 0 282 320 8 23 chr6 1911078 1911206 -180504036 + MIR SINE MIR 48 173 -89 1756 115 3 89 chr6 1911258 1911562 -180503680 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1914398 1914423 -180500819 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1916023 1916046 -180499196 + AT_rich Low_complexity Low_complexity 1 23 0 572 281 14 0 chr6 1916268 1916407 -180498835 + Charlie1 DNA MER1_type 1 141 -2620 1130 174 134 13 chr6 1916410 1916709 -180498533 + Charlie1 DNA MER1_type 2427 2761 0 801 185 0 0 chr6 1916823 1916953 -180498289 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1917264 1917319 -180497923 + (CA)n Simple_repeat Simple_repeat 2 56 0 1714 168 4 0 chr6 1917875 1918143 -180497099 - AluJo SINE Alu -20 292 24 307 261 43 0 chr6 1918308 1918377 -180496865 + L2 LINE L2 3146 3217 -55 1264 242 50 25 chr6 1918432 1918874 -180496368 + L1M4 LINE L1 4852 5304 -842 26 0 0 0 chr6 1919490 1919516 -180495726 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1919729 1919752 -180495490 + (TG)n Simple_repeat Simple_repeat 2 24 0 203 274 66 47 chr6 1920870 1920976 -180494266 - L2 LINE L2 -23 3290 3183 2100 120 38 0 chr6 1921115 1921407 -180493835 - AluSx SINE Alu -9 303 1 256 280 175 66 chr6 1922752 1923163 -180492079 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1923294 1923409 -180491833 + GA-rich Low_complexity Low_complexity 3 115 0 1498 172 32 36 chr6 1923765 1924073 -180491169 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1924075 1924110 -180491132 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1925506 1925534 -180489708 + AT_rich Low_complexity Low_complexity 1 28 0 190 304 18 0 chr6 1927008 1927064 -180488178 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1927933 1927971 -180487271 + (CA)n Simple_repeat Simple_repeat 2 40 0 2453 89 0 0 chr6 1929150 1929452 -180485790 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1929513 1929586 -180485656 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1929641 1929713 -180485529 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1929859 1929903 -180485339 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1930302 1930601 -180484641 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1930601 1930623 -180484619 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1930981 1931002 -180484240 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1932428 1932463 -180482779 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1935412 1935637 -180479605 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1935705 1935828 -180479414 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1936283 1936551 -180478691 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1936551 1936862 -180478380 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1936862 1937171 -180478071 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1937609 1937897 -180477345 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1937903 1937952 -180477290 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1937959 1938024 -180477218 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1938475 1939630 -180475612 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1939646 1940072 -180475170 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1940072 1940205 -180475037 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1940253 1940563 -180474679 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1940862 1941055 -180474187 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1941074 1941232 -180474010 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1942817 1942839 -180472403 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1942906 1942967 -180472275 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1942969 1942998 -180472244 - Alu SINE Alu -196 106 78 1349 144 5 14 chr6 1943004 1943212 -180472030 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1943951 1943974 -180471268 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1944334 1944375 -180470867 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1944848 1944884 -180470358 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1945839 1945870 -180469372 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1945932 1946060 -180469182 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1946663 1946991 -180468251 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1951145 1951205 -180464037 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1952845 1953047 -180462195 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1953364 1953552 -180461690 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1953657 1953930 -180461312 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1953934 1953976 -180461266 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1954310 1954608 -180460634 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1954876 1955076 -180460166 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1956056 1956096 -180459146 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1956413 1956747 -180458495 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1956902 1957217 -180458025 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1957906 1958173 -180457069 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1958820 1958883 -180456359 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1959006 1959232 -180456010 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1959430 1959654 -180455588 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1959706 1959931 -180455311 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1962529 1962567 -180452675 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1963536 1963823 -180451419 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1964061 1964365 -180450877 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1965294 1965424 -180449818 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1970493 1970645 -180444597 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1971084 1971456 -180443786 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1972443 1972467 -180442775 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1973099 1973140 -180442102 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1974305 1974334 -180440908 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1974705 1974736 -180440506 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1976446 1976478 -180438764 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1978814 1979109 -180436133 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1979684 1979719 -180435523 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1980045 1980187 -180435055 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1981883 1981912 -180433330 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1982217 1982239 -180433003 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1986142 1986176 -180429066 + (CA)n Simple_repeat Simple_repeat 2 35 0 2014 123 36 0 chr6 1986568 1986870 -180428372 + AluSp SINE Alu 1 313 0 1336 84 0 0 chr6 1986928 1987095 -180428147 + AluSq SINE Alu 129 295 -18 181 263 88 44 chr6 1987389 1987503 -180427739 + MIR SINE MIR 90 208 -54 1979 155 7 7 chr6 1988182 1988492 -180426750 + AluJo SINE Alu 1 310 -2 2550 59 0 7 chr6 1988857 1989163 -180426079 + AluY SINE Alu 2 305 -6 249 309 83 71 chr6 1989746 1989914 -180425328 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1990006 1990052 -180425190 + AT_rich Low_complexity Low_complexity 1 46 0 1447 211 6 35 chr6 1990990 1991303 -180423939 + AluJo SINE Alu 1 304 -8 2067 115 35 0 chr6 1993945 1994232 -180421010 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1994606 1994635 -180420607 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1994814 1994842 -180420400 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1997425 1997495 -180417747 + AT_rich Low_complexity Low_complexity 1 70 0 469 223 218 40 chr6 1997764 1997966 -180417276 - MIR SINE MIR -12 250 13 246 306 137 8 chr6 1998003 1998127 -180417115 - MIR SINE MIR -76 186 47 1177 199 15 0 chr6 1998552 1998753 -180416489 + MER2 DNA MER2_type 1 204 -141 1081 158 19 98 chr6 1998753 1999042 -180416200 - AluJo SINE Alu 0 312 54 2144 123 44 27 chr6 1999044 1999411 -180415831 - THE1C LTR MaLR -2 373 1 2628 113 5 15 chr6 1999411 1999800 -180415442 - THE1C-int LTR MaLR 0 1580 1196 300 203 7 48 chr6 1999800 1999873 -180415369 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1999875 1999903 -180415339 + AT_rich Low_complexity Low_complexity 1 28 0 3655 181 87 28 chr6 2000449 2001511 -180413731 - L1MB7 LINE L1 -3 6181 5044 262 176 0 0 chr6 2001729 2001780 -180413462 - L1MB7 LINE L1 -1118 5028 4978 294 232 14 14 chr6 2001783 2001852 -180413390 - L1MB7 LINE L1 -1250 4896 4828 946 203 16 5 chr6 2002469 2002656 -180412586 + MER5A DNA MER1_type 1 189 0 2064 141 7 0 chr6 2003191 2003482 -180411760 - AluSx SINE Alu -19 293 1 2314 86 26 0 chr6 2004006 2004310 -180410932 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 2005266 2005301 -180409941 + AT_rich Low_complexity Low_complexity 1 35 0 791 256 20 0 chr6 2006247 2006446 -180408796 - MER3 DNA MER1_type -1 208 6 208 337 71 10 chr6 2006753 2006851 -180408391 - L2 LINE L2 -32 3240 3137 737 207 165 0 chr6 2006955 2007143 -180408099 - MER20 DNA MER1_type 0 219 1 188 279 93 31 chr6 2007744 2007873 -180407369 - L2 LINE L2 -798 2516 2380 1506 150 26 51 chr6 2007949 2008262 -180406980 - MLT1B LTR MaLR -85 305 1 190 243 229 0 chr6 2008302 2008372 -180406870 + MIR SINE MIR 16 101 -161 1037 179 16 0 chr6 2008446 2008636 -180406606 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 2008828 2009006 -180406236 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 229 300 100 0 chr6 2009148 2009218 -180406024 - MIR3 SINE MIR -14 194 118 356 349 50 15 chr6 2009617 2009815 -180405427 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 2009912 2009970 -180405272 + CT-rich Low_complexity Low_complexity 1 57 0 344 241 13 0 chr6 2011356 2011435 -180403807 - L1ME3A LINE L1 -4 6166 6087 201 312 128 9 chr6 2011559 2011668 -180403574 + MIR3 SINE MIR 78 199 -9 238 306 97 45 chr6 2012563 2012697 -180402545 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 2015865 2015965 -180399277 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 2018656 2019189 -180396053 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 2019635 2019739 -180395503 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 2020780 2021055 -180394187 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 2021369 2021442 -180393800 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 2022908 2023197 -180392045 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 2023924 2024234 -180391008 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 2024945 2024982 -180390260 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 2024999 2025321 -180389921 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 2026732 2026806 -180388436 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 2027251 2027406 -180387836 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 2029289 2029601 -180385641 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 2029915 2030040 -180385202 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 2033244 2033673 -180381569 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 2033673 2034030 -180381212 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 2034030 2034562 -180380680 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 2034660 2034796 -180380446 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 2035445 2035511 -180379731 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 2035717 2035792 -180379450 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 2036529 2037306 -180377936 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 2038378 2038401 -180376841 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 2038909 2039208 -180376034 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 2039511 2039831 -180375411 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 2042673 2042772 -180372470 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 2043087 2043210 -180372032 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 2043359 2043659 -180371583 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 2043688 2045490 -180369752 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 2045991 2046068 -180369174 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 2046162 2046274 -180368968 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 2046624 2046760 -180368482 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 2047435 2047509 -180367733 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 2047509 2047810 -180367432 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 2047810 2048090 -180367152 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 2048242 2048686 -180366556 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 2048715 2048848 -180366394 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 2049239 2049752 -180365490 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 2049754 2049837 -180365405 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 2049880 2050211 -180365031 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 2050310 2050407 -180364835 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 2050407 2050444 -180364798 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 2051000 2051025 -180364217 + (CATG)n Simple_repeat Simple_repeat 3 27 0 807 214 107 5 chr6 2051650 2051846 -180363396 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 2052020 2052697 -180362545 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 2053451 2053684 -180361558 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 2054207 2054322 -180360920 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 2055049 2055335 -180359907 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 2055346 2055519 -180359723 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 2056453 2056580 -180358662 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 2057121 2057318 -180357924 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 2058858 2059024 -180356218 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 2059314 2059500 -180355742 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 2060070 2060170 -180355072 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 2061707 2061920 -180353322 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 2062387 2062519 -180352723 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 2062876 2063006 -180352236 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 2064639 2064661 -180350581 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 2065015 2065607 -180349635 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 2065603 2066000 -180349242 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 2066015 2066150 -180349092 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 2066592 2066619 -180348623 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 2067020 2067215 -180348027 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 2067642 2067927 -180347315 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 2068071 2068189 -180347053 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 2068636 2068930 -180346312 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 2068930 2068960 -180346282 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 2069913 2070175 -180345067 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 2072099 2072196 -180343046 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 2072124 2072215 -180343027 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 2072883 2073689 -180341553 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 2073689 2073999 -180341243 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 2074006 2074176 -180341066 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 2074176 2074491 -180340751 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 2074744 2074808 -180340434 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 2075181 2075271 -180339971 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 2075512 2076071 -180339171 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 2076365 2076659 -180338583 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 2076766 2076977 -180338265 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 2077682 2077771 -180337471 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 2077790 2078179 -180337063 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 2079654 2079720 -180335522 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 2079804 2080115 -180335127 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 2080144 2080170 -180335072 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 2080680 2080789 -180334453 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 2081590 2081793 -180333449 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 2082991 2083067 -180332175 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 2083087 2083125 -180332117 + AT_rich Low_complexity Low_complexity 1 38 0 808 286 18 21 chr6 2083375 2083655 -180331587 + Charlie4 DNA MER1_type 18 296 -1665 597 222 58 18 chr6 2083656 2083827 -180331415 + Charlie4 DNA MER1_type 1784 1961 0 22 0 0 0 chr6 2084471 2084493 -180330749 + AT_rich Low_complexity Low_complexity 1 22 0 2302 97 0 23 chr6 2085573 2085882 -180329360 + AluSx SINE Alu 1 302 -10 449 174 87 0 chr6 2087178 2087270 -180327972 + L2 LINE L2 3173 3272 0 20624 185 34 15 chr6 2088305 2092848 -180322394 + L1PB4 LINE L1 18 5493 -2119 1755 105 0 4 chr6 2092848 2093077 -180322165 + AluSq SINE Alu 1 228 -85 20624 185 34 15 chr6 2093077 2094653 -180320589 + L1PB4 LINE L1 5493 7037 -575 604 242 47 38 chr6 2094783 2094994 -180320248 + AluJo SINE Alu 81 293 -19 1479 220 24 3 chr6 2094999 2095331 -180319911 + L1PB4 LINE L1 7250 7588 -6 303 318 104 20 chr6 2095350 2095551 -180319691 + L1M4 LINE L1 2115 2332 -3814 345 328 91 70 chr6 2095564 2095906 -180319336 + L1MCa LINE L1 42 390 -6036 360 243 72 27 chr6 2096064 2096175 -180319067 + L2 LINE L2 3197 3312 -1 839 181 40 6 chr6 2096980 2097157 -180318085 + L1PA11 LINE L1 5956 6138 -36 472 311 63 70 chr6 2097396 2097869 -180317373 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 2098460 2098492 -180316750 + AT_rich Low_complexity Low_complexity 1 32 0 252 333 52 7 chr6 2099174 2099309 -180315933 - HAL1 LINE L1 -822 1685 1545 253 336 45 9 chr6 2100277 2100387 -180314855 + L2 LINE L2 3150 3263 -9 293 350 60 0 chr6 2101356 2101456 -180313786 - L2 LINE L2 -9 3263 3158 2414 121 6 6 chr6 2102528 2102892 -180312350 + L1PA11 LINE L1 5803 6166 -8 202 351 69 8 chr6 2103110 2103241 -180312001 + L2 LINE L2 2617 2755 -559 2448 71 0 3 chr6 2104269 2104566 -180310676 - AluY SINE Alu -13 298 3 942 192 75 43 chr6 2104569 2104850 -180310392 - L1MB8 LINE L1 -72 6106 5817 1013 175 0 29 chr6 2104888 2105059 -180310183 - FRAM SINE Alu -10 166 1 2425 182 34 12 chr6 2105059 2105722 -180309520 - L1MB8 LINE L1 -351 5827 5152 1269 227 60 5 chr6 2105760 2106144 -180309098 + L1M4 LINE L1 4611 5015 -1131 345 226 38 9 chr6 2106147 2106253 -180308989 - HAL1b LINE L1 -616 732 624 377 286 259 5 chr6 2106433 2106618 -180308624 - L2 LINE L2 0 3313 3082 313 211 79 72 chr6 2106627 2106779 -180308463 + HAL1b LINE L1 905 1057 -291 294 269 44 55 chr6 2107780 2107962 -180307280 + MLT1J LTR MaLR 253 432 -79 216 240 56 112 chr6 2108164 2108343 -180306899 + L2 LINE L2 2894 3062 -210 2187 130 0 0 chr6 2108579 2108896 -180306346 - AluSx SINE Alu 0 317 1 237 227 175 10 chr6 2109666 2109763 -180305479 + MER103 DNA DNA 37 149 -17 219 69 0 0 chr6 2110803 2110832 -180304410 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 728 247 97 23 chr6 2113205 2113464 -180301778 - L2 LINE L2 -1 3312 3035 689 282 19 34 chr6 2113534 2113740 -180301502 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 2114471 2114514 -180300728 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 2116244 2116374 -180298868 + CT-rich Low_complexity Low_complexity 3 134 0 1083 304 83 15 chr6 2116620 2117091 -180298151 - MLT1J LTR MaLR -8 503 1 2332 93 0 3 chr6 2117418 2117718 -180297524 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 2118575 2118630 -180296612 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 2118630 2118718 -180296524 + HAL1b LINE L1 430 517 -831 1270 216 81 6 chr6 2118718 2119038 -180296204 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 2119038 2119176 -180296066 + HAL1b LINE L1 517 655 -693 2351 87 3 0 chr6 2119232 2119531 -180295711 + AluSg SINE Alu 1 300 -10 229 211 0 0 chr6 2119998 2120055 -180295187 - HAL1b LINE L1 -571 777 721 463 36 99 0 chr6 2120086 2120197 -180295045 + (TA)n Simple_repeat Simple_repeat 2 123 0 6174 148 65 25 chr6 2120689 2121872 -180293370 - Tigger3b DNA MER2_type 0 1231 1 381 247 9 57 chr6 2122395 2122580 -180292662 + MER34 LTR ERV1 1 201 -341 * 701 215 45 33 chr6 2122579 2122821 -180292421 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 2122895 2122962 -180292280 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 488 202 47 0 chr6 2125304 2125433 -180289809 + Charlie5 DNA MER1_type 2489 2623 0 5600 110 16 14 chr6 2125476 2126477 -180288765 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 2126866 2126891 -180288351 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 2127060 2127097 -180288145 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 2127521 2127550 -180287692 + AT_rich Low_complexity Low_complexity 1 29 0 1819 159 7 13 chr6 2127680 2127981 -180287261 + AluJo SINE Alu 1 299 -13 1279 223 84 12 chr6 2128210 2128784 -180286458 + L1M4 LINE L1 2613 3227 -2919 2153 133 0 0 chr6 2128949 2129257 -180285985 - AluSx SINE Alu -4 308 1 1037 183 68 8 chr6 2129259 2129494 -180285748 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 2129620 2129656 -180285586 + AT_rich Low_complexity Low_complexity 1 36 0 3544 192 33 18 chr6 2129970 2130758 -180284484 - L1MB8 LINE L1 -10 6168 5369 2188 238 27 28 chr6 2130738 2131123 -180284119 - L1MB8 LINE L1 -1780 4366 3981 * 1922 113 73 0 chr6 2131123 2131397 -180283845 - AluSx SINE Alu -18 294 1 2188 238 27 28 chr6 2131397 2131721 -180283521 - L1MB8 LINE L1 -2165 3981 3658 187 51 0 51 chr6 2131953 2131992 -180283250 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 2133213 2133241 -180282001 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2135400 2135638 -180279604 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2135762 2135971 -180279271 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2137007 2137057 -180278185 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2137135 2137170 -180278072 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2138565 2138589 -180276653 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2139783 2139810 -180275432 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2140639 2140666 -180274576 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2141808 2141878 -180273364 - MER102a DNA MER1_type -3 327 246 332 193 263 18 chr6 2141882 2141996 -180273246 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2142107 2142580 -180272662 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2143340 2143481 -180271761 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2144523 2144679 -180270563 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2144786 2144893 -180270349 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2144960 2145090 -180270152 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2145100 2145196 -180270046 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2146829 2147141 -180268101 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2147185 2147487 -180267755 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2148571 2148624 -180266618 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2148627 2148674 -180266568 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2150030 2150135 -180265107 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2150334 2150411 -180264831 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2150905 2151088 -180264154 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2151088 2151398 -180263844 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2151398 2152153 -180263089 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2152137 2152673 -180262569 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2152673 2152984 -180262258 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2152984 2153308 -180261934 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2153323 2153525 -180261717 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2153520 2154967 -180260275 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2154967 2155007 -180260235 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2155007 2156678 -180258564 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2156679 2156996 -180258246 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2156996 2157313 -180257929 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2157371 2157516 -180257726 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2157617 2157888 -180257354 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2158631 2158936 -180256306 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2158956 2159000 -180256242 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2159522 2160022 -180255220 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2160026 2160351 -180254891 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2160356 2160552 -180254690 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2160616 2160873 -180254369 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2160874 2162019 -180253223 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2162019 2162270 -180252972 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2162281 2162492 -180252750 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2162530 2162847 -180252395 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2162923 2162984 -180252258 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2162984 2163291 -180251951 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2163291 2163513 -180251729 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2163514 2163666 -180251576 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2163723 2163865 -180251377 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2163933 2164148 -180251094 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2165424 2165945 -180249297 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2165946 2165976 -180249266 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2165980 2166572 -180248670 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2166885 2167054 -180248188 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2167165 2167264 -180247978 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2167332 2167518 -180247724 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2167710 2167885 -180247357 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2168043 2168068 -180247174 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2168373 2168499 -180246743 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2168915 2169107 -180246135 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2169224 2169502 -180245740 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2169635 2169736 -180245506 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2170048 2170353 -180244889 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2170574 2170875 -180244367 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2171594 2171895 -180243347 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2171895 2172184 -180243058 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2172184 2172374 -180242868 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2172582 2172891 -180242351 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2173925 2174100 -180241142 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2174226 2174325 -180240917 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2175960 2176102 -180239140 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2176115 2181579 -180233663 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2181580 2181640 -180233602 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2182965 2183077 -180232165 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2183206 2183277 -180231965 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2184516 2185816 -180229426 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2185816 2185951 -180229291 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2185951 2186403 -180228839 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2186423 2191936 -180223306 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2192032 2192112 -180223130 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2193311 2193354 -180221888 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2193771 2193963 -180221279 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2195085 2195116 -180220126 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2195654 2195954 -180219288 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2196687 2196974 -180218268 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2197033 2197120 -180218122 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2199484 2199571 -180215671 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2200123 2200215 -180215027 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2200627 2200726 -180214516 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2200727 2200989 -180214253 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2202586 2202787 -180212455 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2202791 2203062 -180212180 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2205141 2205640 -180209602 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2205679 2206052 -180209190 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2206244 2206558 -180208684 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2206555 2206784 -180208458 + HsTC2 DNA Tc2 1659 1895 -3 273 348 11 11 chr6 2206856 2206948 -180208294 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2207152 2207297 -180207945 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2209198 2209216 -180206026 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2209216 2209505 -180205737 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2209505 2209527 -180205715 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2211109 2211245 -180203997 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2212454 2212493 -180202749 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2214924 2214945 -180200297 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2216050 2216356 -180198886 + AluY SINE Alu 3 308 -3 2279 111 0 0 chr6 2217728 2218034 -180197208 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2219513 2219543 -180195699 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2219610 2219635 -180195607 + AT_rich Low_complexity Low_complexity 1 25 0 348 314 109 6 chr6 2220448 2220604 -180194638 - L2 LINE L2 -229 3084 2913 238 342 9 45 chr6 2220641 2220752 -180194490 - MIR SINE MIR -129 133 27 484 268 31 0 chr6 2223579 2223706 -180191536 + MER5A DNA MER1_type 1 131 -58 204 255 0 0 chr6 2224944 2224991 -180190251 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2226096 2226127 -180189115 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 279 302 43 43 chr6 2227880 2228019 -180187223 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2228212 2228237 -180187005 + AT_rich Low_complexity Low_complexity 1 25 0 425 268 167 26 chr6 2231260 2231457 -180183785 - MIR SINE MIR -3 259 32 672 256 21 10 chr6 2232118 2232327 -180182915 - MIR SINE MIR -41 221 12 316 274 260 7 chr6 2233372 2233518 -180181724 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2236145 2236207 -180179035 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2236303 2236412 -180178830 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2236423 2236452 -180178790 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2236457 2236575 -180178667 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2236587 2236762 -180178480 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2237166 2237188 -180178054 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2237777 2238077 -180177165 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2239318 2239612 -180175630 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2239667 2239747 -180175495 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2241056 2241216 -180174026 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2242595 2242670 -180172572 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2242672 2242744 -180172498 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2242740 2242809 -180172433 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2243117 2243326 -180171916 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2246023 2246235 -180169007 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2246312 2246345 -180168897 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2246743 2246776 -180168466 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2246833 2247035 -180168207 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2247035 2247345 -180167897 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2247345 2247582 -180167660 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2247582 2247884 -180167358 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2247897 2248080 -180167162 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2248080 2248481 -180166761 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2248481 2248781 -180166461 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2248781 2249650 -180165592 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2249650 2249765 -180165477 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2249753 2249874 -180165368 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2249878 2250211 -180165031 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2250211 2250357 -180164885 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2250357 2250666 -180164576 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2250675 2250897 -180164345 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2251181 2251639 -180163603 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2253013 2253048 -180162194 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2253395 2253866 -180161376 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2254187 2254246 -180160996 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2255049 2255071 -180160171 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2255213 2255372 -180159870 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2255467 2255910 -180159332 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2256400 2256717 -180158525 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2256753 2256915 -180158327 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2256915 2257015 -180158227 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2257015 2257129 -180158113 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2257144 2257386 -180157856 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2257666 2257724 -180157518 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2259555 2259867 -180155375 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2260139 2260231 -180155011 - MIR3 SINE MIR -8 200 103 638 191 30 30 chr6 2261415 2261546 -180153696 + FLAM_C SINE Alu 1 131 -2 407 283 25 57 chr6 2261632 2261791 -180153451 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2262196 2262213 -180153029 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2262213 2262467 -180152775 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2262467 2262502 -180152740 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2262611 2262664 -180152578 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2263527 2263848 -180151394 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2264076 2264236 -180151006 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2264252 2264878 -180150364 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2264895 2264974 -180150268 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2265301 2265330 -180149912 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2266011 2266042 -180149200 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2268293 2268444 -180146798 - MER5A DNA MER1_type 0 189 9 471 180 18 81 chr6 2270343 2270454 -180144788 - Tigger2 DNA MER2_type -1 2717 2614 507 154 0 0 chr6 2270454 2270532 -180144710 - AluJ/FLAM SINE Alu -234 78 1 1259 81 113 57 chr6 2270532 2270654 -180144588 - Tigger2 DNA MER2_type -2456 262 148 2329 113 7 0 chr6 2270654 2270964 -180144278 - AluSx SINE Alu 0 312 1 1259 81 113 57 chr6 2270964 2271089 -180144153 - Tigger2 DNA MER2_type -2570 148 1 227 293 47 28 chr6 2271452 2271558 -180143684 - MIR SINE MIR -33 229 122 1423 151 98 19 chr6 2271712 2271977 -180143265 - AluJb SINE Alu -26 286 1 2238 97 7 0 chr6 2272166 2272456 -180142786 - AluY SINE Alu -19 292 1 188 265 191 0 chr6 2273348 2273416 -180141826 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2273807 2273858 -180141384 + (CA)n Simple_repeat Simple_repeat 2 52 0 784 233 150 53 chr6 2274514 2274555 -180140687 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2274555 2274585 -180140657 + (TG)n Simple_repeat Simple_repeat 1 30 0 784 233 150 53 chr6 2274585 2274882 -180140360 - MLT2B1 LTR ERVL -36 484 149 3846 201 55 7 chr6 2274911 2276336 -180138906 - ERVL-B1 LTR ERVL -4219 1545 2 1122 215 195 31 chr6 2276337 2276784 -180138458 - MLT2B1 LTR ERVL 0 520 1 452 320 47 65 chr6 2277019 2277360 -180137882 + L1MEd LINE L1 923 1257 -4862 243 230 144 58 chr6 2277521 2277660 -180137582 - MIR SINE MIR -26 236 86 244 293 29 71 chr6 2277703 2277843 -180137399 - MIR SINE MIR -69 193 60 194 304 54 22 chr6 2277879 2277971 -180137271 + MIR3 SINE MIR 95 189 -19 272 313 0 10 chr6 2278249 2278345 -180136897 + L2 LINE L2 1890 1984 -1330 193 287 111 80 chr6 2278370 2278784 -180136458 + L2 LINE L2 2430 2856 -458 205 346 0 39 chr6 2279015 2279093 -180136149 + L2 LINE L2 3238 3312 -1 1937 115 0 48 chr6 2280482 2280794 -180134448 + AluSx SINE Alu 11 307 -5 2376 96 3 0 chr6 2281069 2281381 -180133861 + AluSp SINE Alu 1 313 0 1919 180 0 3 chr6 2281491 2281796 -180133446 + AluJo SINE Alu 1 304 -8 2460 71 0 0 chr6 2281861 2282158 -180133084 + AluY SINE Alu 1 297 -14 434 186 72 0 chr6 2282471 2282568 -180132674 - MLT1A2 LTR MaLR -2 372 269 2298 79 0 7 chr6 2283558 2283850 -180131392 + AluSg1 SINE Alu 1 290 -19 351 264 138 75 chr6 2284041 2284389 -180130853 + L1MEd LINE L1 2659 3028 -3101 225 283 120 0 chr6 2285059 2285151 -180130091 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2285259 2285331 -180129911 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2285692 2285726 -180129516 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2285731 2286016 -180129226 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2286933 2287059 -180128183 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2287059 2287106 -180128136 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2287348 2287370 -180127872 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2287410 2287442 -180127800 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2288502 2288938 -180126304 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2288939 2289331 -180125911 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2289331 2289763 -180125479 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2289763 2289890 -180125352 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2290498 2290866 -180124376 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2291779 2291809 -180123433 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2291900 2291997 -180123245 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2292033 2292343 -180122899 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2292419 2292587 -180122655 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2292587 2293868 -180121374 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2293868 2294153 -180121089 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2294153 2295278 -180119964 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2295278 2295728 -180119514 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2295761 2295955 -180119287 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2296106 2296199 -180119043 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2297033 2297108 -180118134 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2297128 2297172 -180118070 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2298680 2298878 -180116364 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2300588 2300716 -180114526 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2301528 2301694 -180113548 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2302523 2304107 -180111135 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2304178 2304809 -180110433 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2304868 2305168 -180110074 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2306847 2306983 -180108259 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2306984 2307014 -180108228 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2309069 2309230 -180106012 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2310499 2310765 -180104477 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2310902 2311033 -180104209 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2311212 2311531 -180103711 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2312552 2312654 -180102588 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2315549 2315663 -180099579 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2315665 2315866 -180099376 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2316182 2316425 -180098817 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2316512 2316780 -180098462 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2317124 2317419 -180097823 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2317784 2317951 -180097291 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2318247 2318642 -180096600 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2318782 2318832 -180096410 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2319488 2319632 -180095610 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2320696 2320752 -180094490 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2320754 2320775 -180094467 + (TC)n Simple_repeat Simple_repeat 2 22 0 498 273 205 10 chr6 2321326 2321531 -180093711 + MIR SINE MIR 18 262 0 302 274 24 0 chr6 2321649 2321733 -180093509 + MLT1L LTR MaLR 191 276 -339 2184 135 148 13 chr6 2321943 2322320 -180092922 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2323855 2323877 -180091365 + (A)n Simple_repeat Simple_repeat 1 22 0 423 270 56 92 chr6 2324437 2324633 -180090609 + MIR SINE MIR 28 216 -46 1940 197 70 95 chr6 2325077 2325458 -180089784 + L1MC5 LINE L1 6738 7127 -834 2067 159 18 9 chr6 2325458 2325798 -180089444 - MER2 DNA MER2_type 0 344 2 1940 197 70 95 chr6 2325798 2325829 -180089413 + L1MC5 LINE L1 7127 7157 -804 820 204 0 0 chr6 2325829 2325961 -180089281 - FLAM_C SINE Alu 0 133 2 1940 197 70 95 chr6 2325961 2326384 -180088858 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2326386 2326413 -180088829 + GA-rich Low_complexity Low_complexity 2 27 -82 2048 136 96 6 chr6 2326413 2326745 -180088497 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2326745 2326824 -180088418 + GA-rich Low_complexity Low_complexity 27 109 0 918 247 68 45 chr6 2326824 2327265 -180087977 + L1MC5 LINE L1 7475 7925 -36 525 214 0 0 chr6 2327730 2327819 -180087423 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2328495 2328559 -180086683 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2329797 2329823 -180085419 + AT_rich Low_complexity Low_complexity 1 26 0 275 296 68 0 chr6 2329923 2330011 -180085231 - MIR SINE MIR -85 177 84 939 179 6 0 chr6 2330099 2330261 -180084981 + FRAM SINE Alu 1 163 -13 638 206 269 36 chr6 2330601 2330854 -180084388 - MER5C DNA MER1_type 0 324 13 271 109 0 43 chr6 2330966 2330978 -180084264 - MER46A DNA MER2_type -82 154 145 566 181 93 7 chr6 2330978 2331117 -180084125 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5262 139 17 15 chr6 2331111 2331979 -180083263 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1269 212 42 72 chr6 2332045 2332352 -180082890 + AluJo SINE Alu 4 301 -1 2407 59 0 26 chr6 2332532 2332835 -180082407 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2333935 2334247 -180080995 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2334247 2334278 -180080964 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2334278 2334297 -180080945 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2334297 2334326 -180080916 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2334326 2334377 -180080865 + MLT2D LTR ERVL 319 411 -3 684 318 180 23 chr6 2334527 2335354 -180079888 - L2 LINE L2 -559 2755 1799 556 214 225 11 chr6 2335962 2336144 -180079098 - MIR SINE MIR 0 262 42 1801 158 0 34 chr6 2336185 2336477 -180078765 + AluJb SINE Alu 1 311 0 199 103 0 0 chr6 2336477 2336506 -180078736 + (TAAA)n Simple_repeat Simple_repeat 3 172 0 216 135 0 0 chr6 2337153 2337190 -180078052 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2338189 2338308 -180076934 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2338331 2338369 -180076873 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2340437 2340732 -180074510 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2342423 2342721 -180072521 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2343735 2343880 -180071362 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2344089 2344259 -180070983 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2344532 2344685 -180070557 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2344685 2344990 -180070252 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2344990 2345035 -180070207 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2345133 2345227 -180070015 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2345512 2345779 -180069463 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2346012 2346297 -180068945 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2346671 2346982 -180068260 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2347052 2347563 -180067679 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2348667 2348969 -180066273 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2349253 2349499 -180065743 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2349901 2350000 -180065242 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2350192 2350493 -180064749 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2350835 2351144 -180064098 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2351621 2351777 -180063465 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2351831 2351891 -180063351 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2352016 2352344 -180062898 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2352366 2352598 -180062644 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2352598 2353010 -180062232 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2353808 2354011 -180061231 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2354991 2355313 -180059929 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2355350 2355536 -180059706 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2356434 2356458 -180058784 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2358097 2358398 -180056844 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2358671 2359002 -180056240 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2359233 2359437 -180055805 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2360091 2360930 -180054312 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2360939 2361076 -180054166 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2361417 2361620 -180053622 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2361627 2361895 -180053347 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2361902 2362041 -180053201 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2362041 2362233 -180053009 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2362233 2362509 -180052733 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2362509 2362636 -180052606 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2362636 2362923 -180052319 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2362923 2363173 -180052069 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2362923 2363141 -180052101 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2363196 2363273 -180051969 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2363411 2363438 -180051804 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2363679 2363980 -180051262 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2364291 2364462 -180050780 - AluSx SINE Alu -4 308 138 572 114 0 0 chr6 2364462 2364541 -180050701 - AluSx SINE Alu -229 84 6 213 132 0 0 chr6 2364556 2364594 -180050648 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2365825 2365952 -180049290 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2366066 2366554 -180048688 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2366615 2367126 -180048116 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2367141 2367649 -180047593 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2367868 2368180 -180047062 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2368339 2368556 -180046686 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2368820 2368845 -180046397 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2368866 2369215 -180046027 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2369215 2369261 -180045981 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2369428 2369882 -180045360 - MLT1C LTR MaLR 0 467 1 452 268 82 41 chr6 2370098 2370318 -180044924 - MIR SINE MIR -14 248 20 647 290 71 17 chr6 2370407 2370793 -180044449 - L1MC/D LINE L1 -743 5403 5188 1156 161 75 54 chr6 2370868 2371034 -180044208 - AluJo SINE Alu -15 297 121 207 0 0 0 chr6 2371034 2371057 -180044185 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1156 161 75 54 chr6 2371057 2371170 -180044072 - AluJo SINE Alu -191 121 12 2278 118 0 7 chr6 2371463 2371767 -180043475 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2372246 2372278 -180042964 + AT_rich Low_complexity Low_complexity 1 32 0 6337 195 30 23 chr6 2372281 2373629 -180041613 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2373629 2373657 -180041585 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6337 195 30 23 chr6 2373657 2374882 -180040360 - L1MC1 LINE L1 -1376 4957 3742 678 222 15 0 chr6 2375078 2375213 -180040029 - MLT1G1 LTR MaLR 0 595 459 390 265 185 31 chr6 2375222 2375463 -180039779 - MLT1G1 LTR MaLR -196 346 98 * 973 195 5 30 chr6 2375445 2375645 -180039597 + MLT1B LTR MaLR 196 390 0 1232 174 121 19 chr6 2376493 2376757 -180038485 - MER21B LTR ERV1 -554 309 19 380 279 0 0 chr6 2376780 2376859 -180038383 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2377762 2377784 -180037458 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2377957 2377980 -180037262 + (A)n Simple_repeat Simple_repeat 1 23 0 263 169 17 51 chr6 2378501 2378560 -180036682 - L2 LINE L2 0 3313 3257 1606 138 177 16 chr6 2379313 2379624 -180035618 + MSTA LTR MaLR 68 428 0 22 0 0 0 chr6 2381570 2381592 -180033650 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2381766 2381787 -180033455 + (A)n Simple_repeat Simple_repeat 1 21 0 263 169 17 51 chr6 2382308 2382367 -180032875 - L2 LINE L2 0 3313 3257 604 92 0 0 chr6 2382574 2382650 -180032592 + AluSq/x SINE Alu 36 111 -201 1442 267 246 5 chr6 2382699 2383186 -180032056 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2383186 2383224 -180032018 + (TG)n Simple_repeat Simple_repeat 2 39 0 1442 267 246 5 chr6 2383224 2383628 -180031614 - L2 LINE L2 -2305 1009 271 301 221 240 10 chr6 2383632 2383736 -180031506 - MER5A DNA MER1_type -1 188 61 353 125 47 0 chr6 2383783 2383847 -180031395 - MER5A DNA MER1_type -118 71 5 631 238 63 0 chr6 2383850 2383993 -180031249 + MER33 DNA MER1_type 8 159 -165 1489 158 12 12 chr6 2383998 2384244 -180030998 + AluJo SINE Alu 5 250 -62 1536 192 38 23 chr6 2384264 2384608 -180030634 - MLT1A1 LTR MaLR -11 354 6 1927 156 0 14 chr6 2384627 2384915 -180030327 - AluJo SINE Alu -28 284 1 414 189 76 0 chr6 2384916 2385048 -180030194 + MER33 DNA MER1_type 204 345 -18 200 313 142 24 chr6 2385089 2385300 -180029942 - L2 LINE L2 -3037 277 42 747 229 16 0 chr6 2385301 2385484 -180029758 - MER114 LTR ERV -447 201 16 5048 135 19 37 chr6 2385579 2386466 -180028776 - MER4D LTR ERV1 0 872 2 569 279 31 12 chr6 2386891 2387052 -180028190 + MER41C LTR ERV1 1 164 -390 381 216 14 0 chr6 2387043 2387117 -180028125 + MER41D LTR ERV1 483 557 0 * 1220 168 0 0 chr6 2388673 2388846 -180026396 + FAM SINE Alu 1 173 -2 833 201 0 12 chr6 2390211 2390375 -180024867 + MER5B DNA MER1_type 17 178 0 632 243 18 41 chr6 2391134 2391362 -180023880 + L1ME2 LINE L1 5941 6166 0 321 285 59 32 chr6 2391391 2391577 -180023665 + L1MC4 LINE L1 7841 8031 -11 398 280 49 7 chr6 2391754 2391897 -180023345 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2391973 2391995 -180023247 + (T)n Simple_repeat Simple_repeat 1 22 0 301 143 0 20 chr6 2391995 2392044 -180023198 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2392183 2392204 -180023038 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2392239 2392273 -180022969 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2119 75 0 0 chr6 2392275 2392529 -180022713 - AluY SINE Alu -31 280 27 * 2377 101 0 0 chr6 2392527 2392833 -180022409 - AluSx SINE Alu -6 306 1 2133 117 7 0 chr6 2392961 2393251 -180021991 - AluSx SINE Alu -20 292 1 8649 165 14 23 chr6 2393253 2393685 -180021557 - L1MA9 LINE L1 -61 6251 5817 2440 68 0 0 chr6 2393685 2393980 -180021262 - AluY SINE Alu 0 311 17 8649 165 14 23 chr6 2393980 2396092 -180019150 - L1MA9 LINE L1 -495 5817 3728 831 364 35 33 chr6 2397480 2398022 -180017220 - L2 LINE L2 -30 3242 2695 1808 140 0 53 chr6 2398028 2398176 -180017066 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2398176 2398481 -180016761 + AluSp SINE Alu 1 308 -5 1808 140 0 53 chr6 2398481 2398653 -180016589 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2398727 2398750 -180016492 + AT_rich Low_complexity Low_complexity 1 23 0 950 272 100 69 chr6 2399391 2399830 -180015412 + L1MEc LINE L1 786 1210 -5186 2405 128 10 49 chr6 2399830 2400220 -180015022 - THE1C LTR MaLR 0 375 1 950 272 100 69 chr6 2400220 2400510 -180014732 + L1MEc LINE L1 1210 1490 -4906 754 197 31 0 chr6 2400510 2400637 -180014605 + FLAM_A SINE Alu 1 131 -2 950 272 100 69 chr6 2400637 2400906 -180014336 + L1MEc LINE L1 1490 1816 -4580 1141 274 133 9 chr6 2400962 2401611 -180013631 + L1MEc LINE L1 3198 3926 -2289 32620 107 14 59 chr6 2401617 2408063 -180007179 + L1PA7 LINE L1 12 6153 -1 6085 143 35 14 chr6 2408185 2409548 -180005694 + L1PB3 LINE L1 4186 5518 -705 1977 146 9 25 chr6 2409548 2409863 -180005379 - AluJo SINE Alu -2 310 1 6085 143 35 14 chr6 2409863 2409956 -180005286 + L1PB3 LINE L1 5518 5607 -616 1600 149 16 68 chr6 2409956 2410277 -180004965 + AluJb SINE Alu 3 306 -6 6085 143 35 14 chr6 2410277 2410820 -180004422 + L1PB3 LINE L1 5607 6223 0 2020 243 141 17 chr6 2410854 2411743 -180003499 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2412351 2412374 -180002868 + (T)n Simple_repeat Simple_repeat 1 23 0 1995 148 44 3 chr6 2412691 2413030 -180002212 - LTR35 LTR ERV1 0 618 266 1136 99 12 17 chr6 2413030 2413202 -180002040 + THE1C-int LTR MaLR 1410 1580 0 2231 104 6 47 chr6 2413202 2413567 -180001675 + THE1C LTR MaLR 1 350 -25 227 100 0 0 chr6 2413572 2413602 -180001640 + MER48 LTR ERV1 358 387 0 2227 191 90 44 chr6 2413623 2414140 -180001102 + MER31-int LTR ERV1 3266 3811 -1125 2421 148 13 82 chr6 2414140 2414593 -180000649 - MER61B LTR ERV1 -3 422 1 2227 191 90 44 chr6 2414593 2414620 -180000622 + MER31-int LTR ERV1 3811 3835 -1101 1269 150 0 162 chr6 2414620 2414979 -180000263 + AluSx SINE Alu 6 306 -6 939 164 26 9 chr6 2414987 2415163 -180000079 + MER31-int LTR ERV1 3861 4010 -926 19579 62 3 22 chr6 2415203 2418389 -179996853 + L1PA6 LINE L1 2974 6154 0 24424 74 3 5 chr6 2418394 2421458 -179993784 + HERVL-A1 LTR ERVL 1564 4620 -1034 31742 61 35 26 chr6 2421559 2426088 -179989154 - Harlequin LTR ERV1 -1684 5212 575 476 35 0 0 chr6 2426188 2426246 -179988996 + HERVL-A1 LTR ERVL 5597 5654 0 3335 68 57 9 chr6 2426246 2426629 -179988613 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2426629 2426656 -179988586 + (TA)n Simple_repeat Simple_repeat 2 28 0 3335 68 57 9 chr6 2426656 2426696 -179988546 + MLT2A1 LTR ERVL 407 444 0 838 221 111 23 chr6 2428540 2428556 -179986686 + MLT1J LTR MaLR 217 230 -281 2418 102 0 3 chr6 2428556 2428870 -179986372 - AluSq SINE Alu 0 313 1 838 221 111 23 chr6 2428870 2429070 -179986172 + MLT1J LTR MaLR 230 452 -59 557 184 75 48 chr6 2429161 2429297 -179985945 + MLT1A1 LTR MaLR 1 140 -225 1479 148 4 13 chr6 2429297 2429534 -179985708 - MER21B LTR ERV1 0 863 629 2010 166 73 34 chr6 2429534 2429974 -179985268 - LTR2B LTR ERV1 0 490 34 45379 64 20 15 chr6 2429988 2436774 -179978468 - Harlequin LTR ERV1 0 6896 1 2006 184 84 32 chr6 2436774 2437236 -179978006 - LTR2B LTR ERV1 0 490 5 * 3525 171 57 11 chr6 2437225 2437259 -179977983 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2437259 2437282 -179977960 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3525 171 57 11 chr6 2437282 2437857 -179977385 - MER21B LTR ERV1 -256 607 1 2241 167 30 16 chr6 2437939 2438378 -179976864 - MER21B-int LTR ERV1 -52 4139 3699 2113 184 100 107 chr6 2438382 2439219 -179976023 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2439231 2439373 -179975869 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2439373 2439954 -179975288 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2440396 2442119 -179973123 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2442119 2442430 -179972812 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2442430 2443061 -179972181 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2443061 2443443 -179971799 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2443443 2445049 -179970193 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2445049 2445431 -179969811 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2445431 2445795 -179969447 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2445816 2446064 -179969178 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2446064 2446131 -179969111 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2446131 2446429 -179968813 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2446429 2446543 -179968699 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2446713 2447356 -179967886 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2447384 2447445 -179967797 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2447445 2447749 -179967493 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2447757 2447959 -179967283 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2447959 2447991 -179967251 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2447991 2448123 -179967119 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2448402 2448489 -179966753 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2449000 2449060 -179966182 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2449368 2449577 -179965665 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2449612 2449794 -179965448 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2449806 2450122 -179965120 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2450126 2450296 -179964946 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2450389 2450596 -179964646 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2451349 2451792 -179963450 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2451842 2451905 -179963337 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2452397 2452692 -179962550 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2452859 2452946 -179962296 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2453051 2453156 -179962086 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2453156 2453521 -179961721 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2453521 2453707 -179961535 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2453962 2454523 -179960719 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2454572 2454919 -179960323 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2454919 2455044 -179960198 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2455050 2455239 -179960003 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2455355 2455429 -179959813 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2455477 2455804 -179959438 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2455816 2455991 -179959251 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2456016 2456199 -179959043 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2456362 2456487 -179958755 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2456490 2457085 -179958157 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2457086 2457209 -179958033 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2457209 2457796 -179957446 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2457797 2458183 -179957059 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2458218 2458943 -179956299 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2458943 2459215 -179956027 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2459215 2460486 -179954756 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2461641 2462030 -179953212 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2462035 2462130 -179953112 - AluSg/x SINE Alu -102 210 115 3819 126 23 16 chr6 2462253 2462332 -179952910 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2462332 2462628 -179952614 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2462628 2463081 -179952161 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2463081 2463129 -179952113 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2463129 2463279 -179951963 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2463275 2463297 -179951945 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2463297 2463378 -179951864 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2463378 2463435 -179951807 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2463538 2463617 -179951625 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2463614 2463684 -179951558 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2464245 2464363 -179950879 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2464543 2464859 -179950383 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2464871 2464964 -179950278 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2465340 2465474 -179949768 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2466049 2466091 -179949151 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2466091 2466376 -179948866 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2466376 2466715 -179948527 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2467007 2467109 -179948133 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2467115 2467186 -179948056 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2467177 2467551 -179947691 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2467551 2467654 -179947588 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2467680 2468081 -179947161 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2468146 2468915 -179946327 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2469206 2469462 -179945780 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2469462 2469774 -179945468 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2469774 2469916 -179945326 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2469916 2470232 -179945010 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2470232 2470646 -179944596 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2471639 2471757 -179943485 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2472154 2472186 -179943056 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2472198 2472347 -179942895 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2472800 2472991 -179942251 + MER58 DNA MER1_type 5 2417 -3 785 122 0 0 chr6 2474986 2475101 -179940141 - FLAM_C SINE Alu -17 116 2 2624 43 0 0 chr6 2475111 2475412 -179939830 - AluY SINE Alu -10 301 1 239 272 101 32 chr6 2475831 2475989 -179939253 + L2 LINE L2 2537 2705 -609 3997 162 34 28 chr6 2475991 2476036 -179939206 - L1MB4 LINE L1 -6 6174 6131 2401 92 0 3 chr6 2476036 2476342 -179938900 - AluSx SINE Alu -7 305 1 3997 162 34 28 chr6 2476342 2477190 -179938052 - L1MB4 LINE L1 -49 6131 5276 262 186 0 0 chr6 2477443 2477486 -179937756 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2527983 2528035 -179887207 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2528035 2528435 -179886807 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2528435 2529113 -179886129 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2529142 2529182 -179886060 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2529414 2529633 -179885609 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2529882 2530217 -179885025 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2530348 2530484 -179884758 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2531303 2531450 -179883792 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2532483 2532625 -179882617 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2532664 2532794 -179882448 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2532836 2533009 -179882233 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2533947 2534229 -179881013 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2534529 2534630 -179880612 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2534630 2534746 -179880496 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2535749 2535772 -179879470 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2536011 2536036 -179879206 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2536148 2536261 -179878981 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2536732 2536858 -179878384 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2537403 2537698 -179877544 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2538044 2538355 -179876887 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2540181 2540359 -179874883 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2540603 2540673 -179874569 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2540674 2540763 -179874479 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2543244 2543254 -179871988 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2543254 2543719 -179871523 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2543719 2543811 -179871431 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2543813 2544140 -179871102 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2545370 2545689 -179869553 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2545869 2546040 -179869202 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2546054 2546089 -179869153 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2546118 2546218 -179869024 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2546422 2546598 -179868644 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2546600 2546754 -179868488 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2547399 2547528 -179867714 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2547625 2547736 -179867506 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2548224 2548350 -179866892 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2549243 2549556 -179865686 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2549685 2549844 -179865398 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2549893 2550069 -179865173 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2551873 2552040 -179863202 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2553142 2553273 -179861969 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2554373 2554514 -179860728 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2555277 2555377 -179859865 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2555397 2555529 -179859713 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2555557 2555799 -179859443 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2556000 2556761 -179858481 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2556761 2557164 -179858078 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2557164 2558755 -179856487 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2558791 2559091 -179856151 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2559302 2559333 -179855909 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2559660 2559803 -179855439 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2560518 2560569 -179854673 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2560570 2560738 -179854504 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2560776 2561388 -179853854 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2561388 2561681 -179853561 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2561681 2561758 -179853484 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2561801 2562098 -179853144 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2562098 2562445 -179852797 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2562445 2562571 -179852671 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2562642 2563343 -179851899 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2563343 2563634 -179851608 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2563634 2563681 -179851561 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2563696 2563756 -179851486 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2563851 2564054 -179851188 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2564226 2564282 -179850960 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2564282 2564627 -179850615 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2564627 2564903 -179850339 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2565914 2566199 -179849043 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2566201 2566333 -179848909 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2566338 2566692 -179848550 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2567228 2567402 -179847840 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2567757 2568049 -179847193 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2568678 2568701 -179846541 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2569457 2569499 -179845743 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2569625 2569713 -179845529 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2570077 2570372 -179844870 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2572200 2572455 -179842787 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2572517 2572917 -179842325 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2572928 2573104 -179842138 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2573106 2573190 -179842052 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2573200 2573449 -179841793 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2573552 2573788 -179841454 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2573893 2574172 -179841070 - Charlie1 DNA MER1_type 0 2761 2489 44262 29 21 1 chr6 2574172 2580201 -179835041 - L1HS LINE L1 -3 6152 1 1443 203 34 6 chr6 2580204 2580554 -179834688 - Charlie1 DNA MER1_type -257 2504 2145 4812 171 21 19 chr6 2580564 2580607 -179834635 - L1MB3 LINE L1 -2 6181 6140 2271 94 17 3 chr6 2580607 2580904 -179834338 + AluSx SINE Alu 2 302 -10 4812 171 21 19 chr6 2580904 2581247 -179833995 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2581247 2581286 -179833956 + (TG)n Simple_repeat Simple_repeat 2 40 0 4812 171 21 19 chr6 2581286 2582050 -179833192 - L1MB3 LINE L1 -384 5799 5027 1008 207 34 23 chr6 2582055 2582407 -179832835 - MLT1E LTR MaLR -124 453 9 221 153 143 102 chr6 2582414 2582512 -179832730 - L2 LINE L2 -597 2717 2616 235 274 32 0 chr6 2582545 2582607 -179832635 - L2 LINE L2 -9 3304 3241 2115 135 3 22 chr6 2582645 2583009 -179832233 - L1MA5 LINE L1 -6 6294 5938 925 157 7 0 chr6 2583011 2583164 -179832078 + L1MA5 LINE L1 5787 5940 -360 186 271 78 47 chr6 2584407 2584536 -179830706 - MER5A DNA MER1_type -2 187 55 * 202 310 70 10 chr6 2584437 2584537 -179830705 + MER5A DNA MER1_type 41 146 -43 2043 276 109 13 chr6 2584582 2585648 -179829594 - L2 LINE L2 -24 3289 1917 744 277 100 0 chr6 2585653 2585953 -179829289 - L2 LINE L2 -1622 1692 1363 495 330 75 4 chr6 2585960 2586199 -179829043 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2588016 2588042 -179827200 + (TA)n Simple_repeat Simple_repeat 2 27 0 1218 266 110 2 chr6 2588339 2588783 -179826459 + L1ME3 LINE L1 5659 6150 -12 361 266 243 54 chr6 2589926 2590404 -179824838 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2590994 2591114 -179824128 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2594441 2594635 -179820607 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2594940 2595045 -179820197 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2595433 2595899 -179819343 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2596469 2596918 -179818324 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2596919 2597060 -179818182 + MER63 DNA MER1_type 910 1061 0 560 173 105 65 chr6 2599060 2599278 -179815964 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2599433 2599732 -179815510 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2600951 2600991 -179814251 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2601019 2601313 -179813929 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2601336 2601421 -179813821 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2601799 2602232 -179813010 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2602352 2602425 -179812817 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2602439 2602460 -179812782 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2602471 2602753 -179812489 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2602833 2603609 -179811633 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2604322 2604510 -179810732 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2605952 2606025 -179809217 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2608044 2608470 -179806772 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2609022 2609096 -179806146 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2609131 2609424 -179805818 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2609426 2610398 -179804844 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2611191 2611603 -179803639 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2612305 2612331 -179802911 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2613078 2613425 -179801817 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2613427 2613591 -179801651 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2613591 2613899 -179801343 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2613899 2614192 -179801050 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2614419 2614445 -179800797 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2614604 2614626 -179800616 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2615012 2615055 -179800187 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2616226 2616362 -179798880 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2617949 2618210 -179797032 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2618212 2618234 -179797008 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2619392 2619797 -179795445 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2620097 2620391 -179794851 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2620739 2620851 -179794391 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2621574 2621858 -179793384 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2622140 2622429 -179792813 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2622535 2622805 -179792437 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2622997 2623536 -179791706 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2624634 2624815 -179790427 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2624918 2625158 -179790084 + MLT1C LTR MaLR 210 455 -12 1479 292 71 9 chr6 2625901 2626452 -179788790 + L1ME3A LINE L1 5545 6129 -41 279 347 76 0 chr6 2626828 2626972 -179788270 - LTR33 LTR ERVL -193 328 174 1838 141 0 7 chr6 2627413 2627710 -179787532 + AluJo SINE Alu 4 298 -14 2002 126 0 10 chr6 2628392 2628701 -179786541 + AluSc SINE Alu 1 306 -3 239 323 72 4 chr6 2631641 2631777 -179783465 + MIR SINE MIR 50 193 -32 444 309 33 0 chr6 2632859 2633011 -179782231 - MIR SINE MIR -58 204 48 920 196 42 8 chr6 2633026 2633311 -179781931 + MER58 DNA MER1_type 2 2407 -13 781 195 50 6 chr6 2633335 2633494 -179781748 - MER5A DNA MER1_type -22 167 2 4925 107 74 39 chr6 2635132 2635455 -179779787 - LTR12 LTR ERV1 0 826 516 1472 117 4 9 chr6 2635455 2635686 -179779556 + AluY SINE Alu 81 310 -1 4925 107 74 39 chr6 2635686 2636160 -179779082 - LTR12 LTR ERV1 -310 516 1 2070 118 7 0 chr6 2636395 2636700 -179778542 + AluSx SINE Alu 1 307 -5 340 303 22 0 chr6 2637192 2637281 -179777961 - MIR3 SINE MIR -21 187 97 1749 203 68 6 chr6 2637343 2637825 -179777417 - MER69 DNA AcHobo -2 2524 2010 893 261 89 7 chr6 2637823 2638103 -179777139 - MER69 DNA AcHobo -658 568 266 * 439 297 134 25 chr6 2638562 2638882 -179776360 + L1MEd LINE L1 807 1161 -4958 3450 182 37 17 chr6 2638903 2639550 -179775692 - MER21B LTR ERV1 -1 862 203 725 191 86 129 chr6 2639695 2639951 -179775291 - MER21B LTR ERV1 -618 245 1 2169 234 55 32 chr6 2639966 2640332 -179774910 - MER69 DNA AcHobo -127 2399 2043 2903 203 56 26 chr6 2640332 2641030 -179774212 + MER72 LTR ERV1 1 719 -3 2169 234 55 32 chr6 2641030 2641579 -179773663 - MER69 DNA AcHobo -483 2043 1451 1253 252 85 85 chr6 2641691 2642207 -179773035 - MER69 DNA AcHobo -707 519 4 531 251 95 45 chr6 2642296 2642475 -179772767 + Charlie2 DNA MER1_type 144 331 -2451 992 246 68 0 chr6 2642486 2642766 -179772476 + Charlie2 DNA MER1_type 1906 2204 -658 579 257 67 9 chr6 2642854 2643064 -179772178 + LTR37A LTR ERV1 46 267 -159 233 200 33 0 chr6 2643085 2643145 -179772097 + (TG)n Simple_repeat Simple_repeat 2 63 0 297 219 0 0 chr6 2644469 2644542 -179770700 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2644736 2645039 -179770203 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2645140 2645340 -179769902 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2645721 2645765 -179769477 - L3b LINE CR1 -13 1570 1528 255 268 130 71 chr6 2645967 2646236 -179769006 - MER20B DNA MER1_type -209 574 290 4154 264 39 37 chr6 2646348 2647451 -179767791 + L1M4 LINE L1 2922 4032 -2114 1800 135 8 0 chr6 2647451 2647717 -179767525 - AluSq SINE Alu -45 268 1 4154 264 39 37 chr6 2647717 2648262 -179766980 + L1M4 LINE L1 4032 4574 -1572 231 211 105 0 chr6 2648337 2648394 -179766848 + MLT1D LTR MaLR 28 90 -415 1063 104 0 0 chr6 2648395 2648530 -179766712 + AluSq/x SINE Alu 1 135 -177 7236 162 21 41 chr6 2648530 2649931 -179765311 + L1MC3 LINE L1 6411 7784 -1 839 56 39 39 chr6 2650093 2650273 -179764969 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2045 163 115 46 chr6 2650689 2651210 -179764032 + LTR31 LTR ERV1 60 616 -3 1057 244 238 18 chr6 2651401 2651959 -179763283 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2652294 2652623 -179762619 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2652881 2653086 -179762156 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2653137 2653167 -179762075 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2653172 2653207 -179762035 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2653207 2653495 -179761747 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2654236 2654588 -179760654 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2654669 2655371 -179759871 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2655781 2655896 -179759346 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2655896 2656251 -179758991 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2656251 2656331 -179758911 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2656942 2657251 -179757991 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2657285 2657434 -179757808 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2657721 2657799 -179757443 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2659614 2660345 -179754897 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2660390 2660575 -179754667 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2660641 2660729 -179754513 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2660792 2660829 -179754413 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2662215 2662366 -179752876 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2662858 2663146 -179752096 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2663328 2663423 -179751819 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2663865 2664006 -179751236 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2664170 2664354 -179750888 - AluSg/x SINE Alu -4 308 114 869 81 37 17 chr6 2664486 2664719 -179750523 + (TCTA)n Simple_repeat Simple_repeat 1 416 0 2480 154 78 83 chr6 2665114 2665677 -179749565 + LTR31 LTR ERV1 60 619 0 231 119 24 24 chr6 2665681 2665723 -179749519 - MER63A DNA MER1_type -166 44 3 360 316 65 26 chr6 2665796 2665861 -179749381 + L2 LINE L2 2684 2745 -569 2021 122 40 3 chr6 2665861 2666157 -179749085 + AluSc SINE Alu 1 307 -2 360 316 65 26 chr6 2666157 2666246 -179748996 + L2 LINE L2 2745 2844 -470 392 194 14 0 chr6 2666351 2666423 -179748819 - MER81 DNA DNA -20 94 22 234 301 87 10 chr6 2666679 2666782 -179748460 + L2 LINE L2 3162 3272 0 291 229 97 69 chr6 2668543 2668718 -179746524 - MER117 DNA MER1_type -17 180 1 866 211 78 0 chr6 2670307 2670511 -179744731 - MER58A DNA MER1_type -4 220 1 376 262 170 7 chr6 2672955 2673096 -179742146 - MIR SINE MIR -11 251 88 306 313 21 0 chr6 2673353 2673449 -179741793 + (CA)n Simple_repeat Simple_repeat 1 98 0 740 191 59 0 chr6 2673763 2673899 -179741343 - FRAM SINE Alu -11 165 22 250 304 60 60 chr6 2674378 2674546 -179740696 + MER5B DNA MER1_type 4 171 -7 2016 120 0 24 chr6 2674557 2674848 -179740394 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr6 2675494 2675532 -179739710 + (A)n Simple_repeat Simple_repeat 1 38 0 2268 90 7 3 chr6 2677123 2677413 -179737829 - AluSg SINE Alu -19 291 1 392 220 22 0 chr6 2677930 2678021 -179737221 + L1ME4a LINE L1 5636 5728 -393 250 297 152 51 chr6 2678077 2678232 -179737010 + L1ME4a LINE L1 5819 5957 -164 1878 134 43 7 chr6 2678232 2678531 -179736711 + AluSq SINE Alu 1 310 -3 250 297 152 51 chr6 2678531 2678631 -179736611 + L1ME4a LINE L1 5957 6100 -21 686 211 0 0 chr6 2678695 2678834 -179736408 + FLAM_A SINE Alu 4 142 0 248 316 31 10 chr6 2680114 2680212 -179735030 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2680428 2680466 -179734776 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2680614 2680701 -179734541 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2680702 2680816 -179734426 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2681200 2681262 -179733980 + AT_rich Low_complexity Low_complexity 1 62 0 1370 194 93 14 chr6 2681265 2681495 -179733747 + AluJo SINE Alu 1 258 -54 2042 152 123 5 chr6 2681495 2681876 -179733366 - MSTA LTR MaLR 0 428 3 1370 194 93 14 chr6 2681876 2681924 -179733318 + AluJo SINE Alu 258 301 -11 921 105 7 56 chr6 2681939 2682082 -179733160 + FRAM SINE Alu 10 145 -31 1563 156 9 83 chr6 2682563 2682890 -179732352 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2683461 2683687 -179731555 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2683950 2683985 -179731257 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2683985 2684142 -179731100 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2684142 2684284 -179730958 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2685808 2685936 -179729306 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2687050 2687216 -179728026 + C-rich Low_complexity Low_complexity 3 161 0 227 350 10 19 chr6 2687349 2687452 -179727790 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2687710 2688037 -179727205 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2688372 2688780 -179726462 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2688786 2688826 -179726416 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2688839 2688891 -179726351 + MER58 DNA MER1_type 2357 2408 -12 2431 271 184 20 chr6 2689056 2690581 -179724661 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2690581 2690677 -179724565 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2690749 2690831 -179724411 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2690831 2691060 -179724182 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2691130 2691311 -179723931 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2692443 2692559 -179722683 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2692590 2692916 -179722326 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2693339 2693764 -179721478 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2693784 2694156 -179721086 + MLT1C LTR MaLR 3 393 -74 2880 155 41 2 chr6 2694192 2694336 -179720906 - L1MA9 LINE L1 0 6312 6175 306 0 0 0 chr6 2694336 2694370 -179720872 + (TG)n Simple_repeat Simple_repeat 2 35 0 2880 155 41 2 chr6 2694370 2694734 -179720508 - L1MA9 LINE L1 -137 6175 5784 331 121 0 52 chr6 2694743 2694801 -179720441 - Alu SINE Alu -2 300 246 418 219 0 10 chr6 2694801 2694897 -179720345 - L1 LINE L1 -1397 4749 4655 799 155 20 37 chr6 2695002 2695198 -179720044 + L1M2 LINE L1 5218 5418 -766 279 109 0 0 chr6 2695213 2695259 -179719983 + L1M2 LINE L1 5388 5433 -864 374 280 98 8 chr6 2695300 2695432 -179719810 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2695599 2695817 -179719425 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2695957 2696377 -179718865 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2696717 2697073 -179718169 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2697386 2698108 -179717134 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2698195 2698759 -179716483 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2699773 2699863 -179715379 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2700083 2700148 -179715094 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2700654 2700976 -179714266 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2700976 2701278 -179713964 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2701278 2701676 -179713566 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2701676 2702027 -179713215 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2702027 2702334 -179712908 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2702334 2702362 -179712880 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2702362 2702490 -179712752 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2702785 2702954 -179712288 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2702990 2703103 -179712139 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2703498 2703568 -179711674 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2705030 2705428 -179709814 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2705428 2705734 -179709508 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2705734 2705905 -179709337 + L1M4 LINE L1 2853 3017 -3129 611 174 0 0 chr6 2706272 2706381 -179708861 + L1MA9 LINE L1 6204 6312 0 531 153 0 0 chr6 2709827 2709912 -179705330 - FLAM SINE Alu -19 124 40 2421 71 0 3 chr6 2711556 2711853 -179703389 + AluY SINE Alu 1 296 -15 245 216 80 23 chr6 2712081 2712169 -179703073 - MLT1L LTR MaLR -2 613 521 403 273 22 43 chr6 2712198 2712337 -179702905 - MLT1J LTR MaLR -150 361 226 726 203 52 123 chr6 2712981 2713281 -179701961 - L1ME2 LINE L1 -10 6154 5881 887 120 38 0 chr6 2713281 2713414 -179701828 - L1MA2 LINE L1 0 6304 6167 726 203 52 123 chr6 2713414 2713462 -179701780 - L1ME2 LINE L1 -283 5881 5831 2166 115 0 13 chr6 2715009 2715313 -179699929 - AluSx SINE Alu -12 300 1 630 269 42 0 chr6 2715621 2715788 -179699454 + MIR SINE MIR 41 214 -48 313 263 23 83 chr6 2717203 2717336 -179697906 + MIR SINE MIR 58 182 -80 1062 185 30 5 chr6 2718823 2719023 -179696219 - MER58B DNA MER1_type -8 333 129 23 33 0 0 chr6 2719301 2719331 -179695911 + AT_rich Low_complexity Low_complexity 1 30 0 277 269 9 56 chr6 2719561 2719669 -179695573 + LTR33 LTR ERVL 1 103 -418 1047 189 0 0 chr6 2720118 2720293 -179694949 - FAM SINE Alu 0 175 1 269 324 22 0 chr6 2720427 2720566 -179694676 - L1MDa LINE L1 -1945 4595 4454 417 262 72 51 chr6 2720583 2720820 -179694422 - L1MDa LINE L1 -2170 4370 4129 2405 87 3 0 chr6 2721973 2722271 -179692971 + AluSp SINE Alu 1 299 -14 7213 218 49 26 chr6 2722401 2725104 -179690138 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2725104 2725406 -179689836 - AluSp SINE Alu -10 303 1 7213 218 49 26 chr6 2725406 2726125 -179689117 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2726352 2726617 -179688625 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2726847 2727001 -179688241 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2727151 2727244 -179687998 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2727748 2728162 -179687080 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2728937 2729053 -179686189 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2729753 2729941 -179685301 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2731539 2731608 -179683634 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2731632 2732385 -179682857 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2732385 2732429 -179682813 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2732429 2732528 -179682714 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2732522 2732903 -179682339 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2732903 2732938 -179682304 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2732938 2734315 -179680927 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2734315 2734336 -179680906 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2734336 2739126 -179676116 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2739134 2739580 -179675662 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2740505 2740535 -179674707 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2740603 2740778 -179674464 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2740793 2741033 -179674209 + LTR16A LTR ERVL 54 292 -158 1113 314 58 12 chr6 2741514 2742030 -179673212 + HERV16 LTR ERVL 395 934 -4062 767 301 39 12 chr6 2742115 2742447 -179672795 + HERV16 LTR ERVL 1081 1421 -3575 2435 297 55 23 chr6 2742549 2742664 -179672578 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2742664 2742985 -179672257 + AluJo SINE Alu 1 311 -1 2125 111 0 0 chr6 2742987 2743276 -179671966 + AluSx SINE Alu 3 291 -21 2435 297 55 23 chr6 2743276 2744479 -179670763 + HERV16 LTR ERVL 1723 3008 -2496 1026 217 74 106 chr6 2744492 2745004 -179670238 - MLT1D LTR MaLR -1 504 5 451 313 116 52 chr6 2745070 2745649 -179669593 + HERV16 LTR ERVL 3163 3778 -1986 847 186 96 0 chr6 2745867 2746055 -179669187 - MER20 DNA MER1_type -13 206 1 191 244 100 67 chr6 2746360 2746450 -179668792 - L2 LINE L2 -1 3271 3179 545 193 88 64 chr6 2746453 2746531 -179668711 - MER45A DNA AcHobo -1403 178 103 2212 104 0 0 chr6 2746531 2746828 -179668414 + AluSx SINE Alu 11 307 -5 545 193 88 64 chr6 2746828 2746920 -179668322 - MER45A DNA AcHobo -1478 103 4 238 261 228 0 chr6 2747469 2747561 -179667681 + MIR SINE MIR 32 144 -64 396 0 0 0 chr6 2747730 2747774 -179667468 + (TG)n Simple_repeat Simple_repeat 1 44 0 1758 157 77 65 chr6 2748532 2748577 -179666665 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2748577 2748599 -179666643 + (TC)n Simple_repeat Simple_repeat 2 23 0 1758 157 77 65 chr6 2748599 2748955 -179666287 - MLT2D LTR ERVL -46 368 5 410 232 172 0 chr6 2749333 2749484 -179665758 + MLT1I LTR MaLR 2 178 -231 1822 189 34 11 chr6 2749848 2750203 -179665039 + MLT1A1 LTR MaLR 1 363 -2 367 317 87 6 chr6 2750704 2750887 -179664355 + L1MC2 LINE L1 3917 4114 -2032 535 269 56 121 chr6 2751052 2751207 -179664035 + L1MC2 LINE L1 4340 4503 -1643 2160 113 0 0 chr6 2751207 2751509 -179663733 - AluSx SINE Alu -10 302 1 535 269 56 121 chr6 2751509 2751899 -179663343 + L1MC2 LINE L1 4503 4856 -1290 236 287 108 6 chr6 2751924 2752081 -179663161 + L1P LINE L1 4875 5047 -1099 831 143 0 0 chr6 2752753 2752886 -179662356 - AluSg/x SINE Alu -1 311 179 206 268 28 0 chr6 2752886 2752957 -179662285 - L2 LINE L2 -45 3227 3155 2457 50 0 0 chr6 2753113 2753413 -179661829 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2754047 2754228 -179661014 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 385 187 0 37 chr6 2754271 2754378 -179660864 + GA-rich Low_complexity Low_complexity 2 104 0 686 298 67 76 chr6 2756737 2756970 -179658272 + L1MC2 LINE L1 5309 5537 -635 2031 103 0 0 chr6 2756970 2757243 -179657999 + AluSc SINE Alu 30 302 -7 686 298 67 76 chr6 2757243 2757369 -179657873 + L1MC2 LINE L1 5537 5663 -509 318 246 27 27 chr6 2757395 2757505 -179657737 - MLT1F1 LTR MaLR -434 133 24 661 156 14 7 chr6 2757505 2757646 -179657596 - L1MC3 LINE L1 -700 7085 6944 269 277 69 30 chr6 2757785 2757886 -179657356 - L2 LINE L2 -20 3293 3189 6274 123 66 7 chr6 2759088 2760173 -179655069 - L1MC1 LINE L1 -9 6324 5175 599 288 131 13 chr6 2760810 2760967 -179654275 - MIR SINE MIR -5 257 63 1848 153 0 23 chr6 2760967 2761275 -179653967 - AluJo SINE Alu -11 301 1 599 288 131 13 chr6 2761275 2761346 -179653896 - MIR SINE MIR -199 63 2 548 254 65 0 chr6 2761346 2761481 -179653761 + MIR SINE MIR 47 190 -72 380 161 0 62 chr6 2761617 2761698 -179653544 - MLT1D LTR MaLR 0 505 430 618 65 0 0 chr6 2761698 2761775 -179653467 - L1P2 LINE L1 -501 5653 5577 3190 42 8 0 chr6 2761775 2762156 -179653086 + L1PA7 LINE L1 5759 6143 -11 2016 230 11 45 chr6 2762184 2762653 -179652589 - MLT1D LTR MaLR -52 453 1 5089 110 7 1 chr6 2763099 2763829 -179651413 - L1PA14 LINE L1 -65 6096 5363 425 302 34 13 chr6 2764321 2764470 -179650772 - MIR3 SINE MIR -23 185 34 205 286 13 26 chr6 2764972 2765049 -179650193 + L2 LINE L2 3016 3091 -181 2188 107 3 0 chr6 2765061 2765360 -179649882 - AluSx SINE Alu -12 300 1 1971 172 16 44 chr6 2765495 2765879 -179649363 + MSTB LTR MaLR 54 426 0 415 278 190 19 chr6 2766383 2766588 -179648654 + MIR SINE MIR 13 252 -10 2180 180 31 5 chr6 2766855 2767272 -179647970 + L1MC2 LINE L1 5854 6281 -63 325 260 13 0 chr6 2767280 2767357 -179647885 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2768631 2768661 -179646581 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1450 199 93 54 chr6 2769756 2770198 -179645044 + MLT1E3 LTR MaLR 104 562 -62 706 262 11 11 chr6 2770201 2770423 -179644819 + L1PB4 LINE L1 5950 6171 0 383 184 0 71 chr6 2770430 2770528 -179644714 + MLT1E LTR MaLR 503 593 0 708 135 6 140 chr6 2770852 2770941 -179644301 - MER96B DNA MER1_type? -4 413 314 1058 141 11 6 chr6 2770941 2771118 -179644124 - L1MB3 LINE L1 -1 6182 6005 708 135 6 140 chr6 2771118 2771139 -179644103 - MER96B DNA MER1_type? -103 314 292 2209 195 39 9 chr6 2771139 2771600 -179643642 - L1MC1 LINE L1 -8 6325 5851 708 135 6 140 chr6 2771600 2771666 -179643576 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2774664 2774689 -179640553 + (T)n Simple_repeat Simple_repeat 1 25 0 592 155 26 0 chr6 2776149 2776265 -179638977 - L1MB3 LINE L1 -1 6182 6064 959 178 53 14 chr6 2777240 2777448 -179637794 + MER20 DNA MER1_type 1 216 -3 2179 108 0 13 chr6 2777977 2778284 -179636958 - AluSx SINE Alu -9 303 1 282 288 14 0 chr6 2778441 2778514 -179636728 + MER112 DNA MER1_type 179 252 -8 1658 196 46 0 chr6 2778565 2778912 -179636330 + MLT2D LTR ERVL 1 363 -51 409 163 150 94 chr6 2779000 2779160 -179636082 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2779440 2779609 -179635633 + MLT1I LTR MaLR 266 409 0 435 322 71 43 chr6 2780966 2781177 -179634065 + MIR SINE MIR 20 236 -26 281 262 117 55 chr6 2782662 2782807 -179632435 + MIR SINE MIR 33 186 -76 2029 73 0 18 chr6 2784464 2784736 -179630506 - AluSq SINE Alu -13 300 34 2852 218 64 13 chr6 2785279 2785980 -179629262 - L1MB3 LINE L1 -4 6179 5443 470 314 5 19 chr6 2786279 2786486 -179628756 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2786512 2786565 -179628677 + (TG)n Simple_repeat Simple_repeat 1 53 0 2176 107 0 0 chr6 2786731 2787022 -179628220 + AluSc SINE Alu 1 291 -18 1064 282 40 26 chr6 2787561 2788015 -179627227 + SST1 Satellite centromeric 1 460 -1103 725 318 51 11 chr6 2788074 2788448 -179626794 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2788480 2788534 -179626708 + (TG)n Simple_repeat Simple_repeat 1 54 0 317 238 107 89 chr6 2789866 2790034 -179625208 + MER5B DNA MER1_type 1 171 -7 343 266 12 0 chr6 2790459 2790632 -179624610 + (CA)n Simple_repeat Simple_repeat 2 176 0 228 207 175 35 chr6 2791595 2791736 -179623506 + MIR SINE MIR 16 177 -60 1675 172 14 0 chr6 2791757 2792054 -179623188 + AluJo SINE Alu 1 301 -11 2509 222 94 43 chr6 2792092 2792844 -179622398 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2793555 2793843 -179621399 - LTR16C LTR ERVL -8 483 180 644 164 6 18 chr6 2795324 2795495 -179619747 + (TG)n Simple_repeat Simple_repeat 2 170 0 275 237 0 22 chr6 2795510 2795645 -179619597 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2795667 2795764 -179619478 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2796102 2796313 -179618929 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2796651 2798754 -179616488 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2798754 2799063 -179616179 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2799063 2800054 -179615188 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2800195 2800495 -179614747 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2800495 2800663 -179614579 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2800784 2801990 -179613252 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2801990 2802304 -179612938 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2802304 2803393 -179611849 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2803393 2803696 -179611546 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2803696 2804702 -179610540 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2804714 2805162 -179610080 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2806232 2806265 -179608977 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2807028 2807148 -179608094 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2807183 2807439 -179607803 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2807667 2807818 -179607424 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2808056 2808365 -179606877 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2809541 2809572 -179605670 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2809644 2809695 -179605547 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2809866 2809983 -179605259 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2809996 2810198 -179605044 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2812134 2812617 -179602625 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2814927 2814957 -179600285 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2815340 2815563 -179599679 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2816639 2816667 -179598575 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2817125 2817197 -179598045 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2817767 2817791 -179597451 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2817803 2818115 -179597127 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2819099 2819410 -179595832 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2819828 2819956 -179595286 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2821854 2821958 -179593284 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2821993 2822029 -179593213 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2822758 2823197 -179592045 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2823607 2823895 -179591347 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2824464 2824488 -179590754 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2824826 2825136 -179590106 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2825715 2825889 -179589353 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2826190 2826307 -179588935 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2826698 2826884 -179588358 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2826919 2826990 -179588252 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2827727 2828017 -179587225 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2830575 2830717 -179584525 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2832407 2832450 -179582792 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2832450 2832733 -179582509 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2832935 2833462 -179581780 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2833545 2833875 -179581367 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2834730 2834804 -179580438 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2834804 2835113 -179580129 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2835113 2835248 -179579994 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2835735 2835901 -179579341 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2836114 2836417 -179578825 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2837063 2837374 -179577868 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2838822 2838882 -179576360 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2839839 2840145 -179575097 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2841918 2842127 -179573115 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2842772 2843074 -179572168 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2843149 2843206 -179572036 + L3 LINE CR1 667 725 -852 180 0 0 0 chr6 2843477 2843497 -179571745 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1275 93 0 0 chr6 2843507 2843713 -179571529 + (TGG)n Simple_repeat Simple_repeat 1 206 0 223 121 35 35 chr6 2843816 2843874 -179571368 + (GTGTG)n Simple_repeat Simple_repeat 2 59 0 681 177 0 0 chr6 2843875 2844022 -179571220 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2844022 2844247 -179570995 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2845568 2845664 -179569578 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2845668 2846017 -179569225 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2846098 2846126 -179569116 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2846130 2846445 -179568797 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2846462 2846552 -179568690 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2848558 2848587 -179566655 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2848630 2848947 -179566295 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2849617 2849747 -179565495 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2851053 2851215 -179564027 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2851825 2852147 -179563095 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2852641 2852682 -179562560 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2852829 2852953 -179562289 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2853013 2853300 -179561942 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2855004 2855047 -179560195 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2855730 2855890 -179559352 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2857460 2857482 -179557760 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2859299 2859354 -179555888 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2859637 2860126 -179555116 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2860502 2860722 -179554520 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2862229 2862417 -179552825 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2862441 2862755 -179552487 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2863278 2863467 -179551775 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2863513 2863655 -179551587 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2863631 2863923 -179551319 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2863923 2864333 -179550909 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2864333 2864625 -179550617 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2864625 2864778 -179550464 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2866047 2866239 -179549003 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2866312 2866457 -179548785 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2866986 2867143 -179548099 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2867249 2867558 -179547684 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2867681 2867740 -179547502 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2867844 2867950 -179547292 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2869206 2869345 -179545897 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2869345 2869441 -179545801 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2869473 2869770 -179545472 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2869772 2869858 -179545384 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2869858 2869937 -179545305 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2869937 2870231 -179545011 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2870231 2870543 -179544699 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2870543 2870662 -179544580 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2871090 2871229 -179544013 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2871235 2871863 -179543379 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2871863 2871907 -179543335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2871907 2872183 -179543059 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2872362 2872663 -179542579 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2873210 2873237 -179542005 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2873240 2873528 -179541714 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2874252 2874516 -179540726 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2874526 2874843 -179540399 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2874852 2875023 -179540219 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2875956 2876260 -179538982 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2877033 2877318 -179537924 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2877360 2877490 -179537752 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2880841 2881054 -179534188 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2881567 2881689 -179533553 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2883140 2883278 -179531964 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2883950 2884050 -179531192 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2884228 2884329 -179530913 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2885241 2885401 -179529841 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2885618 2885777 -179529465 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2886401 2886689 -179528553 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2887338 2887451 -179527791 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2888170 2888336 -179526906 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2888435 2888522 -179526720 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2888523 2888586 -179526656 + AluS SINE Alu 2 64 -248 256 200 210 10 chr6 2889449 2889549 -179525693 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2889894 2890041 -179525201 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2890457 2890540 -179524702 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2891691 2892231 -179523011 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2892300 2892538 -179522704 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2894993 2895300 -179519942 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2895321 2895647 -179519595 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2896698 2896993 -179518249 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2897832 2897913 -179517329 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2901546 2901810 -179513432 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2901810 2902084 -179513158 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2902834 2903229 -179512013 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2903229 2903364 -179511878 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2903364 2904034 -179511208 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2904624 2904801 -179510441 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2904885 2905086 -179510156 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2905088 2906023 -179509219 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2906693 2906932 -179508310 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2907233 2907411 -179507831 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2907684 2907838 -179507404 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2907861 2907883 -179507359 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2908027 2908275 -179506967 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2908315 2908462 -179506780 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2908462 2908757 -179506485 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2908757 2908873 -179506369 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2908900 2909042 -179506200 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2909389 2909506 -179505736 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2909514 2909617 -179505625 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2909630 2909995 -179505247 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2910015 2910189 -179505053 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2910890 2911071 -179504171 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2911264 2911542 -179503700 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2911993 2913182 -179502060 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2913215 2913487 -179501755 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2913621 2913756 -179501486 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2914533 2914563 -179500679 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2914936 2914973 -179500269 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2915101 2915180 -179500062 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2915397 2915423 -179499819 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2915447 2915523 -179499719 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2915582 2915610 -179499632 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2916509 2916622 -179498620 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2918756 2918788 -179496454 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2918813 2918838 -179496404 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2920896 2921115 -179494127 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2921498 2921556 -179493686 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2921724 2921841 -179493401 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2923492 2923514 -179491728 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2923632 2924031 -179491211 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2924273 2924474 -179490768 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2925343 2925393 -179489849 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2926251 2926283 -179488959 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2927868 2927908 -179487334 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2928080 2928164 -179487078 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2930261 2930354 -179484888 - MIR SINE MIR -49 213 123 577 198 142 6 chr6 2931170 2931332 -179483910 - MIR SINE MIR -71 191 8 258 315 36 0 chr6 2935602 2935713 -179479529 - HAL1 LINE L1 -702 1805 1691 644 293 168 19 chr6 2935755 2936172 -179479070 - HAL1 LINE L1 -620 1887 1409 320 143 89 0 chr6 2936175 2936231 -179479011 - HAL1 LINE L1 -1144 1363 1303 2266 98 0 25 chr6 2936232 2936549 -179478693 - AluSx SINE Alu -3 309 1 834 277 126 16 chr6 2936549 2937131 -179478111 - L2 LINE L2 -10 3303 2651 251 356 40 0 chr6 2937156 2937305 -179477937 - HAL1 LINE L1 -1879 628 474 529 287 62 14 chr6 2937391 2937600 -179477642 - HAL1 LINE L1 -2278 229 11 2159 123 0 16 chr6 2937631 2937947 -179477295 - AluSx SINE Alu -1 311 1 2829 29 0 0 chr6 2937979 2938289 -179476953 + AluYb8 SINE Alu 1 310 -8 2180 118 0 0 chr6 2938956 2939244 -179475998 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2939248 2939272 -179475970 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 375 226 96 78 chr6 2939932 2940162 -179475080 - LTR33 LTR ERVL -169 352 119 200 209 0 0 chr6 2940587 2940630 -179474612 + L2 LINE L2 3224 3266 -6 393 215 0 93 chr6 2940877 2941049 -179474193 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2941053 2941092 -179474150 + (TG)n Simple_repeat Simple_repeat 1 39 0 2421 91 0 0 chr6 2941300 2941597 -179473645 - AluSx SINE Alu -15 297 1 372 294 166 5 chr6 2941698 2941909 -179473333 + MIR SINE MIR 15 259 -3 280 347 67 0 chr6 2942222 2942372 -179472870 - MIR SINE MIR 0 262 103 688 208 116 29 chr6 2942442 2942615 -179472627 - MER5A DNA MER1_type 0 189 2 225 219 74 12 chr6 2942959 2943041 -179472201 + MER91 DNA MER1_type 105 196 0 258 187 37 44 chr6 2944153 2944234 -179471008 + MIR3 SINE MIR 101 168 -40 1865 106 0 0 chr6 2944252 2944526 -179470716 + AluSg SINE Alu 46 319 0 207 348 65 0 chr6 2944674 2944766 -179470476 + MIR3 SINE MIR 83 180 -28 257 253 145 24 chr6 2945565 2945731 -179469511 + MER5A DNA MER1_type 1 186 -3 2545 54 0 3 chr6 2945736 2946034 -179469208 + AluY SINE Alu 1 297 -14 761 65 9 0 chr6 2947198 2947306 -179467936 + (TCC)n Simple_repeat Simple_repeat 1 109 0 309 266 73 64 chr6 2948024 2948257 -179466985 + MLT1K LTR MaLR 351 585 -3 2365 107 0 0 chr6 2948422 2948732 -179466510 - AluSx SINE Alu -2 310 1 186 188 21 21 chr6 2949443 2949491 -179465751 - L3b LINE CR1 -8 1575 1528 2596 185 8 4 chr6 2949882 2950352 -179464890 - MER70A LTR ERVL 0 472 1 1776 185 49 3 chr6 2950358 2950854 -179464388 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2950854 2950882 -179464360 + AT_rich Low_complexity Low_complexity 1 28 0 3498 5 0 0 chr6 2950882 2951265 -179463977 - L1HS LINE L1 -3 6152 5770 14040 176 54 28 chr6 2951268 2952629 -179462613 - MER70A-int LTR ERVL -549 4474 3150 249 216 0 0 chr6 2952629 2952680 -179462562 + MER9 LTR ERVK 461 511 0 14040 176 54 28 chr6 2952680 2954049 -179461193 - MER70A-int LTR ERVL -1873 3150 1621 2245 160 76 10 chr6 2954049 2954343 -179460899 - MER70A-int LTR ERVL -3832 1191 918 1748 192 27 0 chr6 2954343 2954671 -179460571 - MER1B DNA MER1_type 0 337 1 2245 160 76 10 chr6 2954671 2955156 -179460086 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2955156 2955201 -179460041 + (TG)n Simple_repeat Simple_repeat 2 46 0 2245 160 76 10 chr6 2955201 2955386 -179459856 - MER70A-int LTR ERVL -4556 467 1 954 144 19 91 chr6 2955386 2955554 -179459688 - MER70A LTR ERVL 0 472 320 4171 142 23 34 chr6 2955554 2956287 -179458955 + LTR8A LTR ERV1 1 725 -2 954 144 19 91 chr6 2956287 2956326 -179458916 - MER70A LTR ERVL -152 320 280 603 256 30 24 chr6 2956360 2956528 -179458714 + HAL1 LINE L1 539 707 -1800 272 272 25 12 chr6 2956536 2956617 -179458625 + HAL1 LINE L1 745 826 -1681 1096 253 80 26 chr6 2956654 2957041 -179458201 + HAL1 LINE L1 1404 1811 -696 461 189 27 18 chr6 2957198 2957309 -179457933 + HAL1 LINE L1 1690 1801 -706 3265 153 131 37 chr6 2957364 2957503 -179457739 + L1MA9 LINE L1 5483 5608 -704 1908 163 20 3 chr6 2957503 2957809 -179457433 + AluJo SINE Alu 1 311 -1 3265 153 131 37 chr6 2957809 2958423 -179456819 + L1MA9 LINE L1 5608 6307 -5 629 257 151 29 chr6 2958434 2958851 -179456391 + HAL1 LINE L1 1812 2279 -228 917 192 33 23 chr6 2960654 2960868 -179454374 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2960875 2960936 -179454306 + (TA)n Simple_repeat Simple_repeat 2 62 0 780 208 36 24 chr6 2960951 2961119 -179454123 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2961120 2961206 -179454036 + (TA)n Simple_repeat Simple_repeat 1 87 0 407 181 0 0 chr6 2961206 2961278 -179453964 + MER116 DNA Mariner 5 76 -4 218 250 136 34 chr6 2961466 2961554 -179453688 + MIR SINE MIR 137 233 -29 2444 103 0 0 chr6 2961796 2962107 -179453135 + AluSx SINE Alu 1 311 -1 749 221 12 0 chr6 2962131 2962144 -179453098 - L1MA10 LINE L1 -1 6333 6321 748 234 95 20 chr6 2962144 2962396 -179452846 - L1ME1 LINE L1 -5 6161 5891 2330 55 4 0 chr6 2962402 2962675 -179452567 - AluY SINE Alu -10 301 28 270 275 0 0 chr6 2962779 2962848 -179452394 - AluS SINE Alu -230 69 1 2183 176 72 133 chr6 2962851 2963167 -179452075 - L1ME2 LINE L1 -267 5897 5564 849 159 0 0 chr6 2963167 2963299 -179451943 + FLAM_C SINE Alu 2 133 0 2183 176 72 133 chr6 2963299 2963611 -179451631 - L1ME2 LINE L1 -600 5564 5235 1229 183 5 0 chr6 2963611 2963825 -179451417 + L1PB4 LINE L1 5935 6154 -2 2183 176 72 133 chr6 2963825 2964449 -179450793 - L1ME2 LINE L1 -929 5235 4724 751 200 0 0 chr6 2964456 2964581 -179450661 + FLAM_C SINE Alu 3 127 -16 7431 213 46 48 chr6 2964586 2965326 -179449916 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2965326 2965347 -179449895 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1654 183 4 0 chr6 2965349 2965623 -179449619 - AluJo SINE Alu -26 286 12 7431 213 46 48 chr6 2965623 2967162 -179448080 - L1ME2 LINE L1 -2154 3992 2453 2076 135 0 0 chr6 2969072 2969383 -179445859 + L1PA16 LINE L1 5483 5793 -373 415 137 14 0 chr6 2969383 2969453 -179445789 + L1PA16 LINE L1 6077 6150 -16 477 285 129 0 chr6 2969504 2969690 -179445552 + MIR SINE MIR 20 229 -33 294 206 11 0 chr6 2970409 2970489 -179444753 + L1ME3A LINE L1 6007 6091 -79 2203 119 0 0 chr6 2970611 2970913 -179444329 + AluY SINE Alu 1 302 -9 639 311 175 10 chr6 2971741 2972352 -179442890 - L1M4 LINE L1 -1448 4698 3987 697 258 36 22 chr6 2972471 2972535 -179442707 + L1ME2 LINE L1 5728 5790 -376 2052 214 0 0 chr6 2972535 2972900 -179442342 + MLT1A1 LTR MaLR 1 365 0 697 258 36 22 chr6 2972900 2973060 -179442182 + L1ME2 LINE L1 5790 5955 -211 383 288 61 0 chr6 2973067 2973199 -179442043 + L1ME2 LINE L1 6015 6154 -10 401 306 206 29 chr6 2973265 2973561 -179441681 + L2 LINE L2 1830 2072 -1242 2490 63 0 13 chr6 2973561 2973862 -179441380 - AluY SINE Alu -14 297 1 401 306 206 29 chr6 2973862 2974326 -179440916 + L2 LINE L2 2072 2725 -589 35 24 0 0 chr6 2974368 2974410 -179440832 + AT_rich Low_complexity Low_complexity 1 42 0 1833 94 0 84 chr6 2974410 2974490 -179440752 + AluSx SINE Alu 50 135 -177 2297 94 0 0 chr6 2974490 2974776 -179440466 + AluY SINE Alu 1 286 -25 1833 94 0 84 chr6 2974776 2974982 -179440260 + AluSx SINE Alu 135 312 0 1245 101 0 0 chr6 2974982 2975141 -179440101 + AluSg/x SINE Alu 132 290 -20 705 122 0 0 chr6 2976141 2976239 -179439003 + AluJ/FLAM SINE Alu 2 99 -213 2089 122 0 0 chr6 2976258 2976545 -179438697 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2976550 2976581 -179438661 + AT_rich Low_complexity Low_complexity 1 31 0 424 262 59 73 chr6 2976898 2977238 -179438004 - L1M4 LINE L1 -934 5212 4878 243 261 34 67 chr6 2977274 2977393 -179437849 + MER94 DNA DNA 6 120 -14 924 260 124 57 chr6 2977426 2977619 -179437623 - L1M4 LINE L1 -1307 4839 4660 2532 81 0 0 chr6 2977619 2977927 -179437315 + AluSg SINE Alu 1 308 -2 924 260 124 57 chr6 2977927 2978026 -179437216 - L1M4 LINE L1 -1486 4660 4569 1811 130 36 30 chr6 2978026 2978327 -179436915 - AluJo SINE Alu -9 303 1 924 260 124 57 chr6 2978327 2978753 -179436489 - L1M4 LINE L1 -1577 4569 4072 289 294 14 27 chr6 2978764 2978910 -179436332 - L1MDa LINE L1 -3630 2499 2356 360 229 144 65 chr6 2979070 2979376 -179435866 - L1MDa LINE L1 -3809 2320 2031 567 279 124 42 chr6 2979540 2980022 -179435220 - L1MDa LINE L1 -4433 1696 1233 1753 173 3 10 chr6 2980063 2980352 -179434890 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2980352 2980381 -179434861 + AT_rich Low_complexity Low_complexity 1 29 0 437 279 96 100 chr6 2980381 2980983 -179434259 - L1MDa LINE L1 -4949 1170 571 257 297 20 10 chr6 2981410 2981511 -179433731 + MIR SINE MIR 50 151 -57 2379 115 0 0 chr6 2982020 2982332 -179432910 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2983738 2983782 -179431460 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2983793 2984083 -179431159 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 362 211 138 24 chr6 2984279 2984402 -179430840 + MIR SINE MIR 125 261 -1 740 184 0 22 chr6 2985051 2985187 -179430055 + FLAM_A SINE Alu 1 133 0 882 193 0 0 chr6 2986205 2986350 -179428892 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2986354 2986385 -179428857 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2250 111 0 19 chr6 2986758 2987073 -179428169 - AluSx SINE Alu 0 312 4 374 226 0 29 chr6 2987633 2987735 -179427507 - L1MB2 LINE L1 0 6171 6073 364 244 38 53 chr6 2989625 2989756 -179425486 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2990602 2990624 -179424618 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2991051 2991071 -179424171 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2991263 2991284 -179423958 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2991417 2991439 -179423803 + GC_rich Low_complexity Low_complexity 1 22 0 816 196 40 67 chr6 2991783 2992008 -179423234 - MLT1A1 LTR MaLR -146 219 1 7727 203 45 40 chr6 2992008 2993736 -179421506 - MLT1A1-int LTR MaLR 0 1735 1 1362 179 56 88 chr6 2993736 2994110 -179421132 - MLT1A1 LTR MaLR 0 365 4 564 232 149 28 chr6 2994146 2994327 -179420915 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2994809 2994859 -179420383 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2994862 2994883 -179420359 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2995058 2995097 -179420145 + AT_rich Low_complexity Low_complexity 1 39 0 1462 141 4 13 chr6 2995098 2995325 -179419917 + AluJo SINE Alu 87 311 -1 2261 111 6 19 chr6 2995581 2995897 -179419345 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2996169 2996545 -179418697 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2996817 2996894 -179418348 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2996894 2997192 -179418050 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2997192 2997227 -179418015 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2997227 2997529 -179417713 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2997529 2998043 -179417199 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2998141 2998339 -179416903 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2999030 2999320 -179415922 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2999320 2999342 -179415900 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2999614 2999896 -179415346 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2999973 3000278 -179414964 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 3000349 3000500 -179414742 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 3000539 3000616 -179414626 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 3000616 3000814 -179414428 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 3000814 3001128 -179414114 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 3001128 3001264 -179413978 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 3001359 3001455 -179413787 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 3002801 3002922 -179412320 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 3002969 3003151 -179412091 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 3003230 3003405 -179411837 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 3003415 3003486 -179411756 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 3005920 3006225 -179409017 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 3007753 3007782 -179407460 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 3007826 3008123 -179407119 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 3008353 3008457 -179406785 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 3008792 3008906 -179406336 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 3008914 3009456 -179405786 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 3009456 3011220 -179404022 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 3011265 3011397 -179403845 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 3011397 3011592 -179403650 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 3011592 3011959 -179403283 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 3011959 3012038 -179403204 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 3012740 3013161 -179402081 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 3013756 3013992 -179401250 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 3014003 3014030 -179401212 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 3014613 3014679 -179400563 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 3014764 3014847 -179400395 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 3014864 3015140 -179400102 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 3015143 3015555 -179399687 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 3015639 3015739 -179399503 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 3015799 3016327 -179398915 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 3016418 3016522 -179398720 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 3016587 3016959 -179398283 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 3016994 3017178 -179398064 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 3017312 3017611 -179397631 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 3017724 3017846 -179397396 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 3017847 3018068 -179397174 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 3018190 3018282 -179396960 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 3018372 3018477 -179396765 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 3018501 3018562 -179396680 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 3018591 3020129 -179395113 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 3020351 3020403 -179394839 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 3020403 3020455 -179394787 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 3020865 3020902 -179394340 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 3020990 3021066 -179394176 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 3021069 3021378 -179393864 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 3021575 3021889 -179393353 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 3021889 3022270 -179392972 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 3022301 3022362 -179392880 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 3023215 3023532 -179391710 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 3023543 3023780 -179391462 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 3025067 3025332 -179389910 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 3025336 3025357 -179389885 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 3025575 3025676 -179389566 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 3026365 3032343 -179382899 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 3032343 3032653 -179382589 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 3032653 3033085 -179382157 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 3033133 3033215 -179382027 + MLT1J1 LTR MaLR 350 435 -11 525 304 212 23 chr6 3033552 3034023 -179381219 - L2 LINE L2 -930 2384 1825 967 173 37 6 chr6 3034187 3034349 -179380893 - FAM SINE Alu -8 167 1 260 163 38 50 chr6 3034406 3034486 -179380756 + L1M LINE L1 5309 5387 -2421 423 315 76 73 chr6 3034696 3035039 -179380203 - L1ME4a LINE L1 -24 6097 5754 203 170 21 0 chr6 3035090 3035137 -179380105 + CT-rich Low_complexity Low_complexity 3 50 0 323 157 100 0 chr6 3035143 3035213 -179380029 + L1MB2 LINE L1 6088 6164 -7 358 312 109 18 chr6 3035244 3035465 -179379777 - L1ME4a LINE L1 -2099 5709 5469 2441 139 43 26 chr6 3035511 3035934 -179379308 - MSTB1 LTR MaLR 0 432 3 461 332 63 90 chr6 3036071 3036562 -179378680 + L1M4 LINE L1 4207 4684 -1462 1990 141 3 3 chr6 3037052 3037358 -179377884 + AluSx SINE Alu 1 306 -6 552 196 9 9 chr6 3037365 3037477 -179377765 + MER50 LTR ERV1 493 604 -130 4112 144 21 32 chr6 3037567 3038343 -179376899 + L1MB5 LINE L1 5408 6174 0 227 323 0 0 chr6 3038812 3038874 -179376368 + L2 LINE L2 3194 3255 -17 2505 35 0 7 chr6 3038901 3039211 -179376031 + AluY SINE Alu 1 308 -3 391 269 0 10 chr6 3040865 3040969 -179374273 - MIR SINE MIR 0 262 160 212 317 48 28 chr6 3041086 3041231 -179374011 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 3041593 3041618 -179373624 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 3042111 3042133 -179373109 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 3042665 3042769 -179372473 + (TA)n Simple_repeat Simple_repeat 2 110 0 1722 130 66 36 chr6 3044292 3044593 -179370649 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 3044784 3044889 -179370353 + GA-rich Low_complexity Low_complexity 2 105 0 709 124 133 0 chr6 3045355 3045468 -179369774 + FLAM_C SINE Alu 1 128 -5 446 294 69 87 chr6 3046156 3046394 -179368848 + L1M4 LINE L1 2696 2937 -3209 1744 155 55 0 chr6 3046394 3046685 -179368557 + AluJo SINE Alu 1 307 -5 446 294 69 87 chr6 3046685 3046720 -179368522 + L1M4 LINE L1 2937 2971 -3175 2305 118 0 0 chr6 3046720 3047024 -179368218 + AluSx SINE Alu 1 304 -8 446 294 69 87 chr6 3047024 3047273 -179367969 + L1M4 LINE L1 2971 3223 -2923 1094 134 0 41 chr6 3047444 3047615 -179367627 + AluSg/x SINE Alu 121 284 -28 209 0 62 0 chr6 3047615 3047647 -179367595 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 2414 81 10 0 chr6 3048072 3048368 -179366874 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 3048369 3048510 -179366732 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 3048758 3049200 -179366042 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 3050424 3050468 -179364774 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 3050899 3050924 -179364318 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 3052065 3052374 -179362868 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 3053796 3053941 -179361301 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 3053941 3054367 -179360875 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 3054366 3054668 -179360574 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 3054682 3054977 -179360265 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 3055912 3056052 -179359190 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 3056208 3056523 -179358719 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3056707 3056809 -179358433 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 3056830 3057091 -179358151 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 3057172 3057502 -179357740 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 3057521 3057684 -179357558 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 3058223 3059191 -179356051 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3059704 3060009 -179355233 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3060370 3060587 -179354655 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 3061677 3061985 -179353257 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 3062093 3062240 -179353002 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 3062578 3062763 -179352479 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3063057 3063603 -179351639 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3063649 3063965 -179351277 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 3064071 3064257 -179350985 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 3064367 3064664 -179350578 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 3065144 3065442 -179349800 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3066798 3066827 -179348415 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3067142 3067272 -179347970 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3067993 3068150 -179347092 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3068150 3068453 -179346789 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3068453 3068921 -179346321 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 3069299 3069495 -179345747 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 3069748 3069776 -179345466 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 3069827 3070520 -179344722 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 3070533 3070869 -179344373 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 3070935 3071947 -179343295 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 3071964 3072177 -179343065 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 3072192 3072261 -179342981 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 3072461 3072601 -179342641 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 3072757 3073072 -179342170 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 3073256 3073358 -179341884 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 3073379 3073640 -179341602 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 3073721 3074051 -179341191 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 3074070 3074229 -179341013 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 3074768 3075736 -179339506 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 3076249 3076554 -179338688 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 3076915 3077132 -179338110 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 3078222 3078531 -179336711 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 3078641 3078788 -179336454 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 3079126 3079311 -179335931 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 3079605 3080151 -179335091 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 3080197 3080513 -179334729 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 3080619 3080805 -179334437 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 3080915 3081213 -179334029 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 3081693 3081991 -179333251 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 3083346 3083375 -179331867 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 3083690 3083820 -179331422 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 3084541 3084698 -179330544 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 3084698 3085001 -179330241 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 3085001 3085469 -179329773 + MER41B LTR ERV1 156 627 -8 2940 122 54 40 chr6 3085847 3086255 -179328987 - MER4B LTR ERV1 0 766 197 2093 97 29 42 chr6 3086255 3086564 -179328678 - AluSx SINE Alu -7 305 1 2940 122 54 40 chr6 3086564 3086764 -179328478 - MER4B LTR ERV1 -569 197 1 2211 191 48 0 chr6 3087258 3087698 -179327544 - LOR1b LTR ERV1 0 461 1 497 130 11 22 chr6 3087698 3087790 -179327452 - LOR1b-int LTR ERV1 0 8120 8030 * 1552 141 8 4 chr6 3087789 3088052 -179327190 - MER41D-int LTR ERV1 -2056 6064 5801 * 31474 101 37 24 chr6 3088042 3091976 -179323266 - MER41D-int LTR ERV1 -2596 5524 1640 3220 193 43 55 chr6 3091976 3092810 -179322432 - LTR5 LTR ERVK -145 824 1 31474 101 37 24 chr6 3092810 3093596 -179321646 - MER41D-int LTR ERV1 -6480 1640 730 9210 40 2 3 chr6 3093596 3094666 -179320576 + MER11C LTR ERVK 1 1069 -2 31474 101 37 24 chr6 3094666 3095190 -179320052 - MER41D-int LTR ERV1 -7390 730 214 2092 117 34 0 chr6 3095190 3095488 -179319754 + AluSx SINE Alu 1 308 -4 619 170 0 45 chr6 3095547 3095583 -179319659 - FRAM SINE Alu -183 129 93 2846 170 17 68 chr6 3095583 3095950 -179319292 - MER41D LTR ERV1 0 557 230 2158 107 0 7 chr6 3095950 3096241 -179319001 + AluSg SINE Alu 1 289 -21 2846 170 17 68 chr6 3096241 3096460 -179318782 - MER41D LTR ERV1 -327 230 1 619 170 0 45 chr6 3096460 3096535 -179318707 - FRAM SINE Alu -219 93 23 425 207 224 62 chr6 3096623 3096687 -179318555 - Charlie7 DNA MER1_type -586 2026 1974 2192 120 3 3 chr6 3096687 3096996 -179318246 - AluSx SINE Alu -3 309 1 425 207 224 62 chr6 3096996 3097284 -179317958 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 3097735 3097796 -179317446 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 3097919 3097987 -179317255 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 3099066 3099372 -179315870 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 3099612 3099920 -179315322 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 3100264 3100310 -179314932 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 3100827 3101283 -179313959 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 3101298 3101455 -179313787 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 3101657 3101771 -179313471 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 3101771 3103449 -179311793 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 3103719 3103794 -179311448 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 3103794 3104140 -179311102 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 3104156 3104491 -179310751 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 3104526 3104591 -179310651 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 3104591 3104700 -179310542 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 3104763 3105109 -179310133 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 3105109 3105404 -179309838 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 3105404 3105466 -179309776 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 3105531 3106911 -179308331 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 3107016 3107038 -179308204 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 3107093 3107217 -179308025 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 3107300 3107449 -179307793 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 3107506 3107619 -179307623 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 3107624 3108202 -179307040 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 3108202 3108501 -179306741 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 3108517 3108555 -179306687 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 3108555 3108843 -179306399 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 3108843 3108858 -179306384 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 3108858 3108884 -179306358 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 3108884 3108971 -179306271 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 3108991 3109435 -179305807 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 3109832 3110145 -179305097 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 3111659 3111963 -179303279 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 3112557 3112856 -179302386 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 3112865 3113002 -179302240 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 3113003 3113314 -179301928 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 3115324 3116355 -179298887 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 3116362 3116656 -179298586 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 3116656 3116687 -179298555 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 3117080 3117210 -179298032 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 3117210 3117521 -179297721 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 3117521 3117606 -179297636 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 3117969 3118098 -179297144 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 3118677 3118732 -179296510 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 3119658 3119880 -179295362 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 3119880 3120158 -179295084 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 3120158 3120246 -179294996 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 3121017 3121325 -179293917 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 3121904 3122197 -179293045 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 3122396 3122649 -179292593 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 3122649 3122946 -179292296 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 3122946 3123140 -179292102 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 3123155 3123232 -179292010 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 3123383 3123441 -179291801 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 3124115 3124413 -179290829 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 3126833 3127281 -179287961 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 3128009 3128131 -179287111 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 3128511 3128666 -179286576 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 3128894 3129359 -179285883 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 3129432 3129601 -179285641 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 3130097 3130248 -179284994 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 3130722 3130928 -179284314 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 3130933 3131096 -179284146 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 3131163 3131405 -179283837 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 3132537 3132840 -179282402 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 3132905 3133064 -179282178 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 3133347 3134583 -179280659 + L1PA14 LINE L1 4941 6161 0 356 287 17 98 chr6 3134777 3134951 -179280291 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 3135454 3135504 -179279738 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 3135871 3135912 -179279330 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 3135964 3136109 -179279133 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 3136109 3136187 -179279055 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 3136834 3136863 -179278379 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3137493 3137574 -179277668 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3137991 3138051 -179277191 + MER41A LTR ERV1 131 190 -364 2021 85 61 0 chr6 3138052 3138346 -179276896 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3138348 3139289 -179275953 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3139289 3139589 -179275653 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3139589 3139645 -179275597 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3139646 3139685 -179275557 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3139938 3140093 -179275149 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3140110 3140576 -179274666 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3140698 3140994 -179274248 - AluSg SINE Alu -14 296 1 1913 146 7 0 chr6 3141050 3141337 -179273905 + AluSx SINE Alu 1 289 -23 33 0 0 0 chr6 3141337 3141370 -179273872 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3141384 3141452 -179273790 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3141472 3141509 -179273733 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3141512 3141987 -179273255 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3142040 3142129 -179273113 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3142407 3142474 -179272768 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3143277 3144147 -179271095 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3144227 3144249 -179270993 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3145036 3145368 -179269874 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3145368 3145665 -179269577 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3145665 3145939 -179269303 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3146028 3146695 -179268547 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3148048 3148085 -179267157 + MER31A LTR ERV1 1 35 -450 2029 132 21 0 chr6 3148085 3148520 -179266722 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3148520 3148935 -179266307 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3149196 3149260 -179265982 + CT-rich Low_complexity Low_complexity 4 68 0 821 160 23 0 chr6 3149277 3149408 -179265834 - FRAM SINE Alu -38 138 5 361 182 0 26 chr6 3150183 3150260 -179264982 + MER39 LTR ERV1 633 707 0 2205 126 0 13 chr6 3150293 3150594 -179264648 + AluSx SINE Alu 1 297 -15 1226 126 0 11 chr6 3150600 3150783 -179264459 + AluSg/x SINE Alu 132 312 0 2373 102 0 10 chr6 3151569 3151882 -179263360 - AluSx SINE Alu -2 310 1 2434 88 0 0 chr6 3152348 3152644 -179262598 - AluSg SINE Alu -14 296 1 352 302 93 79 chr6 3152644 3152922 -179262320 - L2 LINE L2 -6 3266 2985 2151 137 154 7 chr6 3153147 3153602 -179261640 - MER1A DNA MER1_type -8 525 1 237 316 95 50 chr6 3153610 3153708 -179261534 - L2 LINE L2 -685 2629 2537 2288 113 0 0 chr6 3153708 3154008 -179261234 + AluSg SINE Alu 1 300 -10 237 316 95 50 chr6 3154008 3154266 -179260976 - L2 LINE L2 -777 2537 2257 288 321 0 79 chr6 3156821 3156961 -179258281 + L2 LINE L2 3141 3269 -3 3946 105 27 5 chr6 3156998 3157550 -179257692 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3157810 3157857 -179257385 + AT_rich Low_complexity Low_complexity 1 47 0 2094 122 0 22 chr6 3157910 3158221 -179257021 + AluSx SINE Alu 1 304 -8 496 176 77 6 chr6 3158557 3158683 -179256559 - L1MD3 LINE L1 0 7982 6246 2030 197 35 0 chr6 3158684 3159106 -179256136 - MER54A LTR ERVL 0 901 465 304 223 100 3 chr6 3159213 3159319 -179255923 - L1MD3 LINE L1 -108 7871 7565 2645 56 0 0 chr6 3159479 3159784 -179255458 - AluY SINE Alu -6 305 1 268 146 0 0 chr6 3160200 3160241 -179255001 + MSTB1 LTR MaLR 4 44 -382 895 213 0 6 chr6 3160241 3160415 -179254827 - FRAM SINE Alu -3 173 1 2002 128 80 13 chr6 3160415 3160790 -179254452 + MSTB1 LTR MaLR 33 432 0 1355 215 100 0 chr6 3161229 3161540 -179253702 + MER2 DNA MER2_type 2 343 -1 440 180 9 81 chr6 3161786 3161897 -179253345 - Tigger1 DNA MER2_type -2315 103 1 258 109 254 0 chr6 3161900 3161955 -179253287 + L1M4c LINE L1 1452 1520 -4864 * 4187 175 45 38 chr6 3161950 3162377 -179252865 + L1MB4 LINE L1 4827 5250 -930 2461 74 3 0 chr6 3162377 3162676 -179252566 + AluSp SINE Alu 1 300 -13 4187 175 45 38 chr6 3162676 3163170 -179252072 + L1MB4 LINE L1 5250 5739 -441 591 15 0 0 chr6 3163170 3163238 -179252004 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1465 147 9 0 chr6 3163239 3163463 -179251779 - AluSp SINE Alu 0 313 88 4187 175 45 38 chr6 3163463 3163710 -179251532 + L1MB4 LINE L1 5739 6029 -151 1940 130 51 0 chr6 3163710 3164002 -179251240 - AluSx SINE Alu -5 307 1 4187 175 45 38 chr6 3164002 3164156 -179251086 + L1MB4 LINE L1 6029 6180 0 282 271 97 7 chr6 3165439 3165583 -179249659 - L1MD1 LINE L1 -87 6155 5999 247 86 0 0 chr6 3165660 3165695 -179249547 - tRNA-Gly-GGG tRNA tRNA -39 35 1 305 237 32 11 chr6 3165704 3165797 -179249445 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3165988 3166152 -179249090 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 184 286 20 0 chr6 3166646 3166695 -179248547 - MIR SINE MIR -88 174 125 2311 72 14 3 chr6 3166885 3167178 -179248064 - AluSg SINE Alu -14 296 1 1662 113 4 4 chr6 3167181 3167411 -179247831 - AluSg/x SINE Alu -8 302 73 2363 102 16 3 chr6 3167422 3167727 -179247515 - AluSq SINE Alu -4 309 1 2213 130 0 3 chr6 3168651 3168950 -179246292 - AluSx SINE Alu -13 299 2 288 352 56 28 chr6 3168958 3169137 -179246105 + L2 LINE L2 2718 2901 -413 278 214 0 0 chr6 3169138 3169194 -179246048 - AluJo SINE Alu 0 302 247 1116 163 6 12 chr6 3169195 3169367 -179245875 - AluJo SINE Alu -112 200 30 244 283 85 109 chr6 3170275 3170568 -179244674 - MLT1J LTR MaLR -127 384 99 240 228 0 0 chr6 3171148 3171205 -179244037 - L1MB2 LINE L1 0 6171 6115 1589 84 0 0 chr6 3171246 3171436 -179243806 - AluSx SINE Alu -122 190 1 1890 202 45 23 chr6 3171472 3171971 -179243271 - L1M3 LINE L1 -410 5773 5266 311 265 29 20 chr6 3172160 3172262 -179242980 - MIR SINE MIR -66 142 40 554 191 0 0 chr6 3172929 3173018 -179242224 - FLAM SINE Alu -15 128 40 245 321 24 73 chr6 3173091 3173256 -179241986 + L2 LINE L2 3138 3294 -19 1046 200 5 23 chr6 3173446 3173666 -179241576 - MER20 DNA MER1_type -3 216 1 2316 92 23 3 chr6 3174477 3174782 -179240460 + AluSp SINE Alu 1 311 -2 1203 130 0 6 chr6 3174809 3174971 -179240271 + AluSx SINE Alu 1 161 -151 3953 109 11 11 chr6 3175007 3175623 -179239619 - MER11C LTR ERVK -14 1057 442 5348 175 55 15 chr6 3175734 3177433 -179237809 + L1M3f LINE L1 269 2035 -4065 368 288 137 7 chr6 3177445 3177591 -179237651 + MIR SINE MIR 81 245 -17 2832 16 0 0 chr6 3178179 3178487 -179236755 - AluY SINE Alu -3 308 1 543 274 105 11 chr6 3179962 3180152 -179235090 - MIR SINE MIR -8 254 47 302 289 114 0 chr6 3180964 3181078 -179234164 - L2 LINE L2 -1 3312 3186 2388 103 0 0 chr6 3181381 3181683 -179233559 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3182253 3182315 -179232927 + (CA)n Simple_repeat Simple_repeat 1 62 0 308 289 10 39 chr6 3183093 3183197 -179232045 - L1MB2 LINE L1 -2453 5355 5255 401 241 145 48 chr6 3183228 3183456 -179231786 - L1MB2 LINE L1 -1686 4460 4211 2116 113 7 0 chr6 3183457 3183770 -179231472 + AluSx SINE Alu 1 315 0 618 259 86 100 chr6 3184069 3184489 -179230753 - L1ME4a LINE L1 0 6121 5708 3183 169 7 4 chr6 3185012 3185575 -179229667 - L1PA16 LINE L1 -3 6163 5599 880 174 0 7 chr6 3185711 3185855 -179229387 - FLAM_C SINE Alu 0 143 1 338 264 75 69 chr6 3185859 3186018 -179229224 - L1MB2 LINE L1 -3828 2318 2159 1492 135 39 143 chr6 3186105 3186207 -179229035 + MER7A DNA MER2_type 3 114 -2924 1593 173 60 7 chr6 3186207 3186490 -179228752 - AluJo SINE Alu -12 300 3 1492 135 39 143 chr6 3186490 3186771 -179228471 + MER7A DNA MER2_type 114 344 -2 494 70 0 56 chr6 3186786 3186857 -179228385 + Alu SINE Alu 5 71 -239 379 240 142 49 chr6 3186877 3187081 -179228161 - L1 LINE L1 -1713 4433 4211 2088 75 68 4 chr6 3187082 3187363 -179227879 + AluY SINE Alu 1 299 -12 1812 168 7 21 chr6 3187368 3187659 -179227583 + AluJo SINE Alu 1 287 -25 1688 190 7 7 chr6 3187660 3187965 -179227277 + AluJb SINE Alu 1 305 -7 2376 66 17 0 chr6 3189638 3189925 -179225317 - AluSp SINE Alu -21 292 1 2206 81 3 14 chr6 3190467 3190750 -179224492 + AluSx SINE Alu 22 301 -11 226 206 63 16 chr6 3190753 3190816 -179224426 - MIR SINE MIR -162 100 35 752 310 114 34 chr6 3190896 3191429 -179223813 + MLT1K LTR MaLR 12 587 -1 349 267 44 0 chr6 3191684 3191774 -179223468 + MIR SINE MIR 55 148 -60 376 305 58 0 chr6 3192138 3192292 -179222950 - MIR SINE MIR -87 175 13 311 329 29 7 chr6 3192456 3192596 -179222646 + L1MEd LINE L1 300 442 -5974 4415 165 31 43 chr6 3192750 3193951 -179221291 + pTR5 LTR ERV1 6 2438 0 437 320 59 15 chr6 3194145 3194417 -179220825 + L1MEd LINE L1 854 1137 -5279 1833 171 10 3 chr6 3194513 3194812 -179220430 + AluJo SINE Alu 1 301 -11 333 250 167 36 chr6 3194932 3195100 -179220142 + L1MEd LINE L1 2178 2367 -4059 697 317 59 15 chr6 3195130 3195595 -179219647 + L1MEd LINE L1 2401 2889 -3537 2330 80 7 0 chr6 3195595 3195882 -179219360 + AluSp SINE Alu 1 289 -24 697 317 59 15 chr6 3195882 3195893 -179219349 + L1MEd LINE L1 2889 2898 -3528 248 231 26 39 chr6 3195938 3196016 -179219226 + L1ME3A LINE L1 5482 5558 -608 329 321 120 55 chr6 3196061 3196335 -179218907 + L1ME3A LINE L1 5799 6090 -80 1829 183 0 14 chr6 3196452 3196747 -179218495 + AluJo SINE Alu 1 291 -21 670 88 22 0 chr6 3197117 3197208 -179218034 - AluJb SINE Alu -15 297 205 812 161 0 29 chr6 3198811 3198948 -179216294 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3199037 3199244 -179215998 - MLT1A1 LTR MaLR 0 365 158 1072 150 0 53 chr6 3199244 3199431 -179215811 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3199471 3199898 -179215344 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3199931 3200025 -179215217 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3200025 3200330 -179214912 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3200330 3200382 -179214860 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3200381 3200550 -179214692 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3200553 3200611 -179214631 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3200611 3201062 -179214180 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3201062 3201752 -179213490 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3201767 3202176 -179213066 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3202200 3204030 -179211212 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3203999 3204082 -179211160 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3204082 3204304 -179210938 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3204304 3204708 -179210534 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3204861 3205157 -179210085 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3205157 3205848 -179209394 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3205848 3206145 -179209097 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3206145 3206197 -179209045 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3206232 3206384 -179208858 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3206379 3206733 -179208509 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3206726 3207144 -179208098 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3207145 3207518 -179207724 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3207518 3207809 -179207433 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3207809 3207872 -179207370 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3207903 3208334 -179206908 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3208351 3208652 -179206590 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3208686 3208907 -179206335 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3208912 3208950 -179206292 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3208950 3209068 -179206174 - AluSq/x SINE Alu -193 119 1 1956 219 96 57 chr6 3209129 3209310 -179205932 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3209310 3209622 -179205620 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3209622 3210212 -179205030 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3210233 3210261 -179204981 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3210264 3210531 -179204711 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3212046 3212697 -179202545 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3212747 3213049 -179202193 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3213221 3213514 -179201728 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3215066 3215640 -179199602 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3215644 3215788 -179199454 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3215820 3216127 -179199115 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3216750 3217043 -179198199 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3219009 3219118 -179196124 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3219217 3219511 -179195731 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3219619 3219921 -179195321 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3220032 3220384 -179194858 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3220384 3220741 -179194501 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3221533 3221876 -179193366 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3222419 3222594 -179192648 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3222594 3223676 -179191566 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3223687 3223748 -179191494 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3223751 3225199 -179190043 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3225199 3225543 -179189699 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3225543 3225956 -179189286 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3225956 3226262 -179188980 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3226262 3226441 -179188801 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3226441 3226740 -179188502 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3226740 3227062 -179188180 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3227062 3227757 -179187485 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3227757 3227785 -179187457 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3227785 3228091 -179187151 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3228101 3228243 -179186999 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3230193 3230524 -179184718 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3231213 3231261 -179183981 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3231261 3231556 -179183686 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3231556 3231645 -179183597 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3231652 3231736 -179183506 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3231772 3232913 -179182329 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3232973 3233276 -179181966 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3233284 3233314 -179181928 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3234154 3234188 -179181054 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3234963 3235265 -179179977 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3235677 3235958 -179179284 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3236176 3236263 -179178979 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3236397 3236475 -179178767 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3237459 3237639 -179177603 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3237674 3237789 -179177453 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3237833 3237888 -179177354 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3238330 3238425 -179176817 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3238368 3238471 -179176771 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3238472 3238540 -179176702 + (TA)n Simple_repeat Simple_repeat 2 70 0 512 226 178 0 chr6 3238559 3238705 -179176537 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3239323 3239812 -179175430 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3239896 3240212 -179175030 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3240319 3240517 -179174725 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3240698 3241169 -179174073 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3241317 3241469 -179173773 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3241619 3241931 -179173311 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3241932 3241959 -179173283 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3242760 3242794 -179172448 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3243293 3243410 -179171832 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3243457 3243574 -179171668 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3243915 3243945 -179171297 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3244141 3244309 -179170933 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3244321 3244610 -179170632 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3244638 3244859 -179170383 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3245071 3245130 -179170112 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3245860 3245956 -179169286 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3246811 3247123 -179168119 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3248534 3248646 -179166596 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3248829 3248907 -179166335 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3248973 3249824 -179165418 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3249824 3250124 -179165118 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3250124 3250211 -179165031 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3250856 3250868 -179164374 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3250868 3250963 -179164279 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3250963 3251251 -179163991 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3251375 3251681 -179163561 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3251697 3252223 -179163019 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3252233 3252319 -179162923 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3252323 3252792 -179162450 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3252792 3253070 -179162172 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3253070 3253952 -179161290 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3253952 3254042 -179161200 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3254042 3254402 -179160840 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3254751 3254794 -179160448 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3255628 3255649 -179159593 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3255652 3255993 -179159249 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3258888 3259218 -179156024 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3259218 3259238 -179156004 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3259238 3259430 -179155812 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3259441 3259716 -179155526 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3259716 3260484 -179154758 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3260484 3260775 -179154467 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3260775 3260962 -179154280 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3260986 3261187 -179154055 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3261188 3261496 -179153746 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3261501 3261808 -179153434 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3261858 3262388 -179152854 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3262429 3262478 -179152764 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3262508 3262551 -179152691 + L1MC/D LINE L1 5156 5196 -1001 1395 156 84 11 chr6 3262551 3262837 -179152405 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3262837 3263088 -179152154 + L1MC/D LINE L1 5196 5471 -726 417 314 69 5 chr6 3263116 3263320 -179151922 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3263374 3263716 -179151526 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3263854 3263900 -179151342 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3263900 3264211 -179151031 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3264211 3264765 -179150477 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3264777 3265064 -179150178 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3265229 3265530 -179149712 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3265573 3265630 -179149612 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3265642 3265911 -179149331 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3265946 3266123 -179149119 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3266268 3266406 -179148836 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3266407 3266796 -179148446 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3266796 3267153 -179148089 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3267153 3267243 -179147999 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3267243 3267533 -179147709 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3267533 3267924 -179147318 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3267924 3268204 -179147038 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3268204 3268718 -179146524 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3269190 3269361 -179145881 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3269359 3269491 -179145751 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3269502 3269789 -179145453 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3271606 3271905 -179143337 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3271912 3272225 -179143017 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3272238 3272355 -179142887 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3272836 3273013 -179142229 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3273204 3273285 -179141957 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3273698 3273833 -179141409 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3274263 3274842 -179140400 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3274842 3275145 -179140097 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3275145 3275290 -179139952 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3275741 3275885 -179139357 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3276159 3276363 -179138879 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3277101 3277166 -179138076 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3277166 3277476 -179137766 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3277476 3277524 -179137718 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3278140 3278261 -179136981 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3279327 3279543 -179135699 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3279798 3279819 -179135423 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3280566 3280811 -179134431 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3280983 3281124 -179134118 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3281210 3281504 -179133738 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3282131 3282855 -179132387 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3283221 3283323 -179131919 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3283744 3283868 -179131374 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3284000 3284113 -179131129 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3284676 3284972 -179130270 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3285583 3285716 -179129526 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3285926 3286254 -179128988 - AluSc SINE Alu 0 309 1 2235 68 0 3 chr6 3286655 3286947 -179128295 + AluY SINE Alu 21 311 0 1717 118 45 0 chr6 3287981 3288268 -179126974 - L1MA5A LINE L1 0 6297 5998 417 243 0 0 chr6 3288715 3288789 -179126453 + MER81 DNA DNA 3 76 -38 2075 156 9 0 chr6 3289089 3289422 -179125820 + MER2 DNA MER2_type 10 345 0 2027 115 14 0 chr6 3289687 3289982 -179125260 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3290882 3290905 -179124337 + AT_rich Low_complexity Low_complexity 1 23 0 869 175 0 12 chr6 3291224 3291390 -179123852 - AluSc SINE Alu -11 298 135 1878 81 7 61 chr6 3291393 3291689 -179123553 - AluSx SINE Alu -13 299 20 399 263 101 86 chr6 3292127 3292458 -179122784 - L1ME4a LINE L1 -3 6118 5778 2158 117 0 0 chr6 3292458 3292756 -179122486 - AluSg SINE Alu -12 298 1 399 263 101 86 chr6 3292756 3292842 -179122400 - L1ME4a LINE L1 -343 5778 5695 243 322 166 5 chr6 3292839 3293038 -179122204 - L1ME LINE L1 -405 5765 5535 * 809 188 0 7 chr6 3294165 3294303 -179120939 + AluJb SINE Alu 137 273 -39 2080 110 3 3 chr6 3294443 3294744 -179120498 - AluSp SINE Alu -12 301 1 624 168 0 34 chr6 3295241 3295360 -179119882 + MER58 DNA MER1_type 2305 2419 -1 242 303 122 45 chr6 3295590 3295966 -179119276 + L2 LINE L2 1537 1941 -1373 1798 149 3 19 chr6 3297188 3297503 -179117739 + AluJb SINE Alu 3 312 0 664 281 86 34 chr6 3298426 3298750 -179116492 - L1ME4a LINE L1 -467 5695 5355 1827 143 6 19 chr6 3299066 3299241 -179116001 - AluJb SINE Alu -2 310 139 2404 50 10 0 chr6 3299241 3299539 -179115703 - AluY SINE Alu -10 301 1 1827 143 6 19 chr6 3299539 3299677 -179115565 - AluJb SINE Alu -173 139 1 309 277 53 34 chr6 3299968 3300256 -179114986 - L1MEc LINE L1 -4819 1651 1268 369 345 0 9 chr6 3300277 3300387 -179114855 - L1MEc LINE L1 -5030 1342 1234 339 327 19 31 chr6 3300392 3300554 -179114688 - L1MEc LINE L1 -5398 974 815 268 213 110 39 chr6 3301680 3301807 -179113435 - L2 LINE L2 -1 3271 3136 1971 137 7 10 chr6 3302663 3302955 -179112287 - AluSc SINE Alu -18 291 1 377 301 98 45 chr6 3303640 3303886 -179111356 + MIR SINE MIR 4 262 0 186 265 29 15 chr6 3303957 3304025 -179111217 + MIR SINE MIR 193 261 -1 211 319 118 0 chr6 3304320 3304455 -179110787 - MIR SINE MIR -70 192 42 320 287 10 0 chr6 3304852 3304953 -179110289 - MIR3 SINE MIR -12 196 95 2195 103 0 10 chr6 3306013 3306305 -179108937 - AluSc SINE Alu -20 289 1 199 316 92 26 chr6 3306394 3306546 -179108696 - MIR SINE MIR -44 218 57 2054 107 4 4 chr6 3306838 3307135 -179108107 + AluSq SINE Alu 14 310 0 747 235 39 0 chr6 3307518 3307697 -179107545 - MLT1B LTR MaLR -204 186 1 2437 85 7 0 chr6 3307950 3308255 -179106987 - AluY SINE Alu -4 307 1 2102 132 6 28 chr6 3308261 3308580 -179106662 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3308976 3309128 -179106114 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3309172 3309307 -179105935 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3309333 3310070 -179105172 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3310116 3310594 -179104648 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3310674 3310843 -179104399 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 214 303 30 20 chr6 3310875 3310974 -179104268 + MIR SINE MIR 105 204 -58 1289 186 5 0 chr6 3311005 3311226 -179104016 + AluJb SINE Alu 85 306 -6 814 183 0 20 chr6 3311364 3311517 -179103725 - FRAM SINE Alu -4 172 23 1926 196 21 75 chr6 3311548 3312068 -179103174 - MLT2B1 LTR ERVL -11 509 18 551 278 24 24 chr6 3312941 3313110 -179102132 - MIR SINE MIR 0 262 94 2181 100 14 0 chr6 3313568 3313870 -179101372 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3314807 3314851 -179100391 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1915 164 9 25 chr6 3316686 3317003 -179098239 + AluJo SINE Alu 1 312 0 538 274 0 0 chr6 3320995 3321119 -179094123 + FLAM_A SINE Alu 1 124 -9 553 307 64 86 chr6 3321122 3321154 -179094088 - MER92A LTR ERV1 -14 398 367 2478 79 7 0 chr6 3321154 3321459 -179093783 + AluSp SINE Alu 5 311 -2 553 307 64 86 chr6 3321459 3321833 -179093409 - MER92A LTR ERV1 -45 367 1 3210 137 6 4 chr6 3322980 3323493 -179091749 - MER75 DNA T2_type 0 514 1 707 360 45 11 chr6 3324263 3324549 -179090693 + MER115 DNA AcHobo 89 384 -309 812 263 105 25 chr6 3324549 3324834 -179090408 + MER77 LTR ERV1 290 597 -8 1369 267 68 32 chr6 3324918 3325390 -179089852 + MER77-int LTR ERV1 2 490 -3701 * 1520 241 23 66 chr6 3325380 3325554 -179089688 + MER77-int LTR ERV1 1218 1398 -2793 2395 116 0 0 chr6 3325554 3325864 -179089378 - AluSx SINE Alu -2 310 1 1520 241 23 66 chr6 3325864 3326128 -179089114 + MER77-int LTR ERV1 1398 1637 -2554 5282 231 50 28 chr6 3326207 3327540 -179087702 + MER77-int LTR ERV1 1631 2993 -1198 641 96 0 0 chr6 3327857 3327951 -179087291 - AluSx SINE Alu -10 302 209 2222 95 7 0 chr6 3328559 3328843 -179086399 - AluSx SINE Alu -22 290 5 4375 170 49 14 chr6 3329310 3330144 -179085098 - MER21B LTR ERV1 0 863 1 1716 129 16 150 chr6 3330575 3331063 -179084179 + MER4A LTR ERV1 1 423 -241 549 255 13 20 chr6 3331075 3331224 -179084018 + MER4C LTR ERV1 276 423 -42 296 250 13 26 chr6 3331221 3331297 -179083945 + MER4C LTR ERV1 389 463 -2 * 726 103 0 8 chr6 3331381 3331498 -179083744 - AluSp/q SINE Alu 0 313 198 1578 97 141 7 chr6 3331498 3331767 -179083475 + LTR7 LTR ERV1 9 313 -137 15701 160 16 32 chr6 3331767 3335036 -179080206 + HERVH LTR ERV1 982 4232 -2297 4661 132 173 23 chr6 3335044 3336409 -179078833 + pTR5 LTR ERV1 740 2438 0 6295 106 9 2 chr6 3336413 3337322 -179077920 + HERVH LTR ERV1 4235 5149 -2564 1352 146 0 0 chr6 3337323 3337543 -179077699 + HERVH LTR ERV1 5600 5819 -1894 * 2146 87 82 14 chr6 3337541 3337908 -179077334 + HERVH LTR ERV1 7322 7713 0 2621 83 95 5 chr6 3337908 3338319 -179076923 + LTR7 LTR ERV1 1 448 -2 1663 101 5 0 chr6 3338321 3338529 -179076713 - AluSx SINE Alu -103 209 1 953 213 0 0 chr6 3338534 3338703 -179076539 - FRAM SINE Alu -7 169 1 2492 90 0 0 chr6 3338844 3339154 -179076088 + AluY SINE Alu 1 310 -1 245 297 14 0 chr6 3339176 3339250 -179075992 - L3 LINE CR1 -75 1502 1428 485 271 39 54 chr6 3339278 3339481 -179075761 - MIR SINE MIR -50 212 13 254 164 36 36 chr6 3339482 3339537 -179075705 + MLT1E3 LTR MaLR 1 55 -569 3011 125 57 13 chr6 3339537 3340126 -179075116 - MER4B LTR ERV1 0 779 1 1354 243 54 60 chr6 3340126 3340648 -179074594 + MLT1E3 LTR MaLR 52 652 -2 377 309 62 16 chr6 3340674 3340917 -179074325 - LTR16C LTR ERVL -5 486 233 2282 123 0 0 chr6 3342209 3342517 -179072725 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3342789 3342832 -179072410 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2018 67 0 31 chr6 3342832 3343087 -179072155 - AluY SINE Alu -26 285 39 2385 59 0 0 chr6 3343628 3343900 -179071342 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3345359 3345404 -179069838 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3346341 3346379 -179068863 + (TG)n Simple_repeat Simple_repeat 2 39 0 742 241 14 14 chr6 3346489 3346696 -179068546 + MER33 DNA MER1_type 5 211 -113 204 282 167 0 chr6 3346787 3346865 -179068377 - MIR SINE MIR -99 163 73 2507 62 0 3 chr6 3347151 3347455 -179067787 + AluY SINE Alu 1 303 -8 23 0 0 0 chr6 3349375 3349398 -179065844 + AT_rich Low_complexity Low_complexity 1 23 0 1460 141 38 0 chr6 3349568 3349781 -179065461 - AluSg/x SINE Alu -14 298 78 942 248 56 0 chr6 3350274 3350508 -179064734 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3350524 3350581 -179064661 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3351086 3351109 -179064133 + GC_rich Low_complexity Low_complexity 1 23 0 327 253 84 65 chr6 3451307 3451461 -178963781 - L1ME4a LINE L1 -38 6083 5927 270 262 64 78 chr6 3452391 3452532 -178962710 + L2 LINE L2 3099 3237 -76 451 209 147 63 chr6 3454450 3454641 -178960601 + MER112 DNA MER1_type 53 259 -1 1091 203 48 73 chr6 3454646 3454976 -178960266 + MER58B DNA MER1_type 4 325 -16 585 199 0 0 chr6 3456598 3456769 -178958473 + (CA)n Simple_repeat Simple_repeat 2 172 0 323 296 0 0 chr6 3456787 3456885 -178958357 + (CA)n Simple_repeat Simple_repeat 1 98 0 238 125 0 47 chr6 3460416 3460480 -178954762 + (AGGGGG)n Simple_repeat Simple_repeat 3 63 0 208 247 43 54 chr6 3461263 3461356 -178953886 - MIR SINE MIR -46 216 125 252 0 0 0 chr6 3461539 3461567 -178953675 + (A)n Simple_repeat Simple_repeat 1 28 0 184 274 55 27 chr6 3462069 3462142 -178953100 + L2 LINE L2 3149 3223 -49 3494 181 9 12 chr6 3462564 3463229 -178952013 + L1MB1 LINE L1 5505 6167 -1 2295 198 8 25 chr6 3463882 3464393 -178950849 + L1MB3 LINE L1 5354 5855 -328 1731 138 41 3 chr6 3464454 3464773 -178950469 + L1MB3 LINE L1 5853 6183 0 227 224 66 40 chr6 3466491 3466567 -178948675 - MER103 DNA DNA -33 133 56 2360 93 6 3 chr6 3466604 3466915 -178948327 + AluSx SINE Alu 1 312 0 273 357 27 32 chr6 3468719 3468904 -178946338 - MIR SINE MIR -46 216 33 2346 109 0 10 chr6 3469519 3469832 -178945410 + AluSx SINE Alu 1 310 -2 2487 86 0 13 chr6 3470531 3470844 -178944398 + AluSg SINE Alu 1 309 -1 293 277 161 0 chr6 3470891 3471021 -178944221 + MIR SINE MIR 80 230 -32 287 248 109 20 chr6 3472062 3472163 -178943079 - MIR SINE MIR -87 175 66 2399 92 0 0 chr6 3473891 3474186 -178941056 + AluSx SINE Alu 1 295 -17 189 182 0 0 chr6 3475604 3475637 -178939605 - L2 LINE L2 -9 3304 3272 1143 219 98 19 chr6 3475706 3476021 -178939221 - MER58B DNA MER1_type -1 340 1 412 338 63 0 chr6 3476029 3476171 -178939071 + MIR SINE MIR 60 210 -52 701 251 72 43 chr6 3476226 3476297 -178938945 - MIR SINE MIR 0 262 195 729 174 39 45 chr6 3476297 3476475 -178938767 - MER104 DNA MER2_type -3 177 1 701 251 72 43 chr6 3476475 3476638 -178938604 - MIR SINE MIR -67 195 21 2891 180 39 2 chr6 3477429 3477969 -178937273 + MER68 LTR ERV1 3 562 0 431 136 19 29 chr6 3478083 3478186 -178937056 + GA-rich Low_complexity Low_complexity 2 103 0 182 293 171 37 chr6 3478228 3478310 -178936932 - L2 LINE L2 -42 3230 3138 915 227 96 9 chr6 3478350 3478579 -178936663 - MIR SINE MIR -11 251 3 203 325 103 88 chr6 3481118 3481438 -178933804 - L2 LINE L2 0 3272 2948 1240 192 42 0 chr6 3481539 3481753 -178933489 + MER58A DNA MER1_type 1 223 -1 2647 64 0 3 chr6 3483128 3483441 -178931801 - AluSq SINE Alu -1 312 1 192 179 0 0 chr6 3484431 3484470 -178930772 + (TG)n Simple_repeat Simple_repeat 1 39 0 807 307 65 3 chr6 3485180 3485489 -178929753 - MLT1I LTR MaLR 0 409 82 490 301 47 28 chr6 3486039 3486252 -178928990 + MIR SINE MIR 20 236 -26 1146 215 42 0 chr6 3487074 3487288 -178927954 + MER58A DNA MER1_type 1 223 -1 365 271 126 37 chr6 3487552 3487746 -178927496 + L1ME3A LINE L1 5754 5961 -204 286 355 89 23 chr6 3488214 3488428 -178926814 - L2 LINE L2 -404 2910 2683 2876 161 38 21 chr6 3489203 3489713 -178925529 + L1MB3 LINE L1 5613 6134 -49 1996 156 0 10 chr6 3489713 3490014 -178925228 + AluSx SINE Alu 1 298 -14 2876 161 38 21 chr6 3490014 3490061 -178925181 + L1MB3 LINE L1 6134 6179 -4 203 319 43 28 chr6 3491106 3491247 -178923995 - MIR3 SINE MIR -33 175 33 1773 231 104 29 chr6 3491634 3492193 -178923049 + L1MD3 LINE L1 7374 7974 -21 241 226 0 0 chr6 3492762 3492815 -178922427 + (AAATG)n Simple_repeat Simple_repeat 4 56 0 3144 158 19 73 chr6 3492853 3493471 -178921771 + L1MB3 LINE L1 5467 6038 -145 2342 108 0 0 chr6 3493471 3493778 -178921464 + AluSq SINE Alu 4 310 -3 3144 158 19 73 chr6 3493778 3493914 -178921328 + L1MB3 LINE L1 6038 6180 -3 410 353 64 5 chr6 3495707 3495894 -178919348 - L3 LINE CR1 -977 600 403 233 242 81 0 chr6 3495885 3495947 -178919295 + MIR3 SINE MIR 132 198 -10 * 515 340 68 42 chr6 3496030 3496415 -178918827 - L2 LINE L2 0 3313 2919 692 274 135 0 chr6 3496522 3496752 -178918490 + MLT1J LTR MaLR 1 261 -250 264 221 139 25 chr6 3496788 3496910 -178918332 + MLT1J LTR MaLR 376 511 0 1642 281 166 16 chr6 3496921 3497782 -178917460 - L2 LINE L2 -581 2733 1744 608 271 47 0 chr6 3497821 3498013 -178917229 - MER3 DNA MER1_type -8 201 1 265 330 0 10 chr6 3499105 3499208 -178916034 + L2 LINE L2 2686 2787 -527 3422 132 93 63 chr6 3500630 3500763 -178914479 + LTR1 LTR ERV1 13 140 -645 2244 95 41 0 chr6 3500763 3501058 -178914184 + AluSc SINE Alu 1 307 -2 3422 132 93 63 chr6 3501058 3501674 -178913568 + LTR1 LTR ERV1 140 785 0 328 246 228 0 chr6 3501678 3501792 -178913450 + MIR SINE MIR 82 221 -41 284 263 19 113 chr6 3501975 3502135 -178913107 + MIR SINE MIR 117 261 -1 189 0 0 0 chr6 3502937 3502958 -178912284 + (T)n Simple_repeat Simple_repeat 1 21 0 1841 166 3 16 chr6 3503238 3503545 -178911697 + AluJo SINE Alu 9 311 -1 2390 85 3 0 chr6 3504367 3504660 -178910582 - AluSq SINE Alu -19 294 1 282 286 77 16 chr6 3505041 3505167 -178910075 - MIR SINE MIR -46 162 34 297 107 58 223 chr6 3505485 3505542 -178909700 + L1MB4 LINE L1 6080 6108 -72 2319 111 13 0 chr6 3505542 3505848 -178909394 + AluSx SINE Alu 1 310 -2 297 107 58 223 chr6 3505848 3505911 -178909331 + L1MB4 LINE L1 6108 6180 0 198 311 67 25 chr6 3506312 3506431 -178908811 + L2 LINE L2 2256 2379 -935 211 351 84 15 chr6 3506627 3506829 -178908413 + L2 LINE L2 2555 2770 -544 264 393 27 0 chr6 3508365 3508477 -178906765 - MIR SINE MIR -61 147 33 2199 99 7 17 chr6 3509461 3509763 -178905479 + AluSg SINE Alu 1 299 -11 23 33 0 0 chr6 3510098 3510128 -178905114 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 3510686 3510707 -178904535 + AT_rich Low_complexity Low_complexity 1 21 0 333 118 0 0 chr6 3511009 3511060 -178904182 + (TG)n Simple_repeat Simple_repeat 2 52 0 1125 181 59 0 chr6 3512456 3512660 -178902582 + MER58A DNA MER1_type 1 216 -8 324 329 39 7 chr6 3513007 3513162 -178902080 - MER117 DNA MER1_type -37 160 1 191 181 0 169 chr6 3515001 3515084 -178900158 - MIR3 SINE MIR -48 160 92 863 189 123 13 chr6 3515892 3516120 -178899122 + L1MB8 LINE L1 5926 6178 0 180 231 96 0 chr6 3516486 3516538 -178898704 + MIR SINE MIR 124 180 -82 349 289 72 62 chr6 3516767 3516961 -178898281 + MIR SINE MIR 23 218 -44 1842 213 82 25 chr6 3517082 3517560 -178897682 + MLT1D LTR MaLR 1 505 0 464 290 0 7 chr6 3517560 3517705 -178897537 - LTR33 LTR ERVL -11 510 367 207 0 0 0 chr6 3519204 3519227 -178896015 + (A)n Simple_repeat Simple_repeat 1 23 0 641 266 74 29 chr6 3519396 3519640 -178895602 + MIR SINE MIR 8 262 0 648 239 31 6 chr6 3522019 3522178 -178893064 + MER5A DNA MER1_type 1 163 -26 181 385 0 51 chr6 3523449 3523527 -178891715 - L3b LINE CR1 -7 1576 1503 198 280 0 32 chr6 3523689 3523782 -178891460 + L2 LINE L2 2487 2576 -738 256 167 26 64 chr6 3524238 3524316 -178890926 + LTR33A LTR ERVL 440 514 -9 212 287 111 37 chr6 3524374 3524482 -178890760 + L2 LINE L2 2585 2700 -614 2028 156 16 0 chr6 3525305 3525612 -178889630 + AluSx SINE Alu 1 312 0 562 272 32 10 chr6 3525697 3525979 -178889263 + L1ME4a LINE L1 5541 5870 -251 283 272 41 35 chr6 3526020 3526189 -178889053 + L1ME4a LINE L1 5952 6121 0 209 146 21 0 chr6 3528062 3528110 -178887132 + GA-rich Low_complexity Low_complexity 2 50 0 1149 230 0 9 chr6 3529149 3529375 -178885867 + MER58A DNA MER1_type 1 224 0 191 286 0 0 chr6 3529375 3529424 -178885818 + L2 LINE L2 3189 3237 -76 31 26 0 0 chr6 3529577 3529615 -178885627 + AT_rich Low_complexity Low_complexity 1 38 0 2604 60 7 0 chr6 3529765 3530066 -178885176 - AluY SINE Alu -8 303 1 403 301 74 25 chr6 3530134 3530297 -178884945 - MIR SINE MIR -6 256 86 283 290 75 37 chr6 3530670 3530777 -178884465 - MIR SINE MIR -56 152 42 186 143 0 0 chr6 3531138 3531173 -178884069 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 321 354 82 10 chr6 3531541 3531747 -178883495 + MIR SINE MIR 16 236 -26 23 0 0 0 chr6 3533155 3533178 -178882064 + AT_rich Low_complexity Low_complexity 1 23 0 429 218 0 0 chr6 3533356 3533443 -178881799 + MER103 DNA DNA 35 121 -45 2878 133 58 0 chr6 3534046 3534542 -178880700 + L1MB3 LINE L1 5649 6173 -10 2487 99 3 0 chr6 3535267 3535579 -178879663 + AluSp SINE Alu 1 313 0 304 314 122 17 chr6 3536519 3536691 -178878551 - MIR SINE MIR -59 203 14 1001 269 134 5 chr6 3538090 3538507 -178876735 + L1ME2 LINE L1 5694 6164 0 2176 94 7 0 chr6 3538515 3538791 -178876451 + AluSx SINE Alu 1 278 -34 216 0 0 0 chr6 3538791 3538815 -178876427 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2205 101 17 0 chr6 3538816 3539104 -178876138 + AluSg SINE Alu 1 293 -17 464 299 0 22 chr6 3539756 3539893 -178875349 + C-rich Low_complexity Low_complexity 3 136 0 1698 158 80 19 chr6 3540176 3540537 -178874705 + MLT1B LTR MaLR 8 390 0 2043 102 62 0 chr6 3540641 3540916 -178874326 - AluSq SINE Alu -19 294 3 240 233 0 17 chr6 3541208 3541268 -178873974 + L2 LINE L2 3241 3299 -14 2355 78 0 38 chr6 3541878 3542198 -178873044 + AluY SINE Alu 1 308 -3 1380 103 0 0 chr6 3542228 3542402 -178872840 - AluSq SINE Alu -11 302 129 870 145 18 84 chr6 3543562 3543789 -178871453 - MER20 DNA MER1_type 0 219 8 225 114 139 101 chr6 3543793 3543872 -178871370 - MER5B DNA MER1_type -76 102 21 196 302 19 0 chr6 3544485 3544538 -178870704 - L2 LINE L2 -541 2773 2720 1852 157 42 37 chr6 3544730 3544908 -178870334 + MLT1B LTR MaLR 1 177 -213 2474 76 0 3 chr6 3544908 3545209 -178870033 + AluSg SINE Alu 1 300 -10 1852 157 42 37 chr6 3545209 3545412 -178869830 + MLT1B LTR MaLR 177 384 -6 2289 192 51 2 chr6 3546457 3546926 -178868316 + L1MB3 LINE L1 5690 6181 -2 382 179 0 0 chr6 3547710 3547777 -178867465 + MER45 DNA AcHobo 1515 1581 0 190 293 146 24 chr6 3549542 3549665 -178865577 - MIR SINE MIR -79 183 46 2310 90 3 7 chr6 3549683 3549982 -178865260 - AluSx SINE Alu -14 298 1 211 264 80 55 chr6 3550135 3550336 -178864906 - L2 LINE L2 -231 3041 2836 199 258 81 97 chr6 3550374 3550498 -178864744 - L2 LINE L2 -555 2759 2638 287 287 174 0 chr6 3550724 3550839 -178864403 + MIR3 SINE MIR 30 164 -44 282 290 23 76 chr6 3551497 3551628 -178863614 + L2 LINE L2 2678 2801 -513 467 301 33 99 chr6 3551668 3552030 -178863212 + L2 LINE L2 2910 3247 -25 2509 88 0 0 chr6 3552062 3552370 -178862872 - AluY SINE Alu -3 308 1 2454 79 0 13 chr6 3552380 3552685 -178862557 - AluSx SINE Alu -11 301 1 822 202 52 31 chr6 3552727 3552920 -178862322 + MER63A DNA MER1_type 12 208 -2 2345 80 0 6 chr6 3552965 3553276 -178861966 - AluY SINE Alu -2 309 1 249 57 0 0 chr6 3553368 3553403 -178861839 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 363 314 84 58 chr6 3553670 3553896 -178861346 + L1MC4a LINE L1 5007 5238 -908 1050 282 96 23 chr6 3553917 3554503 -178860739 + L1MC4a LINE L1 5266 5824 -297 2471 74 0 0 chr6 3554790 3555087 -178860155 - AluSg SINE Alu -13 297 1 1967 122 3 0 chr6 3555692 3555979 -178859263 - AluSx SINE Alu -24 288 1 224 0 65 0 chr6 3556021 3556052 -178859190 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1629 165 25 50 chr6 3556292 3556714 -178858528 + Tigger5 DNA MER2_type 1 2323 0 1787 136 0 26 chr6 3556803 3557113 -178858129 + AluJo SINE Alu 11 312 0 300 338 214 33 chr6 3557375 3557988 -178857254 + L3 LINE CR1 852 1575 -2 43 97 0 0 chr6 3560897 3561031 -178854211 + GC_rich Low_complexity Low_complexity 1 134 0 27 49 0 0 chr6 3561222 3561263 -178853979 + GC_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr6 3561384 3561410 -178853832 + GC_rich Low_complexity Low_complexity 1 26 0 285 29 0 0 chr6 3561574 3561608 -178853634 + (TCC)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr6 3561707 3561729 -178853513 + GC_rich Low_complexity Low_complexity 1 22 0 303 241 13 13 chr6 3563122 3563201 -178852041 + MIR SINE MIR 184 262 0 556 234 101 32 chr6 3564171 3564359 -178850883 + L2 LINE L2 3113 3313 0 287 307 128 44 chr6 3564634 3564885 -178850357 + MER102b DNA MER1_type 67 338 -3 2136 82 21 7 chr6 3565884 3566175 -178849067 + AluSc SINE Alu 1 295 -14 270 0 0 0 chr6 3566184 3566214 -178849028 + (CA)n Simple_repeat Simple_repeat 2 31 0 4063 136 120 104 chr6 3566973 3567391 -178847851 + L1MC3 LINE L1 6685 7095 -690 245 273 39 0 chr6 3567391 3567468 -178847774 + MLT1F1 LTR MaLR 35 114 -453 4063 136 120 104 chr6 3567468 3568057 -178847185 + L1MC3 LINE L1 7095 7785 0 1901 155 8 137 chr6 3568106 3568270 -178846972 + MSTB LTR MaLR 1 184 -242 2390 57 0 0 chr6 3568270 3568569 -178846673 + AluY SINE Alu 1 299 -12 1901 155 8 137 chr6 3568569 3568893 -178846349 + MSTB LTR MaLR 184 426 0 2123 105 3 0 chr6 3568936 3569230 -178846012 - AluSp SINE Alu -16 297 3 1921 86 30 50 chr6 3569322 3569625 -178845617 - AluSp SINE Alu -16 297 1 252 264 153 0 chr6 3570166 3570238 -178845004 + L2 LINE L2 3230 3312 -1 186 43 0 0 chr6 3570453 3570476 -178844766 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2142 97 3 0 chr6 3570482 3570770 -178844472 - AluSp SINE Alu -23 290 2 1957 239 79 5 chr6 3570827 3571371 -178843871 - L1MB8 LINE L1 -6 6172 5588 328 262 10 19 chr6 3571700 3571803 -178843439 - MLT1K LTR MaLR -8 580 479 2168 96 3 0 chr6 3572078 3572371 -178842871 + AluSp SINE Alu 2 295 -18 492 279 0 64 chr6 3572572 3572744 -178842498 + MIR SINE MIR 37 197 -65 310 254 62 102 chr6 3573341 3573422 -178841820 - MIR SINE MIR -55 207 124 1065 193 88 99 chr6 3573422 3573877 -178841365 + LTR7 LTR ERV1 1 450 0 310 254 62 102 chr6 3573877 3574010 -178841232 - MIR SINE MIR -138 124 1 609 279 96 21 chr6 3574897 3575177 -178840065 - MARNA DNA Mariner -111 475 175 2366 87 0 0 chr6 3575555 3575867 -178839375 - AluSx SINE Alu 0 312 1 352 287 38 96 chr6 3576528 3576655 -178838587 - MIR3 SINE MIR -8 200 88 2217 108 7 0 chr6 3576655 3576961 -178838281 + AluSp SINE Alu 1 308 -5 352 287 38 96 chr6 3576961 3577042 -178838200 - MIR3 SINE MIR -120 88 4 342 0 0 0 chr6 3577797 3577835 -178837407 + (CA)n Simple_repeat Simple_repeat 2 39 0 2075 89 4 0 chr6 3578045 3578379 -178836863 - AluY SINE Alu 0 335 1 2169 105 7 0 chr6 3578728 3579034 -178836208 + AluSq SINE Alu 1 308 -5 2203 101 0 0 chr6 3579207 3579504 -178835738 - AluY SINE Alu -14 297 1 24 32 0 0 chr6 3579963 3579994 -178835248 + AT_rich Low_complexity Low_complexity 1 31 0 197 306 32 0 chr6 3580128 3580190 -178835052 - L2 LINE L2 -1 3271 3208 332 212 288 30 chr6 3580452 3580584 -178834658 - MER5A DNA MER1_type -15 174 9 1803 152 27 3 chr6 3580791 3581088 -178834154 - AluJb SINE Alu -8 304 1 403 316 85 59 chr6 3581188 3581460 -178833782 - L1MC4a LINE L1 -1822 5986 5708 257 303 55 0 chr6 3581460 3581569 -178833673 - L1MC4a LINE L1 -856 5290 5176 209 241 316 0 chr6 3581804 3581883 -178833359 + MER5A DNA MER1_type 71 174 -15 1869 143 0 51 chr6 3581918 3582232 -178833010 - MER1B DNA MER1_type -13 326 29 491 293 103 33 chr6 3582942 3583184 -178832058 + L2 LINE L2 549 807 -2507 1271 269 16 22 chr6 3583184 3583555 -178831687 - MLT1A2 LTR MaLR -5 369 1 2330 182 25 0 chr6 3583555 3583962 -178831280 - MLT1A2-int LTR MaLR 0 1735 1319 1765 173 8 37 chr6 3583983 3584049 -178831193 - MLT1A2-int LTR MaLR -770 601 535 1957 95 0 18 chr6 3584049 3584357 -178830885 - AluSg SINE Alu 0 303 1 1765 173 8 37 chr6 3584357 3584641 -178830601 - MLT1A2-int LTR MaLR -836 535 260 675 126 36 0 chr6 3584632 3584743 -178830499 - MLT1A2-int LTR MaLR -1256 115 1 * 1131 182 70 134 chr6 3584743 3585052 -178830190 - MLT1B LTR MaLR 0 390 113 2169 115 0 3 chr6 3585052 3585357 -178829885 - AluSx SINE Alu -8 304 1 1131 182 70 134 chr6 3585357 3585464 -178829778 - MLT1B LTR MaLR -277 113 1 315 246 49 0 chr6 3586030 3586152 -178829090 + LTR33A LTR ERVL 260 394 -127 850 244 44 44 chr6 3586180 3586454 -178828788 - MER21B LTR ERV1 -125 738 465 1195 273 31 41 chr6 3586508 3586896 -178828346 - MER21B LTR ERV1 -382 481 98 479 217 16 50 chr6 3586869 3587017 -178828225 - MER21B LTR ERV1 -408 197 16 * 298 363 74 7 chr6 3587191 3587326 -178827916 + L2 LINE L2 3125 3268 -4 183 280 80 0 chr6 3587360 3587410 -178827832 - L2 LINE L2 -19 3294 3241 401 259 106 55 chr6 3587767 3587941 -178827301 + MIR SINE MIR 20 191 -62 252 330 64 0 chr6 3588937 3589031 -178826211 - L2 LINE L2 -34 3279 3180 2201 102 0 0 chr6 3589862 3590156 -178825086 - AluSx SINE Alu -18 294 1 381 276 67 8 chr6 3590572 3590706 -178824536 + MER5A DNA MER1_type 11 152 -37 3393 144 29 10 chr6 3590706 3591295 -178823947 + L1MB3 LINE L1 5500 6099 -84 260 88 0 0 chr6 3591386 3591420 -178823822 + Alu SINE Alu 252 285 -16 241 264 28 0 chr6 3591884 3591956 -178823286 + L2 LINE L2 2866 2939 -333 292 267 22 11 chr6 3592853 3592943 -178822299 - L2 LINE L2 -6 3266 3176 196 328 115 33 chr6 3592962 3593084 -178822158 - L2 LINE L2 -37 3235 3104 2108 116 0 0 chr6 3593187 3593480 -178821762 - AluSx SINE Alu -19 293 1 22 35 0 0 chr6 3593482 3593511 -178821731 + AT_rich Low_complexity Low_complexity 1 29 0 344 191 296 0 chr6 3594123 3594238 -178821004 + MER5B DNA MER1_type 30 178 0 368 171 29 86 chr6 3594355 3594460 -178820782 + MER5A DNA MER1_type 14 112 -77 1446 201 97 41 chr6 3594536 3594733 -178820509 + MLT1C LTR MaLR 1 185 -282 2068 150 18 48 chr6 3594733 3594812 -178820430 - L1MA5A LINE L1 -6 6291 6211 3123 121 77 16 chr6 3594812 3595309 -178819933 + MER1A DNA MER1_type 1 527 0 2068 150 18 48 chr6 3595309 3595629 -178819613 - L1MA5A LINE L1 -86 6211 5904 1446 201 97 41 chr6 3595629 3595873 -178819369 + MLT1C LTR MaLR 185 467 0 1434 253 107 15 chr6 3596596 3597122 -178818120 - MER90 LTR ERV1 0 575 2 403 220 53 0 chr6 3597436 3597521 -178817721 - MLT1B LTR MaLR -195 195 115 1839 148 25 0 chr6 3597521 3597805 -178817437 - AluSx SINE Alu -21 291 1 403 220 53 0 chr6 3597805 3597826 -178817416 - MLT1B LTR MaLR -275 115 97 2166 114 0 19 chr6 3598280 3598595 -178816647 + AluSg SINE Alu 1 309 -1 285 333 101 0 chr6 3598786 3598915 -178816327 + MIR SINE MIR 51 192 -70 510 260 31 0 chr6 3599139 3599266 -178815976 - MIR3 SINE MIR -31 177 47 689 253 78 66 chr6 3599357 3599614 -178815628 - MIR SINE MIR -1 261 2 639 148 191 37 chr6 3599632 3599683 -178815559 + MER5A DNA MER1_type 1 43 -146 1462 179 14 133 chr6 3599683 3600047 -178815195 + MLT1A1 LTR MaLR 1 312 -53 2079 111 7 0 chr6 3600047 3600344 -178814898 + AluSp SINE Alu 1 299 -14 1462 179 14 133 chr6 3600344 3600393 -178814849 + MLT1A1 LTR MaLR 312 365 0 639 148 191 37 chr6 3600393 3600503 -178814739 + MER5A DNA MER1_type 43 187 -2 507 121 38 30 chr6 3601013 3601145 -178814097 + CT-rich Low_complexity Low_complexity 4 136 0 2264 86 0 13 chr6 3601955 3602269 -178812973 + AluY SINE Alu 1 310 -1 1052 198 58 133 chr6 3602477 3602877 -178812365 + MLT1A2 LTR MaLR 5 374 0 307 115 19 19 chr6 3602877 3602929 -178812313 + MLT1A2-int LTR MaLR 5 56 -1315 1735 180 62 36 chr6 3603150 3603196 -178812046 - MER74A LTR ERVL -40 518 475 1930 122 0 21 chr6 3603196 3603505 -178811737 + AluSp SINE Alu 1 303 0 1735 180 62 36 chr6 3603505 3603841 -178811401 - MER74A LTR ERVL -83 475 125 311 255 38 38 chr6 3604381 3604487 -178810755 - MIR SINE MIR -55 207 102 1608 135 4 0 chr6 3604858 3605087 -178810155 + MER30 DNA MER1_type 1 230 0 2498 43 0 0 chr6 3605612 3605914 -178809328 - AluY SINE Alu -9 302 1 249 298 74 70 chr6 3606460 3606718 -178808524 - L1M4c LINE L1 -4803 1581 1323 195 129 0 0 chr6 3606719 3606750 -178808492 + (GAA)n Simple_repeat Simple_repeat 2 32 0 393 315 27 0 chr6 3606793 3606904 -178808338 + MIR SINE MIR 78 191 -71 556 250 56 35 chr6 3607196 3607428 -178807814 + HAL1 LINE L1 1314 1550 -957 798 244 168 74 chr6 3607477 3608150 -178807092 + HAL1 LINE L1 1648 2383 -124 315 186 0 17 chr6 3608783 3608842 -178806400 - MLT1I LTR MaLR -42 367 310 226 250 36 0 chr6 3608982 3609038 -178806204 + MLT1I LTR MaLR 73 130 -279 255 253 137 11 chr6 3609039 3609134 -178806108 - MLT1I LTR MaLR -272 137 31 1237 110 74 258 chr6 3609139 3609693 -178805549 - LTR12 LTR ERV1 -208 506 55 970 145 36 67 chr6 3609695 3609888 -178805354 - LTR12 LTR ERV1 -527 187 1 356 295 104 23 chr6 3610785 3610958 -178804284 + MIR3 SINE MIR 5 191 -17 299 259 27 27 chr6 3610985 3611097 -178804145 + GA-rich Low_complexity Low_complexity 2 113 0 273 314 118 0 chr6 3611337 3611490 -178803752 - MIR SINE MIR 0 262 92 1074 281 102 14 chr6 3611552 3611994 -178803248 - L1MC/D LINE L1 -2011 5797 5317 305 333 51 39 chr6 3612009 3612243 -178802999 - L1MC/D LINE L1 -843 5303 5067 237 263 66 136 chr6 3612246 3612489 -178802753 - LTR33 LTR ERVL -2 519 294 302 301 74 66 chr6 3612821 3612924 -178802318 - L1MC/D LINE L1 -1211 4935 4834 2082 109 10 0 chr6 3612924 3613217 -178802025 - AluSg SINE Alu -14 296 1 302 301 74 66 chr6 3613217 3613505 -178801737 - L1MC/D LINE L1 -1312 4834 4541 2138 235 49 42 chr6 3613521 3613615 -178801627 + L1MC4 LINE L1 7316 7408 -634 1231 218 45 77 chr6 3613615 3613992 -178801250 + MLT1A1 LTR MaLR 1 365 0 2138 235 49 42 chr6 3613992 3614618 -178800624 + L1MC4 LINE L1 7408 8030 -12 346 248 85 31 chr6 3615105 3615234 -178800008 - MIR SINE MIR -7 255 120 270 0 0 0 chr6 3615814 3615844 -178799398 + (TG)n Simple_repeat Simple_repeat 1 30 0 411 73 0 0 chr6 3615844 3615899 -178799343 + (GA)n Simple_repeat Simple_repeat 2 56 0 2368 126 91 2 chr6 3616122 3616518 -178798724 + MSTB1 LTR MaLR 2 432 0 491 318 97 24 chr6 3616538 3616902 -178798340 + LTR16A1 LTR ERVL 73 442 -15 384 274 60 8 chr6 3618158 3618275 -178796967 + MIR SINE MIR 139 261 -1 205 167 44 44 chr6 3618337 3618427 -178796815 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 670 147 0 0 chr6 3618447 3618542 -178796700 - AluJ/FLAM SINE Alu -216 96 2 21 0 0 0 chr6 3618543 3618564 -178796678 + AT_rich Low_complexity Low_complexity 1 21 0 366 23 0 0 chr6 3619683 3619726 -178795516 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2012 105 0 11 chr6 3619727 3620012 -178795230 - AluSc SINE Alu -27 282 1 1637 182 4 0 chr6 3620022 3620302 -178794940 - AluJo SINE Alu -26 286 6 189 0 0 0 chr6 3620529 3620550 -178794692 + (CA)n Simple_repeat Simple_repeat 1 21 0 252 416 0 0 chr6 3620895 3621068 -178794174 + C-rich Low_complexity Low_complexity 1 173 0 * 280 235 16 53 chr6 3620952 3621139 -178794103 + CT-rich Low_complexity Low_complexity 1 180 0 * 344 354 0 17 chr6 3621117 3621371 -178793871 + C-rich Low_complexity Low_complexity 1 249 0 384 260 0 44 chr6 3621413 3621594 -178793648 + C-rich Low_complexity Low_complexity 2 174 0 352 298 6 28 chr6 3621619 3621800 -178793442 + C-rich Low_complexity Low_complexity 2 178 0 202 309 52 0 chr6 3622395 3622492 -178792750 + MIR3 SINE MIR 86 187 -21 691 232 87 68 chr6 3623886 3624196 -178791046 - HAL1b LINE L1 -234 1114 799 2107 187 44 22 chr6 3624201 3624651 -178790591 + MLT1C LTR MaLR 8 467 0 320 301 0 42 chr6 3624654 3624797 -178790445 - HAL1b LINE L1 -549 799 663 252 185 0 0 chr6 3624805 3624859 -178790383 + CT-rich Low_complexity Low_complexity 4 57 0 243 284 11 42 chr6 3625497 3625592 -178789650 - MIR3 SINE MIR -6 202 111 2128 121 142 16 chr6 3626103 3626483 -178788759 - MSTA LTR MaLR 0 428 1 380 221 123 16 chr6 3626923 3627045 -178788197 + L2 LINE L2 3138 3272 0 295 265 128 0 chr6 3627175 3627277 -178787965 - MLT1J2 LTR MaLR -54 396 282 379 239 72 42 chr6 3628155 3628418 -178786824 + L1M2 LINE L1 5197 5473 -727 333 319 62 35 chr6 3628735 3628992 -178786250 + L2 LINE L2 2827 3090 -182 372 252 107 0 chr6 3630065 3630168 -178785074 - MER91C DNA MER1_type -26 114 1 367 229 24 0 chr6 3630686 3630769 -178784473 + LTR16C LTR ERVL 405 489 -2 260 320 20 60 chr6 3630771 3630921 -178784321 + MIR SINE MIR 99 242 -20 209 108 27 0 chr6 3631105 3631143 -178784099 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1056 206 0 0 chr6 3632199 3632393 -178782849 - MER58A DNA MER1_type -2 222 29 1701 167 53 35 chr6 3632459 3632539 -178782703 + MER7A DNA MER2_type 2 79 -2959 2081 108 10 0 chr6 3632539 3632834 -178782408 - AluSp SINE Alu -15 298 1 1701 167 53 35 chr6 3632834 3633094 -178782148 + MER7A DNA MER2_type 79 346 0 601 280 6 34 chr6 3633393 3633568 -178781674 + MIR SINE MIR 34 203 -59 248 231 39 0 chr6 3633613 3633665 -178781577 + L2 LINE L2 3169 3222 -50 231 247 156 0 chr6 3633954 3634031 -178781211 - MIR SINE MIR -66 196 108 572 272 119 98 chr6 3634138 3634191 -178781051 - L2 LINE L2 0 3272 3222 2208 182 36 77 chr6 3634191 3634724 -178780518 - MLT2B2 LTR ERVL 0 515 5 572 272 119 98 chr6 3634724 3635049 -178780193 - L2 LINE L2 -50 3222 2886 266 343 170 24 chr6 3635099 3635388 -178779854 - L2 LINE L2 -463 2851 2521 2167 157 10 20 chr6 3636384 3636778 -178778464 - L1MA8 LINE L1 -8 6283 5894 319 148 49 0 chr6 3637177 3637238 -178778004 - MLT1B LTR MaLR 0 390 327 2689 170 15 0 chr6 3637238 3637709 -178777533 - MLT1B-int LTR MaLR -892 479 2 2153 164 46 0 chr6 3637710 3638083 -178777159 - MLT1B LTR MaLR 0 390 1 1782 179 15 133 chr6 3638500 3639087 -178776155 + MLT2B1 LTR ERVL 3 520 0 946 282 51 0 chr6 3639198 3639514 -178775728 + L2 LINE L2 1878 2209 -1105 722 274 112 34 chr6 3639521 3639904 -178775338 - LTR16A LTR ERVL -12 438 26 657 287 72 5 chr6 3641385 3641608 -178773634 + MIR SINE MIR 25 262 0 1698 73 0 0 chr6 3641663 3641882 -178773360 + L1PA8 LINE L1 5954 6172 0 295 272 33 87 chr6 3643447 3643575 -178771667 + MIR SINE MIR 35 154 -62 27 0 0 0 chr6 3644678 3644705 -178770537 + AT_rich Low_complexity Low_complexity 1 27 0 2195 93 0 13 chr6 3645255 3645557 -178769685 - AluSx SINE Alu -14 298 1 301 271 94 10 chr6 3646145 3646360 -178768882 - L1MC4a LINE L1 -166 5955 5723 357 325 44 10 chr6 3646730 3646933 -178768309 - LTR16C LTR ERVL -27 464 255 1957 159 60 5 chr6 3647715 3648085 -178767157 - MLT1B LTR MaLR 0 390 1 231 170 0 0 chr6 3648157 3648204 -178767038 + CT-rich Low_complexity Low_complexity 2 48 0 569 157 52 11 chr6 3648212 3648484 -178766758 + (TCTA)n Simple_repeat Simple_repeat 1 283 0 704 262 33 11 chr6 3648535 3648718 -178766524 - MIR SINE MIR -59 203 17 660 309 97 78 chr6 3648776 3649911 -178765331 - L1MEc LINE L1 -3159 3056 1934 1377 195 31 14 chr6 3649979 3650271 -178764971 + AluJo SINE Alu 1 297 -15 278 132 0 94 chr6 3650349 3650402 -178764840 - MLT2B1 LTR ERVL 0 520 350 207 169 42 0 chr6 3650405 3650476 -178764766 + (TA)n Simple_repeat Simple_repeat 1 74 0 2261 172 67 26 chr6 3650480 3650940 -178764302 - MLT2B1 LTR ERVL -41 479 1 402 182 76 84 chr6 3651908 3652001 -178763241 + MIR SINE MIR 3 97 -111 1388 179 100 56 chr6 3652001 3652431 -178762811 + LTR7 LTR ERV1 2 450 0 402 182 76 84 chr6 3652431 3652482 -178762760 + MIR SINE MIR 97 147 -61 403 130 26 0 chr6 3652584 3652661 -178762581 + GA-rich Low_complexity Low_complexity 3 81 0 2298 58 0 3 chr6 3652724 3653017 -178762225 + AluY SINE Alu 2 293 -18 1398 56 0 0 chr6 3654680 3654860 -178760382 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1187 174 0 126 chr6 3654884 3655201 -178760041 - AluJo SINE Alu -6 306 30 1970 199 80 45 chr6 3655476 3656106 -178759136 - L1M4 LINE L1 -2608 3538 2909 5308 223 35 30 chr6 3656106 3658257 -178756985 - L1MD2 LINE L1 0 6753 3237 2388 253 24 28 chr6 3658256 3659182 -178756060 - L1MD2 LINE L1 -3265 3275 2401 * 693 186 0 90 chr6 3659183 3659294 -178755948 - AluJo SINE Alu -178 134 37 2362 74 10 7 chr6 3659294 3659593 -178755649 + AluY SINE Alu 1 300 -11 693 186 0 90 chr6 3659593 3659626 -178755616 - AluJo SINE Alu -275 37 3 1406 228 24 19 chr6 3659694 3660187 -178755055 - L1MD2 LINE L1 -5028 1515 1020 971 251 3 38 chr6 3660193 3660484 -178754758 + L1MB5 LINE L1 3439 3719 -2427 402 185 0 0 chr6 3660588 3660669 -178754573 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 1653 214 12 3 chr6 3660949 3661295 -178753947 + L1MB5 LINE L1 4931 5279 -867 1625 224 26 28 chr6 3661294 3661447 -178753795 + L1MA9 LINE L1 5852 6004 -308 * 369 0 0 0 chr6 3661447 3661488 -178753754 + (TG)n Simple_repeat Simple_repeat 2 42 0 1625 224 26 28 chr6 3661488 3661758 -178753484 + L1MA9 LINE L1 6004 6274 -38 * 4049 190 43 29 chr6 3661749 3662644 -178752598 + L1MB5 LINE L1 5266 6165 -9 1564 154 104 48 chr6 3662649 3663005 -178752237 + L1MC3 LINE L1 7346 7721 -64 327 250 11 11 chr6 3663277 3663369 -178751873 - L1MD2 LINE L1 -5631 899 808 258 355 0 28 chr6 3663600 3663741 -178751501 - L1MD2 LINE L1 -6202 338 202 195 129 0 0 chr6 3663743 3663774 -178751468 + (A)n Simple_repeat Simple_repeat 1 31 0 613 311 40 20 chr6 3664534 3664785 -178750457 - MARNA DNA Mariner -200 386 131 245 209 0 0 chr6 3664779 3664822 -178750420 + MARNA DNA Mariner 466 508 -78 * 330 231 33 11 chr6 3664971 3665062 -178750180 - MLT1J LTR MaLR -1 510 418 239 113 19 0 chr6 3665146 3665199 -178750043 + T-rich Low_complexity Low_complexity 1 54 0 262 172 16 78 chr6 3665199 3665263 -178749979 - MLT1J LTR MaLR -449 62 3 408 191 0 0 chr6 3665683 3665767 -178749475 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 243 0 0 0 chr6 3665836 3665863 -178749379 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 570 282 139 14 chr6 3666872 3667088 -178748154 - MIR SINE MIR -18 244 2 283 173 0 0 chr6 3667168 3667220 -178748022 - L2 LINE L2 -3 3310 3259 2141 193 24 39 chr6 3667253 3667788 -178747454 - MER74A LTR ERVL -30 528 2 327 25 0 0 chr6 3667841 3667881 -178747361 + (TG)n Simple_repeat Simple_repeat 2 41 0 2474 112 80 39 chr6 3668621 3668726 -178746516 + MSTA LTR MaLR 1 100 -328 2389 59 3 31 chr6 3668726 3669046 -178746196 - AluY SINE Alu 0 311 1 2474 112 80 39 chr6 3669046 3669351 -178745891 + MSTA LTR MaLR 100 428 0 1078 283 28 12 chr6 3669602 3669924 -178745318 - MLT1G1 LTR MaLR -206 389 63 354 98 0 0 chr6 3670246 3670297 -178744945 + (TG)n Simple_repeat Simple_repeat 1 51 0 2243 169 60 0 chr6 3670975 3671377 -178743865 + MSTB LTR MaLR 1 426 0 630 192 52 159 chr6 3671482 3671790 -178743452 - MER21B LTR ERV1 -566 297 23 298 223 11 53 chr6 3671848 3671942 -178743300 + HsTC2 DNA Tc2 13 102 -1796 714 254 59 21 chr6 3671953 3672271 -178742971 + HsTC2 DNA Tc2 1283 1898 0 316 285 79 62 chr6 3672271 3672895 -178742347 - L1ME4a LINE L1 -222 5899 5259 211 304 0 14 chr6 3673782 3673851 -178741391 - MIR SINE MIR -6 256 189 264 150 0 0 chr6 3674078 3674118 -178741124 - Tigger3(Golem) DNA MER2_type -2 3027 2988 223 308 8 34 chr6 3674124 3674241 -178741001 - L2 LINE L2 -574 2740 2627 242 222 14 14 chr6 3674391 3674463 -178740779 + CT-rich Low_complexity Low_complexity 2 73 0 267 180 41 25 chr6 3674474 3674596 -178740646 + CT-rich Low_complexity Low_complexity 2 125 0 507 186 207 21 chr6 3676060 3676200 -178739042 - MER5A DNA MER1_type 0 189 24 201 294 272 0 chr6 3676455 3676591 -178738651 + MIR SINE MIR 20 192 -70 212 203 219 0 chr6 3676912 3676976 -178738266 - MIR SINE MIR -96 166 89 1212 75 149 11 chr6 3677025 3677199 -178738043 - AluJo SINE Alu -24 288 91 300 297 89 10 chr6 3677199 3677300 -178737942 - MIR SINE MIR -56 152 44 285 297 129 43 chr6 3678057 3678266 -178736976 - L2 LINE L2 -14 3299 3073 231 189 0 0 chr6 3678276 3678329 -178736913 + (TG)n Simple_repeat Simple_repeat 2 54 0 233 281 22 52 chr6 3678395 3678530 -178736712 - L2 LINE L2 -216 3097 2967 2388 75 7 0 chr6 3678717 3679024 -178736218 - AluY SINE Alu -2 309 1 2190 96 4 0 chr6 3680822 3681103 -178734139 + AluSq SINE Alu 14 295 -18 247 258 247 0 chr6 3682413 3682510 -178732732 - MIR SINE MIR -81 181 61 2574 58 0 6 chr6 3682517 3682830 -178732412 - AluY SINE Alu 0 311 1 198 298 0 18 chr6 3684467 3684524 -178730718 + L2 LINE L2 3136 3191 -81 615 197 213 6 chr6 3684946 3685129 -178730113 + L1ME2 LINE L1 5943 6163 -1 281 279 196 6 chr6 3685370 3685549 -178729693 - L1ME LINE L1 -332 5789 5577 900 254 123 28 chr6 3686017 3686376 -178728866 + MLT1L LTR MaLR 207 599 -16 237 219 127 34 chr6 3686504 3686625 -178728617 - L1 LINE L1 -1113 5033 4908 389 304 147 16 chr6 3686865 3687355 -178727887 - L1 LINE L1 -1535 4611 4058 311 281 61 0 chr6 3687614 3687728 -178727514 - HAL1b LINE L1 -611 737 617 273 278 131 25 chr6 3687732 3687977 -178727265 - HAL1b LINE L1 -765 583 313 252 0 0 0 chr6 3688072 3688100 -178727142 + (TC)n Simple_repeat Simple_repeat 1 28 0 339 276 122 39 chr6 3689162 3689343 -178725899 + MIR SINE MIR 12 207 -55 2745 214 72 89 chr6 3689686 3690381 -178724861 - L1MC5 LINE L1 -45 7916 7253 222 37 0 0 chr6 3690381 3690408 -178724834 + (TC)n Simple_repeat Simple_repeat 1 27 0 2745 214 72 89 chr6 3690408 3691073 -178724169 - L1MC5 LINE L1 -708 7253 6578 1815 184 70 6 chr6 3692113 3692456 -178722786 - MLT1A1 LTR MaLR 0 365 1 2174 120 7 3 chr6 3692715 3693015 -178722227 + AluSx SINE Alu 1 301 -11 790 142 0 108 chr6 3693344 3693492 -178721750 + FLAM_A SINE Alu 1 132 -1 468 270 8 0 chr6 3693539 3693665 -178721577 - MER103 DNA DNA -36 130 4 383 240 20 89 chr6 3694759 3694905 -178720337 - L2 LINE L2 -36 3277 3142 254 306 209 0 chr6 3694912 3695046 -178720196 - MER5A DNA MER1_type -6 183 22 577 268 6 58 chr6 3695133 3695401 -178719841 - L2 LINE L2 -311 3002 2748 1853 247 18 26 chr6 3695417 3695571 -178719671 + L1ME1 LINE L1 5669 5823 -343 2223 115 0 3 chr6 3695571 3695883 -178719359 + AluSq SINE Alu 1 311 -2 1853 247 18 26 chr6 3695883 3696218 -178719024 + L1ME1 LINE L1 5823 6154 -12 22 0 0 0 chr6 3696218 3696240 -178719002 + AT_rich Low_complexity Low_complexity 1 22 0 324 299 56 0 chr6 3696287 3696394 -178718848 - L2 LINE L2 -578 2736 2624 417 294 7 7 chr6 3696395 3696548 -178718694 - L1MEc LINE L1 -4725 1671 1519 225 345 54 40 chr6 3696796 3696944 -178718298 - MIR3 SINE MIR -40 168 19 23 0 0 0 chr6 3698338 3698361 -178716881 + AT_rich Low_complexity Low_complexity 1 23 0 295 305 169 7 chr6 3698642 3698796 -178716446 + MER5A DNA MER1_type 7 185 -4 467 321 72 11 chr6 3699385 3699600 -178715642 - MIR SINE MIR -24 238 11 203 211 0 0 chr6 3699665 3699703 -178715539 - L2 LINE L2 -5 3267 3230 230 316 45 7 chr6 3700377 3700532 -178714710 + (TATATG)n Simple_repeat Simple_repeat 6 166 0 639 288 123 5 chr6 3702377 3702596 -178712646 - MIR SINE MIR -13 249 5 1901 118 24 3 chr6 3702610 3702898 -178712344 - L1MA4A LINE L1 -4 6299 6006 12082 171 35 55 chr6 3702903 3704776 -178710466 - L1 LINE L1 -1365 5483 3573 1327 189 20 46 chr6 3704776 3705078 -178710164 - AluJo SINE Alu -6 306 13 12082 171 35 55 chr6 3705078 3708611 -178706631 - L1 LINE L1 -3275 3573 8 2494 173 19 17 chr6 3708796 3709259 -178705983 + MLT2C2 LTR ERVL 1 464 0 200 321 24 0 chr6 3710083 3710167 -178705075 + (CATA)n Simple_repeat Simple_repeat 1 86 0 24 0 0 0 chr6 3710295 3710319 -178704923 + AT_rich Low_complexity Low_complexity 1 24 0 365 39 20 0 chr6 3710941 3710992 -178704250 + (CA)n Simple_repeat Simple_repeat 1 52 0 1450 177 18 201 chr6 3711954 3712682 -178702560 + MER45R DNA AcHobo 4 598 -983 236 236 153 42 chr6 3714410 3714482 -178700760 + L2 LINE L2 3167 3246 -26 922 44 0 0 chr6 3715207 3715320 -178699922 - AluY SINE Alu -16 295 183 274 308 143 0 chr6 3715321 3715412 -178699830 + L2 LINE L2 3149 3252 -20 363 325 21 5 chr6 3715829 3716020 -178699222 + L2 LINE L2 2297 2490 -824 2127 112 0 7 chr6 3716240 3716544 -178698698 - AluSg SINE Alu -8 302 1 436 349 99 71 chr6 3716660 3717024 -178698218 + L2 LINE L2 2890 3263 -9 5558 55 7 0 chr6 3717930 3718615 -178696627 + L1PA8 LINE L1 5483 6172 0 242 313 40 30 chr6 3718617 3718716 -178696526 - MIR SINE MIR -93 115 16 978 191 27 45 chr6 3718961 3719181 -178696061 + MER20 DNA MER1_type 2 217 -2 1071 212 104 34 chr6 3719200 3719469 -178695773 + AluJo SINE Alu 2 289 -13 538 206 23 17 chr6 3719481 3719656 -178695586 + GA-rich Low_complexity Low_complexity 1 176 0 26 30 0 0 chr6 3721847 3721880 -178693362 + AT_rich Low_complexity Low_complexity 1 33 0 1304 164 5 5 chr6 3722894 3723114 -178692128 - AluJo SINE Alu -20 292 73 1662 115 13 0 chr6 3724633 3724868 -178690374 + AluSx SINE Alu 43 280 -32 243 0 0 0 chr6 3724868 3724895 -178690347 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 297 206 29 0 chr6 3725020 3725122 -178690120 + (CA)n Simple_repeat Simple_repeat 2 106 0 250 222 19 0 chr6 3725150 3725204 -178690038 - MER4-int LTR ERV1 -5433 1165 1111 494 194 31 70 chr6 3725257 3725386 -178689856 + MER112 DNA MER1_type 128 251 -9 2337 94 0 0 chr6 3726452 3726760 -178688482 - AluSp SINE Alu -5 308 1 2107 179 47 38 chr6 3727603 3727656 -178687586 - L1MB3 LINE L1 0 6183 6132 2090 112 3 0 chr6 3727656 3727950 -178687292 - AluSq SINE Alu -18 295 1 2107 179 47 38 chr6 3727950 3728365 -178686877 - L1MB3 LINE L1 -51 6132 5711 1090 156 29 10 chr6 3729230 3729435 -178685807 - MLT1B LTR MaLR 0 390 182 230 109 0 219 chr6 3729442 3729506 -178685736 - MLT1B LTR MaLR -340 50 1 343 270 11 11 chr6 3729571 3729660 -178685582 + MER5A DNA MER1_type 18 106 -83 518 157 0 0 chr6 3730050 3730133 -178685109 + MER53 DNA DNA 107 189 0 300 277 36 0 chr6 3731380 3731463 -178683779 + L1MC4 LINE L1 6624 6709 -1333 332 83 73 0 chr6 3731491 3731587 -178683655 + (TA)n Simple_repeat Simple_repeat 1 103 0 1698 144 0 0 chr6 3731606 3731876 -178683366 - AluJb SINE Alu -27 285 16 317 288 161 0 chr6 3732231 3732349 -178682893 + MIR SINE MIR 25 161 -101 450 267 79 12 chr6 3734036 3734201 -178681041 - MLT1K LTR MaLR -24 564 389 2242 67 0 20 chr6 3734239 3734539 -178680703 + AluY SINE Alu 1 294 -17 2046 218 35 29 chr6 3734727 3735214 -178680028 + MER74A LTR ERVL 23 512 -46 2282 74 10 0 chr6 3735408 3735704 -178679538 - AluSx SINE Alu -13 299 1 515 305 110 13 chr6 3735811 3736047 -178679195 + MIR SINE MIR 4 262 0 4060 158 29 10 chr6 3736157 3736848 -178678394 - MER44D DNA MER2_type 0 705 2 431 276 32 42 chr6 3736909 3737220 -178678022 + L1MC4a LINE L1 5087 5394 -752 302 237 72 10 chr6 3737220 3737317 -178677925 - MLT1L LTR MaLR 0 615 513 245 338 0 0 chr6 3737535 3737606 -178677636 - MLT1J1 LTR MaLR -305 141 71 1063 262 144 63 chr6 3737636 3738259 -178676983 + MER21B LTR ERV1 23 696 -167 289 295 69 42 chr6 3738270 3738472 -178676770 - MER20B DNA MER1_type -4 215 5 233 310 14 0 chr6 3738527 3738598 -178676644 - MLT1L LTR MaLR -540 75 4 336 346 32 43 chr6 3738624 3738809 -178676433 + L1MC4a LINE L1 5420 5600 -562 2814 188 26 6 chr6 3738809 3739353 -178675889 + L1MB5 LINE L1 5613 6167 -7 336 346 32 43 chr6 3739353 3739443 -178675799 + L1MC4a LINE L1 5600 5689 -473 273 239 0 22 chr6 3739460 3739552 -178675690 + L1MC4 LINE L1 6614 6703 -1339 248 278 0 0 chr6 3739518 3739608 -178675634 - L1MC4 LINE L1 -1339 6703 6614 * 431 332 68 14 chr6 3739608 3739828 -178675414 + L1MC4a LINE L1 5667 5898 -1910 336 322 76 6 chr6 3739860 3740031 -178675211 + MIR SINE MIR 80 262 0 1785 172 0 0 chr6 3741030 3741321 -178673921 - AluJo SINE Alu -15 297 7 200 328 134 0 chr6 3742534 3742653 -178672589 + MIR SINE MIR 78 212 -50 852 193 59 5 chr6 3742708 3742895 -178672347 + L1MB4 LINE L1 5982 6178 -2 2150 260 91 38 chr6 3743121 3744486 -178670756 + L1ME3A LINE L1 4699 6136 -34 2235 109 3 0 chr6 3744509 3744820 -178670422 - AluSx SINE Alu 0 312 1 2114 184 0 13 chr6 3745115 3745506 -178669736 + L1MA8 LINE L1 3982 4367 -1779 5127 152 43 6 chr6 3745514 3746428 -178668814 + L1MA8 LINE L1 5323 6270 -21 4318 178 24 21 chr6 3746447 3747284 -178667958 + L1MB3 LINE L1 5293 6134 -49 2008 80 0 4 chr6 3747284 3747547 -178667695 + AluY SINE Alu 28 289 -22 4318 178 24 21 chr6 3747547 3747596 -178667646 + L1MB3 LINE L1 6134 6181 -2 326 275 29 80 chr6 3747820 3747958 -178667284 + L1ME4a LINE L1 5991 6121 0 198 118 0 0 chr6 3748865 3748899 -178666343 + (T)n Simple_repeat Simple_repeat 1 34 0 3842 240 49 20 chr6 3749848 3750230 -178665012 - MER45B DNA AcHobo -549 1032 663 2022 106 7 3 chr6 3750230 3750548 -178664694 - AluSg SINE Alu 0 319 1 3842 240 49 20 chr6 3750548 3750716 -178664526 - MER45B DNA AcHobo -918 663 501 2514 45 0 6 chr6 3750716 3751029 -178664213 + AluY SINE Alu 1 311 0 3842 240 49 20 chr6 3751029 3751478 -178663764 - MER45B DNA AcHobo -1080 501 1 350 265 163 21 chr6 3751956 3752288 -178662954 + HAL1 LINE L1 2009 2387 -120 2307 92 0 0 chr6 3752343 3752646 -178662596 - AluSx SINE Alu -9 303 1 2294 100 0 0 chr6 3752867 3753178 -178662064 - AluY SINE Alu 0 311 1 202 253 67 27 chr6 3753517 3753592 -178661650 - L2 LINE L2 -1 3271 3194 542 286 57 50 chr6 3753779 3754059 -178661183 + MLT1J LTR MaLR 229 510 -1 2337 78 113 0 chr6 3754059 3754394 -178660848 + MER51B LTR ERV1 1 373 -4 182 91 30 0 chr6 3755817 3755850 -178659392 + GA-rich Low_complexity Low_complexity 4 37 0 447 279 93 0 chr6 3756052 3756192 -178659050 - MER3 DNA MER1_type 0 209 57 648 205 93 9 chr6 3756476 3756659 -178658583 - MER20 DNA MER1_type -7 212 15 3438 182 44 4 chr6 3756950 3757626 -178657616 - L1MB2 LINE L1 -2 6169 5467 250 191 0 21 chr6 3757626 3757673 -178657569 - MLT1A1 LTR MaLR 0 365 320 2331 109 24 24 chr6 3757707 3758082 -178657160 + THE1C LTR MaLR 1 375 0 389 285 93 0 chr6 3758177 3758328 -178656914 - MLT1L LTR MaLR 0 615 451 213 330 54 18 chr6 3758715 3758827 -178656415 - L2 LINE L2 -4 3268 3153 203 161 0 0 chr6 3759735 3759766 -178655476 + T-rich Low_complexity Low_complexity 5 35 0 252 0 0 0 chr6 3760466 3760494 -178654748 + (CA)n Simple_repeat Simple_repeat 2 29 0 799 187 238 51 chr6 3761080 3761395 -178653847 - MLT1A2 LTR MaLR 0 374 1 433 256 89 28 chr6 3761421 3761601 -178653641 - MLT1L LTR MaLR -4 611 421 579 285 124 24 chr6 3761714 3761963 -178653279 - MLT1L LTR MaLR -341 274 1 304 310 35 44 chr6 3762488 3762691 -178652551 - L2 LINE L2 -187 3085 2885 1226 226 84 45 chr6 3762774 3763155 -178652087 - MSTD LTR MaLR 0 396 1 432 300 57 45 chr6 3764231 3764478 -178650764 - MIR SINE MIR 0 262 13 227 277 145 0 chr6 3764611 3764694 -178650548 + L2 LINE L2 3191 3285 -28 207 127 0 0 chr6 3765617 3765659 -178649583 + MIR SINE MIR 105 146 -62 348 276 23 0 chr6 3765693 3765780 -178649462 + MIR SINE MIR 70 158 -104 601 224 41 61 chr6 3766625 3766821 -178648421 - MER106A DNA MER1_type -43 193 2 1515 211 95 91 chr6 3766822 3767550 -178647692 + L1MC5 LINE L1 7199 7929 -32 188 278 83 53 chr6 3767857 3767990 -178647252 + MIR SINE MIR 10 146 -116 392 317 47 27 chr6 3768028 3768441 -178646801 - LTR67 LTR ERVL -35 522 24 187 323 0 0 chr6 3769002 3769067 -178646175 + MIR SINE MIR 158 222 -40 306 234 96 0 chr6 3770936 3771030 -178644212 + MIR SINE MIR 90 192 -70 7093 236 129 18 chr6 3771111 3773654 -178641588 + L1ME LINE L1 2389 5283 -881 212 59 29 0 chr6 3773654 3773688 -178641554 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3773688 3773965 -178641277 + L1ME LINE L1 5283 5528 -636 188 299 164 28 chr6 3774046 3774094 -178641148 - MIR SINE MIR -57 205 165 393 22 0 0 chr6 3774094 3774140 -178641102 + (TTA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3774140 3774268 -178640974 - MIR SINE MIR -97 165 5 926 158 0 23 chr6 3774626 3774797 -178640445 - MER5A DNA MER1_type 0 189 23 339 280 26 90 chr6 3774855 3775044 -178640198 + MER5B DNA MER1_type 2 178 0 288 350 10 0 chr6 3775058 3775158 -178640084 + MER81 DNA DNA 1 101 -13 540 224 82 35 chr6 3775199 3775369 -178639873 - MER5B DNA MER1_type 0 178 1 38741 83 12 7 chr6 3776670 3782790 -178632452 - L1PA6 LINE L1 0 6154 11 2248 233 26 6 chr6 3782906 3783447 -178631795 + L1M4 LINE L1 3819 4370 -1776 582 338 103 11 chr6 3784436 3784803 -178630439 + LTR33A LTR ERVL 67 467 -56 748 121 0 0 chr6 3785488 3785604 -178629638 - L1MA7 LINE L1 -17 6274 6159 1650 203 27 63 chr6 3785954 3786531 -178628711 - L1MB7 LINE L1 0 6334 5792 395 381 55 25 chr6 3786536 3786940 -178628302 - L3 LINE CR1 -1048 529 114 1412 193 24 17 chr6 3787252 3787575 -178627667 - L1MD3 LINE L1 0 7995 7577 201 74 0 0 chr6 3788526 3788553 -178626689 + (AATTG)n Simple_repeat Simple_repeat 2 28 0 2131 99 11 3 chr6 3789337 3789620 -178625622 + AluSp SINE Alu 3 287 -26 79 70 0 0 chr6 3789681 3789837 -178625405 + AT_rich Low_complexity Low_complexity 1 156 0 305 281 22 0 chr6 3790242 3790331 -178624911 - MIR SINE MIR -55 207 117 1154 165 29 25 chr6 3791113 3791355 -178623887 - L1ME1 LINE L1 -116 6050 5808 1824 220 97 14 chr6 3791758 3792295 -178622947 - MLT1F1 LTR MaLR 0 567 1 340 349 38 17 chr6 3793332 3793570 -178621672 - L1MDa LINE L1 -3597 2532 2290 305 265 79 53 chr6 3793600 3793789 -178621453 - L1MDa LINE L1 -3904 2225 2032 22 0 0 0 chr6 3793880 3793902 -178621340 + AT_rich Low_complexity Low_complexity 1 22 0 369 292 56 26 chr6 3794100 3794333 -178620909 - L1MDa LINE L1 -4514 1615 1376 438 279 69 54 chr6 3794480 3795000 -178620242 - L1MDa LINE L1 -4916 1203 676 2745 29 0 13 chr6 3795537 3795852 -178619390 + AluY SINE Alu 1 311 0 22 35 0 0 chr6 3796384 3796413 -178618829 + AT_rich Low_complexity Low_complexity 1 29 0 2321 82 0 0 chr6 3796417 3796699 -178618543 - AluY SINE Alu -29 282 1 2037 226 100 28 chr6 3796721 3797301 -178617941 + L1MD3 LINE L1 6518 7139 -856 2002 94 66 28 chr6 3797343 3797631 -178617611 + AluSc SINE Alu 1 299 -10 2600 248 43 11 chr6 3798593 3799298 -178615944 + L1MC4a LINE L1 7082 7808 0 788 96 37 29 chr6 3799304 3799355 -178615887 - L1MA4 LINE L1 -133 6167 6118 2139 167 27 50 chr6 3799355 3799561 -178615681 + Tigger2a DNA MER2_type 2 211 -2497 1782 184 0 7 chr6 3799561 3799855 -178615387 - AluJo SINE Alu -16 296 5 2139 167 27 50 chr6 3799855 3800091 -178615151 + Tigger2a DNA MER2_type 211 434 0 788 96 37 29 chr6 3800091 3800175 -178615067 - L1MA4 LINE L1 -182 6118 6031 650 106 99 80 chr6 3800163 3800314 -178614928 + L1MA5 LINE L1 6144 6297 -3 * 32 26 0 0 chr6 3800867 3800906 -178614336 + AT_rich Low_complexity Low_complexity 1 39 0 3518 67 25 2 chr6 3802504 3802979 -178612263 + LTR19A LTR ERV1 1 486 0 308 299 45 19 chr6 3803023 3803180 -178612062 - L2 LINE L2 -33 3280 3120 2113 249 66 45 chr6 3803200 3803522 -178611720 + MER21B LTR ERV1 15 329 -534 2977 155 46 4 chr6 3803522 3804026 -178611216 - LTR45 LTR ERV1 0 525 1 2113 249 66 45 chr6 3804026 3804413 -178610829 + MER21B LTR ERV1 329 739 -124 185 184 102 0 chr6 3804460 3804509 -178610733 - L2 LINE L2 -248 3065 3012 398 321 22 0 chr6 3804873 3805010 -178610232 - MIR SINE MIR -24 238 99 278 211 53 0 chr6 3805505 3805562 -178609680 - MER91A DNA MER1_type -14 182 123 333 240 149 78 chr6 3805744 3805995 -178609247 + MIR SINE MIR 2 262 0 2649 192 58 97 chr6 3806173 3806929 -178608313 + MER50 LTR ERV1 1 727 -7 201 242 0 0 chr6 3807327 3807418 -178607824 + (TG)n Simple_repeat Simple_repeat 2 92 0 189 303 13 26 chr6 3807984 3808060 -178607182 - L2 LINE L2 -19 3294 3220 718 106 10 0 chr6 3808261 3808365 -178606877 - LTR12 LTR ERV1 -130 584 480 369 231 11 0 chr6 3808365 3808456 -178606786 - LTR30 LTR ERV1 -79 643 552 964 98 379 15 chr6 3808463 3808666 -178606576 - LTR12 LTR ERV1 -432 282 6 2311 140 65 0 chr6 3808666 3809038 -178606204 + MSTA LTR MaLR 33 428 0 958 305 70 40 chr6 3809052 3809722 -178605520 - L2 LINE L2 -257 3015 2328 601 329 133 16 chr6 3809725 3810227 -178605015 - L2 LINE L2 -1589 1725 1165 233 378 0 0 chr6 3810235 3810317 -178604925 + MIR SINE MIR 181 262 0 287 278 268 20 chr6 3810352 3810550 -178604692 - L2 LINE L2 -2145 1169 923 4488 192 51 36 chr6 3810556 3812065 -178603177 + L1MB3 LINE L1 4627 6177 -6 344 300 0 11 chr6 3812078 3812168 -178603074 + L1MC4 LINE L1 6614 6702 -1340 319 215 0 131 chr6 3812110 3812217 -178603025 - L1MC4 LINE L1 -1336 6706 6614 * 344 345 31 11 chr6 3812247 3812438 -178602804 - L2 LINE L2 -2393 921 727 1394 186 34 34 chr6 3813656 3813947 -178601295 - AluJo SINE Alu -21 291 1 310 348 89 26 chr6 3814009 3814311 -178600931 + L2 LINE L2 2909 3229 -43 656 314 83 4 chr6 3815545 3815787 -178599455 - MIR SINE MIR 0 262 2 1077 76 8 0 chr6 3815840 3815972 -178599270 + AluSq/x SINE Alu 1 133 -180 2158 119 13 6 chr6 3815975 3816286 -178598956 + AluSq SINE Alu 1 313 0 986 157 13 6 chr6 3816613 3816772 -178598470 + AluJb SINE Alu 134 293 -19 423 0 0 0 chr6 3816887 3816934 -178598308 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 233 0 0 chr6 3816937 3816980 -178598262 + GA-rich Low_complexity Low_complexity 4 46 0 249 340 19 10 chr6 3817761 3817864 -178597378 - L2 LINE L2 -3 3310 3207 271 305 0 24 chr6 3818330 3818412 -178596830 + L2 LINE L2 3176 3255 -17 22 0 0 0 chr6 3818894 3818916 -178596326 + AT_rich Low_complexity Low_complexity 1 22 0 265 193 0 18 chr6 3819180 3819237 -178596005 + MLT1H LTR MaLR 6 61 -488 326 240 53 59 chr6 3819350 3819630 -178595612 + MLT1H LTR MaLR 229 549 0 325 292 42 33 chr6 3819686 3819806 -178595436 + L1MC/D LINE L1 5642 5762 -2046 1002 265 138 19 chr6 3819811 3820347 -178594895 + L1MC4a LINE L1 5519 6118 -1690 608 288 42 17 chr6 3820347 3820583 -178594659 + L2 LINE L2 1843 2084 -1230 482 249 130 23 chr6 3820710 3820887 -178594355 + L2 LINE L2 2072 2267 -1047 1545 184 4 15 chr6 3820891 3821163 -178594079 + AluJo SINE Alu 30 298 -14 2326 185 43 13 chr6 3822806 3823337 -178591905 + MER74A LTR ERVL 8 554 -4 7869 148 78 60 chr6 3824041 3825811 -178589431 - pTR5 LTR ERV1 -14 2424 65 640 267 51 33 chr6 3825960 3826293 -178588949 + Charlie8 DNA MER1_type 78 265 -2152 21 36 0 0 chr6 3827112 3827140 -178588102 + AT_rich Low_complexity Low_complexity 1 28 0 300 269 46 28 chr6 3828455 3828563 -178586679 - L2 LINE L2 0 3313 3204 1699 87 79 0 chr6 3832626 3832878 -178582364 - L1PB2 LINE L1 -2 6149 5878 269 311 44 0 chr6 3833111 3833201 -178582041 + MIR3 SINE MIR 104 197 -11 484 192 233 17 chr6 3835362 3835534 -178579708 + MIR SINE MIR 40 248 -14 1472 286 42 25 chr6 3836035 3836634 -178578608 - L1MC4a LINE L1 -128 7680 7072 184 255 0 0 chr6 3838619 3838666 -178576576 - L3 LINE CR1 -750 827 781 1211 101 39 119 chr6 3839193 3839285 -178575957 + L1 LINE L1 4557 4655 -1491 1721 164 87 0 chr6 3839285 3839572 -178575670 + AluJo SINE Alu 1 312 0 1211 101 39 119 chr6 3839572 3839765 -178575477 + L1 LINE L1 4655 4819 -1327 427 77 0 0 chr6 3839866 3839918 -178575324 + AluJ/FRAM SINE Alu 217 268 -44 886 97 0 0 chr6 3839919 3840033 -178575209 - AluSg SINE Alu -196 114 1 182 236 11 112 chr6 3840233 3840322 -178574920 + MER5A DNA MER1_type 49 128 -61 814 152 0 0 chr6 3840322 3840447 -178574795 + FRAM SINE Alu 39 163 -13 332 151 68 14 chr6 3840457 3840530 -178574712 - FLAM_A SINE Alu -27 106 30 524 287 32 43 chr6 3841829 3842017 -178573225 + L1ME4a LINE L1 5862 6047 -74 373 210 33 136 chr6 3843049 3843356 -178571886 - MER112 DNA MER1_type -6 254 1 318 146 24 122 chr6 3843489 3843571 -178571671 - LTR56 LTR ERV1 -176 269 196 324 128 39 64 chr6 3843585 3843663 -178571579 - LTR56 LTR ERV1 -369 76 1 709 219 30 25 chr6 3843664 3843865 -178571377 - L1ME1 LINE L1 -121 6045 5844 192 288 9 63 chr6 3844268 3844379 -178570863 + L2 LINE L2 2831 2935 -337 334 282 19 0 chr6 3844693 3844796 -178570446 + MER103 DNA DNA 54 158 -8 2258 79 0 7 chr6 3844970 3845250 -178569992 - AluSc SINE Alu -20 289 12 198 256 51 95 chr6 3846396 3846533 -178568709 + L2 LINE L2 3137 3267 -5 462 260 137 39 chr6 3847326 3847530 -178567712 - MER58A DNA MER1_type 0 224 1 306 284 0 21 chr6 3847562 3847657 -178567585 + L2 LINE L2 3221 3313 0 563 246 84 0 chr6 3848434 3848576 -178566666 - MER63A DNA MER1_type -8 202 49 517 292 99 9 chr6 3848625 3848859 -178566383 + MIR SINE MIR 6 262 0 733 299 53 73 chr6 3849632 3850164 -178565078 - LTR67 LTR ERVL -2 555 35 747 276 97 62 chr6 3850166 3850208 -178565034 - MLT1L LTR MaLR -6 609 570 2086 116 3 3 chr6 3850208 3850531 -178564711 + AluSx SINE Alu 1 323 0 747 276 97 62 chr6 3850531 3850650 -178564592 - MLT1L LTR MaLR -45 570 457 2416 115 0 0 chr6 3850650 3850962 -178564280 + AluSx SINE Alu 1 312 0 747 276 97 62 chr6 3850962 3851200 -178564042 - MLT1L LTR MaLR -158 457 194 611 301 5 0 chr6 3851376 3851562 -178563680 + MER117 DNA MER1_type 3 189 -8 781 263 46 29 chr6 3852156 3852396 -178562846 - MIR SINE MIR 0 262 19 275 218 65 99 chr6 3852443 3852578 -178562664 - MIR SINE MIR -76 132 27 399 212 146 22 chr6 3852771 3852908 -178562334 + MIR SINE MIR 90 243 -19 203 267 0 0 chr6 3853436 3853481 -178561761 + L2 LINE L2 3181 3225 -88 236 244 0 0 chr6 3853531 3853576 -178561666 + (TGGG)n Simple_repeat Simple_repeat 2 46 0 194 248 168 35 chr6 3854097 3854210 -178561032 - MIR SINE MIR -21 241 114 230 210 29 152 chr6 3854626 3854718 -178560524 + MER103 DNA DNA 36 107 -59 2474 88 0 3 chr6 3854718 3855026 -178560216 + AluSq SINE Alu 1 307 -6 230 210 29 152 chr6 3855026 3855071 -178560171 + MER103 DNA DNA 107 156 -10 180 348 0 14 chr6 3855557 3855626 -178559616 - MIR SINE MIR -125 83 16 359 248 34 34 chr6 3856810 3856927 -178558315 + MIR SINE MIR 1 117 -145 1539 252 88 13 chr6 3857076 3857600 -178557642 + MER115 DNA AcHobo 124 686 -7 871 196 36 0 chr6 3857761 3857929 -178557313 - AluJo SINE Alu -19 293 120 191 330 181 11 chr6 3858228 3858322 -178556920 + L2 LINE L2 3156 3265 -7 669 183 0 7 chr6 3858602 3858739 -178556503 - L1MA4 LINE L1 -4 6296 6161 312 232 24 56 chr6 3858843 3858968 -178556274 + L1ME4a LINE L1 5806 5926 -195 2204 136 3 0 chr6 3859107 3859417 -178555825 + AluSx SINE Alu 1 311 -1 228 243 49 135 chr6 3859601 3859786 -178555456 + MLT1J2 LTR MaLR 1 169 -281 387 259 49 0 chr6 3859843 3859957 -178555285 - MIR SINE MIR -41 221 103 22 35 0 0 chr6 3860107 3860136 -178555106 + AT_rich Low_complexity Low_complexity 1 29 0 1962 107 0 0 chr6 3860197 3860450 -178554792 + AluSq SINE Alu 1 253 -60 1958 160 21 27 chr6 3860561 3860937 -178554305 - THE1C LTR MaLR 0 375 2 496 97 14 0 chr6 3861335 3861407 -178553835 - MER58 DNA MER1_type -6 2414 2342 1166 84 0 0 chr6 3861458 3861600 -178553642 - AluSg/x SINE Alu -10 300 159 269 267 89 20 chr6 3861650 3861751 -178553491 - MLT1J LTR MaLR -1 510 403 625 119 0 0 chr6 3861968 3862052 -178553190 + AluSg/x SINE Alu 128 211 -99 202 61 61 0 chr6 3862054 3862087 -178553155 + A-rich Low_complexity Low_complexity 1 35 0 284 117 0 50 chr6 3862111 3862171 -178553071 + L1PB3 LINE L1 6096 6152 -2 436 260 167 0 chr6 3862222 3862372 -178552870 + MER5A DNA MER1_type 9 183 -6 472 257 135 7 chr6 3862388 3862536 -178552706 - MER5B DNA MER1_type -4 174 8 327 266 16 31 chr6 3864835 3864977 -178550265 + LTR16C LTR ERVL 332 457 0 2319 107 7 0 chr6 3866505 3866805 -178548437 + AluSq SINE Alu 1 302 -11 2261 95 0 17 chr6 3867473 3867768 -178547474 + AluSx SINE Alu 2 291 -21 752 252 174 60 chr6 3867818 3868271 -178546971 - MLT1J LTR MaLR -1 510 6 252 318 85 16 chr6 3869457 3869586 -178545656 - MIR SINE MIR -55 207 70 1523 199 117 103 chr6 3869601 3869906 -178545336 + MER21B LTR ERV1 13 312 -551 2386 88 0 0 chr6 3869906 3870202 -178545040 - AluY SINE Alu -14 297 2 1523 199 117 103 chr6 3870202 3870564 -178544678 + MER21B LTR ERV1 312 689 -174 355 252 41 61 chr6 3871229 3871376 -178543866 - MIR3 SINE MIR -52 156 13 225 152 43 0 chr6 3872131 3872177 -178543065 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 342 315 0 22 chr6 3872177 3872269 -178542973 + L1MC4 LINE L1 6617 6706 -1336 957 223 155 38 chr6 3872463 3872831 -178542411 + MLT1F1 LTR MaLR 1 436 -131 2390 185 32 13 chr6 3872858 3873383 -178541859 - L1MB7 LINE L1 -16 6168 5634 3150 189 18 46 chr6 3873493 3874549 -178540693 - L1ME LINE L1 -463 6510 5500 2429 235 62 38 chr6 3874549 3874838 -178540404 - L1ME LINE L1 -4683 2276 1995 234 0 0 0 chr6 3874838 3874864 -178540378 + (ATATG)n Simple_repeat Simple_repeat 2 27 0 2429 235 62 38 chr6 3874864 3875460 -178539782 - L1ME LINE L1 -4964 1995 1365 2126 133 0 32 chr6 3875460 3875775 -178539467 - AluSx SINE Alu -7 305 1 2429 235 62 38 chr6 3875775 3875954 -178539288 - L1ME LINE L1 -5594 1365 1192 1147 204 0 62 chr6 3876190 3876465 -178538777 - L1ME LINE L1 -5643 1216 959 243 337 71 18 chr6 3877091 3877260 -178537982 - L1ME LINE L1 -6659 200 23 252 256 31 70 chr6 3877439 3877568 -178537674 + L1MC4a LINE L1 6055 6178 -1630 2148 106 0 32 chr6 3877576 3877887 -178537355 + AluSc SINE Alu 1 301 -8 433 209 22 67 chr6 3878079 3878213 -178537029 - L1MA7 LINE L1 -234 6057 5930 1449 196 7 29 chr6 3878319 3878600 -178536642 - AluJo SINE Alu -7 305 31 384 234 227 0 chr6 3879129 3879257 -178535985 + MER5A DNA MER1_type 27 183 -6 180 344 16 0 chr6 3879254 3879318 -178535924 + L3b LINE CR1 1519 1583 0 * 304 271 125 0 chr6 3879804 3879900 -178535342 + MIR SINE MIR 36 143 -65 381 309 31 50 chr6 3880110 3880369 -178534873 - L1MC4a LINE L1 -1818 5990 5737 230 237 92 13 chr6 3880424 3880457 -178534785 - MIR SINE MIR -21 241 212 2196 105 17 7 chr6 3880457 3880752 -178534490 - AluSx SINE Alu -14 298 1 230 237 92 13 chr6 3880752 3880794 -178534448 - MIR SINE MIR -50 212 160 492 271 19 15 chr6 3880938 3881227 -178534015 + MLT1A2 LTR MaLR 33 320 -70 * 748 140 7 22 chr6 3881210 3881346 -178533896 + MLT1A1 LTR MaLR 232 365 0 841 208 71 30 chr6 3881635 3881971 -178533271 - MSTD LTR MaLR -7 389 1 2162 128 3 0 chr6 3882352 3882658 -178532584 - AluSx SINE Alu -1 311 5 917 217 87 93 chr6 3882973 3883172 -178532070 - MER2 DNA MER2_type -1 343 145 1552 191 4 0 chr6 3883172 3883449 -178531793 + AluJo SINE Alu 33 310 -2 917 217 87 93 chr6 3883449 3883594 -178531648 - MER2 DNA MER2_type -199 145 1 219 240 0 0 chr6 3884010 3884060 -178531182 + (CA)n Simple_repeat Simple_repeat 1 50 0 195 242 121 22 chr6 3884352 3884443 -178530799 - MIR3 SINE MIR -8 200 101 257 86 0 0 chr6 3884862 3884897 -178530345 + Alu SINE Alu 9 43 -265 379 291 153 0 chr6 3885972 3886131 -178529111 - MIR SINE MIR -47 215 41 5257 140 53 26 chr6 3886303 3887814 -178527428 + pTR5 LTR ERV1 743 2432 -6 1638 190 0 7 chr6 3887909 3888198 -178527044 + AluSx SINE Alu 1 287 -25 2183 113 3 0 chr6 3888851 3889143 -178526099 - AluSx SINE Alu -19 293 1 1728 113 92 18 chr6 3889143 3889425 -178525817 - AluJo SINE Alu -5 307 5 400 126 137 32 chr6 3889902 3889997 -178525245 + FLAM_A SINE Alu 38 142 0 21 0 0 0 chr6 3890154 3890175 -178525067 + AT_rich Low_complexity Low_complexity 1 21 0 634 269 48 0 chr6 3890296 3890463 -178524779 + MER5B DNA MER1_type 2 176 -2 435 221 188 0 chr6 3891395 3891544 -178523698 + MER53 DNA DNA 6 182 -7 2106 99 0 11 chr6 3895875 3896159 -178519083 - AluSx SINE Alu -24 288 8 317 369 87 34 chr6 3896532 3896738 -178518504 - MIR SINE MIR -30 232 16 1027 228 197 46 chr6 3898272 3899075 -178516167 + L2 LINE L2 2346 3310 -3 276 286 0 0 chr6 3899383 3899481 -178515761 - LTR50 LTR ERVL -123 672 575 482 282 8 8 chr6 3901052 3901169 -178514073 - L2 LINE L2 -4 3309 3193 2336 115 0 6 chr6 3901301 3901615 -178513627 + AluSx SINE Alu 1 312 0 271 160 40 0 chr6 3901787 3901837 -178513405 + MLT1C LTR MaLR 1 52 -415 782 238 24 29 chr6 3901862 3902072 -178513170 - MER20 DNA MER1_type -4 215 7 2696 37 0 0 chr6 3902102 3902402 -178512840 + AluY SINE Alu 1 300 -11 2700 143 27 6 chr6 3902402 3902876 -178512366 + MER34C LTR ERV1 102 585 0 245 311 61 40 chr6 3902889 3903037 -178512205 + MARNA DNA Mariner 62 212 -374 2099 135 0 3 chr6 3903199 3903502 -178511740 + AluSx SINE Alu 2 303 -9 264 59 0 0 chr6 3905364 3905398 -178509844 + (TG)n Simple_repeat Simple_repeat 2 35 0 2272 112 3 0 chr6 3906981 3907277 -178507965 + AluSq SINE Alu 1 297 -16 519 298 22 31 chr6 3907638 3907863 -178507379 - MER58A DNA MER1_type 0 224 2 723 239 48 21 chr6 3908926 3909114 -178506128 - MIR SINE MIR -13 249 57 2126 114 3 26 chr6 3909312 3909448 -178505794 + AluSg SINE Alu 1 139 -171 2236 100 3 7 chr6 3909448 3909737 -178505505 + AluSx SINE Alu 4 291 -21 2126 114 3 26 chr6 3909737 3909908 -178505334 + AluSg SINE Alu 139 301 -9 3779 141 8 2 chr6 3910468 3911071 -178504171 - L1MB3 LINE L1 -2 6181 5575 805 258 40 59 chr6 3911585 3911907 -178503335 - MER102b DNA MER1_type -25 316 1 261 215 0 0 chr6 3912159 3912224 -178503018 + MER69 DNA AcHobo 260 324 -2202 667 294 77 45 chr6 3912276 3912805 -178502437 + MER115 DNA AcHobo 97 693 0 1651 248 138 11 chr6 3912830 3913350 -178501892 - MLT1G LTR MaLR 0 590 5 303 211 0 0 chr6 3913354 3913411 -178501831 + MER69 DNA AcHobo 341 397 -829 1020 184 89 53 chr6 3913412 3913716 -178501526 + MER69 DNA AcHobo 1955 2269 -257 256 309 12 0 chr6 3914039 3914123 -178501119 - L2 LINE L2 -317 2955 2871 1947 123 7 16 chr6 3914939 3915247 -178499995 - AluSx SINE Alu -6 306 2 386 304 53 23 chr6 3915330 3915501 -178499741 + MIR3 SINE MIR 3 172 -36 21 0 0 0 chr6 3915955 3915976 -178499266 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 3916402 3916430 -178498812 + AT_rich Low_complexity Low_complexity 1 28 0 252 143 0 0 chr6 3916448 3916490 -178498752 + (A)n Simple_repeat Simple_repeat 1 42 0 407 283 139 55 chr6 3916624 3917030 -178498212 + L1ME4a LINE L1 5564 5991 -171 24 0 0 0 chr6 3917086 3917110 -178498132 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 42 19 chr6 3917537 3917675 -178497567 + L1MC/D LINE L1 5694 5835 -286 225 200 0 0 chr6 3917787 3917832 -178497410 + T-rich Low_complexity Low_complexity 1 45 0 333 191 143 19 chr6 3917874 3917979 -178497263 - L1ME1 LINE L1 -5 6161 6044 377 192 90 0 chr6 3917980 3918058 -178497184 - LTR23 LTR ERV1 0 437 353 2232 80 0 7 chr6 3918133 3918458 -178496784 + AluY SINE Alu 1 323 0 701 88 78 0 chr6 3918459 3918561 -178496681 - AluSg SINE Alu -199 111 2 543 257 48 16 chr6 3918783 3918970 -178496272 - L1ME1 LINE L1 -18 6148 5956 2395 179 22 2 chr6 3918976 3919389 -178495853 + MSTB1 LTR MaLR 2 422 -10 621 174 14 14 chr6 3919402 3919540 -178495702 - L1ME1 LINE L1 -215 5951 5814 2001 130 7 0 chr6 3919565 3919864 -178495378 - AluY SINE Alu -10 301 1 921 113 8 0 chr6 3919865 3919998 -178495244 - AluSq/x SINE Alu -179 134 1 391 191 112 0 chr6 3919998 3920087 -178495155 - L1ME1 LINE L1 -341 5825 5727 870 191 0 23 chr6 3920087 3920260 -178494982 - FRAM SINE Alu -6 170 2 767 203 80 0 chr6 3920268 3920431 -178494811 - L1ME1 LINE L1 -502 5664 5489 1546 199 28 72 chr6 3920431 3920819 -178494423 + MSTD LTR MaLR 1 371 -25 1062 229 87 81 chr6 3920932 3921390 -178493852 + MLT1H LTR MaLR 77 537 -12 288 183 97 43 chr6 3921767 3921860 -178493382 - MER5A DNA MER1_type -83 106 9 562 278 29 0 chr6 3921896 3922069 -178493173 - MER5B DNA MER1_type 0 178 1 1813 110 4 0 chr6 3922767 3923021 -178492221 + AluSg SINE Alu 1 255 -55 2919 145 22 0 chr6 3923121 3923611 -178491631 + L1MA6 LINE L1 5799 6299 -1 580 131 0 0 chr6 3925749 3925833 -178489409 - AluS SINE Alu -224 89 6 2192 104 0 0 chr6 3926336 3926635 -178488607 - AluSc SINE Alu -8 301 3 3069 158 19 14 chr6 3927044 3927062 -178488180 - LTR45 LTR ERV1 -2 523 507 2502 101 59 0 chr6 3927062 3927418 -178487824 - MER51B LTR ERV1 0 377 1 3069 158 19 14 chr6 3927418 3927919 -178487323 - LTR45 LTR ERV1 -18 507 1 266 232 182 0 chr6 3929402 3929501 -178485741 + MER103 DNA DNA 2 118 -48 10843 128 30 8 chr6 3929933 3931960 -178483282 + Tigger1 DNA MER2_type 1 2418 0 189 341 34 0 chr6 3931973 3932061 -178483181 + L2 LINE L2 2666 2756 -558 266 88 0 0 chr6 3932173 3932207 -178483035 + Alu SINE Alu 1 34 -266 2410 253 102 35 chr6 3982243 3983145 -178432097 - ERVL LTR ERVL -637 5127 4166 580 227 122 46 chr6 3983225 3983529 -178431713 - HAL1 LINE L1 -1069 1438 1112 375 254 24 73 chr6 3983553 3983718 -178431524 - L1MD2 LINE L1 -2 6357 6201 1739 235 87 5 chr6 3985050 3985561 -178429681 - L1MD2 LINE L1 -147 6212 5664 556 247 35 56 chr6 3985562 3985685 -178429557 - HAL1 LINE L1 -1427 1080 956 2172 115 7 3 chr6 3985685 3985990 -178429252 - AluSx SINE Alu -6 306 1 556 247 35 56 chr6 3985990 3986153 -178429089 - HAL1 LINE L1 -1551 956 800 571 139 0 46 chr6 3986198 3986306 -178428936 - MLT1J2 LTR MaLR -2 448 346 374 299 28 40 chr6 3986377 3986554 -178428688 + HAL1 LINE L1 2258 2432 -75 1863 149 41 24 chr6 3986767 3987136 -178428106 - THE1C LTR MaLR 0 375 1 309 284 45 0 chr6 3987395 3987483 -178427759 - L1MD2 LINE L1 -863 5283 5192 276 257 0 53 chr6 3987483 3987599 -178427643 - MIR SINE MIR -97 111 17 3032 126 6 12 chr6 3987646 3988140 -178427102 + L1PA13 LINE L1 5666 6156 -7 478 269 58 32 chr6 3988154 3988310 -178426932 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 3988363 3988393 -178426849 + AT_rich Low_complexity Low_complexity 1 30 0 577 274 18 39 chr6 3988777 3989058 -178426184 + MARNA DNA Mariner 191 465 -121 2375 124 5 22 chr6 3989357 3989727 -178425515 + THE1B LTR MaLR 1 364 0 708 181 9 0 chr6 3990989 3991105 -178424137 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 3991111 3991135 -178424107 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2420 84 0 0 chr6 3991717 3992044 -178423198 + AluSc SINE Alu 1 309 0 962 174 0 0 chr6 3992123 3992284 -178422958 - FRAM SINE Alu -4 172 12 295 281 0 0 chr6 3995071 3995135 -178420107 - L2 LINE L2 -5 3267 3204 2282 92 0 10 chr6 3995598 3995904 -178419338 + AluSg SINE Alu 1 303 -7 760 172 85 68 chr6 3995905 3996128 -178419114 - MLT1C LTR MaLR 0 467 178 2332 83 3 0 chr6 3996128 3996428 -178418814 - AluSc SINE Alu -6 303 3 760 172 85 68 chr6 3996428 3996488 -178418754 - MLT1C LTR MaLR -289 178 120 804 214 144 28 chr6 3996488 3996773 -178418469 - LTR36 LTR ERV1 -1 610 293 326 185 0 0 chr6 3996940 3997003 -178418239 - MLT1C LTR MaLR -263 127 65 3093 116 22 41 chr6 3997003 3997588 -178417654 + MER4B LTR ERV1 1 574 -36 412 95 0 81 chr6 3997619 3997693 -178417549 - MLT1C LTR MaLR -399 68 1 1630 241 47 9 chr6 3997730 3998154 -178417088 + MER21B LTR ERV1 12 451 -412 883 121 0 0 chr6 3998163 3998287 -178416955 - FRAM SINE Alu -1 175 52 3595 138 98 8 chr6 3998287 3998938 -178416304 - MER50 LTR ERV1 -24 710 1 329 210 0 0 chr6 3998938 3998996 -178416246 - AluJ/FLAM SINE Alu -244 58 1 850 254 50 53 chr6 3999004 3999342 -178415900 + MER21B LTR ERV1 466 802 -61 2337 104 0 0 chr6 3999759 4000057 -178415185 + AluSq SINE Alu 1 298 -15 240 309 0 0 chr6 4000115 4000196 -178415046 + L1ME LINE L1 4263 4343 -1803 648 260 61 25 chr6 4000609 4000638 -178414604 + MIR SINE MIR 52 79 -183 1775 161 27 3 chr6 4000638 4000930 -178414312 + AluJb SINE Alu 4 302 -10 648 260 61 25 chr6 4000930 4001096 -178414146 + MIR SINE MIR 79 254 -8 2084 133 3 0 chr6 4001240 4001540 -178413702 + AluSx SINE Alu 1 301 -11 297 293 81 17 chr6 4001622 4001796 -178413446 + L1ME LINE L1 5477 5661 -460 244 333 29 29 chr6 4003519 4003624 -178411618 - L2 LINE L2 -8 3305 3201 716 85 171 0 chr6 4003624 4003753 -178411489 + LTR24C LTR ERV1 1 151 -484 263 309 31 10 chr6 4003839 4003936 -178411306 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4004383 4004443 -178410799 + (A)n Simple_repeat Simple_repeat 1 57 0 1019 119 0 0 chr6 4004494 4004628 -178410614 + AluSq/x SINE Alu 2 135 -177 1849 162 3 7 chr6 4004628 4004924 -178410318 + AluSx SINE Alu 1 295 -17 1690 144 39 35 chr6 4006672 4006957 -178408285 + AluJo SINE Alu 1 286 -26 570 230 118 6 chr6 4007309 4007470 -178407772 + MIR SINE MIR 57 235 -27 1880 59 0 0 chr6 4007553 4007774 -178407468 - AluY SINE Alu -17 294 74 1871 153 3 10 chr6 4008665 4008965 -178406277 + AluJb SINE Alu 1 298 -14 339 313 108 5 chr6 4009324 4009519 -178405723 + LTR16A LTR ERVL 158 372 -78 525 298 180 13 chr6 4009851 4010167 -178405075 - MLT1I LTR MaLR 0 409 41 1921 139 38 46 chr6 4010296 4010642 -178404600 + MER2 DNA MER2_type 1 343 -1 234 267 174 0 chr6 4010749 4010835 -178404407 - L2 LINE L2 -4 3309 3209 1039 115 4 106 chr6 4010954 4011189 -178404053 + L1MB7 LINE L1 5907 6117 -67 2396 66 0 7 chr6 4011221 4011524 -178403718 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4011527 4011572 -178403670 + (T)n Simple_repeat Simple_repeat 1 45 0 619 263 108 44 chr6 4011744 4013000 -178402242 + L1M4 LINE L1 3790 5167 -979 2238 104 3 10 chr6 4013001 4013310 -178401932 + AluSg SINE Alu 1 307 -3 2089 95 0 0 chr6 4013337 4013601 -178401641 + AluSq SINE Alu 1 264 -49 468 273 43 91 chr6 4013853 4014084 -178401158 - MIR SINE MIR -42 220 1 201 209 0 47 chr6 4014392 4014435 -178400807 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4014558 4014594 -178400648 + AT_rich Low_complexity Low_complexity 1 36 0 478 295 61 120 chr6 4015340 4015480 -178399762 - L2 LINE L2 -1 3312 3165 2212 100 13 0 chr6 4015480 4015779 -178399463 + AluSp SINE Alu 1 303 -10 478 295 61 120 chr6 4015779 4016198 -178399044 - L2 LINE L2 -148 3165 2768 1042 134 6 39 chr6 4016344 4016523 -178398719 - FRAM SINE Alu -1 175 3 739 209 60 0 chr6 4017045 4017260 -178397982 + Charlie1 DNA MER1_type 2534 2761 0 410 289 170 7 chr6 4017663 4017798 -178397444 + MER5A DNA MER1_type 33 189 0 431 355 38 12 chr6 4018096 4018440 -178396802 + L1MEc LINE L1 32 384 -6012 5550 173 22 18 chr6 4018545 4019455 -178395787 + L1 LINE L1 4081 4997 -1149 2033 125 31 7 chr6 4019455 4019744 -178395498 + AluSx SINE Alu 1 296 -16 5550 173 22 18 chr6 4019744 4020030 -178395212 + L1 LINE L1 4997 5281 -865 1038 169 0 28 chr6 4020039 4020216 -178395026 + AluJo SINE Alu 16 187 -125 1139 148 0 44 chr6 4020218 4020421 -178394821 + AluJo SINE Alu 119 312 0 1062 251 117 39 chr6 4020422 4021001 -178394241 + L1MEc LINE L1 1737 2347 -3868 2115 107 0 0 chr6 4021001 4021316 -178393926 + AluSg SINE Alu 1 315 0 1062 251 117 39 chr6 4021316 4021581 -178393661 + L1MEc LINE L1 2347 2590 -3625 1007 289 150 28 chr6 4021644 4022039 -178393203 + L2 LINE L2 2339 2809 -505 754 189 8 0 chr6 4022039 4022171 -178393071 - FLAM_C SINE Alu 0 133 1 1007 289 150 28 chr6 4022171 4022276 -178392966 + L2 LINE L2 2809 2900 -414 2244 85 0 0 chr6 4022333 4022645 -178392597 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4022710 4022734 -178392508 + AT_rich Low_complexity Low_complexity 1 24 0 326 327 152 14 chr6 4022965 4023176 -178392066 - MIR SINE MIR -21 241 2 303 257 88 22 chr6 4023355 4023491 -178391751 + L1ME4a LINE L1 5944 6088 -33 349 301 114 10 chr6 4025253 4025433 -178389809 + MIR SINE MIR 13 206 -2 1890 84 73 14 chr6 4025499 4025785 -178389457 - AluSq SINE Alu -10 303 1 2312 65 17 3 chr6 4025985 4026278 -178388964 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4027833 4027855 -178387387 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4028132 4028166 -178387076 + (T)n Simple_repeat Simple_repeat 1 34 0 880 192 62 6 chr6 4028988 4029165 -178386077 - MIR SINE MIR -74 188 2 1111 183 48 60 chr6 4029386 4029551 -178385691 - AluJb SINE Alu -3 309 147 2168 113 0 0 chr6 4029551 4029843 -178385399 - AluSc SINE Alu -17 292 1 1111 183 48 60 chr6 4029843 4029928 -178385314 - AluJb SINE Alu -165 147 62 540 187 0 0 chr6 4029931 4030022 -178385220 + FLAM_A SINE Alu 31 121 -21 2145 110 14 3 chr6 4030291 4030582 -178384660 - AluSx SINE Alu -18 294 1 274 295 95 0 chr6 4031531 4031626 -178383616 - L2 LINE L2 -2 3311 3208 2366 90 0 7 chr6 4031682 4031982 -178383260 - AluSp SINE Alu -15 298 1 2155 114 3 3 chr6 4031982 4032281 -178382961 - AluSx SINE Alu -13 299 1 995 266 173 10 chr6 4032309 4032824 -178382418 - L2 LINE L2 -11 3302 2709 722 178 144 29 chr6 4032951 4033159 -178382083 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 4033304 4033510 -178381732 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 4033866 4034184 -178381058 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 4034311 4034366 -178380876 + L2 LINE L2 353 407 -2907 1064 131 6 18 chr6 4034693 4034861 -178380381 - FRAM SINE Alu 0 166 1 1735 170 13 42 chr6 4035018 4035329 -178379913 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 4035608 4035921 -178379321 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 4036425 4036501 -178378741 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 4036668 4036693 -178378549 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 4037325 4037441 -178377801 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 4039919 4040223 -178375019 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 4040361 4040680 -178374562 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 4040750 4040777 -178374465 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 4040786 4041125 -178374117 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 4041372 4041650 -178373592 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 4041918 4042200 -178373042 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 4042204 4042354 -178372888 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 4042388 4042686 -178372556 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 4043961 4043990 -178371252 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 4043995 4044227 -178371015 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 4044480 4044650 -178370592 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 4044664 4045340 -178369902 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 4045501 4045536 -178369706 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 4045581 4045858 -178369384 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 4045937 4046071 -178369171 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 4046302 4046405 -178368837 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 4047066 4047252 -178367990 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 4047311 4047487 -178367755 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 4047827 4047904 -178367338 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 4049033 4049350 -178365892 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 4050055 4050388 -178364854 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 4050388 4050524 -178364718 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 4050524 4050837 -178364405 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 4050837 4051037 -178364205 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 4051037 4051330 -178363912 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 4051698 4052164 -178363078 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 4052339 4052636 -178362606 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 4052983 4053105 -178362137 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 4053580 4053625 -178361617 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 4053775 4054079 -178361163 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 4054230 4054471 -178360771 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 4055697 4056004 -178359238 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 4056564 4056888 -178358354 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 4056966 4057295 -178357947 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 4057931 4058050 -178357192 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 4059015 4059191 -178356051 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 4059568 4059880 -178355362 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 4060194 4060470 -178354772 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 4061929 4061959 -178353283 + AT_rich Low_complexity Low_complexity 1 30 0 1207 86 37 0 chr6 4063430 4063592 -178351650 - AluY SINE Alu -9 302 135 1115 165 36 45 chr6 4063689 4063913 -178351329 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 4064682 4064705 -178350537 + AT_rich Low_complexity Low_complexity 1 23 0 236 331 74 29 chr6 4064753 4064928 -178350314 + L2 LINE L2 2652 2834 -480 2066 122 3 23 chr6 4065319 4065623 -178349619 - AluSx SINE Alu -14 298 1 915 191 83 5 chr6 4065766 4065970 -178349272 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 4068187 4068208 -178347034 + AT_rich Low_complexity Low_complexity 1 21 0 848 168 48 12 chr6 4071292 4071459 -178343783 - AluSc SINE Alu -2 307 135 600 256 130 27 chr6 4072032 4072255 -178342987 - MIR SINE MIR -13 249 4 2213 96 31 0 chr6 4072900 4073191 -178342051 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 4073242 4073272 -178341970 + AT_rich Low_complexity Low_complexity 1 30 0 292 302 0 23 chr6 4073370 4073456 -178341786 + MER5A DNA MER1_type 8 91 -98 260 366 81 8 chr6 4073396 4073532 -178341710 - MER5A DNA MER1_type -22 167 11 * 22 0 0 0 chr6 4075600 4075622 -178339620 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 4075781 4075813 -178339429 + AT_rich Low_complexity Low_complexity 1 32 0 1638 201 30 0 chr6 4076401 4076704 -178338538 + AluJb SINE Alu 1 312 0 422 291 133 0 chr6 4077101 4077266 -178337976 - MIR SINE MIR -74 188 2 298 261 0 15 chr6 4077650 4077715 -178337527 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 4077739 4078037 -178337205 + AluSq SINE Alu 1 301 -12 776 58 58 33 chr6 4078037 4078157 -178337085 + L1PA8 LINE L1 6050 6172 0 2282 98 3 0 chr6 4078159 4078454 -178336788 + AluSp SINE Alu 1 296 -17 705 235 27 27 chr6 4078480 4078663 -178336579 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 4079061 4079088 -178336154 + AT_rich Low_complexity Low_complexity 1 27 0 1960 133 3 20 chr6 4079530 4079830 -178335412 - AluSx SINE Alu -17 295 1 2141 108 0 40 chr6 4080728 4081051 -178334191 + AluSx SINE Alu 1 310 -2 428 292 81 49 chr6 4081434 4081619 -178333623 + L3b LINE CR1 1303 1493 -90 232 81 0 27 chr6 4081635 4081672 -178333570 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 4081723 4082034 -178333208 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 4082034 4082065 -178333177 + MER5A DNA MER1_type 111 141 -48 361 222 25 0 chr6 4082067 4082148 -178333094 + U13 snRNA snRNA 1 83 -21 2049 108 37 17 chr6 4082275 4082571 -178332671 + AluSx SINE Alu 1 302 -10 2589 63 0 0 chr6 4083728 4084030 -178331212 - AluSg SINE Alu -8 302 1 307 277 133 80 chr6 4084569 4084981 -178330261 - L1M2 LINE L1 -5826 1023 590 * 332 244 182 101 chr6 4084895 4085350 -178329892 + L1M2 LINE L1 776 1267 -5582 25 31 0 0 chr6 4085710 4085742 -178329500 + AT_rich Low_complexity Low_complexity 1 32 0 643 218 91 63 chr6 4085911 4086163 -178329079 + L2 LINE L2 3032 3290 -23 187 152 0 182 chr6 4086760 4086826 -178328416 + L2 LINE L2 3215 3268 -4 362 263 26 26 chr6 4086851 4086965 -178328277 - MIR SINE MIR -13 249 136 2140 104 3 35 chr6 4086972 4087290 -178327952 - AluSx SINE Alu -4 308 1 3725 103 68 6 chr6 4087985 4088531 -178326711 + MER39B LTR ERV1 1 580 -73 543 233 10 0 chr6 4088531 4088634 -178326608 - AluSc SINE Alu -93 216 113 2097 142 0 7 chr6 4089218 4089528 -178325714 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 4090990 4091027 -178324215 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 4091486 4091506 -178323736 + GA-rich Low_complexity Low_complexity 2 20 -49 1701 156 48 17 chr6 4091506 4091795 -178323447 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 4091795 4091840 -178323402 + GA-rich Low_complexity Low_complexity 20 69 0 2365 98 3 0 chr6 4091843 4092150 -178323092 + AluSp SINE Alu 1 308 -5 1213 175 16 70 chr6 4093524 4093838 -178321404 - AluJo SINE Alu -15 297 1 2414 67 3 3 chr6 4093996 4094296 -178320946 - AluY SINE Alu -11 300 1 2090 112 34 3 chr6 4094753 4095047 -178320195 + AluSx SINE Alu 1 303 -9 1114 138 56 81 chr6 4095144 4095189 -178320053 - MLT1A1 LTR MaLR 0 365 320 2315 97 10 0 chr6 4095189 4095489 -178319753 + AluSq SINE Alu 1 303 -10 1114 138 56 81 chr6 4095489 4095686 -178319556 - MLT1A1 LTR MaLR -45 320 173 6019 117 208 86 chr6 4095687 4097156 -178318086 + pTR5 LTR ERV1 791 2438 0 592 183 32 40 chr6 4097195 4097321 -178317921 - MLT1A1 LTR MaLR -240 125 1 277 85 85 43 chr6 4097438 4097485 -178317757 + Tigger2 DNA MER2_type 1 49 -2669 258 250 24 97 chr6 4097490 4097614 -178317628 + LTR4 LTR ERV1 5 119 -477 764 232 28 46 chr6 4097851 4098135 -178317107 + LTR4 LTR ERV1 318 596 0 4123 131 29 50 chr6 4098135 4098256 -178316986 + Tigger2 DNA MER2_type 47 169 -2549 1929 126 7 0 chr6 4098256 4098526 -178316716 + AluSx SINE Alu 5 276 -36 4123 131 29 50 chr6 4098526 4098729 -178316513 + Tigger2 DNA MER2_type 169 375 -2343 2128 124 3 0 chr6 4098729 4099027 -178316215 + AluSq SINE Alu 1 299 -14 4123 131 29 50 chr6 4099027 4099424 -178315818 + Tigger2 DNA MER2_type 375 754 -1964 936 142 77 27 chr6 4099476 4099501 -178315741 + Tigger2 DNA MER2_type 2451 2473 -235 2067 131 7 0 chr6 4099501 4099799 -178315443 - AluSx SINE Alu -12 300 1 936 142 77 27 chr6 4099799 4099956 -178315286 + Tigger2 DNA MER2_type 2473 2642 -66 639 119 30 50 chr6 4100004 4100083 -178315159 + FLAM_A SINE Alu 29 107 -204 2160 106 13 7 chr6 4100083 4100384 -178314858 - AluSc SINE Alu -6 303 1 639 119 30 50 chr6 4100384 4100405 -178314837 + FLAM_A SINE Alu 107 127 -184 360 221 15 0 chr6 4100406 4100474 -178314768 + Tigger2 DNA MER2_type 2640 2708 -10 2173 99 3 0 chr6 4100487 4100810 -178314432 - AluSx SINE Alu 0 324 1 1671 193 74 37 chr6 4101022 4101452 -178313790 + MLT1C LTR MaLR 18 463 -4 490 288 70 27 chr6 4101736 4102128 -178313114 + L1ME4a LINE L1 5600 6016 -105 26 0 0 0 chr6 4102982 4103008 -178312234 + AT_rich Low_complexity Low_complexity 1 26 0 1446 138 9 9 chr6 4103012 4103236 -178312006 + AluJo SINE Alu 36 259 -53 2374 51 27 0 chr6 4103856 4104148 -178311094 - AluY SINE Alu -11 300 1 2308 84 0 0 chr6 4104279 4104564 -178310678 - AluY SINE Alu -26 285 1 373 272 234 0 chr6 4105300 4105484 -178309758 - L2 LINE L2 -549 2765 2539 2233 112 3 13 chr6 4105588 4105902 -178309340 - AluSx SINE Alu -1 311 1 2004 156 130 16 chr6 4106362 4106746 -178308496 + MSTA LTR MaLR 1 428 0 204 302 0 38 chr6 4106938 4106991 -178308251 + L2 LINE L2 3163 3213 -59 471 252 25 0 chr6 4107095 4107214 -178308028 - MLT1H LTR MaLR -425 124 3 2499 143 16 9 chr6 4107463 4107888 -178307354 + L1MA3 LINE L1 5600 6027 -278 2607 127 8 3 chr6 4107890 4108276 -178306966 + L1MA5 LINE L1 5903 6290 -10 2394 97 0 0 chr6 4109249 4109560 -178305682 - AluSq SINE Alu -2 311 1 346 127 0 0 chr6 4109567 4109622 -178305620 - Alu SINE Alu -1 299 245 3763 211 101 51 chr6 4109958 4110330 -178304912 - L1M LINE L1 -773 5393 5041 2419 78 0 0 chr6 4110330 4110625 -178304617 + AluY SINE Alu 1 295 -16 3763 211 101 51 chr6 4110625 4110776 -178304466 - L1M LINE L1 -1125 5041 4899 2267 115 7 0 chr6 4110776 4111071 -178304171 - AluSx SINE Alu -15 297 1 3763 211 101 51 chr6 4111071 4111511 -178303731 - L1M LINE L1 -1267 4899 4482 3161 164 130 23 chr6 4111511 4112217 -178303025 - LTR48 LTR ERV1 -3 784 3 3763 211 101 51 chr6 4112217 4112371 -178302871 - L1M LINE L1 -1684 4482 4337 2994 161 39 17 chr6 4112371 4112911 -178302331 - L1MB1 LINE L1 -1 6167 5616 3763 211 101 51 chr6 4112911 4113283 -178301959 - L1M LINE L1 -1829 4337 3846 2779 127 83 22 chr6 4113293 4113798 -178301444 - L1MB4 LINE L1 -3 6177 5642 310 137 78 0 chr6 4113800 4113851 -178301391 + MSTD LTR MaLR 1 55 -373 1505 184 92 30 chr6 4115697 4116033 -178299209 + MSTD LTR MaLR 40 396 0 257 87 0 87 chr6 4116033 4116079 -178299163 - L1MB4 LINE L1 -539 5644 5603 * 5567 219 97 19 chr6 4116067 4118657 -178296585 - L1M4 LINE L1 -1462 4920 924 2001 142 3 7 chr6 4118657 4118960 -178296282 - AluSx SINE Alu -10 302 1 5567 219 97 19 chr6 4118960 4119143 -178296099 - L1M4 LINE L1 -5458 924 757 349 303 67 26 chr6 4119774 4120014 -178295228 - L1MDb LINE L1 -5484 586 323 294 104 42 0 chr6 4120145 4120193 -178295049 + MADE1 DNA Mariner 1 50 -30 345 331 33 11 chr6 4120240 4120424 -178294818 - L1MDb LINE L1 -5882 188 1 306 311 34 17 chr6 4120424 4120543 -178294699 + MIR SINE MIR 47 167 -95 2234 103 10 0 chr6 4121749 4122041 -178293201 + AluSx SINE Alu 1 295 -17 2145 114 0 10 chr6 4122123 4122422 -178292820 - AluSx SINE Alu -16 296 1 316 250 16 12 chr6 4122462 4122588 -178292654 - MER5A DNA MER1_type 0 189 10 2191 116 0 3 chr6 4123716 4124010 -178291232 - AluSx SINE Alu -19 293 1 2114 123 0 7 chr6 4124998 4125299 -178289943 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4125347 4125372 -178289870 + AT_rich Low_complexity Low_complexity 1 25 0 2413 216 46 110 chr6 4125411 4125848 -178289394 - L1ME2 LINE L1 -49 6115 5651 393 100 0 57 chr6 4125848 4125873 -178289369 + L1MA9 LINE L1 6247 6272 -40 1928 186 20 12 chr6 4125873 4126123 -178289119 - MER7A DNA MER2_type -2693 345 92 2107 108 38 0 chr6 4126123 4126410 -178288832 + AluSx SINE Alu 1 298 -14 1928 186 20 12 chr6 4126410 4126503 -178288739 - MER7A DNA MER2_type -2946 92 1 393 100 0 57 chr6 4126503 4126547 -178288695 + L1MA9 LINE L1 6272 6312 0 2413 216 46 110 chr6 4126547 4127106 -178288136 - L1ME2 LINE L1 -513 5651 5176 374 219 44 11 chr6 4127773 4127888 -178287354 + MIR SINE MIR 19 146 -63 2340 105 0 0 chr6 4127895 4128199 -178287043 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4128239 4128279 -178286963 - Alu SINE Alu -8 125 86 1444 119 0 0 chr6 4128281 4128474 -178286768 - AluSq SINE Alu -120 193 1 1950 112 0 18 chr6 4128838 4129114 -178286128 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4129216 4129288 -178285954 + (TA)n Simple_repeat Simple_repeat 2 79 0 1930 123 27 17 chr6 4129363 4129655 -178285587 + AluSx SINE Alu 1 295 -17 432 239 22 46 chr6 4130189 4130408 -178284834 + L1ME4a LINE L1 5709 6121 0 334 223 87 19 chr6 4130448 4130551 -178284691 + MIR3 SINE MIR 85 194 -14 659 310 64 74 chr6 4131943 4132481 -178282761 - L2 LINE L2 -2 3270 2733 1738 251 41 21 chr6 4132492 4133007 -178282235 - L1ME2 LINE L1 -8 6156 5632 2006 116 0 0 chr6 4133083 4133350 -178281892 - AluSg SINE Alu -2 308 42 182 292 31 131 chr6 4133677 4133807 -178281435 - L2 LINE L2 -1 3271 3155 1981 164 33 9 chr6 4134247 4134583 -178280659 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4134768 4134805 -178280437 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1982 132 17 3 chr6 4134805 4135092 -178280150 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4135096 4135273 -178279969 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4137190 4137215 -178278027 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4137253 4137565 -178277677 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4137731 4138053 -178277189 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4138313 4138443 -178276799 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4138443 4138742 -178276500 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4138742 4139015 -178276227 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4141151 4141900 -178273342 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4142182 4142212 -178273030 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4142410 4142486 -178272756 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4142596 4142889 -178272353 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4143200 4143418 -178271824 - LTR37B LTR ERV1 -42 426 197 325 297 44 100 chr6 4144273 4144791 -178270451 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 4145811 4145837 -178269405 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 4146237 4146312 -178268930 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 4146312 4146652 -178268590 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 4146652 4147216 -178268026 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 4147226 4147479 -178267763 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 4147491 4147797 -178267445 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 4147798 4147967 -178267275 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 4147982 4148566 -178266676 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 4148566 4148589 -178266653 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 4148589 4148606 -178266636 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 4148606 4148648 -178266594 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 4148648 4148901 -178266341 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 4148901 4148931 -178266311 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 4148931 4149299 -178265943 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 4149299 4150490 -178264752 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 4151127 4151560 -178263682 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 4152065 4152257 -178262985 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 4152258 4152347 -178262895 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 4152347 4152795 -178262447 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 4152795 4152931 -178262311 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 4153116 4153326 -178261916 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 4153311 4153487 -178261755 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 4153487 4153523 -178261719 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 4153523 4153797 -178261445 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 4153803 4154104 -178261138 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 4154130 4154580 -178260662 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 4154580 4156768 -178258474 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 4156770 4156942 -178258300 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 4157074 4157115 -178258127 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 4157237 4158804 -178256438 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 4159005 4159036 -178256206 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 4159182 4159221 -178256021 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 4160083 4160199 -178255043 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 4160729 4160845 -178254397 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 4161095 4161198 -178254044 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 4162263 4162359 -178252883 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 4162726 4163156 -178252086 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 4163922 4164022 -178251220 + L2 LINE L2 3148 3272 0 2392 65 0 3 chr6 4164127 4164418 -178250824 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 4164480 4164592 -178250650 + L2 LINE L2 2643 2757 -557 2060 132 134 11 chr6 4165714 4166094 -178249148 + MSTA LTR MaLR 1 427 -1 245 364 98 8 chr6 4166158 4166422 -178248820 - L2 LINE L2 -9 3263 2976 1792 154 57 0 chr6 4166939 4167218 -178248024 - AluSg SINE Alu -14 296 2 1066 214 81 45 chr6 4167815 4168147 -178247095 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 4171376 4171562 -178243680 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 4171565 4171868 -178243374 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 4171892 4171959 -178243283 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 4172118 4172449 -178242793 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 4172449 4172708 -178242534 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 4172718 4172751 -178242491 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 4172756 4172791 -178242451 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 4172794 4173002 -178242240 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 4173002 4173304 -178241938 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 4173304 4174519 -178240723 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 4175640 4175926 -178239316 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 4176108 4176185 -178239057 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 4176255 4176396 -178238846 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 4176396 4176849 -178238393 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 4177011 4177308 -178237934 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 4178518 4178541 -178236701 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 4179204 4179275 -178235967 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 4179358 4179945 -178235297 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 4179869 4180099 -178235143 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 4180099 4180392 -178234850 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 4180533 4180841 -178234401 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 4180891 4181086 -178234156 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 4181165 4181369 -178233873 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 4181370 4181493 -178233749 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 4181495 4181820 -178233422 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 4181864 4182469 -178232773 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 4182455 4182585 -178232657 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 4183985 4184074 -178231168 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 4184641 4185114 -178230128 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 4185484 4185734 -178229508 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 4185734 4185898 -178229344 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 4185898 4186119 -178229123 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 4186324 4186575 -178228667 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 4186998 4187112 -178228130 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 4187140 4187852 -178227390 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 4187849 4188591 -178226651 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 4188679 4189065 -178226177 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 4189445 4189768 -178225474 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 4189767 4189879 -178225363 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 4190210 4190575 -178224667 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 4190569 4190706 -178224536 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 4190820 4190934 -178224308 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 4191053 4191729 -178223513 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 4191753 4191881 -178223361 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 4191930 4191955 -178223287 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 4192097 4192325 -178222917 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 4192653 4192834 -178222408 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 4192836 4193017 -178222225 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 4193040 4193249 -178221993 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 4193947 4194267 -178220975 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 4194283 4194439 -178220803 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 4194479 4194541 -178220701 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 4196158 4197523 -178217719 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 4199145 4199197 -178216045 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 4199203 4200271 -178214971 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 4200557 4200854 -178214388 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 4200854 4201140 -178214102 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 4201514 4202770 -178212472 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 4202895 4202917 -178212325 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 4202962 4203086 -178212156 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 4203201 4203661 -178211581 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 4203744 4203798 -178211444 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 4203798 4204073 -178211169 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 4204073 4204143 -178211099 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 4204191 4210312 -178204930 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 4210315 4210577 -178204665 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 4210650 4210944 -178204298 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 4211014 4211278 -178203964 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 4212766 4212888 -178202354 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 4212975 4213263 -178201979 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 4214253 4214302 -178200940 + L2 LINE L2 3247 3296 -17 1972 175 153 0 chr6 4214918 4215318 -178199924 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4215340 4215362 -178199880 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4215485 4215541 -178199701 + AT_rich Low_complexity Low_complexity 1 56 0 197 308 38 60 chr6 4216030 4216163 -178199079 + L2 LINE L2 3141 3270 -2 1492 147 88 26 chr6 4217409 4217682 -178197560 + AluJo SINE Alu 1 290 -22 740 249 23 17 chr6 4217872 4218049 -178197193 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4218097 4218147 -178197095 + (CA)n Simple_repeat Simple_repeat 1 50 0 2464 137 16 29 chr6 4218774 4219154 -178196088 - THE1C LTR MaLR 0 375 1 10878 107 31 45 chr6 4219156 4220757 -178194485 - THE1C-int LTR MaLR -2 1578 1 2453 120 29 27 chr6 4220757 4221131 -178194111 - THE1C LTR MaLR 0 375 1 1260 193 90 43 chr6 4221221 4221522 -178193720 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4222014 4222039 -178193203 + AT_rich Low_complexity Low_complexity 1 25 0 3319 159 3 52 chr6 4222788 4223234 -178192008 + MER73 LTR ERVL 15 422 -222 2312 89 3 29 chr6 4223234 4223548 -178191694 - AluY SINE Alu -5 306 1 3319 159 3 52 chr6 4223548 4223735 -178191507 + MER73 LTR ERVL 422 617 -27 1325 149 14 0 chr6 4223736 4223944 -178191298 - THE1C LTR MaLR 0 375 165 330 252 43 0 chr6 4224123 4224238 -178191004 - THE1C LTR MaLR -246 129 10 535 216 7 14 chr6 4224252 4224391 -178190851 - THE1C-int LTR MaLR -4 1576 1439 * 7247 119 34 41 chr6 4224386 4225661 -178189581 - THE1C-int LTR MaLR -367 1213 3 2810 102 11 3 chr6 4225663 4226035 -178189207 - THE1C LTR MaLR 0 375 1 350 301 175 35 chr6 4226341 4226570 -178188672 - MIR SINE MIR 0 262 2 678 240 17 28 chr6 4226579 4226758 -178188484 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4226794 4226849 -178188393 + (CA)n Simple_repeat Simple_repeat 2 56 0 520 321 75 11 chr6 4227179 4227459 -178187783 + MER102a DNA MER1_type 1 298 -32 2393 127 36 30 chr6 4228051 4228413 -178186829 + THE1B LTR MaLR 1 364 0 12321 90 13 10 chr6 4228413 4229989 -178185253 + THE1B-int LTR MaLR 1 1580 0 1069 169 55 32 chr6 4229991 4230210 -178185032 + THE1B LTR MaLR 3 226 -149 494 249 15 88 chr6 4230221 4230426 -178184816 + LTR4 LTR ERV1 10 199 -397 394 267 48 30 chr6 4230619 4230784 -178184458 + LTR4 LTR ERV1 318 485 -111 8681 163 27 27 chr6 4230795 4232405 -178182837 + L1P LINE L1 11 1620 -4526 1661 155 79 65 chr6 4232420 4232693 -178182549 + HERVL74 LTR ERVL 1243 1525 -4160 1908 128 0 21 chr6 4232693 4233003 -178182239 + AluSx SINE Alu 1 304 0 1661 155 79 65 chr6 4233003 4233095 -178182147 + HERVL74 LTR ERVL 1525 1614 -4071 1742 159 101 29 chr6 4233098 4233186 -178182056 + L1MA4 LINE L1 5642 5722 -578 1527 182 0 0 chr6 4233186 4233428 -178181814 + AluSx SINE Alu 1 242 -70 1742 159 101 29 chr6 4233428 4233459 -178181783 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4233459 4233507 -178181735 + (CA)n Simple_repeat Simple_repeat 2 49 0 1742 159 101 29 chr6 4233507 4233764 -178181478 + L1MA4 LINE L1 5749 6046 -254 953 143 0 0 chr6 4233767 4233900 -178181342 + FLAM_C SINE Alu 1 133 -10 787 309 77 3 chr6 4233924 4234290 -178180952 + L1ME LINE L1 4910 5302 -844 453 53 0 0 chr6 4234290 4234347 -178180895 - U2 snRNA snRNA -125 63 7 1731 41 0 0 chr6 4234347 4234543 -178180699 + L1PA5 LINE L1 5959 6154 0 408 230 29 7 chr6 4234545 4234703 -178180539 + L1ME LINE L1 5328 5486 -678 18806 127 20 56 chr6 4234716 4238086 -178177156 + L1P LINE L1 12 3260 -2886 19229 78 18 5 chr6 4238262 4241502 -178173740 + L1PA6 LINE L1 2878 6153 -1 350 165 87 58 chr6 4241502 4241605 -178173637 + LTR4 LTR ERV1 477 582 -14 * 826 175 75 12 chr6 4241600 4241760 -178173482 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4241997 4242041 -178173201 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 911 217 44 113 chr6 4242138 4242641 -178172601 + LTR37B LTR ERV1 1 468 0 1565 231 50 29 chr6 4242649 4243104 -178172138 - L1MC4 LINE L1 -96 7946 7482 715 240 0 0 chr6 4243591 4243720 -178171522 + FLAM_A SINE Alu 1 129 -4 2869 259 97 16 chr6 4244749 4245841 -178169401 - L1M4 LINE L1 -1824 4322 3143 1301 190 62 0 chr6 4245879 4246137 -178169105 - AluJo SINE Alu -38 274 1 454 237 0 0 chr6 4246206 4246345 -178168897 + L1M4 LINE L1 3047 3185 -2961 1099 281 101 14 chr6 4246824 4246932 -178168310 + HERV16 LTR ERVL 871 968 -4028 1919 60 0 9 chr6 4246932 4247164 -178168078 - AluY SINE Alu -14 297 68 1099 281 101 14 chr6 4247164 4247479 -178167763 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4247755 4247789 -178167453 + (TG)n Simple_repeat Simple_repeat 2 35 0 2533 108 57 5 chr6 4247892 4248262 -178166980 - L1PA11 LINE L1 -1 6173 5785 2255 125 3 0 chr6 4248268 4248579 -178166663 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4249564 4249589 -178165653 + AT_rich Low_complexity Low_complexity 1 25 0 2852 109 144 2 chr6 4249747 4250213 -178165029 - THE1C-int LTR MaLR -1045 535 4 1974 150 64 25 chr6 4250216 4250577 -178164665 - THE1C LTR MaLR 0 375 1 4443 195 19 20 chr6 4250607 4250932 -178164310 - L1MA9 LINE L1 -161 6151 5827 2241 103 0 16 chr6 4250932 4251242 -178164000 - AluY SINE Alu -6 305 1 4443 195 19 20 chr6 4251242 4251275 -178163967 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4251275 4251316 -178163926 + (CA)n Simple_repeat Simple_repeat 2 42 0 4443 195 19 20 chr6 4251316 4251761 -178163481 - L1MA9 LINE L1 -517 5795 5351 2344 101 0 0 chr6 4251761 4252058 -178163184 - AluSx SINE Alu -15 297 1 2421 74 0 3 chr6 4252063 4252362 -178162880 - AluY SINE Alu -13 298 1 4443 195 19 20 chr6 4252362 4252945 -178162297 - L1MA9 LINE L1 -965 5347 4765 930 221 67 0 chr6 4252947 4253142 -178162100 - AluJb SINE Alu -23 289 82 204 327 47 4 chr6 4303408 4303502 -178111740 + MIR SINE MIR 3 106 -102 574 274 177 23 chr6 4303513 4303903 -178111339 + MLT1J2 LTR MaLR 1 450 0 2473 57 0 0 chr6 4304017 4304315 -178110927 + AluY SINE Alu 2 299 -12 356 259 144 14 chr6 4304644 4304783 -178110459 - L1ME4a LINE L1 -1 6120 5964 609 235 86 29 chr6 4304888 4305131 -178110111 - L1ME4a LINE L1 -177 5944 5688 2599 194 20 20 chr6 4305379 4305885 -178109357 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4306024 4306184 -178109058 + CT-rich Low_complexity Low_complexity 4 166 0 4471 184 40 25 chr6 4306202 4307817 -178107425 - L1MB7 LINE L1 -16 6168 4530 2172 118 0 0 chr6 4308084 4308389 -178106853 + AluSq SINE Alu 1 305 -8 196 284 28 110 chr6 4308510 4308619 -178106623 + MIR SINE MIR 36 135 -73 186 303 67 0 chr6 4310379 4310468 -178104774 - L2 LINE L2 -57 3215 3121 192 366 113 7 chr6 4310549 4310691 -178104551 - L2 LINE L2 -169 3103 2947 204 186 17 85 chr6 4310920 4310979 -178104263 - L2 LINE L2 -488 2826 2772 310 290 86 38 chr6 4311080 4311266 -178103976 + MER102b DNA MER1_type 126 320 -21 550 307 199 28 chr6 4312431 4312454 -178102788 - L2 LINE L2 0 3272 3254 1504 256 103 2 chr6 4312454 4312900 -178102342 - LTR16C LTR ERVL 0 491 1 550 307 199 28 chr6 4312900 4313202 -178102040 - L2 LINE L2 -18 3254 2891 2335 68 0 0 chr6 4313203 4313497 -178101745 + AluY SINE Alu 1 294 -17 1816 167 7 0 chr6 4313890 4314196 -178101046 - Tigger3(Golem) DNA MER2_type -1 3028 2721 385 231 77 0 chr6 4314188 4314266 -178100976 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 781 220 146 14 chr6 4314294 4314564 -178100678 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4314624 4314800 -178100442 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 213 285 149 22 chr6 4316182 4316321 -178098921 - L2 LINE L2 -174 3098 2941 629 269 83 25 chr6 4316444 4316681 -178098561 - MIR SINE MIR 0 262 14 332 297 51 8 chr6 4316721 4316839 -178098403 + MER5A DNA MER1_type 43 165 -24 492 353 22 11 chr6 4316930 4317114 -178098128 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4317179 4317217 -178098025 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4317217 4317534 -178097708 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4317534 4317960 -178097282 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4318038 4318688 -178096554 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4318688 4318866 -178096376 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4318866 4319162 -178096080 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4319162 4319300 -178095942 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4319300 4319851 -178095391 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4320129 4320352 -178094890 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4320397 4321142 -178094100 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4321348 4321472 -178093770 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4321494 4321815 -178093427 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4321830 4322042 -178093200 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4322044 4322263 -178092979 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4323975 4324159 -178091083 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4324176 4324479 -178090763 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4325058 4325285 -178089957 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4325678 4326401 -178088841 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4327468 4327531 -178087711 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4327735 4328317 -178086925 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4328632 4328735 -178086507 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4329678 4329699 -178085543 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4331113 4331401 -178083841 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4331454 4331530 -178083712 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4332331 4332570 -178082672 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4333041 4333068 -178082174 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4333415 4333668 -178081574 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4333669 4334168 -178081074 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4334226 4334640 -178080602 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4334640 4335230 -178080012 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4335230 4335387 -178079855 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4335672 4335937 -178079305 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4336179 4336471 -178078771 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4336688 4336836 -178078406 - MER97a DNA MER1_type? -270 624 483 2381 94 7 0 chr6 4336860 4337168 -178078074 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4337168 4337547 -178077695 - MER97c DNA MER1_type? -689 401 8 387 202 34 0 chr6 4337640 4337729 -178077513 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4337729 4339464 -178075778 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4339464 4339976 -178075266 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4339992 4341932 -178073310 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4341933 4342321 -178072921 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4342844 4343129 -178072113 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4344468 4344641 -178070601 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4345800 4345882 -178069360 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4345904 4346723 -178068519 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4347351 4347452 -178067790 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4347526 4347698 -178067544 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4347746 4348021 -178067221 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4350716 4350868 -178064374 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4350998 4351240 -178064002 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4352061 4352359 -178062883 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4352367 4354119 -178061123 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4354190 4354407 -178060835 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4354612 4355322 -178059920 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4355585 4355703 -178059539 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4355782 4355910 -178059332 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4356185 4356642 -178058600 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4356655 4356847 -178058395 + HAL1 LINE L1 1560 1769 -738 43319 34 25 1 chr6 4356908 4362913 -178052329 - L1PA3 LINE L1 0 6155 2 324 274 110 40 chr6 4362997 4363351 -178051891 + L1M4 LINE L1 4132 4510 -1636 2555 270 148 31 chr6 4363359 4364544 -178050698 - L2 LINE L2 -701 2613 1291 314 347 57 6 chr6 4364545 4364721 -178050521 + L1M4 LINE L1 4961 5145 -1001 4856 152 73 42 chr6 4364746 4365597 -178049645 + LTR13 LTR ERVK 1 885 -69 2319 91 0 3 chr6 4365597 4365895 -178049347 - AluY SINE Alu -14 297 1 4856 152 73 42 chr6 4365895 4365968 -178049274 + LTR13 LTR ERVK 885 954 0 12697 122 39 6 chr6 4365973 4368259 -178046983 - Tigger4(Zombi) DNA MER2_type 0 2731 330 549 0 0 0 chr6 4368259 4368320 -178046922 + (CA)n Simple_repeat Simple_repeat 2 62 0 12697 122 39 6 chr6 4368320 4368661 -178046581 - Tigger4(Zombi) DNA MER2_type -2401 330 2 1812 312 120 18 chr6 4368676 4369665 -178045577 + L2 LINE L2 1812 2901 -413 427 300 91 36 chr6 4369706 4369926 -178045316 + L2 LINE L2 3014 3245 -68 2116 226 100 26 chr6 4370058 4371217 -178044025 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4371457 4371548 -178043694 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4371582 4371627 -178043615 + GA-rich Low_complexity Low_complexity 1 46 0 308 347 82 33 chr6 4372227 4372472 -178042770 - L2 LINE L2 -10 3262 3006 500 324 24 34 chr6 4372692 4372899 -178042343 + MIR SINE MIR 36 240 -22 1229 255 86 14 chr6 4373676 4374111 -178041131 - MLT1F LTR MaLR -18 524 24 1187 120 0 0 chr6 4374396 4374586 -178040656 - AluSg/x SINE Alu 0 316 127 244 292 124 29 chr6 4374952 4375089 -178040153 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4375533 4375692 -178039550 + CT-rich Low_complexity Low_complexity 1 159 0 2346 100 0 10 chr6 4377053 4377364 -178037878 - AluY SINE Alu -3 308 1 639 282 29 28 chr6 4378201 4378566 -178036676 + LTR16B LTR ERVL 34 451 -13 278 263 185 24 chr6 4378605 4378810 -178036432 - L2 LINE L2 -529 2785 2548 368 259 70 49 chr6 4378897 4379040 -178036202 + MIR3 SINE MIR 20 165 -43 366 181 14 0 chr6 4379081 4379153 -178036089 - L1MB3 LINE L1 -23 6160 6088 2393 166 32 11 chr6 4379280 4379749 -178035493 - L1MB3 LINE L1 -93 6090 5612 200 152 0 0 chr6 4380068 4380101 -178035141 + MIR3 SINE MIR 167 199 -9 346 325 0 9 chr6 4381065 4381179 -178034063 + LTR16A LTR ERVL 25 137 -313 939 250 118 49 chr6 4381815 4382247 -178032995 + LTR16B LTR ERVL 1 462 -2 214 232 29 58 chr6 4382778 4382847 -178032395 + L2 LINE L2 3132 3198 -74 1971 144 44 0 chr6 4382916 4383214 -178032028 - AluSx SINE Alu -1 311 1 335 271 34 126 chr6 4383401 4383751 -178031491 - L2 LINE L2 -37 3235 2918 5803 107 38 5 chr6 4384053 4384412 -178030830 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4384412 4384455 -178030787 + (TG)n Simple_repeat Simple_repeat 2 44 0 5803 107 38 5 chr6 4384455 4385019 -178030223 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4385805 4385869 -178029373 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3293 32 0 0 chr6 4386104 4386484 -178028758 + L1PA3 LINE L1 5775 6154 -1 403 232 13 73 chr6 4387599 4387750 -178027492 + MIR3 SINE MIR 10 151 -57 226 279 15 15 chr6 4387954 4388022 -178027220 - L2 LINE L2 0 3313 3246 2533 146 18 18 chr6 4389667 4389827 -178025415 - L1MB3 LINE L1 -2 6181 6022 1689 176 63 39 chr6 4389827 4390208 -178025034 - MLT1B LTR MaLR 0 390 1 2533 146 18 18 chr6 4390208 4390485 -178024757 - L1MB3 LINE L1 -160 6023 5744 249 333 23 0 chr6 4390531 4390618 -178024624 + L2 LINE L2 3184 3272 0 239 281 31 62 chr6 4390634 4390730 -178024512 - MIR SINE MIR -76 186 94 1073 189 19 0 chr6 4390982 4391194 -178024048 + MER20 DNA MER1_type 1 216 -3 513 260 73 50 chr6 4391767 4391986 -178023256 - MIR SINE MIR -14 248 25 1896 160 47 25 chr6 4392088 4392550 -178022692 - MLT2B1 LTR ERVL -1 514 1 814 217 84 57 chr6 4393076 4393408 -178021834 - LTR16A1 LTR ERVL 0 457 117 750 264 11 0 chr6 4396030 4396204 -178019038 - MER5A DNA MER1_type 0 189 14 337 273 102 8 chr6 4396311 4396439 -178018803 - MIR SINE MIR -69 193 54 261 259 71 0 chr6 4396432 4396517 -178018725 - MER5B DNA MER1_type -87 91 1 * 359 292 31 8 chr6 4396888 4397018 -178018224 - LTR33 LTR ERVL 0 521 389 435 255 64 64 chr6 4397051 4397134 -178018108 - LTR33 LTR ERVL -250 271 189 865 241 45 5 chr6 4397134 4397333 -178017909 + MER63A DNA MER1_type 4 210 0 435 255 64 64 chr6 4397333 4397453 -178017789 - LTR33 LTR ERVL -331 190 68 234 281 18 0 chr6 4397849 4397906 -178017336 - L2 LINE L2 -6 3266 3209 489 237 168 5 chr6 4397975 4398165 -178017077 - LTR33A LTR ERVL -5 518 298 271 242 216 20 chr6 4398223 4398376 -178016866 - LTR33A LTR ERVL -339 184 2 2750 163 25 48 chr6 4398548 4398614 -178016628 - MLT2B2 LTR ERVL -2 513 447 2075 111 7 14 chr6 4398614 4398933 -178016309 - AluSx SINE Alu 0 317 1 2750 163 25 48 chr6 4398933 4399387 -178015855 - MLT2B2 LTR ERVL -68 447 3 317 272 39 19 chr6 4399629 4399732 -178015510 - MIR SINE MIR -67 141 37 561 262 13 13 chr6 4400064 4400213 -178015029 + MER63A DNA MER1_type 60 208 -2 753 224 13 69 chr6 4400482 4400714 -178014528 + MIR SINE MIR 44 262 0 520 296 96 50 chr6 4400841 4401121 -178014121 - L3 LINE CR1 -14 1563 1271 189 172 0 0 chr6 4401421 4401450 -178013792 - L3 LINE CR1 -303 1274 1246 305 256 80 16 chr6 4402775 4402900 -178012342 + L2 LINE L2 2132 2264 -1050 1756 140 146 3 chr6 4402984 4403327 -178011915 + Ricksha DNA DNA 30 421 -2825 250 288 85 25 chr6 4403588 4403706 -178011536 + L2 LINE L2 2648 2772 -542 374 244 17 122 chr6 4403714 4403839 -178011403 - MIR SINE MIR -4 258 154 2408 102 0 7 chr6 4403839 4404144 -178011098 - AluSx SINE Alu -9 303 1 374 244 17 122 chr6 4404144 4404190 -178011052 - MIR SINE MIR -108 154 105 237 305 40 46 chr6 4404798 4404949 -178010293 + L2 LINE L2 2919 3068 -204 316 245 91 42 chr6 4405612 4405755 -178009487 + MIR SINE MIR 83 232 -30 218 203 31 62 chr6 4405729 4405793 -178009449 + L2 LINE L2 3252 3313 0 * 2087 123 17 17 chr6 4406091 4406391 -178008851 + AluSq SINE Alu 1 300 -13 266 264 47 28 chr6 4407172 4407278 -178007964 - L3 LINE CR1 -390 1187 1080 267 289 197 5 chr6 4408587 4408747 -178006495 - MIR SINE MIR -50 212 15 200 326 84 21 chr6 4408906 4409001 -178006241 - MIR3 SINE MIR -102 106 6 302 235 47 12 chr6 4409013 4409098 -178006144 - MIR SINE MIR -69 139 52 385 234 171 0 chr6 4410149 4410260 -178004982 - MER91C DNA MER1_type -10 130 1 1440 149 54 0 chr6 4411510 4411751 -178003491 + AluJo SINE Alu 48 301 -11 1723 213 57 31 chr6 4412036 4412481 -178002761 + LTR10B LTR ERV1 1 547 0 8575 243 53 71 chr6 4412481 4415717 -177999525 + HERVI LTR ERV1 1 3177 -4608 187 276 0 95 chr6 4415724 4415829 -177999413 - L3b LINE CR1 -283 1300 1206 9236 221 6 18 chr6 4415833 4417802 -177997440 + BaEV-int LTR ERV1 4419 6364 -285 696 333 56 0 chr6 4418408 4418639 -177996603 - MIR SINE MIR -5 257 14 245 252 37 37 chr6 4418667 4418774 -177996468 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4418879 4418966 -177996276 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4418970 4419203 -177996039 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4419342 4419416 -177995826 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4419725 4419861 -177995381 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4419912 4420012 -177995230 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4420087 4420332 -177994910 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4420833 4421046 -177994196 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4421047 4421105 -177994137 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4421105 4421420 -177993822 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4421421 4421511 -177993731 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4421511 4421834 -177993408 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4422003 4422047 -177993195 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4422521 4422675 -177992567 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4423762 4425073 -177990169 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4425073 4425197 -177990045 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4425207 4425255 -177989987 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4425373 4425394 -177989848 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4425882 4425995 -177989247 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4426313 4426547 -177988695 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4426602 4426771 -177988471 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4427199 4427320 -177987922 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4427415 4427486 -177987756 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4429507 4429688 -177985554 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4429722 4429778 -177985464 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4430652 4430683 -177984559 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4431346 4431401 -177983841 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4433158 4433279 -177981963 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4433423 4433447 -177981795 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4433507 4436589 -177978653 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4436602 4436629 -177978613 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4436629 4439259 -177975983 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4439259 4439552 -177975690 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4439552 4440313 -177974929 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4440450 4440513 -177974729 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4440990 4441050 -177974192 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4441194 4441222 -177974020 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4441353 4441512 -177973730 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4442057 4442134 -177973108 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4442146 4442198 -177973044 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4442198 4442475 -177972767 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4442483 4442615 -177972627 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4442617 4442703 -177972539 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4442706 4442794 -177972448 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4442794 4442854 -177972388 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4443095 4443257 -177971985 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4443282 4443360 -177971882 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4443965 4444338 -177970904 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4444408 4444537 -177970705 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4444540 4444708 -177970534 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4444942 4445323 -177969919 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4445520 4446360 -177968882 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4446360 4446656 -177968586 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4446656 4448105 -177967137 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4448113 4449356 -177965886 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4449356 4449664 -177965578 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4449664 4450010 -177965232 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4450010 4450365 -177964877 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4450365 4453021 -177962221 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4453021 4453334 -177961908 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4453334 4454092 -177961150 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4454162 4454469 -177960773 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4456116 4456236 -177959006 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4456236 4456698 -177958544 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4456780 4456868 -177958374 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4456869 4457036 -177958206 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4457045 4457099 -177958143 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4457495 4458015 -177957227 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4458416 4458565 -177956677 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4458816 4458975 -177956267 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4458975 4459322 -177955920 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4459322 4459345 -177955897 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4459784 4460144 -177955098 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4460552 4460655 -177954587 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4461056 4461368 -177953874 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4461620 4462065 -177953177 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4462500 4462770 -177952472 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4463051 4463544 -177951698 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4463702 4463932 -177951310 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4464420 4464461 -177950781 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4464705 4464739 -177950503 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4464745 4465533 -177949709 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4466315 4467149 -177948093 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4467149 4467182 -177948060 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4467182 4467978 -177947264 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4467978 4468255 -177946987 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4468302 4468597 -177946645 - L1PB1 LINE L1 -1 6150 5859 2300 82 38 0 chr6 4468597 4468888 -177946354 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4469040 4469103 -177946139 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4469119 4469199 -177946043 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4469206 4469282 -177945960 - L2 LINE L2 -2382 932 856 991 255 111 12 chr6 4469291 4469616 -177945626 - MLT1I LTR MaLR -25 384 28 2411 283 27 35 chr6 4469617 4470443 -177944799 - L2 LINE L2 -2479 835 17 284 238 38 12 chr6 4470751 4470831 -177944411 - L2 LINE L2 -1877 1437 1356 716 252 59 64 chr6 4470844 4471224 -177944018 - L1M4 LINE L1 -1602 4544 4165 2336 109 0 3 chr6 4471224 4471535 -177943707 - AluSg SINE Alu 0 310 1 716 252 59 64 chr6 4471535 4471594 -177943648 - L1M4 LINE L1 -1981 4165 4107 289 287 39 62 chr6 4471606 4471864 -177943378 - L1MEd LINE L1 -5164 955 704 771 216 30 24 chr6 4471865 4472032 -177943210 - FRAM SINE Alu -16 160 1 267 279 51 0 chr6 4472032 4472111 -177943131 - L1MEd LINE L1 -5416 703 621 4483 169 52 6 chr6 4472244 4473064 -177942178 - L1MD1 LINE L1 0 6242 5385 1808 37 0 5 chr6 4473276 4473492 -177941750 - L1PA5 LINE L1 -1 6153 5939 1430 251 48 5 chr6 4473492 4473910 -177941332 - L1MD1 LINE L1 -745 5401 4966 1250 276 59 46 chr6 4474083 4474644 -177940598 + Charlie7 DNA MER1_type 120 687 -1925 486 239 39 72 chr6 4474660 4474840 -177940402 - MLT1J LTR MaLR -12 499 326 294 164 0 0 chr6 4474841 4474902 -177940340 - L1MC3 LINE L1 -727 7058 6998 * 854 54 1 1 chr6 4474877 4474902 -177940340 + L1P LINE L1 5225 5249 -897 1384 19 0 0 chr6 4474902 4475059 -177940183 - L1PA4 LINE L1 -5 6150 5994 854 54 1 1 chr6 4475059 4475163 -177940079 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4475928 4475948 -177939294 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4476778 4476883 -177938359 + (TA)n Simple_repeat Simple_repeat 1 108 0 281 299 132 29 chr6 4477196 4477370 -177937872 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4477516 4477544 -177937698 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1217 55 0 0 chr6 4477544 4477689 -177937553 - MER107 DNA MER1_type -52 145 1 424 236 9 9 chr6 4477729 4477835 -177937407 + MER5B DNA MER1_type 73 178 0 327 307 9 0 chr6 4478108 4478222 -177937020 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4478390 4478412 -177936830 + AT_rich Low_complexity Low_complexity 1 22 0 819 139 12 78 chr6 4478757 4478923 -177936319 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4478958 4479030 -177936212 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4479129 4479172 -177936070 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1936 254 75 34 chr6 4479437 4480295 -177934947 + L1MEc LINE L1 499 1391 -5005 259 259 76 0 chr6 4481106 4481237 -177934005 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4481560 4481639 -177933603 + (TAA)n Simple_repeat Simple_repeat 1 83 0 240 324 59 0 chr6 4482119 4482221 -177933021 - L2 LINE L2 -932 2382 2275 247 296 241 0 chr6 4482852 4482960 -177932282 - MIR SINE MIR -77 185 52 215 274 71 36 chr6 4483049 4483133 -177932109 - MIR SINE MIR -58 204 118 504 270 77 62 chr6 4483974 4484233 -177931009 - MLT1J LTR MaLR -4 507 245 1837 192 25 25 chr6 4484578 4484943 -177930299 - MLT1A1 LTR MaLR 0 365 1 191 255 177 21 chr6 4484945 4485086 -177930156 - L2 LINE L2 -11 3302 3140 691 241 294 0 chr6 4486041 4486361 -177928881 + Charlie2a DNA MER1_type 7 420 -2442 861 246 29 14 chr6 4486395 4486671 -177928571 + Charlie2a DNA MER1_type 738 1017 -1845 410 182 0 23 chr6 4486668 4486756 -177928486 + Charlie2a DNA MER1_type 2748 2833 -29 * 248 278 0 0 chr6 4489128 4489200 -177926042 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 229 216 0 0 chr6 4490545 4490596 -177924646 + MER116 DNA Mariner 25 75 -5 1792 175 3 19 chr6 4490683 4490991 -177924251 + AluJo SINE Alu 1 303 -9 675 294 58 39 chr6 4491000 4491381 -177923861 + L1ME4a LINE L1 5377 5764 -357 352 327 62 34 chr6 4491386 4491594 -177923648 + MIR SINE MIR 13 226 -36 319 212 73 53 chr6 4491772 4491923 -177923319 + L1ME4a LINE L1 5964 6117 -4 1744 140 135 83 chr6 4492325 4492769 -177922473 + MLT1C LTR MaLR 1 467 0 1569 167 50 83 chr6 4493271 4493655 -177921587 + MLT1A2 LTR MaLR 4 374 0 601 274 71 56 chr6 4493720 4493920 -177921322 - MLT1J LTR MaLR -238 273 67 2218 111 20 0 chr6 4493920 4494226 -177921016 - AluSx SINE Alu 0 312 1 601 274 71 56 chr6 4494226 4494277 -177920965 - MLT1J LTR MaLR -444 67 18 706 270 35 66 chr6 4494942 4495383 -177919859 + LTR35 LTR ERV1 134 556 0 2248 106 0 28 chr6 4496141 4496462 -177918780 - AluSq SINE Alu -1 312 1 265 200 18 0 chr6 4496708 4496763 -177918479 + L2 LINE L2 3257 3312 -1 340 234 19 37 chr6 4497254 4497361 -177917881 - MER5A DNA MER1_type -80 109 5 3655 7 0 3 chr6 4497575 4498118 -177917124 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4498122 4498176 -177917066 + A-rich Low_complexity Low_complexity 1 55 0 413 151 0 27 chr6 4498677 4498750 -177916492 - MER20 DNA MER1_type 0 219 149 4586 100 14 5 chr6 4498750 4499388 -177915854 - LTR9B LTR ERV1 0 644 1 3482 128 16 15 chr6 4499401 4499947 -177915295 + LTR10A LTR ERV1 1 547 -62 726 154 0 99 chr6 4499958 4500120 -177915122 - MER20 DNA MER1_type -73 146 1 299 217 85 40 chr6 4501585 4501735 -177913507 + L1ME4a LINE L1 5698 5854 -267 352 276 20 53 chr6 4501773 4501925 -177913317 + L1ME4a LINE L1 5975 6121 0 1102 189 112 18 chr6 4501964 4502461 -177912781 + MLT1E1 LTR MaLR 3 654 0 303 319 62 35 chr6 4502739 4502996 -177912246 + L2 LINE L2 1107 1370 -1944 4938 100 10 13 chr6 4503093 4503786 -177911456 - LTR8 LTR ERV1 0 691 1 1119 265 21 4 chr6 4503944 4504223 -177911019 - MER87 LTR ERV1 -48 493 210 241 292 124 11 chr6 4504295 4504384 -177910858 - LTR8 LTR ERV1 -566 125 27 352 311 152 20 chr6 4504452 4505012 -177910230 + L2 LINE L2 1636 2269 -1045 203 348 24 40 chr6 4505012 4505190 -177910052 + L2 LINE L2 2457 2631 -683 695 202 60 24 chr6 4505190 4505358 -177909884 + MER5B DNA MER1_type 1 174 -4 203 348 24 40 chr6 4505358 4505432 -177909810 + L2 LINE L2 2631 2705 -609 768 235 0 20 chr6 4505441 4505594 -177909648 + AluJo SINE Alu 2 151 -161 1221 205 73 14 chr6 4505595 4505883 -177909359 - MLT1A2 LTR MaLR -66 308 4 444 285 8 0 chr6 4506399 4506529 -177908713 + MIR SINE MIR 88 218 -44 1069 152 12 0 chr6 4507471 4507635 -177907607 - AluJb SINE Alu -146 166 1 1862 205 21 36 chr6 4507638 4508111 -177907131 - L1 LINE L1 -817 5329 4864 777 185 25 37 chr6 4508114 4508276 -177906966 - MLT1A2 LTR MaLR -214 160 1 773 135 0 0 chr6 4509553 4509664 -177905578 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4511107 4511179 -177904063 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4511403 4511466 -177903776 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4511933 4511979 -177903263 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4511998 4512332 -177902910 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4512472 4512751 -177902491 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4513148 4513235 -177902007 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4513308 4513571 -177901671 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4513794 4514357 -177900885 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4515466 4515599 -177899643 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4515691 4516242 -177899000 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4516662 4517164 -177898078 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4517207 4517593 -177897649 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4519033 4519307 -177895935 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4519307 4519328 -177895914 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1013 191 5 5 chr6 4519543 4519731 -177895511 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4519890 4520024 -177895218 - MLT1L LTR MaLR -49 566 418 2533 69 0 0 chr6 4520422 4520725 -177894517 - AluSc SINE Alu -6 303 1 2464 74 0 16 chr6 4520727 4521036 -177894206 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4521038 4521060 -177894182 + AT_rich Low_complexity Low_complexity 1 22 0 1710 68 42 13 chr6 4521060 4521296 -177893946 - L1MA1 LINE L1 0 6302 6060 229 309 62 0 chr6 4522181 4522262 -177892980 + MIR SINE MIR 45 130 -78 623 231 158 60 chr6 4522262 4522630 -177892612 - MLT1J LTR MaLR 0 511 108 307 253 13 0 chr6 4522782 4522861 -177892381 - L2 LINE L2 0 3313 3234 2212 101 30 0 chr6 4523113 4523409 -177891833 + AluSc SINE Alu 1 305 -4 624 329 43 37 chr6 4523624 4523998 -177891244 + L1ME4a LINE L1 5518 5893 -228 2146 109 0 0 chr6 4524027 4524302 -177890940 - AluSg SINE Alu -34 276 2 255 361 30 15 chr6 4524862 4524995 -177890247 - L2 LINE L2 0 3272 3138 1910 159 3 0 chr6 4525225 4525520 -177889722 - AluJo SINE Alu -16 296 1 437 274 149 23 chr6 4525686 4525901 -177889341 - MIR SINE MIR -1 261 20 319 290 8 73 chr6 4525905 4526029 -177889213 - MIR SINE MIR -84 178 63 1055 200 33 79 chr6 4526562 4526892 -177888350 + L1MA10 LINE L1 6018 6332 -2 1333 197 24 14 chr6 4526911 4527200 -177888042 + L1MB8 LINE L1 5881 6172 -6 388 263 143 6 chr6 4527247 4527422 -177887820 + MARNA DNA Mariner 211 409 -177 466 264 104 42 chr6 4527551 4527744 -177887498 + MIR SINE MIR 58 262 0 191 173 58 19 chr6 4528277 4528329 -177886913 + L2 LINE L2 3207 3260 -12 2675 170 25 48 chr6 4529118 4529678 -177885564 - L1MA10 LINE L1 -1 6333 5787 1212 182 18 1 chr6 4529680 4529985 -177885257 - MER2 DNA MER2_type -1 344 1 1212 124 23 0 chr6 4529989 4530166 -177885076 - L1MA10 LINE L1 -552 5782 5602 2442 155 38 5 chr6 4530170 4530596 -177884646 - L1MB3 LINE L1 -2 6181 5742 420 265 8 17 chr6 4530603 4530720 -177884522 + Charlie8 DNA MER1_type 102 217 -2200 381 321 179 19 chr6 4531266 4531574 -177883668 - L3b LINE CR1 -125 1458 1102 554 222 163 7 chr6 4532104 4532257 -177882985 + MER5A DNA MER1_type 13 189 0 207 318 127 27 chr6 4532448 4532558 -177882684 - L2 LINE L2 -16 3256 3136 367 169 0 0 chr6 4532820 4532879 -177882363 + MER20 DNA MER1_type 159 217 -2 272 61 0 0 chr6 4532926 4532959 -177882283 + MLT1B LTR MaLR 1 33 -357 419 265 48 78 chr6 4532961 4533087 -177882155 + L2 LINE L2 1521 1642 -1672 1133 188 32 37 chr6 4533087 4533305 -177881937 + MER20 DNA MER1_type 1 217 -2 419 265 48 78 chr6 4533305 4533344 -177881898 + L2 LINE L2 1642 1681 -1633 1437 176 131 42 chr6 4533352 4533524 -177881718 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4533524 4533545 -177881697 + (TC)n Simple_repeat Simple_repeat 2 22 0 1437 176 131 42 chr6 4533545 4533730 -177881512 + MLT1B LTR MaLR 156 390 0 1491 249 29 31 chr6 4533757 4533813 -177881429 + L1ME1 LINE L1 5742 5797 -369 2008 137 67 25 chr6 4533813 4534171 -177881071 - THE1C LTR MaLR 0 375 3 10189 125 26 38 chr6 4534173 4535768 -177879474 - THE1C-int LTR MaLR 0 1580 4 1719 146 109 34 chr6 4535771 4536120 -177879122 - THE1C LTR MaLR 0 375 1 1491 249 29 31 chr6 4536120 4536477 -177878765 + L1ME1 LINE L1 5800 6161 -5 1201 290 172 18 chr6 4536519 4537359 -177877883 + L2 LINE L2 1706 2686 -628 1879 186 93 11 chr6 4537359 4537725 -177877517 + MSTD LTR MaLR 1 396 0 1201 290 172 18 chr6 4537725 4537757 -177877485 + L2 LINE L2 2686 2712 -602 2229 95 3 0 chr6 4538078 4538386 -177876856 + AluSq SINE Alu 1 309 0 236 274 59 0 chr6 4540428 4540530 -177874712 + L1ME LINE L1 5692 5799 -363 1190 128 12 0 chr6 4540689 4540861 -177874381 + AluSg/x SINE Alu 139 312 0 282 198 244 0 chr6 4541024 4541110 -177874132 + HsTC2 DNA Tc2 28 134 -1764 * 556 167 49 42 chr6 4541109 4541253 -177873989 + HsTC2 DNA Tc2 1650 1794 -104 549 243 126 14 chr6 4541254 4541519 -177873723 + L2 LINE L2 2702 3006 -307 1127 257 119 48 chr6 4541679 4542309 -177872933 + L1MC4 LINE L1 7367 8041 -1 494 296 21 0 chr6 4544370 4544512 -177870730 + MIR SINE MIR 80 224 -38 552 201 79 126 chr6 4544841 4545055 -177870187 + MIR SINE MIR 51 254 -8 2120 58 91 4 chr6 4546358 4546633 -177868609 - AluY SINE Alu -12 299 1 3590 54 16 16 chr6 4547605 4548049 -177867193 + L1PA8 LINE L1 5726 6169 -3 495 317 0 12 chr6 4548147 4548308 -177866934 - MIR SINE MIR -6 256 98 229 325 102 15 chr6 4549225 4549422 -177865820 + L2 LINE L2 318 531 -2783 327 304 53 70 chr6 4549501 4549672 -177865570 - MER5B DNA MER1_type -7 171 4 180 358 56 59 chr6 4549678 4550002 -177865240 + L2 LINE L2 864 1186 -2128 398 233 0 0 chr6 4550149 4550222 -177865020 + Tigger3(Golem) DNA MER2_type 3 75 -2954 651 196 0 0 chr6 4550222 4550329 -177864913 - FLAM_C SINE Alu -35 108 2 492 217 57 23 chr6 4550331 4550506 -177864736 + L1ME1 LINE L1 4279 4459 -1687 * 1401 226 72 24 chr6 4550492 4550638 -177864604 + L1ME1 LINE L1 5643 5781 -385 2355 150 25 34 chr6 4550638 4551045 -177864197 - MER57A LTR ERV1 0 403 1 1401 226 72 24 chr6 4551045 4551313 -177863929 + L1ME1 LINE L1 5781 6077 -89 1557 201 43 23 chr6 4551345 4551743 -177863499 + MER97b DNA MER1_type? 454 859 -194 389 185 46 28 chr6 4551975 4552083 -177863159 + L1 LINE L1 4884 4993 -1153 373 289 50 28 chr6 4552110 4552290 -177862952 + L1MB7 LINE L1 24 207 -6652 230 217 14 14 chr6 4552395 4552464 -177862778 + (TA)n Simple_repeat Simple_repeat 1 69 0 1848 142 32 98 chr6 4552464 4552694 -177862548 + Tigger2 DNA MER2_type 1 245 -2473 2026 120 4 0 chr6 4552694 4552969 -177862273 - AluSx SINE Alu -32 280 5 1848 142 32 98 chr6 4552969 4553205 -177862037 + Tigger2 DNA MER2_type 245 2713 -5 325 345 36 16 chr6 4553226 4553420 -177861822 + L1M4b LINE L1 2663 2860 -4278 802 181 6 19 chr6 4553429 4553589 -177861653 + L1MB7 LINE L1 328 485 -6370 * 14028 153 38 10 chr6 4553582 4555848 -177859394 + L1M1 LINE L1 1361 3752 -3813 1768 152 0 4 chr6 4555848 4556132 -177859110 + AluSx SINE Alu 28 310 0 14028 153 38 10 chr6 4556132 4557243 -177857999 + L1M1 LINE L1 3752 4831 -2734 1311 162 27 96 chr6 4557236 4557481 -177857761 + L1MB7 LINE L1 1210 1428 -5427 * 2349 84 3 0 chr6 4557481 4557777 -177857465 - AluY SINE Alu -14 297 1 1311 162 27 96 chr6 4557777 4557864 -177857378 + L1MB7 LINE L1 1428 1519 -5336 2036 204 42 8 chr6 4559093 4559569 -177855673 + L1MB7 LINE L1 1501 1992 -4863 3455 199 60 12 chr6 4559583 4560366 -177854876 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4560367 4560843 -177854399 + L1MB7 LINE L1 1998 2482 -4477 1246 276 10 17 chr6 4561231 4561713 -177853529 + L1MB7 LINE L1 2581 3059 -3900 5723 127 41 7 chr6 4561713 4562830 -177852412 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4562845 4563123 -177852119 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4563139 4563169 -177852073 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4563320 4563448 -177851794 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4563462 4564984 -177850258 + L1MB7 LINE L1 3045 4535 -2460 203 61 30 0 chr6 4564984 4565017 -177850225 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4565019 4565299 -177849943 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4565299 4565689 -177849553 + L1MB7 LINE L1 4535 4916 -2079 237 65 0 0 chr6 4565689 4565720 -177849522 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4565720 4567449 -177847793 + L1MB7 LINE L1 4916 6858 -137 621 72 0 0 chr6 4567449 4567532 -177847710 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4567532 4567654 -177847588 + L1MB7 LINE L1 6858 6976 -19 6049 205 36 56 chr6 4567704 4568466 -177846776 + L1MA8 LINE L1 3238 4014 -2277 186 43 0 0 chr6 4568466 4568489 -177846753 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4568489 4568788 -177846454 - AluSx SINE Alu -13 299 1 6049 205 36 56 chr6 4568788 4569092 -177846150 + L1MA8 LINE L1 4013 4322 -1969 2453 146 50 8 chr6 4569092 4569470 -177845772 + MSTD LTR MaLR 1 394 -2 6049 205 36 56 chr6 4569470 4571613 -177843629 + L1MA8 LINE L1 4322 6290 -1 2362 212 47 77 chr6 4571617 4572477 -177842765 + L1MD3 LINE L1 4610 5439 -727 312 210 200 10 chr6 4572481 4572581 -177842661 + FLAM_A SINE Alu 6 124 -9 3066 247 117 29 chr6 4572583 4573848 -177841394 + L1MD3 LINE L1 5435 6811 -1184 801 228 107 38 chr6 4573858 4574147 -177841095 + L2 LINE L2 3005 3313 0 696 242 82 6 chr6 4574301 4574483 -177840759 - MER91A DNA MER1_type 0 196 1 4192 152 31 11 chr6 4575713 4576457 -177838785 + L1MB3 LINE L1 5289 6047 -136 625 288 79 46 chr6 4576457 4576888 -177838354 + L1ME4a LINE L1 5526 5970 -151 338 221 58 0 chr6 4576901 4576987 -177838255 + L1ME4a LINE L1 6031 6121 0 1026 140 0 0 chr6 4577315 4577336 -177837906 + (GGAA)n Simple_repeat Simple_repeat 1 200 0 1026 140 0 0 chr6 4577336 4577515 -177837727 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 233 325 79 0 chr6 4578988 4579102 -177836140 + L2 LINE L2 2916 3038 -234 361 307 62 20 chr6 4579192 4579350 -177835892 + MIR SINE MIR 30 191 -66 250 283 97 21 chr6 4579559 4579704 -177835538 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4579724 4579785 -177835457 + CT-rich Low_complexity Low_complexity 6 66 0 242 289 29 29 chr6 4580409 4580513 -177834729 + L2 LINE L2 2935 3038 -234 1905 108 52 3 chr6 4582258 4582544 -177832698 + AluSx SINE Alu 1 300 -12 202 154 0 26 chr6 4583133 4583172 -177832070 - L2 LINE L2 -79 3234 3197 746 142 14 7 chr6 4583422 4583563 -177831679 + L1MA8 LINE L1 6146 6287 -4 1679 130 19 52 chr6 4583571 4583878 -177831364 + AluSx SINE Alu 1 297 -15 1660 76 23 2 chr6 4584458 4584837 -177830405 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4586172 4586337 -177828905 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 453 239 150 60 chr6 4586536 4586703 -177828539 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4587432 4587615 -177827627 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4587808 4587957 -177827285 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4589066 4589134 -177826108 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 364 231 135 52 chr6 4589379 4589574 -177825668 - MIR SINE MIR -29 233 16 731 272 76 71 chr6 4589840 4590248 -177824994 - MLT1J LTR MaLR -78 433 24 2577 120 10 10 chr6 4590722 4591106 -177824136 + MLT1B LTR MaLR 7 390 0 1515 158 93 0 chr6 4592265 4592524 -177822718 + AluJo SINE Alu 1 283 -19 1960 117 7 3 chr6 4592561 4592859 -177822383 + AluSc SINE Alu 1 299 -10 239 333 167 0 chr6 4593314 4593434 -177821808 + MIR3 SINE MIR 51 190 -18 978 238 19 0 chr6 4594308 4594514 -177820728 - MER63A DNA MER1_type 0 210 1 190 267 0 0 chr6 4595450 4595495 -177819747 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4596985 4597017 -177818225 + AT_rich Low_complexity Low_complexity 1 32 0 541 256 168 57 chr6 4597396 4597693 -177817549 - L1MDa LINE L1 -3222 3318 2989 267 274 79 66 chr6 4597730 4597838 -177817404 - L1MDa LINE L1 -3636 2904 2799 2035 129 3 0 chr6 4597838 4598147 -177817095 - AluSx SINE Alu -2 310 1 267 274 79 66 chr6 4598147 4598341 -177816901 - L1MDa LINE L1 -3741 2799 2598 1855 141 30 3 chr6 4598355 4598659 -177816583 + AluJb SINE Alu 1 312 0 336 230 71 26 chr6 4598747 4598860 -177816382 - L1MDa LINE L1 -3982 2558 2441 448 295 76 55 chr6 4599200 4599658 -177815584 - HAL1 LINE L1 -742 1765 1298 286 171 0 0 chr6 4599667 4599708 -177815534 - Tigger5 DNA MER2_type 0 2323 2283 250 233 0 0 chr6 4599716 4599759 -177815483 + Tigger5 DNA MER2_type 2278 2320 -3 * 314 247 0 27 chr6 4599759 4599828 -177815414 - Tigger5 DNA MER2_type -2256 67 1 317 300 66 37 chr6 4599869 4600112 -177815130 - L1MDa LINE L1 -4975 1555 1306 1675 136 0 8 chr6 4600298 4600555 -177814687 + AluSx SINE Alu 43 297 -15 3033 25 3 0 chr6 4600555 4600912 -177814330 - L1PA3 LINE L1 -1005 5141 4784 7922 22 0 0 chr6 4600912 4601984 -177813258 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4602020 4602122 -177813120 + CT-rich Low_complexity Low_complexity 1 106 0 834 295 66 0 chr6 4603064 4603305 -177811937 + MIR SINE MIR 1 257 -5 1683 154 4 7 chr6 4603324 4603603 -177811639 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4603606 4603660 -177811582 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 238 287 169 75 chr6 4603682 4604292 -177810950 + L2 LINE L2 2164 2830 -484 404 335 85 48 chr6 4604337 4604630 -177810612 + L2 LINE L2 2946 3249 -23 451 262 56 76 chr6 4604854 4605030 -177810212 + L1MC/D LINE L1 5196 5374 -1024 1539 185 3 27 chr6 4605030 4605327 -177809915 - AluJb SINE Alu -22 290 1 451 262 56 76 chr6 4605327 4605594 -177809648 + L1MC/D LINE L1 5374 5622 -776 400 255 80 92 chr6 4605905 4606156 -177809086 + MLT1L LTR MaLR 10 257 -358 2744 216 174 55 chr6 4606207 4607153 -177808089 + L1MC4a LINE L1 6442 7500 -308 2056 121 0 0 chr6 4607207 4607515 -177807727 + AluSx SINE Alu 1 308 0 365 280 9 9 chr6 4607547 4607654 -177807588 + L1MC4 LINE L1 7795 7901 -141 291 240 158 23 chr6 4607900 4608071 -177807171 + MLT1K LTR MaLR 395 588 0 2706 19 0 6 chr6 4608174 4608490 -177806752 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4608954 4608990 -177806252 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4608990 4609281 -177805961 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4609281 4609541 -177805701 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4609847 4609995 -177805247 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4610628 4610753 -177804489 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4610753 4610848 -177804394 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4610848 4611551 -177803691 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4611551 4611778 -177803464 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4611780 4612255 -177802987 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4612573 4612705 -177802537 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4613186 4613267 -177801975 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4614549 4615034 -177800208 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4616327 4616473 -177798769 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4616485 4616533 -177798709 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4618708 4618843 -177796399 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4618857 4619073 -177796169 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4620487 4620683 -177794559 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4620681 4620871 -177794371 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4620876 4620960 -177794282 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1191 213 49 4 chr6 4620981 4621225 -177794017 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4621227 4621301 -177793941 + MER5A DNA MER1_type 16 90 -99 851 249 117 42 chr6 4622422 4622824 -177792418 - L1ME3A LINE L1 -130 6032 5601 5641 101 15 16 chr6 4622831 4623494 -177791748 - L1PB1 LINE L1 0 6151 5488 1972 129 3 24 chr6 4623494 4623813 -177791429 - AluSx SINE Alu 0 312 1 5641 101 15 16 chr6 4623813 4624009 -177791233 - L1PB1 LINE L1 -663 5488 5293 1931 67 0 0 chr6 4624022 4624260 -177790982 - LTR17 LTR ERV1 -454 326 89 8320 197 13 38 chr6 4624262 4626090 -177789152 - L1PB1 LINE L1 -852 5294 3516 2378 93 0 0 chr6 4626090 4626390 -177788852 - AluY SINE Alu -11 300 1 8320 197 13 38 chr6 4626390 4626514 -177788728 - L1PB1 LINE L1 -2630 3516 3390 589 255 52 21 chr6 4626626 4626949 -177788293 - L1ME3A LINE L1 -641 5525 5195 2268 111 0 7 chr6 4627649 4627955 -177787287 - AluSx SINE Alu -8 304 1 3067 159 46 9 chr6 4627959 4628543 -177786699 - L1MB3 LINE L1 -1 6182 5577 443 314 7 0 chr6 4628686 4628823 -177786419 - MIR3 SINE MIR -25 183 46 333 0 0 0 chr6 4629221 4629258 -177785984 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 184 26 0 chr6 4629932 4629970 -177785272 + MIR SINE MIR 108 146 -62 301 320 153 0 chr6 4630893 4631043 -177784199 - MER5B DNA MER1_type -5 173 1 191 219 41 73 chr6 4631414 4631537 -177783705 - MIR SINE MIR -50 212 94 431 209 12 0 chr6 4631699 4631785 -177783457 - MER81 DNA DNA -8 106 20 293 188 29 14 chr6 4632211 4632280 -177782962 - Charlie4a DNA MER1_type 0 508 439 436 167 21 0 chr6 4632280 4632376 -177782866 + CT-rich Low_complexity Low_complexity 2 99 0 1894 183 7 0 chr6 4632386 4632692 -177782550 - AluJb SINE Alu -4 308 1 1552 194 140 8 chr6 4632692 4633077 -177782165 - Charlie4a DNA MER1_type -1522 439 1 1574 234 47 20 chr6 4633203 4633645 -177781597 + MLT1C LTR MaLR 1 654 0 187 364 0 0 chr6 4633977 4634065 -177781177 - MIR3 SINE MIR -7 201 114 270 233 78 33 chr6 4634534 4634624 -177780618 - LTR16A1 LTR ERVL -30 427 334 302 274 0 0 chr6 4634730 4634803 -177780439 - MER63 DNA MER1_type -11 1049 977 461 147 0 40 chr6 4634805 4634880 -177780362 - MER63 DNA MER1_type -86 750 679 267 288 0 0 chr6 4635955 4636035 -177779207 + MER116 DNA Mariner 1 80 0 257 330 93 8 chr6 4636174 4636292 -177778950 + MIR3 SINE MIR 12 139 -69 1093 148 44 31 chr6 4637455 4637668 -177777574 + L1MB3 LINE L1 5854 6100 -71 1610 209 3 3 chr6 4637668 4637965 -177777277 + AluJo SINE Alu 1 297 -15 1093 148 44 31 chr6 4637965 4638036 -177777206 + L1MB3 LINE L1 6100 6169 -2 234 333 0 0 chr6 4639644 4639719 -177775523 + L2 LINE L2 3197 3271 -1 306 0 0 0 chr6 4640237 4640271 -177774971 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4640390 4640480 -177774762 + Alu SINE Alu 220 309 0 651 228 133 31 chr6 4641996 4642320 -177772922 + LTR33A LTR ERVL 159 515 -8 516 178 0 0 chr6 4642577 4642667 -177772575 - LTR12 LTR ERV1 0 714 625 304 185 29 27 chr6 4642667 4642769 -177772473 - LTR30 LTR ERV1 -92 614 378 269 145 0 65 chr6 4642769 4642831 -177772411 - LTR12 LTR ERV1 -429 285 228 972 162 96 21 chr6 4642888 4643111 -177772131 - LTR12 LTR ERV1 -480 1683 55 269 231 0 0 chr6 4643111 4643163 -177772079 - LTR30 LTR ERV1 -670 52 1 2352 106 0 0 chr6 4643730 4644031 -177771211 - AluSq SINE Alu -12 301 1 349 141 31 0 chr6 4644331 4644395 -177770847 + Alu SINE Alu 235 300 -2 2498 154 55 20 chr6 4644522 4644962 -177770280 - MLT1C LTR MaLR 0 467 13 1679 208 28 48 chr6 4644980 4645374 -177769868 - MLT1C-int LTR MaLR -14 1357 972 2352 108 95 63 chr6 4645899 4646362 -177768880 + L1MA7 LINE L1 5813 6290 -1 1593 159 116 0 chr6 4646372 4646630 -177768612 + AluJb SINE Alu 1 288 -24 282 327 68 19 chr6 4646849 4647011 -177768231 + MER5A DNA MER1_type 20 189 0 426 319 44 22 chr6 4647016 4647198 -177768044 + MIR SINE MIR 18 203 -59 263 278 41 10 chr6 4647325 4647422 -177767820 + MIR SINE MIR 153 252 -10 2256 97 10 3 chr6 4647804 4648102 -177767140 + AluSc SINE Alu 1 300 -9 1949 184 91 30 chr6 4648652 4649114 -177766128 - LTR2B LTR ERV1 0 490 1 232 407 42 0 chr6 4649166 4649284 -177765958 - L2 LINE L2 -27 3245 3123 295 231 51 0 chr6 4649335 4649413 -177765829 + MER58B DNA MER1_type 252 333 -8 742 157 100 7 chr6 4649648 4649788 -177765454 - LTR32 LTR ERVL 0 471 319 1956 181 29 14 chr6 4649790 4650139 -177765103 - LTR32 LTR ERVL -103 368 15 1583 190 74 3 chr6 4650139 4650503 -177764739 + L1MB2 LINE L1 5782 6171 0 764 330 14 17 chr6 4650832 4651178 -177764064 + L2 LINE L2 1973 2317 -997 921 281 118 53 chr6 4651195 4651644 -177763598 - MLT1J LTR MaLR -33 478 1 352 328 82 30 chr6 4651644 4651973 -177763269 + L2 LINE L2 2315 2660 -654 452 287 42 7 chr6 4652032 4652175 -177763067 + L2 LINE L2 2553 2700 -614 2041 142 3 0 chr6 4652225 4652528 -177762714 + AluSx SINE Alu 1 304 -8 200 253 33 80 chr6 4652672 4652822 -177762420 + L2 LINE L2 2949 3091 -181 193 250 52 73 chr6 4652969 4653065 -177762177 + L2 LINE L2 3220 3313 0 708 138 7 51 chr6 4654549 4654687 -177760555 - FRAM SINE Alu -4 172 41 560 285 108 25 chr6 4654997 4655274 -177759968 + L1MC4a LINE L1 5569 5868 -1940 868 123 23 0 chr6 4655293 4655423 -177759819 - FLAM_C SINE Alu 0 133 1 1250 202 96 58 chr6 4655502 4656191 -177759051 - L1ME1 LINE L1 -9 6157 5496 2276 123 0 0 chr6 4656191 4656500 -177758742 - AluSg SINE Alu -1 309 1 2161 121 0 25 chr6 4656500 4656815 -177758427 - AluSx SINE Alu -4 308 2 1250 202 96 58 chr6 4656815 4656894 -177758348 - L1ME1 LINE L1 -670 5496 5421 1852 169 0 7 chr6 4656894 4657195 -177758047 - AluSx SINE Alu -13 299 1 1250 202 96 58 chr6 4657195 4657523 -177757719 - L1ME1 LINE L1 -745 5421 4853 832 164 42 61 chr6 4657916 4658031 -177757211 - AluJo SINE Alu -17 295 182 4999 71 3 2 chr6 4658031 4658663 -177756579 - LTR10E LTR ERV1 0 633 1 832 164 42 61 chr6 4658663 4658712 -177756530 - AluJo SINE Alu -130 182 134 846 150 0 0 chr6 4658712 4658845 -177756397 - AluJo SINE Alu -169 133 1 761 246 42 17 chr6 4659640 4659876 -177755366 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4659978 4660295 -177754947 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4660532 4660694 -177754548 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4660785 4661102 -177754140 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4661102 4661392 -177753850 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4661392 4661529 -177753713 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4661575 4661699 -177753543 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4661883 4662148 -177753094 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4662155 4662176 -177753066 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4662247 4662531 -177752711 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4662543 4662854 -177752388 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4662874 4663314 -177751928 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4663314 4663462 -177751780 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4663563 4663715 -177751527 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4663599 4663875 -177751367 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4663875 4664086 -177751156 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4664086 4664468 -177750774 + MER63C DNA MER1_type 518 924 -6 271 285 98 16 chr6 4665317 4665440 -177749802 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4665459 4665883 -177749359 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4665975 4666205 -177749037 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4666222 4666247 -177748995 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4666267 4666364 -177748878 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4666364 4666747 -177748495 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4666747 4667231 -177748011 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4667470 4667769 -177747473 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4668836 4668998 -177746244 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4669054 4669455 -177745787 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4669510 4671860 -177743382 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4671915 4672005 -177743237 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4672595 4672811 -177742431 + AluSg/x SINE Alu 89 304 -8 205 285 49 57 chr6 4674085 4674208 -177741034 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4674563 4674596 -177740646 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4674615 4674911 -177740331 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4675149 4675437 -177739805 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4676558 4676722 -177738520 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4677000 4677175 -177738067 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4677788 4678194 -177737048 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4678189 4680817 -177734425 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4680826 4681132 -177734110 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4681136 4681337 -177733905 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4681337 4681555 -177733687 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4681555 4681572 -177733670 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4681576 4681672 -177733570 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4681672 4681732 -177733510 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4681732 4682016 -177733226 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4682053 4682352 -177732890 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4682550 4683482 -177731760 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4684668 4684740 -177730502 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4684790 4685012 -177730230 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4685012 4685301 -177729941 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4685301 4686458 -177728784 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4686480 4687209 -177728033 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4687228 4687293 -177727949 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4687505 4687994 -177727248 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4688000 4688120 -177727122 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4688209 4688332 -177726910 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4689954 4690202 -177725040 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4690262 4690493 -177724749 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4690504 4690541 -177724701 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4692021 4692174 -177723068 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4692349 4692680 -177722562 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4694159 4694583 -177720659 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4695146 4695501 -177719741 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4695570 4695933 -177719309 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4697362 4697474 -177717768 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4697524 4697639 -177717603 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4697639 4697945 -177717297 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4697945 4698075 -177717167 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4698149 4698271 -177716971 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4698586 4698627 -177716615 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4699218 4699307 -177715935 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4699365 4699664 -177715578 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4699852 4700018 -177715224 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4701372 4701458 -177713784 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4701928 4702204 -177713038 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4703004 4703117 -177712125 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4704083 4704122 -177711120 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4704181 4704367 -177710875 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4704598 4704795 -177710447 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4704820 4704891 -177710351 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4704891 4705189 -177710053 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4705189 4705664 -177709578 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4706281 4706513 -177708729 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4706709 4707089 -177708153 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4707503 4707715 -177707527 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4708384 4708670 -177706572 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4708893 4709099 -177706143 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4709100 4709399 -177705843 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4710433 4710551 -177704691 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4710549 4710912 -177704330 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4710943 4711334 -177703908 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4711430 4712072 -177703170 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4712072 4712192 -177703050 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4712197 4712533 -177702709 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4713150 4713274 -177701968 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4713671 4713726 -177701516 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4713726 4713830 -177701412 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4713837 4713866 -177701376 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4713866 4714160 -177701082 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4714160 4714695 -177700547 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4714695 4714994 -177700248 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4714996 4715320 -177699922 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4715320 4715487 -177699755 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4715487 4715595 -177699647 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4715613 4715657 -177699585 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4715682 4716980 -177698262 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4717057 4717176 -177698066 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4717178 4717443 -177697799 + AluSx SINE Alu 35 305 -7 291 127 0 2 chr6 4717661 4717702 -177697540 - MSTA LTR MaLR 0 428 386 2331 102 3 0 chr6 4717702 4718005 -177697237 + AluSx SINE Alu 1 304 -8 27 29 0 0 chr6 4718421 4718455 -177696787 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4719389 4719456 -177695786 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4719768 4719789 -177695453 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4722143 4722177 -177693065 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4723258 4723289 -177691953 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4723292 4723330 -177691912 + (TA)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr6 4724365 4724387 -177690855 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4724407 4724717 -177690525 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4724718 4725059 -177690183 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4725151 4725321 -177689921 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4725511 4725868 -177689374 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4726069 4726213 -177689029 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4726299 4726770 -177688472 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4726770 4727068 -177688174 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4727068 4727519 -177687723 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4727607 4727701 -177687541 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4727948 4728096 -177687146 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4728193 4728369 -177686873 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4728408 4728574 -177686668 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4728574 4728878 -177686364 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4728878 4729012 -177686230 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4729506 4729654 -177685588 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4729728 4729972 -177685270 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4729976 4730302 -177684940 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4730305 4730615 -177684627 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4730619 4730823 -177684419 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4730821 4731116 -177684126 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4731116 4731413 -177683829 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4731413 4731787 -177683455 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4731787 4732157 -177683085 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4732157 4732492 -177682750 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4732492 4732802 -177682440 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4732802 4733035 -177682207 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4733059 4733651 -177681591 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4734154 4734254 -177680988 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4734268 4734352 -177680890 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4734352 4734919 -177680323 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4734919 4735194 -177680048 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4735213 4735289 -177679953 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4735593 4736001 -177679241 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4736005 4736053 -177679189 + MER66A LTR ERV1 290 337 -141 282 281 20 69 chr6 4736100 4736303 -177678939 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4738529 4738567 -177676675 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4738569 4738839 -177676403 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4739092 4739419 -177675823 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4739419 4739723 -177675519 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4739723 4739760 -177675482 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4739924 4740151 -177675091 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4741042 4741336 -177673906 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4741701 4741809 -177673433 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4741809 4742103 -177673139 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4742245 4742358 -177672884 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4742326 4742677 -177672565 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4742677 4742710 -177672532 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4742724 4742991 -177672251 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4743268 4743568 -177671674 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4743733 4744027 -177671215 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4744264 4744395 -177670847 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4744470 4744774 -177670468 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4744829 4744935 -177670307 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4744948 4745038 -177670204 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4745372 4745449 -177669793 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4745449 4745479 -177669763 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4745479 4745584 -177669658 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4746314 4746624 -177668618 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4747440 4747633 -177667609 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4748118 4748419 -177666823 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4748594 4748746 -177666496 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4748842 4749034 -177666208 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4750498 4750793 -177664449 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4751125 4751145 -177664097 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4751694 4751766 -177663476 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4751959 4752265 -177662977 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4752371 4752657 -177662585 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4752811 4753109 -177662133 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4753294 4753444 -177661798 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4753444 4753744 -177661498 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4753744 4753915 -177661327 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4755826 4755882 -177659360 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4755913 4756212 -177659030 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4756386 4756684 -177658558 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4756715 4756942 -177658300 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4757052 4757127 -177658115 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4757127 4757424 -177657818 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4757424 4757478 -177657764 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4757576 4757893 -177657349 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4757910 4758103 -177657139 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4758130 4758288 -177656954 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4758587 4758882 -177656360 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4759003 4760403 -177654839 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4760662 4760787 -177654455 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4760787 4761083 -177654159 + AluSg SINE Alu 1 300 -10 1442 153 69 42 chr6 4761083 4761245 -177653997 + AluJo SINE Alu 121 296 -16 196 232 61 12 chr6 4761397 4761479 -177653763 + MIR SINE MIR 112 197 -65 2014 151 0 0 chr6 4764167 4764458 -177650784 + AluJb SINE Alu 1 291 -21 2459 84 10 0 chr6 4764926 4765235 -177650007 + AluSq SINE Alu 1 312 -1 400 325 18 12 chr6 4765627 4765796 -177649446 - L3 LINE CR1 -520 1057 888 2138 102 0 75 chr6 4766046 4766368 -177648874 + AluSx SINE Alu 1 298 -14 1831 182 0 0 chr6 4766584 4766870 -177648372 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4766870 4766893 -177648349 + AT_rich Low_complexity Low_complexity 1 23 0 1573 173 3 40 chr6 4766905 4767205 -177648037 + AluJo SINE Alu 3 291 -21 2145 114 43 3 chr6 4768372 4768671 -177646571 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4769180 4769254 -177645988 + G-rich Low_complexity Low_complexity 2 74 0 694 160 75 64 chr6 4769469 4769536 -177645706 - Charlie4a DNA MER1_type -1465 496 431 2407 82 3 13 chr6 4769536 4769841 -177645401 + AluSp SINE Alu 1 302 -11 694 160 75 64 chr6 4769841 4769960 -177645282 - Charlie4a DNA MER1_type -1530 431 308 1606 199 62 71 chr6 4769963 4770013 -177645229 - L1MA10 LINE L1 -7 6327 6278 2104 125 0 7 chr6 4770013 4770309 -177644933 + AluSq SINE Alu 1 294 -19 1606 199 62 71 chr6 4770309 4770725 -177644517 - L1MA10 LINE L1 -56 6278 5865 1108 189 84 0 chr6 4770725 4770963 -177644279 - Charlie4a DNA MER1_type -192 316 59 1923 83 117 0 chr6 4771902 4772168 -177643074 + AluSx SINE Alu 1 297 -15 1481 94 0 0 chr6 4772170 4772351 -177642891 - AluSc SINE Alu -123 186 6 395 300 93 17 chr6 4772355 4772592 -177642650 + L1MC4a LINE L1 5080 5334 -812 1765 144 0 11 chr6 4772653 4772916 -177642326 + AluSx SINE Alu 29 288 -24 784 311 82 26 chr6 4772939 4773411 -177641831 + L1MC4a LINE L1 5374 5872 -298 2380 84 3 0 chr6 4773411 4773711 -177641531 + AluSp SINE Alu 1 347 0 309 43 22 0 chr6 4773711 4773757 -177641485 + (TAAAA)n Simple_repeat Simple_repeat 4 170 0 2244 110 0 28 chr6 4773767 4774085 -177641157 + AluSq SINE Alu 1 309 -4 2331 89 7 3 chr6 4774203 4774506 -177640736 + AluSp SINE Alu 1 304 -9 1081 162 19 14 chr6 4774832 4775048 -177640194 + MER20 DNA MER1_type 1 217 -2 2330 108 0 0 chr6 4775321 4775618 -177639624 - AluSx SINE Alu -15 297 1 1289 274 84 32 chr6 4775867 4776341 -177638901 - MLT1J LTR MaLR -2 509 11 1717 153 38 51 chr6 4776610 4776924 -177638318 + AluJb SINE Alu 1 310 -2 1849 154 3 10 chr6 4778746 4779038 -177636204 + AluJo SINE Alu 4 293 -19 818 206 113 21 chr6 4779120 4779358 -177635884 - MIR SINE MIR -2 260 1 1809 141 17 23 chr6 4779492 4779791 -177635451 - AluJo SINE Alu -15 297 1 1039 79 14 36 chr6 4779986 4780125 -177635117 + AluSq/x SINE Alu 1 136 -176 231 284 77 26 chr6 4780294 4780449 -177634793 - L2 LINE L2 -213 3059 2897 2238 101 10 0 chr6 4780615 4780911 -177634331 + AluSg SINE Alu 1 299 -11 2251 114 0 0 chr6 4781558 4781855 -177633387 + AluSg SINE Alu 1 297 -13 340 296 40 66 chr6 4782416 4782568 -177632674 + L2 LINE L2 3125 3272 0 408 200 144 0 chr6 4782785 4782875 -177632367 + FLAM_C SINE Alu 1 103 -30 228 35 0 0 chr6 4783188 4783217 -177632025 + (CA)n Simple_repeat Simple_repeat 2 30 0 204 197 106 15 chr6 4783451 4783517 -177631725 - MIR3 SINE MIR -10 198 127 1019 69 30 13 chr6 4783813 4784050 -177631192 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 361 232 84 0 chr6 4784338 4784433 -177630809 + MER94 DNA DNA 1 103 -31 776 177 0 0 chr6 4784589 4784713 -177630529 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4784716 4784742 -177630500 + AT_rich Low_complexity Low_complexity 1 26 0 818 158 0 0 chr6 4785009 4785136 -177630106 - AluJb SINE Alu -185 127 1 278 355 21 35 chr6 4785264 4785405 -177629837 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4786275 4786317 -177628925 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4786995 4787030 -177628212 + AT_rich Low_complexity Low_complexity 1 35 0 260 301 60 15 chr6 4787052 4787185 -177628057 + MIR SINE MIR 54 192 -70 2237 118 0 0 chr6 4787520 4787824 -177627418 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4787824 4787861 -177627381 - MSTA LTR MaLR -391 37 1 282 366 31 9 chr6 4788025 4788252 -177626990 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4789143 4789437 -177625805 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4789802 4789910 -177625332 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4789910 4790204 -177625038 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4790346 4790459 -177624783 - L1M3 LINE L1 -662 5509 5402 300 275 91 30 chr6 4790427 4790725 -177624517 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4790877 4790909 -177624333 + AT_rich Low_complexity Low_complexity 1 33 -13 2250 95 3 0 chr6 4790909 4791194 -177624048 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4791194 4791208 -177624034 + AT_rich Low_complexity Low_complexity 33 46 0 686 195 0 0 chr6 4791208 4791326 -177623916 + FRAM SINE Alu 1 113 -63 2682 51 0 10 chr6 4791533 4791847 -177623395 - AluY SINE Alu 0 311 1 571 245 155 0 chr6 4791946 4792101 -177623141 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4793529 4793550 -177621692 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4793552 4793616 -177621626 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1661 178 25 0 chr6 4793617 4793903 -177621339 - AluJb SINE Alu -19 293 1 915 119 0 30 chr6 4794709 4794843 -177620399 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4795717 4795737 -177619505 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2241 100 0 34 chr6 4795742 4796063 -177619179 - AluSq SINE Alu -3 310 1 260 301 60 15 chr6 4796398 4796531 -177618711 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4796553 4796588 -177618654 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4797266 4797308 -177617934 + (TG)n Simple_repeat Simple_repeat 2 43 0 278 355 21 35 chr6 4798178 4798319 -177616923 - MIR3 SINE MIR -38 170 32 818 158 0 0 chr6 4798447 4798574 -177616668 + AluJb SINE Alu 1 127 -185 2044 136 3 3 chr6 4798750 4799036 -177616206 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4799036 4799064 -177616178 + (TA)n Simple_repeat Simple_repeat 2 29 0 2012 121 7 10 chr6 4799072 4799362 -177615880 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4799534 4799583 -177615659 + AT_rich Low_complexity Low_complexity 1 49 0 2536 64 0 6 chr6 4799650 4799961 -177615281 - AluY SINE Alu -2 309 1 270 292 36 18 chr6 4800045 4800213 -177615029 - L1ME4a LINE L1 -226 5895 5725 2444 82 10 0 chr6 4800296 4800668 -177614574 + AluSq SINE Alu 5 379 0 2260 103 0 0 chr6 4802042 4802334 -177612908 - AluSg SINE Alu -18 292 1 226 254 111 0 chr6 4802461 4802524 -177612718 + MIR SINE MIR 123 192 -70 2111 283 124 41 chr6 4802943 4804353 -177610889 + L1MEd LINE L1 543 1835 -4294 2130 136 0 13 chr6 4804353 4804655 -177610587 + AluSx SINE Alu 1 298 -14 2111 283 124 41 chr6 4804655 4804971 -177610271 + L1MEd LINE L1 1835 2123 -4006 2286 123 0 0 chr6 4804971 4805280 -177609962 - AluSg SINE Alu -1 309 1 2111 283 124 41 chr6 4805280 4805733 -177609509 + L1MEd LINE L1 2123 2537 -3592 2071 131 7 7 chr6 4805733 4806038 -177609204 + AluSx SINE Alu 1 305 -7 2111 283 124 41 chr6 4806038 4806247 -177608995 + L1MEd LINE L1 2537 2727 -3402 2200 131 0 0 chr6 4806247 4806553 -177608689 - AluSx SINE Alu -3 309 4 2111 283 124 41 chr6 4806553 4806892 -177608350 + L1MEd LINE L1 2727 3036 -3093 2336 106 0 3 chr6 4806892 4807203 -177608039 - AluSq SINE Alu -3 310 1 2111 283 124 41 chr6 4807203 4807415 -177607827 + L1MEd LINE L1 3036 3229 -2900 1720 164 20 16 chr6 4807415 4807720 -177607522 + AluJb SINE Alu 1 306 -6 2111 283 124 41 chr6 4807720 4807957 -177607285 + L1MEd LINE L1 3229 3938 -2191 2068 122 0 0 chr6 4807985 4808263 -177606979 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4808265 4808315 -177606927 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 365 258 157 13 chr6 4808315 4808474 -177606768 + L1MEd LINE L1 3947 4128 -2001 4198 140 108 100 chr6 4808942 4809347 -177605895 + L1MC3 LINE L1 6688 7088 -697 231 276 46 0 chr6 4809347 4809434 -177605808 + MLT1F1 LTR MaLR 35 125 -442 4198 140 108 100 chr6 4809434 4810011 -177605231 + L1MC3 LINE L1 7088 7765 -20 2333 70 17 7 chr6 4810484 4810658 -177604584 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4810658 4810703 -177604539 + (TG)n Simple_repeat Simple_repeat 2 46 0 2333 70 17 7 chr6 4810703 4810829 -177604413 - AluY SINE Alu -187 124 1 305 313 157 0 chr6 4810855 4810970 -177604272 + L2 LINE L2 3134 3266 -6 304 197 0 0 chr6 4811153 4811214 -177604028 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4811225 4811246 -177603996 + AT_rich Low_complexity Low_complexity 1 21 0 309 163 75 25 chr6 4811567 4811647 -177603595 + MER112 DNA MER1_type 1 84 -176 372 175 0 97 chr6 4811766 4811807 -177603435 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4811807 4812106 -177603136 - AluSx SINE Alu -20 292 1 372 175 0 97 chr6 4812106 4812178 -177603064 - MER5A DNA MER1_type -124 65 6 189 74 0 0 chr6 4812398 4812425 -177602817 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4816310 4816437 -177598805 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4816836 4816945 -177598297 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4816972 4817002 -177598240 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4817150 4817199 -177598043 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4817291 4817313 -177597929 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4817412 4817440 -177597802 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4817526 4817623 -177597619 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4818685 4818805 -177596437 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4819526 4819748 -177595494 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4820151 4820209 -177595033 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4820447 4820758 -177594484 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4820913 4821261 -177593981 - AluYa5 SINE Alu 0 311 1 510 281 81 64 chr6 4823860 4824110 -177591132 - L1MEd LINE L1 -4641 1669 1425 2110 133 0 7 chr6 4824110 4824411 -177590831 - AluSq SINE Alu -14 299 1 510 281 81 64 chr6 4824411 4824877 -177590365 - L1MEd LINE L1 -4885 1425 908 1936 144 73 12 chr6 4825315 4825417 -177589825 + MER7A DNA MER2_type 2 96 -2942 2648 112 20 0 chr6 4825417 4825774 -177589468 + THE1B LTR MaLR 1 364 0 1936 144 73 12 chr6 4825774 4825998 -177589244 + MER7A DNA MER2_type 96 346 0 2242 114 3 0 chr6 4828458 4828764 -177586478 - AluSx SINE Alu -5 307 1 1924 129 34 3 chr6 4828900 4829195 -177586047 + AluSx SINE Alu 1 304 -8 1759 170 7 0 chr6 4829766 4830066 -177585176 - AluJb SINE Alu -10 302 1 380 293 61 45 chr6 4832056 4832254 -177582988 + MARNA DNA Mariner 275 475 -111 2485 55 0 32 chr6 4832576 4832884 -177582358 - AluY SINE Alu -13 298 1 516 263 131 58 chr6 4832937 4833126 -177582116 - L1ME LINE L1 -840 5240 5066 2177 109 3 17 chr6 4833126 4833428 -177581814 - AluSx SINE Alu -14 298 1 516 263 131 58 chr6 4833428 4833931 -177581311 - L1ME LINE L1 -1014 5066 4497 229 262 0 83 chr6 4833931 4834015 -177581227 - L2 LINE L2 -59 3254 3178 2485 240 141 49 chr6 4834132 4835351 -177579891 - L2 LINE L2 -421 2893 1563 603 279 148 41 chr6 4835516 4836057 -177579185 - L1ME LINE L1 -1801 4279 3681 329 252 271 0 chr6 4836382 4836600 -177578642 - L1M4 LINE L1 -2906 3240 2964 1772 104 100 19 chr6 4836655 4836925 -177578317 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4837058 4837080 -177578162 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4838100 4838127 -177577115 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2390 194 55 30 chr6 4838127 4838652 -177576590 - L1MB7 LINE L1 -16 6168 5631 1852 197 0 0 chr6 4838656 4838965 -177576277 - AluJb SINE Alu -3 309 1 2402 264 135 36 chr6 4839295 4840136 -177575106 - L1ME LINE L1 -2406 3674 2918 1593 176 51 14 chr6 4840136 4840431 -177574811 - AluJb SINE Alu -6 306 1 2402 264 135 36 chr6 4840431 4842470 -177572772 - L1ME LINE L1 -3162 2918 278 225 283 19 66 chr6 4842575 4842681 -177572561 - L1ME LINE L1 -5610 460 360 1782 171 3 7 chr6 4842953 4843245 -177571997 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4844426 4844446 -177570796 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4844608 4844645 -177570597 + AT_rich Low_complexity Low_complexity 1 37 0 2565 162 24 31 chr6 4846133 4846644 -177568598 - MLT2B1 LTR ERVL -8 512 6 4252 221 91 51 chr6 4847127 4847530 -177567712 - L1MC4a LINE L1 0 7808 7422 1520 218 17 57 chr6 4847530 4847933 -177567309 - MLT1B LTR MaLR 0 390 4 4252 221 91 51 chr6 4847933 4848284 -177566958 - L1MC4a LINE L1 -386 7422 7086 2056 137 0 9 chr6 4848284 4848599 -177566643 - AluJo SINE Alu 0 312 1 4252 221 91 51 chr6 4848599 4849230 -177566012 - L1MC4a LINE L1 -722 7086 6367 566 245 0 2 chr6 4849231 4849416 -177565826 + MER58A DNA MER1_type 6 223 -1 2588 218 53 30 chr6 4849424 4850159 -177565083 - L1MC4a LINE L1 -1434 6374 5623 1583 176 76 53 chr6 4851286 4851643 -177563599 - MLT1A1 LTR MaLR 0 365 1 242 163 23 0 chr6 4851741 4851784 -177563458 + MER69 DNA AcHobo 1 44 -133 896 160 37 102 chr6 4852298 4852542 -177562700 - AluJo SINE Alu -8 304 77 356 214 51 41 chr6 4852668 4852766 -177562476 + MER5A DNA MER1_type 14 112 -77 344 260 127 48 chr6 4852885 4853205 -177562037 - L1MC4a LINE L1 -494 5627 5538 * 559 265 88 89 chr6 4853202 4854154 -177561088 - L1MC4a LINE L1 -1331 4815 3865 1665 177 16 35 chr6 4854454 4854771 -177560471 - AluJb SINE Alu -1 311 1 1870 152 10 7 chr6 4855212 4855515 -177559727 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4855899 4855939 -177559303 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 333 310 147 11 chr6 4856166 4856350 -177558892 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4856366 4856399 -177558843 + (T)n Simple_repeat Simple_repeat 1 33 0 300 330 52 26 chr6 4856555 4856785 -177558457 - L1MC4a LINE L1 -1008 5138 4903 1854 155 36 7 chr6 4857178 4857481 -177557761 - AluSx SINE Alu 0 312 1 1820 160 7 0 chr6 4858667 4858981 -177556261 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4859809 4859856 -177555386 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4859855 4859876 -177555366 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 1018 169 13 65 chr6 4860381 4860612 -177554630 + MER20 DNA MER1_type 1 219 0 1049 56 0 42 chr6 4861953 4862095 -177553147 - AluSg/x SINE Alu -1 311 176 2037 130 3 10 chr6 4862144 4862444 -177552798 + AluSx SINE Alu 1 298 -14 1644 154 6 91 chr6 4862660 4862990 -177552252 - AluJb SINE Alu -9 303 2 233 262 92 35 chr6 4864152 4864293 -177550949 - L1MB1 LINE L1 0 6168 6020 * 436 211 158 0 chr6 4864291 4864424 -177550818 - L1MB4 LINE L1 -12 6168 6015 * 3870 182 64 33 chr6 4864418 4865467 -177549775 - L1MB4 LINE L1 -11 6667 5590 423 170 41 109 chr6 4865462 4865567 -177549675 - L1MC4a LINE L1 -1433 4713 4619 * 2223 116 0 0 chr6 4865567 4865859 -177549383 - AluSx SINE Alu -16 296 5 423 170 41 109 chr6 4865859 4865900 -177549342 - L1MC4a LINE L1 -1527 4619 4577 1361 206 224 32 chr6 4865919 4866420 -177548822 - L1MB4 LINE L1 -1800 4844 4248 747 248 57 52 chr6 4866424 4866634 -177548608 - MER82 DNA MER2_type 0 653 443 381 303 6 46 chr6 4866680 4866813 -177548429 + MIR SINE MIR 31 164 -44 3851 213 118 72 chr6 4866909 4868351 -177546891 - L1MB4 LINE L1 -2849 3795 2420 2205 118 3 0 chr6 4868351 4868647 -177546595 - AluSx SINE Alu -15 297 1 3851 213 118 72 chr6 4868647 4868945 -177546297 - L1MB4 LINE L1 -4224 2420 2137 1198 100 6 18 chr6 4868945 4869115 -177546127 - FRAM SINE Alu -9 167 1 3851 213 118 72 chr6 4869115 4870093 -177545149 - L1MB4 LINE L1 -4507 2137 777 183 80 0 0 chr6 4870093 4870118 -177545124 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3851 213 118 72 chr6 4870118 4870293 -177544949 - L1MB4 LINE L1 -5867 777 611 338 280 77 33 chr6 4870593 4870775 -177544467 - L1MB4 LINE L1 -6335 207 18 230 314 0 14 chr6 4870977 4871047 -177544195 + MER113 DNA MER1_type? 452 520 -1 5190 21 0 9 chr6 4871291 4871865 -177543377 - L1PA3 LINE L1 -1 6154 5586 32443 35 2 1 chr6 4871865 4876923 -177538319 - L1PA3 LINE L1 -1087 5059 2 352 266 79 50 chr6 4877641 4877780 -177537462 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4878047 4878076 -177537166 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4878141 4878457 -177536785 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4878462 4878770 -177536472 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4878852 4879386 -177535856 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4879386 4879667 -177535575 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4879667 4881532 -177533710 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4881532 4881573 -177533669 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4881573 4882649 -177532593 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4882649 4882700 -177532542 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4882700 4882872 -177532370 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4882875 4882950 -177532292 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4882957 4884909 -177530333 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4884952 4885077 -177530165 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4885077 4885272 -177529970 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4885372 4885942 -177529300 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4885984 4886004 -177529238 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4886243 4886573 -177528669 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4887507 4887563 -177527679 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4887812 4887921 -177527321 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4888835 4888964 -177526278 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4890428 4890633 -177524609 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4890648 4890777 -177524465 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4890899 4890967 -177524275 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4891854 4892008 -177523234 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4892729 4892961 -177522281 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4893008 4893316 -177521926 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4893434 4893488 -177521754 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4893488 4893781 -177521461 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4893781 4893875 -177521367 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4893905 4894148 -177521094 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4894163 4894208 -177521034 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4895979 4896155 -177519087 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4896482 4896527 -177518715 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4896781 4897166 -177518076 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4897212 4897528 -177517714 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4897828 4897953 -177517289 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4899074 4899295 -177515947 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4899405 4899635 -177515607 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4900582 4900893 -177514349 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4901154 4901204 -177514038 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4901206 4901307 -177513935 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4901338 4901733 -177513509 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4903488 4904047 -177511195 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4904608 4905009 -177510233 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4905199 4905555 -177509687 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4905643 4906235 -177509007 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4906548 4906860 -177508382 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4906965 4907188 -177508054 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4907188 4907391 -177507851 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4907391 4907626 -177507616 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4907904 4908456 -177506786 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4908499 4909781 -177505461 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4909781 4910088 -177505154 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4910088 4910733 -177504509 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4910764 4910913 -177504329 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4910941 4911737 -177503505 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4912064 4912130 -177503112 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4913074 4913372 -177501870 - AluSq SINE Alu -12 301 1 1742 255 98 5 chr6 4915269 4915915 -177499327 - L1ME2 LINE L1 -4 6160 5455 733 251 100 36 chr6 4915887 4916386 -177498856 - L1ME2 LINE L1 -1381 4765 4235 * 1324 204 78 78 chr6 4916655 4917410 -177497832 - L1ME2 LINE L1 -15 6218 5359 361 131 0 0 chr6 4917438 4917499 -177497743 + MLT1A1-int LTR MaLR 1662 1722 -13 1603 204 64 0 chr6 4917532 4917875 -177497367 + MLT1A1 LTR MaLR 1 365 0 1035 272 61 43 chr6 4917999 4918702 -177496540 - L1ME2 LINE L1 -968 5247 4532 * 1964 238 136 56 chr6 4918696 4920150 -177495092 - L1ME2 LINE L1 -2228 3987 2418 2439 91 0 3 chr6 4920245 4920552 -177494690 - AluSq SINE Alu -7 306 1 4914 159 62 19 chr6 4920558 4921666 -177493576 - L1MC1 LINE L1 -2 6331 5186 474 265 48 59 chr6 4921673 4922031 -177493211 - L1ME2 LINE L1 -3826 2389 2076 406 312 51 22 chr6 4922092 4922230 -177493012 + MER5A DNA MER1_type 33 174 -15 385 221 129 42 chr6 4922236 4922476 -177492766 - L1ME2 LINE L1 -4387 2009 1749 940 264 123 21 chr6 4922532 4922914 -177492328 + LTR40b LTR ERVL 1 421 -41 766 270 102 24 chr6 4922931 4923368 -177491874 + HERVL40 LTR ERVL 43 568 -4962 661 270 0 54 chr6 4923447 4923688 -177491554 + HERVL40 LTR ERVL 606 833 -4697 281 197 0 0 chr6 4924916 4924977 -177490265 + HERVL68 LTR ERVL 2830 2890 -147 * 870 251 42 0 chr6 4924966 4925205 -177490037 + HERVL68 LTR ERVL 5278 5526 -4 789 267 105 24 chr6 4925209 4925580 -177489662 + LTR40a LTR ERVL 1 401 -118 1285 222 4 33 chr6 4925582 4925690 -177489552 + Tigger7 DNA MER2_type 1 111 -622 1960 166 0 0 chr6 4925690 4925986 -177489256 - AluJo SINE Alu -16 296 1 1285 222 4 33 chr6 4925986 4926152 -177489090 + Tigger7 DNA MER2_type 111 267 -466 434 216 0 0 chr6 4926153 4926241 -177489001 + Tigger7 DNA MER2_type 2396 2483 -4 500 139 37 56 chr6 4926252 4926360 -177488882 + LTR40a LTR ERVL 410 515 -4 7995 211 81 25 chr6 4926428 4929762 -177485480 - L1MB8 LINE L1 0 6178 2658 793 213 54 76 chr6 4929897 4929915 -177485327 + MER58B DNA MER1_type 71 88 -2332 2432 73 3 3 chr6 4929915 4930215 -177485027 - AluSg SINE Alu -10 300 1 793 213 54 76 chr6 4930215 4930473 -177484769 + MER58B DNA MER1_type 88 341 0 2329 97 0 0 chr6 4934103 4934403 -177480839 + AluSx SINE Alu 1 300 -12 193 272 123 0 chr6 4934796 4934877 -177480365 - MIR3 SINE MIR -8 200 110 666 256 36 15 chr6 4935049 4935244 -177479998 + MER58 DNA MER1_type 2 200 -141 1175 105 7 0 chr6 4935289 4935441 -177479801 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4935527 4935557 -177479685 + (TG)n Simple_repeat Simple_repeat 2 31 0 233 326 0 0 chr6 4935576 4935665 -177479577 + L1MC4 LINE L1 6615 6703 -1339 234 113 0 75 chr6 4935700 4935753 -177479489 + L1MC4 LINE L1 6653 6701 -1341 * 237 299 23 0 chr6 4935734 4935821 -177479421 + L1MC4 LINE L1 6615 6703 -1339 232 299 23 0 chr6 4935757 4935844 -177479398 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4935847 4935893 -177479349 + (TA)n Simple_repeat Simple_repeat 2 47 0 237 299 86 8 chr6 4936469 4936586 -177478656 + L2 LINE L2 3186 3311 -2 835 152 0 8 chr6 4937772 4937897 -177477345 + FLAM_C SINE Alu 1 124 -19 1869 83 8 12 chr6 4937955 4938209 -177477033 + AluY SINE Alu 43 295 -16 975 159 6 29 chr6 4938210 4938380 -177476862 + AluJo/FRAM SINE Alu 138 303 -9 1027 258 54 81 chr6 4939364 4939918 -177475324 - MER34 LTR ERV1 -3 539 1 474 179 36 27 chr6 4940437 4940549 -177474693 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4940568 4940607 -177474635 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4940907 4940968 -177474274 + (TA)n Simple_repeat Simple_repeat 2 62 0 260 250 62 0 chr6 4941002 4941066 -177474176 - U6 snRNA snRNA -1 106 39 220 254 112 52 chr6 4941675 4941809 -177473433 - MIR3 SINE MIR -62 146 5 347 283 143 56 chr6 4941854 4942140 -177473102 - MLT1K LTR MaLR -1 587 277 2239 92 10 26 chr6 4942254 4942559 -177472683 + AluSp SINE Alu 1 300 -13 406 196 27 9 chr6 4945919 4946031 -177469211 - L1MA4A LINE L1 -1 6302 6189 1517 157 19 74 chr6 4947487 4947811 -177467431 - AluJb SINE Alu -6 306 1 230 342 56 51 chr6 4949586 4949708 -177465534 + L2 LINE L2 2653 2773 -499 2136 102 3 16 chr6 4949708 4950011 -177465231 - AluY SINE Alu -12 299 1 230 342 56 51 chr6 4950011 4950259 -177464983 + L2 LINE L2 2773 3059 -213 2298 55 41 17 chr6 4950971 4951264 -177463978 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4951803 4951861 -177463381 + AT_rich Low_complexity Low_complexity 1 58 0 690 241 76 101 chr6 4951908 4952382 -177462860 - LTR37B LTR ERV1 -2 466 5 1825 156 138 31 chr6 4952736 4953121 -177462121 - MSTC LTR MaLR -2 426 1 28 0 0 0 chr6 4953392 4953420 -177461822 + AT_rich Low_complexity Low_complexity 1 28 0 935 206 57 0 chr6 4953827 4954036 -177461206 - MER58A DNA MER1_type -1 223 3 331 192 111 134 chr6 4954112 4954284 -177460958 - L1MCc LINE L1 -5396 1027 860 373 335 78 9 chr6 4954538 4954768 -177460474 - L1MCc LINE L1 -6091 332 87 5142 138 22 23 chr6 4955520 4956393 -177458849 + MER4D LTR ERV1 1 872 0 1027 154 104 36 chr6 4959544 4959764 -177455478 - MER46A DNA MER2_type 0 236 2 2073 209 112 6 chr6 4959950 4960485 -177454757 + L1MB4 LINE L1 5589 6180 0 1977 132 11 0 chr6 4960774 4961055 -177454187 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4961135 4961161 -177454081 + (TG)n Simple_repeat Simple_repeat 1 26 0 208 204 0 0 chr6 4961955 4961999 -177453243 - L2 LINE L2 -7 3306 3263 4044 135 67 21 chr6 4963098 4963845 -177451397 - L1MA5 LINE L1 -3 6297 5517 1834 35 0 31 chr6 4963845 4964071 -177451171 + AluY SINE Alu 92 310 -1 194 281 18 0 chr6 4964091 4964148 -177451094 + MER5B DNA MER1_type 121 178 0 2387 50 10 17 chr6 4965539 4965836 -177449406 - AluY SINE Alu 0 311 17 392 242 144 70 chr6 4967142 4967427 -177447815 - L1ME4a LINE L1 -270 5851 5546 291 54 0 0 chr6 4967563 4967600 -177447642 + (TG)n Simple_repeat Simple_repeat 2 38 0 1677 118 126 16 chr6 4967601 4967855 -177447387 - AluSx SINE Alu -26 286 5 195 42 0 0 chr6 4968392 4968416 -177446826 + (TG)n Simple_repeat Simple_repeat 1 24 0 767 284 119 33 chr6 4969146 4969633 -177445609 - L1MEc LINE L1 -4559 1658 1108 354 45 0 0 chr6 4969633 4969677 -177445565 + (CA)n Simple_repeat Simple_repeat 2 45 0 767 284 119 33 chr6 4969677 4969794 -177445448 - L1MEc LINE L1 -5109 1108 1002 1415 288 69 47 chr6 4969838 4970789 -177444453 - L1MEc LINE L1 -5381 1015 44 207 292 191 0 chr6 4971204 4971293 -177443949 + MIR3 SINE MIR 75 180 -28 505 319 98 25 chr6 4971297 4971654 -177443588 - L2 LINE L2 -20 3293 2911 1543 201 25 38 chr6 4972293 4972661 -177442581 - MLT1A1 LTR MaLR -2 363 1 26 30 0 0 chr6 4974457 4974490 -177440752 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4976652 4976730 -177438512 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4977277 4977402 -177437840 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4977414 4977708 -177437534 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4978411 4978456 -177436786 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4978653 4978882 -177436360 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4984169 4984191 -177431051 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4984672 4984793 -177430449 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4984836 4984986 -177430256 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4985081 4985730 -177429512 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4986431 4986551 -177428691 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4987292 4987502 -177427740 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4988147 4988190 -177427052 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4988947 4989152 -177426090 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4991074 4991353 -177423889 + AluY SINE Alu 25 299 -12 1823 133 0 4 chr6 4993176 4993455 -177421787 - AluSx SINE Alu -16 296 19 2058 110 0 0 chr6 4994014 4994306 -177420936 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4994310 4994332 -177420910 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4995923 4995951 -177419291 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4996780 4996915 -177418327 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4997197 4997515 -177417727 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4998358 4998404 -177416838 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4998859 4998986 -177416256 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4999639 5000818 -177414424 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 5000818 5000909 -177414333 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 5000909 5001710 -177413532 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 5001747 5002248 -177412994 + L1MEc LINE L1 2102 2583 -3632 473 115 13 0 chr6 5002250 5002328 -177412914 + (GGA)n Simple_repeat Simple_repeat 3 81 0 804 263 251 49 chr6 5002339 5002825 -177412417 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 5002856 5002914 -177412328 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 5003122 5003231 -177412011 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 5003340 5003648 -177411594 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 5004253 5004541 -177410701 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 5004719 5005017 -177410225 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 5006062 5006136 -177409106 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 5006155 5006369 -177408873 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 5007459 5007556 -177407686 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 5007556 5007638 -177407604 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 5007638 5007772 -177407470 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 5007772 5007817 -177407425 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 5007817 5007854 -177407388 + AT_rich Low_complexity Low_complexity 1 37 0 2032 249 104 18 chr6 5007870 5008267 -177406975 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 5008267 5008550 -177406692 + AluJo SINE Alu 1 292 -20 2032 249 104 18 chr6 5008550 5008938 -177406304 + L1ME3A LINE L1 5651 6152 -18 315 0 0 0 chr6 5008938 5008973 -177406269 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr6 5008972 5009001 -177406241 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 2083 115 0 0 chr6 5009001 5009297 -177405945 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 5009353 5009631 -177405611 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 5009666 5009965 -177405277 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 5010596 5010967 -177404275 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 5011037 5011186 -177404056 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 5011222 5011246 -177403996 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 5011274 5011360 -177403882 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 5011378 5011409 -177403833 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 5011549 5011604 -177403638 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 5011971 5012151 -177403091 - MLT1B LTR MaLR -1 389 208 303 229 14 0 chr6 5012195 5012265 -177402977 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 5012265 5012339 -177402903 - MLT1B LTR MaLR -101 289 222 294 29 0 0 chr6 5012339 5012374 -177402868 + (TA)n Simple_repeat Simple_repeat 2 36 0 1563 108 0 0 chr6 5012374 5012588 -177402654 - AluSg/x SINE Alu -27 285 72 1289 156 100 26 chr6 5012588 5012781 -177402461 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 5013404 5013625 -177401617 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 5013630 5013862 -177401380 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 5013923 5014216 -177401026 + AluSx SINE Alu 1 293 -19 5427 103 1 5 chr6 5016447 5017217 -177398025 - L1PB2 LINE L1 0 6151 5385 1271 67 0 0 chr6 5017217 5017382 -177397860 - AluY SINE Alu 0 311 147 6386 184 7 16 chr6 5017382 5018737 -177396505 - L1PB2 LINE L1 -745 5401 4059 265 281 45 11 chr6 5019137 5019226 -177396016 + MIR SINE MIR 155 246 -16 423 38 0 0 chr6 5019446 5019499 -177395743 + (TC)n Simple_repeat Simple_repeat 1 53 0 216 0 0 0 chr6 5019498 5019522 -177395720 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 696 172 15 1 chr6 5019834 5019977 -177395265 + L1 LINE L1 3607 3756 -2390 3110 147 8 0 chr6 5020488 5020972 -177394270 + L1 LINE L1 3742 4229 -1917 272 259 0 0 chr6 5020991 5021049 -177394193 - AluSc SINE Alu -108 191 134 2261 103 3 0 chr6 5021055 5021365 -177393877 - AluSx SINE Alu -1 311 1 740 118 118 33 chr6 5021368 5021494 -177393748 - L1MB4 LINE L1 -213 5967 5824 2901 168 75 51 chr6 5021494 5022204 -177393038 - LTR8A LTR ERV1 0 727 1 740 118 118 33 chr6 5022204 5022230 -177393012 - L1MB4 LINE L1 -356 5824 5802 974 162 17 17 chr6 5022238 5022411 -177392831 + AluJo SINE Alu 85 257 -55 752 148 0 0 chr6 5022414 5022529 -177392713 + AluJb SINE Alu 198 312 0 401 353 77 23 chr6 5022536 5022641 -177392601 + MIR SINE MIR 30 128 -134 1958 216 59 22 chr6 5022641 5023182 -177392060 - MER34B LTR ERV1 0 565 5 401 353 77 23 chr6 5023182 5023297 -177391945 + MIR SINE MIR 128 262 0 2240 82 0 3 chr6 5023668 5023962 -177391280 - AluSc SINE Alu -16 293 1 2380 78 0 0 chr6 5025335 5025643 -177389599 - AluY SINE Alu -3 308 1 3594 163 123 101 chr6 5026356 5026784 -177388458 + L1MC3 LINE L1 6687 7104 -681 244 279 0 25 chr6 5026784 5026863 -177388379 + MLT1F1 LTR MaLR 45 121 -446 3594 163 123 101 chr6 5026863 5027347 -177387895 + L1MC3 LINE L1 7104 7705 -80 279 0 0 0 chr6 5027347 5027378 -177387864 + (TG)n Simple_repeat Simple_repeat 2 32 0 3594 163 123 101 chr6 5027378 5027448 -177387794 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 5027449 5027745 -177387497 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 5027901 5028260 -177386982 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 5029108 5030204 -177385038 - L1MD2 LINE L1 -22 6320 5238 4441 229 93 40 chr6 5030204 5030396 -177384846 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 5030396 5030417 -177384825 + (CA)n Simple_repeat Simple_repeat 2 22 0 4441 229 93 40 chr6 5030417 5031443 -177383799 - L1MD2 LINE L1 -1512 4617 3467 1657 189 14 0 chr6 5031443 5031728 -177383514 - AluJo SINE Alu -23 289 1 4441 229 93 40 chr6 5031728 5032162 -177383080 - L1MD2 LINE L1 -2662 3467 3057 588 203 74 0 chr6 5032149 5032297 -177382945 - L1MD2 LINE L1 -3302 2827 2669 * 799 251 38 13 chr6 5032418 5032653 -177382589 - L1MD2 LINE L1 -3450 2679 2439 2429 234 105 21 chr6 5032657 5032691 -177382551 - L1MD2 LINE L1 -3876 2434 2404 2251 107 117 35 chr6 5032691 5033003 -177382239 + MSTA LTR MaLR 1 353 -75 1766 137 20 93 chr6 5033003 5033346 -177381896 + AluYb8 SINE Alu 1 318 0 2251 107 117 35 chr6 5033346 5033427 -177381815 + MSTA LTR MaLR 353 426 -2 2429 234 105 21 chr6 5033427 5034205 -177381037 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 5034199 5034485 -177380757 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 5034528 5034887 -177380355 - L1MD2 LINE L1 -5487 632 270 2280 23 0 0 chr6 5035089 5035351 -177379891 + L1PA4 LINE L1 5891 6152 -3 250 262 285 12 chr6 5035493 5035665 -177379577 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 5036004 5036026 -177379216 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 5037810 5038091 -177377151 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 5038091 5038590 -177376652 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 5038590 5038619 -177376623 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 5038619 5038657 -177376585 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 5038657 5038806 -177376436 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 5039524 5039545 -177375697 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 5040236 5040506 -177374736 - AluSc SINE Alu -4 305 36 2242 88 10 3 chr6 5041138 5041432 -177373810 - AluSx SINE Alu -16 296 1 281 365 0 0 chr6 5041755 5041925 -177373317 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 5042124 5042242 -177373000 + MIR SINE MIR 97 230 -32 2662 33 3 0 chr6 5044011 5044318 -177370924 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 5044694 5044745 -177370497 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 5045999 5046305 -177368937 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 5046359 5046654 -177368588 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 5047278 5047600 -177367642 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 5047931 5048000 -177367242 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 5048017 5048330 -177366912 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 5048822 5049139 -177366103 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 5049145 5049486 -177365756 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 5049666 5049957 -177365285 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 5050332 5050437 -177364805 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 5050629 5050805 -177364437 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 5051008 5051134 -177364108 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 5051134 5051422 -177363820 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 5051422 5051640 -177363602 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 5051712 5051991 -177363251 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 5052097 5052181 -177363061 - Alu SINE Alu 0 310 227 225 0 0 0 chr6 5052789 5052814 -177362428 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 5052828 5052948 -177362294 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 5052949 5053179 -177362063 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 5053211 5053278 -177361964 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 5053280 5053323 -177361919 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 5054112 5054407 -177360835 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 5054683 5054954 -177360288 - AluJb SINE Alu -30 282 3 1798 234 121 10 chr6 5055210 5055697 -177359545 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 5056383 5056559 -177358683 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 5057009 5057844 -177357398 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 5057853 5058141 -177357101 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 5058145 5058216 -177357026 - Charlie1 DNA MER1_type -2011 750 680 18607 125 22 56 chr6 5058436 5061750 -177353492 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 5061763 5062173 -177353069 - L1ME LINE L1 -678 5486 5045 955 143 0 0 chr6 5062309 5062442 -177352800 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 5062445 5062701 -177352541 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 5062701 5062729 -177352513 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 5062729 5062762 -177352480 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 5062762 5063004 -177352238 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 5063004 5063092 -177352150 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 5063095 5063168 -177352074 - HERVL74 LTR ERVL -4071 1614 1547 1902 142 0 23 chr6 5063168 5063495 -177351747 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 5063495 5063836 -177351406 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 5063836 5063860 -177351382 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 5064108 5064430 -177350812 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 5065801 5066082 -177349160 + AluJo SINE Alu 1 282 -30 241 156 16 16 chr6 5066087 5066151 -177349091 + GA-rich Low_complexity Low_complexity 2 65 0 200 250 0 59 chr6 5067766 5067834 -177347408 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 5067853 5068057 -177347185 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 5068057 5068375 -177346867 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 5068375 5068502 -177346740 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 5068985 5069080 -177346162 - L2 LINE L2 -533 2781 2691 2165 100 3 7 chr6 5069101 5069390 -177345852 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 5069390 5069415 -177345827 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 5069415 5069451 -177345791 + Alu SINE Alu 253 288 -14 306 73 0 0 chr6 5069451 5069492 -177345750 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2519 146 16 81 chr6 5069587 5069637 -177345605 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 5069637 5069998 -177345244 + MLT1A1 LTR MaLR 1 365 0 2519 146 16 81 chr6 5069998 5070502 -177344740 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 5070536 5070823 -177344419 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 5070840 5070983 -177344259 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 5071766 5071870 -177343372 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 5072407 5072601 -177342641 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 5073654 5073764 -177341478 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 5073816 5073902 -177341340 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 5074465 5074654 -177340588 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 5074726 5075169 -177340073 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 5075302 5075713 -177339529 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 5075721 5075751 -177339491 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 5076065 5076206 -177339036 - MER82 DNA MER2_type -510 143 1 263 106 43 0 chr6 5076510 5076557 -177338685 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 5076703 5076741 -177338501 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 5076846 5076908 -177338334 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 5078255 5078369 -177336873 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 5078688 5079097 -177336145 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 5079097 5079289 -177335953 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 5079294 5079381 -177335861 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 5079405 5079538 -177335704 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 5079538 5079780 -177335462 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 5079781 5079942 -177335300 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 5080001 5080163 -177335079 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 5081320 5081578 -177333664 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 5081566 5082219 -177333023 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 5082249 5082465 -177332777 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 5082692 5083065 -177332177 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 5083098 5083413 -177331829 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 5084059 5084111 -177331131 - MLT1H1 LTR MaLR -3 552 501 2460 156 10 2 chr6 5084111 5084528 -177330714 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 5085105 5085135 -177330107 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 5085135 5085406 -177329836 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 5085406 5085794 -177329448 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 5085794 5086087 -177329155 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 5086087 5086189 -177329053 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 5086265 5086354 -177328888 - MER81 DNA DNA -27 87 1 450 0 0 0 chr6 5087273 5087323 -177327919 + (TG)n Simple_repeat Simple_repeat 2 51 0 1200 157 47 120 chr6 5087327 5087626 -177327616 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 5088525 5088613 -177326629 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 5088661 5088956 -177326286 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 5089053 5090661 -177324581 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 5090661 5091096 -177324146 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 5091096 5091446 -177323796 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 5091449 5091586 -177323656 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 5091615 5091754 -177323488 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 5092388 5092471 -177322771 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 5092473 5092650 -177322592 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 5093188 5093407 -177321835 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 5093557 5094390 -177320852 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 5094917 5094979 -177320263 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 5094988 5095151 -177320091 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 5095158 5096062 -177319180 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 5096066 5096237 -177319005 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 5096423 5096725 -177318517 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 5096753 5097040 -177318202 - AluJo SINE Alu -17 295 1 1823 178 0 0 chr6 5098047 5098350 -177316892 + AluJo SINE Alu 1 303 -9 543 211 181 15 chr6 5098592 5098791 -177316451 + LTR48 LTR ERV1 490 721 -66 1037 152 0 18 chr6 5098791 5098956 -177316286 - FRAM SINE Alu -15 161 1 482 133 13 0 chr6 5098956 5099031 -177316211 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 5099041 5099246 -177315996 - L1MC/D LINE L1 -2021 5787 5559 1907 133 0 84 chr6 5099487 5099819 -177315423 - AluSx SINE Alu -8 304 1 571 189 28 56 chr6 5100310 5100453 -177314789 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 5100588 5100824 -177314418 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 5101067 5101244 -177313998 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 5101245 5101335 -177313907 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 5101336 5101443 -177313799 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 5103344 5103564 -177311678 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 5103566 5103695 -177311547 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 5103702 5104292 -177310950 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 5104296 5104365 -177310877 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 5106033 5106054 -177309188 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 5106219 5106673 -177308569 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 5107712 5107787 -177307455 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 5107793 5108120 -177307122 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 5108181 5108368 -177306874 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 5108408 5108445 -177306797 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 5108445 5108475 -177306767 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 5108475 5108770 -177306472 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 5108770 5108946 -177306296 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 5108982 5109181 -177306061 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 5109367 5109506 -177305736 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 5109585 5109882 -177305360 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 5109902 5110194 -177305048 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 5110326 5110347 -177304895 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 5110432 5110521 -177304721 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 5110534 5110641 -177304601 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 5110649 5110936 -177304306 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 5110936 5111559 -177303683 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 5111568 5111658 -177303584 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 5111764 5112016 -177303226 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 5112085 5112354 -177302888 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 5112355 5112386 -177302856 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 5112470 5112605 -177302637 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 5112748 5112886 -177302356 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 5112903 5113212 -177302030 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 5113389 5113414 -177301828 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 5113421 5113609 -177301633 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 5113615 5113691 -177301551 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 5113771 5113808 -177301434 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 5113828 5114242 -177301000 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 5114734 5114772 -177300470 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 5114933 5115237 -177300005 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 5115352 5115497 -177299745 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 5115659 5115790 -177299452 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 5115865 5116037 -177299205 - MLT1L LTR MaLR -204 411 222 298 286 114 23 chr6 5117310 5117485 -177297757 + MIR SINE MIR 28 218 -44 30 27 0 0 chr6 5117910 5117947 -177297295 + AT_rich Low_complexity Low_complexity 1 37 0 1744 212 48 75 chr6 5117967 5118524 -177296718 - MER34 LTR ERV1 0 542 1 545 181 296 35 chr6 5119835 5120034 -177295208 + MLT1G1 LTR MaLR 340 595 0 367 283 33 7 chr6 5120438 5120590 -177294652 + L2 LINE L2 2006 2161 -1153 301 284 0 0 chr6 5120617 5120684 -177294558 + MER21B LTR ERV1 13 79 -784 1274 227 89 20 chr6 5120775 5121342 -177293900 + MER21B LTR ERV1 98 834 -97 244 373 85 27 chr6 5121346 5121759 -177293483 + L2 LINE L2 2334 2770 -544 344 190 25 13 chr6 5122092 5122171 -177293071 - MER96 DNA MER1_type? -90 85 6 384 131 131 164 chr6 5122888 5122980 -177292262 + MER5A DNA MER1_type 13 98 -91 682 172 0 8 chr6 5122980 5123102 -177292140 + FLAM_A SINE Alu 1 121 -12 384 131 131 164 chr6 5123102 5123192 -177292050 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 5124179 5124221 -177291021 + GC_rich Low_complexity Low_complexity 1 42 0 1441 182 22 80 chr6 5126975 5127084 -177288158 + MER58B DNA MER1_type 1 115 -2305 2330 103 3 0 chr6 5127084 5127386 -177287856 - AluSq SINE Alu -10 303 1 1441 182 22 80 chr6 5127386 5127638 -177287604 + MER58B DNA MER1_type 115 341 0 21 36 0 0 chr6 5128321 5128349 -177286893 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 5129007 5129044 -177286198 + (CA)n Simple_repeat Simple_repeat 2 39 0 2157 104 0 27 chr6 5131421 5131718 -177283524 + AluSg SINE Alu 1 289 -21 1844 180 0 7 chr6 5133191 5133497 -177281745 + AluJo SINE Alu 1 304 -8 1494 150 42 0 chr6 5133829 5134116 -177281126 + L1MA4 LINE L1 5997 6295 -5 413 225 167 8 chr6 5134137 5134257 -177280985 + MER20 DNA MER1_type 50 188 -31 2379 148 13 3 chr6 5134259 5134651 -177280591 - MER57A LTR ERV1 0 403 8 2128 118 0 7 chr6 5134687 5135006 -177280236 + AluSx SINE Alu 1 317 0 614 225 13 13 chr6 5135011 5135162 -177280080 + L1MC4a LINE L1 7657 7807 -1 1910 167 10 0 chr6 5135203 5135497 -177279745 + AluJo SINE Alu 5 301 -11 285 304 73 42 chr6 5135570 5135761 -177279481 + MIR SINE MIR 14 210 -52 1554 155 0 0 chr6 5136000 5136245 -177278997 - MSTC LTR MaLR -2 426 182 531 103 0 0 chr6 5136260 5136328 -177278914 - AluJ/FRAM SINE Alu -27 285 218 1750 158 7 31 chr6 5136350 5136642 -177278600 - AluJo SINE Alu -27 285 1 823 143 7 7 chr6 5136647 5136794 -177278448 - MSTC LTR MaLR -281 147 1 693 184 8 16 chr6 5136989 5137114 -177278128 - FLAM_A SINE Alu -9 124 1 489 245 123 0 chr6 5137477 5137632 -177277610 + L1ME LINE L1 5566 5739 -431 1661 164 0 18 chr6 5138198 5138374 -177276868 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5138374 5138420 -177276822 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1661 164 0 18 chr6 5138420 5138517 -177276725 - AluJb SINE Alu -187 125 28 831 167 0 0 chr6 5138601 5138733 -177276509 - FLAM_C SINE Alu 0 133 2 424 216 104 16 chr6 5138735 5138860 -177276382 - MIR SINE MIR -112 150 15 180 289 84 73 chr6 5139773 5140046 -177275196 + L2 LINE L2 2400 2675 -639 501 304 87 11 chr6 5140371 5140555 -177274687 - MIR SINE MIR -6 256 59 228 227 0 0 chr6 5140660 5140704 -177274538 - MIR SINE MIR -114 94 51 1317 177 92 44 chr6 5140790 5141084 -177274158 - AluJo SINE Alu -4 308 1 2185 106 7 13 chr6 5142622 5142925 -177272317 - AluSg SINE Alu -7 303 3 2080 144 0 3 chr6 5143269 5143567 -177271675 - AluJb SINE Alu -15 297 1 213 257 9 64 chr6 5143758 5143867 -177271375 + L2 LINE L2 2426 2528 -786 233 279 25 0 chr6 5144098 5144177 -177271065 - MLT1H LTR MaLR 0 549 469 417 298 198 49 chr6 5144377 5144522 -177270720 + L2 LINE L2 2569 2691 -581 2259 94 0 3 chr6 5144522 5144832 -177270410 + AluSx SINE Alu 1 309 0 417 298 198 49 chr6 5144832 5145291 -177269951 + L2 LINE L2 2691 3272 0 2020 82 78 4 chr6 5146737 5147006 -177268236 + AluSg SINE Alu 1 289 -21 267 288 49 103 chr6 5147458 5147642 -177267600 + MER5B DNA MER1_type 1 174 -4 382 222 25 0 chr6 5147709 5147790 -177267452 - MER5A DNA MER1_type -82 107 25 310 241 25 0 chr6 5149828 5149907 -177265335 - MER5A DNA MER1_type -100 89 9 431 255 221 7 chr6 5150449 5150598 -177264644 + L3 LINE CR1 1392 1572 -5 316 245 116 54 chr6 5150759 5150906 -177264336 + MIR3 SINE MIR 41 196 -12 281 237 96 74 chr6 5151234 5151369 -177263873 + L2 LINE L2 3133 3270 -2 1846 132 55 4 chr6 5152148 5152421 -177262821 + AluSg SINE Alu 5 291 -19 974 129 0 0 chr6 5152725 5152857 -177262385 - FLAM_A SINE Alu -1 132 1 767 255 45 52 chr6 5153149 5153416 -177261826 + MLT1J LTR MaLR 243 507 -4 1647 58 44 26 chr6 5153631 5153857 -177261385 + MER30 DNA MER1_type 1 230 0 777 273 124 12 chr6 5153889 5154292 -177260950 - L1ME4a LINE L1 -118 6003 5556 208 184 0 61 chr6 5155004 5155053 -177260189 + MIR SINE MIR 204 249 -13 2312 77 28 0 chr6 5156266 5156552 -177258690 + AluSc SINE Alu 1 294 -15 1023 160 0 0 chr6 5156724 5156874 -177258368 + FAM SINE Alu 12 161 -24 1954 137 0 27 chr6 5157087 5157408 -177257834 - AluSx SINE Alu 0 313 1 2066 147 3 10 chr6 5158496 5158810 -177256432 + AluSx SINE Alu 1 312 0 2042 122 21 7 chr6 5158899 5159186 -177256056 - AluSg SINE Alu -19 291 1 801 137 24 0 chr6 5159364 5159488 -177255754 - LTR12 LTR ERV1 -229 485 359 268 236 0 0 chr6 5159488 5159560 -177255682 - LTR30 LTR ERV1 -98 624 553 1465 134 23 23 chr6 5159561 5159863 -177255379 - LTR12 LTR ERV1 -406 2032 55 268 211 0 0 chr6 5159863 5159915 -177255327 - LTR30 LTR ERV1 -670 52 1 431 191 0 0 chr6 5163304 5163372 -177251870 - AluJ/FLAM SINE Alu -243 69 2 219 289 24 24 chr6 5163781 5163864 -177251378 - MER5B DNA MER1_type -74 104 22 * 234 289 88 69 chr6 5163846 5164005 -177251237 + L2 LINE L2 3070 3231 -41 199 299 26 26 chr6 5164154 5164231 -177251011 + L2 LINE L2 2678 2754 -560 185 270 324 0 chr6 5164396 5164507 -177250735 + L2 LINE L2 3126 3272 0 2446 159 30 13 chr6 5165477 5165948 -177249294 + L1MB7 LINE L1 5645 6123 -61 2148 119 14 0 chr6 5165948 5166241 -177249001 - AluSx SINE Alu -15 297 1 989 113 0 0 chr6 5166243 5166376 -177248866 - AluJb SINE Alu -179 133 1 268 143 79 0 chr6 5166376 5166439 -177248803 + L1MB8 LINE L1 6111 6178 0 1010 186 64 25 chr6 5166512 5166792 -177248450 + MER33 DNA MER1_type 31 321 -3 690 217 7 0 chr6 5166898 5167050 -177248192 - L1MD2 LINE L1 -15 6344 6192 2147 200 47 12 chr6 5168234 5168720 -177246522 - MLT1D LTR MaLR 0 505 3 380 339 155 16 chr6 5170051 5170361 -177244881 + L1 LINE L1 2266 2618 -3528 849 173 0 0 chr6 5170409 5170542 -177244700 + FLAM_C SINE Alu 1 133 0 305 198 151 47 chr6 5170792 5170878 -177244364 + L1ME4a LINE L1 5801 5895 -226 279 339 48 60 chr6 5171156 5171404 -177243838 - MIR SINE MIR 0 262 18 195 42 0 0 chr6 5171405 5171429 -177243813 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 564 270 68 0 chr6 5172464 5172593 -177242649 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5172593 5173197 -177242045 - L1MB5 LINE L1 -6 6168 5542 564 270 68 0 chr6 5173197 5173230 -177242012 - MER5B DNA MER1_type -144 34 5 470 221 164 64 chr6 5173284 5173755 -177241487 + L1MC5 LINE L1 7398 7915 -46 2890 173 50 4 chr6 5174734 5175279 -177239963 - L1MB3 LINE L1 -10 6173 5604 498 280 156 9 chr6 5175381 5175599 -177239643 + MIR SINE MIR 1 250 -12 2909 182 18 2 chr6 5175819 5176369 -177238873 - L1MB7 LINE L1 -9 6175 5617 2093 149 0 9 chr6 5177193 5177508 -177237734 + AluJb SINE Alu 1 312 0 367 321 51 36 chr6 5177997 5178193 -177237049 - MIR SINE MIR 0 262 64 1510 156 57 4 chr6 5178525 5178788 -177236454 + MER57A LTR ERV1 1 277 -126 1016 138 33 0 chr6 5178828 5178980 -177236262 - AluJb SINE Alu -11 301 145 1576 142 24 0 chr6 5178986 5179233 -177236009 + AluJb SINE Alu 44 296 -16 658 202 8 0 chr6 5179234 5179363 -177235879 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5179724 5179788 -177235454 + L1MB4 LINE L1 6119 6180 0 307 239 86 0 chr6 5180273 5180388 -177234854 + MIR3 SINE MIR 51 176 -32 189 337 22 11 chr6 5180558 5180650 -177234592 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5180840 5180926 -177234316 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5181092 5181560 -177233682 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5183347 5183646 -177231596 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5184361 5184434 -177230808 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5184871 5184897 -177230345 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5185365 5185489 -177229753 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5185580 5185767 -177229475 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5187654 5187676 -177227566 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5188386 5188517 -177226725 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5189385 5189569 -177225673 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5190061 5190374 -177224868 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5190613 5190850 -177224392 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5190930 5191059 -177224183 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5191088 5191232 -177224010 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5192095 5192381 -177222861 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5192506 5192583 -177222659 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5193526 5193845 -177221397 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5193849 5193932 -177221310 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5194070 5194372 -177220870 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5197043 5197084 -177218158 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5197103 5197227 -177218015 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5197465 5197764 -177217478 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5198335 5198523 -177216719 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5199348 5199745 -177215497 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5200132 5200175 -177215067 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5201185 5201231 -177214011 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5201465 5201524 -177213718 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5201837 5202612 -177212630 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5202612 5202897 -177212345 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5202897 5202991 -177212251 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5202989 5203674 -177211568 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5203677 5203979 -177211263 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5204520 5204834 -177210408 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5205005 5205071 -177210171 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5205576 5205650 -177209592 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5205918 5206009 -177209233 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5206922 5207876 -177207366 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5207942 5208010 -177207232 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5208087 5208219 -177207023 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5208493 5208575 -177206667 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5209474 5209502 -177205740 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5209505 5209619 -177205623 - AluSg/x SINE Alu -25 287 174 475 265 111 17 chr6 5209739 5209920 -177205322 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5214589 5215059 -177200183 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5215059 5215354 -177199888 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5217011 5217151 -177198091 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5217158 5217329 -177197913 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5217438 5217459 -177197783 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5217523 5217825 -177197417 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5218034 5218090 -177197152 + (A)n Simple_repeat Simple_repeat 1 56 0 275 127 0 18 chr6 5218144 5218199 -177197043 - L1MB4 LINE L1 0 6180 6127 3053 151 21 36 chr6 5218220 5218836 -177196406 - L1MB3 LINE L1 0 6183 5577 314 287 129 25 chr6 5220747 5220949 -177194293 + L2 LINE L2 2154 2376 -938 1223 155 33 0 chr6 5222827 5223040 -177192202 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5223533 5223561 -177191681 + AT_rich Low_complexity Low_complexity 1 28 0 290 273 152 0 chr6 5223697 5223796 -177191446 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5224195 5224225 -177191017 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 362 243 135 9 chr6 5224620 5224731 -177190511 - MIR SINE MIR -130 132 8 231 232 73 66 chr6 5225444 5225595 -177189647 + L1PA6 LINE L1 4897 5048 -1098 2294 112 0 0 chr6 5225694 5225990 -177189252 + AluSx SINE Alu 2 297 -15 2376 172 103 4 chr6 5226269 5226758 -177188484 + L1PA6 LINE L1 5603 6154 0 304 269 15 75 chr6 5226758 5226892 -177188350 + L1MC4a LINE L1 5811 5936 -1872 1528 157 71 31 chr6 5227058 5227181 -177188061 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5227181 5227212 -177188030 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1528 157 71 31 chr6 5227212 5227382 -177187860 + AluJb SINE Alu 118 306 -6 454 251 199 9 chr6 5227545 5227756 -177187486 + MIR SINE MIR 12 262 0 1849 137 18 7 chr6 5227767 5228044 -177187198 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5228249 5228420 -177186822 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5229432 5229471 -177185771 + AT_rich Low_complexity Low_complexity 1 39 0 685 235 133 0 chr6 5229574 5229740 -177185502 + Tigger3(Golem) DNA MER2_type 1 188 -2841 357 313 137 16 chr6 5230006 5230255 -177184987 + L1ME4a LINE L1 5617 5895 -226 1243 244 217 6 chr6 5230624 5231099 -177184143 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5231735 5232031 -177183211 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5233014 5233068 -177182174 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5233494 5233560 -177181682 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5233718 5233879 -177181363 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5233949 5234114 -177181128 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5234320 5234651 -177180591 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5234786 5234871 -177180371 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5234950 5235156 -177180086 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5235395 5235556 -177179686 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5236383 5236694 -177178548 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5236882 5237213 -177178029 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5237847 5238540 -177176702 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5239708 5239864 -177175378 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5239988 5240025 -177175217 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5240832 5240978 -177174264 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5242954 5243168 -177172074 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5243405 5243519 -177171723 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5243538 5243811 -177171431 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5245197 5245335 -177169907 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5245695 5245839 -177169403 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5245909 5246027 -177169215 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5246763 5247057 -177168185 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5247957 5248066 -177167176 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5248188 5248634 -177166608 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5249484 5249823 -177165419 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5249853 5250140 -177165102 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5250142 5250458 -177164784 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5250607 5251217 -177164025 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5251565 5251852 -177163390 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5252254 5252577 -177162665 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5252672 5253326 -177161916 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5253407 5253456 -177161786 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5253456 5253753 -177161489 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5253753 5253894 -177161348 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5253894 5254205 -177161037 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5254205 5254233 -177161009 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5255706 5255728 -177159514 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5255760 5255781 -177159461 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5256170 5256401 -177158841 + AluSq SINE Alu 1 302 0 761 151 17 0 chr6 5258831 5258950 -177156292 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5259301 5259322 -177155920 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5259679 5259776 -177155466 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5260328 5260501 -177154741 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5261358 5261661 -177153581 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5261841 5262137 -177153105 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5262304 5262797 -177152445 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5266188 5266366 -177148876 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5266388 5266509 -177148733 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5266811 5266934 -177148308 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5267250 5267547 -177147695 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5267613 5267899 -177147343 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5267942 5268248 -177146994 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5268886 5268923 -177146319 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5269216 5269567 -177145675 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5270265 5270289 -177144953 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5270289 5270340 -177144902 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5270576 5270659 -177144583 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5271243 5271453 -177143789 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5271542 5271657 -177143585 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5271973 5272138 -177143104 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5273362 5273541 -177141701 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5273784 5274097 -177141145 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5275342 5275415 -177139827 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5276511 5276917 -177138325 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5277453 5277538 -177137704 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5277605 5277735 -177137507 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5277928 5278163 -177137079 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5278485 5279709 -177135533 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5279714 5279755 -177135487 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5280362 5280786 -177134456 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5280887 5281061 -177134181 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5281129 5281191 -177134051 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5281208 5281273 -177133969 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5281383 5281696 -177133546 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5281710 5281750 -177133492 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5281751 5281909 -177133333 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5281909 5282508 -177132734 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5282698 5283020 -177132222 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5283153 5283372 -177131870 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5283514 5283691 -177131551 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5284162 5284262 -177130980 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5285766 5285808 -177129434 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5287446 5287754 -177127488 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5289106 5289442 -177125800 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5289515 5289587 -177125655 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5289656 5289737 -177125505 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5289737 5289882 -177125360 - AluSq SINE Alu -168 144 1 1340 221 34 37 chr6 5289980 5290274 -177124968 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5290904 5290980 -177124262 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5291034 5291160 -177124082 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5291530 5291561 -177123681 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5291561 5291694 -177123548 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5291694 5291753 -177123489 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5292644 5292946 -177122296 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5292946 5294123 -177121119 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5294123 5294646 -177120596 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5295840 5296166 -177119076 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5296201 5296618 -177118624 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5296671 5296736 -177118506 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5296736 5296998 -177118244 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5296998 5297073 -177118169 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5297131 5297351 -177117891 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5297378 5297522 -177117720 + Tigger7 DNA MER2_type 2311 2433 -154 5997 151 37 16 chr6 5297700 5299121 -177116121 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5299121 5299329 -177115913 + Tigger7 DNA MER2_type 2290 2491 0 649 241 195 67 chr6 5299360 5299884 -177115358 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5299894 5300179 -177115063 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5300634 5300745 -177114497 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5301547 5301680 -177113562 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5303320 5303453 -177111789 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5304271 5304580 -177110662 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5304725 5304777 -177110465 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5304792 5305171 -177110071 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5305727 5305869 -177109373 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5306119 5306151 -177109091 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5306617 5306834 -177108408 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5308130 5308276 -177106966 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5308276 5308575 -177106667 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5308575 5308742 -177106500 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5308982 5309416 -177105826 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5311440 5311734 -177103508 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5313782 5313890 -177101352 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5314479 5315106 -177100136 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5315196 5315225 -177100017 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5315902 5316195 -177099047 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5316796 5316952 -177098290 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5317436 5318502 -177096740 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5319163 5319186 -177096056 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5319517 5320038 -177095204 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5320043 5320268 -177094974 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5321149 5321247 -177093995 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5321257 5321305 -177093937 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5321305 5321616 -177093626 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5321616 5322246 -177092996 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5322248 5322365 -177092877 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5322541 5322847 -177092395 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5322855 5322882 -177092360 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5323709 5323888 -177091354 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5323961 5324068 -177091174 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5324761 5325010 -177090232 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5325013 5325119 -177090123 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5325837 5326192 -177089050 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5326483 5326641 -177088601 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5326967 5327023 -177088219 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5327436 5327518 -177087724 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5327674 5327866 -177087376 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5328132 5328343 -177086899 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5329417 5329736 -177085506 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5330264 5330346 -177084896 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5330752 5330877 -177084365 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5333314 5333615 -177081627 - L2 LINE L2 -318 2954 2586 410 217 61 20 chr6 5333622 5333826 -177081416 - MER5C DNA MER1_type -2 322 52 1825 190 40 3 chr6 5333928 5334280 -177080962 - MLT1A1 LTR MaLR 0 365 1 206 394 10 20 chr6 5334286 5334385 -177080857 - L2 LINE L2 -38 3234 3137 * 258 316 0 10 chr6 5334381 5334479 -177080763 - L2 LINE L2 -756 2558 2462 872 281 72 102 chr6 5334775 5335717 -177079525 + L1MC4a LINE L1 4390 5303 -843 336 248 132 16 chr6 5335752 5335881 -177079361 + L1MC4a LINE L1 5333 5476 -2332 219 271 139 66 chr6 5335925 5336047 -177079195 + L2 LINE L2 3183 3313 0 584 322 47 13 chr6 5336096 5336413 -177078829 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5337422 5337451 -177077791 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5337918 5337991 -177077251 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5338192 5338222 -177077020 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 445 217 30 136 chr6 5338959 5339019 -177076223 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5339019 5339053 -177076189 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 445 217 30 136 chr6 5339053 5339190 -177076052 - MER5B DNA MER1_type -66 112 1 442 313 108 35 chr6 5339190 5339505 -177075737 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5340892 5340941 -177074301 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2470 221 129 53 chr6 5341571 5342611 -177072631 + L1MCb LINE L1 3 1121 -4924 1935 167 50 81 chr6 5342626 5342674 -177072568 - LTR58 LTR ERV1 -2 677 629 1855 173 3 3 chr6 5342674 5342975 -177072267 + AluJb SINE Alu 1 301 -11 1935 167 50 81 chr6 5342975 5343254 -177071988 - LTR58 LTR ERV1 -50 629 343 2341 81 0 37 chr6 5343254 5343576 -177071666 + AluSg SINE Alu 1 310 0 1935 167 50 81 chr6 5343576 5343694 -177071548 - LTR58 LTR ERV1 -336 343 248 1500 116 455 40 chr6 5343694 5344142 -177071100 - MER51A LTR ERV1 0 634 1 1935 167 50 81 chr6 5344142 5344238 -177071004 - LTR58 LTR ERV1 -431 248 151 4066 147 14 1 chr6 5344239 5344941 -177070301 + MER50 LTR ERV1 1 711 -23 365 147 44 0 chr6 5344947 5345015 -177070227 - LTR58 LTR ERV1 -534 145 75 728 147 19 45 chr6 5345017 5345173 -177070069 + MST-int LTR MaLR 382 533 -1118 1145 213 20 20 chr6 5345888 5346141 -177069101 - MLT1A1 LTR MaLR -4 361 109 226 287 69 23 chr6 5347198 5347285 -177067957 - L2 LINE L2 -1 3271 3181 2839 128 40 6 chr6 5348921 5349391 -177065851 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5349619 5349642 -177065600 + (T)n Simple_repeat Simple_repeat 1 23 0 428 332 105 26 chr6 5351008 5351360 -177063882 + L1MC/D LINE L1 5336 5715 -2093 2588 102 8 6 chr6 5352532 5352895 -177062347 + THE1B LTR MaLR 1 364 0 194 245 142 38 chr6 5353636 5353742 -177061500 + MIR SINE MIR 20 136 -72 1484 278 136 23 chr6 5354611 5355317 -177059925 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5355407 5355435 -177059807 + AT_rich Low_complexity Low_complexity 1 28 0 1772 184 3 0 chr6 5355999 5356298 -177058944 + AluJb SINE Alu 1 300 -12 548 272 29 59 chr6 5357118 5357357 -177057885 - MIR SINE MIR -12 250 19 673 279 71 16 chr6 5359414 5359736 -177055506 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5361656 5361679 -177053563 + AT_rich Low_complexity Low_complexity 1 23 0 1708 44 48 24 chr6 5361679 5361929 -177053313 - L1MA1 LINE L1 0 6302 6047 350 310 90 33 chr6 5361976 5362308 -177052934 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5362321 5362379 -177052863 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1352 216 91 32 chr6 5364526 5364606 -177050636 - MER95 LTR ERV 0 431 357 1759 168 7 26 chr6 5364606 5364910 -177050332 - AluJo SINE Alu -14 298 1 1352 216 91 32 chr6 5364910 5365236 -177050006 - MER95 LTR ERV -74 357 1 2209 60 0 8 chr6 5366041 5366309 -177048933 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5366364 5366412 -177048830 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5366412 5366433 -177048809 + (T)n Simple_repeat Simple_repeat 1 21 0 2230 132 0 0 chr6 5366683 5366994 -177048248 - AluSx SINE Alu -1 311 1 260 303 45 0 chr6 5367181 5367270 -177047972 - MIR3 SINE MIR -6 202 110 545 278 99 30 chr6 5367321 5367584 -177047658 + Tigger8 DNA MER2_type 24 304 -362 2301 84 3 0 chr6 5367666 5367953 -177047289 + AluSp SINE Alu 21 308 -5 2192 99 0 0 chr6 5368376 5368687 -177046555 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5369953 5370267 -177044975 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5371276 5371363 -177043879 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5371772 5371889 -177043353 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5372025 5372087 -177043155 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5372087 5372389 -177042853 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5372389 5372680 -177042562 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5372680 5372703 -177042539 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5372703 5373538 -177041704 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5373657 5373692 -177041550 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5373709 5373792 -177041450 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5373870 5374615 -177040627 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5374629 5374699 -177040543 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5374742 5375239 -177040003 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5375308 5375483 -177039759 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5375503 5375865 -177039377 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5375893 5376046 -177039196 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5377199 5377427 -177037815 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5377673 5377854 -177037388 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5377893 5377941 -177037301 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5377955 5379016 -177036226 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5379687 5379988 -177035254 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5379994 5380172 -177035070 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5380180 5380219 -177035023 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5380262 5380289 -177034953 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5380538 5380832 -177034410 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5380877 5380916 -177034326 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5381049 5381342 -177033900 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5381342 5381624 -177033618 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5381628 5381679 -177033563 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5381679 5382003 -177033239 - MER82 DNA MER2_type -300 353 8 185 286 0 0 chr6 5382926 5382968 -177032274 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5383361 5383384 -177031858 + AT_rich Low_complexity Low_complexity 1 23 0 2186 116 0 3 chr6 5384206 5384516 -177030726 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5385452 5385484 -177029758 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 201 333 33 17 chr6 5385553 5385613 -177029629 - L2 LINE L2 -93 3179 3119 1564 220 114 22 chr6 5386172 5386723 -177028519 - L1ME4a LINE L1 -7 6114 5513 188 313 67 47 chr6 5387389 5387539 -177027703 - MIR SINE MIR -1 261 109 3623 120 25 36 chr6 5387548 5388090 -177027152 - L1MA8 LINE L1 -426 5865 5328 2465 84 0 0 chr6 5388090 5388401 -177026841 - AluY SINE Alu 0 311 1 3623 120 25 36 chr6 5388401 5388549 -177026693 - L1MA8 LINE L1 -963 5328 5180 390 319 24 24 chr6 5389413 5389579 -177025663 - MIR SINE MIR -94 168 3 658 282 35 0 chr6 5389748 5389922 -177025320 - MER58A DNA MER1_type 0 224 45 1825 136 3 69 chr6 5389926 5390258 -177024984 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5390339 5390380 -177024862 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1809 136 6 73 chr6 5390493 5390823 -177024419 - AluJo SINE Alu 0 312 5 2421 129 90 5 chr6 5390835 5391246 -177023996 - Tigger2 DNA MER2_type 0 2718 2273 393 197 15 0 chr6 5391237 5391303 -177023939 - Tigger2 DNA MER2_type -2650 68 2 * 293 351 27 0 chr6 5391344 5391455 -177023787 + MIR SINE MIR 77 190 -72 397 292 34 46 chr6 5396098 5396278 -177018964 - MIR3 SINE MIR -64 144 12 420 291 157 13 chr6 5397004 5397386 -177017856 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5397469 5397492 -177017750 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5397498 5397576 -177017666 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 259 232 10 61 chr6 5397861 5397960 -177017282 + L1MC4 LINE L1 7291 7384 -658 352 255 75 9 chr6 5398543 5398649 -177016593 + L1MC5 LINE L1 7249 7361 -600 942 215 121 50 chr6 5398966 5399422 -177015820 + L1MC5 LINE L1 7430 7917 -44 1439 262 115 59 chr6 5399673 5400752 -177014490 + L1ME3A LINE L1 3521 4659 -1487 281 298 72 41 chr6 5400912 5401231 -177014011 + L1ME3A LINE L1 4903 5231 -915 468 313 101 2 chr6 5401433 5401690 -177013552 + L1ME3A LINE L1 5351 5628 -538 376 303 28 0 chr6 5401712 5401854 -177013388 + L1ME3A LINE L1 5740 5885 -285 250 259 0 0 chr6 5402169 5402223 -177013019 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5402700 5402722 -177012520 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5403142 5403182 -177012060 + AT_rich Low_complexity Low_complexity 1 40 0 233 245 0 0 chr6 5403374 5403423 -177011819 + Charlie1 DNA MER1_type 2713 2761 0 491 221 42 122 chr6 5404502 5404715 -177010527 - LTR41 LTR ERVL -2 771 576 689 169 37 7 chr6 5404975 5405111 -177010131 - LTR41 LTR ERVL -598 175 36 2227 72 11 0 chr6 5406142 5406475 -177008767 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5406549 5406602 -177008640 + (CA)n Simple_repeat Simple_repeat 2 54 0 1337 219 22 52 chr6 5407905 5408317 -177006925 - MLT2B1 LTR ERVL 0 414 1 288 326 23 38 chr6 5408612 5408744 -177006498 + MIR SINE MIR 20 149 -113 2369 99 0 13 chr6 5410592 5410905 -177004337 - AluSc SINE Alu 0 309 1 594 349 96 41 chr6 5411463 5412245 -177002997 - L2 LINE L2 -430 2884 2060 227 296 62 124 chr6 5412321 5412693 -177002549 - L2 LINE L2 -1610 1704 1356 780 211 83 6 chr6 5413492 5413648 -177001594 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5414132 5415198 -177000044 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5415859 5415882 -176999360 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5416213 5416734 -176998508 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5416739 5416964 -176998278 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5417845 5417943 -176997299 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5417953 5418001 -176997241 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5418001 5418312 -176996930 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5418312 5418942 -176996300 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5418944 5419061 -176996181 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5419237 5419543 -176995699 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5419551 5419578 -176995664 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5420405 5420584 -176994658 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5420657 5420764 -176994478 + AluSg/x SINE Alu 203 309 0 1800 84 0 16 chr6 5421457 5421706 -176993536 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5421709 5421815 -176993427 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5422533 5422888 -176992354 - AluJo SINE Alu -3 309 1 2182 92 0 24 chr6 5424779 5425094 -176990148 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5425375 5425557 -176989685 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5426160 5426321 -176988921 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5426385 5426691 -176988551 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5426691 5426797 -176988445 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5426902 5427199 -176988043 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5427848 5427942 -176987300 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5430152 5430778 -176984464 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5430826 5430987 -176984255 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5431245 5431335 -176983907 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5431417 5431454 -176983788 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5431494 5431790 -176983452 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5431887 5432016 -176983226 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5432016 5432078 -176983164 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5432078 5433388 -176981854 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5433388 5433553 -176981689 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5433553 5433800 -176981442 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5433784 5433893 -176981349 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5434551 5434595 -176980647 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5435238 5435261 -176979981 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5435338 5435561 -176979681 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5436824 5436945 -176978297 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5437131 5437259 -176977983 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5437638 5437678 -176977564 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5438176 5438280 -176976962 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5438482 5438526 -176976716 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5438487 5438532 -176976710 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5438804 5438830 -176976412 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5440265 5440521 -176974721 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5440524 5440545 -176974697 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5440605 5440903 -176974339 - MER2 DNA MER2_type 0 345 2 816 157 0 24 chr6 5442293 5442459 -176972783 - L1MC3 LINE L1 -8 7777 7616 25 31 0 0 chr6 5442748 5442780 -176972462 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5444259 5444568 -176970674 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5445616 5445800 -176969442 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5446990 5447050 -176968192 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5447131 5447208 -176968034 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5447208 5447359 -176967883 + (TA)n Simple_repeat Simple_repeat 2 156 0 32 26 0 0 chr6 5447371 5447410 -176967832 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5447763 5448051 -176967191 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5448583 5448621 -176966621 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5448630 5448926 -176966316 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5449453 5449739 -176965503 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5451517 5452021 -176963221 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5452098 5452244 -176962998 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5452244 5453582 -176961660 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5453582 5453850 -176961392 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5453850 5454735 -176960507 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5454842 5455007 -176960235 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5455007 5455036 -176960206 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5455036 5455171 -176960071 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5455247 5455472 -176959770 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5455822 5456301 -176958941 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5456362 5456555 -176958687 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5456607 5456679 -176958563 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5457410 5457436 -176957806 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5457896 5457928 -176957314 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5458288 5458468 -176956774 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5458471 5458551 -176956691 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5459109 5459165 -176956077 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5459165 5459489 -176955753 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5459489 5459727 -176955515 - MER46B DNA MER2_type -2547 184 52 2422 71 0 16 chr6 5459870 5460180 -176955062 - AluY SINE Alu -6 305 1 264 200 0 0 chr6 5460609 5460669 -176954573 - L1ME3 LINE L1 -8 6154 6095 * 1795 237 94 22 chr6 5460667 5461339 -176953903 - L1ME1 LINE L1 -21 6143 5435 288 0 0 0 chr6 5461432 5461464 -176953778 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5461464 5461533 -176953709 + L1ME LINE L1 5368 5441 -723 307 252 47 16 chr6 5461709 5461836 -176953406 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5462872 5462996 -176952246 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5463563 5463860 -176951382 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5464538 5464858 -176950384 - AluSx SINE Alu -1 311 1 224 265 0 0 chr6 5465013 5465062 -176950180 + (TAA)n Simple_repeat Simple_repeat 1 49 0 412 322 66 0 chr6 5465258 5465410 -176949832 - MIR SINE MIR -77 185 24 1019 146 0 13 chr6 5465517 5465675 -176949567 + AluJo SINE Alu 127 282 -30 261 0 0 0 chr6 5465678 5465707 -176949535 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 617 220 125 26 chr6 5466578 5466842 -176948400 + LTR16A LTR ERVL 83 372 -78 2693 215 78 35 chr6 5468645 5469208 -176946034 - L1ME1 LINE L1 0 6235 5698 2256 101 0 13 chr6 5469208 5469514 -176945728 - AluSg1 SINE Alu -7 302 1 2693 215 78 35 chr6 5469514 5469695 -176945547 - L1ME1 LINE L1 -537 5698 5526 2354 108 0 6 chr6 5469695 5470009 -176945233 - AluSx SINE Alu 0 312 1 2693 215 78 35 chr6 5470009 5470104 -176945138 - L1ME1 LINE L1 -709 5526 5437 1662 180 30 3 chr6 5470104 5470399 -176944843 - AluJb SINE Alu -9 303 1 2693 215 78 35 chr6 5470399 5471012 -176944230 - L1ME1 LINE L1 -798 5437 4726 * 3944 268 99 33 chr6 5470995 5471618 -176943624 - L1ME1 LINE L1 -4123 2273 1693 1764 156 0 36 chr6 5471618 5471920 -176943322 - AluJb SINE Alu -21 291 1 3944 268 99 33 chr6 5471920 5473188 -176942054 - L1ME1 LINE L1 -4703 1693 256 242 299 62 0 chr6 5473191 5473273 -176941969 - L1ME1 LINE L1 -6209 187 112 216 0 0 0 chr6 5473273 5473297 -176941945 + (TTA)n Simple_repeat Simple_repeat 1 24 0 242 299 62 0 chr6 5473297 5473358 -176941884 - L1ME1 LINE L1 -6284 112 35 2061 116 101 18 chr6 5474338 5474674 -176940568 - THE1B LTR MaLR 0 364 1 7263 140 22 18 chr6 5474674 5476318 -176938924 - THE1B-int LTR MaLR 0 1651 1 2085 108 108 21 chr6 5476318 5476653 -176938589 - THE1B LTR MaLR 0 364 1 380 283 53 84 chr6 5476865 5477091 -176938151 + MIR SINE MIR 39 257 -5 565 315 91 17 chr6 5477180 5477412 -176937830 - MIR SINE MIR 0 262 14 553 292 21 26 chr6 5478571 5478957 -176936285 + L1MC4a LINE L1 5534 5982 -1826 280 299 17 17 chr6 5480230 5480347 -176934895 - MIR SINE MIR -99 163 47 2069 150 0 0 chr6 5480961 5481254 -176933988 - AluSx SINE Alu -19 293 1 735 90 27 0 chr6 5481411 5481522 -176933720 - L1MA5 LINE L1 0 6300 6187 694 182 20 0 chr6 5481562 5481710 -176933532 + L1 LINE L1 4965 5115 -1031 28 29 0 0 chr6 5482717 5482752 -176932490 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5483218 5483579 -176931663 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5483606 5483701 -176931541 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5483852 5484160 -176931082 + AluJo SINE Alu 1 303 -9 762 169 21 21 chr6 5484024 5484166 -176931076 + AluJo/FRAM SINE Alu 168 309 -3 328 311 41 16 chr6 5484170 5484292 -176930950 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5484880 5484917 -176930325 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5486319 5486366 -176928876 + AT_rich Low_complexity Low_complexity 1 47 0 2051 87 11 0 chr6 5486391 5486656 -176928586 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5486656 5486819 -176928423 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5486844 5486869 -176928373 + AT_rich Low_complexity Low_complexity 1 25 0 463 289 34 39 chr6 5487462 5487666 -176927576 + MIR SINE MIR 46 248 -14 183 42 0 0 chr6 5488431 5488455 -176926787 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2094 115 0 7 chr6 5488455 5488742 -176926500 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5488742 5488764 -176926478 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5489045 5489149 -176926093 + CT-rich Low_complexity Low_complexity 2 107 0 305 324 176 9 chr6 5489260 5489482 -176925760 - MIR SINE MIR -1 261 3 186 349 40 84 chr6 5490774 5491022 -176924220 - L2 LINE L2 -27 3245 3009 306 283 116 52 chr6 5491022 5491195 -176924047 - MER5A DNA MER1_type -1 188 5 1375 202 27 34 chr6 5491228 5491666 -176923576 - L1ME1 LINE L1 -4 6162 5626 947 259 47 20 chr6 5491656 5492000 -176923242 - L1ME LINE L1 -3479 2601 2249 * 1039 268 97 67 chr6 5491997 5492973 -176922269 - L1ME LINE L1 -4310 1770 737 1451 149 40 4 chr6 5492973 5493201 -176922041 - MER46A DNA MER2_type 0 236 1 1039 268 97 67 chr6 5493201 5493942 -176921300 - L1ME LINE L1 -5343 737 20 252 214 29 14 chr6 5494146 5494216 -176921026 + CT-rich Low_complexity Low_complexity 3 73 0 261 253 74 74 chr6 5494398 5494734 -176920508 - L1ME4a LINE L1 -1 6120 5785 296 303 181 21 chr6 5494772 5494960 -176920282 - L1ME4a LINE L1 -422 5699 5482 716 174 0 58 chr6 5495012 5495150 -176920092 - FLAM_A SINE Alu -2 131 2 2325 113 0 0 chr6 5495238 5495549 -176919693 - AluSx SINE Alu -1 311 1 708 299 86 30 chr6 5495806 5496281 -176918961 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5496281 5496451 -176918791 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5496518 5496546 -176918696 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5496551 5496695 -176918547 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5497683 5498086 -176917156 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5498420 5498461 -176916781 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5498514 5498820 -176916422 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5498820 5498842 -176916400 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5498902 5499006 -176916236 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5499194 5499360 -176915882 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5499941 5500080 -176915162 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5500245 5500550 -176914692 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5500843 5501040 -176914202 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5501057 5501170 -176914072 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5501396 5501618 -176913624 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5501973 5502037 -176913205 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5502105 5502573 -176912669 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5502709 5503099 -176912143 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5503139 5503377 -176911865 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5503394 5503709 -176911533 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5503895 5503932 -176911310 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5503959 5504201 -176911041 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5504224 5504459 -176910783 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5504718 5505029 -176910213 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5505037 5505083 -176910159 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5506879 5506979 -176908263 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5508656 5508971 -176906271 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5509252 5509434 -176905808 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5510037 5510198 -176905044 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5510262 5510568 -176904674 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5510568 5510674 -176904568 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5510779 5511076 -176904166 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5511725 5511819 -176903423 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5514029 5514655 -176900587 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5514703 5514864 -176900378 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5515122 5515212 -176900030 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5515294 5515331 -176899911 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5515371 5515667 -176899575 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5515764 5515893 -176899349 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5515893 5515955 -176899287 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5515955 5517265 -176897977 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5517265 5517430 -176897812 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5517430 5517677 -176897565 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5517661 5517770 -176897472 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5518428 5518472 -176896770 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5519115 5519138 -176896104 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5519215 5519438 -176895804 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5520720 5520822 -176894420 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5521008 5521136 -176894106 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5521515 5521555 -176893687 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5522053 5522157 -176893085 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5522359 5522403 -176892839 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5522364 5522409 -176892833 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5522681 5522707 -176892535 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5524142 5524398 -176890844 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5524401 5524422 -176890820 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5524482 5524780 -176890462 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5526747 5526796 -176888446 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5527572 5527884 -176887358 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5528559 5528605 -176886637 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5528719 5528991 -176886251 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5528991 5529280 -176885962 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5529280 5529370 -176885872 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5529832 5530123 -176885119 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5530290 5530407 -176884835 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5530544 5530650 -176884592 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5530655 5530871 -176884371 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5530871 5530918 -176884324 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5531857 5532060 -176883182 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5532064 5532377 -176882865 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5532701 5532885 -176882357 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5534299 5534786 -176880456 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5536499 5536671 -176878571 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5536874 5537135 -176878107 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5537404 5537457 -176877785 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5537517 5537678 -176877564 + LTR16C LTR ERVL 320 487 -4 1681 172 44 0 chr6 5537724 5538037 -176877205 + AluSx SINE Alu 1 325 0 850 149 0 27 chr6 5538315 5538463 -176876779 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5538709 5538906 -176876336 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5539546 5539629 -176875613 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5539890 5540083 -176875159 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5540091 5540293 -176874949 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5540293 5540493 -176874749 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5540543 5540571 -176874671 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5541737 5541981 -176873261 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5541993 5542130 -176873112 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5542938 5543014 -176872228 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5543225 5543499 -176871743 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5543499 5543797 -176871445 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5543797 5543839 -176871403 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5544226 5544838 -176870404 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5544838 5545384 -176869858 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5545386 5545627 -176869615 - L1ME1 LINE L1 -633 5529 5285 292 243 43 14 chr6 5546874 5546944 -176868298 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5546981 5547055 -176868187 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5547401 5547566 -176867676 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5547879 5548109 -176867133 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5548443 5548467 -176866775 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5550785 5551147 -176864095 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5551181 5551310 -176863932 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5552066 5552102 -176863140 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5552796 5552908 -176862334 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5553231 5553448 -176861794 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5553784 5553934 -176861308 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5554504 5554535 -176860707 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5554959 5555002 -176860240 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5555261 5555299 -176859943 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5555567 5555670 -176859572 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5555804 5556122 -176859120 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5557487 5557564 -176857678 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5557564 5557701 -176857541 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5557701 5557734 -176857508 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5557733 5557762 -176857480 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5557734 5557871 -176857371 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5557876 5557911 -176857331 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5558282 5558909 -176856333 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5559151 5559295 -176855947 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5559423 5559495 -176855747 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5559795 5559986 -176855256 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5560186 5560222 -176855020 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5563250 5563403 -176851839 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5566060 5566426 -176848816 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5566441 5566566 -176848676 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5566567 5566642 -176848600 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5566910 5566996 -176848246 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5567068 5567135 -176848107 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5567273 5567618 -176847624 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5567590 5567701 -176847541 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5568416 5568436 -176846806 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5569096 5569379 -176845863 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5569743 5570055 -176845187 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5570290 5570624 -176844618 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5570810 5571007 -176844235 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5571548 5571653 -176843589 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5571660 5571952 -176843290 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5571980 5572165 -176843077 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5573088 5573110 -176842132 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5573586 5573817 -176841425 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5574040 5574066 -176841176 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5574529 5574559 -176840683 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5574935 5575029 -176840213 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5575429 5575458 -176839784 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5575760 5575855 -176839387 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5576374 5576485 -176838757 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5576574 5576709 -176838533 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5578922 5579132 -176836110 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5580933 5581243 -176833999 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5582510 5582538 -176832704 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5582538 5582638 -176832604 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5582851 5582919 -176832323 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5583142 5583413 -176831829 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5583415 5583528 -176831714 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5583638 5583932 -176831310 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5584052 5584444 -176830798 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5584480 5584961 -176830281 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5584969 5585311 -176829931 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5585312 5585567 -176829675 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5586796 5587110 -176828132 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5587082 5587139 -176828103 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5587817 5588117 -176827125 - L2 LINE L2 -14 3299 2996 262 305 11 21 chr6 5588337 5588432 -176826810 - MIR3 SINE MIR -9 199 106 2692 177 59 4 chr6 5588588 5589097 -176826145 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5589125 5589202 -176826040 + (CA)n Simple_repeat Simple_repeat 2 78 0 3373 186 10 46 chr6 5589216 5590323 -176824919 - L1MB4 LINE L1 -542 5632 3689 2192 77 70 0 chr6 5590371 5590657 -176824585 - AluY SINE Alu -5 306 1 215 341 0 0 chr6 5592177 5592259 -176822983 + CT-rich Low_complexity Low_complexity 3 84 0 2332 76 0 17 chr6 5593534 5593711 -176821531 - AluY SINE Alu -14 297 126 186 43 0 0 chr6 5593711 5593734 -176821508 + (TA)n Simple_repeat Simple_repeat 1 23 0 2332 76 0 17 chr6 5593734 5593858 -176821384 - AluY SINE Alu -185 126 1 479 257 18 0 chr6 5595493 5595606 -176819636 + MER5C DNA MER1_type 9 123 -201 1495 202 73 41 chr6 5595651 5595970 -176819272 - L1ME1 LINE L1 -5 6161 5854 4398 133 1 22 chr6 5595970 5596618 -176818624 - MER41B LTR ERV1 0 635 1 1495 202 73 41 chr6 5596618 5596798 -176818444 - L1ME1 LINE L1 -312 5854 5595 1097 207 58 5 chr6 5596798 5597006 -176818236 - MER20 DNA MER1_type 0 219 1 1495 202 73 41 chr6 5597006 5597093 -176818149 - L1ME1 LINE L1 -571 5595 5512 1309 203 16 10 chr6 5597087 5597398 -176817844 - L1MB4 LINE L1 -3178 2968 2656 * 2003 113 39 0 chr6 5597704 5597987 -176817255 - AluSg SINE Alu -16 294 1 943 285 188 4 chr6 5598216 5598710 -176816532 - MLT1E LTR MaLR -8 585 1 259 24 24 24 chr6 5599751 5599792 -176815450 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 2850 52 0 0 chr6 5599792 5600137 -176815105 - L1PA8 LINE L1 -24 6148 5804 2163 114 0 0 chr6 5600172 5600453 -176814789 + AluSq SINE Alu 1 281 -32 2064 88 26 4 chr6 5600557 5600830 -176814412 - AluSg SINE Alu -31 279 1 525 263 35 77 chr6 5600831 5601210 -176814032 - L1MCc LINE L1 -4889 1534 1459 2129 124 0 0 chr6 5601210 5601532 -176813710 - AluSx SINE Alu 0 322 1 525 263 35 77 chr6 5601532 5601803 -176813439 - L1MCc LINE L1 -4964 1459 1178 2952 71 3 0 chr6 5602201 5602555 -176812687 - THE1A LTR MaLR 0 355 1 1466 211 70 63 chr6 5603270 5603463 -176811779 - MLT1D LTR MaLR -2 503 313 2268 59 0 4 chr6 5603463 5603735 -176811507 - L1PA6 LINE L1 0 6154 5884 1466 211 70 63 chr6 5603735 5603939 -176811303 - MLT1D LTR MaLR -192 313 103 400 190 10 80 chr6 5603990 5604090 -176811152 - MLT1D LTR MaLR -410 95 3 1428 181 63 112 chr6 5604092 5604502 -176810740 - MLT1D-int LTR MaLR 0 1371 982 1362 191 40 27 chr6 5604547 5604846 -176810396 - AluJb SINE Alu -4 308 6 2785 208 58 88 chr6 5604945 5605856 -176809386 - MLT1D-int LTR MaLR -486 885 2 2182 208 62 15 chr6 5605858 5606338 -176808904 - MLT1D LTR MaLR -1 504 2 202 333 0 13 chr6 5607675 5607753 -176807489 - MIR SINE MIR -73 189 113 702 166 159 7 chr6 5607992 5608143 -176807099 - MER5A DNA MER1_type -6 183 10 490 305 81 20 chr6 5608894 5609140 -176806102 - MIR SINE MIR -1 261 1 2289 138 14 11 chr6 5609260 5609614 -176805628 + THE1A LTR MaLR 1 355 0 281 242 0 0 chr6 5610222 5610288 -176804954 + MIR SINE MIR 197 262 0 228 67 0 0 chr6 5610958 5610988 -176804254 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 274 242 0 0 chr6 5611475 5611541 -176803701 - MLT1L LTR MaLR -1 614 549 463 276 112 12 chr6 5611589 5611759 -176803483 - MLT1L LTR MaLR -204 411 225 1830 67 0 59 chr6 5612799 5613090 -176802152 - AluY SINE Alu 0 318 43 1780 157 10 16 chr6 5613401 5613714 -176801528 + AluJo SINE Alu 1 311 -1 655 307 84 21 chr6 5613918 5614299 -176800943 + L1M4 LINE L1 4615 5019 -1127 1469 294 25 23 chr6 5614481 5615128 -176800114 - L1M4 LINE L1 -2123 4023 3373 2048 142 0 6 chr6 5615128 5615439 -176799803 + AluSx SINE Alu 1 309 -3 1469 294 25 23 chr6 5615439 5615477 -176799765 - L1M4 LINE L1 -2773 3373 3337 21 36 0 0 chr6 5615521 5615549 -176799693 + AT_rich Low_complexity Low_complexity 1 28 0 498 311 81 43 chr6 5615577 5616280 -176798962 - L1MEc LINE L1 -734 1609 443 297 0 0 0 chr6 5616979 5617012 -176798230 + (CA)n Simple_repeat Simple_repeat 2 34 0 1359 111 11 0 chr6 5617077 5617267 -176797975 - AluSq SINE Alu -1 312 121 3342 122 29 10 chr6 5617286 5617796 -176797446 - LTR9B LTR ERV1 -83 561 42 17046 93 20 10 chr6 5617797 5620132 -176795110 - HUERS-P3b LTR ERV1 -1 7417 4984 396 227 118 17 chr6 5620467 5620586 -176794656 + L2 LINE L2 3142 3272 0 248 238 20 30 chr6 5620757 5620858 -176794384 + (CAGAGA)n Simple_repeat Simple_repeat 2 101 0 230 368 98 0 chr6 5621021 5621195 -176794047 - MIR3 SINE MIR -11 197 7 1757 118 18 4 chr6 5621575 5621854 -176793388 + L1M3 LINE L1 5290 5572 -611 840 226 0 0 chr6 5621880 5622035 -176793207 - LTR8 LTR ERV1 -536 155 1 6099 90 4 5 chr6 5622035 5622837 -176792405 + HUERS-P3b LTR ERV1 3073 3873 -3545 1866 98 11 11 chr6 5622829 5623104 -176792138 + HUERS-P3b LTR ERV1 4713 4987 -2431 * 2708 122 48 24 chr6 5625094 5625512 -176789730 - MSTA LTR MaLR 0 428 1 429 290 9 0 chr6 5625741 5625848 -176789394 + MER5A DNA MER1_type 82 189 0 272 306 90 9 chr6 5626144 5626255 -176788987 - L2 LINE L2 0 3272 3153 230 218 0 18 chr6 5626316 5626371 -176788871 - MIR SINE MIR 0 262 209 201 292 250 7 chr6 5626449 5626593 -176788649 - MIR SINE MIR -62 200 22 1978 85 31 4 chr6 5627143 5627421 -176787821 - AluY SINE Alu 0 300 16 268 336 9 0 chr6 5627464 5627574 -176787668 + L1ME2 LINE L1 5709 5819 -1989 2191 216 147 21 chr6 5627610 5627800 -176787442 + MER82 DNA MER2_type 1 166 -487 1175 221 34 17 chr6 5627800 5628035 -176787207 + MER8 DNA MER2_type 1 239 0 2191 216 147 21 chr6 5628035 5628424 -176786818 + MER82 DNA MER2_type 166 653 0 2068 226 50 69 chr6 5628453 5629148 -176786094 - L1MC4 LINE L1 -156 7886 7205 2990 79 5 10 chr6 5629165 5629569 -176785673 + MLT2A1 LTR ERVL 3 404 -40 182 56 14 83 chr6 5629570 5629642 -176785600 + (TA)n Simple_repeat Simple_repeat 1 67 0 339 75 75 0 chr6 5629642 5629695 -176785547 + MLT2A1 LTR ERVL 397 453 0 786 178 11 123 chr6 5629696 5629965 -176785277 - L1MC4 LINE L1 -910 7132 6894 453 232 32 8 chr6 5629957 5630082 -176785160 + L1ME2 LINE L1 6023 6150 -14 * 1582 224 124 30 chr6 5630084 5630575 -176784667 + L1MC4 LINE L1 6354 6890 -1152 293 24 49 0 chr6 5630786 5630827 -176784415 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2150 88 0 0 chr6 5630832 5631094 -176784148 - AluY SINE Alu -30 281 20 2432 87 0 0 chr6 5631540 5631851 -176783391 + AluY SINE Alu 1 311 0 705 224 156 29 chr6 5631861 5632066 -176783176 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5632277 5632584 -176782658 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5632925 5632989 -176782253 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5633022 5633324 -176781918 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5633326 5633366 -176781876 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5633588 5633621 -176781621 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5634153 5634203 -176781039 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5635378 5635567 -176779675 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5636402 5636437 -176778805 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5636610 5636800 -176778442 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5637121 5637155 -176778087 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5637519 5637576 -176777666 + CT-rich Low_complexity Low_complexity 1 56 0 2608 155 29 31 chr6 5638193 5638710 -176776532 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5638710 5638793 -176776449 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1142 165 26 35 chr6 5638794 5639024 -176776218 - L1MA9 LINE L1 -524 5788 5561 * 3956 171 58 1 chr6 5639019 5639660 -176775582 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5639660 5639683 -176775559 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3956 171 58 1 chr6 5639683 5639818 -176775424 - L1MA9 LINE L1 -2471 3675 3549 371 285 7 35 chr6 5640109 5640253 -176774989 + MIR SINE MIR 67 206 -56 362 220 156 0 chr6 5640603 5640712 -176774530 - MER103 DNA DNA -38 128 3 400 247 227 0 chr6 5640769 5640919 -176774323 + MIR SINE MIR 18 201 -61 416 237 209 38 chr6 5642169 5642380 -176772862 + MIR SINE MIR 14 260 -2 501 298 44 24 chr6 5642904 5643152 -176772090 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5644842 5644870 -176770372 + AT_rich Low_complexity Low_complexity 1 28 0 2142 137 3 6 chr6 5645115 5645428 -176769814 + AluJb SINE Alu 1 312 0 1471 217 209 14 chr6 5647459 5648119 -176767123 - LTR50 LTR ERVL -1 794 6 273 240 91 25 chr6 5648791 5648912 -176766330 - MIR SINE MIR -74 188 60 249 298 64 0 chr6 5649030 5649124 -176766118 - MIR SINE MIR -46 216 117 1727 169 14 0 chr6 5651121 5651400 -176763842 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5651408 5651449 -176763793 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 631 118 55 31 chr6 5652608 5652735 -176762507 - L1MB8 LINE L1 -19 6159 6030 1341 198 71 39 chr6 5653877 5654215 -176761027 + MLT1A1 LTR MaLR 6 354 -11 2510 77 0 6 chr6 5654252 5654564 -176760678 + AluSp SINE Alu 1 310 -3 587 310 45 4 chr6 5654586 5654828 -176760414 + MIR SINE MIR 8 259 -3 2396 92 3 0 chr6 5655380 5655683 -176759559 + AluSc SINE Alu 1 304 -5 232 234 234 0 chr6 5655937 5656014 -176759228 - MIR SINE MIR -54 208 114 347 147 80 13 chr6 5656029 5656104 -176759138 - REP3 LTR ERV 0 562 483 1201 187 5 5 chr6 5656105 5656324 -176758918 - AluJb SINE Alu -9 303 85 2023 206 71 21 chr6 5656324 5656436 -176758806 - REP3 LTR ERV -70 492 387 2018 202 53 18 chr6 5656436 5656887 -176758355 - MLT1C LTR MaLR 0 467 1 2023 206 71 21 chr6 5656887 5657240 -176758002 - REP3 LTR ERV -175 387 4 617 264 16 21 chr6 5657374 5657567 -176757675 - LTR16A LTR ERVL -1 449 258 521 299 127 22 chr6 5658857 5659502 -176755740 + L1MEd LINE L1 860 1668 -822 922 264 69 27 chr6 5659571 5660019 -176755223 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5660092 5660121 -176755121 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5660294 5660343 -176754899 + (TG)n Simple_repeat Simple_repeat 2 50 0 257 272 41 54 chr6 5661006 5661153 -176754089 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5662429 5662597 -176752645 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5663319 5663349 -176751893 + AT_rich Low_complexity Low_complexity 1 30 0 1167 180 201 14 chr6 5663376 5663665 -176751577 - MER2 DNA MER2_type 0 344 2 434 349 92 34 chr6 5666694 5666986 -176748256 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5667142 5667226 -176748016 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5667234 5667410 -176747832 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5667410 5667711 -176747531 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5667711 5668037 -176747205 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5668043 5668309 -176746933 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5669023 5669072 -176746170 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5669245 5669308 -176745934 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5669453 5669694 -176745548 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5669685 5669749 -176745493 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5670145 5670175 -176745067 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5670448 5670909 -176744333 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5671002 5671195 -176744047 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5673084 5673311 -176741931 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5674128 5674403 -176740839 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5675432 5675635 -176739607 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5675648 5675849 -176739393 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5675999 5676184 -176739058 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5676417 5676438 -176738804 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5676444 5676749 -176738493 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5677828 5677851 -176737391 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5679782 5680028 -176735214 - Tigger3(Golem) DNA MER2_type -2 3027 2780 1130 207 10 0 chr6 5680025 5680228 -176735014 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5685407 5685578 -176729664 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5685579 5685675 -176729567 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5685683 5685893 -176729349 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5685946 5686027 -176729215 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5686146 5686275 -176728967 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5686276 5686579 -176728663 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5686779 5687263 -176727979 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5687314 5687622 -176727620 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5687992 5688157 -176727085 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5688157 5688201 -176727041 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5690463 5690552 -176724690 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5690635 5691002 -176724240 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5691295 5691603 -176723639 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5692086 5692151 -176723091 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5693152 5693178 -176722064 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5693534 5693982 -176721260 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5694296 5694609 -176720633 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5694962 5695074 -176720168 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5695108 5695164 -176720078 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5695165 5695221 -176720021 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5697219 5697525 -176717717 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5697616 5697665 -176717577 - Alu SINE Alu -244 57 8 276 270 51 29 chr6 5699346 5699483 -176715759 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5699587 5699929 -176715313 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5700276 5700350 -176714892 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5700872 5701075 -176714167 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5701620 5701691 -176713551 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5701769 5701806 -176713436 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5701829 5701960 -176713282 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5702585 5702807 -176712435 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5703268 5703292 -176711950 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5703539 5703789 -176711453 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5703877 5704006 -176711236 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5704006 5704488 -176710754 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5704691 5704904 -176710338 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5705123 5705410 -176709832 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5706427 5706513 -176708729 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5706734 5706827 -176708415 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5707752 5708186 -176707056 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5708385 5708828 -176706414 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5709563 5709861 -176705381 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5710054 5710141 -176705101 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5710835 5711015 -176704227 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5711015 5711290 -176703952 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5711290 5711343 -176703899 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5712195 5712267 -176702975 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5712400 5712480 -176702762 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5713143 5713188 -176702054 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5713374 5713682 -176701560 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5713809 5715026 -176700216 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5715753 5715980 -176699262 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5718006 5718103 -176697139 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5719639 5720235 -176695007 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5720250 5720546 -176694696 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5720688 5720777 -176694465 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5721592 5721684 -176693558 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5721699 5722008 -176693234 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5722009 5722137 -176693105 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5723410 5723511 -176691731 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5727206 5727242 -176688000 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5727848 5728012 -176687230 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5728099 5728143 -176687099 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5728212 5728252 -176686990 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5730795 5730853 -176684389 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5733623 5733716 -176681526 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5733822 5734307 -176680935 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5734444 5734536 -176680706 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5735644 5736402 -176678840 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5736616 5737067 -176678175 - L1PA8 LINE L1 0 6172 5721 293 222 28 42 chr6 5739091 5739163 -176676079 + L2 LINE L2 3193 3263 -9 44715 42 4 0 chr6 5739213 5745349 -176669893 - L1PA4 LINE L1 -1 6154 1 204 340 0 0 chr6 5745482 5745535 -176669707 - L2 LINE L2 -15 3257 3205 1398 253 172 13 chr6 5746579 5747111 -176668131 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5747539 5747563 -176667679 + AT_rich Low_complexity Low_complexity 1 24 0 1531 176 7 27 chr6 5747734 5748035 -176667207 + AluJo SINE Alu 1 295 -17 662 256 68 11 chr6 5748476 5748667 -176666575 - MIR SINE MIR 0 262 61 590 297 116 19 chr6 5748904 5749189 -176666053 + L1ME4a LINE L1 5315 5625 -599 386 288 72 68 chr6 5749551 5749801 -176665441 + L1ME4a LINE L1 5864 6114 -7 22 0 0 0 chr6 5750897 5750919 -176664323 + AT_rich Low_complexity Low_complexity 1 22 0 2091 141 128 16 chr6 5751136 5751519 -176663723 - MSTA LTR MaLR -2 426 1 378 250 98 8 chr6 5751742 5751874 -176663368 - MLT1I LTR MaLR 0 409 266 483 170 50 0 chr6 5752401 5752501 -176662741 + MER5A DNA MER1_type 9 113 -76 1624 88 0 5 chr6 5752523 5752739 -176662503 - AluSg/x SINE Alu -15 295 81 419 259 196 7 chr6 5752783 5752926 -176662316 - MER5B DNA MER1_type -3 175 6 1970 94 36 0 chr6 5753421 5753696 -176661546 - AluSg SINE Alu -14 296 12 1979 159 47 6 chr6 5757110 5757450 -176657792 - MLT1A1 LTR MaLR -1 364 11 428 193 34 0 chr6 5757887 5757975 -176657267 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5758021 5758045 -176657197 + AT_rich Low_complexity Low_complexity 1 24 0 2133 160 0 3 chr6 5759008 5759345 -176655897 - MER1B DNA MER1_type -1 336 1 216 290 110 100 chr6 5760834 5761134 -176654108 - L2 LINE L2 -79 3193 2891 1620 142 0 12 chr6 5761685 5761939 -176653303 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5762684 5762781 -176652461 + (TG)n Simple_repeat Simple_repeat 1 97 0 1508 293 75 11 chr6 5763385 5764000 -176651242 + L1MEc LINE L1 31 684 -5712 2831 169 136 120 chr6 5764001 5764300 -176650942 + L1MC3 LINE L1 6757 7049 -736 276 30 0 0 chr6 5764300 5764333 -176650909 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2831 169 136 120 chr6 5764333 5764368 -176650874 + L1MC3 LINE L1 7049 7082 -703 262 234 26 13 chr6 5764368 5764445 -176650797 + MLT1F1 LTR MaLR 33 110 -457 2831 169 136 120 chr6 5764445 5765045 -176650197 + L1MC3 LINE L1 7082 7785 0 24 0 0 0 chr6 5765117 5765141 -176650101 + AT_rich Low_complexity Low_complexity 1 24 0 248 382 71 12 chr6 5765521 5765691 -176649551 - MIR SINE MIR -56 206 27 22 0 0 0 chr6 5766981 5767003 -176648239 + AT_rich Low_complexity Low_complexity 1 22 0 2152 116 0 0 chr6 5767755 5768058 -176647184 + AluSx SINE Alu 1 303 -9 650 301 74 5 chr6 5768070 5768286 -176646956 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5768341 5769105 -176646137 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5769114 5769392 -176645850 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5769449 5770358 -176644884 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5770358 5770403 -176644839 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5770444 5770658 -176644584 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5770714 5770735 -176644507 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5770766 5770808 -176644434 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5770921 5770949 -176644293 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5770949 5771226 -176644016 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5771287 5771413 -176643829 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5772113 5772490 -176642752 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5773525 5773580 -176641662 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5773645 5773778 -176641464 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5773778 5774080 -176641162 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5774080 5775347 -176639895 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5775547 5775768 -176639474 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5776356 5776552 -176638690 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5777735 5777878 -176637364 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5777880 5778008 -176637234 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5778449 5778664 -176636578 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5778666 5778959 -176636283 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5780010 5780181 -176635061 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5782869 5783067 -176632175 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5783801 5784004 -176631238 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5784267 5784363 -176630879 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5785141 5785216 -176630026 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5785353 5785446 -176629796 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5785897 5785976 -176629266 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5786783 5787013 -176628229 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5787602 5787745 -176627497 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5787815 5787860 -176627382 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5788232 5788343 -176626899 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5789019 5789443 -176625799 - MLT1F LTR MaLR -102 440 1 2192 127 0 0 chr6 5790263 5790555 -176624687 + AluSg SINE Alu 1 292 -18 306 247 68 66 chr6 5790653 5790902 -176624340 + MLT1J LTR MaLR 126 364 -147 195 100 0 0 chr6 5790949 5790979 -176624263 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1799 164 11 7 chr6 5790981 5791262 -176623980 - AluJo SINE Alu -30 282 1 1071 176 53 13 chr6 5791984 5792211 -176623031 - L1MD2 LINE L1 -294 6065 5830 950 129 0 8 chr6 5792226 5792358 -176622884 + FLAM_C SINE Alu 1 131 -2 585 297 91 18 chr6 5792869 5793088 -176622154 - MIR SINE MIR -15 247 13 2387 99 0 3 chr6 5794651 5794964 -176620278 - AluSx SINE Alu 0 312 1 540 290 43 6 chr6 5797422 5797584 -176617658 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5797862 5797906 -176617336 + AT_rich Low_complexity Low_complexity 1 44 0 1909 159 0 3 chr6 5798558 5798848 -176616394 - AluJb SINE Alu -19 293 5 188 282 68 68 chr6 5799685 5799788 -176615454 + L2 LINE L2 3158 3260 -12 1392 237 90 62 chr6 5799938 5800518 -176614724 - L2 LINE L2 -221 3092 2482 462 283 7 7 chr6 5800521 5800659 -176614583 - MLT1F LTR MaLR -404 138 1 321 236 0 2 chr6 5801641 5801715 -176613527 - MIR SINE MIR -84 124 52 301 223 204 51 chr6 5802317 5802474 -176612768 - L2 LINE L2 -571 2743 2563 525 309 84 50 chr6 5802998 5803318 -176611924 - L2 LINE L2 -1 3271 2941 311 307 111 33 chr6 5805730 5805883 -176609359 - MIR3 SINE MIR -24 184 20 223 317 120 7 chr6 5805955 5806097 -176609145 + MIR SINE MIR 61 218 -44 282 292 62 23 chr6 5807094 5807300 -176607942 - MIR SINE MIR -1 261 2 649 312 113 34 chr6 5807545 5807895 -176607347 - L1MEc LINE L1 -753 1737 1303 1541 295 108 37 chr6 5807913 5808216 -176607026 - L1MEc LINE L1 -4873 1246 966 2337 66 33 0 chr6 5808216 5808518 -176606724 - L1PA7 LINE L1 -4 6150 5839 1541 295 108 37 chr6 5808518 5809012 -176606230 - L1MEc LINE L1 -5153 966 352 189 0 0 0 chr6 5809012 5809033 -176606209 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1541 295 108 37 chr6 5809033 5809296 -176605946 - L1MEc LINE L1 -5767 352 109 1860 133 154 16 chr6 5809330 5809699 -176605543 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5810658 5810732 -176604510 + MIR SINE MIR 16 87 -175 264 315 41 20 chr6 5811246 5811392 -176603850 + MARNA DNA Mariner 196 344 -242 318 356 19 0 chr6 5812065 5812169 -176603073 - MIR SINE MIR -109 153 48 517 307 21 107 chr6 5812175 5812550 -176602692 + L2 LINE L2 2930 3272 0 248 285 220 32 chr6 5812698 5812884 -176602358 + L3 LINE CR1 1259 1479 -98 180 235 78 0 chr6 5812867 5812918 -176602324 + MIR3 SINE MIR 151 205 -3 * 180 0 0 0 chr6 5814821 5814841 -176600401 + (A)n Simple_repeat Simple_repeat 1 20 0 316 122 0 0 chr6 5815039 5815088 -176600154 - L1MB4 LINE L1 -302 5878 5830 243 182 164 18 chr6 5815098 5815153 -176600089 - MIR SINE MIR -119 143 81 274 268 141 64 chr6 5815201 5815421 -176599821 - MIR SINE MIR 0 262 26 1602 159 0 23 chr6 5816233 5816490 -176598752 + AluJo SINE Alu 52 302 -10 538 292 58 6 chr6 5816513 5816684 -176598558 - MIR3 SINE MIR -8 200 21 715 276 43 17 chr6 5817088 5817320 -176597922 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5818800 5818899 -176596343 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5819671 5820077 -176595165 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5820077 5820368 -176594874 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5820368 5820582 -176594660 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5820582 5820790 -176594452 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5821619 5822301 -176592941 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5823404 5823443 -176591799 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5823444 5823610 -176591632 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5823931 5824096 -176591146 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5825760 5825948 -176589294 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5825948 5826364 -176588878 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5826364 5826504 -176588738 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5826585 5826676 -176588566 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5826796 5827012 -176588230 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5827357 5827506 -176587736 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5827519 5827683 -176587559 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5828632 5828698 -176586544 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5829373 5829407 -176585835 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5829547 5829663 -176585579 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5830402 5830951 -176584291 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5830949 5831086 -176584156 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5831086 5831111 -176584131 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5831142 5831193 -176584049 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5831193 5831327 -176583915 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5831328 5831445 -176583797 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5832256 5832398 -176582844 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5832475 5833638 -176581604 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5833638 5833773 -176581469 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5833773 5833855 -176581387 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5834181 5834303 -176580939 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5834440 5834902 -176580340 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5835655 5835726 -176579516 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5836340 5836395 -176578847 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5836562 5837284 -176577958 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5837484 5837617 -176577625 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5838350 5838426 -176576816 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5839016 5839078 -176576164 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5839080 5839165 -176576077 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5839166 5839700 -176575542 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5840717 5841060 -176574182 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5841060 5841168 -176574074 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5841217 5841315 -176573927 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5842112 5842161 -176573081 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5842578 5842763 -176572479 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5842763 5843240 -176572002 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5843240 5843364 -176571878 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5843685 5843941 -176571301 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5844072 5844256 -176570986 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5844256 5844562 -176570680 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5844562 5845647 -176569595 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5845645 5845693 -176569549 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5845696 5846116 -176569126 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5846675 5846953 -176568289 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5846953 5846982 -176568260 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5847195 5847910 -176567332 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5848029 5848238 -176567004 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5848247 5848318 -176566924 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5848319 5848673 -176566569 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5848673 5850248 -176564994 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5850248 5850599 -176564643 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5850620 5850782 -176564460 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5850874 5851277 -176563965 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5851504 5851736 -176563506 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5851736 5851778 -176563464 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5851779 5851971 -176563271 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5851992 5852358 -176562884 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5852367 5852894 -176562348 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5852896 5853130 -176562112 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5853207 5853276 -176561966 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5853279 5853420 -176561822 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5853565 5853869 -176561373 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5853929 5854091 -176561151 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5854566 5854622 -176560620 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5854622 5854844 -176560398 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5854900 5855151 -176560091 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5856746 5856772 -176558470 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5857946 5858149 -176557093 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5858168 5858215 -176557027 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5858215 5858593 -176556649 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5858593 5858922 -176556320 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5858922 5860535 -176554707 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5860542 5860913 -176554329 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5861085 5861184 -176554058 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5862035 5862130 -176553112 + CT-rich Low_complexity Low_complexity 1 97 0 786 75 0 0 chr6 5862330 5862436 -176552806 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 1044 216 73 85 chr6 5863320 5863699 -176551543 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5863699 5863724 -176551518 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5863724 5863755 -176551487 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5863922 5864129 -176551113 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5864376 5864902 -176550340 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5865248 5867403 -176547839 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5871468 5872157 -176543085 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5872184 5872357 -176542885 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5872506 5872569 -176542673 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5872586 5872629 -176542613 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5872629 5872776 -176542466 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5872776 5873066 -176542176 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5873066 5873211 -176542031 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5873636 5873918 -176541324 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5874242 5874345 -176540897 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5875384 5876270 -176538972 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5877884 5878177 -176537065 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5878346 5878379 -176536863 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5878393 5878425 -176536817 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5878425 5878714 -176536528 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5878714 5879023 -176536219 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5879023 5879106 -176536136 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5879106 5880007 -176535235 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5882166 5882293 -176532949 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5882469 5882620 -176532622 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5883233 5883396 -176531846 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5883405 5883490 -176531752 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5883493 5883535 -176531707 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5883607 5883842 -176531400 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5883867 5884007 -176531235 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5884007 5884301 -176530941 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5884301 5884323 -176530919 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5885149 5885457 -176529785 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5885457 5885624 -176529618 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5885706 5885830 -176529412 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5886107 5886197 -176529045 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5886285 5886402 -176528840 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5887899 5888880 -176526362 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5888893 5889712 -176525530 - SVA Other Other -555 831 1 403 268 36 7 chr6 5889719 5889857 -176525385 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5889982 5890244 -176524998 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5890264 5890298 -176524944 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5891081 5891146 -176524096 + MIR SINE MIR 82 147 -61 235 299 21 10 chr6 5891486 5891583 -176523659 - MIR SINE MIR -54 208 111 233 229 9 0 chr6 5892079 5892184 -176523058 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5892198 5892323 -176522919 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5892345 5892415 -176522827 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 438 289 64 6 chr6 5893370 5893526 -176521716 + MIR3 SINE MIR 37 201 -7 2824 236 43 24 chr6 5895071 5895876 -176519366 - L1ME3A LINE L1 -76 6094 5274 342 257 184 0 chr6 5896762 5896871 -176518371 - L2 LINE L2 -1 3271 3143 1417 266 51 58 chr6 5897646 5898252 -176516990 - MLT1L LTR MaLR 0 615 14 259 232 253 0 chr6 5898673 5898772 -176516470 + MIR SINE MIR 53 176 -86 257 137 196 0 chr6 5899081 5899132 -176516110 - MLT1J1 LTR MaLR -385 61 1 427 228 117 0 chr6 5899687 5899832 -176515410 + LTR16C LTR ERVL 330 491 0 561 286 30 0 chr6 5900562 5900730 -176514512 + LTR16A LTR ERVL 97 269 -181 349 273 111 0 chr6 5900778 5900877 -176514365 + LTR16A LTR ERVL 341 450 0 391 269 0 0 chr6 5901249 5901357 -176513885 + L2 LINE L2 2503 2610 -704 300 325 63 16 chr6 5901983 5902174 -176513068 + L2 LINE L2 3106 3305 -8 193 312 192 16 chr6 5902753 5902878 -176512364 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5902902 5902968 -176512274 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5904330 5904358 -176510884 + AT_rich Low_complexity Low_complexity 1 28 0 1067 261 92 11 chr6 5904860 5905205 -176510037 + MLT1J LTR MaLR 1 373 -138 2024 144 89 53 chr6 5905205 5905291 -176509951 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5905291 5905318 -176509924 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 144 89 53 chr6 5905318 5905623 -176509619 - MLT2D LTR ERVL -83 437 38 1930 163 12 65 chr6 5905623 5905733 -176509509 + MLT1B LTR MaLR 1 115 -275 1897 90 12 102 chr6 5905733 5906065 -176509177 + AluSx SINE Alu 1 302 -10 1930 163 12 65 chr6 5906065 5906366 -176508876 + MLT1B LTR MaLR 115 390 0 2024 144 89 53 chr6 5906366 5906406 -176508836 - MLT2D LTR ERVL -482 38 1 245 326 28 14 chr6 5907602 5907746 -176507496 + MIR SINE MIR 109 254 -8 446 297 50 41 chr6 5908648 5908867 -176506375 - MIR SINE MIR -26 236 16 5046 134 7 67 chr6 5909843 5910790 -176504452 - L1MB3 LINE L1 -9 6174 5284 198 277 62 0 chr6 5910836 5910901 -176504341 - MIR SINE MIR -117 145 77 7664 37 0 0 chr6 5910932 5912188 -176503054 - L1PA5 LINE L1 0 6154 4900 6987 167 36 10 chr6 5912435 5913055 -176502187 + L1MA9 LINE L1 4022 4624 -1688 2149 140 0 0 chr6 5913055 5913355 -176501887 + AluSx SINE Alu 1 300 -12 6987 167 36 10 chr6 5913355 5914898 -176500344 + L1MA9 LINE L1 4624 6312 0 1016 223 55 106 chr6 5914928 5915586 -176499656 + MLT1D LTR MaLR 17 505 0 490 198 9 0 chr6 5915758 5915864 -176499378 - MIR SINE MIR -85 177 71 424 185 12 12 chr6 5916408 5916489 -176498753 + L1MB1 LINE L1 5685 5765 -401 712 148 58 26 chr6 5916489 5916637 -176498605 + L1MB8 LINE L1 6018 6177 -1 1507 182 28 18 chr6 5917397 5917601 -176497641 + MER33 DNA MER1_type 1 201 -2384 2044 119 69 28 chr6 5917601 5917961 -176497281 + THE1C LTR MaLR 1 375 0 1507 182 28 18 chr6 5917961 5918087 -176497155 + MER33 DNA MER1_type 201 324 0 190 339 35 9 chr6 5918470 5918585 -176496657 - L2 LINE L2 -971 2343 2226 618 256 111 14 chr6 5918760 5918967 -176496275 + MLT1G LTR MaLR 61 287 -303 629 262 6 17 chr6 5919001 5919173 -176496069 + MLT1G LTR MaLR 421 590 0 619 319 58 25 chr6 5919660 5919936 -176495306 - L3 LINE CR1 -824 753 469 324 157 0 0 chr6 5920199 5920250 -176494992 + L1MB1 LINE L1 5817 5867 -301 4119 166 43 15 chr6 5920551 5921365 -176493877 + L1MA10 LINE L1 5487 6323 -11 1999 130 0 11 chr6 5921380 5921665 -176493577 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5921851 5921896 -176493346 + T-rich Low_complexity Low_complexity 6 49 0 388 276 184 6 chr6 5921970 5922144 -176493098 + MIR SINE MIR 29 233 -29 317 253 0 0 chr6 5923186 5923261 -176491981 - L1ME3A LINE L1 -311 5859 5785 451 239 26 9 chr6 5923275 5923388 -176491854 - L1MA10 LINE L1 -2 6332 6218 639 252 47 51 chr6 5923451 5923705 -176491537 - L1ME3A LINE L1 -393 5777 5525 772 286 118 18 chr6 5923718 5924176 -176491066 - L1ME3A LINE L1 -1692 4454 3951 720 304 101 7 chr6 5924642 5925080 -176490162 - L3 LINE CR1 -2 1575 1097 1855 168 61 82 chr6 5927012 5927306 -176487936 - MLT1C LTR MaLR 0 467 183 2077 120 0 49 chr6 5927306 5927632 -176487610 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5927632 5927778 -176487464 - MLT1C LTR MaLR -284 183 36 224 279 58 0 chr6 5927951 5928037 -176487205 + L3b LINE CR1 1239 1329 -254 279 0 0 0 chr6 5928556 5928587 -176486655 + (CA)n Simple_repeat Simple_repeat 2 32 0 565 329 48 17 chr6 5928883 5929236 -176486006 - LTR16C LTR ERVL 0 491 128 675 100 0 0 chr6 5929489 5929579 -176485663 + FLAM_A SINE Alu 10 99 -43 1025 347 62 24 chr6 5929870 5930545 -176484697 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5930561 5930587 -176484655 + AT_rich Low_complexity Low_complexity 1 26 0 2245 303 66 40 chr6 5930593 5932790 -176482452 - ERVL LTR ERVL -1536 4228 1902 684 354 97 8 chr6 5933082 5933455 -176481787 - ERVL LTR ERVL -3531 1465 1060 2413 94 0 0 chr6 5934189 5934496 -176480746 + AluY SINE Alu 1 307 -4 248 234 73 40 chr6 5934755 5934879 -176480363 + L1ME LINE L1 40 167 -5903 322 234 0 13 chr6 5935117 5935194 -176480048 + L2 LINE L2 3229 3304 -9 370 227 62 31 chr6 5935448 5935576 -176479666 + MIR SINE MIR 65 196 -66 227 242 65 0 chr6 5935578 5935640 -176479602 - L2 LINE L2 -1 3312 3247 265 195 230 44 chr6 5935644 5935757 -176479485 - L2 LINE L2 0 3313 3180 1361 171 23 5 chr6 5935807 5936220 -176479022 + MLT2B2 LTR ERVL 1 515 0 570 292 50 7 chr6 5937861 5938138 -176477104 - L1ME4a LINE L1 -1 6120 5832 969 287 96 39 chr6 5938166 5938973 -176476269 + L2 LINE L2 2461 3313 0 375 244 131 40 chr6 5938988 5939164 -176476078 - L1ME4a LINE L1 -334 5787 5596 34041 31 18 10 chr6 5939172 5944939 -176470303 - L1PA2 LINE L1 -2 6153 322 1476 18 0 0 chr6 5944939 5945104 -176470138 - AluYb8 SINE Alu 0 318 154 34041 31 18 10 chr6 5945104 5945426 -176469816 - L1PA2 LINE L1 -5833 322 4 607 284 89 4 chr6 5946039 5946275 -176468967 - MIR SINE MIR -3 259 4 1915 212 129 39 chr6 5946289 5946808 -176468434 - MLT1G LTR MaLR -6 584 19 502 131 0 24 chr6 5946809 5946893 -176468349 - L1MC1 LINE L1 0 6333 6252 2260 94 17 7 chr6 5946921 5947220 -176468022 - AluSc SINE Alu 0 309 8 547 318 31 41 chr6 5948407 5948725 -176466517 + MLT1I LTR MaLR 82 396 -13 1055 261 5 0 chr6 5948725 5948943 -176466299 + MER58A DNA MER1_type 4 222 -2 189 0 0 0 chr6 5949761 5949782 -176465460 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5950415 5950476 -176464766 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5950475 5950499 -176464743 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 429 191 57 77 chr6 5950772 5950955 -176464287 + MER58 DNA MER1_type 43 2419 -1 2058 269 77 70 chr6 5950977 5953131 -176462111 - HERV16 LTR ERVL -2762 2234 1 1336 253 93 23 chr6 5953138 5953534 -176461708 - LTR16A LTR ERVL -10 440 17 253 236 112 22 chr6 5953644 5953733 -176461509 - L1ME4a LINE L1 -17 6104 6008 289 131 51 35 chr6 5954127 5954206 -176461036 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5954216 5954295 -176460947 + (CA)n Simple_repeat Simple_repeat 1 81 0 2154 128 56 11 chr6 5954295 5954653 -176460589 + L1PB4 LINE L1 5783 6156 0 741 251 25 5 chr6 5954740 5954939 -176460303 - L1ME4a LINE L1 -393 5728 5526 2153 118 0 10 chr6 5956155 5956452 -176458790 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5956543 5956569 -176458673 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5956665 5956714 -176458528 + (GA)n Simple_repeat Simple_repeat 2 50 0 589 298 164 3 chr6 5957021 5957350 -176457892 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5957397 5957418 -176457824 + (TG)n Simple_repeat Simple_repeat 2 22 0 1230 202 68 46 chr6 5958726 5959214 -176456028 - MLT1F LTR MaLR 0 567 20 282 184 79 26 chr6 5959424 5959500 -176455742 + LTR50 LTR ERVL 716 795 0 301 298 0 11 chr6 5959576 5959670 -176455572 - MIR SINE MIR -121 141 49 2762 155 33 26 chr6 5960123 5960614 -176454628 + L1PA15 LINE L1 5670 6163 -2 303 348 123 40 chr6 5961050 5961277 -176453965 - MIR SINE MIR -1 261 16 362 300 0 0 chr6 5961728 5961828 -176453414 + MER5A DNA MER1_type 67 166 -23 499 266 65 18 chr6 5961904 5962073 -176453169 + MIR SINE MIR 47 223 -39 21 36 0 0 chr6 5962453 5962481 -176452761 + AT_rich Low_complexity Low_complexity 1 28 0 1049 288 50 52 chr6 5962977 5963394 -176451848 - L2 LINE L2 -66 3247 2832 2284 185 17 77 chr6 5963394 5963928 -176451314 - MLT1D LTR MaLR -1 504 3 1049 288 50 52 chr6 5963928 5964307 -176450935 - L2 LINE L2 -481 2832 2454 245 214 54 0 chr6 5964524 5964580 -176450662 - LTR50 LTR ERVL 0 795 737 319 231 100 23 chr6 5964580 5964710 -176450532 - L1MEc LINE L1 -4544 1852 1713 843 49 0 0 chr6 5964734 5964836 -176450406 - L1PA7 LINE L1 -3 6151 6050 340 261 22 0 chr6 5964838 5964930 -176450312 - L2 LINE L2 -644 2670 2577 33001 108 8 58 chr6 5964962 5971324 -176443918 - L1PA7 LINE L1 -108 6046 12 1041 255 50 61 chr6 5971335 5971557 -176443685 - L1MEc LINE L1 -4678 1718 1495 1639 174 44 7 chr6 5971557 5971855 -176443387 - 7SLRNA srpRNA srpRNA -9 311 3 1041 255 50 61 chr6 5971855 5972174 -176443068 - L1MEc LINE L1 -4901 1495 1183 351 220 28 37 chr6 5972189 5972298 -176442944 + LTR16B LTR ERVL 355 462 -2 1124 304 27 38 chr6 5972332 5972888 -176442354 - L1MEc LINE L1 -5637 759 210 1015 175 0 16 chr6 5973037 5973231 -176442011 + L1MB7 LINE L1 4976 5166 -980 2117 173 41 12 chr6 5973231 5973647 -176441595 + L1MB3 LINE L1 5749 6176 -7 4077 202 45 12 chr6 5973668 5974664 -176440578 + L1MB7 LINE L1 5149 6173 -11 256 222 127 16 chr6 5974703 5974766 -176440476 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5974856 5974877 -176440365 + AT_rich Low_complexity Low_complexity 1 21 0 514 285 80 10 chr6 5975052 5975252 -176439990 + MIR SINE MIR 48 261 -1 320 26 0 0 chr6 5975914 5975953 -176439289 + U5 snRNA snRNA 6 44 -72 184 298 0 0 chr6 5976626 5976673 -176438569 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5976677 5976771 -176438471 + (CCA)n Simple_repeat Simple_repeat 1 94 0 381 340 29 40 chr6 5977014 5977377 -176437865 + L3 LINE CR1 430 866 -711 2469 167 55 4 chr6 5977460 5977916 -176437326 + L1MD1 LINE L1 5565 6043 -199 1512 213 66 26 chr6 5977916 5978263 -176436979 - MSTD LTR MaLR 0 396 36 1030 163 41 5 chr6 5978270 5978461 -176436781 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5978461 5978483 -176436759 + (CA)n Simple_repeat Simple_repeat 1 22 0 760 339 42 0 chr6 5978505 5978791 -176436451 + L3 LINE CR1 976 1273 -304 2042 162 34 3 chr6 5979265 5979617 -176435625 - MLT1A1 LTR MaLR 0 365 3 1758 189 0 3 chr6 5980452 5980944 -176434298 - AluJo SINE Alu 0 312 1 502 289 0 7 chr6 5981241 5981376 -176433866 - MER94 DNA DNA 0 134 1 198 231 70 124 chr6 5981864 5982050 -176433192 + L2 LINE L2 3015 3190 -82 184 274 20 0 chr6 5982599 5982650 -176432592 - L2 LINE L2 -5 3267 3216 1323 234 80 27 chr6 5982787 5983291 -176431951 + MLT1E LTR MaLR 102 593 0 703 257 50 94 chr6 5983339 5983701 -176431541 + LTR16A LTR ERVL 105 450 0 201 310 0 14 chr6 5983901 5983972 -176431270 - MIR3 SINE MIR -27 181 112 288 299 0 0 chr6 5984419 5984506 -176430736 - MIR SINE MIR -26 236 150 1903 188 39 39 chr6 5985378 5985793 -176429449 - MLT1D LTR MaLR 0 505 91 862 242 100 64 chr6 5986592 5986952 -176428290 - MLT1J2 LTR MaLR 0 450 78 315 231 34 60 chr6 5988214 5988331 -176426911 + MIR SINE MIR 49 162 -100 797 311 59 11 chr6 5988744 5989200 -176426042 + L2 LINE L2 2034 2511 -803 237 275 165 0 chr6 5989636 5989745 -176425497 + HsTC2 DNA Tc2 1 127 -1771 2754 208 59 0 chr6 5989761 5990352 -176424890 + HsTC2 DNA Tc2 1273 1898 0 181 289 132 18 chr6 5990484 5990598 -176424644 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5992061 5992196 -176423046 + AT_rich Low_complexity Low_complexity 1 135 0 438 272 43 19 chr6 5992218 5992380 -176422862 - MIR3 SINE MIR -9 199 34 351 278 75 100 chr6 5992523 5992610 -176422632 - Charlie8 DNA MER1_type -106 235 147 1754 160 3 39 chr6 5992610 5992916 -176422326 - AluJb SINE Alu 0 312 18 351 278 75 100 chr6 5992916 5993069 -176422173 - Charlie8 DNA MER1_type -194 147 1 2089 109 0 7 chr6 5993087 5993433 -176421809 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5994160 5994392 -176420850 - Charlie8 DNA MER1_type -2177 240 2 318 311 20 27 chr6 5995698 5995846 -176419396 + L2 LINE L2 2343 2489 -825 436 214 127 8 chr6 5995963 5996089 -176419153 - MER103 DNA DNA -7 159 19 210 358 45 11 chr6 5996244 5996423 -176418819 + L2 LINE L2 2601 2785 -529 992 238 135 67 chr6 5996560 5997086 -176418156 + L1MEc LINE L1 1297 1858 -4538 9342 109 8 0 chr6 5997179 5998454 -176416788 - HSMAR1 DNA Mariner 0 1287 3 1731 100 4 21 chr6 5999537 5999778 -176415464 + AluSc SINE Alu 63 299 -10 2300 136 87 0 chr6 6001733 6002124 -176413118 - MSTB1 LTR MaLR 0 432 8 436 344 60 5 chr6 6003666 6003881 -176411361 - Charlie8 DNA MER1_type -2136 281 55 181 320 181 41 chr6 6005212 6005677 -176409565 + L2 LINE L2 2446 2975 -339 284 279 52 19 chr6 6007091 6007245 -176407997 + L1MC4a LINE L1 5768 5926 -1882 264 298 25 19 chr6 6007424 6007582 -176407660 + L1MC4a LINE L1 5768 5926 -1882 2225 116 0 0 chr6 6009449 6009752 -176405490 + AluY SINE Alu 1 303 -8 1199 157 101 28 chr6 6010549 6010797 -176404445 + L1MD3 LINE L1 7730 7995 0 690 110 20 0 chr6 6011854 6011954 -176403288 + AluSg/x SINE Alu 204 305 -5 252 314 137 10 chr6 6012535 6012637 -176402605 + MIR SINE MIR 30 144 -64 255 283 43 0 chr6 6014182 6014274 -176400968 - MIR SINE MIR -13 249 154 442 60 60 0 chr6 6014275 6014342 -176400900 - AluSp/q SINE Alu -12 301 231 258 59 0 0 chr6 6014344 6014378 -176400864 - Alu SINE Alu -268 34 1 273 352 110 0 chr6 6014380 6014525 -176400717 - MIR SINE MIR -100 162 2 386 282 86 56 chr6 6015715 6016052 -176399190 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 6017736 6017775 -176397467 + (TA)n Simple_repeat Simple_repeat 1 39 0 204 208 21 0 chr6 6017878 6017926 -176397316 - L2 LINE L2 0 3313 3265 2389 85 0 16 chr6 6018292 6018608 -176396634 - AluY SINE Alu 0 311 1 282 229 16 41 chr6 6019232 6019360 -176395882 - MIR SINE MIR -18 190 67 2149 115 3 3 chr6 6019361 6019647 -176395595 + AluSx SINE Alu 1 286 -26 326 116 261 0 chr6 6019668 6019737 -176395505 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 6020297 6020327 -176394915 + AT_rich Low_complexity Low_complexity 1 30 0 390 216 0 0 chr6 6020696 6020780 -176394462 + MIR SINE MIR 61 145 -63 1354 13 0 7 chr6 6021320 6021475 -176393767 + L1PA6 LINE L1 5995 6148 -6 714 189 24 18 chr6 6021594 6021763 -176393479 + MER5B DNA MER1_type 7 176 -2 359 312 35 24 chr6 6022313 6022483 -176392759 - MIR SINE MIR -70 192 21 1242 203 39 123 chr6 6022807 6023294 -176391948 + L1MC5 LINE L1 6692 7122 -839 2347 85 3 10 chr6 6023294 6023599 -176391643 + AluSp SINE Alu 1 303 -10 1242 203 39 123 chr6 6023599 6023707 -176391535 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 6023854 6023927 -176391315 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 6024179 6024204 -176391038 + AT_rich Low_complexity Low_complexity 1 25 0 457 301 96 0 chr6 6024505 6024734 -176390508 + L2 LINE L2 1452 1702 -1612 667 184 14 35 chr6 6024743 6024884 -176390358 + L1PA16 LINE L1 6027 6164 -2 483 218 29 24 chr6 6025162 6025332 -176389910 + L1 LINE L1 3128 3298 -2848 750 228 13 70 chr6 6027643 6027867 -176387375 + L1 LINE L1 3289 3493 -2653 869 165 0 0 chr6 6027867 6028000 -176387242 + FLAM_A SINE Alu 1 133 0 750 228 13 70 chr6 6028000 6028073 -176387169 + L1 LINE L1 3493 3569 -2577 2844 128 5 25 chr6 6028298 6028370 -176386872 + MER83 LTR ERV1 1 73 -375 2195 100 0 77 chr6 6028370 6028709 -176386533 + AluSq SINE Alu 1 313 0 2844 128 5 25 chr6 6028709 6029075 -176386167 + MER83 LTR ERV1 73 430 -18 274 378 94 55 chr6 6029128 6029403 -176385839 + L2 LINE L2 2985 3270 -2 2123 95 0 7 chr6 6030217 6030544 -176384698 + AluSc SINE Alu 1 325 0 1769 242 122 33 chr6 6030625 6031161 -176384081 - MLT1E2 LTR MaLR 0 626 34 2280 102 10 0 chr6 6031161 6031456 -176383786 + AluSg SINE Alu 1 298 -12 1769 242 122 33 chr6 6031456 6031494 -176383748 - MLT1E2 LTR MaLR -592 34 1 397 228 0 22 chr6 6033113 6033205 -176382037 + FLAM_A SINE Alu 44 133 0 291 242 63 90 chr6 6033353 6033576 -176381666 - HAL1 LINE L1 -1153 1354 1138 1319 175 10 31 chr6 6033609 6033916 -176381326 + MLT1A1 LTR MaLR 1 373 -1 287 303 49 25 chr6 6033920 6034042 -176381200 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 6034131 6034159 -176381083 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 6034301 6034427 -176380815 + L1MC4 LINE L1 7599 7724 -318 317 203 0 0 chr6 6035262 6035321 -176379921 - L2 LINE L2 0 3313 3255 1906 158 10 0 chr6 6035527 6035818 -176379424 + AluJo SINE Alu 1 294 -18 1137 194 19 0 chr6 6035911 6036122 -176379120 - MER20 DNA MER1_type -4 215 1 1999 134 7 3 chr6 6036677 6036967 -176378275 + AluSp SINE Alu 1 291 -22 307 281 71 52 chr6 6037265 6037475 -176377767 - L2 LINE L2 -228 3085 2872 508 278 139 4 chr6 6039292 6039522 -176375720 + MIR SINE MIR 2 262 0 493 231 62 36 chr6 6039792 6039990 -176375252 + LTR33A LTR ERVL 26 175 -348 1798 161 3 16 chr6 6040274 6040585 -176374657 + AluJo SINE Alu 1 307 -5 2568 219 15 9 chr6 6040679 6041214 -176374028 - MLT1F LTR MaLR -2 540 3 283 346 43 68 chr6 6041788 6042227 -176373015 - L2 LINE L2 -38 3234 2807 224 254 0 48 chr6 6042667 6042730 -176372512 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 6042951 6042983 -176372259 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 6044426 6044450 -176370792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 6044657 6045164 -176370078 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 6045261 6045476 -176369766 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 6046169 6046425 -176368817 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 6047153 6047322 -176367920 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 6050246 6050268 -176364974 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 6051072 6051102 -176364140 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 6051674 6051706 -176363536 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 6052685 6052865 -176362377 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 6053551 6053586 -176361656 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 6053735 6053761 -176361481 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 6055768 6055889 -176359353 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 6056075 6056111 -176359131 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 6056600 6056621 -176358621 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 6059893 6059970 -176355272 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 6060579 6060611 -176354631 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 6060613 6060693 -176354549 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 6060988 6061057 -176354185 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 6062289 6062314 -176352928 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 6062812 6062881 -176352361 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 6063743 6064035 -176351207 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 6064272 6064682 -176350560 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 6064693 6064911 -176350331 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 6064949 6064991 -176350251 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 6065069 6065948 -176349294 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 6066227 6066704 -176348538 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 6066704 6067008 -176348234 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 6067008 6067562 -176347680 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 6067564 6067849 -176347393 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 6067849 6068008 -176347234 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 6068008 6068132 -176347110 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 6068162 6068665 -176346577 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 6068665 6068710 -176346532 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 6068710 6069832 -176345410 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 6070044 6070508 -176344734 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 6070508 6070871 -176344371 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 6070871 6070966 -176344276 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 6070966 6071046 -176344196 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 6071046 6072065 -176343177 - L1MC3 LINE L1 -542 7243 6087 1458 162 38 22 chr6 6072189 6072503 -176342739 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 6073329 6073368 -176341874 + (TG)n Simple_repeat Simple_repeat 2 40 0 343 268 33 72 chr6 6073768 6073921 -176341321 + MIR SINE MIR 34 180 -82 2129 173 36 51 chr6 6074826 6075300 -176339942 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 6075906 6075966 -176339276 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 6075968 6076151 -176339091 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 6076156 6076236 -176339006 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1103 182 82 82 chr6 6076238 6076518 -176338724 - AluJo SINE Alu -32 280 1 1800 164 0 0 chr6 6076544 6076837 -176338405 - AluJb SINE Alu -19 293 1 208 305 0 49 chr6 6076876 6076958 -176338284 + MIR3 SINE MIR 125 202 -6 217 194 21 161 chr6 6077144 6077237 -176338005 + MIR3 SINE MIR 122 201 -7 266 326 62 16 chr6 6077354 6077483 -176337759 - L2 LINE L2 -27 3245 3111 2048 168 89 39 chr6 6077573 6078013 -176337229 - MLT1C LTR MaLR 0 467 6 183 291 35 35 chr6 6078674 6078760 -176336482 - L2 LINE L2 -733 2581 2496 638 224 26 13 chr6 6078969 6079125 -176336117 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 6080585 6080614 -176334628 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2826 77 66 16 chr6 6080822 6081249 -176333993 - LTR7 LTR ERV1 -2 448 1 2675 66 45 13 chr6 6081249 6081629 -176333613 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 6081627 6081844 -176333398 - HERVH LTR ERV1 -1894 5819 5600 * 4236 153 12 1 chr6 6081845 6082500 -176332742 - HERVH LTR ERV1 -2564 5149 4488 3497 105 10 2 chr6 6082498 6083002 -176332240 - HERVH LTR ERV1 -3714 3999 3492 * 890 143 27 0 chr6 6082992 6083139 -176332103 - HERVH LTR ERV1 -4423 3290 3140 * 17118 101 36 25 chr6 6083109 6086197 -176329045 - HERVH LTR ERV1 -4709 3004 1 2740 89 60 17 chr6 6086199 6086613 -176328629 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 6087715 6087832 -176327410 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 6088942 6089109 -176326133 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3461 67 2 7 chr6 6089111 6089561 -176325681 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 6089562 6089594 -176325648 + (CAT)n Simple_repeat Simple_repeat 3 34 0 629 316 59 30 chr6 6089712 6090016 -176325226 + L3 LINE CR1 1251 1563 -14 1230 146 68 5 chr6 6090094 6090300 -176324942 + MER20 DNA MER1_type 1 219 0 12220 34 0 0 chr6 6090517 6092719 -176322523 - L1PA4 LINE L1 0 6155 3951 566 246 8 0 chr6 6092969 6093099 -176322143 - MER94 DNA DNA 0 134 4 444 279 147 35 chr6 6094297 6094536 -176320706 + MIR SINE MIR 2 255 -7 278 359 92 0 chr6 6094579 6094721 -176320521 + L2 LINE L2 3117 3271 -1 562 176 27 148 chr6 6094924 6095180 -176320062 + LTR16A1 LTR ERVL 1 225 -232 266 295 21 53 chr6 6096004 6096099 -176319143 - MIR3 SINE MIR -17 191 100 583 120 25 96 chr6 6098719 6099623 -176315619 + (TA)n Simple_repeat Simple_repeat 1 840 0 277 301 14 0 chr6 6099646 6099789 -176315453 + (TA)n Simple_repeat Simple_repeat 1 145 0 641 323 155 17 chr6 6099913 6100616 -176314626 - L2 LINE L2 -474 2840 2041 254 301 88 18 chr6 6100618 6100731 -176314511 + L2 LINE L2 3192 3312 -1 189 325 39 13 chr6 6100784 6100861 -176314381 - L2 LINE L2 -1376 1938 1860 2296 84 0 7 chr6 6101259 6101546 -176313696 - AluY SINE Alu -26 285 1 456 263 36 22 chr6 6101710 6101934 -176313308 - L1MC4a LINE L1 -1785 6023 5797 245 315 63 23 chr6 6101985 6102287 -176312955 - L1MC4a LINE L1 -1099 5047 4734 317 280 106 34 chr6 6102308 6102544 -176312698 - L1MC4a LINE L1 -1438 4708 4456 216 0 0 0 chr6 6102544 6102568 -176312674 + (T)n Simple_repeat Simple_repeat 1 24 0 869 251 81 36 chr6 6102725 6103259 -176311983 - L1MC5 LINE L1 -50 7911 7354 233 266 55 37 chr6 6103322 6103431 -176311811 - HAL1b LINE L1 -742 606 496 21 0 0 0 chr6 6103778 6103799 -176311443 + AT_rich Low_complexity Low_complexity 1 21 0 329 269 0 0 chr6 6106768 6106835 -176308407 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6106838 6106922 -176308320 + AluS SINE Alu 1 84 -228 182 208 21 0 chr6 6108528 6108576 -176306666 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6109177 6109359 -176305883 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6112008 6112077 -176303165 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6112157 6112262 -176302980 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6112634 6112896 -176302346 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6112896 6112932 -176302310 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6113010 6113560 -176301682 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6113560 6113861 -176301381 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6113861 6114205 -176301037 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6114370 6114424 -176300818 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6114424 6114724 -176300518 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6114724 6115676 -176299566 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6115822 6115915 -176299327 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6115959 6116233 -176299009 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6116265 6116289 -176298953 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6116653 6117098 -176298144 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6117889 6117974 -176297268 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6117974 6120449 -176294793 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6120450 6121117 -176294125 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6121117 6121607 -176293635 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6121643 6121959 -176293283 - AluYa5 SINE Alu 0 311 1 21435 125 13 17 chr6 6121959 6122488 -176292754 - L1P LINE L1 -2530 3616 3087 2290 113 0 6 chr6 6122488 6122799 -176292443 - AluY SINE Alu -2 309 1 21435 125 13 17 chr6 6122799 6125888 -176289354 - L1P LINE L1 -3059 3087 11 279 54 0 0 chr6 6126070 6126107 -176289135 + (TCC)n Simple_repeat Simple_repeat 1 37 0 1516 169 66 0 chr6 6126107 6126380 -176288862 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6126817 6126970 -176288272 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6127015 6127545 -176287697 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6127548 6127719 -176287523 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6127815 6127960 -176287282 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6127961 6128340 -176286902 + L1MEc LINE L1 2167 2499 -3716 930 294 73 38 chr6 6128370 6129678 -176285564 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6129694 6132338 -176282904 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6132341 6132374 -176282868 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6132536 6132781 -176282461 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6133126 6133213 -176282029 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6133239 6133459 -176281783 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6133535 6133561 -176281681 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6133708 6134288 -176280954 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6134301 6134688 -176280554 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6135677 6136079 -176279163 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6136878 6137246 -176277996 + MLT1A2 LTR MaLR 1 370 -4 2750 125 28 0 chr6 6138225 6138656 -176276586 + L1PB3 LINE L1 5711 6153 -1 614 233 126 6 chr6 6138788 6138947 -176276295 - MER5A DNA MER1_type 0 189 12 218 261 72 43 chr6 6139017 6139086 -176276156 - L2 LINE L2 0 3272 3202 209 182 45 154 chr6 6140068 6140178 -176275064 - L2 LINE L2 -20 3252 3155 2035 179 16 40 chr6 6140180 6140604 -176274638 + MLT2D LTR ERVL 1 414 0 200 189 0 0 chr6 6141504 6141541 -176273701 + (TG)n Simple_repeat Simple_repeat 2 38 0 202 346 0 0 chr6 6141643 6141695 -176273547 + L2 LINE L2 3215 3266 -6 225 0 0 0 chr6 6141795 6141820 -176273422 + (CA)n Simple_repeat Simple_repeat 2 26 0 246 136 0 0 chr6 6141894 6141938 -176273304 + (GA)n Simple_repeat Simple_repeat 1 44 0 672 195 94 25 chr6 6141996 6142155 -176273087 - MER5B DNA MER1_type -4 174 5 774 159 6 38 chr6 6142157 6142339 -176272903 + MER33 DNA MER1_type 1 166 -100 1357 212 104 51 chr6 6142340 6142793 -176272449 + MLT1D LTR MaLR 1 477 -28 460 191 17 9 chr6 6142792 6142907 -176272335 + MER33 DNA MER1_type 209 324 0 * 4221 179 38 5 chr6 6143519 6144316 -176270926 + MER54A LTR ERVL 75 897 -4 1197 282 153 7 chr6 6145868 6146473 -176268769 + L2 LINE L2 2612 3307 -6 1449 185 46 60 chr6 6147258 6147712 -176267530 - L1ME2 LINE L1 -114 6050 5603 334 130 0 29 chr6 6147712 6147781 -176267461 + (TA)n Simple_repeat Simple_repeat 2 68 0 1243 68 0 0 chr6 6147790 6147952 -176267290 + AluY SINE Alu 150 311 0 253 250 0 0 chr6 6148075 6148159 -176267083 + L1MC4 LINE L1 6620 6703 -1339 4580 243 51 35 chr6 6148200 6149218 -176266024 - L1ME2 LINE L1 -1083 5063 4063 2353 84 3 0 chr6 6149218 6149527 -176265715 - AluY SINE Alu -1 310 1 4580 243 51 35 chr6 6149527 6149664 -176265578 - L1ME2 LINE L1 -2083 4063 3930 2140 111 3 0 chr6 6149664 6149962 -176265280 - AluSp SINE Alu -14 299 1 4580 243 51 35 chr6 6149962 6150658 -176264584 - L1ME2 LINE L1 -2216 3930 3181 5517 139 14 24 chr6 6150685 6152229 -176263013 - L1PA13 LINE L1 0 7601 6065 2046 133 3 0 chr6 6152229 6152522 -176262720 + AluSx SINE Alu 1 294 -18 5517 139 14 24 chr6 6152522 6152650 -176262592 - L1PA13 LINE L1 -1536 6065 5937 12880 199 17 11 chr6 6152666 6152677 -176262565 - L1PA13 LINE L1 -1668 5916 5907 306 0 0 0 chr6 6152677 6152711 -176262531 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6152711 6155063 -176260179 - L1PA4 LINE L1 -18 6137 3784 12880 199 17 11 chr6 6155063 6157349 -176257893 - L1PA13 LINE L1 -1677 5907 3582 2119 139 0 0 chr6 6157349 6157650 -176257592 - AluSx SINE Alu -11 301 1 12880 199 17 11 chr6 6157650 6158807 -176256435 - L1PA13 LINE L1 -4002 3582 2434 1126 198 0 25 chr6 6158888 6159125 -176256117 - L1PA13 LINE L1 -7350 231 1 6040 145 31 0 chr6 6159243 6160638 -176254604 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6160637 6165421 -176249821 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6165421 6165443 -176249799 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6165443 6165523 -176249719 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6165566 6165622 -176249620 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6165627 6166312 -176248930 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6166312 6166622 -176248620 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6166622 6166841 -176248401 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6166889 6167188 -176248054 - L1MEc LINE L1 -4356 2040 1721 22572 108 11 10 chr6 6167221 6171710 -176243532 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6172037 6172065 -176243177 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6172156 6172458 -176242784 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6172539 6172944 -176242298 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6172965 6173437 -176241805 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6173442 6173806 -176241436 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6173909 6173998 -176241244 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6173998 6174344 -176240898 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6174393 6174455 -176240787 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6174457 6174516 -176240726 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6174516 6176201 -176239041 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6176203 6177722 -176237520 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6177722 6178027 -176237215 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6178026 6178314 -176236928 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6178427 6178901 -176236341 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6178904 6179844 -176235398 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6180453 6181543 -176233699 - MER69 DNA AcHobo -1316 1210 4 6012 119 28 10 chr6 6182432 6183655 -176231587 - L1MA3 LINE L1 0 6305 5062 736 194 8 0 chr6 6183744 6183873 -176231369 - FLAM_A SINE Alu -3 130 1 289 319 44 55 chr6 6185741 6185923 -176229319 - L3 LINE CR1 -5 1572 1393 1557 269 75 24 chr6 6187271 6187821 -176227421 + MLT1E LTR MaLR 16 593 0 2127 139 0 0 chr6 6187835 6188136 -176227106 - AluSx SINE Alu -11 301 1 839 193 36 107 chr6 6188162 6188499 -176226743 - L1ME3A LINE L1 -101 6069 5757 588 214 53 0 chr6 6188503 6188634 -176226608 - L1ME3A LINE L1 -507 5663 5526 221 301 0 14 chr6 6190475 6190548 -176224694 + L3 LINE CR1 1142 1213 -364 1826 250 43 19 chr6 6190737 6190795 -176224447 - MLT1H1 LTR MaLR -1 554 499 941 149 85 11 chr6 6190795 6190983 -176224259 + L1MA4A LINE L1 6102 6303 0 1826 250 43 19 chr6 6190983 6191464 -176223778 - MLT1H1 LTR MaLR -56 499 2 218 293 0 32 chr6 6192870 6192993 -176222249 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6193405 6193480 -176221762 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 241 278 41 0 chr6 6193838 6193935 -176221307 - L1MC4 LINE L1 0 8042 7942 14434 28 2 0 chr6 6193945 6196608 -176218634 - L1PA3 LINE L1 -2 6153 3486 336 220 264 0 chr6 6196616 6196707 -176218535 + MER117 DNA MER1_type 41 155 -42 384 258 47 57 chr6 6199636 6199797 -176215445 - MIR3 SINE MIR -66 142 15 3324 83 32 17 chr6 6199856 6200323 -176214919 + L1PB1 LINE L1 5678 6151 0 2862 156 4 28 chr6 6201866 6202373 -176212869 + L1MA6 LINE L1 5801 6295 -5 1860 208 11 19 chr6 6202397 6202772 -176212470 + MLT1A2 LTR MaLR 1 372 -2 743 298 146 22 chr6 6203801 6204170 -176211072 + L3 LINE CR1 1072 1486 -91 203 286 0 0 chr6 6204386 6204428 -176210814 + L2 LINE L2 3255 3296 -17 648 295 16 21 chr6 6204453 6204643 -176210599 + MIR SINE MIR 3 191 -71 301 303 50 0 chr6 6205599 6205698 -176209544 + MIR SINE MIR 41 144 -118 600 102 11 0 chr6 6206355 6206443 -176208799 + L1MA5 LINE L1 6206 6294 -6 244 386 16 16 chr6 6206922 6207049 -176208193 - MIR3 SINE MIR -44 164 38 1095 216 9 5 chr6 6207403 6207621 -176207621 - MER20 DNA MER1_type 0 219 1 280 253 62 88 chr6 6209708 6209902 -176205340 + MER3 DNA MER1_type 21 209 0 * 1066 183 0 11 chr6 6209902 6209937 -176205305 - MER3 DNA MER1_type -164 45 13 808 220 30 0 chr6 6209938 6210106 -176205136 - MIR SINE MIR -68 194 22 441 274 61 76 chr6 6210151 6210414 -176204828 - MIR SINE MIR -3 259 1 242 214 214 0 chr6 6211281 6211379 -176203863 + MIR3 SINE MIR 12 130 -78 2499 75 0 0 chr6 6211906 6212211 -176203031 - AluY SINE Alu -4 307 3 325 306 76 38 chr6 6212507 6212664 -176202578 - MER91A DNA MER1_type -30 166 4 2401 98 0 0 chr6 6213007 6213314 -176201928 + AluSx SINE Alu 1 307 -5 320 117 0 50 chr6 6213330 6213416 -176201826 - Alu SINE Alu 0 301 234 494 198 48 32 chr6 6213516 6213642 -176201600 + Tigger3(Golem) DNA MER2_type 2840 2967 -62 920 198 25 13 chr6 6214011 6214249 -176200993 + Charlie5 DNA MER1_type 2341 2581 -31 2203 103 13 3 chr6 6214509 6214810 -176200432 - AluSg SINE Alu -6 304 1 234 0 0 0 chr6 6215066 6215092 -176200150 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 239 0 0 31 chr6 6215182 6215214 -176200028 + (TG)n Simple_repeat Simple_repeat 2 32 0 2363 147 56 19 chr6 6215214 6215628 -176199614 - MSTB1 LTR MaLR -3 429 1 329 267 82 52 chr6 6217639 6217871 -176197371 + L1MEd LINE L1 2 240 -5879 1870 238 51 11 chr6 6217906 6218564 -176196678 - L1MB5 LINE L1 0 6174 5254 319 308 197 0 chr6 6219432 6219549 -176195693 + MER91C DNA MER1_type 1 140 0 21 57 0 0 chr6 6219775 6219810 -176195432 + AT_rich Low_complexity Low_complexity 1 35 0 2592 155 77 37 chr6 6219840 6220457 -176194785 - MER4B LTR ERV1 0 779 1 711 191 23 8 chr6 6220504 6220635 -176194607 - MER41C LTR ERV1 -421 133 1 375 278 39 13 chr6 6220875 6221045 -176194197 + L1ME LINE L1 34 207 -5863 294 206 8 135 chr6 6221078 6221204 -176194038 + L1MEc LINE L1 20 129 -6267 1600 303 45 5 chr6 6221264 6221826 -176193416 + L1MEc LINE L1 136 719 -5677 1422 179 64 87 chr6 6222079 6222770 -176192472 + LTR49-int LTR ERV1 1546 2251 -4012 2361 100 0 6 chr6 6222770 6223081 -176192161 + AluSg1 SINE Alu 1 309 0 1422 179 64 87 chr6 6223081 6223121 -176192121 + LTR49-int LTR ERV1 2251 3835 -2428 572 179 90 94 chr6 6223379 6223602 -176191640 + LTR49-int LTR ERV1 3511 3732 -2866 2505 211 80 50 chr6 6223692 6225122 -176190120 + LTR49-int LTR ERV1 2472 5093 -1137 27429 50 5 4 chr6 6225341 6228769 -176186473 + L1P LINE L1 905 4334 -1812 3037 9 3 11 chr6 6228779 6229127 -176186115 - L1HS LINE L1 0 6155 5811 20794 36 2 0 chr6 6229227 6231723 -176183519 + L1P LINE L1 1639 4137 -2009 21 0 0 0 chr6 6231841 6231862 -176183380 + GC_rich Low_complexity Low_complexity 1 21 0 22920 36 1 1 chr6 6231882 6235308 -176179934 + L1PA4 LINE L1 2729 6155 0 327 177 0 0 chr6 6235954 6236016 -176179226 + Alu SINE Alu 240 301 0 208 235 0 0 chr6 6236489 6236540 -176178702 + MIR SINE MIR 211 261 -1 2275 64 30 3 chr6 6236659 6236955 -176178287 - AluY SINE Alu -7 304 1 2235 56 0 0 chr6 6236957 6237227 -176178015 - AluY SINE Alu -8 303 34 915 137 0 0 chr6 6237446 6237570 -176177672 - AluSq/x SINE Alu -189 124 1 270 0 0 0 chr6 6238458 6238488 -176176754 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr6 6238487 6238515 -176176727 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 509 346 21 5 chr6 6239642 6239830 -176175412 - MIR SINE MIR -67 195 5 357 340 74 28 chr6 6239762 6239977 -176175265 + MIR SINE MIR 17 241 -21 * 4948 105 42 16 chr6 6240266 6241009 -176174233 - L1PA13 LINE L1 -6 6157 5396 665 84 176 8 chr6 6241009 6241128 -176174114 + L1PA13 LINE L1 5254 5392 -776 2247 95 0 3 chr6 6241135 6241430 -176173812 + L1PA14 LINE L1 5858 6151 -10 189 0 0 0 chr6 6241442 6241463 -176173779 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6241623 6241800 -176173442 + CT-rich Low_complexity Low_complexity 5 178 0 799 256 39 17 chr6 6243014 6243248 -176171994 + MIR SINE MIR 15 253 -9 835 221 17 43 chr6 6243758 6243989 -176171253 + L1ME3 LINE L1 5937 6161 -1 189 0 0 0 chr6 6244261 6244282 -176170960 + (T)n Simple_repeat Simple_repeat 1 21 0 183 184 0 0 chr6 6244298 6244336 -176170906 + (CA)n Simple_repeat Simple_repeat 1 38 0 683 195 53 35 chr6 6245968 6246137 -176169105 + MER5B DNA MER1_type 6 177 -1 411 263 219 0 chr6 6246234 6246371 -176168871 + MER5A DNA MER1_type 16 182 -7 362 237 13 0 chr6 6246437 6246520 -176168722 - MER81 DNA DNA -30 84 1 1190 167 28 19 chr6 6246524 6246740 -176168502 + MER20 DNA MER1_type 2 219 0 231 267 23 23 chr6 6248206 6248292 -176166950 + MIR SINE MIR 55 140 -68 1351 263 173 6 chr6 6248363 6249086 -176166156 + L2 LINE L2 2461 3312 -1 299 229 64 9 chr6 6249083 6249192 -176166050 - MIR SINE MIR -85 177 63 * 2269 105 0 3 chr6 6249387 6249683 -176165559 - AluSx SINE Alu -17 295 1 2282 91 0 0 chr6 6250338 6250624 -176164618 - AluSx SINE Alu -5 307 22 448 197 0 0 chr6 6250840 6250943 -176164299 - MER5A DNA MER1_type -83 106 4 2320 117 0 0 chr6 6251045 6251353 -176163889 + AluSx SINE Alu 1 308 -4 182 312 56 32 chr6 6251926 6252051 -176163191 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6252528 6252646 -176162596 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6253227 6253343 -176161899 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6254348 6254442 -176160800 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6255207 6255259 -176159983 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6255666 6256085 -176159157 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6257066 6257269 -176157973 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6258044 6258156 -176157086 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6259411 6259828 -176155414 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6260149 6260293 -176154949 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6260411 6260459 -176154783 - MER5B DNA MER1_type -19 159 113 298 335 96 20 chr6 6261029 6261226 -176154016 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6261886 6261972 -176153270 + MER5B DNA MER1_type 2 88 -90 180 219 49 0 chr6 6262025 6262066 -176153176 + MIR SINE MIR 72 114 -148 43627 36 22 6 chr6 6262067 6268189 -176147053 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6268781 6269460 -176145782 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6269735 6269774 -176145468 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6271743 6271920 -176143322 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6274335 6274628 -176140614 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6275491 6275643 -176139599 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6275651 6275732 -176139510 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6276041 6276145 -176139097 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6276145 6276448 -176138794 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6276448 6276556 -176138686 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6277222 6277505 -176137737 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6278641 6278665 -176136577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6278668 6278767 -176136475 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6278881 6279142 -176136100 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6279310 6279403 -176135839 + L2 LINE L2 3175 3268 -4 1263 221 43 24 chr6 6280150 6280721 -176134521 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6280886 6280911 -176134331 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6282714 6282773 -176132469 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6283568 6283797 -176131445 - MER20B DNA MER1_type 0 783 548 6134 223 57 39 chr6 6283891 6285578 -176129664 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6285746 6286879 -176128363 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6286880 6287165 -176128077 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6287260 6287283 -176127959 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6287283 6287347 -176127895 - Alu SINE Alu -15 294 230 270 191 63 0 chr6 6287450 6287513 -176127729 + AluJ/FRAM SINE Alu 232 298 -4 225 155 0 184 chr6 6287525 6287596 -176127646 + L1MB7 LINE L1 6095 6177 -7 216 0 0 0 chr6 6287596 6287620 -176127622 + (TA)n Simple_repeat Simple_repeat 2 25 0 1835 84 0 145 chr6 6287620 6287965 -176127277 - AluY SINE Alu -6 295 1 225 155 0 184 chr6 6287965 6287995 -176127247 + L1MB7 LINE L1 6175 6178 -6 2101 131 0 16 chr6 6287996 6288302 -176126940 - AluSx SINE Alu -11 301 1 352 272 243 6 chr6 6288320 6288489 -176126753 + MIR SINE MIR 20 228 -34 43787 33 22 1 chr6 6288936 6294962 -176120280 + L1PA3 LINE L1 1 6154 -1 21 0 0 0 chr6 6294962 6294983 -176120259 + AT_rich Low_complexity Low_complexity 1 21 0 185 368 18 35 chr6 6295218 6295332 -176119910 - L2 LINE L2 -20 3252 3141 235 276 17 0 chr6 6296555 6296613 -176118629 + C-rich Low_complexity Low_complexity 4 62 0 592 294 10 30 chr6 6296699 6296896 -176118346 - MIR SINE MIR -49 213 21 462 238 119 7 chr6 6297234 6297377 -176117865 - MIR SINE MIR -96 166 8 345 75 0 0 chr6 6297812 6297865 -176117377 + (TG)n Simple_repeat Simple_repeat 2 54 0 486 215 189 5 chr6 6298749 6298937 -176116305 + MIR SINE MIR 39 256 -6 21 57 0 0 chr6 6301513 6301548 -176113694 + AT_rich Low_complexity Low_complexity 1 35 0 1834 177 26 10 chr6 6302769 6303074 -176112168 - AluJo SINE Alu -2 310 1 478 257 193 0 chr6 6303551 6303691 -176111551 + MER5A DNA MER1_type 21 187 -2 2073 124 10 0 chr6 6305736 6306026 -176109216 + AluSx SINE Alu 13 305 -7 180 152 0 0 chr6 6306480 6306513 -176108729 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6306670 6306694 -176108548 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6306779 6306845 -176108397 + HAL1b LINE L1 110 179 -1169 10875 194 75 3 chr6 6306859 6311576 -176103666 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6311619 6312151 -176103091 + HAL1b LINE L1 547 1127 -221 2908 230 29 27 chr6 6312197 6313585 -176101657 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6314765 6315124 -176100118 + L2 LINE L2 2911 3272 0 2657 227 80 53 chr6 6315228 6315987 -176099255 + L1ME2 LINE L1 4633 5370 -794 189 0 0 0 chr6 6315987 6316008 -176099234 + (TA)n Simple_repeat Simple_repeat 1 21 0 2657 227 80 53 chr6 6316008 6316752 -176098490 + L1ME2 LINE L1 5370 6164 0 204 318 34 23 chr6 6317025 6317113 -176098129 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6317789 6317882 -176097360 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6320195 6320344 -176094898 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6320362 6320611 -176094631 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6320888 6320994 -176094248 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6321989 6322092 -176093150 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6322209 6322259 -176092983 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6322271 6322439 -176092803 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6322512 6322787 -176092455 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6324917 6325000 -176090242 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6329001 6329076 -176086166 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6329206 6329905 -176085337 + L1MC5 LINE L1 7276 7907 -54 235 269 34 63 chr6 6329941 6330116 -176085126 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6330140 6330427 -176084815 + AluSx SINE Alu 1 303 -9 274 248 186 9 chr6 6330533 6330646 -176084596 + MLT1H LTR MaLR 43 175 -374 232 198 78 103 chr6 6330866 6330982 -176084260 + MLT1H LTR MaLR 437 549 0 642 274 94 34 chr6 6331282 6331778 -176083464 + L1MC4a LINE L1 5367 5447 -704 724 206 96 48 chr6 6332525 6332734 -176082508 - MIR SINE MIR -24 238 20 273 260 0 14 chr6 6332753 6332826 -176082416 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6333077 6333111 -176082131 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6335270 6335301 -176079941 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 182 294 69 29 chr6 6335436 6335538 -176079704 + MIR SINE MIR 37 142 -66 195 286 0 18 chr6 6335585 6335641 -176079601 - L2 LINE L2 -5 3267 3213 213 292 0 0 chr6 6336292 6336340 -176078902 + L2 LINE L2 3177 3224 -48 2343 110 0 0 chr6 6338220 6338530 -176076712 - AluSg SINE Alu 0 310 1 477 163 122 0 chr6 6338564 6338662 -176076580 - FLAM_A SINE Alu -13 129 20 701 181 84 0 chr6 6338711 6338866 -176076376 + MER5A DNA MER1_type 1 168 -21 190 125 31 0 chr6 6338840 6338872 -176076370 - MER5B DNA MER1_type -131 47 15 * 330 299 104 44 chr6 6339846 6340164 -176075078 + L2 LINE L2 1274 1610 -1704 * 791 210 30 0 chr6 6340159 6340326 -176074916 + MER5B DNA MER1_type 7 178 0 1362 290 181 29 chr6 6340326 6341251 -176073991 + L2 LINE L2 1609 2673 -641 452 290 246 6 chr6 6341707 6342028 -176073214 + L2 LINE L2 2040 2437 -877 880 158 0 0 chr6 6342242 6342375 -176072867 + AluJo SINE Alu 2 134 -178 365 100 17 0 chr6 6343203 6343263 -176071979 + MADE1 DNA Mariner 3 63 -17 1467 166 93 18 chr6 6343495 6343773 -176071469 - AluJo SINE Alu -13 299 1 540 238 71 8 chr6 6345391 6345517 -176069725 - L2 LINE L2 -1 3312 3179 567 270 54 32 chr6 6345539 6345724 -176069518 - MIR SINE MIR -64 198 10 253 362 21 11 chr6 6345750 6345844 -176069398 + MIR SINE MIR 36 130 -78 2133 126 0 7 chr6 6345949 6346251 -176068991 - AluSq SINE Alu -12 301 2 257 297 126 18 chr6 6346423 6346534 -176068708 + MIR SINE MIR 61 183 -79 604 239 35 78 chr6 6346913 6346960 -176068282 + MER58A DNA MER1_type 5 53 -2367 2254 79 4 0 chr6 6346960 6347273 -176067969 - AluY SINE Alu 0 314 1 604 239 35 78 chr6 6347273 6347454 -176067788 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6347845 6347972 -176067270 - MIR SINE MIR -67 141 18 3536 143 5 0 chr6 6349857 6350410 -176064832 + MER41D LTR ERV1 2 557 0 387 295 38 0 chr6 6351398 6351503 -176063739 + L2 LINE L2 3200 3308 -5 360 257 121 51 chr6 6352281 6352538 -176062704 - L2 LINE L2 -553 2761 2487 286 219 19 86 chr6 6352561 6352612 -176062630 - L2 LINE L2 -1 3312 3268 2000 128 4 0 chr6 6352612 6352929 -176062313 - AluSx SINE Alu 0 318 1 286 219 19 86 chr6 6352929 6352980 -176062262 - L2 LINE L2 -45 3268 3215 602 240 116 25 chr6 6353389 6353798 -176061444 + LTR33A LTR ERVL 9 498 -25 501 274 8 0 chr6 6353817 6353941 -176061301 - MIR SINE MIR -113 149 25 191 155 121 17 chr6 6353937 6353995 -176061247 + MIR SINE MIR 84 147 -115 * 1026 139 19 48 chr6 6354169 6354378 -176060864 + MER49 LTR ERV1 5 207 -716 2208 4 0 4 chr6 6354383 6354656 -176060586 + AluYa5 SINE Alu 70 341 0 2337 101 0 3 chr6 6355190 6355496 -176059746 + AluSq SINE Alu 9 313 0 343 310 49 27 chr6 6355559 6355791 -176059451 + L1ME LINE L1 5424 5659 -462 261 342 0 0 chr6 6355868 6355944 -176059298 + MIR3 SINE MIR 112 187 -21 213 39 0 0 chr6 6356900 6356926 -176058316 + (TTA)n Simple_repeat Simple_repeat 2 27 0 941 235 42 89 chr6 6357132 6357801 -176057441 + L1ME LINE L1 522 1155 -4925 2073 127 50 14 chr6 6358211 6358573 -176056669 - THE1C LTR MaLR 0 375 1 301 313 70 35 chr6 6359080 6359278 -176055964 + MIR SINE MIR 42 251 -11 1991 135 3 10 chr6 6360251 6360554 -176054688 + AluSx SINE Alu 1 301 -11 246 250 29 29 chr6 6360614 6360718 -176054524 - MLT1L LTR MaLR -36 579 476 337 261 48 106 chr6 6361106 6361154 -176054088 - MIR3 SINE MIR -10 198 149 1963 128 3 23 chr6 6361154 6361459 -176053783 + AluSq SINE Alu 1 299 -14 337 261 48 106 chr6 6361459 6361598 -176053644 - MIR3 SINE MIR -59 149 22 2162 102 0 3 chr6 6362580 6362875 -176052367 - AluSx SINE Alu -18 294 1 21 36 0 0 chr6 6363836 6363864 -176051378 + AT_rich Low_complexity Low_complexity 1 28 0 1166 277 78 23 chr6 6364812 6365289 -176049953 - MLT1J LTR MaLR -2 509 7 2675 164 42 17 chr6 6366587 6367130 -176048112 + MER89 LTR ERV1 3 559 0 350 293 25 51 chr6 6367474 6367631 -176047611 + MER5A DNA MER1_type 1 153 -36 25 0 0 0 chr6 6367963 6367988 -176047254 + AT_rich Low_complexity Low_complexity 1 25 0 207 269 46 65 chr6 6369536 6369644 -176045598 + L2 LINE L2 3198 3303 -10 279 376 48 0 chr6 6369895 6370020 -176045222 + MIR SINE MIR 16 146 -62 599 245 74 106 chr6 6370589 6371153 -176044089 - MLT1G1 LTR MaLR 0 595 6 284 250 0 11 chr6 6371276 6371364 -176043878 + L1MC4 LINE L1 6614 6700 -1342 2091 60 26 0 chr6 6372547 6372812 -176042430 + AluY SINE Alu 1 272 -39 508 256 141 0 chr6 6373130 6373286 -176041956 - MIR SINE MIR -10 252 75 219 69 0 0 chr6 6373347 6373376 -176041866 + (CA)n Simple_repeat Simple_repeat 2 30 0 515 284 0 16 chr6 6374074 6374257 -176040985 + (CA)n Simple_repeat Simple_repeat 1 180 0 822 154 51 0 chr6 6374265 6374421 -176040821 + L1MB2 LINE L1 6005 6168 -3 1656 227 30 59 chr6 6375795 6376372 -176038870 + MER68 LTR ERV1 3 562 0 1801 180 26 10 chr6 6378019 6378324 -176036918 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6378801 6378941 -176036301 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6380986 6381275 -176033967 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6381729 6381762 -176033480 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6381919 6381943 -176033299 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6382028 6382094 -176033148 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6382108 6386827 -176028415 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6386870 6387402 -176027840 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6387448 6388836 -176026406 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6390016 6390375 -176024867 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6390479 6392000 -176023242 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6392272 6392360 -176022882 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6393036 6393129 -176022113 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6395453 6395602 -176019640 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6395620 6395869 -176019373 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6396146 6396252 -176018990 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6397247 6397350 -176017892 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6397467 6397517 -176017725 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6397529 6397697 -176017545 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6397770 6398045 -176017197 - AluSp SINE Alu -26 287 1 235 301 12 48 chr6 6400175 6400258 -176014984 + MIR3 SINE MIR 6 85 -123 379 173 0 27 chr6 6404259 6404334 -176010908 + L1MC5 LINE L1 7135 7207 -754 706 217 63 146 chr6 6404464 6405189 -176010053 + L1MC5 LINE L1 7276 7940 -21 299 269 57 57 chr6 6405181 6405374 -176009868 + L1MC4a LINE L1 4467 4659 -1487 * 2022 118 56 0 chr6 6405398 6405685 -176009557 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6405791 6405904 -176009338 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6406124 6406240 -176009002 + MLT1H LTR MaLR 437 549 0 238 278 9 37 chr6 6406338 6406446 -176008796 + L1MC4a LINE L1 4878 4982 -1164 827 265 83 54 chr6 6406530 6407036 -176008206 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6407783 6407992 -176007250 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6408011 6408084 -176007158 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6408335 6408369 -176006873 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6410528 6410559 -176004683 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6410843 6410899 -176004343 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6411550 6411598 -176003644 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6413478 6413788 -176001454 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6413853 6413993 -176001249 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6413995 6414122 -176001120 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6414099 6414131 -176001111 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6415105 6415423 -175999819 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6415418 6415585 -175999657 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6415585 6416510 -175998732 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6416966 6417287 -175997955 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6417501 6417634 -175997608 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6418462 6418522 -175996720 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6418754 6419033 -175996209 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6420651 6420777 -175994465 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6420799 6420984 -175994258 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6421010 6421104 -175994138 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6421209 6421511 -175993731 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6421683 6421794 -175993448 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6422173 6422220 -175993022 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6422220 6422533 -175992709 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6422533 6422714 -175992528 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6423105 6423232 -175992010 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6425117 6425670 -175989572 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6426658 6426763 -175988479 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6427541 6427825 -175987417 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6427822 6427873 -175987369 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6427873 6428190 -175987052 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6428190 6428241 -175987001 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6428650 6429059 -175986183 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6429078 6429202 -175986040 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6429198 6429256 -175985986 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6429430 6429644 -175985598 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6429644 6429887 -175985355 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6429887 6430604 -175984638 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6430642 6431033 -175984209 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6431274 6431448 -175983794 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6434082 6434157 -175981085 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6434233 6434538 -175980704 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6434652 6434972 -175980270 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6434987 6435098 -175980144 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6435115 6435530 -175979712 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6435533 6436060 -175979182 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6437551 6437782 -175977460 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6438154 6438637 -175976605 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6438637 6438924 -175976318 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6438924 6439137 -175976105 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6440562 6441504 -175973738 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6441953 6441984 -175973258 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6442991 6443147 -175972095 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6443791 6444471 -175970771 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6444548 6444693 -175970549 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6444801 6445051 -175970191 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6446232 6446354 -175968888 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6446586 6446638 -175968604 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6446657 6447034 -175968208 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6447034 6447105 -175968137 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6447105 6447159 -175968083 + MLT2A1 LTR ERVL 400 453 0 36623 33 18 1 chr6 6447265 6453290 -175961952 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6454349 6454590 -175960652 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6454819 6455369 -175959873 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6455431 6455683 -175959559 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6455850 6455917 -175959325 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6455917 6456199 -175959043 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6456199 6456928 -175958314 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6456996 6457101 -175958141 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6457101 6457402 -175957840 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6457402 6457446 -175957796 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6458851 6459034 -175956208 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6459519 6459691 -175955551 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6460175 6460550 -175954692 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6460550 6460844 -175954398 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6460844 6461125 -175954117 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6461125 6461405 -175953837 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6461405 6461728 -175953514 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6461834 6462318 -175952924 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6462689 6462841 -175952401 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6462889 6462999 -175952243 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6463025 6463055 -175952187 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6463068 6463281 -175951961 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6464105 6464177 -175951065 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6464190 6464349 -175950893 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6464438 6464579 -175950663 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6464911 6465217 -175950025 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6465802 6465822 -175949420 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6466508 6466801 -175948441 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6466967 6467343 -175947899 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6468600 6468665 -175946577 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6468802 6468823 -175946419 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6469245 6469473 -175945769 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6470725 6470890 -175944352 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6471682 6471936 -175943306 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6472125 6472343 -175942899 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6473351 6473420 -175941822 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6473887 6473901 -175941341 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6473901 6474189 -175941053 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6474189 6474394 -175940848 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6474568 6474803 -175940439 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6474817 6475199 -175940043 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6475206 6475374 -175939868 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6476464 6476615 -175938627 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6476714 6476850 -175938392 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6476877 6477452 -175937790 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6478827 6478983 -175936259 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6478991 6479174 -175936068 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6479872 6479905 -175935337 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6479966 6480122 -175935120 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6480439 6480705 -175934537 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6481875 6481976 -175933266 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6482099 6482663 -175932579 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6483232 6483358 -175931884 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6483608 6483716 -175931526 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6485264 6485292 -175929950 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6485624 6485781 -175929461 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6486125 6486668 -175928574 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6487965 6488442 -175926800 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6489390 6489418 -175925824 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6490377 6490671 -175924571 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6491653 6491792 -175923450 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6491792 6492099 -175923143 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6492099 6492147 -175923095 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6492272 6492661 -175922581 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6492699 6493003 -175922239 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6494007 6494170 -175921072 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6494677 6495039 -175920203 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6495453 6496118 -175919124 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6496324 6496350 -175918892 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6497306 6497382 -175917860 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6497456 6497754 -175917488 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6497754 6498060 -175917182 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6498060 6498163 -175917079 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6498594 6498935 -175916307 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6500069 6500489 -175914753 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6501794 6502273 -175912969 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6502279 6502420 -175912822 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6503603 6503911 -175911331 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6504525 6504794 -175910448 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6505054 6505358 -175909884 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6505385 6505518 -175909724 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6505741 6505788 -175909454 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6506347 6506375 -175908867 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6506457 6506557 -175908685 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6506569 6506834 -175908408 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6507261 6507300 -175907942 + (TG)n Simple_repeat Simple_repeat 2 40 0 253 170 94 0 chr6 6507898 6507951 -175907291 + MER53 DNA DNA 1 58 -131 572 189 134 0 chr6 6507989 6508116 -175907126 + MER53 DNA DNA 46 189 0 288 331 45 22 chr6 6508989 6509167 -175906075 + MIR SINE MIR 31 212 -50 3171 138 16 6 chr6 6511097 6511603 -175903639 - L1MC3 LINE L1 0 7785 7275 219 259 152 45 chr6 6512075 6512187 -175903055 - MIR SINE MIR -14 248 125 816 303 137 16 chr6 6512696 6513201 -175902041 + L1MC4a LINE L1 5264 5829 -1979 258 330 78 26 chr6 6515602 6515717 -175899525 - L2 LINE L2 -8 3264 3144 1751 73 8 24 chr6 6515940 6516186 -175899056 + MER75B DNA T2_type 1 242 -1 377 177 13 0 chr6 6516409 6516488 -175898754 + (TA)n Simple_repeat Simple_repeat 2 81 0 2098 301 93 31 chr6 6516499 6517683 -175897559 - L2 LINE L2 -167 3146 1896 305 250 0 24 chr6 6517684 6517740 -175897502 + MER94 DNA DNA 4 57 -77 1655 208 33 43 chr6 6517740 6518220 -175897022 - MLT1F LTR MaLR 0 542 5 306 243 14 14 chr6 6518229 6518303 -175896939 + MER94 DNA DNA 61 134 0 280 182 0 0 chr6 6518546 6518590 -175896652 + MLT1K LTR MaLR 434 477 -111 1157 159 67 24 chr6 6520497 6520705 -175894537 - MER20 DNA MER1_type 0 219 3 428 264 50 0 chr6 6520773 6520894 -175894348 - MIR3 SINE MIR -44 164 38 257 59 0 0 chr6 6521020 6521054 -175894188 + MADE1 DNA Mariner 47 80 0 353 143 0 29 chr6 6521107 6521177 -175894065 - MADE1 DNA Mariner -12 68 1 813 73 0 0 chr6 6521681 6521790 -175893452 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6521794 6521830 -175893412 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6522253 6522284 -175892958 + AT_rich Low_complexity Low_complexity 1 31 0 266 355 41 86 chr6 6522642 6522910 -175892332 - L2 LINE L2 -92 3180 2925 204 321 0 0 chr6 6523198 6523251 -175891991 - MER5A DNA MER1_type 0 189 137 2742 175 50 2 chr6 6523251 6523747 -175891495 + L1MB3 LINE L1 5662 6181 -2 15382 196 15 5 chr6 6523824 6528272 -175886970 + L1P5 LINE L1 1818 6373 -494 1184 239 68 23 chr6 6528691 6529085 -175886157 - L1ME3A LINE L1 -10 6160 5749 617 264 43 40 chr6 6529085 6529104 -175886138 - L2 LINE L2 -311 3002 2985 2314 92 3 10 chr6 6529104 6529410 -175885832 + AluSq SINE Alu 1 304 -9 617 264 43 40 chr6 6529410 6529650 -175885592 - L2 LINE L2 -328 2985 2744 1746 113 55 24 chr6 6529750 6530041 -175885201 - THE1C LTR MaLR -75 300 1 1810 150 32 0 chr6 6530073 6530353 -175884889 - AluJb SINE Alu -23 289 1 2007 128 3 0 chr6 6530546 6530835 -175884407 - AluSc SINE Alu -19 290 1 1233 311 12 50 chr6 6531803 6532285 -175882957 - L2 LINE L2 0 3272 2809 1054 155 22 43 chr6 6532339 6532571 -175882671 - AluJo SINE Alu 0 312 86 307 242 62 0 chr6 6532622 6532750 -175882492 + AluSp SINE Alu 15 150 -153 949 101 0 0 chr6 6532881 6533000 -175882242 - AluSq/x SINE Alu -193 119 1 632 210 8 0 chr6 6533007 6533131 -175882111 - FLAM_C SINE Alu -10 133 9 2240 105 0 7 chr6 6533146 6533451 -175881791 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6533461 6533524 -175881718 + (ATG)n Simple_repeat Simple_repeat 3 65 0 228 242 48 48 chr6 6534112 6534174 -175881068 + L2 LINE L2 3025 3086 -186 2147 110 3 3 chr6 6534536 6534836 -175880406 + AluSx SINE Alu 2 301 -11 202 312 81 11 chr6 6534910 6535096 -175880146 + L2 LINE L2 2545 2743 -571 1637 119 12 0 chr6 6535097 6535341 -175879901 + L1PA16 LINE L1 5792 6038 -128 1316 92 6 6 chr6 6535341 6535515 -175879727 + AluSq SINE Alu 1 174 -139 384 243 29 10 chr6 6585619 6585722 -175829520 + MIR SINE MIR 109 213 -49 240 59 0 0 chr6 6586099 6586133 -175829109 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 249 371 46 7 chr6 6586595 6586746 -175828496 + L3 LINE CR1 631 787 -790 2363 162 22 20 chr6 6586833 6586925 -175828317 - L1M3 LINE L1 -677 5491 5401 2144 113 0 7 chr6 6586925 6587225 -175828017 - AluSx SINE Alu -14 298 1 2363 162 22 20 chr6 6587225 6587724 -175827518 - L1M3 LINE L1 -767 5401 4898 2023 139 0 0 chr6 6588522 6588810 -175826432 - AluSx SINE Alu -24 288 1 1661 273 65 27 chr6 6589052 6589579 -175825663 - MLT1H LTR MaLR 0 549 3 1082 299 25 0 chr6 6589582 6589903 -175825339 - LTR16C LTR ERVL -9 482 154 804 261 55 35 chr6 6590012 6590411 -175824831 - L2 LINE L2 -1366 1948 1542 397 296 148 23 chr6 6590423 6590680 -175824562 + L2 LINE L2 3023 3311 -2 367 252 58 0 chr6 6590942 6591045 -175824197 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6592213 6592326 -175822916 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6592595 6592636 -175822606 + (TTC)n Simple_repeat Simple_repeat 2 42 0 444 284 90 15 chr6 6593205 6593406 -175821836 - L2 LINE L2 -842 2472 2257 1016 142 0 44 chr6 6593406 6593589 -175821653 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6593873 6593994 -175821248 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6594057 6594126 -175821116 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6594149 6594448 -175820794 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6594462 6594754 -175820488 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6594767 6594825 -175820417 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6594825 6594866 -175820376 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6594866 6595152 -175820090 - L1MC4 LINE L1 -113 7929 7584 333 0 0 0 chr6 6595164 6595201 -175820041 + (T)n Simple_repeat Simple_repeat 1 37 0 235 296 148 11 chr6 6595997 6596186 -175819056 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6597530 6597663 -175817579 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6598288 6598362 -175816880 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6598579 6598671 -175816571 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6598976 6598997 -175816245 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6599029 6599469 -175815773 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6599469 6599544 -175815698 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6599544 6599583 -175815659 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6599746 6599968 -175815274 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6600154 6600371 -175814871 - MIR SINE MIR -21 241 12 13999 131 18 6 chr6 6600935 6603315 -175811927 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6604933 6605484 -175809758 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6607538 6607612 -175807630 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6607709 6608094 -175807148 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6608584 6608950 -175806292 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6610446 6610544 -175804698 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6610934 6611046 -175804196 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6611192 6611301 -175803941 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6611714 6612005 -175803237 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6613111 6613405 -175801837 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6614012 6614219 -175801023 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6614924 6615431 -175799811 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6615884 6615944 -175799298 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6617042 6617345 -175797897 + AluSg SINE Alu 3 306 -4 388 262 40 51 chr6 6617380 6617590 -175797652 - MIR SINE MIR -24 238 23 500 297 92 24 chr6 6618111 6618181 -175797061 - MIR SINE MIR -6 256 192 597 45 0 124 chr6 6618181 6618270 -175796972 + MADE1 DNA Mariner 1 78 -2 500 297 92 24 chr6 6618270 6618430 -175796812 - MIR SINE MIR -70 192 15 2285 100 0 0 chr6 6618504 6618805 -175796437 - AluY SINE Alu -10 301 1 19820 29 2 2 chr6 6618957 6621301 -175793941 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6621403 6621479 -175793763 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6621479 6621940 -175793302 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6622062 6622809 -175792433 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6622809 6623060 -175792182 + L1PA8 LINE L1 5157 5400 -746 183 80 0 0 chr6 6625667 6625692 -175789550 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3325 194 24 26 chr6 6625731 6626413 -175788829 + Tigger6a DNA MER2_type 1 680 -403 670 266 108 9 chr6 6626769 6626991 -175788251 - MIR SINE MIR -16 246 3 250 315 225 0 chr6 6627341 6627452 -175787790 - L2 LINE L2 0 3272 3137 320 58 43 14 chr6 6628985 6629054 -175786188 + (TA)n Simple_repeat Simple_repeat 1 71 0 188 333 120 26 chr6 6629999 6630116 -175785126 + L3 LINE CR1 1321 1448 -129 17330 28 2 0 chr6 6630694 6633396 -175781846 - L1PA3 LINE L1 0 6155 3452 1337 246 129 14 chr6 6633461 6633896 -175781346 + L1MC4 LINE L1 7375 7859 -183 2693 50 0 3 chr6 6633999 6634316 -175780926 - L1P2 LINE L1 -358 5796 5480 16072 27 0 0 chr6 6634316 6636862 -175778380 - L1PA3 LINE L1 0 6155 3606 2053 50 0 8 chr6 6637036 6637297 -175777945 - L1PA3 LINE L1 -2524 3622 3364 616 249 77 7 chr6 6637402 6637583 -175777659 - MER63 DNA MER1_type -19 1669 1 1253 263 134 10 chr6 6638377 6638788 -175776454 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6639879 6639920 -175775322 + (TC)n Simple_repeat Simple_repeat 2 42 0 452 327 13 13 chr6 6640218 6640377 -175774865 - MIR SINE MIR -46 216 58 253 303 98 25 chr6 6640401 6640523 -175774719 - MIR SINE MIR -9 253 123 345 299 21 0 chr6 6642283 6642380 -175772862 + MER81 DNA DNA 1 99 -15 391 158 0 49 chr6 6644233 6644315 -175770927 - L1MC2 LINE L1 -13 6331 6254 718 231 0 0 chr6 6644332 6644497 -175770745 - FRAM SINE Alu 0 182 18 3972 147 143 114 chr6 6644508 6644973 -175770269 - L1MC3 LINE L1 -84 7701 7251 243 261 80 23 chr6 6644973 6645061 -175770181 - MLT1F1 LTR MaLR -440 127 35 3972 147 143 114 chr6 6645061 6645621 -175769621 - L1MC3 LINE L1 -534 7251 6557 21 36 0 0 chr6 6645935 6645963 -175769279 + AT_rich Low_complexity Low_complexity 1 28 0 741 93 19 28 chr6 6645966 6646073 -175769169 - L1MC1 LINE L1 0 6333 6228 17226 157 15 11 chr6 6646073 6648780 -175766462 - ERVL LTR ERVL -2300 3464 748 392 311 36 55 chr6 6648791 6649137 -175766105 + L1ME LINE L1 5385 5741 -421 8138 256 44 34 chr6 6649330 6650481 -175764761 + L1MB4 LINE L1 32 1170 -5212 2307 143 25 25 chr6 6650481 6650845 -175764397 - THE1B LTR MaLR 0 364 1 8138 256 44 34 chr6 6650845 6652714 -175762528 + L1MB4 LINE L1 1170 3018 -3364 23060 38 3 0 chr6 6652714 6656338 -175758904 + L1PA5 LINE L1 2513 6149 -5 8138 256 44 34 chr6 6656338 6657533 -175757709 + L1MB4 LINE L1 3018 4199 -2183 216 0 0 0 chr6 6657533 6657557 -175757685 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8138 256 44 34 chr6 6657557 6658518 -175756724 + L1MB4 LINE L1 4199 5403 -979 3172 214 28 14 chr6 6658521 6659337 -175755905 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6659831 6660114 -175755128 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6660339 6660784 -175754458 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6660998 6661019 -175754223 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6661109 6661963 -175753279 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6662024 6662394 -175752848 - L1ME2 LINE L1 -22 6142 5829 1966 190 130 66 chr6 6662394 6662969 -175752273 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6662969 6663284 -175751958 - L1ME2 LINE L1 -335 5829 5497 318 143 76 95 chr6 6663406 6663511 -175751731 - L1MC4a LINE L1 -913 5233 5131 22 0 0 0 chr6 6665563 6665585 -175749657 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6665722 6666833 -175748409 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6666834 6666874 -175748368 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6666874 6666918 -175748324 + L1M4 LINE L1 1194 1237 -5305 4284 236 22 17 chr6 6666927 6668200 -175747042 + L1ME4a LINE L1 3867 5145 -1001 480 225 0 0 chr6 6668202 6668331 -175746911 + MLT2B3 LTR ERVL 1 129 -425 2845 26 0 4 chr6 6668331 6668730 -175746512 - L1P LINE L1 -730 5425 5028 6355 22 4 0 chr6 6668730 6669460 -175745782 + L1PA3 LINE L1 5419 6154 -1 1850 204 25 28 chr6 6669462 6669858 -175745384 + MLT2B3 LTR ERVL 122 516 -38 300 119 0 68 chr6 6669876 6669935 -175745307 + MLT2C2 LTR ERVL 407 461 -3 596 146 24 141 chr6 6669938 6670151 -175745091 + L1ME4a LINE L1 5143 5330 -816 1152 164 0 48 chr6 6670159 6670366 -175744876 + AluJo SINE Alu 95 291 -21 701 172 38 19 chr6 6670368 6670525 -175744717 + L1ME4a LINE L1 5323 5482 -702 490 242 160 50 chr6 6670628 6670909 -175744333 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6671136 6671230 -175744012 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6671775 6672282 -175742960 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6672353 6672785 -175742457 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6672859 6673093 -175742149 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6673158 6673489 -175741753 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6674551 6675322 -175739920 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6675873 6676464 -175738778 - LTR10C LTR ERV1 0 591 1 4152 175 28 49 chr6 6679618 6681096 -175734146 + L1MA9 LINE L1 4721 6176 -136 357 24 0 0 chr6 6681096 6681138 -175734104 + (CA)n Simple_repeat Simple_repeat 1 42 0 4152 175 28 49 chr6 6681138 6681251 -175733991 + L1MA9 LINE L1 6176 6290 -22 245 179 0 18 chr6 6681261 6681317 -175733925 + GA-rich Low_complexity Low_complexity 2 56 0 2081 233 49 60 chr6 6681325 6682324 -175732918 + L1ME3 LINE L1 5172 6157 -5 317 303 57 25 chr6 6682417 6682539 -175732703 + L2 LINE L2 3179 3304 -9 197 360 88 8 chr6 6682712 6682837 -175732405 - MER5A DNA MER1_type 0 189 55 666 265 85 51 chr6 6684623 6684917 -175730325 + L2 LINE L2 3010 3313 0 568 246 0 9 chr6 6685036 6685150 -175730092 + MER81 DNA DNA 1 113 -1 314 297 76 51 chr6 6685236 6685512 -175729730 + LTR33 LTR ERVL 236 518 -3 306 292 153 0 chr6 6685567 6685704 -175729538 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6686392 6686422 -175728820 + (CA)n Simple_repeat Simple_repeat 1 30 0 679 169 80 85 chr6 6686569 6686770 -175728472 + MLT1C LTR MaLR 53 252 -215 1207 96 0 0 chr6 6686770 6686937 -175728305 - L1PA13 LINE L1 -485 5678 5512 3090 120 2 0 chr6 6686941 6687408 -175727834 + L1PA13 LINE L1 5694 6161 -2 576 249 124 5 chr6 6687423 6687624 -175727618 + MLT1C LTR MaLR 278 502 -3 336 275 144 6 chr6 6688567 6688734 -175726508 + LTR33 LTR ERVL 1 190 -331 328 288 25 0 chr6 6688822 6688940 -175726302 + LTR33 LTR ERVL 339 459 -62 216 303 67 22 chr6 6689133 6689222 -175726020 + MIR SINE MIR 110 202 -60 779 151 16 0 chr6 6690694 6690820 -175724422 + FRAM SINE Alu 19 146 -30 22 56 0 0 chr6 6690953 6690989 -175724253 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6691048 6691092 -175724150 + T-rich Low_complexity Low_complexity 4 48 0 2148 129 0 13 chr6 6691098 6691407 -175723835 - AluSx SINE Alu -7 305 1 223 245 19 19 chr6 6692277 6692330 -175722912 + L2 LINE L2 3214 3266 -6 655 174 174 6 chr6 6692443 6692604 -175722638 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6692671 6692696 -175722546 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6696338 6696391 -175718851 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1172 275 137 33 chr6 6697218 6698183 -175717059 + HAL1 LINE L1 812 1876 -631 236 277 0 42 chr6 6698624 6698743 -175716499 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6698848 6698888 -175716354 + GA-rich Low_complexity Low_complexity 4 43 0 315 257 59 0 chr6 6698951 6699052 -175716190 - LTR67 LTR ERVL -3 554 448 375 316 41 46 chr6 6699332 6699550 -175715692 - LTR67 LTR ERVL -296 261 45 22 0 0 0 chr6 6699829 6699851 -175715391 + AT_rich Low_complexity Low_complexity 1 22 0 490 225 11 0 chr6 6700446 6700535 -175714707 - L2 LINE L2 0 3272 3183 401 240 101 78 chr6 6700561 6700778 -175714464 + MIR SINE MIR 3 224 -38 284 357 35 28 chr6 6700851 6700994 -175714248 - L2 LINE L2 -180 3092 2949 523 296 138 13 chr6 6702243 6702561 -175712681 - L2 LINE L2 -1088 2226 1869 258 221 221 18 chr6 6702619 6702732 -175712510 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6703586 6703705 -175711537 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6703705 6703785 -175711457 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6703860 6704128 -175711114 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6704156 6704261 -175710981 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6704261 6704422 -175710820 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6704888 6705030 -175710212 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6705888 6705939 -175709303 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6706001 6706062 -175709180 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6706051 6706536 -175708706 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6706549 6707229 -175708013 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6707287 6707355 -175707887 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6707431 6707911 -175707331 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6707914 6708251 -175706991 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6708120 6708296 -175706946 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6708225 6708508 -175706734 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6708675 6709029 -175706213 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6709182 6709762 -175705480 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6709778 6709986 -175705256 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6712075 6712376 -175702866 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6714127 6714248 -175700994 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6714531 6714811 -175700431 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6716608 6716879 -175698363 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6717001 6717356 -175697886 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6717613 6717916 -175697326 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6718465 6718750 -175696492 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6719041 6719218 -175696024 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6719533 6719733 -175695509 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6720152 6720367 -175694875 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6720367 6720501 -175694741 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6721163 6721445 -175693797 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6721450 6721477 -175693765 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6721889 6722187 -175693055 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6722397 6722453 -175692789 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6724172 6725074 -175690168 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6725242 6725612 -175689630 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6725784 6726107 -175689135 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6726174 6726465 -175688777 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6726647 6726769 -175688473 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6726772 6727271 -175687971 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6729724 6729870 -175685372 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6730083 6730215 -175685027 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6730328 6730572 -175684670 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6730607 6730646 -175684596 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6730690 6730909 -175684333 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6731028 6731108 -175684134 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6731296 6731323 -175683919 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6733228 6733375 -175681867 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6733375 6733676 -175681566 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6733676 6733809 -175681433 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6733849 6733870 -175681372 + AT_rich Low_complexity Low_complexity 1 21 0 1692 149 7 55 chr6 6734127 6734416 -175680826 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6734419 6734475 -175680767 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6734475 6734536 -175680706 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 290 308 116 27 chr6 6735522 6735668 -175679574 - MIR3 SINE MIR -34 174 16 956 275 116 27 chr6 6735883 6736479 -175678763 + L2 LINE L2 2188 2836 -478 701 276 126 43 chr6 6736482 6737000 -175678242 - L1MEd LINE L1 -1005 5124 4542 668 265 157 13 chr6 6737006 6737383 -175677859 - L1MEd LINE L1 -2196 3933 3503 1240 168 10 14 chr6 6737384 6737593 -175677649 - AluJo SINE Alu -17 295 88 490 286 70 27 chr6 6737598 6738154 -175677088 - L1MEd LINE L1 -2630 3499 2920 315 302 71 8 chr6 6738286 6738412 -175676830 - L1MEd LINE L1 -5394 725 592 4267 136 18 44 chr6 6738858 6739653 -175675589 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6740733 6740755 -175674487 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1903 87 77 45 chr6 6740900 6741187 -175674055 - AluSq SINE Alu -17 296 1 1955 83 8 30 chr6 6741597 6741862 -175673380 + AluSg SINE Alu 42 300 -10 1099 109 0 0 chr6 6742442 6742589 -175672653 - AluSq/x SINE Alu -165 148 2 191 375 11 11 chr6 6744759 6744847 -175670395 + L2 LINE L2 1175 1262 -2052 647 249 98 21 chr6 6745101 6745427 -175669815 + HAL1 LINE L1 871 1221 -1286 229 280 0 0 chr6 6745427 6745477 -175669765 - MER45A DNA AcHobo -4 174 125 2131 115 0 3 chr6 6745489 6745775 -175669467 + AluSc SINE Alu 1 285 -24 1095 127 66 71 chr6 6745793 6746005 -175669237 + AluJo SINE Alu 20 230 -82 1184 168 172 27 chr6 6746014 6746276 -175668966 - AluJo SINE Alu -2 300 1 319 140 60 0 chr6 6746337 6746387 -175668855 + AluJo SINE Alu 235 287 -15 294 253 38 0 chr6 6746360 6746439 -175668803 - MER45A DNA AcHobo -35 143 62 * 909 177 100 15 chr6 6746629 6746900 -175668342 + MER33 DNA MER1_type 14 307 -17 357 257 61 20 chr6 6747037 6747185 -175668057 - LTR33A LTR ERVL -14 509 356 230 321 85 0 chr6 6747401 6747507 -175667735 - LTR33A LTR ERVL -350 173 59 703 260 120 53 chr6 6747557 6748123 -175667119 + HAL1 LINE L1 1884 2487 -20 409 273 44 108 chr6 6748620 6748964 -175666278 + MLT1I LTR MaLR 81 402 -7 1259 222 68 31 chr6 6749170 6749522 -175665720 - MLT1A1 LTR MaLR 0 365 1 878 67 0 0 chr6 6749859 6749964 -175665278 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6750242 6750552 -175664690 + AluSx SINE Alu 1 311 -1 1587 97 162 16 chr6 6750554 6750825 -175664417 + AluSx SINE Alu 2 308 0 487 306 44 14 chr6 6752567 6752792 -175662450 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6754397 6754468 -175660774 - L1MD2 LINE L1 -3 6356 6289 1802 226 108 26 chr6 6754580 6755155 -175660087 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6755170 6756886 -175658356 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6756886 6757461 -175657781 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6757461 6757565 -175657677 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6757565 6758155 -175657087 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6758155 6758368 -175656874 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6758368 6758605 -175656637 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6758605 6759124 -175656118 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6759124 6759498 -175655744 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6759498 6761081 -175654161 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6761083 6761464 -175653778 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6761464 6761659 -175653583 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6761660 6761788 -175653454 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6762372 6762398 -175652844 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6763464 6763624 -175651618 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6763652 6763789 -175651453 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6763930 6764389 -175650853 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6764411 6764656 -175650586 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6764672 6765200 -175650042 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6765222 6765343 -175649899 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6767349 6767621 -175647621 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6767621 6767669 -175647573 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6768249 6770367 -175644875 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6770486 6770754 -175644488 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6771166 6771298 -175643944 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6771287 6772121 -175643121 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6772327 6772622 -175642620 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6772626 6772753 -175642489 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6772753 6772907 -175642335 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6772924 6773240 -175642002 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6773240 6773376 -175641866 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6773594 6773747 -175641495 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6774505 6774611 -175640631 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6774863 6775048 -175640194 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6775954 6776072 -175639170 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6776099 6776130 -175639112 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6776130 6776210 -175639032 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6776559 6776620 -175638622 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6777118 6777454 -175637788 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6777525 6777833 -175637409 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6778736 6778837 -175636405 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6778840 6779089 -175636153 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6779208 6779290 -175635952 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6780167 6780192 -175635050 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6780457 6780578 -175634664 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6780967 6781475 -175633767 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6781940 6781985 -175633257 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6782245 6782540 -175632702 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6783088 6783250 -175631992 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6783129 6783281 -175631961 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6783442 6783795 -175631447 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6784207 6784395 -175630847 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6786430 6786709 -175628533 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6786709 6787012 -175628230 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6787012 6787049 -175628193 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6787049 6787146 -175628096 - Tigger7 DNA MER2_type -2 2489 2394 1167 218 75 0 chr6 6787147 6787386 -175627856 - Tigger7 DNA MER2_type -2222 265 9 362 143 18 0 chr6 6787393 6787449 -175627793 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6788458 6788548 -175626694 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6789415 6789762 -175625480 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6789906 6790353 -175624889 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6790358 6790451 -175624791 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6791108 6791425 -175623817 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6791658 6791782 -175623460 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6791956 6792035 -175623207 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6792039 6792351 -175622891 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6796565 6796709 -175618533 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6797179 6797489 -175617753 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6798310 6798613 -175616629 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6798646 6798885 -175616357 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6799379 6799763 -175615479 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6799784 6800147 -175615095 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6800311 6800502 -175614740 + L1MEd LINE L1 42 234 -5885 207 0 0 0 chr6 6800502 6800525 -175614717 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6800525 6801550 -175613692 + L1MEd LINE L1 234 1245 -4874 817 247 63 103 chr6 6802068 6802525 -175612717 - MLT1F LTR MaLR 0 542 104 3793 143 67 45 chr6 6802526 6803842 -175611400 - pTR5 LTR ERV1 0 2438 760 359 222 145 0 chr6 6803842 6803959 -175611283 - MLT1F LTR MaLR -453 140 7 733 180 0 0 chr6 6804071 6804210 -175611032 + L1MB2 LINE L1 6033 6171 0 21 0 0 0 chr6 6804457 6804478 -175610764 + AT_rich Low_complexity Low_complexity 1 21 0 2274 111 16 0 chr6 6804487 6804794 -175610448 + AluSx SINE Alu 1 312 0 721 247 75 45 chr6 6804912 6805179 -175610063 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6805221 6805382 -175609860 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6806656 6806757 -175608485 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6806836 6806955 -175608287 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6806964 6807217 -175608025 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6808222 6808370 -175606872 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6808578 6808668 -175606574 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6809022 6810674 -175604568 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6812017 6812181 -175603061 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6812309 6812609 -175602633 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6812617 6812750 -175602492 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6812906 6812989 -175602253 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6814119 6814198 -175601044 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6814683 6814724 -175600518 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6814726 6815010 -175600232 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6816249 6816277 -175598965 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6816683 6816793 -175598449 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6817013 6817216 -175598026 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6818368 6818585 -175596657 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6819813 6819941 -175595301 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6819952 6820232 -175595010 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6820315 6820467 -175594775 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6820484 6820549 -175594693 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6821244 6821306 -175593936 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6822558 6822627 -175592615 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6823353 6823533 -175591709 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6824382 6824531 -175590711 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6824549 6824763 -175590479 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6825104 6825223 -175590019 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6825394 6825443 -175589799 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6825560 6825678 -175589564 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6826689 6826955 -175588287 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6827585 6827621 -175587621 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6827621 6827976 -175587266 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6827976 6828069 -175587173 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6828135 6828214 -175587028 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6828390 6828544 -175586698 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6828550 6828684 -175586558 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6828749 6828822 -175586420 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6828833 6828875 -175586367 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6829084 6829308 -175585934 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6830256 6830346 -175584896 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6830365 6830547 -175584695 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6832052 6832422 -175582820 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6832863 6833049 -175582193 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6833049 6833286 -175581956 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6833874 6834180 -175581062 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6834975 6835289 -175579953 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6835298 6835495 -175579747 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6835527 6835775 -175579467 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6835775 6836041 -175579201 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6836263 6836695 -175578547 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6837145 6837288 -175577954 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6837307 6837614 -175577628 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6838563 6838630 -175576612 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6839042 6839136 -175576106 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6839935 6840096 -175575146 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6840107 6840534 -175574708 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6840534 6840655 -175574587 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6840682 6840753 -175574489 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6841111 6841393 -175573849 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6841700 6841728 -175573514 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6842181 6842395 -175572847 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6842638 6842759 -175572483 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6842928 6843022 -175572220 - MER91C DNA MER1_type -30 110 13 417 267 99 0 chr6 6843090 6843191 -175572051 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6843263 6844833 -175570409 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6844833 6844882 -175570360 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6844882 6845499 -175569743 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6845512 6845730 -175569512 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6845735 6845858 -175569384 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6845858 6846222 -175569020 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6846222 6846325 -175568917 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6846589 6846655 -175568587 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6847210 6847482 -175567760 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6847559 6847630 -175567612 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6847632 6848060 -175567182 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6848643 6848951 -175566291 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6850069 6850274 -175564968 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6850553 6851008 -175564234 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6851040 6851361 -175563881 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6852990 6853017 -175562225 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6853826 6854175 -175561067 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6854175 6854779 -175560463 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6854779 6854876 -175560366 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6854962 6855184 -175560058 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6855504 6855813 -175559429 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6856643 6856863 -175558379 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6857159 6857247 -175557995 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6858833 6858930 -175556312 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6858960 6859070 -175556172 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6859453 6859710 -175555532 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6859744 6860216 -175555026 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6860238 6860377 -175554865 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6860394 6860517 -175554725 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6861158 6861319 -175553923 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6861507 6861642 -175553600 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6861918 6862227 -175553015 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6862243 6862310 -175552932 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6863575 6863703 -175551539 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6864948 6865013 -175550229 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6865030 6869815 -175545427 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6869817 6869882 -175545360 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6870338 6870630 -175544612 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6870665 6870899 -175544343 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6871009 6871303 -175543939 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6871345 6871375 -175543867 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6871375 6871658 -175543584 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6872201 6872517 -175542725 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6872530 6872621 -175542621 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6872692 6872751 -175542491 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6872753 6872891 -175542351 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6872909 6873207 -175542035 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6874449 6874745 -175540497 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6875179 6875330 -175539912 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6875426 6875471 -175539771 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6876301 6876516 -175538726 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6877183 6877215 -175538027 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6877685 6878137 -175537105 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6878548 6878736 -175536506 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6879383 6879498 -175535744 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6879670 6879973 -175535269 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6879989 6880155 -175535087 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6880885 6880935 -175534307 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6881240 6882219 -175533023 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6883114 6883501 -175531741 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6883578 6883762 -175531480 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6884539 6885263 -175529979 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6885414 6885435 -175529807 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6886103 6886188 -175529054 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6886926 6887106 -175528136 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6887110 6888560 -175526682 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6890224 6890531 -175524711 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6891345 6892101 -175523141 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6892555 6892653 -175522589 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6893818 6893891 -175521351 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6894095 6894185 -175521057 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6894426 6894518 -175520724 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6894489 6894624 -175520618 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6894767 6894919 -175520323 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6894927 6895232 -175520010 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6895500 6895547 -175519695 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6895555 6895995 -175519247 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6895995 6896278 -175518964 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6896283 6896306 -175518936 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6896428 6896587 -175518655 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6898303 6898428 -175516814 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6899299 6899609 -175515633 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6900019 6900141 -175515101 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6900362 6900412 -175514830 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6900896 6901206 -175514036 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6902011 6902233 -175513009 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6902266 6902772 -175512470 + MER45B DNA AcHobo 1 526 -514 2084 116 13 3 chr6 6902772 6903082 -175512160 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6903082 6903102 -175512140 + MER45B DNA AcHobo 526 544 -496 794 209 0 7 chr6 6903688 6903841 -175511401 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6903841 6903872 -175511370 + AT_rich Low_complexity Low_complexity 1 31 0 235 273 68 11 chr6 6904353 6904441 -175510801 - MIR SINE MIR -97 111 19 1101 186 14 18 chr6 6904668 6904888 -175510354 - MER20 DNA MER1_type 0 219 1 366 244 33 0 chr6 6905032 6905122 -175510120 - MER89-int LTR ERV1 -4163 2638 2546 1985 107 0 69 chr6 6905166 6905485 -175509757 + AluSx SINE Alu 1 297 -15 1191 251 72 55 chr6 6907917 6908302 -175506940 - MER92C LTR ERV1 -2 552 154 1954 159 59 14 chr6 6908302 6908673 -175506569 - MLT1B LTR MaLR -2 388 1 1191 251 72 55 chr6 6908673 6908830 -175506412 - MER92C LTR ERV1 -400 154 1 1138 159 68 19 chr6 6910776 6910983 -175504259 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6911835 6911860 -175503382 + (A)n Simple_repeat Simple_repeat 1 25 0 1109 136 16 0 chr6 6912632 6912816 -175502426 + L1MA4 LINE L1 6107 6293 -7 2824 10 0 19 chr6 6912835 6913133 -175502109 + AluYa5 SINE Alu 1 294 -17 207 0 0 0 chr6 6913133 6913156 -175502086 + (TA)n Simple_repeat Simple_repeat 1 23 0 2824 10 0 19 chr6 6913156 6913170 -175502072 + AluYa5 SINE Alu 294 307 -4 2167 122 3 10 chr6 6913427 6913739 -175501503 + AluSx SINE Alu 2 311 -1 795 185 143 21 chr6 6914238 6914427 -175500815 - MER20 DNA MER1_type 0 219 8 668 203 78 78 chr6 6914441 6914762 -175500480 + MER33 DNA MER1_type 1 321 -3 2118 105 10 3 chr6 6915342 6915636 -175499606 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6916064 6916087 -175499155 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 352 333 36 18 chr6 6916267 6916432 -175498810 - MIR3 SINE MIR -5 203 36 429 301 31 50 chr6 6917385 6917480 -175497762 + L1ME3A LINE L1 5852 5947 -223 3121 186 20 8 chr6 6917480 6918086 -175497156 + L1MB3 LINE L1 5565 6177 -6 429 301 31 50 chr6 6918086 6918309 -175496933 + L1ME3A LINE L1 5947 6164 -6 223 291 139 12 chr6 6919164 6919250 -175495992 - MIR3 SINE MIR -48 160 64 1824 174 16 10 chr6 6919250 6919560 -175495682 + AluJo SINE Alu 1 312 0 190 313 78 0 chr6 6919759 6919823 -175495419 - MIR3 SINE MIR -8 200 132 333 275 80 22 chr6 6923635 6923773 -175491469 + MIR SINE MIR 117 262 0 285 298 256 21 chr6 6923807 6924066 -175491176 - L3 LINE CR1 -41 1536 1339 2050 138 0 7 chr6 6924066 6924362 -175490880 - AluY SINE Alu -17 294 1 2289 116 0 3 chr6 6924362 6924663 -175490579 - AluSx SINE Alu -12 300 1 285 298 256 21 chr6 6924663 6924691 -175490551 - L3 LINE CR1 -237 1340 1180 581 296 108 35 chr6 6924762 6925133 -175490109 - L3 LINE CR1 -567 1010 613 317 318 139 9 chr6 6926208 6926431 -175488811 + MER112 DNA MER1_type 1 252 -8 377 278 56 0 chr6 6926449 6926575 -175488667 + HAL1 LINE L1 11 143 -2364 403 295 23 8 chr6 6927014 6927143 -175488099 + MLT1L LTR MaLR 449 579 -36 791 289 64 13 chr6 6927151 6927528 -175487714 + HAL1 LINE L1 1379 1774 -733 2343 232 40 2 chr6 6927681 6928212 -175487030 - MLT1F1 LTR MaLR -16 551 1 452 276 49 31 chr6 6928216 6928379 -175486863 + HAL1 LINE L1 2007 2172 -335 1787 129 43 0 chr6 6928388 6928644 -175486598 + AluSx SINE Alu 1 267 -45 5038 158 84 20 chr6 6928739 6930256 -175484986 + L1MC1 LINE L1 4720 6333 0 730 299 211 19 chr6 6932948 6933379 -175481863 + L2 LINE L2 2205 2718 -596 564 212 58 0 chr6 6935030 6935167 -175480075 - MIR SINE MIR -14 248 104 309 302 132 21 chr6 6935378 6935567 -175479675 + L2 LINE L2 2210 2419 -895 1403 272 71 29 chr6 6935712 6936230 -175479012 + MLT1F1 LTR MaLR 9 548 -19 360 348 105 0 chr6 6936241 6936422 -175478820 + L2 LINE L2 2649 2848 -466 2158 124 7 0 chr6 6937279 6937569 -175477673 - AluSx SINE Alu -20 292 1 297 246 55 27 chr6 6937725 6937835 -175477407 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6938483 6938558 -175476684 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6938614 6938675 -175476567 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 423 188 134 27 chr6 6938755 6938867 -175476375 + MER63 DNA MER1_type 1 750 -312 275 267 0 13 chr6 6938853 6938928 -175476314 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6939000 6939012 -175476230 + (A)n Simple_repeat Simple_repeat 1 12 -27 1851 159 6 49 chr6 6939012 6939339 -175475903 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6939339 6939365 -175475877 + (A)n Simple_repeat Simple_repeat 11 39 0 184 356 27 0 chr6 6940224 6940297 -175474945 - L2 LINE L2 -31 3282 3208 348 242 134 13 chr6 6940651 6940800 -175474442 - MER104 DNA Tc2 -13 167 1 3963 158 154 30 chr6 6941821 6943103 -175472139 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6943842 6943920 -175471322 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6943935 6944113 -175471129 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6944144 6944202 -175471040 + (CA)n Simple_repeat Simple_repeat 2 58 0 183 174 65 65 chr6 6944273 6944319 -175470923 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6944677 6944744 -175470498 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 239 210 16 0 chr6 6944745 6944807 -175470435 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6945353 6945391 -175469851 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6947363 6947394 -175467848 + (TA)n Simple_repeat Simple_repeat 2 32 0 210 71 0 0 chr6 6948562 6948590 -175466652 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6949400 6949473 -175465769 + GA-rich Low_complexity Low_complexity 3 76 0 264 250 10 87 chr6 6949888 6949945 -175465297 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6949945 6949974 -175465268 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 264 250 10 87 chr6 6949974 6950020 -175465222 + MER21B LTR ERV1 59 107 -756 2483 236 111 26 chr6 6950020 6950786 -175464456 + MER21B LTR ERV1 22 852 -11 837 177 58 22 chr6 6950909 6951135 -175464107 + MER33 DNA MER1_type 9 242 -82 2475 138 52 54 chr6 6951151 6951170 -175464072 - L1MB3 LINE L1 -17 6166 6148 2262 106 0 0 chr6 6951170 6951463 -175463779 - AluSg SINE Alu -17 293 1 2475 138 52 54 chr6 6951463 6951924 -175463318 - L1MB3 LINE L1 -35 6148 5617 2322 110 3 0 chr6 6951924 6952233 -175463009 - AluSg SINE Alu 0 310 1 2475 138 52 54 chr6 6952233 6952504 -175462738 - L1MB3 LINE L1 -566 5617 5347 549 106 0 43 chr6 6952505 6952599 -175462643 + MER33 DNA MER1_type 273 362 -1 2266 110 3 3 chr6 6953021 6953321 -175461921 + AluSq SINE Alu 1 300 -13 2226 119 10 3 chr6 6953770 6954081 -175461161 - AluSq SINE Alu 0 313 1 2342 105 0 3 chr6 6954352 6954665 -175460577 + AluSx SINE Alu 1 312 0 214 300 27 55 chr6 6954827 6954937 -175460305 + MIR SINE MIR 98 204 -58 1761 163 7 14 chr6 6955202 6955497 -175459745 + AluJo SINE Alu 1 293 -19 303 207 97 10 chr6 6956823 6956930 -175458312 + MER53 DNA DNA 10 123 -66 4672 158 144 31 chr6 6958507 6959914 -175455328 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6960175 6960325 -175454917 - L2 LINE L2 -328 2985 2820 2149 273 103 50 chr6 6960335 6960624 -175454618 - L2 LINE L2 -650 2664 2392 2042 63 0 0 chr6 6960624 6960876 -175454366 - L1PA6 LINE L1 -4 6150 5899 2149 273 103 50 chr6 6960876 6961149 -175454093 - L2 LINE L2 -922 2392 2135 1272 230 26 10 chr6 6961149 6961453 -175453789 + AluJb SINE Alu 4 312 0 2149 273 103 50 chr6 6961453 6961612 -175453630 - L2 LINE L2 -1179 2135 1986 2066 140 110 8 chr6 6961612 6962004 -175453238 + MSTB1 LTR MaLR 1 432 0 2149 273 103 50 chr6 6962004 6962481 -175452761 - L2 LINE L2 -1328 1986 1400 1401 155 83 31 chr6 6962497 6962787 -175452455 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6962796 6962829 -175452413 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6962830 6963085 -175452157 + AluSg SINE Alu 1 306 -4 717 204 117 0 chr6 6963085 6963247 -175451995 - MER58 DNA MER1_type -160 181 1 31 20 0 20 chr6 6964018 6964047 -175451195 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6964047 6964347 -175450895 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6964347 6964366 -175450876 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6964444 6964557 -175450685 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6964661 6964963 -175450279 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6965113 6965335 -175449907 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6965410 6965452 -175449790 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6965764 6966062 -175449180 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6966815 6966836 -175448406 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6967153 6967700 -175447542 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6967816 6968116 -175447126 + AluSx SINE Alu 1 300 -12 870 164 0 16 chr6 6968133 6968316 -175446926 + GA-rich Low_complexity Low_complexity 1 180 0 270 136 0 0 chr6 6968316 6968360 -175446882 + (GGA)n Simple_repeat Simple_repeat 3 46 0 584 266 104 57 chr6 6969706 6970109 -175445133 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6970247 6970348 -175444894 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6970348 6970648 -175444594 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6970648 6970670 -175444572 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6970845 6970972 -175444270 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6971288 6971593 -175443649 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6971608 6971659 -175443583 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6971992 6972125 -175443117 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6972255 6972570 -175442672 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6972731 6972941 -175442301 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6972984 6973444 -175441798 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6973505 6974145 -175441097 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6974152 6975438 -175439804 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6975991 6976107 -175439135 + AluSq/x SINE Alu 23 135 -178 225 229 17 68 chr6 6976110 6976228 -175439014 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6976450 6976597 -175438645 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6976565 6976859 -175438383 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6977560 6977620 -175437622 - L1PA8 LINE L1 -2 6170 6111 1963 108 0 0 chr6 6977701 6977969 -175437273 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6978635 6978662 -175436580 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6979277 6979352 -175435890 + AluSq/x SINE Alu 64 139 -174 1676 100 4 0 chr6 6979352 6979582 -175435660 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6979686 6979857 -175435385 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6980016 6980053 -175435189 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6980134 6980170 -175435072 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6981242 6981271 -175433971 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6981291 6981314 -175433928 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6981315 6981494 -175433748 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6981618 6981675 -175433567 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6981675 6981806 -175433436 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6981806 6982273 -175432969 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6982448 6982483 -175432759 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6982483 6982512 -175432730 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6982512 6984158 -175431084 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6984300 6984603 -175430639 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6985088 6985356 -175429886 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6985377 6985763 -175429479 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6985868 6985997 -175429245 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6986023 6986063 -175429179 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6986113 6986267 -175428975 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6986366 6986451 -175428791 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6987382 6987463 -175427779 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6987650 6987681 -175427561 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6987681 6987802 -175427440 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6988370 6988498 -175426744 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6988394 6988514 -175426728 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6988601 6988898 -175426344 - AluJb SINE Alu -1 311 18 183 271 14 43 chr6 6991149 6991204 -175424038 + L2 LINE L2 3165 3220 -93 2034 116 0 0 chr6 6991204 6991511 -175423731 - AluSq SINE Alu 0 307 1 183 271 14 43 chr6 6991511 6991524 -175423718 + L2 LINE L2 3220 3232 -81 270 226 200 43 chr6 6992374 6992489 -175422753 + MIR SINE MIR 124 256 -6 254 318 79 16 chr6 6992590 6992716 -175422526 - MARNA DNA Mariner -380 206 73 2133 69 0 34 chr6 6993004 6993329 -175421913 + AluY SINE Alu 3 317 0 2047 137 0 0 chr6 6993496 6993803 -175421439 - AluSx SINE Alu -5 307 1 587 308 67 5 chr6 6993805 6994013 -175421229 - MIR SINE MIR -36 226 6 2422 149 38 33 chr6 6994174 6994598 -175420644 + MSTB LTR MaLR 1 426 0 2320 143 30 40 chr6 6995908 6996240 -175419002 - MSTC LTR MaLR -1 427 98 2438 63 0 0 chr6 6996240 6996542 -175418700 - AluY SINE Alu -9 302 1 2320 143 30 40 chr6 6996542 6996637 -175418605 - MSTC LTR MaLR -330 98 4 292 341 82 12 chr6 6997004 6997174 -175418068 + L2 LINE L2 2935 3116 -197 356 246 6 0 chr6 6997282 6997457 -175417785 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6997459 6997504 -175417738 + (CA)n Simple_repeat Simple_repeat 1 45 0 213 319 56 0 chr6 6997881 6997953 -175417289 - MIR SINE MIR -68 140 65 2210 112 0 0 chr6 6998076 6998379 -175416863 - AluSx SINE Alu -9 303 1 420 255 134 13 chr6 7000227 7000376 -175414866 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 7001368 7001501 -175413741 + CT-rich Low_complexity Low_complexity 1 121 0 356 288 102 0 chr6 7001633 7001751 -175413491 + MLT1J LTR MaLR 67 196 -315 401 185 12 0 chr6 7001773 7001854 -175413388 - FRAM/FAM SINE Alu -93 82 1 449 273 16 23 chr6 7001857 7001985 -175413257 + MLT1J LTR MaLR 184 310 -201 343 286 44 55 chr6 7002679 7002861 -175412381 + LTR16C LTR ERVL 312 491 0 554 243 40 28 chr6 7002861 7003038 -175412204 + MLT1J LTR MaLR 311 489 -22 1898 116 42 0 chr6 7003063 7003348 -175411894 + AluSx SINE Alu 1 297 -15 460 289 159 32 chr6 7003700 7003977 -175411265 + MLT1I LTR MaLR 22 333 -76 1011 141 0 0 chr6 7005540 7005696 -175409546 - FRAM SINE Alu -12 164 9 249 250 31 73 chr6 7005904 7006000 -175409242 + MIR3 SINE MIR 108 199 -9 455 253 77 6 chr6 7006386 7006556 -175408686 + L1MB8 LINE L1 5944 6125 -53 1925 130 0 14 chr6 7006572 7006864 -175408378 - AluSx SINE Alu -24 288 1 679 313 25 10 chr6 7007483 7007684 -175407558 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 7008557 7008588 -175406654 + (GGA)n Simple_repeat Simple_repeat 2 32 0 610 218 14 49 chr6 7009300 7009442 -175405800 - FLAM_A SINE Alu 0 142 6 284 254 203 17 chr6 7009608 7009726 -175405516 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 7009723 7009850 -175405392 - MIR3 SINE MIR -35 173 30 * 1935 74 67 7 chr6 7009864 7010202 -175405040 - AluY SINE Alu 0 354 1 1217 55 0 0 chr6 7010202 7010347 -175404895 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 7010914 7010971 -175404271 + CT-rich Low_complexity Low_complexity 1 59 0 319 307 79 18 chr6 7010978 7011092 -175404150 - L2 LINE L2 0 3313 3193 351 177 21 115 chr6 7012171 7012230 -175403012 - MER103 DNA DNA -77 89 41 1520 166 10 40 chr6 7012230 7012531 -175402711 - AluJo SINE Alu -20 292 1 351 177 21 115 chr6 7012531 7012567 -175402675 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 7012651 7012689 -175402553 + (CA)n Simple_repeat Simple_repeat 2 39 0 1141 248 56 12 chr6 7013164 7013483 -175401759 - MER46C DNA MER2_type 0 338 6 2213 89 0 16 chr6 7013902 7014216 -175401026 - AluY SINE Alu -2 309 1 2065 109 23 0 chr6 7014720 7014923 -175400319 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 7014923 7014950 -175400292 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2065 109 23 0 chr6 7014950 7015068 -175400174 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 7015821 7015870 -175399372 + MIR SINE MIR 199 249 -13 2213 89 3 0 chr6 7016036 7016328 -175398914 + AluSp SINE Alu 1 293 -20 1416 213 117 47 chr6 7016353 7016562 -175398680 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 7016562 7016582 -175398660 + (CA)n Simple_repeat Simple_repeat 1 20 0 1416 213 117 47 chr6 7016582 7016775 -175398467 + L1MD2 LINE L1 6107 6344 -15 319 310 60 10 chr6 7016938 7017038 -175398204 + MER91C DNA MER1_type 36 140 0 208 135 0 0 chr6 7018154 7018191 -175397051 + (CCCA)n Simple_repeat Simple_repeat 3 39 0 248 197 0 14 chr6 7018439 7018510 -175396732 + GA-rich Low_complexity Low_complexity 5 74 0 572 202 10 0 chr6 7018541 7018645 -175396597 + MIR SINE MIR 53 157 -105 658 168 27 0 chr6 7018652 7018801 -175396441 + (ATGGTG)n Simple_repeat Simple_repeat 3 155 0 977 109 35 0 chr6 7018910 7019084 -175396158 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 296 263 32 11 chr6 7019084 7019179 -175396063 + MIR SINE MIR 149 245 -17 415 224 51 10 chr6 7020016 7020114 -175395128 + MIR SINE MIR 87 188 -74 764 179 0 0 chr6 7020288 7020411 -175394831 + FLAM_C SINE Alu 1 123 -20 364 214 10 10 chr6 7020467 7020570 -175394672 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 7020575 7020601 -175394641 + (GA)n Simple_repeat Simple_repeat 2 27 0 356 302 24 48 chr6 7021920 7022046 -175393196 + MIR3 SINE MIR 63 185 -23 200 59 29 0 chr6 7023040 7023074 -175392168 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 211 277 31 0 chr6 7024368 7024433 -175390809 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 7024594 7024874 -175390368 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7024874 7025161 -175390081 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7025161 7025197 -175390045 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7025197 7025387 -175389855 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7025389 7025696 -175389546 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7025936 7025964 -175389278 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7026072 7026168 -175389074 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7026168 7026461 -175388781 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7026461 7027342 -175387900 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7027366 7027423 -175387819 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7027501 7027637 -175387605 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7027648 7027960 -175387282 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7028102 7028273 -175386969 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7028273 7028571 -175386671 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7028571 7028624 -175386618 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7028670 7028940 -175386302 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7028940 7029152 -175386090 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7030318 7030615 -175384627 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7031591 7031732 -175383510 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7031933 7032271 -175382971 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7032349 7032413 -175382829 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7032709 7032833 -175382409 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7033008 7033074 -175382168 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7033294 7033395 -175381847 + MER45A DNA AcHobo 79 178 0 825 124 0 0 chr6 7033945 7034074 -175381168 + (GGAA)n Simple_repeat Simple_repeat 1 129 0 302 198 47 0 chr6 7034078 7034184 -175381058 + GA-rich Low_complexity Low_complexity 5 115 0 21 36 0 0 chr6 7035032 7035060 -175380182 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7035484 7035507 -175379735 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7035782 7035983 -175379259 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7035985 7036338 -175378904 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7036765 7036843 -175378399 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7037133 7037388 -175377854 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7037803 7037922 -175377320 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7038009 7038171 -175377071 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7038376 7038550 -175376692 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7039083 7039164 -175376078 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7040880 7041013 -175374229 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7041268 7041867 -175373375 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7041867 7041931 -175373311 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7041931 7043272 -175371970 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7043345 7043608 -175371634 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7043878 7044164 -175371078 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7044164 7044513 -175370729 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7044625 7045009 -175370233 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7045395 7045825 -175369417 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7046185 7046497 -175368745 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7046701 7046917 -175368325 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7046923 7047036 -175368206 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7047055 7047265 -175367977 - AluSg/x SINE Alu -17 295 85 187 86 57 29 chr6 7047577 7047612 -175367630 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7047615 7047916 -175367326 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7048225 7048617 -175366625 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7048617 7048746 -175366496 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7048746 7048823 -175366419 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7049813 7050050 -175365192 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7050050 7050214 -175365028 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7050419 7050521 -175364721 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7050521 7050838 -175364404 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7050838 7050879 -175364363 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7050915 7050985 -175364257 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7051835 7052129 -175363113 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7052427 7052646 -175362596 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7052646 7052764 -175362478 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7052764 7052777 -175362465 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7052777 7053091 -175362151 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7053095 7053382 -175361860 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7053382 7053639 -175361603 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7053835 7053925 -175361317 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7054585 7054664 -175360578 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7054745 7054942 -175360300 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7056312 7056371 -175358871 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7056666 7056978 -175358264 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7057120 7057170 -175358072 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7057252 7057401 -175357841 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7057401 7057422 -175357820 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7057593 7057896 -175357346 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7058394 7058428 -175356814 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7058706 7058728 -175356514 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7059158 7059190 -175356052 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7059222 7059628 -175355614 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7059646 7060031 -175355211 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7060113 7060291 -175354951 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7060667 7060814 -175354428 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7061097 7061180 -175354062 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7061186 7061549 -175353693 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7061592 7061889 -175353353 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7061956 7062042 -175353200 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7062121 7062275 -175352967 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7062992 7063283 -175351959 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7063332 7063359 -175351883 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7063361 7063926 -175351316 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7063927 7064336 -175350906 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7064337 7064487 -175350755 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7064902 7065166 -175350076 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7065305 7065477 -175349765 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7065482 7065513 -175349729 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7065928 7066069 -175349173 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7066083 7066316 -175348926 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7066316 7066620 -175348622 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7066620 7066821 -175348421 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7067610 7067823 -175347419 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7067850 7068134 -175347108 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7068181 7068351 -175346891 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7068414 7068543 -175346699 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7068789 7068904 -175346338 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7068921 7068985 -175346257 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7069033 7069318 -175345924 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7070053 7070232 -175345010 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7071162 7071419 -175343823 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7071423 7071907 -175343335 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7072211 7072547 -175342695 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7072565 7072589 -175342653 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7072589 7072718 -175342524 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7072718 7072756 -175342486 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7072967 7073180 -175342062 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7073217 7073319 -175341923 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7073453 7073568 -175341674 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7073718 7074160 -175341082 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7074160 7074196 -175341046 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7074196 7074539 -175340703 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7074539 7075309 -175339933 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7075309 7075383 -175339859 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7075383 7075638 -175339604 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7075638 7075678 -175339564 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7075744 7076034 -175339208 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7076709 7076999 -175338243 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7077028 7077295 -175337947 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7077300 7077340 -175337902 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7077358 7077436 -175337806 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7077436 7077745 -175337497 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7077745 7078152 -175337090 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7078165 7079018 -175336224 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7079210 7079349 -175335893 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7079340 7079574 -175335668 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7079574 7079649 -175335593 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7079649 7079925 -175335317 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7079982 7080024 -175335218 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7080051 7080200 -175335042 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7080300 7080513 -175334729 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7080513 7080604 -175334638 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7080604 7080912 -175334330 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7080921 7081218 -175334024 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7081218 7081331 -175333911 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7081331 7081419 -175333823 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7082251 7082284 -175332958 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7082284 7082405 -175332837 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7082405 7082485 -175332757 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7085041 7085349 -175329893 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7085353 7085659 -175329583 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7085665 7085965 -175329277 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7085970 7086106 -175329136 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7086106 7086150 -175329092 + L1MB2 LINE L1 6097 6125 -46 2197 71 27 10 chr6 7086150 7086444 -175328798 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7086444 7086479 -175328763 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7086866 7087052 -175328190 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7087378 7087815 -175327427 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7088543 7088594 -175326648 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7088760 7088834 -175326408 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7090425 7090550 -175324692 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7090786 7090880 -175324362 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7090949 7091129 -175324113 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7091432 7091734 -175323508 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7091909 7092207 -175323035 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7092501 7092775 -175322467 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7092828 7092940 -175322302 - L1ME LINE L1 -307 5814 5706 3028 100 5 0 chr6 7093036 7093466 -175321776 + L1PA14 LINE L1 5728 6159 -2 261 302 84 20 chr6 7093503 7093705 -175321537 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7094208 7094699 -175320543 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7094878 7095129 -175320113 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7095498 7095783 -175319459 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7096176 7096270 -175318972 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7096320 7096620 -175318622 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7096621 7096649 -175318593 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7096650 7096932 -175318310 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7096937 7097160 -175318082 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7098474 7098663 -175316579 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7099008 7099135 -175316107 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7099139 7099409 -175315833 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7099591 7099675 -175315567 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7099966 7100081 -175315161 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7100153 7100890 -175314352 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7100890 7101186 -175314056 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7101186 7101296 -175313946 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7101481 7101786 -175313456 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7101786 7101975 -175313267 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7101975 7102245 -175312997 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7102245 7102421 -175312821 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7102592 7102730 -175312512 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7103080 7103220 -175312022 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7103342 7103488 -175311754 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7103719 7103752 -175311490 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7104703 7104879 -175310363 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7104917 7105086 -175310156 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7105573 7105871 -175309371 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7106593 7106689 -175308553 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7107416 7107712 -175307530 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7107738 7107969 -175307273 - MIR SINE MIR -10 252 43 524 153 0 0 chr6 7108998 7109083 -175306159 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7109086 7109312 -175305930 + MLT1A1 LTR MaLR 127 363 -2 314 268 14 0 chr6 7109427 7109498 -175305744 - L2 LINE L2 -4 3309 3238 318 246 144 57 chr6 7110381 7110612 -175304630 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7110751 7110775 -175304467 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1446 137 121 19 chr6 7110799 7111055 -175304187 - AluJo SINE Alu -30 282 1 918 169 0 34 chr6 7111632 7111868 -175303374 - AluJb SINE Alu 0 312 121 212 271 164 21 chr6 7112157 7112297 -175302945 - MIR SINE MIR -12 250 91 1283 215 41 13 chr6 7112307 7112623 -175302619 - MER58B DNA MER1_type -16 325 1 234 261 14 43 chr6 7112721 7112790 -175302452 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7113383 7113459 -175301783 + (TG)n Simple_repeat Simple_repeat 1 76 0 327 302 56 24 chr6 7113861 7113987 -175301255 + L2 LINE L2 3127 3256 -16 269 236 57 89 chr6 7114576 7114699 -175300543 - L2 LINE L2 -16 3297 3179 291 54 0 0 chr6 7116710 7116747 -175298495 + (TG)n Simple_repeat Simple_repeat 1 37 0 1857 192 79 8 chr6 7119267 7119636 -175295606 - MSTD LTR MaLR 0 396 2 270 241 176 0 chr6 7120531 7120639 -175294603 - L2 LINE L2 -645 2669 2543 396 263 168 34 chr6 7121000 7121174 -175294068 + MIR SINE MIR 5 224 -38 2203 129 0 0 chr6 7121174 7121477 -175293765 + AluSx SINE Alu 1 303 -9 396 263 168 34 chr6 7121477 7121522 -175293720 + MIR SINE MIR 224 262 0 21 0 0 0 chr6 7121539 7121560 -175293682 + AT_rich Low_complexity Low_complexity 1 21 0 202 275 132 33 chr6 7122688 7122779 -175292463 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7122810 7122850 -175292392 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 235 342 25 0 chr6 7122942 7123021 -175292221 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7123675 7123877 -175291365 - MIR SINE MIR -53 209 13 1118 147 12 0 chr6 7124170 7124340 -175290902 + AluJb SINE Alu 138 309 -3 2529 41 3 0 chr6 7125651 7125945 -175289297 - AluY SINE Alu -16 295 1 1732 180 3 10 chr6 7126065 7126376 -175288866 - AluJo SINE Alu -3 309 1 455 327 210 13 chr6 7126506 7126901 -175288341 - L3 LINE CR1 -20 1557 1085 806 216 72 19 chr6 7126915 7127123 -175288119 - MIR SINE MIR -10 252 34 754 237 17 6 chr6 7127139 7127312 -175287930 - MER5B DNA MER1_type -3 175 1 869 139 0 8 chr6 7127983 7128112 -175287130 - FLAM_C SINE Alu -5 128 1 818 157 6 0 chr6 7129290 7129449 -175285793 + (CA)n Simple_repeat Simple_repeat 2 161 0 288 115 0 0 chr6 7129449 7129501 -175285741 - MER4-int LTR ERV1 -5436 1162 1111 822 201 0 0 chr6 7129502 7129807 -175285435 + (CA)n Simple_repeat Simple_repeat 1 305 0 2211 142 0 0 chr6 7130482 7130793 -175284449 - AluSx SINE Alu -1 311 1 1950 176 3 0 chr6 7131326 7131633 -175283609 + AluJo SINE Alu 1 308 -4 374 272 191 0 chr6 7131854 7132001 -175283241 + MER5A DNA MER1_type 9 183 -6 1867 172 26 0 chr6 7132005 7132308 -175282934 + AluJb SINE Alu 1 311 -1 876 146 8 0 chr6 7132565 7132695 -175282547 + FLAM_C SINE Alu 1 131 -2 394 322 64 0 chr6 7133164 7133335 -175281907 + LTR33 LTR ERVL 2 183 -338 226 208 250 0 chr6 7133422 7133518 -175281724 + LTR33 LTR ERVL 327 446 -75 763 199 0 0 chr6 7133623 7133754 -175281488 - FLAM_A SINE Alu -2 131 1 2207 135 7 0 chr6 7134039 7134343 -175280899 - AluSx SINE Alu -6 306 1 2498 73 0 6 chr6 7134353 7134666 -175280576 - AluY SINE Alu 0 311 1 866 286 87 56 chr6 7134681 7134939 -175280303 + L1MB3 LINE L1 4674 4922 -1224 1969 128 0 35 chr6 7134939 7135252 -175279990 + AluSx SINE Alu 1 302 -10 866 286 87 56 chr6 7135252 7135532 -175279710 + L1MB3 LINE L1 4922 5229 -917 1891 157 26 13 chr6 7135572 7135878 -175279364 - 7SLRNA srpRNA srpRNA -6 314 5 438 282 70 78 chr6 7135897 7136053 -175279189 + L1MB3 LINE L1 5280 5436 -685 1699 137 98 0 chr6 7136053 7136333 -175278909 + AluSc SINE Alu 1 305 0 438 282 70 78 chr6 7136333 7136352 -175278890 + L1MB3 LINE L1 5436 5454 -667 2386 61 0 10 chr6 7136352 7136648 -175278594 + AluY SINE Alu 1 293 -18 438 282 70 78 chr6 7136648 7136856 -175278386 + L1MB3 LINE L1 5454 5662 -459 4402 160 22 66 chr6 7136894 7138158 -175277084 + pTR5 LTR ERV1 6 558 -156 1584 133 27 19 chr6 7138223 7138486 -175276756 + AluSx SINE Alu 10 274 -38 1484 182 16 0 chr6 7138600 7138858 -175276384 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7139856 7139892 -175275350 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2084 114 41 0 chr6 7140397 7140780 -175274462 + L1MB3 LINE L1 5658 6182 -1 821 144 8 0 chr6 7140786 7140904 -175274338 + FLAM_C SINE Alu 1 119 -24 2537 63 0 3 chr6 7140974 7141277 -175273965 - AluY SINE Alu -9 302 1 8956 45 9 3 chr6 7141331 7143216 -175272026 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7143230 7143266 -175271976 + AT_rich Low_complexity Low_complexity 1 36 0 214 253 121 81 chr6 7143856 7143955 -175271287 + MIR SINE MIR 49 151 -111 427 174 0 0 chr6 7143955 7144024 -175271218 + Tigger2 DNA MER2_type 1 69 -2649 * 2422 149 27 18 chr6 7144014 7144456 -175270786 + Tigger2 DNA MER2_type 2273 2718 0 1742 149 53 4 chr6 7144458 7144621 -175270621 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7144621 7144662 -175270580 + (TG)n Simple_repeat Simple_repeat 2 42 0 1742 149 53 4 chr6 7144662 7144779 -175270463 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7144820 7144870 -175270372 + (TA)n Simple_repeat Simple_repeat 2 52 0 354 264 85 98 chr6 7145702 7145802 -175269440 + MIR SINE MIR 7 107 -155 1845 151 4 0 chr6 7145802 7146073 -175269169 - AluJo SINE Alu -40 272 1 354 264 85 98 chr6 7146073 7146124 -175269118 + MIR SINE MIR 107 157 -105 2372 75 0 0 chr6 7146124 7146426 -175268816 + AluY SINE Alu 3 304 0 354 264 85 98 chr6 7146426 7146518 -175268724 + MIR SINE MIR 157 249 -13 414 273 72 57 chr6 7146567 7146761 -175268481 - MIR SINE MIR 0 262 66 277 258 0 16 chr6 7146972 7147034 -175268208 - L2 LINE L2 -109 3163 3103 1535 148 94 32 chr6 7147115 7147392 -175267850 - AluJb SINE Alu -16 296 3 2179 133 68 0 chr6 7147465 7147848 -175267394 - L1MA9 LINE L1 0 6312 5904 1282 169 110 19 chr6 7147848 7148133 -175267109 + L1 LINE L1 4655 4971 -1175 2318 164 25 70 chr6 7148133 7148616 -175266626 + LOR1b LTR ERV1 1 461 0 1282 169 110 19 chr6 7148616 7148638 -175266604 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7148801 7148821 -175266421 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3558 199 259 25 chr6 7149441 7150581 -175264661 + pTR5 LTR ERV1 1033 2438 0 505 277 36 42 chr6 7150584 7150750 -175264492 + MER5A DNA MER1_type 23 187 -2 1700 161 34 38 chr6 7151345 7151470 -175263772 + AluSx SINE Alu 1 125 -187 2255 105 10 10 chr6 7151470 7151776 -175263466 + AluSp SINE Alu 1 306 -7 1700 161 34 38 chr6 7151776 7151942 -175263300 + AluSx SINE Alu 125 291 -21 398 236 264 21 chr6 7151950 7152094 -175263148 + MER5A DNA MER1_type 11 189 0 272 265 174 10 chr6 7152220 7152318 -175262924 + MER5B DNA MER1_type 1 114 -64 1917 116 0 0 chr6 7152326 7152576 -175262666 - AluSx SINE Alu -14 298 49 3851 163 51 30 chr6 7152576 7153345 -175261897 - LTR1 LTR ERV1 0 785 1 358 137 0 7 chr6 7153345 7153414 -175261828 - Alu SINE Alu -250 52 1 240 243 142 95 chr6 7154457 7154526 -175260716 - L2 LINE L2 -2 3270 3206 2279 114 3 0 chr6 7154526 7154824 -175260418 + AluSg SINE Alu 1 299 -11 240 243 142 95 chr6 7154824 7154902 -175260340 - L2 LINE L2 -66 3206 3116 324 341 89 42 chr6 7155146 7155360 -175259882 - L1ME LINE L1 -516 5605 5382 211 314 43 0 chr6 7156056 7156126 -175259116 + MIR SINE MIR 58 130 -78 494 294 177 16 chr6 7156129 7156377 -175258865 - LTR16A LTR ERVL 0 450 163 362 289 70 16 chr6 7156442 7156570 -175258672 + MIR SINE MIR 128 262 0 243 250 0 33 chr6 7156618 7156678 -175258564 - L2 LINE L2 -1 3312 3255 249 290 121 0 chr6 7156771 7156895 -175258347 - L2 LINE L2 -351 2963 2825 1354 221 46 89 chr6 7156925 7157578 -175257664 + L1MC5 LINE L1 7300 7924 -37 1078 210 25 18 chr6 7157874 7158155 -175257087 + L1ME3 LINE L1 5648 5930 -232 447 243 128 7 chr6 7158178 7158326 -175256916 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7158336 7158368 -175256874 + AT_rich Low_complexity Low_complexity 1 32 0 1637 151 55 27 chr6 7158433 7158725 -175256517 - AluJb SINE Alu -8 304 5 234 307 0 0 chr6 7158752 7158827 -175256415 + MER94 DNA DNA 3 77 -57 903 148 0 0 chr6 7158827 7158955 -175256287 + FLAM_C SINE Alu 1 128 -5 386 320 11 55 chr6 7159065 7159246 -175255996 - MER5B DNA MER1_type 0 178 6 496 213 46 19 chr6 7159550 7159658 -175255584 - MER81 DNA DNA -1 113 3 2193 102 58 0 chr6 7160337 7160631 -175254611 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7160779 7161093 -175254149 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7161387 7161519 -175253723 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7161598 7161845 -175253397 + L1MB3 LINE L1 5263 5523 -641 1996 101 20 33 chr6 7162694 7163000 -175252242 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7163427 7163520 -175251722 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7164041 7164367 -175250875 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7164795 7165104 -175250138 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7165336 7165521 -175249721 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7165533 7165729 -175249513 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7166428 7166713 -175248529 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7169312 7169422 -175245820 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7169424 7169447 -175245795 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7169562 7169687 -175245555 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7170056 7170339 -175244903 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7170345 7170365 -175244877 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1065 169 56 28 chr6 7170832 7171045 -175244197 + MER20 DNA MER1_type 1 219 0 2403 63 0 0 chr6 7171226 7171525 -175243717 - AluY SINE Alu -12 299 1 2180 100 0 0 chr6 7172022 7172322 -175242920 + AluSx SINE Alu 1 300 -12 1700 157 29 0 chr6 7173124 7173398 -175241844 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7173599 7173886 -175241356 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7174241 7174572 -175240670 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7174767 7175397 -175239845 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7176268 7176371 -175238871 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7176594 7176981 -175238261 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7177015 7177199 -175238043 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7177622 7177939 -175237303 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7177965 7178041 -175237201 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7178724 7178827 -175236415 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7179860 7180137 -175235105 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7180139 7180300 -175234942 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7180300 7180397 -175234845 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7180410 7180715 -175234527 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7180762 7181048 -175234194 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7181048 7181100 -175234142 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7181134 7181242 -175234000 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7181365 7181413 -175233829 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7181743 7182237 -175233005 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7182363 7182417 -175232825 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7182797 7182916 -175232326 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7182921 7183014 -175232228 - MER45 DNA AcHobo -1474 107 1 560 322 70 13 chr6 7183042 7183272 -175231970 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7184433 7184564 -175230678 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7185227 7185526 -175229716 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7185555 7185846 -175229396 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7185910 7185933 -175229309 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7185935 7186208 -175229034 - AluSg SINE Alu -14 296 1 382 252 91 99 chr6 7186211 7186563 -175228679 + L1M4 LINE L1 3068 3402 -2744 1624 167 10 23 chr6 7186587 7186867 -175228375 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7186867 7186891 -175228351 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7186891 7186915 -175228327 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7186925 7187262 -175227980 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7187499 7187792 -175227450 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7187804 7188000 -175227242 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7188002 7188060 -175227182 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7188060 7188195 -175227047 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7188195 7188445 -175226797 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7188445 7188600 -175226642 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7188600 7188634 -175226608 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7188641 7188945 -175226297 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7188946 7189044 -175226198 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7189046 7189357 -175225885 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7189440 7189643 -175225599 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7189644 7189956 -175225286 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7189968 7190101 -175225141 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7190098 7190211 -175225031 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7190258 7190568 -175224674 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7190695 7190881 -175224361 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7190901 7190941 -175224301 + (TG)n Simple_repeat Simple_repeat 1 40 0 1264 164 4 13 chr6 7191215 7191440 -175223802 + AluJo SINE Alu 1 223 -89 229 287 23 0 chr6 7191575 7191662 -175223580 - L1MC4 LINE L1 -1340 6702 6614 302 309 24 0 chr6 7191675 7191759 -175223483 - L1MC4 LINE L1 -1342 6700 6615 1663 155 7 4 chr6 7192881 7193159 -175222083 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7193159 7193183 -175222059 + AT_rich Low_complexity Low_complexity 1 24 0 3164 62 5 0 chr6 7193468 7193869 -175221373 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7194135 7194157 -175221085 + AT_rich Low_complexity Low_complexity 1 22 0 2051 110 7 0 chr6 7194395 7194695 -175220547 + AluY SINE Alu 1 302 -9 2316 60 0 23 chr6 7195299 7195600 -175219642 + AluY SINE Alu 1 294 -17 182 318 143 0 chr6 7196034 7196097 -175219145 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7196162 7196272 -175218970 + AT_rich Low_complexity Low_complexity 1 110 0 1611 156 4 7 chr6 7196293 7196568 -175218674 - AluJo SINE Alu -18 294 21 2291 100 3 0 chr6 7196626 7196935 -175218307 - AluSx SINE Alu -2 310 1 608 202 0 0 chr6 7197302 7197401 -175217841 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7197720 7197936 -175217306 + MIR SINE MIR 46 261 -1 1978 118 37 0 chr6 7197941 7198238 -175217004 - AluSx SINE Alu -4 308 1 602 328 172 12 chr6 7198279 7198867 -175216375 + L2 LINE L2 1965 2646 -668 867 113 0 0 chr6 7199293 7199408 -175215834 + AluSq/x SINE Alu 10 124 -189 3749 156 30 66 chr6 7199409 7199916 -175215326 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7199916 7200199 -175215043 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7200199 7200291 -175214951 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7200291 7200585 -175214657 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7200585 7200791 -175214451 + L1MB8 LINE L1 5926 6085 -93 207 0 0 0 chr6 7201022 7201045 -175214197 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7201059 7201176 -175214066 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7201331 7201698 -175213544 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7201700 7201871 -175213371 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7202080 7202156 -175213086 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7202173 7202225 -175213017 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7202239 7202536 -175212706 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7202538 7202604 -175212638 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7202760 7202910 -175212332 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7202910 7203289 -175211953 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7203289 7203308 -175211934 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7203940 7204061 -175211181 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7204070 7204380 -175210862 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7204380 7204513 -175210729 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7204513 7204554 -175210688 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7204584 7204644 -175210598 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7205434 7205618 -175209624 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7205619 7205921 -175209321 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7205925 7206112 -175209130 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7206117 7206194 -175209048 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7206811 7207091 -175208151 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7207097 7207150 -175208092 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7207580 7207686 -175207556 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7207686 7208092 -175207150 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7208092 7208217 -175207025 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7208230 7208373 -175206869 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7208375 7208687 -175206555 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7208687 7208898 -175206344 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7209158 7209283 -175205959 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7210456 7210483 -175204759 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7210547 7210693 -175204549 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7211530 7211664 -175203578 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7211839 7211928 -175203314 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7211928 7212097 -175203145 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7212097 7212148 -175203094 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7212184 7212288 -175202954 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7212288 7212738 -175202504 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7212813 7213105 -175202137 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7213569 7213855 -175201387 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7213856 7214178 -175201064 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7214206 7214517 -175200725 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7214517 7214753 -175200489 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7214845 7214945 -175200297 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7216106 7216362 -175198880 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7216382 7216696 -175198546 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7216711 7216780 -175198462 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7216790 7216891 -175198351 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7217095 7217124 -175198118 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7217495 7217794 -175197448 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7218377 7218721 -175196521 + AluJo SINE Alu 1 302 0 204 188 0 0 chr6 7218729 7218761 -175196481 + (TG)n Simple_repeat Simple_repeat 1 32 0 1433 158 0 0 chr6 7218922 7219143 -175196099 - AluJo SINE Alu -91 221 1 622 248 90 85 chr6 7219143 7219579 -175195663 + MLT1E1 LTR MaLR 11 518 -136 353 141 3 7 chr6 7219579 7219636 -175195606 + Alu SINE Alu 244 285 -17 2172 105 0 10 chr6 7219636 7219942 -175195300 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7219942 7219957 -175195285 + Alu SINE Alu 285 299 -3 846 143 0 0 chr6 7219957 7220083 -175195159 + FLAM_C SINE Alu 5 130 -3 712 235 34 0 chr6 7220115 7220264 -175194978 + MLT1E1 LTR MaLR 494 647 -7 461 261 71 69 chr6 7220281 7220573 -175194669 - L1MB2 LINE L1 -449 5672 5378 342 67 0 0 chr6 7220573 7220618 -175194624 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7220618 7220646 -175194596 - L1MB2 LINE L1 -743 5378 5352 1844 110 0 0 chr6 7220653 7220916 -175194326 - AluSq SINE Alu -8 305 43 2164 110 3 0 chr6 7220945 7221253 -175193989 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7221339 7221524 -175193718 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7221894 7222135 -175193107 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7222269 7222420 -175192822 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7222470 7222600 -175192642 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7222621 7222912 -175192330 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7223050 7226287 -175188955 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7226287 7227677 -175187565 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7227855 7228009 -175187233 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7228659 7228827 -175186415 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7228853 7229165 -175186077 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7229935 7230231 -175185011 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7230807 7230836 -175184406 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7230951 7230973 -175184269 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7231104 7231401 -175183841 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7231440 7231724 -175183518 - AluSx SINE Alu -17 295 15 805 185 0 0 chr6 7231784 7231914 -175183328 + AluJo SINE Alu 5 134 -178 587 209 124 0 chr6 7231981 7232110 -175183132 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7232127 7232234 -175183008 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7232235 7232314 -175182928 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7233117 7233412 -175181830 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7233525 7233564 -175181678 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7233592 7233629 -175181613 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7233629 7234125 -175181117 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7234125 7235283 -175179959 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7235307 7235604 -175179638 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7235642 7235951 -175179291 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7236359 7236508 -175178734 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7236478 7236535 -175178707 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7236612 7236638 -175178604 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7236641 7236726 -175178516 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7236848 7237148 -175178094 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7237148 7237170 -175178072 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7237170 7237459 -175177783 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7237492 7237547 -175177695 + L2 LINE L2 3216 3272 0 264 272 88 40 chr6 7238584 7238709 -175176533 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7239709 7239742 -175175500 + (CA)n Simple_repeat Simple_repeat 2 34 0 2007 98 23 10 chr6 7239797 7240103 -175175139 + AluSx SINE Alu 2 311 -1 880 104 0 0 chr6 7240470 7240585 -175174657 + FLAM_C SINE Alu 4 118 -15 2171 100 3 0 chr6 7240874 7241175 -175174067 + AluSx SINE Alu 1 302 -10 638 246 172 15 chr6 7241825 7242028 -175173214 + MIR SINE MIR 28 262 0 207 0 0 0 chr6 7242201 7242224 -175173018 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7242616 7242645 -175172597 + (GA)n Simple_repeat Simple_repeat 2 30 0 1109 129 0 12 chr6 7242753 7242923 -175172319 + AluSg/x SINE Alu 121 288 -24 700 189 115 80 chr6 7243854 7244166 -175171076 - L1MC5 LINE L1 -30 7931 7609 425 316 32 48 chr6 7244439 7244626 -175170616 + MIR3 SINE MIR 21 204 -4 333 344 55 12 chr6 7244775 7244938 -175170304 + L2 LINE L2 3144 3313 0 227 269 13 77 chr6 7244947 7245025 -175170217 + MIR SINE MIR 134 206 -56 1604 179 10 23 chr6 7245151 7245459 -175169783 - AluJo SINE Alu -8 304 1 2219 94 0 3 chr6 7245510 7245809 -175169433 - AluSp SINE Alu -15 298 1 342 200 19 150 chr6 7246324 7246484 -175168758 - MER103 DNA DNA -11 155 17 355 133 51 43 chr6 7246486 7246612 -175168630 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7247890 7247911 -175167331 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7248035 7248090 -175167152 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7248632 7248660 -175166582 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7248773 7248799 -175166443 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2212 98 0 0 chr6 7250136 7250442 -175164800 + AluY SINE Alu 1 306 -5 740 161 0 58 chr6 7250490 7250627 -175164615 - FLAM_C SINE Alu -13 130 2 335 137 0 0 chr6 7251433 7251484 -175163758 - FAM SINE Alu -10 165 115 2308 94 3 0 chr6 7251484 7251792 -175163450 - AluSp SINE Alu -4 309 1 2034 123 0 7 chr6 7251834 7252142 -175163100 + AluSx SINE Alu 1 306 -6 2357 61 0 0 chr6 7252191 7252487 -175162755 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7252773 7252810 -175162432 + GA-rich Low_complexity Low_complexity 2 38 0 636 174 41 8 chr6 7253678 7253799 -175161443 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7253799 7253878 -175161364 + AT_rich Low_complexity Low_complexity 1 79 0 239 345 17 17 chr6 7254004 7254063 -175161179 + MER5A DNA MER1_type 68 126 -63 2226 92 0 7 chr6 7254063 7254366 -175160876 - AluSc SINE Alu -8 301 1 239 345 17 17 chr6 7254366 7254425 -175160817 + MER5A DNA MER1_type 125 186 -3 601 144 0 0 chr6 7255484 7255596 -175159646 + AluSg/x SINE Alu 195 306 0 501 103 4 0 chr6 7255596 7255673 -175159569 - L1MB2 LINE L1 -32 6136 6058 2052 114 0 0 chr6 7255941 7256231 -175159011 + AluSg SINE Alu 1 290 -20 242 208 0 0 chr6 7256231 7256279 -175158963 + AluJ/monomer SINE Alu 1 48 -252 2072 131 0 0 chr6 7256320 7256625 -175158617 - AluSx SINE Alu -7 305 1 1940 118 0 14 chr6 7257478 7257805 -175157437 - AluSx SINE Alu 0 323 1 767 155 0 0 chr6 7258175 7258291 -175156951 + FLAM_C SINE Alu 1 116 -17 352 171 0 85 chr6 7259394 7259476 -175155766 + Charlie7 DNA MER1_type 37 111 -2501 816 170 61 109 chr6 7259479 7259547 -175155695 - L1MB4 LINE L1 -2 6178 6108 2270 85 0 3 chr6 7259547 7259842 -175155400 - AluSq SINE Alu -19 294 1 816 170 61 109 chr6 7259842 7260020 -175155222 - L1MB4 LINE L1 -72 6108 5944 761 183 0 0 chr6 7260033 7260148 -175155094 - AluSq/x SINE Alu -197 116 2 1421 135 35 45 chr6 7260149 7260437 -175154805 - L1MB4 LINE L1 -564 5610 5326 1865 150 3 0 chr6 7260441 7260748 -175154494 + AluSx SINE Alu 1 308 -4 189 107 0 0 chr6 7260748 7260776 -175154466 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 254 222 30 12 chr6 7261146 7261221 -175154021 + AluS SINE Alu 1 61 -240 1209 117 15 5 chr6 7261322 7261527 -175153715 + AluY SINE Alu 82 288 -23 2417 55 0 0 chr6 7261645 7261955 -175153287 - AluY SINE Alu -1 310 1 2407 71 0 7 chr6 7262028 7262337 -175152905 - AluSg SINE Alu -3 307 1 2291 71 0 16 chr6 7262522 7262833 -175152409 + AluY SINE Alu 1 306 -5 2245 92 0 3 chr6 7262990 7263295 -175151947 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7263335 7263352 -175151890 + AT_rich Low_complexity Low_complexity 1 17 -54 2116 104 0 0 chr6 7263352 7263639 -175151603 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7263639 7263693 -175151549 + AT_rich Low_complexity Low_complexity 17 71 0 1653 129 10 34 chr6 7263773 7264067 -175151175 - AluJo SINE Alu -3 309 23 1670 129 86 4 chr6 7264086 7264364 -175150878 - AluSq SINE Alu -12 301 1 896 158 0 0 chr6 7264902 7265035 -175150207 + FLAM_C SINE Alu 1 133 0 1994 160 0 0 chr6 7265331 7265638 -175149604 - AluJb SINE Alu -5 307 1 1951 120 6 19 chr6 7265658 7265974 -175149268 - AluSq SINE Alu 0 313 2 916 294 59 15 chr6 7265984 7266392 -175148850 - L1ME3A LINE L1 -220 5950 5525 2198 109 0 0 chr6 7266398 7266702 -175148540 - AluSx SINE Alu -8 304 1 548 162 45 78 chr6 7266730 7266794 -175148448 - L1MA9 LINE L1 0 6312 6247 2036 134 0 0 chr6 7266794 7267099 -175148143 + AluJb SINE Alu 1 305 -7 548 162 45 78 chr6 7267099 7267188 -175148054 - L1MA9 LINE L1 -65 6247 6164 1493 205 7 13 chr6 7267206 7267504 -175147738 + AluJo SINE Alu 1 296 -16 632 242 85 42 chr6 7267508 7267768 -175147474 - L1ME3A LINE L1 -633 5531 5261 254 159 14 43 chr6 7267830 7267899 -175147343 - L1ME3A LINE L1 -896 5250 5184 2312 85 3 0 chr6 7267950 7268256 -175146986 - AluSx SINE Alu -5 307 1 705 285 79 65 chr6 7268256 7268888 -175146354 - L1ME3A LINE L1 -976 5170 4530 676 210 46 149 chr6 7268898 7269160 -175146082 + MIR SINE MIR 2 236 -26 2138 116 6 61 chr6 7269260 7269606 -175145636 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7269711 7269743 -175145499 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7269888 7270201 -175145041 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7270580 7270649 -175144593 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7271133 7271169 -175144073 + (T)n Simple_repeat Simple_repeat 1 36 0 2182 88 3 3 chr6 7271404 7271698 -175143544 - AluSc SINE Alu -15 294 1 1004 103 0 0 chr6 7271698 7271834 -175143408 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7271876 7271993 -175143249 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7272001 7272049 -175143193 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 482 210 259 19 chr6 7272049 7272206 -175143036 - MIR SINE MIR -5 257 62 382 283 38 38 chr6 7272547 7272706 -175142536 - MIR SINE MIR -25 237 79 2206 93 0 0 chr6 7273203 7273494 -175141748 - AluY SINE Alu -20 291 1 342 306 146 7 chr6 7273521 7273665 -175141577 - MIR3 SINE MIR -15 193 30 740 121 129 0 chr6 7274334 7274450 -175140792 + FLAM_A SINE Alu 1 131 -2 535 136 0 0 chr6 7274507 7274595 -175140647 - MER2 DNA MER2_type -135 210 123 909 141 0 15 chr6 7274596 7274731 -175140511 + FLAM_C SINE Alu 1 133 0 731 212 8 0 chr6 7274777 7274909 -175140333 - MER2 DNA MER2_type -210 135 3 320 236 22 0 chr6 7275001 7275090 -175140152 - L1ME3A LINE L1 -1 6169 6079 464 233 117 31 chr6 7275093 7275256 -175139986 + MIR SINE MIR 25 201 -61 2459 58 0 7 chr6 7275324 7275633 -175139609 + AluY SINE Alu 2 308 -3 775 148 0 16 chr6 7275843 7275965 -175139277 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7275986 7276139 -175139103 + GA-rich Low_complexity Low_complexity 3 153 0 2157 115 0 0 chr6 7276175 7276480 -175138762 + AluSx SINE Alu 1 305 -7 1848 122 29 0 chr6 7276773 7277052 -175138190 - AluSx SINE Alu -25 287 1 1323 101 0 0 chr6 7277057 7277255 -175137987 - L1MA5 LINE L1 -2 6298 6101 310 187 67 13 chr6 7277266 7277341 -175137901 - L1MA5A LINE L1 -172 6125 6047 2221 88 13 0 chr6 7277810 7278118 -175137124 + AluSx SINE Alu 1 312 0 1176 177 72 16 chr6 7278322 7278571 -175136671 + AluJo SINE Alu 33 295 -17 2258 97 3 0 chr6 7278645 7278956 -175136286 + AluSx SINE Alu 1 312 0 435 108 14 14 chr6 7278956 7279030 -175136212 + Charlie1 DNA MER1_type 2688 2761 0 242 347 42 28 chr6 7279190 7279334 -175135908 - L2 LINE L2 -18 3295 3150 481 324 77 6 chr6 7279394 7279564 -175135678 - MIR SINE MIR -26 236 55 2080 111 10 3 chr6 7280347 7280653 -175134589 - AluSx SINE Alu -4 308 1 2207 86 0 0 chr6 7280953 7281245 -175133997 + AluY SINE Alu 1 292 -19 2182 98 0 0 chr6 7281258 7281553 -175133689 + AluSx SINE Alu 3 297 -15 309 211 178 0 chr6 7282192 7282282 -175132960 + MIR SINE MIR 87 192 -70 2266 73 10 0 chr6 7282427 7282727 -175132515 + AluSp SINE Alu 1 303 -10 340 249 24 133 chr6 7283191 7283356 -175131886 + MIR3 SINE MIR 33 179 -29 4352 139 16 22 chr6 7285035 7285803 -175129439 - L1MB3 LINE L1 -7 6176 5414 439 281 62 65 chr6 7285807 7286113 -175129129 - L1M4 LINE L1 -1381 4765 4461 380 253 0 12 chr6 7286267 7286350 -175128892 + MIR SINE MIR 20 101 -161 283 334 30 30 chr6 7286431 7286730 -175128512 - L1M4 LINE L1 -1898 4248 3950 1290 117 20 101 chr6 7287222 7287386 -175127856 + MER30 DNA MER1_type 3 143 -87 2150 74 7 3 chr6 7287386 7287704 -175127538 - AluSx SINE Alu 0 319 1 1290 117 20 101 chr6 7287704 7287786 -175127456 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7287834 7287855 -175127387 + AT_rich Low_complexity Low_complexity 1 21 0 892 131 0 21 chr6 7287884 7288029 -175127213 + AluJo SINE Alu 1 142 -170 2123 103 0 19 chr6 7288032 7288344 -175126898 + AluSx SINE Alu 6 311 -1 259 249 83 55 chr6 7288350 7288567 -175126675 - L1ME LINE L1 -218 5903 5681 191 88 29 0 chr6 7288641 7288675 -175126567 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1782 80 13 0 chr6 7288685 7288924 -175126318 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7288939 7289249 -175125993 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7289263 7289328 -175125914 + Alu SINE Alu 1 47 -254 273 236 149 63 chr6 7289331 7289505 -175125737 - L1ME LINE L1 -656 5465 5277 524 285 69 69 chr6 7289506 7289655 -175125587 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7289655 7289953 -175125289 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7289956 7290240 -175125002 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7290240 7290332 -175124910 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7290371 7290552 -175124690 - L1ME LINE L1 -912 5234 5063 2334 83 0 10 chr6 7290552 7290865 -175124377 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7290865 7290928 -175124314 - L1ME LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7290928 7291091 -175124151 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7291091 7291132 -175124110 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7291132 7291392 -175123850 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7291392 7291520 -175123722 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7291529 7291839 -175123403 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7291839 7292008 -175123234 - L1ME LINE L1 -1149 4997 4791 379 323 65 8 chr6 7292192 7292316 -175122926 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7292429 7292742 -175122500 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7292841 7293083 -175122159 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7293090 7293111 -175122131 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7293119 7293405 -175121837 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7293429 7293477 -175121765 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7293478 7293585 -175121657 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7293599 7293679 -175121563 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7293704 7294003 -175121239 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7294081 7294225 -175121017 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7294225 7294539 -175120703 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7294539 7294654 -175120588 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7294654 7294910 -175120332 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7294910 7294931 -175120311 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7294931 7295023 -175120219 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7296023 7296150 -175119092 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7296181 7296399 -175118843 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7296733 7296912 -175118330 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7296987 7297222 -175118020 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7297421 7297628 -175117614 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7298396 7298630 -175116612 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7299240 7299521 -175115721 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7299521 7299749 -175115493 + AluSg/x SINE Alu 82 311 -1 2159 118 3 0 chr6 7299780 7300086 -175115156 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7300122 7300144 -175115098 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7300199 7300260 -175114982 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7300260 7300422 -175114820 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7300567 7300690 -175114552 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7300705 7300858 -175114384 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7300862 7301093 -175114149 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7301093 7301378 -175113864 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7301433 7301522 -175113720 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7301537 7302160 -175113082 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7302272 7302578 -175112664 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7303481 7303503 -175111739 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7304602 7304869 -175110373 - AluSq SINE Alu -27 286 27 291 28 0 0 chr6 7305141 7305177 -175110065 + (CCG)n Simple_repeat Simple_repeat 3 38 0 204 263 0 0 chr6 7305266 7305323 -175109919 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7305784 7305817 -175109425 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7306270 7306320 -175108922 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7306551 7306586 -175108656 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7306752 7306774 -175108468 + GC_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr6 7307947 7307971 -175107271 + (TG)n Simple_repeat Simple_repeat 2 25 0 231 244 0 0 chr6 7308614 7308659 -175106583 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7309595 7309616 -175105626 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7311339 7311370 -175103872 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7311608 7311804 -175103438 - AluSg/x SINE Alu -29 281 84 662 181 132 64 chr6 7311860 7312064 -175103178 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7313155 7313751 -175101491 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7314863 7315172 -175100070 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7315205 7315350 -175099892 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7315434 7315466 -175099776 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7315589 7315888 -175099354 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7316273 7316416 -175098826 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7316577 7316831 -175098411 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7316926 7317091 -175098151 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7317636 7317935 -175097307 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7318143 7318281 -175096961 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7318281 7318591 -175096651 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7318591 7318727 -175096515 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7319126 7319257 -175095985 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7319727 7320033 -175095209 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7320630 7320929 -175094313 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7321078 7321378 -175093864 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7322168 7322397 -175092845 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7323450 7323767 -175091475 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7323787 7324030 -175091212 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7325935 7326042 -175089200 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7326154 7326445 -175088797 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7328084 7328382 -175086860 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7328397 7328693 -175086549 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7328728 7328847 -175086395 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7328905 7329081 -175086161 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7329146 7329228 -175086014 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7329331 7329519 -175085723 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7329519 7329822 -175085420 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7329822 7329933 -175085309 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7329954 7330039 -175085203 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7330567 7330678 -175084564 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7330908 7331025 -175084217 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7331025 7331053 -175084189 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7331239 7331501 -175083741 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7333905 7334042 -175081200 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7338685 7338717 -175076525 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7339410 7339702 -175075540 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7341307 7341338 -175073904 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7341680 7341819 -175073423 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7343434 7343462 -175071780 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7343568 7343596 -175071646 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7345856 7345964 -175069278 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7346398 7346690 -175068552 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7346933 7346973 -175068269 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7347154 7347456 -175067786 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7350573 7350594 -175064648 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7350700 7350721 -175064521 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7350881 7350912 -175064330 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7351190 7351544 -175063698 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7351680 7351854 -175063388 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7351974 7352228 -175063014 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7352767 7353078 -175062164 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7353247 7353269 -175061973 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7354617 7354915 -175060327 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7354915 7354942 -175060300 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7354956 7355246 -175059996 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7357481 7357526 -175057716 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7357577 7357676 -175057566 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7357692 7357751 -175057491 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7357772 7357814 -175057428 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7357987 7358145 -175057097 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7358145 7358451 -175056791 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7358451 7358598 -175056644 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7360287 7360324 -175054918 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7360328 7360476 -175054766 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7360848 7361160 -175054082 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7364771 7364792 -175050450 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7364817 7365098 -175050144 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7365328 7365384 -175049858 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7365446 7365744 -175049498 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7365863 7366277 -175048965 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7366283 7366469 -175048773 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7368335 7368488 -175046754 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7368990 7369122 -175046120 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7369415 7369712 -175045530 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7369884 7370014 -175045228 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7370742 7370989 -175044253 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7371002 7371281 -175043961 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7371948 7371980 -175043262 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7372070 7372376 -175042866 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7372376 7372397 -175042845 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7373383 7373676 -175041566 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7374402 7374710 -175040532 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7375009 7375180 -175040062 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7375180 7375490 -175039752 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7375490 7375627 -175039615 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7375627 7375664 -175039578 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7376742 7376866 -175038376 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7377264 7377292 -175037950 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7377292 7377417 -175037825 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7380512 7380606 -175034636 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7380661 7380710 -175034532 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7380842 7380941 -175034301 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7381537 7381667 -175033575 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7381730 7381761 -175033481 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7381874 7381901 -175033341 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7381902 7382020 -175033222 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7382755 7383053 -175032189 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7383277 7383512 -175031730 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7383780 7383941 -175031301 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7384608 7384772 -175030470 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7385008 7385058 -175030184 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7385058 7385157 -175030085 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7385234 7385264 -175029978 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7385341 7385668 -175029574 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7385883 7385927 -175029315 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7385927 7386114 -175029128 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7387807 7387937 -175027305 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7387982 7388095 -175027147 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7388899 7388958 -175026284 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7388944 7389211 -175026031 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7389214 7389846 -175025396 - L1MB8 LINE L1 -1573 4573 3860 1955 132 0 0 chr6 7389855 7390144 -175025098 - AluSx SINE Alu -18 294 6 2609 207 36 69 chr6 7390150 7391047 -175024195 - L1MB8 LINE L1 -2690 3456 2590 275 273 322 0 chr6 7391071 7391192 -175024050 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7391192 7391242 -175024000 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7391242 7391277 -175023965 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7391277 7391563 -175023679 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7391894 7391915 -175023327 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7391924 7392192 -175023050 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7392530 7392714 -175022528 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7393855 7393903 -175021339 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7394352 7394389 -175020853 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7395089 7395330 -175019912 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7396878 7396999 -175018243 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7397314 7397499 -175017743 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7397836 7397882 -175017360 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7397887 7397938 -175017304 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7397939 7398225 -175017017 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7400197 7400436 -175014806 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7400930 7401027 -175014215 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7402804 7402972 -175012270 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7403005 7403096 -175012146 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7404157 7404772 -175010470 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7404832 7405088 -175010154 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7405093 7405737 -175009505 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7406544 7406699 -175008543 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7407220 7407326 -175007916 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7407325 7407393 -175007849 + AluS SINE Alu 227 294 -18 * 251 233 62 144 chr6 7408850 7408961 -175006281 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7408961 7409048 -175006194 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7409048 7409082 -175006160 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7410664 7410797 -175004445 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7410807 7411123 -175004119 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7412991 7413014 -175002228 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7413016 7413296 -175001946 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7413296 7413529 -175001713 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7413755 7413836 -175001406 - L2 LINE L2 -4 3268 3185 437 90 164 0 chr6 7464992 7465059 -174950183 + AluSc SINE Alu 217 294 -15 232 278 156 0 chr6 7465061 7465151 -174950091 + MIR SINE MIR 145 248 -14 2425 81 3 13 chr6 7465371 7465680 -174949562 - AluSx SINE Alu -6 306 1 889 174 19 0 chr6 7465743 7465898 -174949344 - FRAM SINE Alu -8 158 1 1251 149 0 26 chr6 7465906 7466138 -174949104 - AluSg/x SINE Alu 0 317 91 759 155 0 0 chr6 7466391 7466507 -174948735 + FLAM_C SINE Alu 1 116 -17 676 142 0 9 chr6 7467461 7467567 -174947675 - FLAM_C SINE Alu -38 105 1 22 0 0 0 chr6 7467596 7467618 -174947624 + AT_rich Low_complexity Low_complexity 1 22 0 1291 122 20 93 chr6 7467665 7467747 -174947495 - MER30 DNA MER1_type 0 230 144 2289 76 7 3 chr6 7467747 7468063 -174947179 + AluSx SINE Alu 1 312 0 1291 122 20 93 chr6 7468063 7468226 -174947016 - MER30 DNA MER1_type -86 144 3 766 115 26 0 chr6 7468795 7468908 -174946334 + AluSg/x SINE Alu 170 285 -25 2258 118 0 0 chr6 7469203 7469508 -174945734 - AluSx SINE Alu -7 305 1 462 203 13 26 chr6 7469544 7469697 -174945545 + CT-rich Low_complexity Low_complexity 3 153 0 770 148 0 16 chr6 7469718 7469840 -174945402 - FLAM_C SINE Alu -11 122 3 531 118 0 0 chr6 7469980 7470065 -174945177 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 0 0 0 chr6 7470122 7470144 -174945098 + AT_rich Low_complexity Low_complexity 1 22 0 1536 166 88 3 chr6 7470162 7470446 -174944796 + AluJb SINE Alu 1 308 -4 315 292 84 52 chr6 7470450 7470796 -174944446 + L1M4 LINE L1 3286 3642 -2504 185 150 0 25 chr6 7470835 7470875 -174944367 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 1427 153 0 0 chr6 7471069 7471272 -174943970 + AluJb SINE Alu 105 307 -5 893 158 0 0 chr6 7471568 7471701 -174943541 - FLAM_C SINE Alu 0 133 1 402 157 253 0 chr6 7472240 7472323 -174942919 + AluY SINE Alu 2 105 -206 4369 141 16 18 chr6 7472531 7473296 -174941946 + L1MB3 LINE L1 5414 6176 -7 1818 122 4 0 chr6 7474120 7474366 -174940876 - AluSq SINE Alu -66 247 1 2023 118 0 17 chr6 7475217 7475549 -174939693 - AluSx SINE Alu 0 327 1 585 258 115 106 chr6 7475792 7476114 -174939128 + MLT1E1 LTR MaLR 194 518 -136 353 141 3 7 chr6 7476114 7476171 -174939071 + Alu SINE Alu 244 285 -17 2302 105 0 10 chr6 7476171 7476477 -174938765 + AluSx SINE Alu 1 303 -9 353 141 3 7 chr6 7476477 7476492 -174938750 + Alu SINE Alu 285 299 -3 841 143 0 0 chr6 7476492 7476618 -174938624 + FLAM_C SINE Alu 5 130 -3 716 228 34 0 chr6 7476650 7476799 -174938443 + MLT1E1 LTR MaLR 494 647 -7 483 281 89 49 chr6 7476816 7477102 -174938140 - L1ME LINE L1 -449 5672 5372 564 56 0 0 chr6 7477102 7477174 -174938068 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 483 281 89 49 chr6 7477174 7477197 -174938045 - L1ME LINE L1 -749 5372 5351 1445 131 106 17 chr6 7477359 7477458 -174937784 + AluJb SINE Alu 38 127 -185 2119 129 0 13 chr6 7477458 7477768 -174937474 + AluSx SINE Alu 1 306 -6 1445 131 106 17 chr6 7477768 7477905 -174937337 + AluJb SINE Alu 127 295 -17 1832 164 0 10 chr6 7478113 7478412 -174936830 - AluJb SINE Alu -16 296 1 1750 175 34 0 chr6 7479066 7479357 -174935885 + AluJb SINE Alu 3 303 -9 207 69 0 0 chr6 7479933 7479962 -174935280 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr6 7480077 7480097 -174935145 + (CA)n Simple_repeat Simple_repeat 2 21 0 2213 108 10 3 chr6 7480511 7480816 -174934426 + AluSx SINE Alu 1 307 -5 410 324 77 6 chr6 7481601 7481771 -174933471 + MIR SINE MIR 55 236 -26 207 352 46 19 chr6 7481867 7481975 -174933267 + L2 LINE L2 3185 3295 -18 428 127 13 13 chr6 7482135 7482206 -174933036 - Charlie1 DNA MER1_type 0 2761 2688 2358 95 3 0 chr6 7482206 7482511 -174932731 - AluSx SINE Alu -6 306 1 1266 177 72 16 chr6 7482585 7482834 -174932408 - AluJo SINE Alu -17 295 33 928 106 8 0 chr6 7483038 7483170 -174932072 - AluSg/x SINE Alu 0 312 180 208 303 34 51 chr6 7483343 7483577 -174931665 + L2 LINE L2 2810 3039 -233 2062 89 78 0 chr6 7484187 7484468 -174930774 + AluSp SINE Alu 1 303 -10 1631 119 4 0 chr6 7484468 7484693 -174930549 + AluSg/x SINE Alu 80 306 -4 2288 118 3 0 chr6 7484727 7485033 -174930209 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7485069 7485091 -174930151 + AT_rich Low_complexity Low_complexity 1 22 0 342 178 42 17 chr6 7485157 7485275 -174929967 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 371 74 49 0 chr6 7485285 7485366 -174929876 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2302 96 0 0 chr6 7485942 7486233 -174929009 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7486272 7486404 -174928838 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7487073 7487189 -174928053 + FLAM_A SINE Alu 1 131 -2 491 129 35 0 chr6 7487246 7487331 -174927911 - MER2 DNA MER2_type -135 210 123 927 133 0 15 chr6 7487332 7487467 -174927775 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7487513 7487645 -174927597 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7487745 7487826 -174927416 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7487849 7487992 -174927250 + MIR SINE MIR 45 201 -59 2354 63 0 11 chr6 7488060 7488346 -174926896 + AluY SINE Alu 2 284 -27 280 116 23 0 chr6 7488454 7488497 -174926745 - Alu SINE Alu -257 45 2 2217 120 7 3 chr6 7488508 7488817 -174926425 - AluSq SINE Alu -3 310 1 333 323 65 8 chr6 7489170 7489294 -174925948 + MIR3 SINE MIR 14 144 -64 2121 116 0 35 chr6 7489409 7489720 -174925522 + AluSx SINE Alu 4 303 -9 1427 145 33 21 chr6 7489818 7490060 -174925182 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7490067 7490088 -174925154 + AT_rich Low_complexity Low_complexity 1 21 0 1858 175 0 0 chr6 7490096 7490382 -174924860 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7490406 7490454 -174924788 + (TA)n Simple_repeat Simple_repeat 2 51 0 230 150 25 25 chr6 7490576 7490656 -174924586 + (TA)n Simple_repeat Simple_repeat 1 80 0 2192 107 10 3 chr6 7490681 7490980 -174924262 - AluSc SINE Alu -8 301 1 682 182 34 20 chr6 7491058 7491206 -174924036 - MLT1B LTR MaLR -46 344 195 287 312 0 0 chr6 7491354 7491431 -174923811 - MIR SINE MIR -184 78 2 1535 160 24 41 chr6 7492234 7492528 -174922714 - AluJb SINE Alu -12 300 12 2301 155 171 28 chr6 7492745 7493241 -174922001 + MLT1F1 LTR MaLR 1 567 0 200 349 48 0 chr6 7493257 7493340 -174921902 - L2 LINE L2 -50 3222 3136 309 272 83 71 chr6 7493414 7493583 -174921659 - L2 LINE L2 -182 3090 2920 284 274 18 53 chr6 7493644 7493757 -174921485 - L2 LINE L2 -497 2817 2709 383 318 134 17 chr6 7493786 7494195 -174921047 - L2 LINE L2 -705 2609 2153 203 289 52 31 chr6 7494302 7494399 -174920843 - L2 LINE L2 -1343 1971 1873 2274 84 0 3 chr6 7494423 7494709 -174920533 - AluY SINE Alu -16 295 11 216 189 0 0 chr6 7494883 7494920 -174920322 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7495789 7495910 -174919332 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7495910 7495989 -174919253 + AT_rich Low_complexity Low_complexity 1 79 0 185 353 17 17 chr6 7496115 7496174 -174919068 + MER5A DNA MER1_type 68 126 -63 2343 93 0 7 chr6 7496174 7496476 -174918766 - AluSc SINE Alu -9 300 1 185 353 17 17 chr6 7496476 7496535 -174918707 + MER5A DNA MER1_type 125 186 -3 636 138 0 28 chr6 7497594 7497703 -174917539 + AluSg/x SINE Alu 193 298 -12 513 102 4 0 chr6 7497705 7497783 -174917459 - L1MB2 LINE L1 -31 6137 6058 2176 114 0 0 chr6 7498051 7498341 -174916901 + AluSg SINE Alu 1 290 -20 326 154 0 0 chr6 7498341 7498393 -174916849 + Alu SINE Alu 1 52 -250 1055 211 30 35 chr6 7498981 7499087 -174916155 - MLT1C LTR MaLR -16 451 346 598 229 91 108 chr6 7499087 7499493 -174915749 - MER93a LTR ERV1 -3 399 1 1055 211 30 35 chr6 7499493 7499618 -174915624 - MLT1C LTR MaLR -121 346 221 1075 112 0 0 chr6 7499631 7499774 -174915468 - FLAM_C SINE Alu 0 143 1 1784 163 6 26 chr6 7499776 7500089 -174915153 - AluJb SINE Alu -5 307 1 1321 133 43 0 chr6 7500089 7500300 -174914942 - MLT1C LTR MaLR -233 234 15 198 392 8 0 chr6 7500560 7500685 -174914557 + MIR3 SINE MIR 30 155 -53 1564 162 0 58 chr6 7500882 7501012 -174914230 - AluJb SINE Alu -50 262 155 2276 93 3 44 chr6 7501012 7501333 -174913909 - AluSc SINE Alu -1 308 1 1564 162 0 58 chr6 7501333 7501480 -174913762 - AluJb SINE Alu -157 155 1 229 0 54 27 chr6 7503169 7503206 -174912036 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 970 149 0 7 chr6 7503210 7503358 -174911884 - AluJb SINE Alu -24 288 142 2463 80 0 10 chr6 7503730 7504042 -174911200 - AluY SINE Alu -1 310 2 1773 116 96 0 chr6 7505154 7505405 -174909837 + AluSx SINE Alu 6 280 -32 189 0 0 0 chr6 7505405 7505426 -174909816 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 571 120 33 0 chr6 7505426 7505518 -174909724 - MLT1B LTR MaLR -295 95 1 738 173 8 24 chr6 7506518 7506645 -174908597 - FLAM_A SINE Alu -8 125 1 1233 151 18 14 chr6 7506676 7506894 -174908348 - MER20 DNA MER1_type 0 219 1 1467 84 0 0 chr6 7507228 7507407 -174907835 - AluSg/x SINE Alu -7 305 127 432 294 51 25 chr6 7507482 7507717 -174907525 + MIR SINE MIR 20 260 -2 1019 159 53 39 chr6 7507916 7508123 -174907119 - L1PB4 LINE L1 0 6156 5947 222 125 89 0 chr6 7508847 7508903 -174906339 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 371 74 49 0 chr6 7508913 7508994 -174906248 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 756 81 24 16 chr6 7509142 7509265 -174905977 - L1MB8 LINE L1 -9 6169 6046 894 209 0 0 chr6 7509280 7509433 -174905809 - FRAM SINE Alu -13 153 1 1314 121 4 61 chr6 7509437 7509668 -174905574 - AluSc SINE Alu -8 301 84 1983 116 56 3 chr6 7509668 7509953 -174905289 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7510008 7510097 -174905145 + GA-rich Low_complexity Low_complexity 4 93 0 3985 138 14 2 chr6 7510112 7510735 -174904507 - L1MB7 LINE L1 -129 6055 5425 1788 183 3 7 chr6 7510847 7511153 -174904089 + AluJo SINE Alu 1 305 -7 2335 86 0 0 chr6 7512242 7512534 -174902708 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7512547 7512842 -174902400 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7513481 7513571 -174901671 + MIR SINE MIR 87 192 -70 2378 74 10 0 chr6 7513716 7514014 -174901228 + AluSp SINE Alu 1 301 -12 288 249 24 133 chr6 7514477 7514642 -174900600 + MIR3 SINE MIR 33 179 -29 305 367 114 29 chr6 7516413 7517009 -174898233 + L2 LINE L2 2258 2904 -410 2189 83 17 17 chr6 7518114 7518416 -174896826 - AluSq SINE Alu -7 306 5 655 166 0 103 chr6 7518449 7518594 -174896648 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7518678 7518710 -174896532 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7518833 7519132 -174896110 - AluSx SINE Alu -13 299 1 222 62 0 0 chr6 7519503 7519535 -174895707 + (T)n Simple_repeat Simple_repeat 1 32 0 595 201 18 174 chr6 7519635 7519859 -174895383 + MIR SINE MIR 48 236 -26 2138 116 6 61 chr6 7519959 7520305 -174894937 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7520410 7520442 -174894800 + AT_rich Low_complexity Low_complexity 1 32 0 1915 120 0 3 chr6 7520587 7520900 -174894342 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7521279 7521348 -174893894 + FLAM_A SINE Alu 66 133 0 270 81 0 0 chr6 7521832 7521869 -174893373 + (T)n Simple_repeat Simple_repeat 1 37 0 2158 92 3 3 chr6 7522104 7522397 -174892845 - AluSc SINE Alu -16 293 1 1004 103 0 0 chr6 7522397 7522533 -174892709 - AluSq/x SINE Alu -176 136 1 745 162 0 0 chr6 7522575 7522692 -174892550 + FLAM_A SINE Alu 1 117 -16 406 0 0 36 chr6 7522700 7522756 -174892486 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 482 210 259 19 chr6 7522756 7522913 -174892329 - MIR SINE MIR -5 257 62 263 289 44 44 chr6 7523254 7523389 -174891853 - MIR SINE MIR -25 237 103 668 110 70 0 chr6 7523504 7523604 -174891638 - AluSq/x SINE Alu -204 108 2 2457 162 18 16 chr6 7523680 7524130 -174891112 - L1MB3 LINE L1 0 6183 5733 293 240 10 39 chr6 7524130 7524234 -174891008 - L1ME4a LINE L1 -31 6090 5990 318 284 14 85 chr6 7524270 7524321 -174890921 - L1MB3 LINE L1 -429 5692 5639 848 219 0 0 chr6 7524321 7524490 -174890752 + L1PA16 LINE L1 5981 6149 -17 318 284 14 85 chr6 7524490 7524579 -174890663 - L1MB3 LINE L1 -482 5639 5562 739 187 0 8 chr6 7524754 7524888 -174890354 - FLAM_C SINE Alu 0 133 1 221 284 153 9 chr6 7525725 7525871 -174889371 - MIR SINE MIR -68 140 5 183 148 0 0 chr6 7525935 7525962 -174889280 + MIR SINE MIR 83 109 -99 1574 150 14 31 chr6 7527460 7527746 -174887496 + AluJo SINE Alu 1 281 -31 1590 174 9 40 chr6 7527747 7528068 -174887174 + AluJo SINE Alu 1 311 -1 2147 122 0 0 chr6 7528096 7528407 -174886835 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7528407 7528643 -174886599 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7528735 7528835 -174886407 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7529996 7530252 -174884990 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7530272 7530586 -174884656 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7530601 7530670 -174884572 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7530680 7530781 -174884461 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7530985 7531014 -174884228 + AT_rich Low_complexity Low_complexity 1 29 0 2043 124 7 3 chr6 7531386 7531685 -174883557 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7532268 7532612 -174882630 + AluJo SINE Alu 1 302 0 21 0 0 0 chr6 7532612 7532633 -174882609 + AT_rich Low_complexity Low_complexity 1 21 0 671 188 8 16 chr6 7532949 7533196 -174882046 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7533330 7533481 -174881761 + L2 LINE L2 3147 3301 -12 329 315 62 15 chr6 7533531 7533661 -174881581 + L2 LINE L2 2910 3045 -227 2124 107 3 0 chr6 7533682 7533973 -174881269 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7534111 7537348 -174877894 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7537348 7538738 -174876504 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7538916 7539070 -174876172 + L2 LINE L2 3102 3272 0 902 173 6 0 chr6 7539726 7539888 -174875354 + AluJ SINE Alu 140 302 -10 2126 109 0 26 chr6 7539914 7540226 -174875016 + AluSq SINE Alu 1 304 -9 255 61 0 0 chr6 7540958 7540991 -174874251 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7541444 7541494 -174873748 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7541725 7541760 -174873482 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7541926 7541948 -174873294 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7543121 7543155 -174872087 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7543798 7543843 -174871399 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7544779 7544800 -174870442 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7546523 7546554 -174868688 + MIR SINE MIR 159 189 -73 1217 134 11 0 chr6 7546792 7546979 -174868263 - AluSg/x SINE Alu -29 283 95 338 253 48 0 chr6 7547082 7547165 -174868077 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7547087 7547176 -174868066 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7548320 7548598 -174866644 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7548598 7548622 -174866620 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7548907 7549308 -174865934 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7549574 7549596 -174865646 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7549834 7550133 -174865109 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7550737 7551039 -174864203 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7551473 7551536 -174863706 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7551602 7551712 -174863530 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7551733 7552009 -174863233 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7552067 7552377 -174862865 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7552744 7552843 -174862399 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7553162 7553378 -174861864 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7553383 7553680 -174861562 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7553721 7554309 -174860933 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7554736 7554851 -174860391 + AluSq/x SINE Alu 10 124 -189 2958 165 32 16 chr6 7554852 7555359 -174859883 + L1MB8 LINE L1 5308 5826 -352 1888 102 102 0 chr6 7555359 7555642 -174859600 + AluSx SINE Alu 1 312 0 2958 165 32 16 chr6 7555642 7555687 -174859555 + L1MB8 LINE L1 5826 5869 -309 745 271 133 17 chr6 7555801 7556103 -174859139 + MLT1I LTR MaLR 72 408 -1 346 322 29 47 chr6 7556105 7556276 -174858966 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7556485 7556561 -174858681 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7556578 7556630 -174858612 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7556644 7556941 -174858301 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7556943 7557009 -174858233 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7557165 7557315 -174857927 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7557315 7557694 -174857548 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7557694 7557713 -174857529 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7558345 7558466 -174856776 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7558475 7558785 -174856457 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7558785 7558918 -174856324 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7558918 7558959 -174856283 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7558989 7559049 -174856193 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7559839 7560023 -174855219 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7560024 7560326 -174854916 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7560330 7560517 -174854725 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7560522 7560599 -174854643 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7561216 7561496 -174853746 + AluSp SINE Alu 1 280 -33 360 94 0 0 chr6 7561502 7561555 -174853687 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 0 chr6 7563410 7563443 -174851799 + polypyrimidine Low_complexity Low_complexity 1 33 0 189 107 0 0 chr6 7563556 7563584 -174851658 + (CCCCCG)n Simple_repeat Simple_repeat 1 28 0 34 55 0 0 chr6 7564126 7564181 -174851061 + GC_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr6 7564305 7564326 -174850916 + GC_rich Low_complexity Low_complexity 1 21 0 355 134 55 43 chr6 7565604 7565729 -174849513 + HsTC2 DNA Tc2 9 1854 -44 342 200 19 150 chr6 7565731 7565891 -174849351 + MER103 DNA DNA 17 155 -11 2329 94 0 3 chr6 7566406 7566703 -174848539 + AluSp SINE Alu 1 296 -17 1703 179 10 23 chr6 7566754 7567062 -174848180 + AluJo SINE Alu 1 304 -8 189 254 14 84 chr6 7567188 7567259 -174847983 - MIR SINE MIR -56 206 141 279 399 43 6 chr6 7567275 7567438 -174847804 - L2 LINE L2 0 3272 3104 382 335 37 12 chr6 7567613 7567774 -174847468 - MIR3 SINE MIR -23 185 21 723 189 115 80 chr6 7568047 7568359 -174846883 + L1MC5 LINE L1 7609 7931 -30 1176 129 0 12 chr6 7569290 7569460 -174845782 - AluSg/x SINE Alu -24 288 121 324 70 0 0 chr6 7569572 7569615 -174845627 + (TC)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr6 7570009 7570032 -174845210 + (T)n Simple_repeat Simple_repeat 1 23 0 539 238 66 13 chr6 7570257 7570408 -174844834 - MIR SINE MIR -76 186 28 2292 93 3 7 chr6 7571057 7571358 -174843884 - AluSx SINE Alu -12 300 1 871 104 0 0 chr6 7571647 7571762 -174843480 - FLAM_C SINE Alu -15 118 4 2081 82 25 11 chr6 7572155 7572436 -174842806 - AluSx SINE Alu -26 286 2 195 69 0 0 chr6 7572491 7572520 -174842722 + (TG)n Simple_repeat Simple_repeat 2 30 0 215 272 88 40 chr6 7573520 7573645 -174841597 + MIR SINE MIR 17 147 -61 1809 149 0 24 chr6 7574770 7575081 -174840161 + AluJo SINE Alu 1 304 0 2097 92 22 0 chr6 7575081 7575381 -174839861 + AluSc SINE Alu 1 306 0 274 212 200 0 chr6 7575503 7575588 -174839654 + U13 snRNA snRNA 3 104 0 201 39 0 0 chr6 7575591 7575617 -174839625 + (CA)n Simple_repeat Simple_repeat 2 27 0 372 278 132 0 chr6 7575726 7575870 -174839372 - MIR SINE MIR -25 237 75 1606 109 0 0 chr6 7576278 7576479 -174838763 + AluSg SINE Alu 1 201 -109 186 346 0 25 chr6 7576967 7577048 -174838194 - L3 LINE CR1 -89 1488 1410 2012 150 0 10 chr6 7577568 7577875 -174837367 - AluJb SINE Alu -8 304 1 2064 124 3 17 chr6 7578472 7578771 -174836471 - AluSx SINE Alu -17 295 1 2553 60 0 3 chr6 7578920 7579221 -174836021 - AluY SINE Alu -11 300 1 514 228 25 51 chr6 7580011 7580169 -174835073 - MIR SINE MIR -1 261 108 2407 64 0 0 chr6 7581294 7581611 -174833631 - AluSg SINE Alu 0 317 1 1687 123 78 0 chr6 7581631 7581874 -174833368 - AluSq SINE Alu -45 268 7 331 224 84 28 chr6 7583779 7583886 -174831356 - MIR SINE MIR -76 186 74 2281 103 0 0 chr6 7583998 7584289 -174830953 + AluSx SINE Alu 1 291 -21 2204 128 0 0 chr6 7585928 7586226 -174829016 - AluSg SINE Alu -12 298 1 2419 54 40 0 chr6 7586241 7586537 -174828705 - AluY SINE Alu -3 308 1 306 277 67 8 chr6 7586572 7586691 -174828551 - MIR SINE MIR -32 230 105 508 227 74 23 chr6 7586749 7586925 -174828317 - MIR SINE MIR -62 200 16 518 134 12 0 chr6 7586990 7587072 -174828170 - AluJ/FLAM SINE Alu -228 84 2 1649 167 20 33 chr6 7587175 7587363 -174827879 - AluSx SINE Alu -16 296 112 2309 112 0 0 chr6 7587363 7587666 -174827576 - AluSq SINE Alu -10 303 1 1649 167 20 33 chr6 7587666 7587777 -174827465 - AluSx SINE Alu -200 112 1 452 188 0 0 chr6 7587798 7587883 -174827359 + L2 LINE L2 3229 3313 0 180 296 62 0 chr6 7587881 7587962 -174827280 - MIR SINE MIR -95 167 82 * 253 216 9 117 chr6 7588411 7588522 -174826720 - MIR3 SINE MIR -6 202 104 671 197 0 0 chr6 7588752 7588869 -174826373 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7588869 7588897 -174826345 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 261 290 42 53 chr6 7589083 7589345 -174825897 - L1ME4a LINE L1 -65 6056 5798 769 175 0 22 chr6 7591749 7591886 -174823356 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7596580 7596612 -174818630 + GC_rich Low_complexity Low_complexity 1 32 0 2344 65 0 20 chr6 7597305 7597598 -174817644 + AluSq SINE Alu 14 300 -13 246 62 0 0 chr6 7599203 7599235 -174816007 + (T)n Simple_repeat Simple_repeat 1 32 0 680 144 79 0 chr6 7599576 7599715 -174815527 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7601335 7601363 -174813879 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7601469 7601497 -174813745 + (CA)n Simple_repeat Simple_repeat 2 29 0 405 231 28 0 chr6 7603757 7603865 -174811377 + L1MD2 LINE L1 6249 6359 0 2306 106 0 0 chr6 7604300 7604592 -174810650 - AluSx SINE Alu -20 292 1 212 175 0 0 chr6 7604835 7604875 -174810367 - L3b LINE CR1 -3 1580 1541 2408 76 0 7 chr6 7605056 7605358 -174809884 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7608475 7608496 -174806746 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7608602 7608623 -174806619 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr6 7608783 7608828 -174806414 + (CA)n Simple_repeat Simple_repeat 2 46 0 481 274 37 93 chr6 7609106 7609460 -174805782 - MLT1I LTR MaLR -6 403 70 1080 138 69 0 chr6 7609596 7609770 -174805472 + MER5A DNA MER1_type 4 189 0 644 231 62 53 chr6 7609919 7610144 -174805098 - MIR SINE MIR -30 232 6 2170 119 0 13 chr6 7610683 7610994 -174804248 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7611163 7611185 -174804057 + AT_rich Low_complexity Low_complexity 1 22 0 2071 125 0 7 chr6 7612533 7612830 -174802412 + AluSx SINE Alu 1 295 -17 1594 155 52 38 chr6 7612871 7613161 -174802081 + AluJb SINE Alu 1 294 -18 213 267 0 0 chr6 7615396 7615441 -174799801 - L2 LINE L2 -27 3286 3242 409 160 0 80 chr6 7615492 7615592 -174799650 - AluJ/FRAM SINE Alu -3 309 218 377 104 5 19 chr6 7615608 7615667 -174799575 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7615688 7615730 -174799512 + AT_rich Low_complexity Low_complexity 1 42 0 215 254 32 16 chr6 7665968 7666031 -174749211 + CT-rich Low_complexity Low_complexity 5 68 0 2295 110 0 3 chr6 7670554 7670854 -174744388 + AluSx SINE Alu 1 299 -13 752 144 0 0 chr6 7670865 7670983 -174744259 + FLAM_C SINE Alu 1 118 -15 2387 84 7 0 chr6 7671688 7671985 -174743257 + AluSq SINE Alu 1 299 -14 222 277 15 15 chr6 7674053 7674118 -174741124 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7675633 7675679 -174739563 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7676365 7676400 -174738842 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7677542 7677601 -174737641 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7678056 7678087 -174737155 + (T)n Simple_repeat Simple_repeat 1 31 0 1657 175 0 15 chr6 7678721 7678995 -174736247 + AluJo SINE Alu 9 278 -34 2393 82 3 0 chr6 7679453 7679744 -174735498 + AluY SINE Alu 1 292 -19 2215 93 17 10 chr6 7679749 7680051 -174735191 + AluSx SINE Alu 1 304 -8 416 274 117 11 chr6 7680378 7680557 -174734685 + MIR SINE MIR 13 210 -52 302 172 17 0 chr6 7680972 7681030 -174734212 + MER5A DNA MER1_type 9 67 -122 793 185 53 0 chr6 7681045 7681196 -174734046 + FRAM SINE Alu 2 160 -6 324 179 328 22 chr6 7682607 7682741 -174732501 - MLT1G LTR MaLR 0 590 416 273 296 49 45 chr6 7682806 7682846 -174732396 + MER5A DNA MER1_type 29 67 -122 2325 114 0 0 chr6 7682846 7683145 -174732097 + AluSq SINE Alu 1 299 -14 273 296 49 45 chr6 7683145 7683254 -174731988 + MER5A DNA MER1_type 67 186 -3 1771 162 4 22 chr6 7683670 7683948 -174731294 - AluSx SINE Alu -35 277 5 2030 129 13 13 chr6 7683960 7684271 -174730971 - AluJb SINE Alu -1 311 1 796 239 112 15 chr6 7684390 7684658 -174730584 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7685485 7685515 -174729727 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 791 169 15 0 chr6 7686324 7686454 -174728788 + FLAM_A SINE Alu 1 132 -1 617 210 0 8 chr6 7686736 7686855 -174728387 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7686856 7686876 -174728366 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2255 109 0 3 chr6 7689221 7689514 -174725728 - AluSq SINE Alu -21 292 1 2285 83 43 0 chr6 7690040 7690340 -174724902 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7690351 7690381 -174724861 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2448 99 0 3 chr6 7690385 7690699 -174724543 - AluSq SINE Alu 0 313 1 1203 215 115 6 chr6 7691273 7691603 -174723639 + MLT1B LTR MaLR 9 374 -16 2148 139 0 0 chr6 7691939 7692242 -174723000 - AluSx SINE Alu -7 305 3 183 200 22 22 chr6 7692583 7692628 -174722614 + L3 LINE CR1 1514 1558 -19 866 228 122 4 chr6 7692711 7692948 -174722294 + LTR41 LTR ERVL 1 265 -508 512 90 0 26 chr6 7693198 7693276 -174721966 - Alu SINE Alu -9 302 227 365 229 57 57 chr6 7693277 7693417 -174721825 + LTR41 LTR ERVL 620 759 -14 578 243 77 0 chr6 7694090 7694259 -174720983 + MER5A DNA MER1_type 7 188 -1 206 244 13 39 chr6 7694372 7694450 -174720792 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7694892 7694946 -174720296 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 333 242 125 31 chr6 7696205 7696333 -174718909 - L2 LINE L2 -1 3312 3173 1874 246 79 35 chr6 7696483 7696926 -174718316 + L1MC4 LINE L1 7348 7829 -213 2432 73 17 0 chr6 7696926 7697226 -174718016 + AluSp SINE Alu 1 305 -8 1874 246 79 35 chr6 7697226 7697431 -174717811 + L1MC4 LINE L1 7829 8024 -18 209 355 35 23 chr6 7697590 7697762 -174717480 - L2 LINE L2 -541 2773 2600 2352 103 0 3 chr6 7697969 7698270 -174716972 + AluSp SINE Alu 1 300 -13 326 318 162 0 chr6 7698377 7698531 -174716711 + MIR SINE MIR 33 211 -51 203 273 91 30 chr6 7700559 7700658 -174714584 - MER5A DNA MER1_type -34 155 51 657 0 80 0 chr6 7700893 7701006 -174714236 + (TA)n Simple_repeat Simple_repeat 2 123 0 2285 82 21 0 chr6 7701006 7701288 -174713954 - AluSg SINE Alu -22 288 1 506 284 231 33 chr6 7701336 7701635 -174713607 + L3 LINE CR1 1207 1564 -13 338 309 87 0 chr6 7701888 7702014 -174713228 - MIR SINE MIR -108 154 18 918 101 0 81 chr6 7702025 7702174 -174713068 - AluJo SINE Alu -175 137 1 1768 149 0 30 chr6 7702875 7703170 -174712072 + AluSx SINE Alu 3 288 -24 2525 63 0 0 chr6 7703180 7703482 -174711760 + AluY SINE Alu 1 302 -9 1166 118 0 0 chr6 7703482 7703665 -174711577 + AluSg/x SINE Alu 134 316 0 701 128 9 0 chr6 7703731 7703840 -174711402 - FLAM_C SINE Alu -32 111 2 2251 137 0 0 chr6 7703853 7704160 -174711082 - AluSx SINE Alu -5 307 1 395 249 171 8 chr6 7704626 7704794 -174710448 + MIR SINE MIR 21 213 -49 196 286 143 51 chr6 7704769 7704867 -174710375 - L2 LINE L2 -13 3300 3194 * 288 0 0 0 chr6 7704905 7704937 -174710305 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7704936 7704965 -174710277 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2222 89 11 7 chr6 7704992 7705273 -174709969 - AluSx SINE Alu -30 282 1 2578 63 0 0 chr6 7705806 7706108 -174709134 + AluY SINE Alu 1 302 -9 2282 110 3 0 chr6 7706121 7706420 -174708822 + AluSx SINE Alu 1 300 -12 2267 92 35 0 chr6 7707283 7707565 -174707677 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7709614 7709636 -174705606 + AT_rich Low_complexity Low_complexity 1 22 0 2185 103 7 7 chr6 7709666 7709822 -174705420 - AluSx SINE Alu -21 291 133 2319 117 0 0 chr6 7709822 7710122 -174705120 - AluSx SINE Alu -12 300 1 2185 103 7 7 chr6 7710122 7710256 -174704986 - AluSx SINE Alu -178 134 1 234 212 384 13 chr6 7711128 7711279 -174703963 - MIR SINE MIR -18 244 38 1998 146 6 16 chr6 7711969 7712284 -174702958 + AluSx SINE Alu 1 312 0 252 329 95 25 chr6 7712590 7712748 -174702494 + MIR SINE MIR 82 250 -12 2184 90 10 29 chr6 7713203 7713514 -174701728 + AluSx SINE Alu 1 305 -7 1038 128 60 0 chr6 7717475 7717624 -174697618 - AluSg/x SINE Alu -18 292 135 2103 125 3 23 chr6 7717687 7717990 -174697252 + AluSx SINE Alu 1 297 -15 2043 140 14 3 chr6 7718365 7718658 -174696584 + AluJb SINE Alu 1 296 -16 291 324 170 32 chr6 7718670 7719112 -174696130 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7719126 7719260 -174695982 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7719582 7719748 -174695494 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7719749 7719778 -174695464 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7719781 7719994 -174695248 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7720025 7720289 -174694953 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7720357 7720424 -174694818 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7720662 7720851 -174694391 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7720981 7721295 -174693947 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7722128 7722243 -174692999 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7723221 7723342 -174691900 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7723514 7723815 -174691427 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7724019 7724319 -174690923 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7725601 7725727 -174689515 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7725993 7726280 -174688962 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7726700 7726898 -174688344 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7727221 7727517 -174687725 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7728210 7728341 -174686901 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7729059 7729357 -174685885 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7729432 7729740 -174685502 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7729792 7729912 -174685330 + AluSg/x SINE Alu 173 292 -20 1823 107 103 4 chr6 7730284 7730555 -174684687 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7730711 7730802 -174684440 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7730819 7730966 -174684276 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7731154 7731244 -174683998 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7732224 7732289 -174682953 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7732711 7733018 -174682224 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7733210 7733491 -174681751 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7734126 7734384 -174680858 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7735250 7735397 -174679845 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7735748 7736047 -174679195 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7736076 7736449 -174678793 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7736800 7736967 -174678275 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7737205 7737511 -174677731 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7738242 7738272 -174676970 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7740245 7740533 -174674709 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7740784 7740979 -174674263 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7741276 7741617 -174673625 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7741614 7742180 -174673062 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7742193 7742897 -174672345 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7742897 7743856 -174671386 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7744972 7745270 -174669972 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7745271 7745547 -174669695 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7745709 7745734 -174669508 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7745945 7745993 -174669249 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7745993 7746286 -174668956 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7746286 7746653 -174668589 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7746770 7746794 -174668448 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7746794 7747009 -174668233 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7747009 7747301 -174667941 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7747301 7747398 -174667844 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7747398 7747814 -174667428 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7747814 7748120 -174667122 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7748120 7748173 -174667069 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7748173 7748336 -174666906 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7748336 7748640 -174666602 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7748640 7748786 -174666456 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7748786 7749089 -174666153 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7749089 7749159 -174666083 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7749159 7749259 -174665983 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7749368 7749483 -174665759 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7749636 7749767 -174665475 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7751412 7751533 -174663709 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7751862 7751915 -174663327 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7751916 7752222 -174663020 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7752443 7752561 -174662681 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7752587 7752692 -174662550 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7752693 7753000 -174662242 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7753629 7753905 -174661337 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7753905 7754017 -174661225 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7754224 7754505 -174660737 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7754508 7754538 -174660704 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7755136 7755449 -174659793 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7755449 7755495 -174659747 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7755510 7755808 -174659434 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7755808 7755854 -174659388 + L1MA5 LINE L1 6253 6300 0 659 345 26 7 chr6 7755916 7756220 -174659022 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7756681 7756987 -174658255 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7757489 7757517 -174657725 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7759517 7759826 -174655416 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7760214 7760253 -174654989 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 79 3 0 chr6 7760253 7760543 -174654699 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7760565 7760586 -174654656 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7761022 7761331 -174653911 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7761438 7761916 -174653326 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7761954 7762173 -174653069 - MER102b DNA MER1_type -1087 341 179 1786 161 18 7 chr6 7762173 7762452 -174652790 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7762452 7762604 -174652638 - MER102b DNA MER1_type -1249 179 10 4902 207 98 16 chr6 7763051 7763083 -174652159 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7763083 7763385 -174651857 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7763385 7763616 -174651626 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7763616 7763925 -174651317 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7763925 7765126 -174650116 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7765154 7765206 -174650036 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7765235 7765346 -174649896 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7766174 7767016 -174648226 - L1PB1 LINE L1 -178 5973 5128 1225 219 0 7 chr6 7769247 7769535 -174645707 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7769566 7769793 -174645449 + AluSg/x SINE Alu 85 309 -1 4389 156 137 49 chr6 7770600 7771947 -174643295 + pTR5 LTR ERV1 730 2328 -110 191 264 84 78 chr6 7771947 7772114 -174643128 - L2 LINE L2 -482 2832 2665 2133 106 14 7 chr6 7772221 7772513 -174642729 + AluY SINE Alu 1 294 -17 468 88 15 0 chr6 7772662 7772730 -174642512 - MER41B LTR ERV1 -86 549 481 1854 152 21 0 chr6 7772848 7773137 -174642105 + AluJo SINE Alu 1 295 -17 1828 166 0 34 chr6 7773140 7773460 -174641782 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7773609 7773638 -174641604 + AT_rich Low_complexity Low_complexity 1 29 0 13333 186 26 33 chr6 7773652 7776226 -174639016 + L1PB1 LINE L1 6 2596 -4300 2154 125 6 3 chr6 7776226 7776538 -174638704 + AluSq SINE Alu 1 313 0 13333 186 26 33 chr6 7776538 7778094 -174637148 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7778094 7778131 -174637111 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13333 186 26 33 chr6 7778131 7780272 -174634970 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7780272 7780318 -174634924 + (CA)n Simple_repeat Simple_repeat 2 47 0 13333 186 26 33 chr6 7780318 7780702 -174634540 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7780737 7780776 -174634466 + AT_rich Low_complexity Low_complexity 1 39 0 1668 174 24 7 chr6 7782295 7782593 -174632649 + AluJo SINE Alu 1 303 -9 2256 96 13 3 chr6 7783371 7783673 -174631569 - AluSx SINE Alu -7 305 1 244 257 11 140 chr6 7784275 7784360 -174630882 - L1MA10 LINE L1 -4 6330 6236 1553 129 0 0 chr6 7784360 7784584 -174630658 - AluSg/x SINE Alu -3 309 86 244 257 11 140 chr6 7784584 7784603 -174630639 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7784603 7784647 -174630595 + (TA)n Simple_repeat Simple_repeat 2 45 0 2616 182 29 76 chr6 7784655 7785134 -174630108 - L1ME1 LINE L1 -92 6074 5574 1272 167 114 43 chr6 7785134 7785415 -174629827 + AluJo SINE Alu 1 301 -11 2616 182 29 76 chr6 7785415 7785627 -174629615 - L1ME1 LINE L1 -592 5574 5416 2306 92 3 3 chr6 7785627 7785922 -174629320 - AluSq SINE Alu -18 295 1 2616 182 29 76 chr6 7785922 7785954 -174629288 - L1ME1 LINE L1 -750 5416 5384 2230 168 104 28 chr6 7786409 7786878 -174628364 - MLT1D LTR MaLR 0 505 1 2176 109 0 10 chr6 7787237 7787540 -174627702 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789304 7789557 -174625685 - L1MC5 LINE L1 -1 7960 7722 1949 131 3 20 chr6 7789557 7789862 -174625380 + AluSx SINE Alu 1 300 -12 812 222 144 92 chr6 7789862 7790274 -174624968 - L1MC5 LINE L1 -239 7722 7260 587 220 30 18 chr6 7790406 7790574 -174624668 - L1MC5 LINE L1 -733 7228 7059 2271 108 0 3 chr6 7791038 7791343 -174623899 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7792511 7792532 -174622710 + AT_rich Low_complexity Low_complexity 1 21 0 2329 103 0 0 chr6 7792539 7792840 -174622402 + AluSx SINE Alu 1 301 -11 2383 215 75 2 chr6 7792900 7793417 -174621825 + MER68 LTR ERV1 1 555 -7 384 267 68 19 chr6 7793590 7793796 -174621446 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7793854 7793899 -174621343 + T-rich Low_complexity Low_complexity 1 45 0 1463 148 4 4 chr6 7793921 7794150 -174621092 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7794528 7794860 -174620382 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7795571 7795883 -174619359 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7795946 7796044 -174619198 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7796744 7796867 -174618375 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7796867 7797166 -174618076 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7797166 7797464 -174617778 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7797691 7797873 -174617369 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7798076 7798394 -174616848 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7798765 7799061 -174616181 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7799234 7799526 -174615716 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7801323 7801637 -174613605 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7801704 7802014 -174613228 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7802030 7802316 -174612926 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7802399 7802506 -174612736 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7802506 7802683 -174612559 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7802683 7803012 -174612230 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7803012 7803220 -174612022 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7803220 7803504 -174611738 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7803661 7803821 -174611421 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7804036 7804338 -174610904 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7804704 7804765 -174610477 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7805025 7805056 -174610186 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7805954 7806103 -174609139 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7806363 7806840 -174608402 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7806934 7807226 -174608016 + AluSx SINE Alu 5 296 -16 737 258 159 50 chr6 7807281 7807687 -174607555 - L1ME LINE L1 -354 5808 5447 2301 137 23 35 chr6 7807687 7808082 -174607160 + MLT1B LTR MaLR 1 390 0 737 258 159 50 chr6 7808082 7808112 -174607130 - L1ME LINE L1 -715 5447 5422 2231 103 14 0 chr6 7808112 7808404 -174606838 - AluSx SINE Alu -16 296 1 737 258 159 50 chr6 7808404 7808417 -174606825 - L1ME LINE L1 -740 5422 5412 2349 81 7 0 chr6 7808417 7808713 -174606529 - AluY SINE Alu -13 298 1 737 258 159 50 chr6 7808713 7808888 -174606354 - L1ME LINE L1 -750 5412 5257 2182 95 3 3 chr6 7808888 7809172 -174606070 - AluSg SINE Alu -22 288 5 1585 138 8 8 chr6 7809173 7809420 -174605822 + AluSg SINE Alu 55 301 -9 737 258 159 50 chr6 7809420 7809445 -174605797 - L1ME LINE L1 -905 5257 5236 1911 140 74 37 chr6 7809445 7809796 -174605446 + THE1B LTR MaLR 1 364 0 737 258 159 50 chr6 7809796 7810602 -174604640 - L1ME LINE L1 -926 5236 4164 1853 59 0 0 chr6 7810602 7810821 -174604421 - AluY SINE Alu -47 264 46 737 258 159 50 chr6 7810821 7810839 -174604403 - L1ME LINE L1 -1998 4164 4149 809 182 8 0 chr6 7810974 7811106 -174604136 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7811209 7811485 -174603757 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7811487 7811794 -174603448 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7811799 7811956 -174603286 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7811999 7812204 -174603038 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7813104 7813294 -174601948 - AluSg/x SINE Alu -40 272 83 2421 50 3 47 chr6 7814227 7814545 -174600697 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7816865 7817037 -174598205 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7817114 7817558 -174597684 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7817677 7817956 -174597286 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7818098 7818296 -174596946 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7818579 7818860 -174596382 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7819006 7819169 -174596073 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7819462 7819510 -174595732 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7819659 7819723 -174595519 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7820042 7820197 -174595045 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7820290 7820472 -174594770 + L1ME4a LINE L1 5671 5865 -256 2332 96 0 0 chr6 7820641 7820944 -174594298 + AluSx SINE Alu 1 303 -9 2326 115 3 0 chr6 7821721 7822025 -174593217 + AluSp SINE Alu 1 305 -8 2044 146 7 0 chr6 7822203 7822497 -174592745 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7823382 7823410 -174591832 + (TG)n Simple_repeat Simple_repeat 2 29 0 2166 131 0 0 chr6 7823471 7823777 -174591465 + AluSx SINE Alu 1 306 -6 2554 61 0 3 chr6 7824350 7824661 -174590581 + AluY SINE Alu 2 311 0 486 200 0 20 chr6 7824723 7824823 -174590419 + FLAM_A SINE Alu 41 138 -4 636 243 153 16 chr6 7826685 7826874 -174588368 - MER58C DNA MER1_type 0 215 1 1272 155 120 11 chr6 7826882 7827166 -174588076 + MER33 DNA MER1_type 1 315 -9 1873 149 42 0 chr6 7828179 7828468 -174586774 - AluSx SINE Alu -11 301 1 1602 151 102 31 chr6 7828572 7828897 -174586345 - MER7A DNA MER2_type 0 346 1 291 327 9 19 chr6 7829640 7829747 -174585495 - L2 LINE L2 -497 2817 2712 543 215 74 0 chr6 7830139 7830302 -174584940 + MER104 DNA MER2_type 4 178 -2 1265 174 4 8 chr6 7831885 7832120 -174583122 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7832267 7832300 -174582942 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7832440 7832473 -174582769 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1977 168 3 0 chr6 7832476 7832786 -174582456 - AluJb SINE Alu -1 311 1 4738 141 59 50 chr6 7832810 7833152 -174582090 - L1MB3 LINE L1 -1 6182 5845 1966 137 7 7 chr6 7833152 7833451 -174581791 - AluSx SINE Alu -13 299 1 4738 141 59 50 chr6 7833451 7833977 -174581265 - L1MB3 LINE L1 -338 5845 5307 1349 209 10 39 chr6 7833977 7834283 -174580959 - AluJo SINE Alu -15 297 1 4738 141 59 50 chr6 7834283 7834474 -174580768 - L1MB3 LINE L1 -876 5307 5119 2086 136 3 3 chr6 7834531 7834826 -174580416 - AluSx SINE Alu -17 295 1 2402 97 3 0 chr6 7835199 7835510 -174579732 - AluSp SINE Alu -1 312 1 885 134 20 7 chr6 7835512 7835661 -174579581 - AluYa8 SINE Alu -10 300 150 308 95 0 0 chr6 7835661 7835703 -174579539 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7835703 7835760 -174579482 + (TG)n Simple_repeat Simple_repeat 2 58 0 1948 127 4 0 chr6 7835760 7836028 -174579214 - AluSg SINE Alu -28 282 14 303 29 0 0 chr6 7836028 7836062 -174579180 - AluY SINE Alu -252 50 17 1148 133 5 51 chr6 7836062 7836257 -174578985 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7836285 7836305 -174578937 + (A)n Simple_repeat Simple_repeat 1 20 0 1486 165 64 32 chr6 7838269 7838568 -174576674 - MER58D DNA MER1_type -2050 370 82 2288 105 0 0 chr6 7838568 7838862 -174576380 + AluSx SINE Alu 1 294 -18 2211 99 14 3 chr6 7838862 7839156 -174576086 + AluSx SINE Alu 1 297 -15 1486 165 64 32 chr6 7839156 7839200 -174576042 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7839503 7839568 -174575674 + AT_rich Low_complexity Low_complexity 1 65 0 2426 202 7 0 chr6 7841232 7841657 -174573585 + Tigger7 DNA MER2_type 2 429 -304 1393 162 131 4 chr6 7841657 7841916 -174573326 + AluJo SINE Alu 16 307 -5 2428 130 46 23 chr6 7841916 7842307 -174572935 + Tigger7 DNA MER2_type 440 839 -1648 1560 136 62 0 chr6 7842306 7842548 -174572694 + Tigger7 DNA MER2_type 2227 2483 -4 * 2523 51 14 0 chr6 7842856 7843150 -174572092 + AluY SINE Alu 1 298 -13 1013 164 0 0 chr6 7843163 7843322 -174571920 + FRAM SINE Alu 1 159 -17 1976 137 3 22 chr6 7843455 7843769 -174571473 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7844184 7844206 -174571036 + AT_rich Low_complexity Low_complexity 1 22 0 988 235 256 13 chr6 7844538 7845301 -174569941 - L2 LINE L2 0 3313 2369 2243 107 13 0 chr6 7846439 7846739 -174568503 - AluSx SINE Alu -8 304 1 198 219 24 0 chr6 7847640 7847681 -174567561 + MIR SINE MIR 141 182 -80 481 253 45 11 chr6 7847806 7847984 -174567258 + L1MC5 LINE L1 7260 7443 -518 2349 105 0 0 chr6 7847998 7848293 -174566949 + AluSg SINE Alu 1 295 -15 658 209 90 65 chr6 7848336 7848690 -174566552 + L1MC5 LINE L1 7554 7916 -45 665 138 16 16 chr6 7848711 7848834 -174566408 - AluJo/FRAM SINE Alu -25 287 165 392 97 113 0 chr6 7848834 7848896 -174566346 - AluJ/FLAM SINE Alu -233 69 1 2537 84 0 0 chr6 7849236 7849547 -174565695 + AluSx SINE Alu 1 311 -1 484 219 47 111 chr6 7849553 7849850 -174565392 + L2 LINE L2 3030 3307 -6 2195 100 43 0 chr6 7850255 7850554 -174564688 + AluSx SINE Alu 1 312 0 213 276 79 0 chr6 7850960 7851036 -174564206 + MIR3 SINE MIR 76 157 -51 2327 107 0 0 chr6 7851173 7851482 -174563760 + AluY SINE Alu 1 309 -2 1823 90 13 87 chr6 7851800 7852099 -174563143 - AluSq SINE Alu -6 307 31 8970 157 42 30 chr6 7852099 7853775 -174561467 + pTR5 LTR ERV1 743 2438 0 1543 183 39 0 chr6 7853926 7854211 -174561031 + AluSq SINE Alu 1 296 -17 255 159 0 0 chr6 7854301 7854345 -174560897 + MIR SINE MIR 101 144 -64 752 184 160 10 chr6 7854379 7854585 -174560657 + MER33 DNA MER1_type 1 237 -87 1663 164 29 0 chr6 7854711 7854986 -174560256 + AluJo SINE Alu 1 283 -29 794 163 81 73 chr6 7855353 7855368 -174559874 - L1MA4 LINE L1 -2 6298 6285 2327 96 0 3 chr6 7855368 7855661 -174559581 + AluSg SINE Alu 1 292 -18 794 163 81 73 chr6 7855661 7855770 -174559472 - L1MA4 LINE L1 -15 6285 6178 2001 130 0 42 chr6 7855770 7856077 -174559165 + AluSx SINE Alu 1 294 -18 794 163 81 73 chr6 7856077 7856197 -174559045 - L1MA4 LINE L1 -122 6178 6051 2161 101 30 7 chr6 7856678 7856974 -174558268 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7857085 7857107 -174558135 + AT_rich Low_complexity Low_complexity 1 22 0 1522 184 46 23 chr6 7857135 7857440 -174557802 + AluJo SINE Alu 1 312 0 197 244 122 24 chr6 7857723 7857805 -174557437 + MIR3 SINE MIR 73 162 -46 2110 114 7 3 chr6 7860153 7860442 -174554800 - AluSx SINE Alu -22 290 1 918 98 53 0 chr6 7860512 7860644 -174554598 + MER85 DNA T2_type 1 139 0 1742 173 23 23 chr6 7860699 7861005 -174554237 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7861336 7861383 -174553859 + (CA)n Simple_repeat Simple_repeat 2 48 0 3168 142 95 2 chr6 7861665 7862701 -174552541 + L1M3f LINE L1 84 1232 -4096 2342 112 0 10 chr6 7862702 7863014 -174552228 + AluSx SINE Alu 1 309 -3 2251 116 3 0 chr6 7863169 7863470 -174551772 - AluSx SINE Alu -10 302 1 1418 164 38 57 chr6 7863699 7864126 -174551116 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7864126 7864152 -174551090 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1418 164 38 57 chr6 7864152 7864173 -174551069 + AluJb SINE Alu 448 468 0 2052 118 11 0 chr6 7864288 7864598 -174550644 + AluSp SINE Alu 1 313 0 2200 116 7 23 chr6 7864948 7865258 -174549984 - AluSg SINE Alu -5 305 1 1746 172 3 20 chr6 7865598 7865895 -174549347 - AluJo SINE Alu -15 297 6 432 239 109 16 chr6 7865937 7866121 -174549121 - HAL1 LINE L1 -69 2438 2238 522 179 9 9 chr6 7866174 7866280 -174548962 - FLAM_A SINE Alu -9 133 28 331 321 131 25 chr6 7866288 7866684 -174548558 - HAL1 LINE L1 -345 2162 1725 287 178 131 99 chr6 7866654 7866791 -174548451 - HAL1 LINE L1 -1330 1177 1031 * 2443 70 0 10 chr6 7866791 7867103 -174548139 + AluSc SINE Alu 1 309 0 287 178 131 99 chr6 7867103 7867156 -174548086 - HAL1 LINE L1 -1476 1031 981 357 176 0 44 chr6 7867165 7867233 -174548009 + MER74C LTR ERVL 6 70 -390 401 220 115 55 chr6 7867352 7867552 -174547690 - HAL1 LINE L1 -1940 567 356 7457 169 93 39 chr6 7867592 7869201 -174546041 + pTR5 LTR ERV1 743 2438 0 348 113 72 124 chr6 7869782 7869860 -174545382 - MER97c DNA MER1_type? -915 175 101 1681 168 0 14 chr6 7869860 7870151 -174545091 - AluJb SINE Alu -25 287 1 348 113 72 124 chr6 7870151 7870169 -174545073 - MER97c DNA MER1_type? -989 101 84 181 273 0 0 chr6 7870402 7870446 -174544796 - L2 LINE L2 -2 3311 3268 2089 110 14 3 chr6 7870489 7870780 -174544462 + AluSq SINE Alu 1 294 -19 2271 79 0 40 chr6 7870780 7871084 -174544158 + AluY SINE Alu 1 292 -19 2129 115 3 16 chr6 7871127 7871441 -174543801 - AluSx SINE Alu -2 310 1 276 361 57 0 chr6 7871871 7871993 -174543249 - L2 LINE L2 -564 2750 2622 2057 135 21 12 chr6 7873064 7873398 -174541844 - MER1B DNA MER1_type 0 337 1 208 216 0 39 chr6 7873593 7873644 -174541598 - L2 LINE L2 -4 3309 3261 2254 65 135 29 chr6 7873873 7873984 -174541258 - MER51B LTR ERV1 0 377 279 2259 67 0 51 chr6 7873984 7874299 -174540943 + AluY SINE Alu 1 299 -12 2254 65 135 29 chr6 7874299 7874528 -174540714 - MER51B LTR ERV1 -98 279 1 232 195 0 0 chr6 7874756 7874797 -174540445 + L2 LINE L2 3226 3266 -6 180 323 157 15 chr6 7874803 7875134 -174540108 - L2 LINE L2 -341 2973 2596 2163 103 0 22 chr6 7875209 7875528 -174539714 + AluSq SINE Alu 1 312 -1 1691 179 33 0 chr6 7875572 7875874 -174539368 - AluJo SINE Alu 0 312 1 2231 99 0 0 chr6 7876205 7876507 -174538735 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7876625 7876646 -174538596 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7876957 7876978 -174538264 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2280 91 10 0 chr6 7877095 7877404 -174537838 - AluSx SINE Alu 0 312 1 1811 117 20 34 chr6 7877574 7877872 -174537370 - AluSx SINE Alu -18 294 1 2229 181 48 9 chr6 7877874 7878316 -174536926 + L1MB7 LINE L1 5706 6164 -20 249 332 132 20 chr6 7878351 7878700 -174536542 - L1MC4a LINE L1 -1602 6206 5819 1703 144 6 52 chr6 7878763 7878873 -174536369 - AluJo SINE Alu 0 312 198 4585 126 96 21 chr6 7878873 7879637 -174535605 + LTR1B LTR ERV1 4 824 -2 1703 144 6 52 chr6 7879637 7879853 -174535389 - AluJo SINE Alu -114 198 1 926 254 132 46 chr6 7879854 7880178 -174535064 - L1MC4a LINE L1 -2042 5766 5389 2130 114 3 0 chr6 7880178 7880484 -174534758 - AluSx SINE Alu -5 307 1 926 254 132 46 chr6 7880484 7880620 -174534622 - L1MC4a LINE L1 -2419 5389 5266 1698 146 28 24 chr6 7880752 7881040 -174534202 + AluJb SINE Alu 8 296 -16 2516 182 97 10 chr6 7881438 7881932 -174533310 + MLT1F1 LTR MaLR 20 556 -11 2144 94 3 0 chr6 7882063 7882351 -174532891 + AluSq SINE Alu 1 289 -24 1586 167 44 14 chr6 7882369 7882662 -174532580 - AluJb SINE Alu -10 302 1 7706 143 113 69 chr6 7882672 7884297 -174530945 + pTR5 LTR ERV1 742 2438 0 2766 189 86 18 chr6 7884335 7884906 -174530336 + LTR1B LTR ERV1 1 610 -216 2016 122 3 0 chr6 7884913 7885199 -174530043 + AluSq SINE Alu 7 293 -20 817 226 66 9 chr6 7885207 7885419 -174529823 - MER67B LTR ERV1 -437 224 1 2133 143 74 25 chr6 7885424 7885702 -174529540 - L1MB3 LINE L1 -69 6114 5806 2184 95 3 0 chr6 7885702 7885996 -174529246 + AluSg SINE Alu 2 296 -14 2133 143 74 25 chr6 7885996 7886152 -174529090 - L1MB3 LINE L1 -377 5806 5659 1573 137 96 0 chr6 7886152 7886422 -174528820 - AluJo SINE Alu -8 304 9 495 291 145 42 chr6 7886713 7886967 -174528275 + L2 LINE L2 2917 3220 -93 1287 182 164 33 chr6 7886967 7887015 -174528227 - MER93b LTR ERV1 0 373 333 2291 94 0 0 chr6 7887015 7887314 -174527928 + AluSc SINE Alu 1 299 -10 1287 182 164 33 chr6 7887314 7887595 -174527647 - MER93b LTR ERV1 -40 333 1 495 291 145 42 chr6 7887595 7887698 -174527544 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7888357 7888389 -174526853 + AT_rich Low_complexity Low_complexity 1 32 0 769 161 31 0 chr6 7888409 7888539 -174526703 + AluJb SINE Alu 179 312 0 668 262 4 152 chr6 7888539 7888687 -174526555 + L1MC2 LINE L1 5672 5840 -340 1661 140 16 23 chr6 7888687 7888822 -174526420 + AluJo SINE Alu 1 135 -177 2087 130 0 0 chr6 7888822 7889114 -174526128 + AluSx SINE Alu 1 292 -20 1661 140 16 23 chr6 7889114 7889286 -174525956 + AluJo SINE Alu 135 306 -6 668 262 4 152 chr6 7889286 7889308 -174525934 + L1MC2 LINE L1 5840 5864 -316 1011 143 15 35 chr6 7889308 7889511 -174525731 + L1MB3 LINE L1 5983 6181 -2 2171 107 19 29 chr6 7889511 7889826 -174525416 + L1MB3 LINE L1 5812 6131 -52 1844 119 40 0 chr6 7889826 7890104 -174525138 + AluSg SINE Alu 1 289 -21 2171 107 19 29 chr6 7890104 7890156 -174525086 + L1MB3 LINE L1 6131 6182 -1 668 262 4 152 chr6 7890156 7890182 -174525060 + L1MC2 LINE L1 5793 5821 -359 330 209 86 29 chr6 7890568 7890673 -174524569 + LTR68 LTR ERV1 615 725 -15 391 284 30 12 chr6 7890737 7890819 -174524423 + L1P5 LINE L1 5276 5355 -796 1867 144 24 0 chr6 7890819 7891111 -174524131 + AluSx SINE Alu 1 299 -13 391 284 30 12 chr6 7891111 7891197 -174524045 + L1P5 LINE L1 5355 5447 -704 1305 179 0 60 chr6 7891286 7891571 -174523671 + L1MB8 LINE L1 5910 6177 -1 1229 113 88 29 chr6 7891579 7891819 -174523423 + L1MA9 LINE L1 6059 6312 0 1640 168 41 3 chr6 7891833 7892125 -174523117 + AluJb SINE Alu 2 304 -8 340 219 23 76 chr6 7892164 7892294 -174522948 + L1ME LINE L1 5455 5578 -543 427 270 103 17 chr6 7892349 7892523 -174522719 + L1ME LINE L1 5581 5769 -393 576 269 32 56 chr6 7892632 7892759 -174522483 + L1ME3A LINE L1 5706 5826 -344 2312 83 0 0 chr6 7892759 7893059 -174522183 + AluSx SINE Alu 1 300 -12 576 269 32 56 chr6 7893059 7893180 -174522062 + L1ME3A LINE L1 5826 5948 -222 462 232 168 0 chr6 7894457 7894609 -174520633 + MER5A DNA MER1_type 4 186 -3 1359 146 0 53 chr6 7895529 7895636 -174519606 - AluJo SINE Alu -76 236 125 2343 69 10 3 chr6 7895636 7895941 -174519301 - AluSx SINE Alu 0 312 6 1359 146 0 53 chr6 7895941 7896080 -174519162 - AluJo SINE Alu -187 125 3 333 234 76 21 chr6 7896134 7896279 -174518963 - L1ME4a LINE L1 -2 6119 5967 2156 96 3 3 chr6 7896673 7896964 -174518278 - AluSp SINE Alu -22 291 1 193 128 0 77 chr6 7897038 7897077 -174518165 + MIR SINE MIR 217 252 -10 491 318 74 9 chr6 7897455 7897672 -174517570 + L2 LINE L2 1912 2142 -1172 3133 142 126 50 chr6 7897718 7898246 -174516996 - L1MB3 LINE L1 -14 6169 5683 1201 206 53 14 chr6 7898246 7898527 -174516715 - AluJo SINE Alu -20 292 1 1660 103 4 4 chr6 7898533 7898765 -174516477 - AluSc SINE Alu -16 293 62 3133 142 126 50 chr6 7898765 7898896 -174516346 - L1MB3 LINE L1 -504 5679 5452 1776 177 0 0 chr6 7898914 7899214 -174516028 - AluSx SINE Alu -12 300 1 2209 107 3 0 chr6 7899746 7900055 -174515187 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7900280 7900336 -174514906 + A-rich Low_complexity Low_complexity 1 56 0 437 276 103 61 chr6 7900431 7900913 -174514329 - L2 LINE L2 -171 3101 2585 416 223 0 138 chr6 7900946 7901076 -174514166 - L2 LINE L2 0 3272 3161 771 157 8 0 chr6 7901102 7901223 -174514019 - MSTD LTR MaLR -2 394 273 2034 104 0 52 chr6 7901263 7901571 -174513671 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7901571 7901627 -174513615 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 873 150 7 0 chr6 7901653 7901793 -174513449 - AluJb SINE Alu -171 141 1 726 211 173 46 chr6 7901795 7901930 -174513312 - MSTD LTR MaLR -129 267 150 1509 173 0 22 chr6 7901930 7902207 -174513035 - AluJo SINE Alu -31 281 11 726 211 173 46 chr6 7902207 7902308 -174512934 - MSTD LTR MaLR -246 150 1 415 338 77 5 chr6 7902427 7902649 -174512593 - L2 LINE L2 -225 3047 2810 726 306 197 22 chr6 7902725 7903369 -174511873 - L2 LINE L2 -746 2568 1812 190 154 0 77 chr6 7903684 7903723 -174511519 - MIR SINE MIR -10 252 217 399 210 68 49 chr6 7904183 7904204 -174511038 + L1ME4a LINE L1 5957 5976 -145 2105 107 0 3 chr6 7904204 7904503 -174510739 + AluSc SINE Alu 1 298 -11 399 210 68 49 chr6 7904503 7904643 -174510599 + L1ME4a LINE L1 5976 6121 0 1588 165 0 0 chr6 7904695 7904961 -174510281 + AluJo SINE Alu 2 267 -45 2080 101 3 13 chr6 7905458 7905756 -174509486 - AluSq SINE Alu -18 295 1 2217 72 23 3 chr6 7906078 7906382 -174508860 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7906920 7906949 -174508293 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2343 70 0 3 chr6 7907050 7907352 -174507890 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7907475 7907524 -174507718 + (A)n Simple_repeat Simple_repeat 1 49 0 1870 119 0 51 chr6 7909274 7909586 -174505656 + AluSx SINE Alu 1 296 -16 2361 230 51 24 chr6 7909842 7910581 -174504661 - L1M4 LINE L1 -1267 4879 4121 428 174 0 54 chr6 7910581 7910673 -174504569 - MER6 DNA MER2_type 0 865 58 988 162 18 0 chr6 7910687 7910854 -174504388 - AluJo SINE Alu -142 170 1 509 167 29 29 chr6 7910859 7910961 -174504281 + MER6 DNA MER2_type 43 865 0 1439 202 0 73 chr6 7910961 7911058 -174504184 - L1M4 LINE L1 -2024 4122 4020 2166 148 42 0 chr6 7911058 7911436 -174503806 - L1MB3 LINE L1 -7 6176 5783 1439 202 0 73 chr6 7911436 7911710 -174503532 - L1M4 LINE L1 -2126 4020 3778 * 1938 186 20 18 chr6 7911706 7912105 -174503137 - L1MB3 LINE L1 -1091 5055 4656 254 250 16 0 chr6 7912166 7912210 -174503032 + MER5B DNA MER1_type 1 48 -130 2198 117 0 0 chr6 7912210 7912517 -174502725 - AluSx SINE Alu -5 307 1 254 250 16 0 chr6 7912517 7912536 -174502706 + MER5B DNA MER1_type 48 65 -113 1892 115 59 3 chr6 7912623 7912911 -174502331 - AluSx SINE Alu -8 304 1 1911 139 0 32 chr6 7912937 7913253 -174501989 - AluSx SINE Alu 0 312 7 393 276 41 8 chr6 7913596 7913719 -174501523 + MIR SINE MIR 119 245 -17 1998 98 39 3 chr6 7914282 7914567 -174500675 - AluSx SINE Alu -17 295 1 1913 144 0 10 chr6 7914669 7914975 -174500267 + AluJb SINE Alu 1 303 -9 1662 177 0 7 chr6 7915117 7915411 -174499831 - AluJo SINE Alu -20 292 1 262 351 106 46 chr6 7915485 7915833 -174499409 + L2 LINE L2 2846 3214 -58 1792 164 0 6 chr6 7916502 7916813 -174498429 + AluJo SINE Alu 1 309 -3 217 278 37 0 chr6 7916997 7917051 -174498191 - L2 LINE L2 -9 3263 3208 4667 176 36 14 chr6 7917811 7919350 -174495892 - L1MB4 LINE L1 0 6180 4611 226 308 94 26 chr6 7919773 7919890 -174495352 - L2 LINE L2 -6 3307 3183 303 268 60 66 chr6 7920479 7920662 -174494580 + L2 LINE L2 2571 2752 -562 2533 133 3 8 chr6 7920830 7921221 -174494021 + MLT1B LTR MaLR 2 567 0 304 284 45 8 chr6 7921277 7921411 -174493831 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7921426 7921724 -174493518 - AluSx SINE Alu -14 298 1 247 275 37 64 chr6 7921848 7921957 -174493285 - MIR3 SINE MIR -14 194 89 250 286 57 0 chr6 7922140 7922210 -174493032 - MIR3 SINE MIR -23 185 112 231 114 227 0 chr6 7922238 7922282 -174492960 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7922548 7922592 -174492650 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7922593 7922715 -174492527 - FLAM_C SINE Alu -22 121 2 238 285 65 75 chr6 7922880 7923080 -174492162 - L2 LINE L2 -108 3164 2967 22 0 0 0 chr6 7923463 7923485 -174491757 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7923549 7923796 -174491446 + MER46B DNA MER2_type 14 154 -2577 16141 109 20 21 chr6 7923796 7926216 -174489026 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7926216 7926297 -174488945 + MER46B DNA MER2_type 154 230 -6 465 19 0 0 chr6 7926297 7926351 -174488891 + (TG)n Simple_repeat Simple_repeat 1 54 0 1194 182 11 58 chr6 7926367 7926642 -174488600 - AluJo SINE Alu -16 296 35 1870 112 6 98 chr6 7927111 7927449 -174487793 + AluSp SINE Alu 1 307 -6 216 321 98 16 chr6 7927692 7927938 -174487304 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7928269 7928568 -174486674 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7928569 7928881 -174486361 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7930174 7930441 -174484801 - AluJo SINE Alu -13 299 7 2155 119 27 0 chr6 7931043 7931336 -174483906 + AluSx SINE Alu 1 301 -11 423 298 53 0 chr6 7931338 7931452 -174483790 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7931452 7931644 -174483598 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7933135 7933332 -174481910 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7933332 7933476 -174481766 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7933476 7933767 -174481475 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7933767 7933944 -174481298 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7933944 7934458 -174480784 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7934534 7934838 -174480404 - AluJb SINE Alu -10 302 1 2117 145 0 3 chr6 7934919 7935223 -174480019 + AluSx SINE Alu 9 311 -1 253 136 34 0 chr6 7935223 7935277 -174479965 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7935277 7935445 -174479797 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7935445 7935575 -174479667 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7936297 7936517 -174478725 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7936651 7936947 -174478295 + AluSx SINE Alu 2 297 -15 635 128 0 149 chr6 7937009 7937150 -174478092 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7937641 7937857 -174477385 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7938347 7938401 -174476841 + MER5B DNA MER1_type 1 50 -128 1385 165 126 8 chr6 7938401 7938662 -174476580 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7938662 7938770 -174476472 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7938786 7938846 -174476396 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7939416 7939710 -174475532 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7940378 7940408 -174474834 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7940427 7940571 -174474671 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7940923 7941402 -174473840 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7941729 7941903 -174473339 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7941911 7942097 -174473145 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7942207 7942316 -174472926 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7942410 7942430 -174472812 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7944372 7944670 -174470572 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7945314 7945617 -174469625 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7946660 7946796 -174468446 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7947557 7947854 -174467388 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7947877 7948064 -174467178 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7948064 7948369 -174466873 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7948369 7948418 -174466824 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7949190 7949323 -174465919 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7949381 7949416 -174465826 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7950108 7950417 -174464825 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7951376 7951667 -174463575 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7951802 7951833 -174463409 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7951902 7952109 -174463133 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7952105 7952232 -174463010 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7952757 7953071 -174462171 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7953200 7953233 -174462009 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7954206 7954566 -174460676 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7954570 7954875 -174460367 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7955563 7955653 -174459589 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7955716 7955944 -174459298 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7956422 7957018 -174458224 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7957018 7957352 -174457890 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7957382 7957704 -174457538 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7957704 7957983 -174457259 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7957983 7958153 -174457089 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7959626 7959744 -174455498 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7959803 7959894 -174455348 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7959894 7960200 -174455042 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7960200 7960411 -174454831 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7960634 7960700 -174454542 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7960803 7961086 -174454156 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7961477 7961502 -174453740 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7961586 7961674 -174453568 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7961762 7962061 -174453181 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7963036 7963330 -174451912 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7963894 7964200 -174451042 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7965138 7965177 -174450065 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7965639 7965937 -174449305 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7966182 7966248 -174448994 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7966248 7966610 -174448632 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7966610 7966648 -174448594 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7967924 7967945 -174447297 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7969212 7969240 -174446002 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7969894 7969916 -174445326 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7970974 7971005 -174444237 + (T)n Simple_repeat Simple_repeat 1 31 0 181 319 111 28 chr6 7972228 7972372 -174442870 - L2 LINE L2 -193 3079 2924 190 331 140 0 chr6 7972612 7972748 -174442494 - L2 LINE L2 -685 2629 2475 21 57 0 0 chr6 7972871 7972906 -174442336 + AT_rich Low_complexity Low_complexity 1 35 0 429 227 31 10 chr6 7972999 7973096 -174442146 - MIR SINE MIR -116 146 48 1752 161 0 31 chr6 7973922 7974237 -174441005 - AluJo SINE Alu 0 306 1 2284 84 13 0 chr6 7974489 7974788 -174440454 + AluSg SINE Alu 2 304 -6 181 219 0 0 chr6 7975383 7975415 -174439827 - L2 LINE L2 -12 3260 3229 2476 61 3 0 chr6 7975653 7975949 -174439293 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7976251 7976302 -174438940 + polypurine Low_complexity Low_complexity 3 53 0 1708 147 0 55 chr6 7976543 7976855 -174438387 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7976863 7976885 -174438357 + AT_rich Low_complexity Low_complexity 1 22 0 2176 108 0 10 chr6 7977845 7978142 -174437100 + AluSx SINE Alu 1 294 -18 2313 98 0 23 chr6 7978778 7979085 -174436157 + AluSx SINE Alu 5 304 -8 455 151 54 0 chr6 7979532 7979625 -174435617 - L1MD3 LINE L1 0 7995 7898 786 154 0 16 chr6 7979637 7979760 -174435482 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7980583 7980627 -174434615 + (CA)n Simple_repeat Simple_repeat 2 45 0 1629 181 3 37 chr6 7981157 7981455 -174433787 - AluJo SINE Alu -24 288 1 926 201 81 54 chr6 7981687 7981946 -174433296 + L1MC4 LINE L1 7655 7920 -122 648 186 55 125 chr6 7981943 7982188 -174433054 + L1MC4 LINE L1 7827 8042 0 * 601 231 36 34 chr6 7983688 7983865 -174431377 - L1MD3 LINE L1 0 7983 6191 2404 109 0 0 chr6 7983898 7984210 -174431032 + AluSx SINE Alu 1 312 0 1662 156 34 30 chr6 7985008 7985303 -174429939 - AluJb SINE Alu -5 307 12 2109 123 0 7 chr6 7987451 7987752 -174427490 - AluSg SINE Alu -11 299 1 974 84 0 63 chr6 7990456 7990598 -174424644 - AluSq/x SINE Alu -180 133 1 1797 110 23 0 chr6 7991058 7991321 -174423921 + L1MA4 LINE L1 6027 6295 -5 2221 84 3 17 chr6 7991363 7991661 -174423581 + AluSx SINE Alu 1 294 -18 2324 87 3 19 chr6 7992187 7992498 -174422744 + L1PA13 LINE L1 5858 6163 0 1172 217 18 5 chr6 7993118 7993339 -174421903 - MER58A DNA MER1_type 0 224 1 2311 102 3 0 chr6 7996053 7996347 -174418895 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7997677 7997698 -174417544 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7998939 7999003 -174416239 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7999235 7999483 -174415759 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7999484 7999619 -174415623 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7999619 7999671 -174415571 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7999671 7999744 -174415498 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7999745 7999797 -174415445 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7999797 8000100 -174415142 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 8000100 8000537 -174414705 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 8001492 8001577 -174413665 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 8002390 8002756 -174412486 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 8003822 8003848 -174411394 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 8003852 8004122 -174411120 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 8004416 8004494 -174410748 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 8005522 8005651 -174409591 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 8008640 8008668 -174406574 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 8008668 8008757 -174406485 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 8014159 8014461 -174400781 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 8014830 8015127 -174400115 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 8015424 8016509 -174398733 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 8017196 8017497 -174397745 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 8018199 8018335 -174396907 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 8018616 8018965 -174396277 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 8018962 8019184 -174396058 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 8019232 8020081 -174395161 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 8020176 8020198 -174395044 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 8020986 8021198 -174394044 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 8021875 8021897 -174393345 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 8021904 8021981 -174393261 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 8022030 8022108 -174393134 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 8022482 8022777 -174392465 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 8023401 8023479 -174391763 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 8023567 8023721 -174391521 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 8024366 8024667 -174390575 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 8024713 8025012 -174390230 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 8025556 8025684 -174389558 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 8025799 8025950 -174389292 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 8028157 8028351 -174386891 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 8028351 8028653 -174386589 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 8028653 8028816 -174386426 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 8029484 8029681 -174385561 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 8030437 8030508 -174384734 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 8031373 8031745 -174383497 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 8032231 8032359 -174382883 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 8033013 8033066 -174382176 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 8033221 8033399 -174381843 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 8033537 8033825 -174381417 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 8033943 8034237 -174381005 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 8034775 8035085 -174380157 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 8035825 8035991 -174379251 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 8036181 8036202 -174379040 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 8036246 8036263 -174378979 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 8036263 8036611 -174378631 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 8036946 8037013 -174378229 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 8037324 8037409 -174377833 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 8037579 8037808 -174377434 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 8037857 8037972 -174377270 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 8039657 8039958 -174375284 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 8040033 8040381 -174374861 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 8040443 8040996 -174374246 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 8040996 8041290 -174373952 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 8041290 8041577 -174373665 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 8041584 8041705 -174373537 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 8041866 8042013 -174373229 + AluSg/x SINE Alu 151 297 -13 2382 295 188 22 chr6 8042245 8042866 -174372376 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 8042866 8043162 -174372080 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 8043162 8044096 -174371146 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 8045407 8045537 -174369705 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 8045582 8045774 -174369468 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 8045776 8045836 -174369406 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 8046242 8046366 -174368876 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 8046544 8046902 -174368340 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 8047500 8047611 -174367631 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 8047817 8047856 -174367386 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 8047860 8048133 -174367109 + AluJo SINE Alu 3 267 -45 965 270 9 0 chr6 8048487 8048709 -174366533 - MER58A DNA MER1_type 0 224 1 2213 122 3 0 chr6 8049748 8050052 -174365190 + AluSx SINE Alu 1 305 -7 2727 121 33 51 chr6 8051262 8051715 -174363527 + MER65A LTR ERV1 1 445 0 709 300 58 8 chr6 8051721 8051964 -174363278 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 8052326 8052381 -174362861 + T-rich Low_complexity Low_complexity 4 59 0 1826 166 13 7 chr6 8052383 8052685 -174362557 - AluSx SINE Alu -8 304 1 2051 138 0 16 chr6 8053104 8053422 -174361820 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 8053431 8053513 -174361729 + LTR67 LTR ERVL 98 177 -380 * 796 269 46 79 chr6 8053449 8053684 -174361558 + MLT1J LTR MaLR 110 326 -185 1517 210 119 44 chr6 8053684 8053751 -174361491 - MLT1C LTR MaLR -4 463 402 1575 66 0 0 chr6 8053751 8053934 -174361308 + AluY SINE Alu 1 183 -128 1517 210 119 44 chr6 8053934 8054295 -174360947 - MLT1C LTR MaLR -65 402 3 796 269 46 79 chr6 8054295 8054475 -174360767 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 8054479 8054537 -174360705 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2436 76 0 0 chr6 8054706 8055010 -174360232 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 8055163 8055227 -174360015 + GA-rich Low_complexity Low_complexity 1 63 0 1192 167 9 14 chr6 8056684 8056894 -174358348 + MLT1A1 LTR MaLR 18 226 -139 721 279 73 0 chr6 8056884 8057088 -174358154 - MER115 DNA AcHobo -467 226 8 * 1438 282 61 25 chr6 8058850 8059372 -174355870 + MLT1H1 LTR MaLR 15 555 0 198 103 0 0 chr6 8059743 8059772 -174355470 + (A)n Simple_repeat Simple_repeat 1 29 0 1976 120 14 3 chr6 8060403 8060687 -174354555 - AluSx SINE Alu -25 287 1 25 31 0 0 chr6 8061409 8061441 -174353801 + AT_rich Low_complexity Low_complexity 1 32 0 270 238 221 16 chr6 8061498 8061574 -174353668 - MIR SINE MIR -14 248 189 2231 81 7 0 chr6 8061574 8061858 -174353384 - AluY SINE Alu 0 311 26 270 238 221 16 chr6 8061858 8061903 -174353339 - MIR SINE MIR -73 189 102 357 278 90 47 chr6 8061905 8062117 -174353125 - MLT1K LTR MaLR -27 561 341 372 268 31 0 chr6 8062438 8062535 -174352707 - MIR SINE MIR -158 104 5 1277 109 0 0 chr6 8062570 8062735 -174352507 + AluSq SINE Alu 1 165 -148 819 268 180 42 chr6 8062818 8063341 -174351901 - MLT1G1 LTR MaLR 0 595 1 2609 108 19 95 chr6 8063610 8063856 -174351386 - MSTC LTR MaLR 0 428 232 2121 118 0 10 chr6 8063856 8064161 -174351081 + AluSc SINE Alu 1 302 -7 2609 108 19 95 chr6 8064161 8064377 -174350865 - MSTC LTR MaLR -196 232 1 1557 232 43 0 chr6 8064668 8064995 -174350247 - Tigger7 DNA MER2_type -391 342 2 2027 174 43 5 chr6 8064995 8065369 -174349873 + L1MB1 LINE L1 5781 6168 0 865 210 10 25 chr6 8066447 8066647 -174348595 - MLT1B LTR MaLR 0 390 194 2137 131 0 3 chr6 8067094 8067400 -174347842 + AluSx SINE Alu 1 305 -7 14006 120 53 39 chr6 8071040 8071596 -174343646 + Tigger1 DNA MER2_type 1 548 -1870 1785 142 55 0 chr6 8071596 8071871 -174343371 + AluJb SINE Alu 1 290 -22 14006 120 53 39 chr6 8071871 8072431 -174342811 + Tigger1 DNA MER2_type 548 1099 -1319 2536 61 0 3 chr6 8072431 8072742 -174342500 + AluY SINE Alu 2 311 0 14006 120 53 39 chr6 8072742 8073050 -174342192 + Tigger1 DNA MER2_type 1099 1401 -1017 2420 65 0 0 chr6 8073050 8073342 -174341900 + AluY SINE Alu 1 292 -19 14006 120 53 39 chr6 8073342 8074288 -174340954 + Tigger1 DNA MER2_type 1401 2405 -13 265 250 100 50 chr6 8075153 8075273 -174339969 + L2 LINE L2 3165 3290 -23 247 318 0 0 chr6 8075749 8075812 -174339430 - MLT1L LTR MaLR -552 63 1 655 194 215 26 chr6 8076068 8076259 -174338983 - MIR SINE MIR 0 262 36 443 193 73 0 chr6 8076372 8076484 -174338758 + L1MB7 LINE L1 6019 6158 -22 237 352 145 11 chr6 8076514 8076693 -174338549 + MIR SINE MIR 49 251 -11 2067 122 0 3 chr6 8076871 8077157 -174338085 + AluSg SINE Alu 16 300 -10 955 174 6 12 chr6 8077233 8077394 -174337848 + FRAM SINE Alu 1 155 -21 2619 48 0 3 chr6 8077402 8077711 -174337531 + AluY SINE Alu 1 308 -3 303 219 156 0 chr6 8077849 8077945 -174337297 - L2 LINE L2 -15 3298 3188 2148 119 3 0 chr6 8078908 8079203 -174336039 + AluSp SINE Alu 1 296 -17 416 209 37 4 chr6 8080817 8080954 -174334288 - MER5A DNA MER1_type 0 189 1 2310 91 0 36 chr6 8081349 8081657 -174333585 - AluSx SINE Alu -15 297 1 2390 74 10 0 chr6 8081726 8082023 -174333219 - AluSp SINE Alu -12 301 2 1990 189 64 11 chr6 8082535 8082975 -174332267 + L1MD2 LINE L1 5895 6357 -2 473 244 9 43 chr6 8083349 8083464 -174331778 + L2 LINE L2 3155 3265 -7 694 256 67 0 chr6 8083611 8083791 -174331451 + MIR SINE MIR 66 257 -5 1063 248 58 111 chr6 8084036 8084569 -174330673 - MER21B LTR ERV1 -335 528 24 1575 100 256 0 chr6 8084730 8085000 -174330242 + MER44D DNA MER2_type 1 609 0 33 43 0 0 chr6 8086599 8086646 -174328596 + AT_rich Low_complexity Low_complexity 1 47 0 446 278 85 14 chr6 8086725 8086943 -174328299 - L1ME LINE L1 -425 5745 5509 183 302 0 63 chr6 8087515 8087578 -174327664 + L2 LINE L2 2446 2504 -810 213 319 151 8 chr6 8087759 8087878 -174327364 + L2 LINE L2 2809 2944 -328 28 71 0 0 chr6 8088365 8088421 -174326821 + AT_rich Low_complexity Low_complexity 1 56 0 2162 109 13 10 chr6 8088549 8088852 -174326390 + AluSx SINE Alu 1 304 -8 610 359 106 21 chr6 8088960 8089578 -174325664 + L2 LINE L2 2447 3132 -181 261 254 0 0 chr6 8089578 8089637 -174325605 - MLT1E1 LTR MaLR 0 654 596 303 330 11 0 chr6 8089666 8089760 -174325482 - L2 LINE L2 -12 3301 3207 246 275 94 22 chr6 8090758 8090896 -174324346 - MLT1J LTR MaLR 0 511 364 959 154 0 0 chr6 8090965 8091108 -174324134 - AluJb SINE Alu -12 300 158 21 0 0 0 chr6 8091279 8091300 -174323942 + AT_rich Low_complexity Low_complexity 1 21 0 909 156 0 15 chr6 8091300 8091435 -174323807 - FLAM_C SINE Alu 0 133 1 267 276 0 0 chr6 8091437 8091495 -174323747 - MLT1J LTR MaLR -212 299 242 283 299 75 108 chr6 8091627 8091841 -174323401 - L2 LINE L2 -87 3185 2979 2352 100 0 6 chr6 8092427 8092738 -174322504 - AluSq SINE Alu -4 309 1 1948 177 74 26 chr6 8093438 8093816 -174321426 - MSTD LTR MaLR 0 396 1 2084 117 3 10 chr6 8094233 8094523 -174320719 - AluSx SINE Alu -24 288 1 372 320 73 21 chr6 8094857 8095091 -174320151 + HAL1b LINE L1 216 461 -887 252 301 44 44 chr6 8095103 8095239 -174320003 + HAL1b LINE L1 505 640 -708 472 241 63 44 chr6 8095620 8095778 -174319464 + MER46A DNA MER2_type 2 162 -74 3404 148 18 12 chr6 8095970 8096529 -174318713 - Tigger1 DNA MER2_type -2 2416 1855 799 91 50 0 chr6 8096521 8096642 -174318600 - Tigger1 DNA MER2_type -1895 523 397 * 11623 116 29 32 chr6 8096638 8096760 -174318482 - Tigger1 DNA MER2_type -557 1861 1740 2174 93 7 20 chr6 8096760 8097062 -174318180 - AluY SINE Alu -13 298 1 11623 116 29 32 chr6 8097062 8097409 -174317833 - Tigger1 DNA MER2_type -678 1740 1393 2540 27 20 3 chr6 8097409 8097703 -174317539 + AluY SINE Alu 4 302 -9 11623 116 29 32 chr6 8097703 8098474 -174316768 - Tigger1 DNA MER2_type -1025 1393 621 1968 99 8 0 chr6 8098474 8098727 -174316515 - AluSc SINE Alu -16 293 39 11623 116 29 32 chr6 8098727 8098770 -174316472 - Tigger1 DNA MER2_type -1797 621 579 2174 116 0 7 chr6 8098770 8099071 -174316171 + AluSx SINE Alu 3 301 -11 11623 116 29 32 chr6 8099071 8099629 -174315613 - Tigger1 DNA MER2_type -1839 579 24 217 300 0 0 chr6 8099651 8099663 -174315579 + (TA)n Simple_repeat Simple_repeat 1 12 -58 1988 140 3 3 chr6 8099663 8099955 -174315287 + AluJb SINE Alu 3 294 -18 217 300 0 0 chr6 8099955 8100012 -174315230 + (TA)n Simple_repeat Simple_repeat 11 70 0 233 309 41 0 chr6 8100067 8100164 -174315078 + L1MC4a LINE L1 6057 6157 -1651 2381 103 0 0 chr6 8100274 8100584 -174314658 - AluSq SINE Alu -3 310 1 291 54 0 0 chr6 8100595 8100632 -174314610 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 2236 110 13 3 chr6 8100634 8100942 -174314300 - AluSx SINE Alu -1 311 1 24 32 0 0 chr6 8101016 8101047 -174314195 + AT_rich Low_complexity Low_complexity 1 31 0 924 267 89 36 chr6 8101135 8101528 -174313714 + L1MC4a LINE L1 6502 6915 -893 897 185 11 85 chr6 8101569 8101829 -174313413 + L1MC5 LINE L1 6913 7153 -808 1314 230 54 16 chr6 8101841 8102228 -174313014 + L1MC5 LINE L1 7255 7656 -305 1291 157 0 0 chr6 8102270 8102461 -174312781 + AluJb SINE Alu 106 296 -16 360 0 0 0 chr6 8102472 8102512 -174312730 + (TG)n Simple_repeat Simple_repeat 1 40 0 1689 151 3 63 chr6 8102595 8102912 -174312330 + AluJo SINE Alu 7 304 -8 621 203 68 34 chr6 8102912 8103089 -174312153 + L1MC5 LINE L1 7718 7900 -61 2499 197 55 35 chr6 8103222 8103300 -174311942 - L1MD3 LINE L1 0 7995 7920 2844 79 6 6 chr6 8103300 8103653 -174311589 - THE1A LTR MaLR 0 355 3 12641 92 2 1 chr6 8103655 8105233 -174310009 - THE1A-int LTR MaLR 0 1580 1 2819 52 25 44 chr6 8105233 8105365 -174309877 - THE1A LTR MaLR 0 355 222 2396 95 0 7 chr6 8105365 8105671 -174309571 - AluSg SINE Alu -6 304 1 2819 52 25 44 chr6 8105671 8105900 -174309342 - THE1A LTR MaLR -133 222 1 2499 197 55 35 chr6 8105900 8106395 -174308847 - L1MD3 LINE L1 -74 7921 7406 232 229 0 0 chr6 8106421 8106469 -174308773 - MLT1F1 LTR MaLR -442 125 78 2685 204 14 40 chr6 8106514 8106920 -174308322 - MER68 LTR ERV1 0 562 174 1702 109 4 0 chr6 8106920 8107149 -174308093 + MER30 DNA MER1_type 1 230 0 2685 204 14 40 chr6 8107149 8107319 -174307923 - MER68 LTR ERV1 -388 174 1 2156 81 0 0 chr6 8107727 8108034 -174307208 + AluY SINE Alu 1 307 0 2344 102 0 0 chr6 8108061 8108366 -174306876 + AluY SINE Alu 1 305 -6 2080 119 7 3 chr6 8108801 8109095 -174306147 - AluSc SINE Alu -14 295 1 314 369 40 25 chr6 8109339 8109537 -174305705 - MIR SINE MIR -40 222 22 595 299 38 38 chr6 8109596 8109857 -174305385 + L2 LINE L2 2019 2279 -1035 475 267 7 15 chr6 8109844 8109979 -174305263 + L2 LINE L2 3180 3313 0 * 12949 168 87 21 chr6 8110081 8110889 -174304353 - L1MA4 LINE L1 0 6300 5546 2269 79 0 0 chr6 8110889 8111168 -174304074 + AluY SINE Alu 1 279 -32 207 0 0 0 chr6 8111170 8111193 -174304049 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 12949 168 87 21 chr6 8111193 8114134 -174301108 - L1MA4 LINE L1 -754 5546 2286 405 183 0 37 chr6 8114145 8114227 -174301015 + L1 LINE L1 2630 2708 -3438 383 113 126 24 chr6 8114232 8114315 -174300927 - L1M3f LINE L1 -3890 3675 3595 6899 124 25 25 chr6 8114329 8114348 -174300894 - L1P5 LINE L1 -664 5487 5470 4729 75 33 75 chr6 8114348 8115053 -174300189 - L1PB1 LINE L1 -7 6144 5470 * 11949 55 0 0 chr6 8115035 8117213 -174298029 - L1PA6 LINE L1 0 6154 3973 6899 124 25 25 chr6 8115053 8118794 -174296448 - L1P5 LINE L1 -681 5470 3889 1988 122 24 0 chr6 8118795 8119083 -174296159 - AluSq SINE Alu -18 295 1 6491 166 28 9 chr6 8119085 8119215 -174296027 - L1M3f LINE L1 -4158 2407 2281 2262 109 0 0 chr6 8119215 8119508 -174295734 + AluSg SINE Alu 1 293 -17 6491 166 28 9 chr6 8119508 8120522 -174294720 - L1M3f LINE L1 -4284 2281 1241 28 29 0 0 chr6 8121295 8121330 -174293912 + AT_rich Low_complexity Low_complexity 1 35 0 191 255 0 59 chr6 8121477 8121528 -174293714 - L2 LINE L2 -81 3191 3144 2221 90 38 0 chr6 8121833 8122121 -174293121 - AluSx SINE Alu -13 299 1 199 261 54 63 chr6 8122187 8122298 -174292944 - MIR SINE MIR -46 216 107 310 185 0 0 chr6 8122311 8122365 -174292877 + L2 LINE L2 3217 3270 -2 464 277 118 40 chr6 8122568 8122809 -174292433 + MIR SINE MIR 3 262 0 182 302 93 93 chr6 8124692 8124821 -174290421 + MIR SINE MIR 16 144 -64 2089 115 37 0 chr6 8125133 8125429 -174289813 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8125475 8125520 -174289722 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8125804 8125865 -174289377 + (CA)n Simple_repeat Simple_repeat 1 61 0 1777 99 0 0 chr6 8126068 8126291 -174288951 - AluSg/x SINE Alu -15 297 75 2860 6 0 0 chr6 8126789 8127100 -174288142 + AluYa5 SINE Alu 1 311 0 922 153 74 60 chr6 8127315 8127531 -174287711 - MER20 DNA MER1_type 0 219 1 3051 164 7 17 chr6 8127909 8128038 -174287204 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8128038 8128356 -174286886 - AluSq SINE Alu -2 311 1 3051 164 7 17 chr6 8128356 8128811 -174286431 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8129536 8129558 -174285684 + AT_rich Low_complexity Low_complexity 1 22 0 2318 100 0 3 chr6 8130103 8130403 -174284839 + AluSq SINE Alu 1 299 -14 384 294 110 35 chr6 8130918 8131146 -174284096 - MIR SINE MIR -16 246 2 247 357 56 16 chr6 8131827 8131953 -174283289 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8132265 8132291 -174282951 + (TG)n Simple_repeat Simple_repeat 2 27 0 725 96 0 0 chr6 8132291 8132385 -174282857 - AluSg/x SINE Alu -26 283 190 1960 122 16 48 chr6 8132773 8133084 -174282158 - AluSx SINE Alu -7 305 5 2183 125 0 0 chr6 8133334 8133629 -174281613 - AluSx SINE Alu -17 295 1 2232 119 0 0 chr6 8135099 8135394 -174279848 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8136368 8136412 -174278830 + AT_rich Low_complexity Low_complexity 1 44 0 2260 132 0 0 chr6 8136429 8136740 -174278502 - AluSx SINE Alu -1 311 1 459 273 76 41 chr6 8136970 8137314 -174277928 - L1MEd LINE L1 -3316 2813 2458 226 109 0 43 chr6 8137335 8137381 -174277861 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 376 303 116 49 chr6 8137381 8137505 -174277737 - L1MEd LINE L1 -3792 2367 2253 2396 75 0 3 chr6 8137505 8137799 -174277443 + AluSc SINE Alu 1 293 -16 376 303 116 49 chr6 8137799 8138006 -174277236 - L1MEd LINE L1 -3906 2253 2017 961 264 71 43 chr6 8138295 8139125 -174276117 - L1MEd LINE L1 -4752 1558 660 185 204 68 0 chr6 8139444 8139488 -174275754 + L2 LINE L2 361 407 -2907 790 243 129 38 chr6 8139513 8139854 -174275388 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8140721 8140744 -174274498 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1644 99 0 0 chr6 8141025 8141237 -174274005 - AluSq SINE Alu -6 307 96 705 188 0 15 chr6 8141251 8141384 -174273858 - AluSp SINE Alu -182 131 1 649 117 27 0 chr6 8142086 8142197 -174273045 + L1MA7 LINE L1 6173 6286 -5 908 135 0 0 chr6 8142202 8142328 -174272914 + FLAM_C SINE Alu 2 127 -6 24 32 0 0 chr6 8143148 8143179 -174272063 + AT_rich Low_complexity Low_complexity 1 31 0 2083 119 16 19 chr6 8143671 8143982 -174271260 + AluSx SINE Alu 1 310 -2 1226 95 105 0 chr6 8145384 8145574 -174269668 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8146843 8146867 -174268375 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8147038 8147096 -174268146 + CT-rich Low_complexity Low_complexity 5 62 0 1338 265 164 20 chr6 8147770 8148367 -174266875 + L2 LINE L2 1662 2344 -970 536 134 34 92 chr6 8148356 8148475 -174266767 + MIR SINE MIR 106 217 -45 * 2404 84 0 3 chr6 8149663 8149961 -174265281 + AluSc SINE Alu 1 297 -12 565 121 33 11 chr6 8150686 8150777 -174264465 + AluJo SINE Alu 42 134 -178 362 303 117 6 chr6 8152138 8152300 -174262942 - MIR SINE MIR -10 252 73 487 314 100 18 chr6 8152314 8152534 -174262708 + MIR SINE MIR 15 252 -10 513 301 159 40 chr6 8153737 8153769 -174261473 + MIR SINE MIR 3 30 -232 2147 137 0 0 chr6 8153769 8154075 -174261167 + AluSx SINE Alu 1 306 -6 513 301 159 40 chr6 8154075 8154268 -174260974 + MIR SINE MIR 30 255 -7 186 333 137 39 chr6 8154313 8154466 -174260776 - MIR SINE MIR -60 202 35 1957 153 13 7 chr6 8155002 8155310 -174259932 - AluJo SINE Alu -2 310 1 539 280 125 25 chr6 8155804 8156125 -174259117 + L1MC4a LINE L1 5540 5892 -1916 2356 79 10 0 chr6 8156297 8156589 -174258653 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8158123 8158174 -174257068 + AT_rich Low_complexity Low_complexity 1 51 0 862 194 0 0 chr6 8158247 8158407 -174256835 + MER3 DNA MER1_type 1 160 -49 2297 106 3 3 chr6 8158578 8158889 -174256353 + AluSq SINE Alu 1 311 -2 2399 77 3 6 chr6 8163584 8163897 -174251345 - AluSp SINE Alu -1 312 1 384 298 17 15 chr6 8164133 8164274 -174250968 + MIR3 SINE MIR 56 196 -12 357 255 99 99 chr6 8164971 8165293 -174249949 + L1ME3A LINE L1 560 881 -5189 382 226 20 92 chr6 8165297 8165427 -174249815 + L1ME3A LINE L1 898 882 -5096 2281 117 3 0 chr6 8165427 8165734 -174249508 + AluSx SINE Alu 1 308 -4 382 226 20 92 chr6 8165734 8165939 -174249303 + L1ME3A LINE L1 881 1099 -4879 503 314 173 7 chr6 8166031 8166331 -174248911 + L1ME3A LINE L1 1377 1685 -838 2158 112 7 0 chr6 8166499 8166794 -174248448 - AluSx SINE Alu -15 297 1 2309 103 3 6 chr6 8167045 8167356 -174247886 - AluSp SINE Alu -3 310 1 1392 255 129 68 chr6 8167373 8168662 -174246580 + L1ME3A LINE L1 2150 3516 -2564 1481 268 66 29 chr6 8168670 8169229 -174246013 - MLT1E LTR MaLR -13 580 1 431 233 74 81 chr6 8169231 8169502 -174245740 + L1ME3A LINE L1 3513 3781 -2299 * 1658 254 46 65 chr6 8169501 8170342 -174244900 + L1ME3A LINE L1 5227 6051 -53 218 414 69 0 chr6 8170373 8170489 -174244753 - L2 LINE L2 -28 3244 3121 2550 148 16 20 chr6 8170619 8171066 -174244176 + MER65A LTR ERV1 1 445 0 2684 102 53 12 chr6 8171100 8171511 -174243731 - MSTA LTR MaLR 0 428 1 2218 129 0 0 chr6 8172020 8172330 -174242912 + AluSx SINE Alu 1 310 -2 1694 180 32 0 chr6 8172334 8172645 -174242597 + MLT1A1 LTR MaLR 45 365 0 265 294 92 9 chr6 8173254 8173363 -174241879 + MER94 DNA DNA 16 133 -1 2580 155 42 13 chr6 8175038 8175510 -174239732 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8175989 8176060 -174239182 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8176060 8176367 -174238875 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8176367 8176620 -174238622 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8177652 8177687 -174237555 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8178008 8178437 -174236805 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8178899 8179117 -174236125 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8179105 8179621 -174235621 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8180296 8180334 -174234908 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8180416 8180689 -174234553 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8181003 8181034 -174234208 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8182093 8182200 -174233042 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8182321 8182398 -174232844 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8182806 8183086 -174232156 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8183088 8183266 -174231976 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8183292 8183626 -174231616 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8183922 8184065 -174231177 - L1ME2 LINE L1 -2 6332 6022 2056 208 20 20 chr6 8184067 8184523 -174230719 - L1ME2 LINE L1 -239 5925 5470 21 0 0 0 chr6 8184594 8184615 -174230627 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8184617 8184925 -174230317 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8185647 8185921 -174229321 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8185921 8186205 -174229037 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8186205 8186393 -174228849 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8186393 8186647 -174228595 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8186683 8186850 -174228392 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8186889 8187020 -174228222 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8187027 8187174 -174228068 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8187334 8187377 -174227865 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8187437 8187465 -174227777 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8187465 8187539 -174227703 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8187539 8187816 -174227426 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8187817 8187854 -174227388 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8187854 8188209 -174227033 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8188209 8188521 -174226721 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8188521 8188766 -174226476 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8188766 8188970 -174226272 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8189563 8189857 -174225385 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8190535 8190851 -174224391 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8191198 8191235 -174224007 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8191235 8191545 -174223697 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8191545 8192007 -174223235 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8192456 8192607 -174222635 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8192618 8192654 -174222588 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8192681 8192978 -174222264 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8193071 8193217 -174222025 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8193313 8193469 -174221773 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8193539 8193841 -174221401 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8194632 8194800 -174220442 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8195005 8195033 -174220209 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8195034 8195305 -174219937 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8196347 8196374 -174218868 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8196671 8196956 -174218286 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8197297 8197421 -174217821 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8197584 8197709 -174217533 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8198958 8199274 -174215968 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8199330 8199360 -174215882 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8200298 8200368 -174214874 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8200373 8206477 -174208765 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8206477 8206791 -174208451 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8206900 8207042 -174208200 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8207394 8207553 -174207689 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8207808 8208241 -174207001 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8208282 8208319 -174206923 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8208989 8209169 -174206073 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8211047 8211113 -174204129 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8211263 8211569 -174203673 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8211678 8211973 -174203269 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8212878 8213187 -174202055 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8213298 8213320 -174201922 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8213884 8214187 -174201055 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8214497 8214856 -174200386 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8215859 8216305 -174198937 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8216351 8216507 -174198735 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8216656 8216817 -174198425 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8216812 8217193 -174198049 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8217450 8217488 -174197754 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8217842 8223968 -174191274 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8223974 8224159 -174191083 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8224159 8224186 -174191056 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8224186 8225887 -174189355 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8225946 8226068 -174189174 - MIR SINE MIR -126 136 12 339 211 220 29 chr6 8226092 8226284 -174188958 - L1P4 LINE L1 -370 5796 5572 3968 127 29 8 chr6 8226396 8227012 -174188230 + Tigger2 DNA MER2_type 126 754 -1964 1453 141 24 0 chr6 8227069 8227318 -174187924 + Tigger2 DNA MER2_type 2461 2715 -3 252 143 0 0 chr6 8227318 8227360 -174187882 + (TG)n Simple_repeat Simple_repeat 1 42 0 440 249 67 0 chr6 8227360 8227464 -174187778 + L1MC4 LINE L1 6571 6660 -1125 277 355 81 24 chr6 8227546 8227975 -174187267 - L2 LINE L2 -289 2983 2533 3883 263 72 77 chr6 8228089 8229876 -174185366 + L2 LINE L2 1011 2787 -527 848 283 123 23 chr6 8229901 8230251 -174184991 + L2 LINE L2 2925 3309 -4 226 276 71 0 chr6 8230425 8230523 -174184719 - MER103 DNA DNA -3 163 59 2127 149 3 0 chr6 8230604 8230906 -174184336 + AluSq SINE Alu 1 303 -10 253 268 89 71 chr6 8231461 8231573 -174183669 - MER5B DNA MER1_type -60 118 5 2294 107 0 0 chr6 8232824 8233114 -174182128 + AluSg SINE Alu 1 290 -20 229 219 0 109 chr6 8233282 8233308 -174181934 - L2 LINE L2 0 3272 3245 2300 138 36 17 chr6 8233308 8233664 -174181578 - THE1B LTR MaLR -1 363 1 229 219 0 109 chr6 8233664 8233701 -174181541 - L2 LINE L2 -27 3245 3216 474 297 141 47 chr6 8234171 8234937 -174180305 - L2 LINE L2 -1 3312 2462 563 155 0 0 chr6 8234980 8235064 -174180178 + AluS SINE Alu 2 85 -227 871 286 205 9 chr6 8235074 8235640 -174179602 - L2 LINE L2 -856 2458 1782 277 254 45 55 chr6 8235646 8235756 -174179486 - L2 LINE L2 -1639 1675 1567 1839 191 60 35 chr6 8235758 8236240 -174179002 - MLT1D LTR MaLR -2 503 10 1049 312 204 32 chr6 8236308 8237473 -174177769 - L2 LINE L2 -1842 1472 107 193 367 20 10 chr6 8237728 8237826 -174177416 - L2 LINE L2 -798 2516 2418 200 248 0 70 chr6 8238749 8238878 -174176364 + G-rich Low_complexity Low_complexity 3 122 0 24 32 0 0 chr6 8238979 8239010 -174176232 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr6 8239014 8239034 -174176208 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr6 8239220 8239249 -174175993 + GC_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr6 8239382 8239432 -174175810 + GC_rich Low_complexity Low_complexity 1 50 0 1586 185 3 52 chr6 8240804 8241128 -174174114 - AluJo SINE Alu 0 312 5 2458 83 0 0 chr6 8241366 8241666 -174173576 - AluSc SINE Alu -8 301 2 2280 110 3 7 chr6 8243108 8243416 -174171826 - AluSg SINE Alu -3 307 1 1821 151 17 17 chr6 8243423 8243714 -174171528 - AluJo SINE Alu -21 291 1 294 289 103 57 chr6 8244430 8244693 -174170549 - L2 LINE L2 -189 3083 2809 1959 175 62 27 chr6 8247371 8247822 -174167420 - MLT1C LTR MaLR 0 467 1 1692 179 49 9 chr6 8248713 8249059 -174166183 + MLT1A1 LTR MaLR 6 365 0 312 70 0 0 chr6 8250106 8250149 -174165093 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2084 123 24 0 chr6 8251312 8251604 -174163638 + AluSq SINE Alu 1 299 -14 352 298 50 73 chr6 8252514 8252816 -174162426 - L1ME LINE L1 -316 5805 5511 1592 153 15 23 chr6 8253669 8253930 -174161312 - AluJo SINE Alu -24 288 30 634 184 0 0 chr6 8253931 8254029 -174161213 - AluJ/FLAM SINE Alu -213 99 2 1122 163 62 15 chr6 8254843 8255195 -174160047 + Tigger1 DNA MER2_type 1 2418 0 1396 184 93 25 chr6 8255272 8255550 -174159692 + AluJb SINE Alu 5 301 -11 274 250 133 39 chr6 8256598 8256726 -174158516 - L1ME3A LINE L1 0 6170 6031 2352 94 57 23 chr6 8256798 8257150 -174158092 - THE1B LTR MaLR 0 364 1 1425 264 82 23 chr6 8257209 8257781 -174157461 - L1MC5 LINE L1 -429 7532 6927 265 352 193 0 chr6 8258788 8258933 -174156309 + MIR SINE MIR 77 249 -13 284 298 128 21 chr6 8261509 8261650 -174153592 - L2 LINE L2 0 3313 3158 293 284 60 66 chr6 8264219 8264356 -174150886 + MIR SINE MIR 15 149 -61 287 313 36 27 chr6 8266006 8266118 -174149124 + MER5A DNA MER1_type 6 118 -71 412 304 56 0 chr6 8269763 8269888 -174145354 - MIR SINE MIR -111 151 20 211 246 148 0 chr6 8270645 8270706 -174144536 - L2 LINE L2 0 3313 3244 193 319 42 59 chr6 8271708 8271827 -174143415 - L2 LINE L2 -562 2752 2636 2301 111 0 3 chr6 8272028 8272325 -174142917 - AluSx SINE Alu -12 300 5 220 0 0 79 chr6 8272732 8272770 -174142472 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 382 281 130 54 chr6 8272770 8273024 -174142218 + L1MEd LINE L1 849 3293 -2836 522 269 75 36 chr6 8273044 8273415 -174141827 + L1MEd LINE L1 967 1398 -4869 2793 196 12 55 chr6 8273929 8273991 -174141251 + MLT2B3 LTR ERVL 1 64 -490 1664 181 36 0 chr6 8273991 8274272 -174140970 - AluJo SINE Alu -20 292 2 2793 196 12 55 chr6 8274272 8274786 -174140456 + MLT2B3 LTR ERVL 64 552 -2 382 343 29 43 chr6 8274838 8274884 -174140358 - L2 LINE L2 -228 3085 3040 1789 140 29 32 chr6 8274884 8275192 -174140050 - AluJo SINE Alu -5 307 1 382 343 29 43 chr6 8275192 8275355 -174139887 - L2 LINE L2 -273 3040 2879 637 210 40 65 chr6 8275357 8275605 -174139637 + MLT1J2 LTR MaLR 20 261 -189 1509 252 81 76 chr6 8275867 8276560 -174138682 + MER21B LTR ERV1 13 712 -151 1814 193 23 0 chr6 8276560 8276865 -174138377 + AluJo SINE Alu 1 312 0 1509 252 81 76 chr6 8276865 8276912 -174138330 + MER21B LTR ERV1 712 757 -106 221 300 38 12 chr6 8277724 8277804 -174137438 + MER5A DNA MER1_type 43 124 -65 2108 104 7 4 chr6 8278737 8279017 -174136225 + AluSx SINE Alu 1 281 -31 203 81 54 0 chr6 8280763 8280800 -174134442 + GA-rich Low_complexity Low_complexity 5 43 0 2181 121 7 3 chr6 8282494 8282800 -174132442 + AluSq SINE Alu 1 307 -6 298 254 239 0 chr6 8285246 8285376 -174129866 - MIR SINE MIR -18 244 84 1989 131 28 3 chr6 8285639 8285929 -174129313 - AluSx SINE Alu -15 297 1 1000 276 97 23 chr6 8286021 8286368 -174128874 + MLT1K LTR MaLR 114 502 -86 2424 94 0 0 chr6 8286368 8286677 -174128565 + AluY SINE Alu 1 309 -2 1000 276 97 23 chr6 8286677 8286771 -174128471 + MLT1K LTR MaLR 502 588 0 417 95 0 0 chr6 8288561 8288624 -174126618 - Alu SINE Alu -10 302 240 287 288 12 62 chr6 8289414 8289574 -174125668 - MIR SINE MIR -50 212 61 198 280 174 8 chr6 8290952 8291084 -174124158 - MIR SINE MIR -62 200 47 1877 161 0 7 chr6 8291281 8291579 -174123663 + AluJb SINE Alu 1 296 -16 2861 3 0 0 chr6 8292770 8293070 -174122172 + AluYa5 SINE Alu 1 300 -11 234 0 0 0 chr6 8293521 8293547 -174121695 + (T)n Simple_repeat Simple_repeat 1 26 0 679 148 60 176 chr6 8293709 8293839 -174121403 - MIR SINE MIR -22 240 151 1558 142 127 0 chr6 8293839 8294107 -174121135 + AluJb SINE Alu 1 302 0 679 148 60 176 chr6 8294107 8294226 -174121016 - MIR SINE MIR -111 151 20 1042 164 22 6 chr6 8294230 8294413 -174120829 - MER5A DNA MER1_type 0 189 4 1982 128 24 0 chr6 8294861 8295149 -174120093 - AluSx SINE Alu -17 295 1 225 125 0 42 chr6 8295321 8295369 -174119873 - L1MA3 LINE L1 0 6305 6260 23 54 0 0 chr6 8297044 8297081 -174118161 + AT_rich Low_complexity Low_complexity 1 37 0 1747 172 3 17 chr6 8297081 8297372 -174117870 - AluJo SINE Alu -24 288 2 2886 232 90 28 chr6 8297707 8298813 -174116429 + L1MB3 LINE L1 3757 4931 -1215 328 198 37 0 chr6 8299248 8299329 -174115913 + L1MB4 LINE L1 6096 6179 -1 1373 93 0 0 chr6 8299350 8299533 -174115709 + AluY SINE Alu 129 311 0 293 235 0 0 chr6 8299734 8299802 -174115440 + HsTC2 DNA Tc2 232 299 -1599 * 671 302 90 18 chr6 8299790 8300177 -174115065 + HsTC2 DNA Tc2 477 891 -1007 1116 241 122 105 chr6 8300959 8301666 -174113576 - LTR8A LTR ERV1 -7 720 2 1289 193 35 0 chr6 8305354 8305608 -174109634 + L1MA9 LINE L1 5728 5990 -322 808 113 60 65 chr6 8305612 8305780 -174109462 + L1MA9 LINE L1 6146 6312 0 249 108 0 0 chr6 8306206 8306243 -174108999 + (A)n Simple_repeat Simple_repeat 1 37 0 613 225 86 91 chr6 8307016 8307546 -174107696 + MLT1F1 LTR MaLR 84 567 0 3642 161 24 5 chr6 8309695 8310333 -174104909 + L1MB3 LINE L1 5490 6139 -44 937 164 7 0 chr6 8310335 8310481 -174104761 + FRAM SINE Alu 1 146 -30 259 231 13 128 chr6 8310625 8310701 -174104541 + L1M4 LINE L1 3964 4014 -2132 2701 40 0 0 chr6 8310701 8311003 -174104239 - AluY SINE Alu -9 302 1 259 231 13 128 chr6 8311003 8311082 -174104160 + L1M4 LINE L1 4014 4101 -2045 1719 145 59 31 chr6 8311288 8311612 -174103630 - MER44D DNA MER2_type -6 603 1 423 293 114 37 chr6 8311669 8311868 -174103374 - L1M4 LINE L1 -2575 3571 3336 2144 105 19 0 chr6 8311868 8312183 -174103059 - L1PB1 LINE L1 -3 6148 5828 423 293 114 37 chr6 8312183 8312307 -174102935 - L1M4 LINE L1 -2810 3336 3223 1042 230 21 60 chr6 8313011 8313346 -174101896 - L1MD2 LINE L1 -10 6349 6028 21 0 0 0 chr6 8313443 8313464 -174101778 + AT_rich Low_complexity Low_complexity 1 21 0 2157 106 10 13 chr6 8313526 8313828 -174101414 + AluSx SINE Alu 1 301 -11 2160 61 82 0 chr6 8314265 8314544 -174100698 + AluY SINE Alu 1 302 -9 383 303 65 40 chr6 8314689 8314966 -174100276 - L1MEd LINE L1 -4888 1231 948 675 156 22 59 chr6 8314971 8315106 -174100136 - FLAM_A SINE Alu 0 133 4 183 244 39 102 chr6 8315912 8316039 -174099203 - MIR SINE MIR -50 212 94 765 230 73 0 chr6 8316318 8316509 -174098733 - MER3 DNA MER1_type 0 209 5 1982 122 101 18 chr6 8317096 8317433 -174097809 - MLT1A1 LTR MaLR 0 365 1 279 296 136 16 chr6 8317609 8317734 -174097508 + L2 LINE L2 3126 3265 -7 2806 171 29 11 chr6 8318186 8318712 -174096530 - L1MB5 LINE L1 0 6174 5640 2309 130 37 8 chr6 8318739 8319093 -174096149 + THE1B LTR MaLR 1 364 0 297 173 0 0 chr6 8319281 8319333 -174095909 + L2 LINE L2 3254 3305 -8 1838 164 0 7 chr6 8319948 8320241 -174095001 - AluJo SINE Alu -21 291 1 234 227 0 0 chr6 8320351 8320395 -174094847 + GA-rich Low_complexity Low_complexity 2 45 0 361 271 41 16 chr6 8320918 8321040 -174094202 + L2 LINE L2 3142 3266 -6 2311 105 3 6 chr6 8323911 8324224 -174091018 - AluSq SINE Alu -1 312 1 1241 191 160 11 chr6 8324364 8324626 -174090616 - AluJo SINE Alu 0 302 2 930 269 66 48 chr6 8325453 8326216 -174089026 + L2 LINE L2 2451 3228 -85 387 0 0 0 chr6 8326720 8326763 -174088479 + (CA)n Simple_repeat Simple_repeat 2 44 0 2296 96 3 0 chr6 8327343 8327635 -174087607 + AluSq SINE Alu 3 295 -18 367 363 28 14 chr6 8327854 8328066 -174087176 - MIR SINE MIR -2 260 46 657 116 132 25 chr6 8328137 8328258 -174086984 - AluJb SINE Alu -178 134 1 1970 156 9 18 chr6 8328579 8328918 -174086324 + MER1B DNA MER1_type 2 337 0 229 333 0 13 chr6 8330089 8330164 -174085078 + CT-rich Low_complexity Low_complexity 2 75 0 252 163 41 20 chr6 8330393 8330442 -174084800 + MER81 DNA DNA 65 114 0 238 256 12 24 chr6 8331746 8331828 -174083414 + MIR3 SINE MIR 119 199 -9 3094 43 3 0 chr6 8331925 8332297 -174082945 - L1PA5 LINE L1 -1 6153 5781 272 341 110 18 chr6 8333191 8333355 -174081887 + MIR SINE MIR 13 191 -71 21 82 0 0 chr6 8333946 8333995 -174081247 + AT_rich Low_complexity Low_complexity 1 49 0 437 255 221 5 chr6 8334151 8334355 -174080887 - MIR SINE MIR -13 249 2 1661 68 18 5 chr6 8334674 8334893 -174080349 - L1PA8 LINE L1 -11 6161 5940 1378 169 94 87 chr6 8335302 8335704 -174079538 + MLT1E2 LTR MaLR 11 415 -211 1850 148 3 67 chr6 8335990 8336321 -174078921 - AluJo SINE Alu -2 310 1 405 0 0 0 chr6 8336511 8336556 -174078686 + (TA)n Simple_repeat Simple_repeat 2 46 0 582 179 188 0 chr6 8336556 8336673 -174078569 - FLAM_C SINE Alu -3 140 2 328 274 53 46 chr6 8339214 8339372 -174075870 + MIR3 SINE MIR 42 203 -5 1923 166 3 3 chr6 8340725 8341032 -174074210 - AluJo SINE Alu -5 307 1 2643 59 0 0 chr6 8341444 8341750 -174073492 + AluY SINE Alu 1 306 -5 1011 154 5 56 chr6 8341950 8342085 -174073157 - MER5A DNA MER1_type -4 185 60 1872 105 56 0 chr6 8342085 8342389 -174072853 + AluSq SINE Alu 1 319 0 1011 154 5 56 chr6 8342389 8342447 -174072795 - MER5A DNA MER1_type -129 60 1 258 312 18 9 chr6 8342621 8342730 -174072512 + L3b LINE CR1 1391 1500 -83 215 0 67 0 chr6 8343045 8343075 -174072167 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 265 315 99 0 chr6 8344923 8345034 -174070208 + L2 LINE L2 3151 3272 0 202 132 0 26 chr6 8345245 8345283 -174069959 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 623 204 34 28 chr6 8345771 8345947 -174069295 - MER104 DNA MER2_type 0 180 4 185 290 192 27 chr6 8346291 8346515 -174068727 + L2 LINE L2 2715 2975 -339 254 333 106 22 chr6 8346586 8346766 -174068476 + L2 LINE L2 3119 3313 0 387 0 0 0 chr6 8349541 8349584 -174065658 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 255 128 11 chr6 8350084 8350178 -174065064 - MIR3 SINE MIR -11 197 93 262 312 21 0 chr6 8351246 8351339 -174063903 + MIR3 SINE MIR 81 175 -33 489 344 98 15 chr6 8353567 8354108 -174061134 + L2 LINE L2 2174 2759 -555 298 224 109 68 chr6 8354823 8354970 -174060272 + MIR SINE MIR 23 175 -87 1465 150 38 23 chr6 8355042 8355308 -174059934 - AluJo SINE Alu -8 304 35 3245 159 19 9 chr6 8355951 8356524 -174058718 - L1MC1 LINE L1 0 6333 5755 1704 177 75 42 chr6 8357273 8357629 -174057613 + MLT2C1 LTR ERVL 1 372 -25 432 0 0 0 chr6 8357629 8357677 -174057565 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8357677 8357704 -174057538 + MLT2C1 LTR ERVL 372 397 0 226 333 118 36 chr6 8357774 8358267 -174056975 - L2 LINE L2 -738 2576 2044 1908 157 10 10 chr6 8359119 8359431 -174055811 - AluJb SINE Alu 0 312 1 389 269 0 37 chr6 8360298 8360406 -174054836 + Charlie2 DNA MER1_type 44 147 -2635 459 245 0 0 chr6 8360463 8360561 -174054681 + L1MA9 LINE L1 6003 6100 -212 616 175 71 0 chr6 8360562 8360688 -174054554 + L1MA9 LINE L1 6178 6312 0 276 264 176 39 chr6 8360901 8361083 -174054159 + Charlie2a DNA MER1_type 1457 1663 -1199 189 0 0 0 chr6 8363182 8363203 -174052039 + (A)n Simple_repeat Simple_repeat 1 21 0 224 269 0 0 chr6 8365199 8365266 -174049976 + (CA)n Simple_repeat Simple_repeat 2 68 0 225 200 40 0 chr6 8366326 8366376 -174048866 - MIR SINE MIR -55 207 156 827 294 127 52 chr6 8366393 8366932 -174048310 + L2 LINE L2 1603 2100 -1214 1883 149 30 3 chr6 8366932 8367233 -174048009 - AluSx SINE Alu -1 311 3 827 294 127 52 chr6 8367233 8367670 -174047572 + L2 LINE L2 2100 2652 -662 452 267 0 46 chr6 8368343 8368474 -174046768 + MIR SINE MIR 63 187 -75 1954 132 11 0 chr6 8368653 8368970 -174046272 + AluJb SINE Alu 1 320 0 2336 88 0 3 chr6 8369103 8369398 -174045844 - AluSq SINE Alu -19 294 1 2311 83 0 29 chr6 8370024 8370337 -174044905 + AluSq SINE Alu 1 304 -9 237 302 147 16 chr6 8370893 8371022 -174044220 + MIR3 SINE MIR 60 205 -3 596 274 78 4 chr6 8371154 8371384 -174043858 + MIR SINE MIR 14 260 -2 719 221 0 0 chr6 8372868 8372995 -174042247 + FRAM SINE Alu 20 146 -30 257 135 0 0 chr6 8373657 8373694 -174041548 - 5S rRNA rRNA -83 38 2 2198 156 15 51 chr6 8374474 8374885 -174040357 + MSTD LTR MaLR 1 396 0 895 155 61 0 chr6 8374949 8375097 -174040145 - AluSg/x SINE Alu -22 290 134 2147 117 0 7 chr6 8375097 8375396 -174039846 - AluSx SINE Alu -15 297 1 2439 87 6 3 chr6 8377582 8377893 -174037349 - AluSx SINE Alu 0 312 1 543 277 19 13 chr6 8378049 8378204 -174037038 + MIR SINE MIR 23 178 -84 201 296 0 0 chr6 8378427 8378471 -174036771 - MIR SINE MIR 0 262 219 453 242 73 0 chr6 8378732 8378856 -174036386 - MER5B DNA MER1_type -45 133 1 277 290 106 37 chr6 8378879 8379016 -174036226 - MER5A DNA MER1_type -29 160 7 519 199 133 20 chr6 8380223 8380374 -174034868 - MER5B DNA MER1_type -10 168 1 2910 174 66 62 chr6 8381218 8381973 -174033269 + L1MCa LINE L1 186 943 -5483 224 250 77 29 chr6 8382138 8382242 -174033000 + MER5A DNA MER1_type 81 189 0 2254 76 42 0 chr6 8382391 8382679 -174032563 + AluY SINE Alu 2 301 -10 206 32 32 0 chr6 8382687 8382718 -174032524 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1938 161 3 19 chr6 8383016 8383333 -174031909 - AluJo SINE Alu 0 312 1 1766 196 136 7 chr6 8383593 8384011 -174031231 + MLT1D LTR MaLR 27 498 -7 708 195 0 0 chr6 8384884 8385007 -174030235 + FLAM_A SINE Alu 1 123 -10 2133 107 0 73 chr6 8387442 8387769 -174027473 + AluSx SINE Alu 1 303 -9 270 325 0 90 chr6 8387782 8387982 -174027260 - L2 LINE L2 -86 3186 3005 2189 106 0 3 chr6 8388896 8389210 -174026032 + AluSx SINE Alu 1 313 0 929 193 31 0 chr6 8389438 8389599 -174025643 + FRAM SINE Alu 1 166 0 2313 119 0 3 chr6 8389658 8389969 -174025273 + AluSx SINE Alu 1 310 -2 334 275 138 14 chr6 8390102 8390240 -174025002 - MIR3 SINE MIR -21 187 33 335 313 71 0 chr6 8390620 8390719 -174024523 - L2 LINE L2 -43 3229 3124 1926 184 115 12 chr6 8392049 8392468 -174022774 + MLT1C LTR MaLR 6 467 0 5356 244 63 43 chr6 8392516 8393453 -174021789 + L1MEc LINE L1 246 1163 -5052 180 0 0 0 chr6 8393453 8393473 -174021769 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 8393473 8394647 -174020595 + L1MEc LINE L1 1163 2312 -3903 2309 94 0 3 chr6 8394647 8394954 -174020288 + AluY SINE Alu 3 308 -3 5356 244 63 43 chr6 8394954 8395254 -174019988 + L1MEc LINE L1 2312 2604 -3611 1805 158 30 0 chr6 8395254 8395557 -174019685 + AluJo SINE Alu 1 312 0 5356 244 63 43 chr6 8395557 8395887 -174019355 + L1MEc LINE L1 2604 3035 -3180 360 246 246 0 chr6 8396156 8396298 -174018944 - MER5A DNA MER1_type 0 189 13 765 230 133 5 chr6 8397356 8397552 -174017690 + MER58A DNA MER1_type 4 224 0 286 269 101 40 chr6 8397552 8397701 -174017541 + L3 LINE CR1 1306 1463 -114 378 306 8 8 chr6 8399711 8399835 -174015407 + MER5A DNA MER1_type 1 124 -65 193 331 192 0 chr6 8399750 8399880 -174015362 - MER5A DNA MER1_type -28 161 7 * 539 280 70 0 chr6 8401345 8401545 -174013697 - MIR SINE MIR -16 246 33 1581 219 164 39 chr6 8401626 8401717 -174013525 - MLT1E2 LTR MaLR 0 626 548 1998 143 3 0 chr6 8401717 8402011 -174013231 + AluJb SINE Alu 1 295 -17 1581 219 164 39 chr6 8402011 8402431 -174012811 - MLT1E2 LTR MaLR -78 548 51 196 374 32 11 chr6 8403257 8403447 -174011795 + L2 LINE L2 2657 2850 -464 1102 129 13 0 chr6 8403686 8403841 -174011401 - AluSq SINE Alu -20 293 137 1675 175 15 4 chr6 8404092 8404366 -174010876 + AluJo SINE Alu 1 277 -35 919 260 115 41 chr6 8404554 8404973 -174010269 + L1ME LINE L1 1 450 -5620 627 216 58 0 chr6 8404965 8405104 -174010138 + L1ME2 LINE L1 6008 6154 -10 * 1946 115 39 0 chr6 8405177 8405456 -174009786 - AluSx SINE Alu -20 292 3 298 193 35 153 chr6 8405458 8405660 -174009582 + L1MC4 LINE L1 7864 8041 -1 951 127 0 0 chr6 8407930 8408056 -174007186 + FLAM_C SINE Alu 1 126 -17 1735 149 14 11 chr6 8408066 8408347 -174006895 + AluJo SINE Alu 1 282 -30 213 39 0 0 chr6 8408353 8408379 -174006863 + (TAA)n Simple_repeat Simple_repeat 2 27 0 187 206 330 10 chr6 8408955 8409052 -174006190 + MER5A DNA MER1_type 16 143 -46 * 473 248 115 49 chr6 8409045 8409331 -174005911 + MER5C DNA MER1_type 20 324 0 227 303 0 0 chr6 8410847 8410923 -174004319 + L1ME1 LINE L1 6046 6121 -45 395 281 131 11 chr6 8411044 8411304 -174003938 - LTR33A LTR ERVL -2 521 231 209 217 0 0 chr6 8411674 8411720 -174003522 + A-rich Low_complexity Low_complexity 1 46 0 203 267 0 0 chr6 8412001 8412046 -174003196 + GA-rich Low_complexity Low_complexity 1 45 0 2212 106 7 0 chr6 8412465 8412757 -174002485 - AluSx SINE Alu -18 294 1 1504 161 28 46 chr6 8413766 8414090 -174001152 + L1MC1 LINE L1 6016 6333 0 184 220 40 0 chr6 8415348 8415398 -173999844 + MIR3 SINE MIR 153 204 -4 1996 128 0 29 chr6 8416457 8416763 -173998479 + AluSx SINE Alu 1 297 -15 389 308 69 47 chr6 8418073 8418349 -173996893 - L2 LINE L2 -27 3286 3005 363 166 78 181 chr6 8419605 8419658 -173995584 - MER5B DNA MER1_type 0 178 121 592 212 0 38 chr6 8419658 8419790 -173995452 + FLAM_A SINE Alu 1 127 -6 363 166 78 181 chr6 8419790 8419929 -173995313 - MER5B DNA MER1_type -57 121 6 433 268 28 56 chr6 8419993 8420172 -173995070 - MER5B DNA MER1_type 0 178 5 207 333 0 0 chr6 8420320 8420383 -173994859 + G-rich Low_complexity Low_complexity 1 63 0 26 88 0 0 chr6 8421792 8421860 -173993382 + GC_rich Low_complexity Low_complexity 1 68 0 222 62 0 0 chr6 8422352 8422384 -173992858 + (CTG)n Simple_repeat Simple_repeat 3 34 0 185 160 0 20 chr6 8422521 8422571 -173992671 + (CGG)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr6 8423416 8423438 -173991804 + GC_rich Low_complexity Low_complexity 1 22 0 2360 133 17 0 chr6 8425268 8425622 -173989620 + MER46B DNA MER2_type 2 236 0 189 107 0 0 chr6 8425656 8425684 -173989558 + (CA)n Simple_repeat Simple_repeat 2 29 0 1727 120 7 80 chr6 8427029 8427328 -173987914 + AluJb SINE Alu 24 300 -12 321 175 225 33 chr6 8428374 8428494 -173986748 - L2 LINE L2 0 3313 3171 1220 248 45 7 chr6 8428550 8428869 -173986373 + MLT1E2 LTR MaLR 271 626 0 767 269 88 30 chr6 8428879 8429184 -173986058 - L2 LINE L2 -173 3140 2818 988 238 71 29 chr6 8429270 8429581 -173985661 + L1ME3A LINE L1 5842 6165 -5 715 281 32 32 chr6 8429621 8429867 -173985375 - L2 LINE L2 -551 2763 2518 1880 79 0 0 chr6 8430253 8430482 -173984760 - AluY SINE Alu -1 310 82 1014 197 56 16 chr6 8430511 8430760 -173984482 + L1MC3 LINE L1 7527 7785 0 2229 116 3 0 chr6 8430842 8431136 -173984106 + AluSq SINE Alu 1 295 -18 3845 204 61 75 chr6 8431375 8431673 -173983569 - L1MDa LINE L1 -4085 2455 2154 2093 138 0 3 chr6 8431673 8431969 -173983273 - AluJb SINE Alu -17 295 1 3845 204 61 75 chr6 8431969 8432133 -173983109 - L1MDa LINE L1 -4386 2154 1989 2947 6 0 0 chr6 8432133 8432444 -173982798 - AluY SINE Alu 0 311 1 3845 204 61 75 chr6 8432444 8433146 -173982096 - L1MDa LINE L1 -4551 1989 1310 1242 63 0 0 chr6 8433146 8433304 -173981938 - L1PA3 LINE L1 0 6155 5998 3845 204 61 75 chr6 8433304 8433503 -173981739 - L1MDa LINE L1 -5230 1310 1110 * 5730 136 42 2 chr6 8433496 8434400 -173980842 - L1MC1 LINE L1 0 6333 5394 2004 179 6 0 chr6 8434400 8434757 -173980485 - L1MDa LINE L1 -5392 1151 793 362 171 13 13 chr6 8435239 8435315 -173979927 + L2 LINE L2 3238 3313 0 261 271 60 53 chr6 8436335 8436468 -173978774 - L2 LINE L2 -7 3265 3132 373 248 108 8 chr6 8436665 8436794 -173978448 - L2 LINE L2 -14 3299 3158 1523 317 125 29 chr6 8436822 8438082 -173977160 - L2 LINE L2 -276 2996 1618 1995 268 50 23 chr6 8438227 8438790 -173976452 + MLT1E LTR MaLR 16 593 0 1803 185 22 27 chr6 8439583 8439950 -173975292 + MLT1A1 LTR MaLR 1 365 0 1210 102 81 106 chr6 8440784 8440865 -173974377 + MER30 DNA MER1_type 1 83 -147 2501 57 3 0 chr6 8440865 8441162 -173974080 + AluY SINE Alu 1 298 -13 1210 102 81 106 chr6 8441162 8441316 -173973926 + MER30 DNA MER1_type 83 230 0 206 299 26 0 chr6 8441945 8442022 -173973220 - L2 LINE L2 -300 2972 2894 217 340 212 17 chr6 8442130 8443012 -173972230 - L2 LINE L2 -551 2763 1710 1852 154 0 29 chr6 8444045 8444374 -173970868 + AluJo SINE Alu 1 312 0 1624 196 27 46 chr6 8444420 8444462 -173970780 - MLT1A1 LTR MaLR 0 365 324 2331 84 0 47 chr6 8444462 8444783 -173970459 + AluSq SINE Alu 1 306 -7 1624 196 27 46 chr6 8444783 8445108 -173970134 - MLT1A1 LTR MaLR -41 324 5 300 291 78 28 chr6 8445508 8445649 -173969593 + L2 LINE L2 2922 3069 -203 281 247 0 67 chr6 8446116 8446205 -173969037 + MIR SINE MIR 109 191 -71 985 203 98 51 chr6 8447525 8447745 -173967497 - L1ME3A LINE L1 0 6170 5931 2089 150 129 5 chr6 8447745 8448126 -173967116 + MSTA LTR MaLR 1 428 0 985 203 98 51 chr6 8448126 8448200 -173967042 - L1ME3A LINE L1 -239 5931 5862 371 269 23 0 chr6 8448672 8448776 -173966466 + MIR SINE MIR 45 151 -57 2366 108 0 0 chr6 8449160 8449467 -173965775 - AluSx SINE Alu -5 307 1 2302 139 21 10 chr6 8449604 8450149 -173965093 - LTR51 LTR ERV1 0 671 73 2231 115 3 0 chr6 8450149 8450453 -173964789 - AluSg SINE Alu -5 305 1 2302 139 21 10 chr6 8450453 8450527 -173964715 - LTR51 LTR ERV1 -598 73 1 26 0 0 0 chr6 8450696 8450722 -173964520 + AT_rich Low_complexity Low_complexity 1 26 0 193 305 203 34 chr6 8452144 8452262 -173962980 - L2 LINE L2 -2 3270 3133 2273 116 3 0 chr6 8452387 8452690 -173962552 + AluSx SINE Alu 1 304 -8 681 200 0 24 chr6 8453904 8454029 -173961213 + AluJb SINE Alu 7 128 -184 363 158 29 14 chr6 8454066 8454205 -173961037 + (TA)n Simple_repeat Simple_repeat 2 142 0 1737 144 0 4 chr6 8454477 8454733 -173960509 + AluJb SINE Alu 1 255 -57 616 174 9 17 chr6 8454737 8454852 -173960390 - ORSL DNA AcHobo -11 264 151 339 106 0 0 chr6 8454869 8454916 -173960326 + AluJb SINE Alu 252 298 -4 849 239 36 54 chr6 8455082 8455362 -173959880 + ORSL DNA AcHobo 1 275 0 205 371 57 9 chr6 8455515 8455620 -173959622 + L2 LINE L2 3159 3268 -4 1336 158 4 58 chr6 8455638 8455898 -173959344 + AluJo SINE Alu 52 297 -15 367 322 90 6 chr6 8456003 8456180 -173959062 + MIR SINE MIR 46 237 -25 327 338 52 0 chr6 8456345 8456481 -173958761 + MIR SINE MIR 47 189 -73 375 23 0 0 chr6 8456766 8456810 -173958432 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2305 98 3 13 chr6 8457892 8458208 -173957034 + AluSq SINE Alu 1 313 0 183 235 0 0 chr6 8458242 8458293 -173956949 + G-rich Low_complexity Low_complexity 3 53 0 250 282 0 68 chr6 8458360 8458406 -173956836 + LTR67 LTR ERVL 444 539 -18 284 211 18 0 chr6 8458406 8458463 -173956779 + MLT1K LTR MaLR 511 568 -20 331 309 133 24 chr6 8459060 8459225 -173956017 + MIR3 SINE MIR 21 203 -5 808 176 150 31 chr6 8460507 8460626 -173954616 + L1ME3A LINE L1 5904 6007 -163 1890 167 6 3 chr6 8460626 8460937 -173954305 - AluJb SINE Alu 0 312 1 808 176 150 31 chr6 8460937 8461044 -173954198 + L1ME3A LINE L1 6007 6157 -13 2842 230 56 6 chr6 8461172 8461847 -173953395 - L1ME1 LINE L1 -17 6149 5441 21 0 0 0 chr6 8462678 8462699 -173952543 + AT_rich Low_complexity Low_complexity 1 21 0 675 190 8 0 chr6 8462699 8462820 -173952422 - FLAM_C SINE Alu -11 122 1 1165 136 44 29 chr6 8463653 8463859 -173951383 - MER3 DNA MER1_type 0 209 1 1403 145 5 5 chr6 8464641 8464855 -173950387 - AluJo SINE Alu -13 299 86 190 242 97 16 chr6 8465136 8465198 -173950044 - MIR SINE MIR -84 124 58 248 310 106 21 chr6 8465487 8465629 -173949613 - MIR3 SINE MIR -23 185 32 837 174 43 31 chr6 8465747 8465908 -173949334 - FRAM SINE Alu -3 163 1 185 0 0 39 chr6 8466156 8466182 -173949060 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2095 104 21 7 chr6 8466193 8466480 -173948762 - AluSq SINE Alu -22 291 1 180 143 0 0 chr6 8468390 8468432 -173946810 + (A)n Simple_repeat Simple_repeat 1 42 0 3695 143 50 16 chr6 8468668 8469282 -173945960 + MER41B LTR ERV1 1 635 0 241 326 7 43 chr6 8469813 8469951 -173945291 + L2 LINE L2 3133 3265 -7 457 261 48 30 chr6 8470023 8470188 -173945054 - MIR3 SINE MIR -3 205 38 2310 115 0 0 chr6 8470378 8470683 -173944559 + AluSx SINE Alu 1 305 -7 2317 171 23 0 chr6 8472045 8472085 -173943157 - MLT2D LTR ERVL -12 402 364 823 85 15 0 chr6 8472085 8472215 -173943027 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 8472215 8472567 -173942675 - MLT2D LTR ERVL -50 364 1 2372 108 0 6 chr6 8473198 8473512 -173941730 + AluSx SINE Alu 1 312 0 346 274 170 72 chr6 8473794 8474195 -173941047 + MLT1J2 LTR MaLR 2 441 -9 2368 104 0 0 chr6 8474623 8474921 -173940321 + AluSq SINE Alu 1 298 -15 1086 257 105 34 chr6 8474923 8475495 -173939747 - MLT2F LTR ERVL -12 651 2 371 259 94 55 chr6 8475572 8475773 -173939469 + L2 LINE L2 3088 3296 -17 369 253 205 18 chr6 8475993 8476159 -173939083 - MIR SINE MIR -16 246 50 227 306 47 24 chr6 8476713 8476798 -173938444 + MIR SINE MIR 29 115 -147 1946 165 30 12 chr6 8478709 8479116 -173936126 + MLT1B LTR MaLR 5 433 -34 984 189 28 18 chr6 8479619 8479836 -173935406 + MER20 DNA MER1_type 1 219 0 1111 142 11 11 chr6 8479905 8480095 -173935147 - AluJo SINE Alu -1 311 122 833 148 0 15 chr6 8480144 8480279 -173934963 - AluJo SINE Alu -169 133 1 1743 176 47 52 chr6 8480280 8480667 -173934575 + MLT1B LTR MaLR 6 390 0 1409 110 8 55 chr6 8480676 8480913 -173934329 - MLT1B LTR MaLR -161 229 4 286 296 46 9 chr6 8481448 8481556 -173933686 - MLT1L LTR MaLR -8 607 496 456 271 30 15 chr6 8481690 8481823 -173933419 - MLT1L LTR MaLR -353 262 128 506 289 11 42 chr6 8482066 8482256 -173932986 + ERVL LTR ERVL 10 193 -4803 2001 160 31 0 chr6 8482827 8483146 -173932096 + MER7A DNA MER2_type 1 327 -19 299 211 26 0 chr6 8483163 8483239 -173932003 - L1M4 LINE L1 -1052 5094 5017 799 157 0 15 chr6 8483395 8483529 -173931713 + FLAM_C SINE Alu 1 132 -1 1384 86 50 10 chr6 8483543 8483741 -173931501 + AluSg/x SINE Alu 89 294 -16 282 230 54 0 chr6 8483830 8483904 -173931338 - L1P LINE L1 -2366 3780 3703 2224 152 38 47 chr6 8484026 8484719 -173930523 + L1MB8 LINE L1 4871 5572 -606 3840 89 10 43 chr6 8484720 8484916 -173930326 - L1PA16 LINE L1 -1 6165 5964 1839 181 3 0 chr6 8484916 8485219 -173930023 - AluJo SINE Alu -8 304 1 3840 89 10 43 chr6 8485219 8485609 -173929633 - L1PA16 LINE L1 -202 5964 5598 6071 178 17 12 chr6 8485633 8486062 -173929180 - L1P4 LINE L1 -545 5621 5196 2030 132 17 7 chr6 8486062 8486357 -173928885 - AluSq SINE Alu -15 298 1 6071 178 17 12 chr6 8486357 8487500 -173927742 - L1P4 LINE L1 -970 5196 4040 3251 183 13 7 chr6 8487505 8488116 -173927126 + L1MB8 LINE L1 5562 6176 -2 2301 270 91 19 chr6 8488138 8489859 -173925383 + ERVL LTR ERVL 401 2331 -2665 759 293 21 45 chr6 8489864 8489954 -173925288 + ERVL LTR ERVL 2489 2580 -2416 2196 120 13 0 chr6 8489954 8490255 -173924987 + AluSx SINE Alu 1 305 -7 759 293 21 45 chr6 8490255 8490271 -173924971 + ERVL LTR ERVL 2580 2595 -2401 2874 122 7 23 chr6 8490271 8490705 -173924537 + MSTC LTR MaLR 2 428 0 759 293 21 45 chr6 8490705 8490887 -173924355 + ERVL LTR ERVL 2595 2771 -2225 * 1394 331 58 36 chr6 8490882 8491787 -173923455 + ERVL LTR ERVL 4144 5067 -697 1013 214 117 16 chr6 8492192 8492509 -173922733 + LTR16A LTR ERVL 66 414 -36 1495 262 97 68 chr6 8492582 8493205 -173922037 + HAL1 LINE L1 1668 2322 -185 2096 117 3 22 chr6 8493205 8493521 -173921721 - AluSx SINE Alu -2 310 1 1495 262 97 68 chr6 8493521 8493710 -173921532 + HAL1 LINE L1 2322 2504 -3 2286 113 3 0 chr6 8493735 8494046 -173921196 + AluSp SINE Alu 2 313 0 847 218 0 0 chr6 8494431 8494578 -173920664 + FRAM SINE Alu 1 146 -30 1162 265 31 55 chr6 8494617 8494716 -173920526 - L1MC5 LINE L1 -90 7871 7771 1718 182 0 7 chr6 8494716 8495013 -173920229 - AluJb SINE Alu -17 295 1 1162 265 31 55 chr6 8495013 8495495 -173919747 - L1MC5 LINE L1 -190 7771 7304 331 269 195 62 chr6 8495790 8496047 -173919195 + MLT1H-int LTR MaLR 1074 1364 -7 694 264 184 48 chr6 8496083 8496393 -173918849 + MLT1H LTR MaLR 43 394 -173 299 181 162 29 chr6 8496461 8496566 -173918676 - L1MC5 LINE L1 -734 7227 7109 375 231 103 17 chr6 8496629 8496746 -173918496 - L1MC5 LINE L1 -853 7108 6982 957 248 16 33 chr6 8496775 8497081 -173918161 - L1MC4 LINE L1 -954 7088 6788 1393 60 0 0 chr6 8497277 8497443 -173917799 + AluSg/x SINE Alu 136 301 -11 465 276 0 98 chr6 8497594 8497768 -173917474 - MER5B DNA MER1_type -21 157 1 349 319 88 0 chr6 8499304 8499417 -173915825 + MER20B DNA MER1_type 53 175 -608 2623 62 0 0 chr6 8500610 8500918 -173914324 + AluY SINE Alu 1 308 -3 390 243 81 27 chr6 8503125 8503336 -173911906 + LTR16C LTR ERVL 169 448 -43 589 279 86 72 chr6 8503390 8503752 -173911490 - MLT1K LTR MaLR -2 586 220 471 270 30 69 chr6 8504380 8504613 -173910629 - MLT1K LTR MaLR -5 583 360 462 298 62 22 chr6 8504718 8504896 -173910346 - MLT1K LTR MaLR -397 191 7 2285 75 7 0 chr6 8505582 8505896 -173909346 + AluSp SINE Alu 5 320 0 1836 173 43 3 chr6 8506177 8506506 -173908736 + MER2 DNA MER2_type 1 342 -2 1976 118 7 28 chr6 8507035 8507349 -173907893 + AluSq SINE Alu 1 308 0 2034 117 47 0 chr6 8507349 8507648 -173907594 + AluSq SINE Alu 1 313 0 1757 261 29 2 chr6 8508305 8508722 -173906520 + MER70B LTR ERVL 4 431 -147 277 319 0 0 chr6 8508847 8508919 -173906323 + (CA)n Simple_repeat Simple_repeat 1 72 0 2341 69 0 0 chr6 8509097 8509372 -173905870 + AluY SINE Alu 22 296 -15 802 205 27 32 chr6 8509757 8509942 -173905300 + MLT1A2 LTR MaLR 1 184 -190 1965 162 51 14 chr6 8560112 8560464 -173854778 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8560606 8560704 -173854538 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8561095 8561397 -173853845 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8561666 8561755 -173853487 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8561882 8561904 -173853338 + AT_rich Low_complexity Low_complexity 1 22 0 365 258 117 75 chr6 8561913 8562030 -173853212 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8562030 8562324 -173852918 - AluSx SINE Alu -19 293 1 365 258 117 75 chr6 8562324 8562540 -173852702 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8562541 8562813 -173852429 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8562906 8563335 -173851907 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8563444 8563719 -173851523 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8563731 8563761 -173851481 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8564086 8564195 -173851047 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8564797 8564860 -173850382 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8564890 8564919 -173850323 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8565328 8565388 -173849854 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8566346 8566643 -173848599 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8566931 8567000 -173848242 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8567162 8567304 -173847938 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8567418 8567690 -173847552 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8567690 8567977 -173847265 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8567977 8568018 -173847224 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8568027 8568116 -173847126 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8568116 8568229 -173847013 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8568348 8568371 -173846871 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8568620 8569062 -173846180 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8569169 8569469 -173845773 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8569469 8569509 -173845733 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8569554 8569597 -173845645 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8569641 8569749 -173845493 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8570047 8570257 -173844985 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8570888 8570928 -173844314 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8571526 8571556 -173843686 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8572317 8573499 -173841743 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8573607 8573756 -173841486 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8574439 8574609 -173840633 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8574609 8574900 -173840342 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8574900 8575062 -173840180 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8575157 8575508 -173839734 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8575508 8575867 -173839375 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8575867 8575980 -173839262 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8575986 8576266 -173838976 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8576299 8576554 -173838688 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8576673 8576775 -173838467 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8577129 8577275 -173837967 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8577984 8578029 -173837213 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8578097 8578428 -173836814 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8578453 8578626 -173836616 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8578629 8578686 -173836556 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8579021 8579370 -173835872 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8579404 8579593 -173835649 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8579597 8579684 -173835558 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8579754 8579908 -173835334 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8579936 8580099 -173835143 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8580462 8580781 -173834461 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8581576 8581737 -173833505 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8581821 8581910 -173833332 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8582022 8582089 -173833153 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8582106 8582400 -173832842 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8582822 8583342 -173831900 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8583344 8583629 -173831613 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8583804 8584122 -173831120 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8584348 8584461 -173830781 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8584461 8584772 -173830470 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8584772 8584874 -173830368 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8585155 8585451 -173829791 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8585457 8585594 -173829648 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8585613 8585909 -173829333 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8586095 8586194 -173829048 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8586194 8586499 -173828743 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8586499 8586583 -173828659 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8586585 8586889 -173828353 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8587231 8587526 -173827716 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8587951 8588060 -173827182 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8588634 8588671 -173826571 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8588733 8588923 -173826319 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8588923 8589310 -173825932 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8589310 8589336 -173825906 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8589336 8589635 -173825607 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8589635 8589680 -173825562 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8589680 8590040 -173825202 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8590040 8590334 -173824908 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8590334 8590404 -173824838 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8590404 8590558 -173824684 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8590591 8590654 -173824588 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8590660 8590949 -173824293 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8592061 8592350 -173822892 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8592367 8592616 -173822626 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8592609 8592627 -173822615 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8592627 8592779 -173822463 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8592779 8593039 -173822203 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8593039 8593099 -173822143 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8593397 8593652 -173821590 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8593766 8594082 -173821160 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8594239 8595006 -173820236 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8595063 8595181 -173820061 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8595375 8595680 -173819562 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8596252 8596554 -173818688 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8596598 8596863 -173818379 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8597193 8597410 -173817832 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8597442 8597489 -173817753 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8597491 8597598 -173817644 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8598348 8598641 -173816601 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8598944 8598993 -173816249 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8599021 8599144 -173816098 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8600421 8600813 -173814429 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8600902 8601186 -173814056 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8601446 8601700 -173813542 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8602068 8602360 -173812882 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8602447 8602579 -173812663 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8602586 8602650 -173812592 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8602684 8603061 -173812181 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8603061 8603369 -173811873 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8603369 8603611 -173811631 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8603718 8603857 -173811385 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8603919 8603989 -173811253 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8604384 8604692 -173810550 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8606092 8606203 -173809039 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8606211 8606288 -173808954 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8606366 8606642 -173808600 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8606722 8606849 -173808393 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8607910 8608220 -173807022 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8608639 8608682 -173806560 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8608711 8608746 -173806496 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8608928 8609003 -173806239 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8610522 8610829 -173804413 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8610945 8610966 -173804276 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8610966 8610987 -173804255 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8611764 8612060 -173803182 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8612340 8612389 -173802853 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8612456 8612589 -173802653 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8612687 8612707 -173802535 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8612707 8613007 -173802235 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8613007 8613023 -173802219 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8613159 8613272 -173801970 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8614672 8614703 -173800539 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8615756 8615886 -173799356 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8615886 8615906 -173799336 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8615965 8616119 -173799123 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8616927 8617216 -173798026 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8617216 8617509 -173797733 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8617509 8617660 -173797582 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8618943 8618982 -173796260 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8618982 8619027 -173796215 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8619027 8619450 -173795792 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8619732 8619815 -173795427 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8619815 8620100 -173795142 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8620100 8620152 -173795090 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8620593 8620737 -173794505 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8620738 8620894 -173794348 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8622300 8622544 -173792698 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8622544 8622856 -173792386 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8622856 8623110 -173792132 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8623223 8623442 -173791800 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8624275 8624404 -173790838 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8624450 8625024 -173790218 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8625030 8625151 -173790091 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8625151 8625904 -173789338 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8625950 8626498 -173788744 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8626505 8627144 -173788098 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8627144 8627451 -173787791 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8627451 8628534 -173786708 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8629172 8629488 -173785754 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8629851 8630274 -173784968 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8630385 8630684 -173784558 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8630758 8631087 -173784155 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8631336 8631455 -173783787 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8631455 8631724 -173783518 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8631724 8631763 -173783479 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8631816 8632126 -173783116 - AluSx SINE Alu -3 309 1 4395 132 97 128 chr6 8632376 8633599 -173781643 + pTR5 LTR ERV1 738 2219 -219 2963 13 0 0 chr6 8633599 8633917 -173781325 + AluYb8 SINE Alu 1 318 0 4395 132 97 128 chr6 8633917 8634131 -173781111 + pTR5 LTR ERV1 2219 2438 0 221 314 23 12 chr6 8634204 8634290 -173780952 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8634822 8634857 -173780385 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 195 213 66 33 chr6 8635006 8635067 -173780175 - L2 LINE L2 0 3313 3251 1447 242 114 39 chr6 8635966 8636429 -173778813 - MLT1D LTR MaLR -7 498 1 431 304 59 42 chr6 8636428 8636665 -173778577 + MER112 DNA MER1_type 2 242 -18 * 182 376 0 40 chr6 8637912 8638013 -173777229 + MIR3 SINE MIR 62 158 -50 2444 64 0 3 chr6 8638021 8638318 -173776924 - AluY SINE Alu -14 297 2 2627 65 0 0 chr6 8639433 8639740 -173775502 + AluY SINE Alu 1 307 -4 5792 147 83 53 chr6 8640184 8641091 -173774151 - Tigger3b DNA MER2_type -1797 1231 279 2307 102 3 0 chr6 8641091 8641395 -173773847 + AluSq SINE Alu 1 305 -8 5792 147 83 53 chr6 8641395 8641673 -173773569 - Tigger3b DNA MER2_type -2749 279 11 2206 102 0 22 chr6 8641674 8641987 -173773255 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8642354 8642385 -173772857 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 981 277 81 22 chr6 8642387 8642982 -173772260 - L2 LINE L2 -10 3303 2679 1265 259 88 46 chr6 8643404 8643697 -173771545 - L1ME3A LINE L1 -268 5902 5623 1522 183 29 26 chr6 8643697 8644008 -173771234 - AluJo SINE Alu 0 312 1 1265 259 88 46 chr6 8644008 8644612 -173770630 - L1ME3A LINE L1 -547 5623 4962 336 204 9 19 chr6 8644617 8644725 -173770517 + CT-rich Low_complexity Low_complexity 3 109 0 466 214 172 0 chr6 8644874 8645019 -173770223 - MER5B DNA MER1_type 0 178 9 598 268 13 0 chr6 8645063 8645220 -173770022 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8645246 8645320 -173769922 + (TA)n Simple_repeat Simple_repeat 1 76 0 1688 115 93 22 chr6 8645320 8645589 -173769653 - AluSx SINE Alu -24 288 1 342 276 58 63 chr6 8646578 8646752 -173768490 - MIR SINE MIR -70 192 20 1992 148 0 10 chr6 8646967 8647264 -173767978 - AluJb SINE Alu -16 296 3 310 377 52 7 chr6 8647555 8647709 -173767533 - L2 LINE L2 0 3272 3112 239 309 140 11 chr6 8649103 8649281 -173765961 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8649500 8649711 -173765531 + CT-rich Low_complexity Low_complexity 1 211 0 2163 180 46 58 chr6 8650486 8651052 -173764190 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8653130 8653138 -173762104 + (TA)n Simple_repeat Simple_repeat 1 8 -62 849 109 8 0 chr6 8653138 8653257 -173761985 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8653257 8653319 -173761923 + (TA)n Simple_repeat Simple_repeat 8 70 0 2532 26 0 48 chr6 8653320 8653631 -173761611 - AluY SINE Alu -15 296 1 6036 107 4 13 chr6 8653634 8654312 -173760930 - L1PA11 LINE L1 -110 6064 5381 2559 68 0 0 chr6 8654312 8654623 -173760619 - AluY SINE Alu 0 311 1 6036 107 4 13 chr6 8654623 8655382 -173759860 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8655382 8655412 -173759830 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8656680 8656770 -173758472 + GA-rich Low_complexity Low_complexity 2 89 0 1945 158 37 23 chr6 8657101 8657455 -173757787 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8658112 8658156 -173757086 + AT_rich Low_complexity Low_complexity 1 44 0 2198 117 0 7 chr6 8658296 8658594 -173756648 - AluSx SINE Alu -16 296 1 2232 218 16 20 chr6 8658603 8659153 -173756089 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8659156 8659188 -173756054 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1985 140 0 0 chr6 8659188 8659467 -173755775 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8660922 8661069 -173754173 + GA-rich Low_complexity Low_complexity 4 151 0 2588 124 15 106 chr6 8661334 8661566 -173753676 + MER4B LTR ERV1 1 253 -526 2379 98 23 0 chr6 8661566 8661871 -173753371 + AluSx SINE Alu 1 312 0 2588 124 15 106 chr6 8661871 8662313 -173752929 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8664488 8664516 -173750726 + AT_rich Low_complexity Low_complexity 1 28 0 2330 123 27 11 chr6 8665159 8665526 -173749716 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8665533 8665618 -173749624 + (TA)n Simple_repeat Simple_repeat 1 86 0 6404 136 17 1 chr6 8665663 8667064 -173748178 - L1PB2 LINE L1 -3 6148 4724 496 120 27 0 chr6 8667062 8667137 -173748105 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8667273 8667293 -173747949 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1979 137 0 0 chr6 8667293 8667571 -173747671 - AluSg SINE Alu -32 278 1 725 193 37 7 chr6 8667602 8667737 -173747505 - Tigger7 DNA MER2_type -594 139 1 3009 118 67 28 chr6 8667740 8668276 -173746966 + L1MA8 LINE L1 5734 6290 -1 2362 210 53 31 chr6 8668905 8669117 -173746125 - MER89 LTR ERV1 0 559 353 1749 210 14 25 chr6 8669117 8669483 -173745759 + MLT1A1 LTR MaLR 4 365 0 2362 210 53 31 chr6 8669483 8669817 -173745425 - MER89 LTR ERV1 -206 353 1 225 0 0 0 chr6 8671098 8671123 -173744119 + (T)n Simple_repeat Simple_repeat 1 25 0 2194 105 7 3 chr6 8671459 8671755 -173743487 + AluSc SINE Alu 1 297 -12 1869 97 0 8 chr6 8672273 8672521 -173742721 - AluSg SINE Alu -5 305 60 217 313 17 26 chr6 8673934 8674049 -173741193 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8674133 8674158 -173741084 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1777 147 6 45 chr6 8674158 8674471 -173740771 - AluJo SINE Alu -11 301 1 249 88 0 0 chr6 8677755 8677789 -173737453 + L2 LINE L2 3267 3300 -13 210 292 96 18 chr6 8678046 8678235 -173737007 + MIR SINE MIR 3 207 -55 1772 114 19 19 chr6 8678865 8679128 -173736114 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8680537 8680560 -173734682 + AT_rich Low_complexity Low_complexity 1 23 0 1763 171 3 7 chr6 8680586 8680879 -173734363 - AluJb SINE Alu -20 292 1 256 284 23 11 chr6 8681218 8681306 -173733936 - MER5B DNA MER1_type -86 92 4 1878 176 42 3 chr6 8681448 8681783 -173733459 - MER7A DNA MER2_type 0 346 1 260 298 0 21 chr6 8682105 8682199 -173733043 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8683199 8683220 -173732022 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8683313 8683423 -173731819 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8683673 8683790 -173731452 - AluJo SINE Alu -3 309 193 822 165 0 0 chr6 8683806 8683927 -173731315 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8684895 8685648 -173729594 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8685681 8685709 -173729533 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8686162 8686359 -173728883 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8686765 8686929 -173728313 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8688095 8688374 -173726868 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8688816 8688842 -173726400 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8689560 8689838 -173725404 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8690003 8690234 -173725008 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8690987 8691034 -173724208 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8691038 8691366 -173723876 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8691373 8691809 -173723433 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8691869 8692059 -173723183 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8692237 8692809 -173722433 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8692812 8692856 -173722386 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8692867 8692888 -173722354 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8692926 8693149 -173722093 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8693149 8693192 -173722050 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8693192 8693472 -173721770 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8693472 8693793 -173721449 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8693793 8694098 -173721144 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8694098 8694387 -173720855 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8694387 8694687 -173720555 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8694687 8694826 -173720416 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8694826 8695046 -173720196 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8695046 8695274 -173719968 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8695274 8695419 -173719823 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8695442 8695558 -173719684 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8695926 8696234 -173719008 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8696583 8696886 -173718356 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8696998 8697162 -173718080 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8697313 8697544 -173717698 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8699049 8699347 -173715895 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8699361 8699418 -173715824 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8699434 8699745 -173715497 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8699930 8700081 -173715161 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8700339 8700505 -173714737 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8700572 8700859 -173714383 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8701576 8701680 -173713562 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8701727 8701843 -173713399 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8701857 8702159 -173713083 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8702291 8702474 -173712768 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8703222 8703288 -173711954 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8703416 8703874 -173711368 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8704115 8704138 -173711104 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8704260 8704421 -173710821 + AluSg/x SINE Alu 170 330 0 574 273 58 73 chr6 8704679 8704854 -173710388 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8704854 8705164 -173710078 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8705164 8705248 -173709994 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8705473 8705769 -173709473 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8706223 8706261 -173708981 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8708187 8708324 -173706918 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8710591 8710620 -173704622 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8711101 8711611 -173703631 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8711761 8712198 -173703044 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8712404 8712714 -173702528 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8712723 8713020 -173702222 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8713502 8713596 -173701646 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8713854 8714423 -173700819 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8716067 8717598 -173697644 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8717726 8717780 -173697462 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8718543 8718598 -173696644 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8719151 8719437 -173695805 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8719442 8719829 -173695413 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8719842 8721034 -173694208 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8721034 8721470 -173693772 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8721470 8721911 -173693331 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8721927 8722047 -173693195 + FLAM_C SINE Alu 2 121 -22 809 118 46 14 chr6 8722057 8722677 -173692565 + (TA)n Simple_repeat Simple_repeat 1 640 0 430 244 29 96 chr6 8722678 8722887 -173692355 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8722885 8722964 -173692278 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8723514 8723764 -173691478 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8723769 8724297 -173690945 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8724486 8724780 -173690462 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8724793 8724984 -173690258 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8724984 8725217 -173690025 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8725217 8725423 -173689819 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8725456 8725484 -173689758 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8725627 8725768 -173689474 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8725769 8726059 -173689183 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8726189 8726211 -173689031 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8726313 8726436 -173688806 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8726604 8726667 -173688575 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8726730 8726855 -173688387 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8726869 8726971 -173688271 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8726971 8727001 -173688241 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8727001 8727106 -173688136 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8727189 8727505 -173687737 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8727662 8727712 -173687530 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8727729 8727811 -173687431 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8728716 8728751 -173686491 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8729752 8730064 -173685178 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8730948 8731349 -173683893 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8731353 8731527 -173683715 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8731527 8731565 -173683677 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8731571 8731876 -173683366 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8731879 8732512 -173682730 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8733223 8733418 -173681824 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8733427 8733491 -173681751 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8733526 8733832 -173681410 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8733919 8734051 -173681191 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8734487 8734659 -173680583 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8735112 8735471 -173679771 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8735471 8735779 -173679463 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8735779 8735851 -173679391 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8735851 8735961 -173679281 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8735961 8736025 -173679217 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8737401 8737624 -173677618 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8737624 8738125 -173677117 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8738125 8738290 -173676952 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8738300 8738394 -173676848 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8739848 8740272 -173674970 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8740616 8740668 -173674574 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8740668 8740943 -173674299 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8740943 8741245 -173673997 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8742824 8742938 -173672304 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8743505 8743537 -173671705 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8743554 8743851 -173671391 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8744231 8744448 -173670794 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8744627 8745005 -173670237 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8744779 8745093 -173670149 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8745099 8745190 -173670052 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8745310 8745478 -173669764 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8745483 8745656 -173669586 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8745675 8745884 -173669358 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8745919 8746069 -173669173 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8749249 8749569 -173665673 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8749995 8750074 -173665168 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8750156 8750449 -173664793 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8750583 8750770 -173664472 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8751071 8751785 -173663457 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8751975 8752204 -173663038 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8752233 8752613 -173662629 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8752613 8752658 -173662584 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8752658 8752745 -173662497 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8752747 8752860 -173662382 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8752898 8753006 -173662236 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8753030 8753454 -173661788 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8753766 8754151 -173661091 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8754333 8754399 -173660843 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8755125 8755149 -173660093 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8755688 8756007 -173659235 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8756018 8757474 -173657768 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8757474 8757532 -173657710 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8757532 8757725 -173657517 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8757801 8758015 -173657227 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8758247 8758378 -173656864 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8759251 8760285 -173654957 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8760830 8760885 -173654357 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8761305 8761391 -173653851 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8762797 8763111 -173652131 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8764490 8764947 -173650295 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8765706 8765982 -173649260 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8765982 8766012 -173649230 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8766012 8766034 -173649208 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8766284 8766564 -173648678 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8766810 8766836 -173648406 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8766855 8767037 -173648205 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8767520 8767562 -173647680 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8769021 8769420 -173645822 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8769696 8769781 -173645461 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8769793 8770063 -173645179 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8770163 8770821 -173644421 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8770821 8771351 -173643891 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8771460 8772808 -173642434 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8772915 8773177 -173642065 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8773192 8773231 -173642011 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8773261 8773710 -173641532 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8775069 8775605 -173639637 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8775793 8776074 -173639168 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8776088 8776236 -173639006 + AluSg/x SINE Alu 163 310 0 363 170 44 41 chr6 8776274 8776403 -173638839 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8776412 8776549 -173638693 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8776648 8776690 -173638552 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8777121 8777311 -173637931 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8778757 8778804 -173636438 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8778804 8779090 -173636152 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8779278 8779309 -173635933 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8779309 8779388 -173635854 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8779462 8779785 -173635457 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8780041 8780267 -173634975 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8780357 8780473 -173634769 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8780776 8781426 -173633816 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8781426 8781887 -173633355 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8781887 8781948 -173633294 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8783930 8783987 -173631255 + L2 LINE L2 3214 3271 -1 5249 199 37 124 chr6 8784913 8786869 -173628373 - L1MA6 LINE L1 0 6300 4517 1267 150 17 0 chr6 8786869 8787102 -173628140 + Tigger1 DNA MER2_type 2 238 -2180 5249 199 37 124 chr6 8787102 8788201 -173627041 - L1MA6 LINE L1 -1783 4517 3324 * 24884 133 10 18 chr6 8788182 8790593 -173624649 - L1PA8A LINE L1 -1 6445 4017 2349 84 0 16 chr6 8790593 8790901 -173624341 - AluY SINE Alu -4 307 5 24884 133 10 18 chr6 8790901 8791394 -173623848 - L1PA8A LINE L1 -2429 4017 3522 2210 71 7 4 chr6 8791394 8791711 -173623531 + AluY SINE Alu 1 318 0 24884 133 10 18 chr6 8791711 8795239 -173620003 - L1PA8A LINE L1 -2924 3522 2 2426 184 58 11 chr6 8795238 8795890 -173619352 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8795943 8795972 -173619270 + AT_rich Low_complexity Low_complexity 1 29 0 1573 199 3 14 chr6 8796015 8796306 -173618936 + AluJo SINE Alu 1 288 -24 732 233 44 0 chr6 8796329 8796557 -173618685 + L1MD1 LINE L1 5031 5268 -878 919 172 49 0 chr6 8796603 8796766 -173618476 + FRAM SINE Alu 1 163 -13 3038 161 58 67 chr6 8796767 8797332 -173617910 + L1MD1 LINE L1 5284 5841 -401 2038 121 9 16 chr6 8797332 8797647 -173617595 + AluSq SINE Alu 1 313 0 3038 161 58 67 chr6 8797647 8797893 -173617349 + L1MD1 LINE L1 5841 6088 -154 279 304 36 53 chr6 8797887 8798134 -173617108 - L1MC/D LINE L1 -2226 5582 5340 * 1995 163 23 3 chr6 8799467 8799816 -173615426 - MLT1A1 LTR MaLR 0 365 10 1764 175 117 51 chr6 8801219 8801671 -173613571 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8801672 8801723 -173613519 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2441 176 119 52 chr6 8801723 8802466 -173612776 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8802466 8802558 -173612684 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1567 140 27 89 chr6 8802576 8802869 -173612373 - AluJo SINE Alu -37 275 1 227 171 0 0 chr6 8802869 8802910 -173612332 + LTR44 LTR ERV1 479 519 0 3403 211 115 27 chr6 8803734 8804884 -173610358 - Zaphod DNA AcHobo -3 4028 2741 2277 91 7 7 chr6 8804884 8805181 -173610061 - AluSg SINE Alu -13 297 1 3403 211 115 27 chr6 8805181 8805382 -173609860 - Zaphod DNA AcHobo -1290 2741 2559 946 283 162 13 chr6 8805395 8805791 -173609451 - Zaphod DNA AcHobo -3475 556 102 2263 74 0 3 chr6 8805792 8806100 -173609142 - AluY SINE Alu 0 307 1 207 0 0 0 chr6 8806275 8806298 -173608944 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2742 39 3 3 chr6 8806298 8806632 -173608610 - L1PA8 LINE L1 -17 6155 5822 222 91 0 0 chr6 8806704 8806737 -173608505 + (TG)n Simple_repeat Simple_repeat 1 33 0 812 224 50 0 chr6 8807466 8807645 -173607597 - MER5A DNA MER1_type 0 189 2 3332 70 2 11 chr6 8808045 8808488 -173606754 + L1PA10 LINE L1 5719 6157 -11 183 80 0 0 chr6 8811011 8811036 -173604206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8811446 8811535 -173603707 + (TA)n Simple_repeat Simple_repeat 2 92 0 2459 56 16 0 chr6 8811967 8812272 -173602970 + AluY SINE Alu 1 310 -1 2126 156 150 25 chr6 8813344 8813871 -173601371 - L1MB5 LINE L1 -6 6168 5576 200 313 29 16 chr6 8814019 8814117 -173601125 - MIR SINE MIR -64 144 46 1073 206 0 0 chr6 8815193 8815402 -173599840 - MER3 DNA MER1_type 0 209 1 181 346 44 44 chr6 8815464 8815600 -173599642 - MIR3 SINE MIR -6 202 67 2166 92 3 36 chr6 8815708 8816012 -173599230 - AluSq SINE Alu -19 294 1 283 372 117 21 chr6 8816020 8816671 -173598571 + L2 LINE L2 1759 2471 -843 479 208 19 0 chr6 8816671 8816777 -173598465 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8817422 8817475 -173597767 + (CA)n Simple_repeat Simple_repeat 2 54 0 531 331 108 30 chr6 8818310 8818818 -173596424 + L2 LINE L2 2032 2579 -735 231 279 279 13 chr6 8818820 8819046 -173596196 + L2 LINE L2 3028 3313 0 363 194 0 0 chr6 8819815 8819882 -173595360 - MIR SINE MIR 0 262 196 473 252 18 0 chr6 8820344 8820455 -173594787 - MIR SINE MIR -97 165 53 808 138 0 38 chr6 8820523 8820682 -173594560 + L1PA16 LINE L1 5913 6065 -101 402 248 67 0 chr6 8820819 8820924 -173594318 + MIR SINE MIR 150 261 -1 2067 125 7 14 chr6 8820970 8821267 -173593975 + AluSx SINE Alu 1 295 -17 317 254 118 35 chr6 8822249 8822418 -173592824 + L1ME4a LINE L1 5933 6115 -6 261 338 156 23 chr6 8822528 8822836 -173592406 + L2 LINE L2 2827 3175 -97 1723 127 167 9 chr6 8824680 8825004 -173590238 + THE1C LTR MaLR 1 375 0 10711 106 7 42 chr6 8825004 8826641 -173588601 + THE1C-int LTR MaLR 1 1580 0 2071 111 72 28 chr6 8826641 8827000 -173588242 + THE1C LTR MaLR 1 375 0 460 341 49 0 chr6 8827153 8827317 -173587925 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8827370 8827550 -173587692 + L2 LINE L2 1605 1788 -1526 2603 68 3 3 chr6 8827596 8827935 -173587307 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8828062 8828093 -173587149 + (CA)n Simple_repeat Simple_repeat 1 31 0 1769 271 65 52 chr6 8828294 8828966 -173586276 + L2 LINE L2 1811 2491 -823 871 227 49 0 chr6 8828966 8829169 -173586073 + MLT1F LTR MaLR 1 213 -354 1413 189 73 9 chr6 8829171 8829499 -173585743 - MLT1A2 LTR MaLR 0 374 26 1290 214 107 0 chr6 8829530 8829839 -173585403 + MLT1F LTR MaLR 199 540 -2 1313 261 177 13 chr6 8829841 8830543 -173584699 + L2 LINE L2 2487 3313 0 212 328 9 78 chr6 8830818 8830934 -173584308 + L3 LINE CR1 1431 1538 -39 1916 115 124 18 chr6 8831445 8831784 -173583458 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8832792 8832881 -173582361 + (CA)n Simple_repeat Simple_repeat 2 90 0 198 294 76 51 chr6 8832899 8833032 -173582210 - L2 LINE L2 -1220 2094 1953 1706 167 17 10 chr6 8833032 8833320 -173581922 + AluJo SINE Alu 3 292 -20 198 294 76 51 chr6 8833320 8833383 -173581859 - L2 LINE L2 -1361 1953 1893 370 256 142 11 chr6 8833390 8833566 -173581676 + MER58C DNA MER1_type 1 199 -16 224 302 28 47 chr6 8833727 8833833 -173581409 - MER5B DNA MER1_type -12 166 63 1939 139 0 0 chr6 8833836 8834109 -173581133 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8834313 8834353 -173580889 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8834459 8834496 -173580746 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 6710 52 38 0 chr6 8834695 8835916 -173579326 + L1PA6 LINE L1 4869 6154 0 619 257 138 5 chr6 8836823 8837041 -173578201 + MIR SINE MIR 16 262 0 1454 152 41 104 chr6 8837335 8837452 -173577790 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8837452 8837475 -173577767 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8837476 8837522 -173577720 + (TA)n Simple_repeat Simple_repeat 2 47 0 1454 152 41 104 chr6 8837522 8837718 -173577524 + AluJo SINE Alu 123 296 -16 2688 199 38 5 chr6 8837744 8838346 -173576896 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8838927 8839019 -173576223 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 763 313 100 9 chr6 8840756 8841175 -173574067 + L2 LINE L2 1854 2310 -1004 1861 186 36 46 chr6 8841187 8841740 -173573502 - MLT2A2 LTR ERVL 0 554 1 494 319 160 10 chr6 8841761 8842434 -173572808 + L2 LINE L2 2335 3210 -103 201 176 0 118 chr6 8842518 8842569 -173572673 + L2 LINE L2 3262 3306 -7 254 143 0 0 chr6 8844135 8844177 -173571065 + MLT1A2 LTR MaLR 2 43 -331 265 174 0 0 chr6 8844178 8844224 -173571018 + MLT1A2 LTR MaLR 158 203 -162 835 190 72 5 chr6 8844258 8844453 -173570789 + MLT1A2 LTR MaLR 166 373 -1 318 303 37 0 chr6 8844745 8844854 -173570388 - MIR SINE MIR -17 245 133 226 288 68 14 chr6 8844898 8844971 -173570271 - MIR SINE MIR -84 124 48 519 308 80 83 chr6 8845727 8846088 -173569154 - L2 LINE L2 -40 3232 2873 867 320 76 15 chr6 8846223 8846617 -173568625 - L2 LINE L2 -649 2665 2248 191 279 77 48 chr6 8847149 8847253 -173567989 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8847598 8847914 -173567328 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8848537 8848825 -173566417 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8849515 8849550 -173565692 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8849679 8849721 -173565521 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8849794 8850110 -173565132 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8850519 8850540 -173564702 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8850995 8851070 -173564172 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8851315 8851441 -173563801 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8852370 8852444 -173562798 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8852444 8852760 -173562482 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8852761 8852887 -173562355 + MER63 DNA MER1_type 695 1054 -8 2312 205 31 98 chr6 8853071 8853809 -173561433 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8854038 8854127 -173561115 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8854773 8854867 -173560375 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8855061 8855381 -173559861 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8856205 8856362 -173558880 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8856384 8856453 -173558789 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8856609 8856933 -173558309 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8856973 8857218 -173558024 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8857213 8857314 -173557928 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8857827 8857932 -173557310 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8857932 8858146 -173557096 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8858146 8858192 -173557050 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8860710 8861002 -173554240 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8861388 8861786 -173553456 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8862171 8862363 -173552879 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8863804 8863987 -173551255 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8864041 8865903 -173549339 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8866703 8866779 -173548463 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8867246 8867330 -173547912 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8867330 8867961 -173547281 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8867961 8868448 -173546794 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8868473 8868978 -173546264 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8869534 8869908 -173545334 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8869908 8870196 -173545046 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8872183 8872410 -173542832 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8872451 8873149 -173542093 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8873137 8873559 -173541683 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8873754 8874261 -173540981 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8874261 8874560 -173540682 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8874560 8874926 -173540316 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8874932 8875195 -173540047 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8875195 8875516 -173539726 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8875516 8875645 -173539597 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8875668 8875835 -173539407 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8876047 8876622 -173538620 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8877253 8877329 -173537913 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8877541 8877909 -173537333 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8878577 8878677 -173536565 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8879306 8879356 -173535886 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8879618 8879955 -173535287 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8881488 8881654 -173533588 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8881724 8881841 -173533401 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8882190 8882408 -173532834 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8882704 8882729 -173532513 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8882729 8882768 -173532474 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8882768 8882897 -173532345 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8882897 8883300 -173531942 - MLT2A1 LTR ERVL -37 407 1 29371 58 11 3 chr6 8883300 8888858 -173526384 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8883300 8883444 -173531798 - Ricksha DNA DNA -2902 344 186 * 2575 75 35 132 chr6 8888858 8889350 -173525892 - MLT2A1 LTR ERVL 0 444 1 1324 276 86 60 chr6 8889351 8889982 -173525260 - MER21B LTR ERV1 -193 670 24 198 0 0 0 chr6 8890095 8890117 -173525125 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1058 180 38 38 chr6 8890391 8890652 -173524590 - MLT1A1 LTR MaLR 0 365 105 1730 169 77 6 chr6 8891426 8891764 -173523478 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8891869 8891899 -173523343 + AT_rich Low_complexity Low_complexity 1 30 0 2147 148 3 26 chr6 8892077 8892422 -173522820 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8894237 8894260 -173520982 + AT_rich Low_complexity Low_complexity 1 23 0 297 213 47 147 chr6 8894497 8894708 -173520534 - L2 LINE L2 -2 3311 3122 222 253 218 59 chr6 8894945 8895147 -173520095 + L2 LINE L2 3039 3272 0 303 305 146 7 chr6 8895244 8895395 -173519847 + MLT1J LTR MaLR 106 277 -234 684 201 107 0 chr6 8895456 8895625 -173519617 + MIR SINE MIR 2 188 -74 206 296 157 17 chr6 8895787 8895902 -173519340 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8897295 8897351 -173517891 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8897438 8897461 -173517781 + (CAG)n Simple_repeat Simple_repeat 1 23 0 620 301 53 22 chr6 8897473 8897699 -173517543 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8897932 8897963 -173517279 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 258 74 39 chr6 8898035 8898300 -173516942 + L1M4 LINE L1 4361 4622 -1524 359 274 201 11 chr6 8898569 8898843 -173516399 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8900746 8900789 -173514453 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8901454 8901764 -173513478 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8902446 8902617 -173512625 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8903721 8904021 -173511221 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8904550 8904572 -173510670 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8904842 8904914 -173510328 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8905607 8905801 -173509441 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8905801 8906154 -173509088 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8906157 8906876 -173508366 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8906893 8907039 -173508203 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8908329 8908379 -173506863 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8910059 8910179 -173505063 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8910179 8910207 -173505035 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8910207 8910388 -173504854 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8911972 8912209 -173503033 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8912306 8912650 -173502592 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8913491 8913520 -173501722 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8913624 8913645 -173501597 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8914871 8914921 -173500321 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8916336 8916757 -173498485 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8916939 8917220 -173498022 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8917448 8917787 -173497455 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8918168 8918345 -173496897 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 579 194 22 22 chr6 8918362 8918542 -173496700 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8918542 8918824 -173496418 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8918844 8918986 -173496256 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8919047 8919091 -173496151 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8919254 8919390 -173495852 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8919440 8919689 -173495553 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8919876 8920023 -173495219 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8920463 8920545 -173494697 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8920545 8920847 -173494395 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8920847 8921099 -173494143 - MER33 DNA MER1_type -2341 244 1 1749 157 3 63 chr6 8921155 8921486 -173493756 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8922346 8922681 -173492561 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8922723 8922838 -173492404 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8922839 8922941 -173492301 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8922966 8922998 -173492244 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8922998 8923048 -173492194 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8923048 8923658 -173491584 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8923658 8923883 -173491359 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8923886 8924496 -173490746 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8924496 8925560 -173489682 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8925568 8926226 -173489016 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8926279 8926442 -173488800 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8926452 8926686 -173488556 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8926686 8926989 -173488253 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8926989 8927309 -173487933 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8927458 8927978 -173487264 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8928012 8928291 -173486951 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8928291 8928602 -173486640 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8928602 8928893 -173486349 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8928945 8929065 -173486177 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8929058 8929266 -173485976 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8929266 8929346 -173485896 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8929346 8929469 -173485773 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8929465 8929604 -173485638 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8930132 8930206 -173485036 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8930367 8930418 -173484824 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8931384 8931422 -173483820 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8931422 8931445 -173483797 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8932030 8932331 -173482911 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8933204 8933285 -173481957 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8933440 8933555 -173481687 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8934048 8934074 -173481168 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8934956 8935307 -173479935 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8935664 8935729 -173479513 - L1PA16 LINE L1 -4 7600 7536 11877 207 25 22 chr6 8935730 8938003 -173477239 - L1PA16 LINE L1 -105 7499 5234 2003 136 0 3 chr6 8938003 8938297 -173476945 - AluSx SINE Alu -17 295 3 11877 207 25 22 chr6 8938297 8939110 -173476132 - L1PA16 LINE L1 -2370 5234 4425 1887 159 0 0 chr6 8939110 8939418 -173475824 - AluSx SINE Alu -4 308 1 11877 207 25 22 chr6 8939418 8940620 -173474622 - L1PA16 LINE L1 -3179 4425 3197 2018 154 0 0 chr6 8940620 8940925 -173474317 - AluSx SINE Alu -7 305 1 11877 207 25 22 chr6 8940925 8941922 -173473320 - L1PA16 LINE L1 -4407 3197 2204 27 62 0 0 chr6 8942898 8942946 -173472296 + AT_rich Low_complexity Low_complexity 1 48 0 2094 152 82 14 chr6 8943000 8943363 -173471879 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8943363 8943388 -173471854 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2094 152 82 14 chr6 8943388 8943438 -173471804 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8943631 8943673 -173471569 + AT_rich Low_complexity Low_complexity 1 42 0 1562 206 21 45 chr6 8943826 8944200 -173471042 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8944244 8944266 -173470976 + (A)n Simple_repeat Simple_repeat 1 22 0 1009 328 22 9 chr6 8944266 8944583 -173470659 - L3 LINE CR1 -25 1552 1232 499 263 8 8 chr6 8944703 8944821 -173470421 - L2 LINE L2 0 3272 3155 212 433 0 0 chr6 8944877 8945011 -173470231 - L2 LINE L2 -335 2978 2845 378 123 37 49 chr6 8945026 8945107 -173470135 + L1MA5A LINE L1 6218 6297 0 1950 232 88 17 chr6 8945113 8945635 -173469607 + MLT1F1 LTR MaLR 9 567 0 488 265 123 0 chr6 8945643 8945813 -173469429 - MLT1L LTR MaLR -1 614 424 1078 275 109 73 chr6 8945998 8946204 -173469038 - L2 LINE L2 -791 2523 2326 2065 98 11 21 chr6 8946204 8946491 -173468751 - AluSq SINE Alu -27 286 3 1078 275 109 73 chr6 8946491 8947189 -173468053 - L2 LINE L2 -988 2326 1586 658 272 94 22 chr6 8947303 8947527 -173467715 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8950901 8951037 -173464205 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8951117 8951330 -173463912 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8951620 8951685 -173463557 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8952039 8952331 -173462911 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8952377 8952868 -173462374 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8952968 8952992 -173462250 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8952994 8953156 -173462086 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8953168 8953515 -173461727 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8953535 8953657 -173461585 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8953660 8955088 -173460154 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8955077 8955201 -173460041 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8955201 8955488 -173459754 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8955488 8955788 -173459454 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8955902 8956446 -173458796 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8956552 8956780 -173458462 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8956787 8957022 -173458220 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8957022 8957314 -173457928 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8957314 8958501 -173456741 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8958501 8958776 -173456466 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8958776 8958833 -173456409 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8958833 8959131 -173456111 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8959131 8960208 -173455034 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8960226 8960258 -173454984 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8960400 8960952 -173454290 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8960961 8961698 -173453544 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8961698 8961796 -173453446 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8961796 8961850 -173453392 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8961850 8962221 -173453021 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8962231 8962619 -173452623 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8964565 8966976 -173448266 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8967293 8967335 -173447907 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8968396 8968720 -173446522 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8968857 8968973 -173446269 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8968985 8969615 -173445627 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8969567 8969700 -173445542 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8969752 8969938 -173445304 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8969938 8970230 -173445012 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8970230 8970407 -173444835 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8970572 8970609 -173444633 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8970669 8970975 -173444267 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8971406 8971972 -173443270 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8972068 8972208 -173443034 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8972986 8973248 -173441994 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8973315 8973398 -173441844 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8973411 8973552 -173441690 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8974470 8974642 -173440600 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8975029 8975172 -173440070 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8975185 8975208 -173440034 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8975213 8976990 -173438252 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8977004 8977288 -173437954 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8977296 8978007 -173437235 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8978007 8978355 -173436887 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8978355 8978377 -173436865 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8978386 8978407 -173436835 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8979625 8979646 -173435596 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8980278 8980586 -173434656 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8980654 8981138 -173434104 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8981758 8981944 -173433298 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8982053 8982109 -173433133 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8983572 8983600 -173431642 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8983925 8983968 -173431274 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8985363 8985549 -173429693 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8986438 8986823 -173428419 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8986932 8986978 -173428264 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8987576 8987598 -173427644 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8987609 8987803 -173427439 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8988264 8988303 -173426939 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8988831 8989382 -173425860 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8989413 8989621 -173425621 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8989643 8989719 -173425523 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8989742 8990039 -173425203 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8990091 8990278 -173424964 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8990279 8990657 -173424585 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8990657 8990889 -173424353 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8991052 8991136 -173424106 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8991566 8991595 -173423647 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8991602 8991723 -173423519 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8992016 8992321 -173422921 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8992326 8992405 -173422837 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8992555 8992585 -173422657 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8993360 8993476 -173421766 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8993652 8993683 -173421559 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8995766 8995835 -173419407 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8995944 8996016 -173419226 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8996027 8996053 -173419189 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8996055 8998892 -173416350 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8998897 9000120 -173415122 + L1ME1 LINE L1 4772 6099 -136 2166 86 0 7 chr6 9000120 9000428 -173414814 + AluSc SINE Alu 1 306 0 2373 226 104 43 chr6 9000428 9000569 -173414673 + L1ME1 LINE L1 6099 6230 -5 1184 110 0 0 chr6 9000716 9000889 -173414353 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 9000886 9000942 -173414300 + L1 LINE L1 4794 4849 -1297 * 3122 103 9 0 chr6 9000948 9001403 -173413839 + L1PA8A LINE L1 4143 4601 -1545 5856 91 16 17 chr6 9001404 9002839 -173412403 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 9002839 9002873 -173412369 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 9003028 9003050 -173412192 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 9003187 9003208 -173412034 + (T)n Simple_repeat Simple_repeat 1 21 0 245 268 24 24 chr6 9003812 9003911 -173411331 - MER5A DNA MER1_type -87 102 4 798 269 197 14 chr6 9004005 9004437 -173410805 - MLT1J LTR MaLR 0 511 1 267 311 78 11 chr6 9004490 9004580 -173410662 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 9005663 9005685 -173409557 + AT_rich Low_complexity Low_complexity 1 22 0 961 238 135 82 chr6 9005824 9006552 -173408690 - LTR41 LTR ERVL -7 766 1 253 327 58 29 chr6 9006778 9006882 -173408360 - MIR3 SINE MIR -36 172 66 701 273 98 35 chr6 9006889 9007175 -173408067 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 9010670 9010727 -173404515 + (TG)n Simple_repeat Simple_repeat 1 57 0 8778 129 21 9 chr6 9011175 9012546 -173402696 + Tigger1 DNA MER2_type 31 1417 -1001 2429 151 47 7 chr6 9012543 9012967 -173402275 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 9013580 9013657 -173401585 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 9013801 9013963 -173401279 + MLT1J2 LTR MaLR 124 307 -143 450 317 116 9 chr6 9014425 9014649 -173400593 - MIR SINE MIR -7 255 8 748 305 141 14 chr6 9015401 9015874 -173399368 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 9015888 9016005 -173399237 - MIR SINE MIR -65 197 74 550 314 50 0 chr6 9016158 9016317 -173398925 - MIR SINE MIR -73 189 23 1962 142 3 7 chr6 9016463 9016759 -173398483 - AluSx SINE Alu -15 297 3 446 264 82 43 chr6 9017179 9017346 -173397896 - L1MEd LINE L1 -4880 1239 1055 1812 159 0 26 chr6 9017346 9017654 -173397588 - AluJo SINE Alu -12 300 1 446 264 82 43 chr6 9017654 9017766 -173397476 - L1MEd LINE L1 -5064 1055 949 1048 223 26 108 chr6 9017782 9017990 -173397252 - L1ME2 LINE L1 -8 6156 5997 2553 43 3 0 chr6 9017990 9018291 -173396951 + AluY SINE Alu 1 302 -9 1048 223 26 108 chr6 9018291 9018500 -173396742 - L1ME2 LINE L1 -167 5997 5773 880 306 121 16 chr6 9019727 9020165 -173395077 + L1ME LINE L1 740 1223 -5200 645 234 100 65 chr6 9020190 9020737 -173394505 + L1ME LINE L1 1291 1833 -4887 1629 238 25 39 chr6 9020764 9021490 -173393752 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9021490 9021519 -173393723 + (CA)n Simple_repeat Simple_repeat 2 30 0 1629 238 25 39 chr6 9021519 9021630 -173393612 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9021723 9021766 -173393476 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 9021982 9022007 -173393235 + AT_rich Low_complexity Low_complexity 1 25 0 4334 195 20 27 chr6 9022132 9022987 -173392255 - MER21B LTR ERV1 -14 849 1 257 298 35 94 chr6 9025304 9025475 -173389767 + L2 LINE L2 2953 3113 -159 2085 112 0 0 chr6 9025521 9025808 -173389434 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 9025887 9025937 -173389305 + AT_rich Low_complexity Low_complexity 1 50 0 2010 128 0 28 chr6 9026521 9026842 -173388400 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 9028279 9028303 -173386939 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 9029106 9029136 -173386106 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 219 0 0 chr6 9029461 9029502 -173385740 - L2 LINE L2 -1 3312 3272 269 381 60 16 chr6 9029654 9029903 -173385339 - L2 LINE L2 -243 3070 2811 585 293 55 30 chr6 9030099 9030427 -173384815 - L1ME4a LINE L1 -263 5858 5523 205 375 26 40 chr6 9032329 9032481 -173382761 + L2 LINE L2 2608 2757 -557 263 289 67 0 chr6 9033237 9033341 -173381901 - MIR SINE MIR -31 231 121 604 285 131 9 chr6 9034799 9035013 -173380229 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 9036404 9036426 -173378816 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 9036593 9036787 -173378455 - MIR SINE MIR -41 221 20 383 257 44 26 chr6 9037433 9037546 -173377696 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 9038649 9039087 -173376155 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 9039072 9039438 -173375804 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 9039593 9039893 -173375349 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 9040698 9041094 -173374148 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 9041429 9041472 -173373770 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 9042011 9042421 -173372821 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 9043070 9043273 -173371969 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 9043278 9043884 -173371358 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 9043871 9044072 -173371170 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 9044828 9044855 -173370387 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 9044858 9045018 -173370224 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 9045976 9046003 -173369239 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 9046023 9047632 -173367610 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 9047733 9047858 -173367384 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 9047858 9048157 -173367085 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 9048157 9048335 -173366907 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 9048354 9048386 -173366856 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 9048386 9048815 -173366427 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 9048815 9049116 -173366126 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 9049212 9049527 -173365715 - L2 LINE L2 -452 2862 2529 374 325 90 5 chr6 9051769 9051957 -173363285 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 9051963 9051986 -173363256 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 9052968 9053066 -173362176 - MIR3 SINE MIR -18 190 83 1721 74 12 19 chr6 9053585 9053841 -173361401 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 9054324 9054476 -173360766 + CT-rich Low_complexity Low_complexity 2 151 0 1769 144 102 18 chr6 9054929 9055263 -173359979 - MLT1A1 LTR MaLR 0 365 4 1578 209 0 17 chr6 9055281 9055583 -173359659 - AluJo SINE Alu -15 297 1 391 148 23 0 chr6 9055876 9055964 -173359278 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 9056490 9056542 -173358700 + C-rich Low_complexity Low_complexity 4 55 0 233 352 19 19 chr6 9056666 9056771 -173358471 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 9056987 9057051 -173358191 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 9057293 9057319 -173357923 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 9057363 9057394 -173357848 + (TG)n Simple_repeat Simple_repeat 2 32 0 2288 102 3 0 chr6 9058381 9058676 -173356566 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 9058896 9058917 -173356325 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 9059399 9059432 -173355810 + (TG)n Simple_repeat Simple_repeat 1 33 0 593 236 156 31 chr6 9059808 9060033 -173355209 + MER112 DNA MER1_type 1 253 -7 1859 148 17 10 chr6 9060519 9060817 -173354425 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 9062004 9062047 -173353195 + AT_rich Low_complexity Low_complexity 1 43 0 1418 179 54 24 chr6 9062336 9062633 -173352609 - AluJo SINE Alu -6 306 1 494 269 40 120 chr6 9063352 9063701 -173351541 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 9063710 9063761 -173351481 + (TG)n Simple_repeat Simple_repeat 1 51 0 6726 60 19 2 chr6 9063763 9065469 -173349773 - L1PA7 LINE L1 -3 6151 4423 15419 105 8 3 chr6 9065470 9067745 -173347497 + L1P LINE L1 1490 3775 -2371 22 0 0 0 chr6 9068545 9068567 -173346675 + AT_rich Low_complexity Low_complexity 1 22 0 501 308 27 7 chr6 9068715 9068861 -173346381 + MIR3 SINE MIR 56 204 -4 393 58 0 0 chr6 9069895 9069947 -173345295 + (CA)n Simple_repeat Simple_repeat 2 53 0 296 130 14 0 chr6 9070332 9070401 -173344841 + (TA)n Simple_repeat Simple_repeat 2 71 0 220 77 96 0 chr6 9070464 9070516 -173344726 + (TA)n Simple_repeat Simple_repeat 2 58 0 208 128 64 43 chr6 9071566 9071613 -173343629 + MIR3 SINE MIR 144 191 -17 6218 138 15 17 chr6 9071862 9073941 -173341301 + L1MA4 LINE L1 4220 6295 -5 1552 126 31 126 chr6 9074205 9074530 -173340712 + AluJb SINE Alu 2 295 -7 619 280 108 91 chr6 9074900 9075740 -173339502 - L1M4c LINE L1 -2967 3179 2325 23 33 0 0 chr6 9076079 9076109 -173339133 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr6 9076257 9076281 -173338961 + AT_rich Low_complexity Low_complexity 1 24 0 14224 185 24 33 chr6 9076315 9076766 -173338476 - L1PB2 LINE L1 0 6867 6413 270 56 0 0 chr6 9076766 9076802 -173338440 + (CA)n Simple_repeat Simple_repeat 2 37 0 14224 185 24 33 chr6 9076802 9081526 -173333716 - L1PB2 LINE L1 -454 6413 1793 729 235 0 29 chr6 9081522 9081726 -173333516 + L1PBa LINE L1 1408 1605 -5258 * 3540 227 58 13 chr6 9081713 9082692 -173332550 - L1PB2 LINE L1 -5835 1028 6 231 114 0 0 chr6 9082774 9082809 -173332433 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1430 182 60 33 chr6 9082845 9083170 -173332072 - AluJo SINE Alu 0 333 1 868 126 29 6 chr6 9083258 9083432 -173331810 + CT-rich Low_complexity Low_complexity 1 178 0 313 115 16 16 chr6 9083448 9083509 -173331733 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 263 31 0 0 chr6 9083510 9083542 -173331700 + (TC)n Simple_repeat Simple_repeat 2 33 0 362 213 0 0 chr6 9083579 9083640 -173331602 - FLAM_A SINE Alu -45 88 28 357 286 86 16 chr6 9083725 9084059 -173331183 - L1M4c LINE L1 -776 1597 428 207 88 0 0 chr6 9085022 9085056 -173330186 + (TG)n Simple_repeat Simple_repeat 2 35 0 207 0 0 0 chr6 9085068 9085091 -173330151 + (CA)n Simple_repeat Simple_repeat 2 24 0 522 119 40 23 chr6 9085109 9085286 -173329956 + (TA)n Simple_repeat Simple_repeat 1 180 0 515 210 43 0 chr6 9086353 9086491 -173328751 - L1MB1 LINE L1 -818 5328 5185 * 4506 161 19 20 chr6 9086489 9087336 -173327906 + L1MB1 LINE L1 5322 6167 -1 25 0 0 0 chr6 9087336 9087361 -173327881 + AT_rich Low_complexity Low_complexity 1 25 0 3668 75 20 2 chr6 9087604 9088107 -173327135 - L1PB1 LINE L1 -1 6150 5639 3878 166 13 11 chr6 9089364 9090076 -173325166 - L1MC1 LINE L1 -5 6328 5616 28 0 0 0 chr6 9090525 9090553 -173324689 + AT_rich Low_complexity Low_complexity 1 28 0 194 233 23 0 chr6 9091762 9091805 -173323437 + L3 LINE CR1 1451 1494 -83 608 307 18 21 chr6 9092419 9092533 -173322709 - MER115 DNA AcHobo 0 693 580 1831 161 24 18 chr6 9092533 9092874 -173322368 - MER2 DNA MER2_type 0 344 2 608 307 18 21 chr6 9092874 9093039 -173322203 - MER115 DNA AcHobo -113 580 415 293 250 0 65 chr6 9093184 9093276 -173321966 + MLT1D LTR MaLR 3 88 -417 3125 148 18 4 chr6 9093418 9093926 -173321316 + MER1A DNA MER1_type 15 529 0 582 172 16 23 chr6 9093926 9094054 -173321188 + MLT1D LTR MaLR 260 386 -119 23877 90 8 6 chr6 9094054 9098455 -173316787 - L1PA7 LINE L1 -2 6467 2061 8574 104 35 0 chr6 9098463 9099720 -173315522 - L1PA7 LINE L1 -5160 1301 1 446 195 144 8 chr6 9099723 9099841 -173315401 + MLT1D LTR MaLR 371 504 -1 395 321 49 5 chr6 9100287 9100511 -173314731 + HsTC2 DNA Tc2 639 872 -1026 21 0 0 0 chr6 9100708 9100729 -173314513 + AT_rich Low_complexity Low_complexity 1 21 0 241 200 22 0 chr6 9101169 9101214 -173314028 - L3b LINE CR1 -116 1467 1422 189 218 168 30 chr6 9101565 9101666 -173313576 + MIR SINE MIR 89 203 -59 22 0 0 0 chr6 9101739 9101761 -173313481 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 9102528 9102557 -173312685 + (GA)n Simple_repeat Simple_repeat 2 30 0 2221 106 0 0 chr6 9102557 9102841 -173312401 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 9103793 9103814 -173311428 + AT_rich Low_complexity Low_complexity 1 21 0 1420 34 11 6 chr6 9105417 9105595 -173309647 - L1PA4 LINE L1 -2 6153 5975 336 0 0 0 chr6 9105595 9105639 -173309603 + L1PA4 LINE L1 5937 5980 -175 522 329 61 4 chr6 9106157 9106388 -173308854 - MIR SINE MIR -8 254 11 564 146 10 0 chr6 9107699 9107795 -173307447 + MLT1A2 LTR MaLR 278 374 0 992 102 28 11 chr6 9107845 9107892 -173307350 + CT-rich Low_complexity Low_complexity 1 227 0 992 102 28 11 chr6 9107892 9108069 -173307173 + CT-rich Low_complexity Low_complexity 1 180 0 507 330 89 0 chr6 9108743 9108979 -173306263 - L2 LINE L2 -958 2356 2100 2295 107 7 0 chr6 9109863 9110172 -173305070 - AluSq SINE Alu -2 311 1 840 262 173 22 chr6 9111322 9111621 -173303621 + MLT1G LTR MaLR 23 276 -314 1917 134 17 76 chr6 9111621 9111978 -173303264 - MER1B DNA MER1_type 0 337 2 840 262 173 22 chr6 9111978 9112170 -173303072 + MLT1G LTR MaLR 276 588 -2 1955 154 20 0 chr6 9113927 9114233 -173301009 - AluSx SINE Alu 0 312 1 1716 181 47 9 chr6 9114453 9114796 -173300446 - MLT1A1 LTR MaLR 0 365 10 2071 140 24 34 chr6 9114817 9115196 -173300046 + THE1C LTR MaLR 1 375 0 272 183 176 65 chr6 9115475 9115617 -173299625 - MER5A DNA MER1_type -6 183 4 247 258 70 39 chr6 9115640 9115768 -173299474 - MIR SINE MIR -59 149 18 279 275 58 0 chr6 9115962 9116082 -173299160 - MER69 DNA AcHobo -7 2519 2393 356 198 25 0 chr6 9116204 9116285 -173298957 - MER69 DNA AcHobo -2443 83 1 878 184 32 16 chr6 9117905 9118090 -173297152 - MER3 DNA MER1_type 0 209 22 463 302 130 28 chr6 9120204 9120565 -173294677 + MLT1I LTR MaLR 3 400 -9 431 264 47 73 chr6 9121310 9121525 -173293717 + MIR SINE MIR 56 262 0 180 219 158 12 chr6 9122156 9122238 -173293004 - MIR SINE MIR -72 190 97 240 344 22 0 chr6 9122266 9122356 -173292886 - L2 LINE L2 0 3313 3222 984 273 79 69 chr6 9122629 9123433 -173291809 + L2 LINE L2 2499 3313 0 2487 186 215 21 chr6 9123756 9124477 -173290765 + pTR5 LTR ERV1 1352 2212 -226 265 305 50 14 chr6 9124660 9124801 -173290441 - MLT1K LTR MaLR -108 480 335 23 0 0 0 chr6 9125127 9125150 -173290092 + AT_rich Low_complexity Low_complexity 1 23 0 1561 207 46 0 chr6 9125264 9125549 -173289693 - AluJo SINE Alu -14 298 1 1922 94 128 0 chr6 9125656 9125922 -173289320 - AluSq SINE Alu -13 300 1 29 0 0 0 chr6 9126801 9126830 -173288412 + AT_rich Low_complexity Low_complexity 1 29 0 1505 54 0 0 chr6 9126833 9127018 -173288224 - L1PA4 LINE L1 -8 6147 5963 1150 225 134 3 chr6 9127298 9127596 -173287646 - MER58B DNA MER1_type -4 337 1 1838 182 12 45 chr6 9128671 9129072 -173286170 - MLT1B LTR MaLR 0 390 3 2284 96 0 0 chr6 9129269 9129561 -173285681 + AluSg SINE Alu 1 292 -18 200 328 30 0 chr6 9130772 9130839 -173284403 - L2 LINE L2 -6 3266 3198 379 276 110 24 chr6 9131140 9131267 -173283975 - L2 LINE L2 -10 3262 3125 1467 189 67 28 chr6 9131556 9131916 -173283326 + MLT1A2 LTR MaLR 1 374 0 1294 268 38 38 chr6 9131940 9132500 -173282742 - MLT2F LTR ERVL -103 560 1 204 163 0 23 chr6 9133252 9133295 -173281947 + A-rich Low_complexity Low_complexity 2 43 0 276 30 0 0 chr6 9133672 9133705 -173281537 + (A)n Simple_repeat Simple_repeat 1 33 0 377 361 95 23 chr6 9134610 9134956 -173280286 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9135482 9136029 -173279213 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9138740 9139094 -173276148 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9139585 9139736 -173275506 - MIR SINE MIR -74 188 46 207 0 0 0 chr6 9142722 9142745 -173272497 + (T)n Simple_repeat Simple_repeat 1 23 0 247 362 0 0 chr6 9143262 9143331 -173271911 - L2 LINE L2 -4 3268 3200 830 209 4 43 chr6 9144992 9145222 -173270020 + pTR5 LTR ERV1 743 963 -1475 * 1255 135 30 11 chr6 9145195 9145462 -173269780 - pTR5 LTR ERV1 -1093 1345 1074 * 4474 119 122 120 chr6 9145447 9147071 -173268171 + pTR5 LTR ERV1 936 2438 0 180 292 21 0 chr6 9148293 9148341 -173266901 - MIR SINE MIR -10 252 204 198 118 0 0 chr6 9149335 9149369 -173265873 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9151149 9151227 -173264015 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9151338 9151715 -173263527 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9152087 9152395 -173262847 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9152523 9152604 -173262638 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9153082 9153277 -173261965 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9153306 9153329 -173261913 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9153371 9153511 -173261731 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9153947 9154378 -173260864 + MER115 DNA AcHobo 2 434 -259 2621 51 0 0 chr6 9154385 9154696 -173260546 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9154796 9154884 -173260358 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9155782 9155806 -173259436 + AT_rich Low_complexity Low_complexity 1 24 0 1290 200 3 7 chr6 9156086 9156306 -173258936 - L1MB3 LINE L1 -2 6181 5961 1990 117 27 20 chr6 9156306 9156477 -173258765 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9156477 9156515 -173258727 + (TG)n Simple_repeat Simple_repeat 2 40 0 1990 117 27 20 chr6 9156515 9156642 -173258600 - AluSx SINE Alu -186 126 1 1290 200 3 7 chr6 9156642 9156711 -173258531 - L1MB3 LINE L1 -222 5961 5893 677 180 0 7 chr6 9156715 9156854 -173258388 - L1MB3 LINE L1 -719 5461 5324 826 250 94 3 chr6 9156854 9157238 -173258004 + MER114 LTR ERV 178 596 -52 1870 90 105 18 chr6 9157759 9158036 -173257206 + AluSq SINE Alu 1 301 -12 2019 124 0 0 chr6 9158400 9158682 -173256560 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9159194 9159218 -173256024 + (CA)n Simple_repeat Simple_repeat 2 25 0 622 368 68 29 chr6 9159714 9160095 -173255147 - L2 LINE L2 -5 3267 2872 995 364 37 23 chr6 9160162 9160939 -173254303 - L2 LINE L2 -514 2800 2013 186 411 18 0 chr6 9161215 9161271 -173253971 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9161601 9161641 -173253601 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 415 286 97 35 chr6 9161641 9161868 -173253374 - L2 LINE L2 -20 3293 3053 461 250 170 9 chr6 9161938 9162162 -173253080 + LTR16C LTR ERVL 232 491 0 1299 257 31 53 chr6 9162520 9163006 -173252236 - LTR53 LTR ERVL -9 510 36 2246 127 0 0 chr6 9165054 9165362 -173249880 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9166056 9166087 -173249155 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9166109 9166139 -173249103 + AT_rich Low_complexity Low_complexity 1 30 0 4505 222 58 40 chr6 9168059 9170799 -173244443 - L1MD1 LINE L1 0 6242 3451 1416 143 4 40 chr6 9170858 9171104 -173244138 - MER1B DNA MER1_type -2374 338 148 1883 127 101 20 chr6 9171104 9171451 -173243791 + THE1C LTR MaLR 1 375 0 1416 143 4 40 chr6 9171451 9171491 -173243751 - MER1B DNA MER1_type -2564 148 108 9075 114 54 11 chr6 9171491 9172967 -173242275 + THE1C-int LTR MaLR 42 1580 0 446 111 12 49 chr6 9172967 9173048 -173242194 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9175342 9175371 -173239871 + AT_rich Low_complexity Low_complexity 1 29 0 553 264 171 39 chr6 9175819 9175901 -173239341 - L2 LINE L2 -1267 2047 1977 1778 208 8 24 chr6 9175901 9176272 -173238970 - MLT1A1 LTR MaLR 0 365 1 553 264 171 39 chr6 9176272 9176447 -173238795 - L2 LINE L2 -1337 1977 1756 2447 93 0 0 chr6 9176450 9176751 -173238491 + AluSg SINE Alu 1 301 -9 730 196 69 0 chr6 9176758 9176931 -173238311 + L1MB1 LINE L1 4748 4932 -1214 2629 45 0 3 chr6 9176971 9177281 -173237961 - AluY SINE Alu -2 309 1 2199 225 34 17 chr6 9177311 9177955 -173237287 - L1MB1 LINE L1 -783 5363 4709 * 3882 150 53 8 chr6 9177953 9178719 -173236523 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9178722 9178748 -173236494 + (TAA)n Simple_repeat Simple_repeat 2 27 0 722 263 202 20 chr6 9178750 9179047 -173236195 - L2 LINE L2 -1625 1689 1339 392 285 73 0 chr6 9179105 9179228 -173236014 - MER58B DNA MER1_type 0 341 210 260 314 0 0 chr6 9179415 9179485 -173235757 - MER63 DNA MER1_type -7 1055 986 260 229 43 0 chr6 9179507 9179577 -173235665 - MER63 DNA MER1_type -123 713 15 479 250 86 0 chr6 9180054 9180182 -173235060 + MIR SINE MIR 86 224 -38 930 328 65 21 chr6 9180210 9180872 -173234370 + L2 LINE L2 2629 3313 0 2316 109 0 3 chr6 9181145 9181458 -173233784 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9181981 9182041 -173233201 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9182426 9182452 -173232790 + AT_rich Low_complexity Low_complexity 1 26 0 596 222 0 0 chr6 9183398 9183506 -173231736 + Tigger3(Golem) DNA MER2_type 1 108 -2921 198 0 0 0 chr6 9183506 9183528 -173231714 + (T)n Simple_repeat Simple_repeat 1 22 0 1960 83 8 0 chr6 9183582 9183848 -173231394 - L1PA8 LINE L1 0 6172 5905 3923 140 28 29 chr6 9183853 9184603 -173230639 + Tigger3(Golem) DNA MER2_type 2281 3029 0 371 266 0 62 chr6 9184605 9184733 -173230509 + L2 LINE L2 3180 3299 -14 293 287 59 30 chr6 9184837 9184938 -173230304 - L2 LINE L2 0 3313 3210 413 222 127 16 chr6 9184984 9185110 -173230132 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9185700 9185730 -173229512 + (CA)n Simple_repeat Simple_repeat 2 31 0 516 157 62 105 chr6 9186380 9186590 -173228652 - L1MA9 LINE L1 -1 6311 6111 342 237 49 105 chr6 9186602 9186775 -173228467 - MIR SINE MIR -62 146 32 312 273 20 40 chr6 9188490 9188589 -173226653 + MIR SINE MIR 82 178 -84 2137 90 0 0 chr6 9189131 9189398 -173225844 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9189583 9189621 -173225621 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 429 267 136 11 chr6 9189644 9189820 -173225422 + MIR SINE MIR 46 243 -19 282 245 59 29 chr6 9189863 9189965 -173225277 - MIR3 SINE MIR -3 205 101 1465 189 172 56 chr6 9189982 9190021 -173225221 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9190021 9190065 -173225177 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1465 189 172 56 chr6 9190065 9190491 -173224751 - MLT2B1 LTR ERVL -33 487 1 1889 155 0 0 chr6 9190676 9190994 -173224248 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9192265 9192326 -173222916 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9193076 9193202 -173222040 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9193247 9193637 -173221605 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9195244 9195416 -173219826 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9196662 9196857 -173218385 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9197451 9197485 -173217757 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9197485 9197794 -173217448 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9197825 9197902 -173217340 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9198598 9198619 -173216623 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9198650 9198715 -173216527 - L1PB1 LINE L1 0 6151 6088 290 331 147 22 chr6 9199780 9199964 -173215278 + MIR SINE MIR 26 232 -30 880 210 23 0 chr6 9199983 9200159 -173215083 + MER5A DNA MER1_type 10 189 0 236 391 0 13 chr6 9200320 9200471 -173214771 - MIR SINE MIR -3 259 111 297 308 8 34 chr6 9200799 9200916 -173214326 + L2 LINE L2 3200 3313 0 442 294 75 37 chr6 9201120 9201307 -173213935 - MIR3 SINE MIR -1 207 14 727 266 29 14 chr6 9201439 9201646 -173213596 + MIR SINE MIR 53 262 0 713 206 0 0 chr6 9202313 9202439 -173212803 + FLAM_C SINE Alu 5 130 -3 223 234 16 23 chr6 9202447 9202575 -173212667 + (TA)n Simple_repeat Simple_repeat 1 127 0 240 35 0 0 chr6 9203797 9203826 -173211416 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 106 4 0 chr6 9205151 9205377 -173209865 - AluSg/x SINE Alu -3 309 83 206 321 0 0 chr6 9206848 9206904 -173208338 - L2 LINE L2 -12 3301 3246 714 264 26 45 chr6 9207382 9207761 -173207481 - L1M4 LINE L1 -2523 3623 3252 195 167 0 0 chr6 9207944 9207986 -173207256 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 272 223 60 18 chr6 9208002 9208168 -173207074 + (TA)n Simple_repeat Simple_repeat 1 173 0 1465 238 108 20 chr6 9210557 9211057 -173204185 + L1M4 LINE L1 3791 4334 -1812 300 200 12 50 chr6 9211123 9211188 -173204054 - MLT1F1 LTR MaLR -452 115 52 710 62 0 71 chr6 9211188 9211300 -173203942 - L1PA7 LINE L1 0 6154 6051 300 200 12 50 chr6 9211300 9211314 -173203928 - MLT1F1 LTR MaLR -515 52 39 1742 167 31 28 chr6 9212039 9212398 -173202844 + MLT1A1 LTR MaLR 6 365 0 550 195 18 44 chr6 9212404 9212517 -173202725 - FLAM_A SINE Alu -20 122 13 500 299 79 25 chr6 9212557 9212798 -173202444 - MIR SINE MIR -5 257 4 1454 169 71 42 chr6 9213475 9213812 -173201430 - MER7A DNA MER2_type -1 345 1 396 315 136 6 chr6 9214009 9214171 -173201071 - MIR SINE MIR -75 187 5 191 290 54 21 chr6 9214230 9214323 -173200919 + MIR SINE MIR 78 173 -89 192 267 67 44 chr6 9216471 9216561 -173198681 - L2 LINE L2 -14 3258 3167 1335 236 49 3 chr6 9216592 9216957 -173198285 + L1M4 LINE L1 3537 3918 -2228 * 6168 213 48 7 chr6 9216936 9219288 -173195954 + L1MB5 LINE L1 3715 6166 -8 473 260 78 0 chr6 9219370 9219524 -173195718 - Tigger6a DNA MER2_type -1 1082 917 9461 176 26 12 chr6 9219524 9222344 -173192898 + L1PA16 LINE L1 3305 6165 -1 3607 219 54 6 chr6 9222344 9223232 -173192010 - Tigger6a DNA MER2_type -138 945 15 903 186 194 75 chr6 9223603 9223929 -173191313 + MSTD LTR MaLR 10 396 0 192 266 147 28 chr6 9223937 9224046 -173191196 + MIR SINE MIR 64 185 -77 244 300 0 0 chr6 9224084 9224154 -173191088 - L2 LINE L2 -9 3263 3194 918 304 88 23 chr6 9324406 9325669 -173089573 - L1ME LINE L1 -4639 1622 113 2094 124 0 3 chr6 9325669 9325968 -173089274 + AluSx SINE Alu 1 298 -14 918 304 88 23 chr6 9325968 9325991 -173089251 - L1ME LINE L1 -6148 113 93 664 316 80 36 chr6 9326015 9326426 -173088816 - L1ME LINE L1 -5618 452 24 865 163 26 0 chr6 9327146 9327299 -173087943 - MER76 LTR ERV -531 157 1 3147 244 82 30 chr6 9327322 9327750 -173087492 - L1MCb LINE L1 -4425 2139 1735 1209 209 141 9 chr6 9327750 9328070 -173087172 - MLT1A1 LTR MaLR 0 365 4 3147 244 82 30 chr6 9328070 9329663 -173085579 - L1MCb LINE L1 -4829 1735 1 356 245 43 39 chr6 9329824 9330056 -173085186 - L1ME LINE L1 -5069 1565 1242 22 35 0 0 chr6 9330136 9330165 -173085077 + AT_rich Low_complexity Low_complexity 1 29 0 460 294 55 14 chr6 9331161 9331379 -173083863 - MER110A LTR ERV1 -23 445 219 202 273 23 23 chr6 9332867 9332995 -173082247 + (TA)n Simple_repeat Simple_repeat 2 129 0 340 296 49 118 chr6 9333026 9333313 -173081929 + L2 LINE L2 3045 3311 -2 552 257 13 41 chr6 9334019 9334272 -173080970 + L2 LINE L2 3005 3313 0 23 0 0 0 chr6 9334600 9334623 -173080619 + AT_rich Low_complexity Low_complexity 1 23 0 687 266 142 88 chr6 9334636 9335045 -173080197 - L2 LINE L2 -902 2412 1982 319 296 20 0 chr6 9335561 9335659 -173079583 - MIR SINE MIR -13 249 150 306 148 0 0 chr6 9336294 9336348 -173078894 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1135 267 52 51 chr6 9336487 9336631 -173078611 - L1MCc LINE L1 -4509 2508 2366 1057 55 7 7 chr6 9336631 9336777 -173078465 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 1135 267 52 51 chr6 9336777 9337386 -173077856 - L1MCc LINE L1 -4651 2366 1605 2544 296 89 38 chr6 9337462 9338191 -173077051 - L1MCc LINE L1 -4851 1571 881 1355 228 18 97 chr6 9338191 9338748 -173076494 + LTR40a LTR ERVL 5 517 -2 2544 296 89 38 chr6 9338748 9339420 -173075822 - L1MCc LINE L1 -5541 881 96 905 137 95 6 chr6 9339425 9339593 -173075649 + MLT1A1 LTR MaLR 3 185 -180 934 228 10 5 chr6 9339791 9339988 -173075254 + MLT1A1 LTR MaLR 168 365 0 230 374 24 0 chr6 9340623 9340706 -173074536 + MIR3 SINE MIR 123 207 -1 288 368 17 0 chr6 9340735 9340852 -173074390 - MIR3 SINE MIR -8 200 82 283 362 27 27 chr6 9340919 9341104 -173074138 + MIR SINE MIR 7 191 -71 516 170 226 0 chr6 9342645 9342751 -173072491 - FLAM_C SINE Alu -3 130 1 1326 179 16 76 chr6 9343576 9344017 -173071225 - L1MB1 LINE L1 -5 6163 5697 2352 106 3 0 chr6 9344017 9344363 -173070879 - AluSq SINE Alu 0 347 1 1326 179 16 76 chr6 9344363 9345020 -173070222 - L1MB1 LINE L1 -471 5697 4981 28 48 0 0 chr6 9345379 9345421 -173069821 + AT_rich Low_complexity Low_complexity 1 42 0 243 299 45 0 chr6 9346230 9346297 -173068945 + L2 LINE L2 3226 3295 -18 1382 202 83 9 chr6 9346664 9347025 -173068217 + MLT2B1 LTR ERVL 1 397 0 1880 167 0 34 chr6 9347088 9347411 -173067831 - AluJb SINE Alu 0 312 1 23 33 0 0 chr6 9347483 9347513 -173067729 + AT_rich Low_complexity Low_complexity 1 30 0 1949 151 148 3 chr6 9347923 9348295 -173066947 - MSTA LTR MaLR -2 426 1 476 213 133 33 chr6 9348377 9348527 -173066715 + MIR SINE MIR 28 192 -70 447 221 67 67 chr6 9348683 9348832 -173066410 - L2 LINE L2 -6 3307 3159 2168 228 8 4 chr6 9348833 9349356 -173065886 + L1MA9 LINE L1 3764 4288 -1858 1208 218 14 59 chr6 9349397 9349823 -173065419 + L1MA9 LINE L1 5868 6274 -38 2397 102 0 6 chr6 9351178 9351493 -173063749 + AluSq SINE Alu 1 313 0 1020 221 14 5 chr6 9352225 9352442 -173062800 - MER20 DNA MER1_type 0 219 1 702 145 0 0 chr6 9353676 9353814 -173061428 + (CA)n Simple_repeat Simple_repeat 1 138 0 3324 163 56 22 chr6 9354201 9354668 -173060574 - L1PB4 LINE L1 -3 6153 5653 1706 143 0 0 chr6 9354668 9354919 -173060323 - AluSc SINE Alu -20 289 39 3324 163 56 22 chr6 9354919 9355145 -173060097 - L1PB4 LINE L1 -503 5653 5436 198 103 0 0 chr6 9355520 9355549 -173059693 + (GGAGAA)n Simple_repeat Simple_repeat 6 34 0 338 266 12 12 chr6 9355947 9356116 -173059126 + CT-rich Low_complexity Low_complexity 1 169 0 237 289 24 0 chr6 9356181 9356264 -173058978 - L2 LINE L2 -26 3287 3203 2322 63 0 13 chr6 9357458 9357761 -173057481 + AluY SINE Alu 1 299 -12 6079 120 28 19 chr6 9358538 9359983 -173055259 - L1PA13 LINE L1 -6 6157 4695 22 0 0 0 chr6 9359986 9360008 -173055234 + AT_rich Low_complexity Low_complexity 1 22 0 2411 136 64 5 chr6 9360315 9360719 -173054523 + MSTA LTR MaLR 1 428 0 25 31 0 0 chr6 9360908 9360940 -173054302 + AT_rich Low_complexity Low_complexity 1 32 0 192 158 0 0 chr6 9361644 9361682 -173053560 + A-rich Low_complexity Low_complexity 2 39 0 221 136 0 23 chr6 9362315 9362359 -173052883 + (TCTCCC)n Simple_repeat Simple_repeat 4 46 0 2014 138 125 33 chr6 9362724 9363116 -173052126 + MSTA LTR MaLR 1 428 0 338 207 134 0 chr6 9363904 9363986 -173051256 - MER94 DNA DNA -41 93 1 667 212 21 93 chr6 9364153 9364389 -173050853 - MER20 DNA MER1_type 0 219 1 285 368 0 0 chr6 9364556 9364662 -173050580 + MIR SINE MIR 52 157 -105 204 67 0 0 chr6 9365037 9365067 -173050175 + (T)n Simple_repeat Simple_repeat 1 30 0 230 191 32 48 chr6 9365082 9365145 -173050097 - L2 LINE L2 -61 3252 3191 3542 141 30 73 chr6 9365340 9366050 -173049192 + LTR58 LTR ERV1 1 679 0 2154 109 0 3 chr6 9366646 9366940 -173048302 - AluSx SINE Alu -19 293 1 2239 104 0 0 chr6 9367541 9367838 -173047404 - AluSq SINE Alu -16 297 1 2005 168 5 35 chr6 9367894 9368298 -173046944 - MER57A LTR ERV1 0 403 12 1864 103 4 27 chr6 9368552 9368814 -173046428 - AluSx SINE Alu -13 299 44 22 0 0 0 chr6 9368823 9368845 -173046397 + AT_rich Low_complexity Low_complexity 1 22 0 199 241 29 176 chr6 9368950 9369120 -173046122 + MIR SINE MIR 89 233 -29 583 79 0 0 chr6 9369190 9369279 -173045963 - L1P LINE L1 -796 5355 5267 5000 117 1 6 chr6 9369279 9369712 -173045530 + L1PB1 LINE L1 5362 5791 -360 351 0 0 0 chr6 9369712 9369751 -173045491 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5000 117 1 6 chr6 9369751 9370110 -173045132 + L1PB1 LINE L1 5791 6150 -1 573 40 0 0 chr6 9370189 9370264 -173044978 - MER41B LTR ERV1 -85 550 476 246 349 63 37 chr6 9370295 9370484 -173044758 + L2 LINE L2 2888 3081 -191 21 0 0 0 chr6 9370736 9370757 -173044485 + AT_rich Low_complexity Low_complexity 1 21 0 304 100 80 0 chr6 9370759 9370809 -173044433 - U2 snRNA snRNA -134 54 1 24 0 0 0 chr6 9371099 9371123 -173044119 + AT_rich Low_complexity Low_complexity 1 24 0 2382 76 6 19 chr6 9371132 9371447 -173043795 + AluY SINE Alu 1 311 0 855 78 0 0 chr6 9371447 9371563 -173043679 + (TA)n Simple_repeat Simple_repeat 2 117 0 1522 185 176 45 chr6 9371571 9372064 -173043178 + L1MC3 LINE L1 6688 7245 -540 1135 168 17 0 chr6 9372073 9372305 -173042937 + L1MC3 LINE L1 7539 7774 -11 853 0 0 0 chr6 9372979 9373075 -173042167 + AluYa5/8 SINE Alu 216 311 0 940 227 112 51 chr6 9373086 9373399 -173041843 + MLT1D LTR MaLR 23 354 -151 27 29 0 0 chr6 9373803 9373837 -173041405 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr6 9374331 9374357 -173040885 + AT_rich Low_complexity Low_complexity 1 26 0 275 221 15 0 chr6 9375273 9375341 -173039901 + CT-rich Low_complexity Low_complexity 2 70 0 186 43 0 0 chr6 9375354 9375377 -173039865 + (CA)n Simple_repeat Simple_repeat 2 24 0 2115 125 3 0 chr6 9375711 9376008 -173039234 + AluSx SINE Alu 1 298 -14 231 405 68 35 chr6 9376024 9376335 -173038907 - L2 LINE L2 -9 3263 2943 210 71 0 0 chr6 9376347 9376375 -173038867 + (A)n Simple_repeat Simple_repeat 1 28 0 194 347 61 38 chr6 9376563 9376906 -173038336 - L2 LINE L2 -632 2682 2332 22 0 0 0 chr6 9378665 9378687 -173036555 + AT_rich Low_complexity Low_complexity 1 22 0 983 219 159 4 chr6 9378687 9378920 -173036322 - AluSx SINE Alu -18 294 26 24 32 0 0 chr6 9378956 9378987 -173036255 + AT_rich Low_complexity Low_complexity 1 31 0 2480 58 0 0 chr6 9379604 9379895 -173035347 + AluY SINE Alu 1 291 -20 45 19 0 0 chr6 9382124 9382176 -173033066 + AT_rich Low_complexity Low_complexity 1 52 0 2202 113 0 0 chr6 9382177 9382469 -173032773 - AluSx SINE Alu -20 292 1 4477 116 91 127 chr6 9382474 9384054 -173031188 + pTR5 LTR ERV1 741 2438 0 271 280 96 16 chr6 9384125 9384250 -173030992 - MLT1G LTR MaLR -6 536 402 800 279 21 18 chr6 9384359 9384642 -173030600 - MLT1G LTR MaLR -297 293 10 193 373 111 30 chr6 9384720 9384991 -173030251 - L2 LINE L2 -8 3264 2972 324 0 0 0 chr6 9385019 9385055 -173030187 + (TG)n Simple_repeat Simple_repeat 2 37 0 241 353 150 38 chr6 9385184 9385583 -173029659 - L2 LINE L2 -556 2758 2315 596 222 205 10 chr6 9386185 9386473 -173028769 + L1MCa LINE L1 1253 1596 -4830 1291 284 39 11 chr6 9386594 9387228 -173028014 - L1MCc LINE L1 -4423 2699 1897 * 2228 245 127 19 chr6 9387210 9388614 -173026628 - L1MCb LINE L1 -4278 2467 765 231 325 52 45 chr6 9388734 9388806 -173026436 - MIR SINE MIR -91 171 101 2342 108 51 14 chr6 9388806 9389157 -173026085 + THE1B LTR MaLR 1 364 0 231 325 52 45 chr6 9389157 9389238 -173026004 - MIR SINE MIR -161 101 17 400 160 90 0 chr6 9389561 9389661 -173025581 - L1MA9 LINE L1 -2 6310 6202 622 136 41 41 chr6 9389663 9389810 -173025432 + L1MA9 LINE L1 6079 6225 -87 650 301 47 50 chr6 9389984 9390306 -173024936 - L1MCb LINE L1 -5480 565 245 1331 169 16 4 chr6 9390328 9390570 -173024672 + MLT2D LTR ERVL 1 245 -169 267 31 0 0 chr6 9390586 9390618 -173024624 + (CA)n Simple_repeat Simple_repeat 1 32 0 1415 278 56 7 chr6 9390645 9391236 -173024006 - L1MCc LINE L1 -4929 1494 875 2373 58 3 26 chr6 9391336 9391646 -173023596 - AluY SINE Alu -8 303 1 197 389 29 29 chr6 9392765 9392904 -173022338 + MIR3 SINE MIR 4 142 -66 2292 95 0 0 chr6 9392983 9393277 -173021965 + AluSg SINE Alu 1 294 -16 2090 130 0 10 chr6 9394689 9394990 -173020252 - AluSx SINE Alu -14 298 1 204 111 0 0 chr6 9395850 9395886 -173019356 + (T)n Simple_repeat Simple_repeat 1 36 0 630 214 98 42 chr6 9395895 9396234 -173019008 + MSTD LTR MaLR 1 395 -1 22 35 0 0 chr6 9396592 9396621 -173018621 + AT_rich Low_complexity Low_complexity 1 29 0 1521 201 40 3 chr6 9396720 9397019 -173018223 + AluJo SINE Alu 1 310 -2 217 320 117 0 chr6 9397076 9397179 -173018063 - L2 LINE L2 0 3313 3199 2164 95 3 43 chr6 9397934 9398260 -173016982 + AluSp SINE Alu 1 313 0 235 293 139 43 chr6 9398528 9398736 -173016506 + L2 LINE L2 669 896 -2418 189 0 0 0 chr6 9398736 9398757 -173016485 + (T)n Simple_repeat Simple_repeat 1 21 0 939 143 0 0 chr6 9398824 9398971 -173016271 - AluSg/x SINE Alu 0 312 166 6317 154 203 33 chr6 9398971 9400421 -173014821 + pTR5 LTR ERV1 743 2438 0 1269 251 116 30 chr6 9400753 9401244 -173013998 - MLT1F LTR MaLR -7 535 3 333 355 17 17 chr6 9401379 9401551 -173013691 + L2 LINE L2 1840 2011 -1303 1315 132 14 5 chr6 9401575 9401788 -173013454 - L1PB3 LINE L1 -2 6152 5938 2002 120 14 3 chr6 9401788 9402079 -173013163 - AluSp SINE Alu -19 294 1 507 177 0 0 chr6 9402525 9402604 -173012638 - AluSg/x SINE Alu -21 288 210 243 301 32 32 chr6 9404464 9404557 -173010685 - MLT1J LTR MaLR -193 318 226 396 351 71 54 chr6 9404813 9405052 -173010190 + L2 LINE L2 3017 3259 -13 371 287 0 0 chr6 9405416 9405503 -173009739 - MIR3 SINE MIR -30 178 92 1887 167 7 0 chr6 9405523 9405829 -173009413 + AluJb SINE Alu 1 308 -4 1697 155 0 126 chr6 9406207 9406488 -173008754 - MLT1B LTR MaLR 0 390 183 2138 99 0 7 chr6 9406488 9406800 -173008442 + AluSc SINE Alu 1 310 0 1697 155 0 126 chr6 9406800 9406963 -173008279 - MLT1B LTR MaLR -207 183 1 335 220 154 0 chr6 9407283 9407374 -173007868 + MIR SINE MIR 72 176 -86 2125 116 0 0 chr6 9407436 9407721 -173007521 - AluSc SINE Alu -24 285 1 1053 156 17 0 chr6 9409960 9410140 -173005102 + L1PA16 LINE L1 5975 6157 -9 208 195 167 34 chr6 9411357 9411455 -173003787 + MIR SINE MIR 75 181 -27 25 31 0 0 chr6 9411627 9411659 -173003583 + AT_rich Low_complexity Low_complexity 1 32 0 5590 93 2 6 chr6 9412282 9413076 -173002166 - L1PA13 LINE L1 -1 6162 5372 201 74 0 0 chr6 9413372 9413399 -173001843 + (GAGAA)n Simple_repeat Simple_repeat 4 30 0 336 356 52 7 chr6 9414232 9414541 -173000701 + L1MEc LINE L1 1488 1810 -4586 287 309 0 0 chr6 9414573 9414657 -173000585 - L1MEc LINE L1 -2424 3791 3708 505 319 35 45 chr6 9414728 9414988 -173000254 + MIR SINE MIR 6 251 -11 429 355 71 24 chr6 9415055 9415393 -172999849 - LTR16A LTR ERVL -5 445 92 206 327 0 0 chr6 9415458 9415513 -172999729 + C-rich Low_complexity Low_complexity 1 55 0 33 0 0 0 chr6 9415807 9415840 -172999402 + AT_rich Low_complexity Low_complexity 1 33 0 499 279 19 13 chr6 9417125 9417279 -172997963 - L2 LINE L2 0 3313 3159 3688 279 80 39 chr6 9418652 9420986 -172994256 - L1MEc LINE L1 -3933 2463 35 2198 50 8 0 chr6 9421325 9421585 -172993657 - AluY SINE Alu -12 299 38 610 288 65 78 chr6 9423526 9423665 -172991577 - L2 LINE L2 -18 3295 3156 390 42 0 0 chr6 9423665 9423713 -172991529 + (CATA)n Simple_repeat Simple_repeat 3 50 0 610 288 65 78 chr6 9423713 9424297 -172990945 - L2 LINE L2 -157 3156 2575 657 259 85 0 chr6 9424332 9424533 -172990709 - MER46C DNA MER2_type -118 220 3 2045 123 33 0 chr6 9424816 9425117 -172990125 - AluSq SINE Alu -2 311 1 1885 175 46 3 chr6 9426867 9427238 -172988004 - MLT1B LTR MaLR -3 387 1 447 87 0 0 chr6 9427350 9427419 -172987823 + (TG)n Simple_repeat Simple_repeat 2 70 0 359 234 29 91 chr6 9428313 9428488 -172986754 + MLT1K LTR MaLR 411 574 -14 24 0 0 0 chr6 9428505 9428529 -172986713 + AT_rich Low_complexity Low_complexity 1 24 0 1997 138 53 0 chr6 9429761 9430080 -172985162 + MER7A DNA MER2_type 1 334 -12 25 31 0 0 chr6 9431422 9431454 -172983788 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr6 9431590 9431632 -172983610 + AT_rich Low_complexity Low_complexity 1 42 0 2250 113 0 13 chr6 9432037 9432347 -172982895 - AluSg SINE Alu -3 307 2 202 136 0 23 chr6 9433002 9433046 -172982196 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 24 0 0 0 chr6 9433220 9433244 -172981998 + AT_rich Low_complexity Low_complexity 1 24 0 744 140 19 76 chr6 9433404 9433445 -172981797 - L1MDa LINE L1 -4602 1938 1896 2725 26 3 0 chr6 9433445 9433755 -172981487 - AluY SINE Alu 0 311 1 744 140 19 76 chr6 9433755 9433870 -172981372 - L1MDa LINE L1 -4644 1896 1791 236 223 0 39 chr6 9433885 9433988 -172981254 + CT-rich Low_complexity Low_complexity 3 101 0 2292 189 50 45 chr6 9433992 9434678 -172980564 - L1MDa LINE L1 -4797 1743 1055 984 197 11 0 chr6 9434675 9434853 -172980389 - L1MDa LINE L1 -6351 189 10 * 542 267 124 10 chr6 9434848 9435155 -172980087 - L1M4 LINE L1 -3657 2489 2148 * 353 208 17 22 chr6 9435378 9435556 -172979686 + (TA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr6 9435835 9435856 -172979386 + AT_rich Low_complexity Low_complexity 1 21 0 374 309 80 64 chr6 9435864 9436288 -172978954 - L1 LINE L1 -1800 4346 3916 327 230 30 96 chr6 9436293 9436428 -172978814 - LTR16A1 LTR ERVL -12 445 320 23 0 0 0 chr6 9437009 9437032 -172978210 + AT_rich Low_complexity Low_complexity 1 23 0 1741 112 9 0 chr6 9437112 9437344 -172977898 - AluSg SINE Alu -76 234 1 183 364 41 16 chr6 9438679 9438800 -172976442 + L2 LINE L2 3167 3290 -23 189 0 0 0 chr6 9440044 9440065 -172975177 + (TG)n Simple_repeat Simple_repeat 2 22 0 210 143 0 0 chr6 9440124 9440159 -172975083 + (TG)n Simple_repeat Simple_repeat 2 36 0 704 207 47 21 chr6 9441079 9441272 -172973970 - LTR48 LTR ERV1 0 787 590 3394 138 16 12 chr6 9441299 9441862 -172973380 - Tigger4(Zombi) DNA MER2_type 0 2731 2167 180 176 0 0 chr6 9441864 9441898 -172973344 + (CATA)n Simple_repeat Simple_repeat 2 35 0 301 173 0 0 chr6 9441898 9441950 -172973292 - L1MC4 LINE L1 -1339 6703 6652 1837 162 28 0 chr6 9441962 9442252 -172972990 - AluJb SINE Alu -10 302 5 329 256 81 0 chr6 9442287 9442373 -172972869 - Tigger4(Zombi) DNA MER2_type -2638 93 1 1915 202 84 16 chr6 9442389 9442840 -172972402 - LTR48 LTR ERV1 -305 482 1 292 289 74 44 chr6 9443282 9443417 -172971825 + MIR3 SINE MIR 42 180 -28 234 227 106 0 chr6 9443987 9444053 -172971189 + MIR SINE MIR 134 206 -56 269 279 11 0 chr6 9446645 9446751 -172968491 + CT-rich Low_complexity Low_complexity 1 185 0 343 274 105 20 chr6 9446817 9446970 -172968272 + MIR3 SINE MIR 41 206 -2 200 365 16 0 chr6 9447706 9447769 -172967473 + MIR SINE MIR 35 98 -110 2121 119 3 3 chr6 9449642 9449937 -172965305 + AluY SINE Alu 1 295 -16 194 174 22 0 chr6 9452988 9453034 -172962208 + (CATA)n Simple_repeat Simple_repeat 2 48 0 264 326 22 0 chr6 9453087 9453179 -172962063 - MIR SINE MIR -77 131 38 315 0 0 0 chr6 9453247 9453282 -172961960 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 167 0 0 chr6 9453282 9453330 -172961912 + (TA)n Simple_repeat Simple_repeat 1 48 0 28 29 0 0 chr6 9455038 9455073 -172960169 + AT_rich Low_complexity Low_complexity 1 35 0 257 347 41 24 chr6 9455748 9455918 -172959324 - MIR3 SINE MIR -8 200 28 357 306 65 9 chr6 9456685 9456793 -172958449 - MIR SINE MIR -116 146 33 264 231 0 0 chr6 9458058 9458110 -172957132 + L2 LINE L2 3261 3312 -1 21 0 0 0 chr6 9458565 9458586 -172956656 + AT_rich Low_complexity Low_complexity 1 21 0 1050 115 0 16 chr6 9458759 9458941 -172956301 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 701 172 14 0 chr6 9458944 9459089 -172956153 + CT-rich Low_complexity Low_complexity 3 149 0 330 260 65 22 chr6 9459947 9460178 -172955064 + L1M4 LINE L1 3039 3279 -2867 2246 138 74 10 chr6 9460259 9460665 -172954577 - MSTB1 LTR MaLR 0 432 1 1869 209 117 13 chr6 9460819 9461365 -172953877 - L1MC2 LINE L1 -6 7976 6239 368 308 0 0 chr6 9461368 9461475 -172953767 - MLT1F1 LTR MaLR -460 107 1 661 229 123 50 chr6 9461481 9461783 -172953459 - L1MD3 LINE L1 -727 7268 6945 488 260 64 101 chr6 9461810 9462387 -172952855 - L1MC4 LINE L1 -17 8025 7470 628 222 39 6 chr6 9462471 9462651 -172952591 - LTR16A1 LTR ERVL 0 457 272 256 262 0 106 chr6 9462720 9462861 -172952381 - LTR16A LTR ERVL -232 218 93 1434 285 118 16 chr6 9462956 9463662 -172951580 - L1MC4a LINE L1 -548 7260 6483 1258 256 149 47 chr6 9463864 9464633 -172950609 - L1MC4a LINE L1 -1578 6230 5383 364 281 113 45 chr6 9464684 9464976 -172950266 - L1MC4a LINE L1 -3171 2975 2664 384 298 62 13 chr6 9465315 9465588 -172949654 + L1M4 LINE L1 5258 5512 -662 931 281 129 14 chr6 9466173 9466738 -172948504 + L1ME3A LINE L1 2305 2934 -3212 2410 266 124 24 chr6 9466749 9468046 -172947196 + L1ME3A LINE L1 3353 4518 -1652 2262 108 7 7 chr6 9468046 9468353 -172946889 + AluSx SINE Alu 1 307 -5 2410 266 124 24 chr6 9468353 9469593 -172945649 + L1ME3A LINE L1 4518 6155 -15 261 74 37 19 chr6 9469862 9469916 -172945326 + (TG)n Simple_repeat Simple_repeat 2 56 0 4719 59 3 0 chr6 9472524 9473117 -172942125 - L1PA6 LINE L1 0 6154 5560 407 331 66 13 chr6 9475315 9475466 -172939776 - L3 LINE CR1 -111 1466 1308 348 334 49 0 chr6 9475921 9476044 -172939198 + MIR SINE MIR 34 162 -65 192 229 0 21 chr6 9476223 9476271 -172938971 - L2 LINE L2 -1 3312 3266 246 291 58 0 chr6 9476304 9476390 -172938852 - MIR SINE MIR -14 248 158 426 121 0 0 chr6 9478744 9478810 -172936432 + (TG)n Simple_repeat Simple_repeat 2 67 0 979 175 0 0 chr6 9478894 9479054 -172936188 - FRAM SINE Alu -5 161 2 252 314 9 38 chr6 9479606 9479711 -172935531 + MER5A DNA MER1_type 85 186 -3 1786 151 7 10 chr6 9480235 9480533 -172934709 + AluSq SINE Alu 1 297 -16 335 280 56 28 chr6 9480765 9480872 -172934370 - L2 LINE L2 -4 3309 3200 2454 222 53 19 chr6 9481209 9481834 -172933408 - MER82 DNA MER2_type -6 647 2 1495 169 21 71 chr6 9481955 9482292 -172932950 - L1MA9 LINE L1 -418 5894 5575 435 224 43 17 chr6 9482284 9482400 -172932842 + L1MA9 LINE L1 6101 6219 -93 * 287 219 24 0 chr6 9482446 9482528 -172932714 + L1MC4 LINE L1 6615 6698 -1344 2145 167 0 8 chr6 9484080 9484445 -172930797 + MLT1A1 LTR MaLR 4 365 0 2429 71 0 0 chr6 9484603 9484899 -172930343 - AluY SINE Alu -15 296 1 475 183 0 0 chr6 9486379 9486461 -172928781 + MLT1E1 LTR MaLR 2 83 -571 226 236 228 47 chr6 9486542 9486669 -172928573 + MLT1E1 LTR MaLR 240 389 -235 2378 143 26 3 chr6 9486685 9487064 -172928178 + MSTA LTR MaLR 41 428 0 872 244 71 0 chr6 9487064 9487289 -172927953 + MLT1E1 LTR MaLR 413 653 -1 242 293 7 82 chr6 9487857 9488004 -172927238 - L1ME LINE L1 -361 5760 5625 22 35 0 0 chr6 9488306 9488335 -172926907 + AT_rich Low_complexity Low_complexity 1 29 0 194 253 0 11 chr6 9488338 9488433 -172926809 + (TA)n Simple_repeat Simple_repeat 1 94 0 258 32 0 0 chr6 9488715 9488746 -172926496 + (TG)n Simple_repeat Simple_repeat 2 32 0 2152 109 0 3 chr6 9488802 9489095 -172926147 + AluSc SINE Alu 1 292 -17 321 280 30 10 chr6 9491123 9491223 -172924019 - MER5A DNA MER1_type -1 188 87 973 114 0 0 chr6 9493089 9493220 -172922022 + AluSg/x SINE Alu 146 276 -36 705 131 0 0 chr6 9493224 9493323 -172921919 - AluS SINE Alu -213 99 1 1557 155 72 72 chr6 9493473 9493534 -172921708 - THE1C LTR MaLR 0 375 315 2464 54 3 0 chr6 9493534 9493830 -172921412 - AluY SINE Alu -14 297 1 1557 155 72 72 chr6 9493830 9494143 -172921099 - THE1C LTR MaLR -59 316 1 327 85 0 0 chr6 9495016 9495063 -172920179 + (TG)n Simple_repeat Simple_repeat 2 48 0 1658 228 20 15 chr6 9495763 9496157 -172919085 + MSTD LTR MaLR 1 396 0 203 314 20 0 chr6 9497041 9497092 -172918150 + L2 LINE L2 3143 3194 -78 1194 202 7 18 chr6 9500232 9500518 -172914724 + L1PA16 LINE L1 5882 6163 -3 1098 195 75 99 chr6 9500542 9500958 -172914284 - MLT1D LTR MaLR -52 453 48 1163 237 130 75 chr6 9501020 9501349 -172913893 - L1MC4 LINE L1 -210 7832 7522 1853 162 52 16 chr6 9501349 9501732 -172913510 + MLT2C1 LTR ERVL 1 397 0 1163 237 130 75 chr6 9501732 9502171 -172913071 - L1MC4 LINE L1 -520 7522 7022 493 235 81 27 chr6 9502216 9502365 -172912877 - MER63 DNA MER1_type -276 786 4 972 220 11 51 chr6 9502370 9502391 -172912851 - L1MC4 LINE L1 -1015 7027 7007 2085 103 7 13 chr6 9502391 9502691 -172912551 - AluSg1 SINE Alu -11 298 1 972 220 11 51 chr6 9502691 9502942 -172912300 - L1MC4 LINE L1 -1035 7007 6766 323 134 110 37 chr6 9502958 9503040 -172912202 - L1ME LINE L1 -528 5642 5555 1164 284 33 79 chr6 9503048 9503868 -172911374 + L1MEc LINE L1 44 825 -5571 2678 79 26 5 chr6 9503869 9504260 -172910982 + MLT2A1 LTR ERVL 1 399 -45 380 208 0 5 chr6 9504261 9504634 -172910608 + (TA)n Simple_repeat Simple_repeat 1 371 0 326 194 32 0 chr6 9504647 9504899 -172910343 + (TAGA)n Simple_repeat Simple_repeat 1 260 0 297 230 0 0 chr6 9504900 9505078 -172910164 + (TA)n Simple_repeat Simple_repeat 1 178 0 300 113 38 0 chr6 9505098 9505151 -172910091 + MLT2A1 LTR ERVL 399 453 0 39578 76 13 14 chr6 9505152 9508188 -172907054 + HERVL-A1 LTR ERVL 2 3119 -2535 189 258 56 45 chr6 9508188 9508277 -172906965 - L2 LINE L2 -620 2694 2605 39578 76 13 14 chr6 9508277 9510811 -172904431 + HERVL-A1 LTR ERVL 3119 5654 0 2535 88 39 5 chr6 9510814 9511198 -172904044 + MLT2A1 LTR ERVL 4 400 -44 257 83 83 0 chr6 9511228 9511276 -172903966 + HERVL LTR ERVL 5459 5510 -144 190 54 27 27 chr6 9511296 9511333 -172903909 + (TA)n Simple_repeat Simple_repeat 2 38 0 403 55 0 0 chr6 9511378 9511433 -172903809 + MLT2A1 LTR ERVL 399 453 0 1001 297 67 42 chr6 9511433 9512011 -172903231 + L1MEc LINE L1 822 1435 -4961 2281 119 0 0 chr6 9512011 9512323 -172902919 + AluSq SINE Alu 1 312 -1 1001 297 67 42 chr6 9512323 9512717 -172902525 + L1MEc LINE L1 1435 1818 -4578 359 175 50 0 chr6 9512827 9512907 -172902335 + L1MEc LINE L1 1993 2076 -4320 315 201 112 45 chr6 9512916 9513050 -172902192 + L1MEc LINE L1 2834 2976 -3239 1201 225 87 37 chr6 9513180 9513779 -172901463 - L1MC4a LINE L1 -1193 6615 6187 369 127 0 0 chr6 9513790 9513845 -172901397 - LTR40a LTR ERVL 0 519 465 476 212 0 0 chr6 9513865 9513978 -172901264 + L1MEc LINE L1 1615 1727 -4669 402 207 35 14 chr6 9514028 9514173 -172901069 + GA-rich Low_complexity Low_complexity 2 149 0 894 285 51 42 chr6 9514173 9514527 -172900715 - LTR40b LTR ERVL -105 357 1 883 241 72 4 chr6 9514527 9514763 -172900479 - HERVL40 LTR ERVL 0 5530 5279 374 246 22 0 chr6 9515276 9515414 -172899828 - L1MEc LINE L1 -2197 4018 3878 275 204 0 32 chr6 9515416 9515509 -172899733 - L1MEc LINE L1 -4128 2268 2179 349 224 158 40 chr6 9515682 9515834 -172899408 - L1MEc LINE L1 -5167 1229 1060 331 280 59 27 chr6 9515848 9516219 -172899023 - L1MEc LINE L1 -5162 1043 661 375 296 35 66 chr6 9516571 9516889 -172898353 - L1MEc LINE L1 -6053 343 36 207 308 103 17 chr6 9516944 9517061 -172898181 + MIR3 SINE MIR 73 199 -9 249 108 0 0 chr6 9517865 9517902 -172897340 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 6384 45 13 5 chr6 9518596 9519387 -172895855 + L1PA7 LINE L1 5346 6142 -12 593 265 93 34 chr6 9519590 9519651 -172895591 + L1MC5 LINE L1 24 80 -6343 1371 163 132 0 chr6 9519651 9519754 -172895488 + AluJo SINE Alu 1 89 -223 201 39 0 0 chr6 9519754 9519780 -172895462 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 9519780 9519933 -172895309 + AluJo SINE Alu 89 291 -21 593 265 93 34 chr6 9519933 9520279 -172894963 + L1MC5 LINE L1 80 455 -5968 242 352 173 11 chr6 9520592 9520876 -172894366 + L1MC5 LINE L1 868 1197 -5226 513 159 53 0 chr6 9520946 9521097 -172894145 + GA-rich Low_complexity Low_complexity 2 160 0 554 221 6 22 chr6 9521111 9521292 -172893950 + GA-rich Low_complexity Low_complexity 1 178 0 2018 266 68 45 chr6 9521303 9523985 -172891257 + L1MC5 LINE L1 1246 4185 -2756 1043 270 64 13 chr6 9523991 9524447 -172890795 + L1MC5 LINE L1 4720 5198 -1743 1930 246 26 15 chr6 9524467 9525576 -172889666 + L1MC5 LINE L1 5620 6194 -747 209 330 112 41 chr6 9525598 9525795 -172889447 - L2 LINE L2 -742 2572 2362 325 196 10 21 chr6 9526460 9526557 -172888685 + (TATATG)n Simple_repeat Simple_repeat 2 97 0 1007 193 103 29 chr6 9527329 9527708 -172887534 + L1MC5 LINE L1 8318 8724 -32 406 261 119 45 chr6 9527753 9527929 -172887313 - MIR SINE MIR -54 208 20 236 312 106 35 chr6 9528423 9528593 -172886649 + MIR3 SINE MIR 4 185 -23 2261 188 58 42 chr6 9530406 9530955 -172884287 + MER74A LTR ERVL 1 558 0 1669 209 90 2 chr6 9531008 9531409 -172883833 + LTR32 LTR ERVL 36 471 0 1269 123 142 105 chr6 9531647 9532147 -172883095 + LTR18B LTR ERVL 2 614 0 311 292 68 19 chr6 9532551 9532712 -172882530 - ERVL-A1 LTR ERVL -715 5049 4881 416 337 49 11 chr6 9533477 9533744 -172881498 - ERVL-A1 LTR ERVL -1698 3956 3680 1906 148 7 0 chr6 9533857 9534134 -172881108 + AluSx SINE Alu 11 289 -23 268 315 37 9 chr6 9534319 9534427 -172880815 - ERVL-A1 LTR ERVL -2251 3403 3293 480 315 26 30 chr6 9534477 9534709 -172880533 - ERVL-A1 LTR ERVL -2007 2989 2759 262 381 52 8 chr6 9534917 9535166 -172880076 - ERVL-A1 LTR ERVL -4083 1681 1422 430 305 121 42 chr6 9535784 9536355 -172878887 - ERVL-A1 LTR ERVL -4374 622 7 22 0 0 0 chr6 9536853 9536875 -172878367 + AT_rich Low_complexity Low_complexity 1 22 0 362 109 0 0 chr6 9537965 9538020 -172877222 - MLT2A1 LTR ERVL 0 444 390 382 122 0 24 chr6 9538029 9538111 -172877131 + (TA)n Simple_repeat Simple_repeat 2 81 0 2871 80 5 10 chr6 9538116 9538129 -172877113 - MLT2A1 LTR ERVL -44 400 388 225 0 0 0 chr6 9538129 9538154 -172877088 + (TC)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 9538153 9538174 -172877068 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2871 80 5 10 chr6 9538154 9538562 -172876680 - MLT2A1 LTR ERVL -56 388 1 1157 249 95 49 chr6 9538675 9539003 -172876239 + MER21B LTR ERV1 179 541 -322 2705 120 31 12 chr6 9539003 9539421 -172875821 - MSTA LTR MaLR -2 426 1 1157 249 95 49 chr6 9539421 9539619 -172875623 + MER21B LTR ERV1 541 729 -134 2156 112 0 3 chr6 9539780 9540076 -172875166 - AluSg1 SINE Alu -14 295 1 1677 188 21 40 chr6 9540275 9540647 -172874595 - MLT1A1 LTR MaLR 0 365 1 645 240 31 125 chr6 9542422 9542781 -172872461 + MLT1E2-int LTR MaLR 982 1306 -65 267 54 0 0 chr6 9542819 9542856 -172872386 + (TG)n Simple_repeat Simple_repeat 2 38 0 515 154 8 0 chr6 9542913 9543030 -172872212 + (TAGA)n Simple_repeat Simple_repeat 3 120 0 3553 114 12 4 chr6 9543032 9543539 -172871703 + MER9 LTR ERVK 1 511 0 1019 218 55 42 chr6 9543564 9543871 -172871371 - MLT2C1 LTR ERVL -84 313 3 717 208 7 0 chr6 9543971 9544115 -172871127 + MLT1E2 LTR MaLR 59 203 -421 840 232 0 6 chr6 9544127 9544295 -172870947 + FAM SINE Alu 1 167 -8 1443 228 121 16 chr6 9544610 9544983 -172870259 + MLT1E2 LTR MaLR 215 626 0 420 264 0 0 chr6 9545540 9545650 -172869592 + LTR33 LTR ERVL 410 519 -2 367 315 78 31 chr6 9545656 9545977 -172869265 + L1ME3A LINE L1 2314 2649 -3497 774 296 15 11 chr6 9546166 9546426 -172868816 + LTR40a LTR ERVL 105 365 -154 350 260 0 21 chr6 9546432 9546528 -172868714 + LTR33 LTR ERVL 351 444 -77 741 248 56 25 chr6 9546529 9546727 -172868515 - L2 LINE L2 -530 2784 2581 253 345 9 62 chr6 9547158 9547271 -172867971 + MIR SINE MIR 29 135 -127 1057 254 93 97 chr6 9551030 9551524 -172863718 - MLT1E LTR MaLR -49 544 1 950 248 42 30 chr6 9551581 9551985 -172863257 + L1ME3A LINE L1 2695 3103 -3043 21 57 0 0 chr6 9552000 9552035 -172863207 + AT_rich Low_complexity Low_complexity 1 35 0 733 252 97 63 chr6 9552153 9552463 -172862779 + L1ME3A LINE L1 5535 5862 -308 2521 54 0 0 chr6 9552463 9552757 -172862485 - AluY SINE Alu -17 294 1 733 252 97 63 chr6 9552757 9552827 -172862415 + L1ME3A LINE L1 5862 5928 -242 33 25 0 0 chr6 9552839 9552879 -172862363 + AT_rich Low_complexity Low_complexity 1 40 0 295 298 53 58 chr6 9552922 9553110 -172862132 + L1ME3A LINE L1 5976 6162 -8 1132 294 58 5 chr6 9553282 9553711 -172861531 + L1ME4a LINE L1 5319 5770 -2038 1351 162 28 1 chr6 9553713 9553977 -172861265 + MLT2C2 LTR ERVL 1 274 -140 2096 113 7 3 chr6 9555080 9555398 -172859844 + AluSq SINE Alu 1 319 0 239 412 7 7 chr6 9556054 9556190 -172859052 + L3 LINE CR1 676 811 -766 436 287 64 5 chr6 9556349 9556551 -172858691 + L1ME4a LINE L1 5713 5926 -195 2134 121 0 0 chr6 9556767 9557049 -172858193 - AluSg SINE Alu -26 284 3 728 263 0 0 chr6 9557804 9557964 -172857278 - MER5A DNA MER1_type 0 189 30 225 0 0 0 chr6 9558361 9558386 -172856856 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr6 9558838 9558866 -172856376 + AT_rich Low_complexity Low_complexity 1 28 0 273 97 113 0 chr6 9559948 9560010 -172855232 + L1MA7 LINE L1 6218 6286 -5 22 35 0 0 chr6 9560010 9560039 -172855203 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr6 9561409 9561433 -172853809 + AT_rich Low_complexity Low_complexity 1 24 0 231 309 0 0 chr6 9562171 9562226 -172853016 + polypurine Low_complexity Low_complexity 1 55 0 261 157 14 29 chr6 9562230 9562300 -172852942 + GA-rich Low_complexity Low_complexity 4 72 0 21 0 0 0 chr6 9562589 9562610 -172852632 + AT_rich Low_complexity Low_complexity 1 21 0 3289 258 56 20 chr6 9563136 9564405 -172850837 + L1M4 LINE L1 2723 4036 -2110 1563 225 72 29 chr6 9564439 9564955 -172850287 + L1M4 LINE L1 4409 4946 -1200 1539 219 25 6 chr6 9566270 9566595 -172848647 + ERVL-C1 LTR ERVL 3531 3861 -1903 * 6119 209 39 12 chr6 9566593 9568057 -172847185 + ERVL-C1 LTR ERVL 4221 5755 -9 1287 227 36 48 chr6 9568058 9568471 -172846771 + MLT2C1 LTR ERVL 1 464 0 22 0 0 0 chr6 9569989 9570011 -172845231 + AT_rich Low_complexity Low_complexity 1 22 0 409 304 77 17 chr6 9570844 9571025 -172844217 + MIR SINE MIR 21 212 -50 274 349 18 66 chr6 9571238 9571404 -172843838 + MIR SINE MIR 57 214 -48 18815 110 22 14 chr6 9571837 9574684 -172840558 + L1PA6 LINE L1 10 2879 -3267 5355 49 3 0 chr6 9574694 9575346 -172839896 - L1PA5 LINE L1 -8 6146 5493 * 18810 59 1 0 chr6 9575343 9575619 -172839623 + L1PA6 LINE L1 2863 3137 -3017 2766 16 0 0 chr6 9575619 9575923 -172839319 + AluYa5 SINE Alu 1 304 -7 18810 59 1 0 chr6 9575923 9578955 -172836287 + L1PA6 LINE L1 3137 6148 -6 2116 116 3 0 chr6 9578989 9579295 -172835947 - AluSx SINE Alu 0 307 1 222 276 226 50 chr6 9579446 9579627 -172835615 + MIR SINE MIR 40 252 -10 182 105 26 0 chr6 9579627 9579665 -172835577 + T-rich Low_complexity Low_complexity 2 40 0 236 238 12 25 chr6 9579683 9579763 -172835479 + CT-rich Low_complexity Low_complexity 4 82 0 860 313 148 49 chr6 9579806 9581456 -172833786 - L2 LINE L2 -2 3311 1493 1347 14 0 0 chr6 9581641 9581789 -172833453 + AluY SINE Alu 158 305 -6 1463 199 78 65 chr6 9582788 9583235 -172832007 + LTR40b LTR ERVL 10 462 0 407 323 78 91 chr6 9584281 9584588 -172830654 - L2 LINE L2 -2 3270 2968 767 365 159 14 chr6 9584618 9585530 -172829712 - L2 LINE L2 -417 2897 1854 22 35 0 0 chr6 9585751 9585780 -172829462 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr6 9586416 9586456 -172828786 + AT_rich Low_complexity Low_complexity 1 40 0 332 326 76 15 chr6 9587008 9587146 -172828096 + MIR SINE MIR 7 151 -62 1129 190 18 18 chr6 9587533 9587759 -172827483 - MLT1E1 LTR MaLR -1 653 428 646 224 0 28 chr6 9587812 9587955 -172827287 - MLT1E1 LTR MaLR -514 140 2 253 361 12 36 chr6 9588336 9588502 -172826740 + MIR SINE MIR 50 211 -51 363 174 29 0 chr6 9588556 9588625 -172826617 - MER116 DNA Mariner -2 78 8 21 0 0 0 chr6 9589463 9589484 -172825758 + AT_rich Low_complexity Low_complexity 1 21 0 251 146 146 0 chr6 9590038 9590086 -172825156 - MLT1J LTR MaLR -321 190 136 16796 134 14 13 chr6 9590110 9591254 -172823988 + Tigger2 DNA MER2_type 1 1142 -1576 2126 135 0 0 chr6 9591254 9591558 -172823684 + AluSg SINE Alu 1 304 -6 16796 134 14 13 chr6 9591558 9593089 -172822153 + Tigger2 DNA MER2_type 1142 2680 -38 270 245 43 101 chr6 9593743 9593882 -172821360 - LTR67 LTR ERVL -144 413 283 1761 192 39 0 chr6 9593983 9594317 -172820925 - MER7A DNA MER2_type -1 345 1 466 223 59 94 chr6 9594899 9595101 -172820141 + LTR50 LTR ERVL 139 333 -462 306 244 194 50 chr6 9595096 9595256 -172819986 + LTR50 LTR ERVL 481 663 -132 * 180 176 0 0 chr6 9595307 9595341 -172819901 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 265 263 114 0 chr6 9595411 9595525 -172819717 + LTR50 LTR ERVL 660 786 -9 2345 78 0 0 chr6 9595705 9596008 -172819234 + AluSg SINE Alu 1 303 0 444 296 56 52 chr6 9596126 9596339 -172818903 - MIR SINE MIR -40 222 9 357 250 121 36 chr6 9598428 9598568 -172816674 + MIR SINE MIR 111 262 0 2180 94 0 3 chr6 9598805 9599118 -172816124 + AluY SINE Alu 1 312 0 240 326 156 22 chr6 9599184 9599454 -172815788 + L2 LINE L2 3008 3313 0 195 100 0 0 chr6 9600326 9600356 -172814886 + (TTA)n Simple_repeat Simple_repeat 3 32 0 326 287 21 21 chr6 9600431 9600525 -172814717 - L2 LINE L2 -8 3264 3171 381 170 69 202 chr6 9600721 9600909 -172814333 + MIR SINE MIR 79 241 -21 1458 144 44 31 chr6 9601165 9601484 -172813758 - MER33 DNA MER1_type 0 324 2 185 323 50 72 chr6 9601585 9601904 -172813338 - L2 LINE L2 -580 2734 2423 549 246 113 0 chr6 9602236 9602378 -172812864 + MIR SINE MIR 4 161 -101 29 28 0 0 chr6 9602636 9602672 -172812570 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr6 9603394 9603418 -172811824 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2133 121 0 0 chr6 9603420 9603701 -172811541 - AluSx SINE Alu -31 281 1 188 377 14 0 chr6 9604822 9604891 -172810351 + MIR3 SINE MIR 128 197 -11 36 40 0 0 chr6 9605616 9605666 -172809576 + AT_rich Low_complexity Low_complexity 1 50 0 195 69 0 0 chr6 9608072 9608101 -172807141 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 256 99 0 62 chr6 9608199 9608280 -172806962 + (TA)n Simple_repeat Simple_repeat 2 77 0 240 35 0 0 chr6 9609499 9609528 -172805714 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr6 9609742 9609772 -172805470 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 9613207 9613235 -172802007 + AT_rich Low_complexity Low_complexity 1 28 0 181 361 0 0 chr6 9613521 9613593 -172801649 - MIR SINE MIR -138 124 53 325 143 13 13 chr6 9613970 9614047 -172801195 + A-rich Low_complexity Low_complexity 2 78 0 38 61 0 0 chr6 9614476 9614542 -172800700 + AT_rich Low_complexity Low_complexity 1 66 0 32 43 0 0 chr6 9614593 9614639 -172800603 + AT_rich Low_complexity Low_complexity 1 46 0 304 266 64 0 chr6 9614705 9614799 -172800443 + L1MC4 LINE L1 6593 6692 -1350 7261 177 43 31 chr6 9617781 9618669 -172796573 + L1MA9 LINE L1 3689 4565 -1747 2551 113 11 3 chr6 9618669 9619039 -172796203 - THE1C LTR MaLR -2 373 1 9026 121 60 44 chr6 9619039 9620594 -172794648 - THE1C-int LTR MaLR 0 1580 1 2616 117 0 0 chr6 9620594 9620969 -172794273 - THE1C LTR MaLR 0 375 1 7261 177 43 31 chr6 9620969 9621843 -172793399 + L1MA9 LINE L1 4565 5427 -885 2272 8 0 4 chr6 9621843 9622097 -172793145 - AluYa5 SINE Alu -3 308 56 7261 177 43 31 chr6 9622097 9622945 -172792297 + L1MA9 LINE L1 5427 6312 0 291 308 67 0 chr6 9623284 9623388 -172791854 - MIR SINE MIR -20 242 132 263 309 70 39 chr6 9623773 9624003 -172791239 - L2 LINE L2 -46 3267 3031 1509 193 23 16 chr6 9624747 9625053 -172790189 + AluJb SINE Alu 1 308 -4 22 35 0 0 chr6 9626465 9626494 -172788748 + AT_rich Low_complexity Low_complexity 1 29 0 3140 26 3 0 chr6 9626533 9626911 -172788331 - L1PA4 LINE L1 -8 6147 5769 214 366 0 36 chr6 9627197 9627309 -172787933 + MIR3 SINE MIR 10 117 -91 22 80 0 0 chr6 9627810 9627860 -172787382 + AT_rich Low_complexity Low_complexity 1 50 0 1842 127 15 0 chr6 9628863 9629122 -172786120 + AluSg SINE Alu 3 265 -45 25 0 0 0 chr6 9629122 9629147 -172786095 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr6 9629816 9629844 -172785398 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 212 390 67 0 chr6 9629917 9630022 -172785220 + L2 LINE L2 3142 3253 -19 197 397 48 8 chr6 9630495 9630621 -172784621 + MIR SINE MIR 20 150 -58 330 377 24 6 chr6 9630939 9631106 -172784136 + L3 LINE CR1 1406 1575 -2 1095 178 73 32 chr6 9632055 9632159 -172783083 + AluJo SINE Alu 26 124 -188 201 39 0 0 chr6 9632159 9632185 -172783057 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1095 178 73 32 chr6 9632185 9632327 -172782915 + AluJo SINE Alu 124 282 -30 1411 233 19 29 chr6 9632606 9632984 -172782258 - MLT1A2 LTR MaLR 0 374 1 1284 195 74 0 chr6 9633024 9633280 -172781962 - MLT1A2-int LTR MaLR -6 1729 1455 2099 261 67 3 chr6 9633281 9633845 -172781397 - ERVL-B1 LTR ERVL -5163 601 2 1402 236 117 29 chr6 9633846 9633886 -172781356 - MLT2B1 LTR ERVL 0 520 485 293 62 21 0 chr6 9633886 9633934 -172781308 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 1402 236 117 29 chr6 9633934 9634371 -172780871 - MLT2B1 LTR ERVL -35 485 1 384 192 0 26 chr6 9634483 9634561 -172780681 - MLT2D LTR ERVL -338 76 1 360 374 53 45 chr6 9634962 9635318 -172779924 - L2 LINE L2 0 3272 2914 228 35 0 0 chr6 9635422 9635451 -172779791 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1964 165 13 13 chr6 9635494 9635892 -172779350 - L1M4 LINE L1 -1051 5095 4672 895 288 66 70 chr6 9635899 9636399 -172778843 + LTR33A LTR ERVL 23 520 -3 3084 167 57 25 chr6 9636488 9636910 -172778332 + L1MA2 LINE L1 2860 3267 -3037 2200 106 0 0 chr6 9636910 9637194 -172778048 + AluSc SINE Alu 1 284 -25 3084 167 57 25 chr6 9637194 9639428 -172775814 + L1MA2 LINE L1 3267 6298 -6 3084 117 68 11 chr6 9639428 9639985 -172775257 + L1MA2 LINE L1 5716 6304 0 388 270 217 19 chr6 9641007 9641270 -172773972 + MLT1H1 LTR MaLR 241 555 0 21 0 0 0 chr6 9642466 9642487 -172772755 + AT_rich Low_complexity Low_complexity 1 21 0 1640 167 0 11 chr6 9643212 9643481 -172771761 - AluJo SINE Alu -31 281 16 696 119 0 0 chr6 9644133 9644242 -172771000 + (TA)n Simple_repeat Simple_repeat 1 109 0 256 280 164 9 chr6 9644277 9644424 -172770818 + MIR SINE MIR 38 204 -58 220 273 0 30 chr6 9644631 9644697 -172770545 - MIR3 SINE MIR -32 176 113 2349 179 47 61 chr6 9646481 9646990 -172768252 + MLT2B1 LTR ERVL 17 518 -2 3990 136 96 102 chr6 9647963 9649344 -172765898 - pTR5 LTR ERV1 0 2438 743 283 259 17 78 chr6 9649962 9649988 -172765254 - MIR3 SINE MIR -18 190 164 1886 148 10 7 chr6 9649988 9650279 -172764963 + AluSx SINE Alu 1 292 -20 283 259 17 78 chr6 9650279 9650368 -172764874 - MIR3 SINE MIR -44 164 82 9180 93 12 17 chr6 9652133 9654161 -172761081 - L1PA8 LINE L1 -128 6044 4030 22 0 0 0 chr6 9654383 9654405 -172760837 + AT_rich Low_complexity Low_complexity 1 22 0 622 253 11 11 chr6 9655148 9655326 -172759916 + LTR41 LTR ERVL 1 178 -595 360 236 16 41 chr6 9655897 9656020 -172759222 + LTR41 LTR ERVL 654 773 0 183 322 49 2 chr6 9656109 9656271 -172758971 + MIR SINE MIR 53 255 -7 201 300 17 0 chr6 9656703 9656763 -172758479 - MIR SINE MIR -118 90 30 218 310 52 69 chr6 9657582 9657698 -172757544 + MIR SINE MIR 95 208 -54 323 248 238 0 chr6 9658280 9658381 -172756861 - L2 LINE L2 0 3313 3189 4331 129 15 7 chr6 9659382 9660105 -172755137 + L1MA5A LINE L1 5565 6293 -4 23 0 0 0 chr6 9660164 9660187 -172755055 + AT_rich Low_complexity Low_complexity 1 23 0 300 269 54 23 chr6 9661189 9661357 -172753885 - MLT1J2 LTR MaLR -13 428 266 391 235 272 22 chr6 9661520 9661792 -172753450 - L1MC4a LINE L1 -1961 5847 5508 1238 135 5 0 chr6 9661883 9662068 -172753174 - AluSg/x SINE Alu -5 307 122 318 26 0 0 chr6 9662252 9662291 -172752951 + (CA)n Simple_repeat Simple_repeat 2 40 0 1943 136 45 0 chr6 9662388 9662674 -172752568 - AluSx SINE Alu -10 302 4 21 36 0 0 chr6 9663379 9663407 -172751835 + AT_rich Low_complexity Low_complexity 1 28 0 481 278 129 36 chr6 9664168 9664502 -172750740 + LTR16A1 LTR ERVL 48 412 -45 415 316 62 16 chr6 9664671 9664986 -172750256 + MLT1H1 LTR MaLR 226 553 -2 2244 78 6 37 chr6 9665012 9665352 -172749890 + AluY SINE Alu 1 311 0 273 283 0 10 chr6 9666029 9666128 -172749114 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 0 0 0 chr6 9667707 9667733 -172747509 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr6 9668453 9668489 -172746753 + AT_rich Low_complexity Low_complexity 1 36 0 362 288 58 74 chr6 9668885 9669330 -172745912 + L1ME4a LINE L1 5469 5906 -215 192 344 0 31 chr6 9669795 9669859 -172745383 + L2 LINE L2 3230 3291 -22 32 26 0 0 chr6 9670394 9670433 -172744809 + AT_rich Low_complexity Low_complexity 1 39 0 678 250 43 0 chr6 9670644 9670808 -172744434 + MER5B DNA MER1_type 7 177 -1 212 246 0 31 chr6 9672092 9672157 -172743085 + A-rich Low_complexity Low_complexity 2 64 0 299 274 245 0 chr6 9672165 9672267 -172742975 - MIR SINE MIR -58 204 78 235 202 28 64 chr6 9672780 9672889 -172742353 + (TATAA)n Simple_repeat Simple_repeat 2 106 0 418 301 13 51 chr6 9672899 9673055 -172742187 - MIR3 SINE MIR -13 195 46 204 219 0 0 chr6 9673887 9673928 -172741314 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 26 50 0 0 chr6 9676043 9676083 -172739159 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr6 9676302 9676326 -172738916 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 9678069 9678091 -172737151 + AT_rich Low_complexity Low_complexity 1 22 0 192 184 0 0 chr6 9678292 9678341 -172736901 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 0 0 0 chr6 9681224 9681264 -172733978 + (TG)n Simple_repeat Simple_repeat 2 41 0 237 270 11 0 chr6 9681311 9681400 -172733842 - L1MC4 LINE L1 -1339 6703 6614 336 228 12 18 chr6 9681403 9681570 -172733672 + (TA)n Simple_repeat Simple_repeat 1 166 0 782 172 0 15 chr6 9681570 9681704 -172733538 - FLAM_A SINE Alu -1 132 1 527 309 94 16 chr6 9681735 9681991 -172733251 - MLT1J2 LTR MaLR -108 342 67 307 311 68 89 chr6 9682577 9682992 -172732250 + MLT1H LTR MaLR 1 406 -143 22 80 0 0 chr6 9683442 9683492 -172731750 + AT_rich Low_complexity Low_complexity 1 50 0 1324 221 6 48 chr6 9684053 9684410 -172730832 - L1MB7 LINE L1 -9 6175 5834 1722 258 86 53 chr6 9684412 9684622 -172730620 - L1M4c LINE L1 -3175 3782 3580 207 0 0 0 chr6 9684622 9684645 -172730597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1722 258 86 53 chr6 9684645 9684657 -172730585 - L1M4c LINE L1 -3377 3580 3570 1910 134 30 13 chr6 9684657 9684955 -172730287 - AluSx SINE Alu -9 303 1 7657 27 0 0 chr6 9684956 9686439 -172728803 + L1PA4 LINE L1 4673 6155 0 1722 258 86 53 chr6 9686439 9688608 -172726634 - L1M4c LINE L1 -3386 3571 1207 180 111 0 0 chr6 9688613 9688640 -172726602 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 328 323 50 27 chr6 9689136 9689356 -172725886 - L1M4c LINE L1 -6611 248 24 216 97 0 0 chr6 9690476 9690507 -172724735 + (CAA)n Simple_repeat Simple_repeat 2 32 0 337 359 8 8 chr6 9691248 9691365 -172723877 - MIR3 SINE MIR -7 201 85 21 36 0 0 chr6 9691624 9691652 -172723590 + AT_rich Low_complexity Low_complexity 1 28 0 39 0 0 0 chr6 9692171 9692210 -172723032 + AT_rich Low_complexity Low_complexity 1 39 0 2426 109 17 0 chr6 9692916 9693265 -172721977 - L1PA11 LINE L1 -2 6172 5818 231 157 20 20 chr6 9694063 9694114 -172721128 + CT-rich Low_complexity Low_complexity 3 53 0 2528 45 3 16 chr6 9694761 9695073 -172720169 + AluY SINE Alu 1 308 -3 198 0 0 0 chr6 9695543 9695565 -172719677 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr6 9695567 9695589 -172719653 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 184 302 0 32 chr6 9695729 9695792 -172719450 + L2 LINE L2 3248 3308 -5 256 298 94 47 chr6 9696021 9696192 -172719050 + MIR SINE MIR 80 258 -4 2066 114 0 3 chr6 9696299 9696596 -172718646 + AluSg SINE Alu 1 296 -14 223 416 10 0 chr6 9696598 9696699 -172718543 - MIR SINE MIR -87 121 20 2174 103 0 41 chr6 9696893 9697212 -172718030 - AluSg SINE Alu -4 306 1 203 339 0 0 chr6 9697247 9697303 -172717939 + L2 LINE L2 3201 3256 -16 694 243 68 10 chr6 9697357 9697563 -172717679 + MER20 DNA MER1_type 2 219 0 21 36 0 0 chr6 9697610 9697638 -172717604 + AT_rich Low_complexity Low_complexity 1 28 0 2015 91 0 7 chr6 9697803 9698078 -172717164 - AluY SINE Alu -38 273 1 662 200 213 0 chr6 9698078 9698228 -172717014 - MER5A DNA MER1_type -5 184 3 2107 120 3 19 chr6 9698291 9698600 -172716642 - AluSp SINE Alu -9 304 1 953 109 0 0 chr6 9699469 9699607 -172715635 + AluSg/x SINE Alu 173 310 0 279 0 0 0 chr6 9699944 9699975 -172715267 + (CA)n Simple_repeat Simple_repeat 2 32 0 213 65 0 0 chr6 9700093 9700124 -172715118 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2308 91 3 0 chr6 9704704 9705000 -172710242 - AluSq SINE Alu -16 297 1 210 256 0 77 chr6 9705083 9705129 -172710113 - L2 LINE L2 -5 3308 3269 2163 180 105 38 chr6 9705129 9705652 -172709590 - MER74A LTR ERVL 0 558 1 210 256 0 77 chr6 9705652 9705683 -172709559 - L2 LINE L2 -44 3269 3237 467 244 78 93 chr6 9705717 9705922 -172709320 + MIR SINE MIR 50 251 -11 21 0 0 0 chr6 9706202 9706223 -172709019 + AT_rich Low_complexity Low_complexity 1 21 0 1179 216 47 16 chr6 9706259 9706514 -172708728 + AluJb SINE Alu 1 263 -49 1459 249 46 11 chr6 9707447 9707969 -172707273 - L1M4 LINE L1 -2967 3179 2640 281 312 43 0 chr6 9708019 9708112 -172707130 + HERVL LTR ERVL 5242 5338 -316 185 262 143 24 chr6 9708433 9708517 -172706725 - MIR SINE MIR -51 211 118 468 330 34 0 chr6 9708636 9708815 -172706427 - L2 LINE L2 0 3313 3129 1983 141 144 11 chr6 9710448 9710824 -172704418 + MSTA LTR MaLR 3 428 0 23 33 0 0 chr6 9711248 9711278 -172703964 + AT_rich Low_complexity Low_complexity 1 30 0 1603 161 88 21 chr6 9711545 9711692 -172703550 - L1MA9 LINE L1 0 6312 6176 216 0 0 0 chr6 9711692 9711716 -172703526 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 324 0 0 0 chr6 9711715 9711751 -172703491 + (GA)n Simple_repeat Simple_repeat 1 36 0 1603 161 88 21 chr6 9711716 9711976 -172703266 - L1MA9 LINE L1 -136 6176 5915 22 35 0 0 chr6 9712164 9712193 -172703049 + AT_rich Low_complexity Low_complexity 1 29 0 3948 211 6 0 chr6 9712246 9712952 -172702290 + L1MA4 LINE L1 1 710 -4618 3283 239 31 6 chr6 9712982 9713931 -172701311 + L1MA4 LINE L1 772 1743 -4585 12263 201 24 20 chr6 9713932 9718629 -172696613 + L1MA4 LINE L1 1804 6476 -6 1471 200 7 4 chr6 9719104 9719374 -172695868 + AluJo SINE Alu 12 282 -30 294 206 32 0 chr6 9719417 9719480 -172695762 - MIR SINE MIR -142 120 56 22 56 0 0 chr6 9719551 9719587 -172695655 + AT_rich Low_complexity Low_complexity 1 36 0 2039 119 11 0 chr6 9720852 9721180 -172694062 + AluSc SINE Alu 1 331 0 332 280 59 29 chr6 9722355 9722499 -172692743 - MIR SINE MIR -51 157 47 328 305 40 66 chr6 9722907 9723255 -172691987 - L1MEd LINE L1 -5184 935 597 198 364 23 11 chr6 9723763 9723851 -172691391 + MIR SINE MIR 48 136 -126 44 96 0 0 chr6 9723852 9723987 -172691255 + AT_rich Low_complexity Low_complexity 1 135 0 415 301 38 75 chr6 9724513 9724805 -172690437 - L3b LINE CR1 -194 1389 1109 370 376 39 6 chr6 9725387 9725565 -172689677 + MLT1J LTR MaLR 278 461 -50 1881 115 7 54 chr6 9725957 9726274 -172688968 + AluSg SINE Alu 1 303 0 1735 116 12 4 chr6 9726911 9727169 -172688073 - MER41B LTR ERV1 -375 260 1 480 285 7 7 chr6 9727169 9727306 -172687936 - MIR SINE MIR -114 148 12 306 274 0 0 chr6 9727990 9728074 -172687168 + L1ME LINE L1 42 125 -5994 1127 198 9 4 chr6 9728086 9728313 -172686929 + L1MC1 LINE L1 6106 6333 0 2497 214 83 82 chr6 9728348 9729079 -172686163 - MER21B LTR ERV1 -4 859 125 2207 125 58 3 chr6 9729079 9729424 -172685818 - THE1B LTR MaLR 0 364 1 2497 214 83 82 chr6 9729424 9729538 -172685704 - MER21B LTR ERV1 -738 125 13 469 328 43 48 chr6 9729782 9730133 -172685109 + L1ME LINE L1 403 751 -5368 389 310 69 50 chr6 9730227 9731346 -172683896 + L1ME LINE L1 2824 3963 -2166 2162 119 0 0 chr6 9731350 9731671 -172683571 + AluSx SINE Alu 1 312 0 181 371 0 0 chr6 9731959 9732048 -172683194 + L2 LINE L2 1743 1831 -1483 268 319 125 19 chr6 9732090 9732250 -172682992 + L2 LINE L2 1930 2106 -1208 299 306 104 3 chr6 9732335 9732632 -172682610 + L1ME LINE L1 4265 4591 -1538 282 323 15 8 chr6 9732924 9733054 -172682188 + L1ME LINE L1 5719 5849 -296 22 0 0 0 chr6 9733275 9733297 -172681945 + AT_rich Low_complexity Low_complexity 1 22 0 234 280 67 27 chr6 9734228 9734303 -172680939 + MIR SINE MIR 66 143 -119 194 281 56 56 chr6 9736372 9736461 -172678781 + MIR3 SINE MIR 90 178 -30 21 36 0 0 chr6 9736837 9736865 -172678377 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr6 9737278 9737300 -172677942 + AT_rich Low_complexity Low_complexity 1 22 0 2149 118 0 3 chr6 9737536 9737825 -172677417 - AluSx SINE Alu -24 288 1 186 103 0 0 chr6 9738011 9738040 -172677202 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 308 273 62 57 chr6 9738453 9738629 -172676613 + MLT1J LTR MaLR 243 419 -92 219 221 29 36 chr6 9740458 9740598 -172674644 + CT-rich Low_complexity Low_complexity 3 141 0 467 138 11 0 chr6 9740742 9740829 -172674413 + (TA)n Simple_repeat Simple_repeat 1 88 0 819 133 21 14 chr6 9741660 9741803 -172673439 + L1PB4 LINE L1 6011 6154 -2 191 309 0 0 chr6 9742447 9742502 -172672740 - L3 LINE CR1 -6 1571 1517 208 362 14 0 chr6 9742640 9742709 -172672533 - L3 LINE CR1 -219 1358 1289 270 0 0 0 chr6 9742794 9742824 -172672418 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 360 0 0 0 chr6 9742823 9742863 -172672379 + (CA)n Simple_repeat Simple_repeat 1 40 0 311 353 24 94 chr6 9742916 9743171 -172672071 + L2 LINE L2 3036 3272 0 639 218 17 75 chr6 9743409 9743648 -172671594 - L1ME3A LINE L1 -23 6147 5923 * 2940 245 35 62 chr6 9743629 9744143 -172671099 - L1ME3A LINE L1 -1109 5037 4511 2175 122 0 0 chr6 9744143 9744437 -172670805 - AluSx SINE Alu -18 294 1 2940 245 35 62 chr6 9744437 9744948 -172670294 - L1ME3A LINE L1 -1635 4511 4048 1652 168 21 7 chr6 9744948 9745239 -172670003 + AluJb SINE Alu 5 299 -13 2940 245 35 62 chr6 9745239 9745436 -172669806 - L1ME3A LINE L1 -2098 4048 3847 204 281 47 0 chr6 9745619 9745683 -172669559 - MIR SINE MIR 0 262 196 1997 131 31 3 chr6 9745694 9745985 -172669257 - AluSp SINE Alu -14 299 1 287 340 38 0 chr6 9746067 9746173 -172669069 - MIR SINE MIR -95 167 58 24 0 0 0 chr6 9746608 9746632 -172668610 + AT_rich Low_complexity Low_complexity 1 24 0 212 333 40 0 chr6 9747827 9747902 -172667340 - L2 LINE L2 -2 3270 3193 2052 129 3 16 chr6 9749248 9749551 -172665691 + AluSx SINE Alu 4 302 -10 280 303 189 0 chr6 9750024 9750146 -172665096 - L2 LINE L2 -1 3271 3127 1978 138 37 40 chr6 9750289 9750665 -172664577 - THE1C LTR MaLR 0 375 1 230 232 18 0 chr6 9750837 9750893 -172664349 + MER91 DNA MER1_type 83 139 -1 487 304 70 5 chr6 9751226 9751427 -172663815 - MIR SINE MIR 0 262 49 906 163 32 116 chr6 9751446 9751697 -172663545 + MSTD LTR MaLR 167 396 0 568 189 56 103 chr6 9751781 9752014 -172663228 - L1MC5 LINE L1 -1002 6959 6738 4806 179 18 20 chr6 9752625 9753521 -172661721 + MER54A LTR ERVL 8 901 0 743 323 60 60 chr6 9753521 9754075 -172661167 - HAL1b LINE L1 -748 600 47 2202 121 0 7 chr6 9754539 9754845 -172660397 - AluSx SINE Alu -8 304 1 29 60 0 0 chr6 9755538 9755588 -172659654 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr6 9755628 9755649 -172659593 + AT_rich Low_complexity Low_complexity 1 21 0 362 267 102 45 chr6 9756180 9756356 -172658886 - MER117 DNA MER1_type -1 196 11 186 402 30 12 chr6 9758884 9759048 -172656194 + L2 LINE L2 2896 3062 -210 22 0 0 0 chr6 9760015 9760037 -172655205 + AT_rich Low_complexity Low_complexity 1 22 0 2488 76 0 0 chr6 9761298 9761602 -172653640 - AluSp SINE Alu -9 304 1 189 0 0 0 chr6 9762776 9762797 -172652445 + (A)n Simple_repeat Simple_repeat 1 21 0 886 174 46 78 chr6 9763209 9763427 -172651815 + MER20 DNA MER1_type 6 216 -3 22 35 0 0 chr6 9764643 9764672 -172650570 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 9764797 9764818 -172650424 + AT_rich Low_complexity Low_complexity 1 21 0 297 320 8 0 chr6 9764868 9764993 -172650249 + (TA)n Simple_repeat Simple_repeat 2 127 0 422 189 35 51 chr6 9768056 9768200 -172647042 - L1ME3 LINE L1 -8 6162 6027 2360 223 79 53 chr6 9768584 9768760 -172646482 - L1MD3 LINE L1 0 8042 7872 186 43 0 0 chr6 9768760 9768783 -172646459 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2360 223 79 53 chr6 9768783 9769433 -172645809 - L1MD3 LINE L1 -170 7872 7207 445 234 130 5 chr6 9769423 9769607 -172645635 - L1MC4 LINE L1 -871 7171 6965 * 1005 207 43 110 chr6 9769618 9769716 -172645526 + MLT1A1 LTR MaLR 1 104 -261 1579 126 99 90 chr6 9769716 9770050 -172645192 - MER1B DNA MER1_type 0 337 1 1005 207 43 110 chr6 9770050 9770342 -172644900 + MLT1A1 LTR MaLR 104 365 0 348 209 11 44 chr6 9770342 9770433 -172644809 - L1MC4a LINE L1 -927 6881 6794 440 306 13 39 chr6 9772579 9772809 -172642433 + HERVL LTR ERVL 3777 4000 -1485 819 332 52 50 chr6 9773036 9773511 -172641731 + HERVL LTR ERVL 4244 4717 -1047 2271 73 0 30 chr6 9773511 9773812 -172641430 + AluY SINE Alu 1 292 -19 819 332 52 50 chr6 9773812 9774491 -172640751 + HERVL LTR ERVL 4717 5368 -396 276 224 15 45 chr6 9774657 9774724 -172640518 + MLT1D LTR MaLR 1 65 -440 843 231 55 107 chr6 9774754 9775157 -172640085 + MLT2C2 LTR ERVL 83 464 0 619 206 144 45 chr6 9775179 9775459 -172639783 + MLT1D LTR MaLR 59 347 -43 862 188 0 18 chr6 9775905 9776070 -172639172 + MER5A DNA MER1_type 3 164 -25 255 352 23 55 chr6 9777909 9778037 -172637205 - L2 LINE L2 0 3272 3149 186 394 31 8 chr6 9778046 9778173 -172637069 + L2 LINE L2 3143 3272 0 364 226 21 21 chr6 9778271 9778364 -172636878 - MER103 DNA DNA -19 147 55 869 169 90 6 chr6 9780329 9780506 -172634736 + LTR47A LTR ERVL 261 452 0 243 241 132 71 chr6 9780785 9780897 -172634345 + L1M4 LINE L1 4078 4182 -1964 249 83 0 0 chr6 9780897 9780933 -172634309 + (TTA)n Simple_repeat Simple_repeat 2 37 0 243 241 132 71 chr6 9780933 9781147 -172634095 + L1M4 LINE L1 4182 4441 -1705 2361 109 0 3 chr6 9781339 9781652 -172633590 - AluSx SINE Alu 0 312 1 543 287 62 10 chr6 9783378 9783573 -172631669 - MIR SINE MIR -12 250 46 21 0 0 0 chr6 9784123 9784144 -172631098 + AT_rich Low_complexity Low_complexity 1 21 0 276 120 0 0 chr6 9785712 9785762 -172629480 + (TG)n Simple_repeat Simple_repeat 1 50 0 255 324 50 50 chr6 9787021 9787203 -172628039 + MIR SINE MIR 49 230 -32 2545 121 8 0 chr6 9787337 9787709 -172627533 - THE1C LTR MaLR 0 375 1 318 318 62 36 chr6 9788228 9788420 -172626822 - MIR3 SINE MIR -3 205 9 1041 147 0 0 chr6 9790454 9790661 -172624581 - AluSq SINE Alu 0 340 134 2279 96 3 7 chr6 9790661 9790963 -172624279 - AluSg SINE Alu -9 301 1 1586 160 47 13 chr6 9791435 9791753 -172623489 - L1MB4 LINE L1 0 6180 5852 675 164 16 16 chr6 9791789 9791917 -172623325 - L1P LINE L1 -1072 5074 4947 * 2633 174 42 53 chr6 9791910 9791957 -172623285 - L1MB4 LINE L1 -318 5862 5816 2473 53 3 0 chr6 9791957 9792260 -172622982 - AluY SINE Alu -7 304 1 2633 174 42 53 chr6 9792260 9792925 -172622317 - L1MB4 LINE L1 -364 5816 5173 377 327 0 36 chr6 9793284 9793449 -172621793 + MIR SINE MIR 54 212 -50 183 80 0 0 chr6 9794149 9794174 -172621068 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 294 313 0 0 chr6 9794441 9794524 -172620718 + MIR SINE MIR 120 202 -60 1609 92 1 6 chr6 9794825 9795050 -172620192 - L1PA8 LINE L1 -188 5943 5720 1213 113 20 10 chr6 9795050 9795244 -172619998 + L1PA8 LINE L1 5974 6170 -2 1609 92 1 6 chr6 9795244 9795255 -172619987 - L1PA8A LINE L1 -411 5720 5710 347 250 33 33 chr6 9795351 9795471 -172619771 - MER103 DNA DNA -2 164 45 318 306 104 31 chr6 9795544 9795768 -172619474 + MIR SINE MIR 23 259 -3 229 212 62 115 chr6 9796055 9796168 -172619074 - L2 LINE L2 0 3313 3207 245 317 49 0 chr6 9796510 9796592 -172618650 - L2 LINE L2 -8 3264 3179 2325 138 35 30 chr6 9797255 9797683 -172617559 - Tigger2a DNA MER2_type -3 431 2 343 259 0 0 chr6 9799558 9799643 -172615599 - L1ME3A LINE L1 -4 6166 6082 649 249 86 10 chr6 9799658 9799855 -172615387 + LTR50 LTR ERVL 11 222 -573 351 0 0 0 chr6 9799980 9800019 -172615223 + (A)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr6 9800872 9800892 -172614350 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 2040 87 6 113 chr6 9800923 9801267 -172613975 + AluSc SINE Alu 1 307 -2 21 71 0 0 chr6 9801284 9801326 -172613916 + AT_rich Low_complexity Low_complexity 1 42 0 567 247 35 119 chr6 9801665 9802009 -172613233 + L1MC4a LINE L1 5628 5942 -1866 41616 74 5 5 chr6 9802092 9808592 -172606650 + L1PA5 LINE L1 11 6150 -4 252 128 0 0 chr6 9808581 9808620 -172606622 + L1MC4a LINE L1 6560 6598 -1210 * 549 306 29 29 chr6 9808821 9808991 -172606251 + MIR SINE MIR 36 205 -57 1685 230 66 60 chr6 9809474 9810238 -172605004 + LTR1B LTR ERV1 1 811 -15 326 265 119 63 chr6 9810548 9810816 -172604426 + L1ME4a LINE L1 5621 5903 -218 408 20 0 0 chr6 9813110 9813159 -172602083 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr6 9813375 9813397 -172601845 + AT_rich Low_complexity Low_complexity 1 22 0 270 95 0 0 chr6 9814527 9814569 -172600673 + (TC)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr6 9818363 9818407 -172596835 + AT_rich Low_complexity Low_complexity 1 44 0 2876 6 0 21 chr6 9818504 9818829 -172596413 + AluYb8 SINE Alu 1 318 0 329 267 103 36 chr6 9819132 9819297 -172595945 + MIR SINE MIR 49 224 -38 487 257 18 0 chr6 9819300 9819409 -172595833 + L1MB8 LINE L1 4013 4123 -2023 3906 155 48 23 chr6 9819411 9820102 -172595140 - MER50 LTR ERV1 -24 710 3 3266 225 45 10 chr6 9820103 9821640 -172593602 + L1MB8 LINE L1 4119 5888 -290 264 258 32 8 chr6 9822528 9822652 -172592590 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 316 346 20 0 chr6 9822678 9822779 -172592463 + MER5A DNA MER1_type 87 189 0 264 271 25 42 chr6 9823696 9823814 -172591428 - L2 LINE L2 -8 3305 3190 269 308 60 26 chr6 9825252 9825369 -172589873 - L2 LINE L2 -6 3266 3146 2270 80 0 3 chr6 9828095 9828406 -172586836 + AluSg SINE Alu 1 310 0 240 35 0 0 chr6 9828415 9828444 -172586798 + (TG)n Simple_repeat Simple_repeat 2 30 0 594 104 0 0 chr6 9829149 9829245 -172585997 + (GA)n Simple_repeat Simple_repeat 2 97 0 477 301 151 66 chr6 9829294 9829858 -172585384 - L2 LINE L2 -644 2670 2059 6452 91 10 4 chr6 9831566 9832971 -172582271 + L1PA10 LINE L1 4751 6160 -8 529 159 0 0 chr6 9833075 9833163 -172582079 + AluJ/FLAM SINE Alu 1 88 -224 207 0 0 0 chr6 9833178 9833201 -172582041 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 445 363 41 14 chr6 9833902 9834197 -172581045 - LTR16A LTR ERVL -78 372 70 314 315 112 14 chr6 9834291 9834434 -172580808 - MLT1K LTR MaLR -109 479 323 255 152 0 0 chr6 9835256 9835302 -172579940 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 198 307 173 0 chr6 9835715 9835790 -172579452 + L2 LINE L2 3160 3247 -25 2175 121 3 0 chr6 9835874 9836181 -172579061 - AluSq SINE Alu -5 308 1 341 246 0 0 chr6 9836923 9836988 -172578254 - MER91B DNA MER1_type -125 65 1 2111 169 83 14 chr6 9837538 9837969 -172577273 + LOR1b LTR ERV1 1 461 0 473 264 68 20 chr6 9837981 9838129 -172577113 - MER5B DNA MER1_type 0 178 24 295 233 126 10 chr6 9841151 9841254 -172573988 - MER94 DNA DNA -13 121 7 22 0 0 0 chr6 9842330 9842352 -172572890 + AT_rich Low_complexity Low_complexity 1 22 0 396 346 56 45 chr6 9843268 9843478 -172571764 - L2 LINE L2 0 3272 3057 411 68 0 0 chr6 9843478 9843537 -172571705 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 346 56 45 chr6 9843537 9843592 -172571650 - L2 LINE L2 -215 3057 3004 280 302 0 65 chr6 9843802 9843941 -172571301 + Charlie8 DNA MER1_type 75 204 -2213 365 82 0 16 chr6 9845310 9845371 -172569871 - L1PA6 LINE L1 -1 6153 6094 492 130 0 0 chr6 9846481 9846550 -172568692 - AluJo SINE Alu -37 275 207 * 653 191 0 0 chr6 9846548 9846658 -172568584 - AluJo SINE Alu -192 120 11 237 310 82 32 chr6 9847069 9847350 -172567892 + L1ME LINE L1 5480 5774 -347 2216 128 0 0 chr6 9847609 9847915 -172567327 + AluSx SINE Alu 1 306 -6 743 360 50 38 chr6 9847989 9848863 -172566379 - HERV16 LTR ERVL -3750 1246 362 2394 94 0 0 chr6 9848879 9849188 -172566054 - AluSc SINE Alu 0 309 1 917 250 89 44 chr6 9849488 9849804 -172565438 - LTR16C LTR ERVL -6 485 156 410 94 16 0 chr6 9850543 9850607 -172564635 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 210 325 138 55 chr6 9852707 9852800 -172562442 + L2 LINE L2 2271 2355 -959 2831 3 0 3 chr6 9852800 9853110 -172562132 - AluYa5 SINE Alu -2 309 1 210 325 138 55 chr6 9853110 9853493 -172561749 + L2 LINE L2 2355 2787 -527 235 290 0 16 chr6 9853613 9853675 -172561567 + MER5A DNA MER1_type 129 189 0 459 189 22 11 chr6 9853683 9853773 -172561469 - MER5B DNA MER1_type 0 178 88 346 234 0 65 chr6 9853774 9853898 -172561344 + L1ME1 LINE L1 5083 5198 -948 2665 221 28 64 chr6 9853922 9854736 -172560506 + L1ME1 LINE L1 5377 6161 -5 2103 106 0 14 chr6 9854757 9855049 -172560193 + AluSc SINE Alu 1 288 -21 202 319 77 66 chr6 9855794 9856067 -172559175 + L2 LINE L2 2426 2701 -613 4300 149 90 24 chr6 9856087 9856934 -172558308 - MER4D LTR ERV1 0 903 1 2251 104 3 0 chr6 9857158 9857467 -172557775 + AluSq SINE Alu 4 313 0 450 321 29 43 chr6 9857520 9857729 -172557513 - MIR SINE MIR -46 216 11 1191 297 74 28 chr6 9857734 9858313 -172556929 - MER20B DNA MER1_type -3 780 175 557 103 0 5 chr6 9858390 9858473 -172556769 - Tigger4(Zombi) DNA MER2_type 0 2731 3 380 179 83 0 chr6 9858473 9858557 -172556685 - MER20B DNA MER1_type -680 103 13 2292 48 48 10 chr6 9859261 9859550 -172555692 + AluY SINE Alu 1 300 -11 1245 248 52 22 chr6 9859566 9859969 -172555273 + MER66A LTR ERV1 43 457 -21 223 343 48 18 chr6 9859974 9860140 -172555102 - MIR SINE MIR -84 178 8 257 356 149 16 chr6 9860606 9860800 -172554442 - MIR SINE MIR -21 241 22 202 254 109 0 chr6 9861126 9861181 -172554061 + MIR SINE MIR 191 251 -11 180 77 0 0 chr6 9862397 9862423 -172552819 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4019 87 5 7 chr6 9863026 9863581 -172551661 + MER41A LTR ERV1 1 554 0 2196 108 0 52 chr6 9864030 9864355 -172550887 - AluSp SINE Alu -2 311 4 2064 178 14 0 chr6 9865112 9865472 -172549770 - MLT1A1 LTR MaLR 0 365 1 881 217 22 0 chr6 9865683 9865867 -172549375 - MER5A DNA MER1_type 0 189 2 251 317 41 32 chr6 9866028 9866151 -172549091 + MIR SINE MIR 31 154 -108 191 270 131 66 chr6 9866222 9866359 -172548883 - MIR SINE MIR -13 249 104 24 32 0 0 chr6 9866702 9866733 -172548509 + AT_rich Low_complexity Low_complexity 1 31 0 622 137 35 13 chr6 9867229 9867456 -172547786 + (TA)n Simple_repeat Simple_repeat 1 232 0 259 269 67 42 chr6 9868858 9868977 -172546265 + L2 LINE L2 3180 3301 -12 898 168 69 108 chr6 9869043 9869157 -172546085 - MER33 DNA MER1_type -2263 322 205 1976 113 39 0 chr6 9869157 9869440 -172545802 - AluSx SINE Alu -18 294 1 898 168 69 108 chr6 9869440 9869659 -172545583 - MER33 DNA MER1_type -2380 205 2 470 272 95 6 chr6 9870043 9870201 -172545041 + MIR SINE MIR 91 262 0 2076 36 0 0 chr6 9870810 9871061 -172544181 - L1PA5 LINE L1 -1218 4928 4678 7446 33 0 1 chr6 9871062 9872283 -172542959 + L1PA5 LINE L1 4951 6170 0 2039 139 7 7 chr6 9872937 9873247 -172541995 - AluSx SINE Alu -2 310 1 356 242 6 19 chr6 9873331 9873488 -172541754 + (TA)n Simple_repeat Simple_repeat 2 156 0 1091 135 0 34 chr6 9873726 9873904 -172541338 - AluJb SINE Alu -12 300 129 770 217 19 14 chr6 9873913 9874125 -172541117 - MER33 DNA MER1_type -111 213 1 217 184 82 0 chr6 9875649 9875698 -172539544 + L2 LINE L2 3261 3313 0 42 95 0 0 chr6 9875773 9875899 -172539343 + AT_rich Low_complexity Low_complexity 1 126 0 1693 150 17 81 chr6 9876741 9877148 -172538094 + L1MA8 LINE L1 5911 6291 0 345 197 0 0 chr6 9877786 9877857 -172537385 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2435 145 47 0 chr6 9878652 9879059 -172536183 - MSTB LTR MaLR 0 426 1 233 270 61 68 chr6 9879806 9879954 -172535288 - MIR SINE MIR -21 241 95 221 196 36 0 chr6 9881451 9881507 -172533735 + (TG)n Simple_repeat Simple_repeat 1 58 0 544 249 150 47 chr6 9882417 9882526 -172532716 - MIR SINE MIR -24 238 142 2247 72 0 0 chr6 9882526 9882803 -172532439 + AluY SINE Alu 35 311 0 544 249 150 47 chr6 9882803 9882886 -172532356 - MIR SINE MIR -120 142 26 2363 63 0 31 chr6 9883085 9883402 -172531840 + AluY SINE Alu 1 307 -4 326 315 67 67 chr6 9883473 9883740 -172531502 + HAL1 LINE L1 1303 1569 -938 2552 173 16 10 chr6 9884345 9884849 -172530393 - L1MB1 LINE L1 -1 6167 5661 454 237 101 0 chr6 9885920 9886059 -172529183 + L1MC4 LINE L1 6459 6611 -1431 1828 270 121 7 chr6 9886100 9886689 -172528553 - MLT2F LTR ERVL -7 656 1 1588 252 93 6 chr6 9886702 9887242 -172528000 + L1MC4 LINE L1 7315 7901 -141 430 293 133 6 chr6 9887345 9887526 -172527716 - MIR SINE MIR -10 252 49 462 307 94 53 chr6 9888000 9888489 -172526753 + L1MC/D LINE L1 2110 2618 -3528 249 274 181 34 chr6 9888532 9888769 -172526473 + L1MC/D LINE L1 2678 2949 -3197 916 196 0 0 chr6 9889306 9889474 -172525768 + L1PA15 LINE L1 5998 6165 0 234 0 0 0 chr6 9889577 9889603 -172525639 + (A)n Simple_repeat Simple_repeat 1 26 0 482 181 7 22 chr6 9889729 9889867 -172525375 + (TA)n Simple_repeat Simple_repeat 1 136 0 232 305 21 0 chr6 9889898 9889993 -172525249 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 229 295 100 14 chr6 9890072 9890282 -172524960 + L1MC/D LINE L1 4932 5159 -987 217 213 33 0 chr6 9890292 9890353 -172524889 + (TA)n Simple_repeat Simple_repeat 2 64 0 227 265 39 59 chr6 9890358 9890460 -172524782 + L1MC4 LINE L1 7942 8041 -1 572 269 81 24 chr6 9890464 9890850 -172524392 + L1MC/D LINE L1 5172 5579 -587 1109 267 16 0 chr6 9891730 9891977 -172523265 - MIR SINE MIR 0 262 12 1937 123 17 3 chr6 9892957 9893250 -172521992 - AluSx SINE Alu -15 297 1 298 287 16 93 chr6 9893267 9893396 -172521846 + L2 LINE L2 3139 3257 -15 2112 125 3 3 chr6 9894197 9894510 -172520732 - AluSq SINE Alu 0 313 1 204 158 0 0 chr6 9894651 9894689 -172520553 + (TG)n Simple_repeat Simple_repeat 1 38 0 295 257 37 64 chr6 9894780 9894889 -172520353 + MIR SINE MIR 53 158 -104 230 304 98 69 chr6 9895166 9895370 -172519872 - MIR SINE MIR -50 212 3 265 304 13 13 chr6 9895696 9895775 -172519467 + L2 LINE L2 3227 3305 -8 1889 131 10 24 chr6 9896072 9896369 -172518873 - AluSx SINE Alu -19 293 1 338 330 34 1 chr6 9896992 9897161 -172518081 + MIR3 SINE MIR 3 178 -30 22 0 0 0 chr6 9898472 9898494 -172516748 + AT_rich Low_complexity Low_complexity 1 22 0 778 242 50 46 chr6 9899221 9899473 -172515769 + MIR SINE MIR 13 254 -8 296 197 13 0 chr6 9901569 9901645 -172513597 - L1ME LINE L1 -280 5841 5765 2121 172 52 2 chr6 9901988 9902396 -172512846 - MSTA LTR MaLR 0 428 1 790 322 82 40 chr6 9902810 9903387 -172511855 + L3 LINE CR1 976 1576 -1 1978 158 0 6 chr6 9903627 9903938 -172511304 - AluSg SINE Alu -1 309 1 824 348 109 44 chr6 9904050 9905365 -172509877 - L2 LINE L2 -182 3090 1701 2004 152 7 0 chr6 9906733 9907030 -172508212 - AluSx SINE Alu -11 301 3 29 47 0 0 chr6 9907149 9907192 -172508050 + AT_rich Low_complexity Low_complexity 1 43 0 186 417 0 0 chr6 9907365 9907425 -172507817 + L2 LINE L2 3127 3186 -86 1291 112 119 76 chr6 9907717 9907980 -172507262 + MLT2A1 LTR ERVL 129 408 -36 504 117 0 0 chr6 9907980 9908057 -172507185 + (TG)n Simple_repeat Simple_repeat 2 78 0 1291 112 119 76 chr6 9908057 9908096 -172507146 + MLT2A1 LTR ERVL 408 444 0 2476 78 0 0 chr6 9908110 9908443 -172506799 + HERVL LTR ERVL 3063 3395 -2259 12927 66 1 1 chr6 9908493 9910169 -172505073 + HERVL LTR ERVL 3393 5068 -586 5488 152 60 38 chr6 9910173 9911324 -172503918 - THE1C-int LTR MaLR -404 1176 1 2164 141 11 29 chr6 9911324 9911353 -172503889 - THE1C LTR MaLR 0 375 347 2161 203 71 68 chr6 9911353 9911984 -172503258 - LTR27 LTR ERV1 -2 634 2 2164 141 11 29 chr6 9911984 9912336 -172502906 - THE1C LTR MaLR -28 347 1 234 0 0 0 chr6 9912358 9912384 -172502858 + (CA)n Simple_repeat Simple_repeat 1 26 0 290 289 143 25 chr6 9915136 9915322 -172499920 - MIR SINE MIR -18 244 38 21 71 0 0 chr6 9915492 9915534 -172499708 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 9915660 9915681 -172499561 + AT_rich Low_complexity Low_complexity 1 21 0 2360 109 0 0 chr6 9915727 9916031 -172499211 + AluSq SINE Alu 1 304 -9 1140 244 86 44 chr6 9917177 9917576 -172497666 + Charlie4a DNA MER1_type 13 437 -1524 2070 127 3 3 chr6 9917576 9917868 -172497374 + AluSq SINE Alu 1 292 -21 1140 244 86 44 chr6 9917868 9917943 -172497299 + Charlie4a DNA MER1_type 437 507 -1 503 284 123 20 chr6 9918497 9918701 -172496541 + L2 LINE L2 3089 3313 0 209 224 17 17 chr6 9918705 9918763 -172496479 + GA-rich Low_complexity Low_complexity 4 61 0 181 154 39 77 chr6 9919542 9919594 -172495648 + L2 LINE L2 3263 3312 -1 22 35 0 0 chr6 9919754 9919783 -172495459 + AT_rich Low_complexity Low_complexity 1 29 0 219 306 8 81 chr6 9919955 9920079 -172495163 + MIR SINE MIR 118 232 -30 204 125 0 0 chr6 9920860 9920892 -172494350 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr6 9922682 9922712 -172492530 + (A)n Simple_repeat Simple_repeat 1 30 0 2266 92 3 10 chr6 9923899 9924202 -172491040 - AluSc SINE Alu -8 301 1 1798 201 120 30 chr6 9925354 9925740 -172489502 - MER70A LTR ERVL 0 472 41 1887 134 22 0 chr6 9925740 9926017 -172489225 + AluSx SINE Alu 17 299 -13 1798 201 120 30 chr6 9926017 9926063 -172489179 - MER70A LTR ERVL -431 41 1 1027 169 6 6 chr6 9926678 9926855 -172488387 + AluJo SINE Alu 123 299 -13 254 209 104 0 chr6 9927143 9927277 -172487965 + (CTATA)n Simple_repeat Simple_repeat 3 150 0 568 58 31 79 chr6 9927284 9927766 -172487476 + (TA)n Simple_repeat Simple_repeat 1 458 0 23 0 0 0 chr6 9927801 9927824 -172487418 + AT_rich Low_complexity Low_complexity 1 23 0 241 287 50 69 chr6 9927876 9927977 -172487265 - MER5A DNA MER1_type -3 186 88 387 206 35 106 chr6 9928812 9928890 -172486352 + MER94 DNA DNA 1 66 -68 1867 154 7 3 chr6 9928890 9929182 -172486060 + AluJb SINE Alu 6 298 -14 387 206 35 106 chr6 9929182 9929244 -172485998 + MER94 DNA DNA 66 131 -3 291 253 107 96 chr6 9930458 9930557 -172484685 - HAL1 LINE L1 -96 2411 2315 5771 57 0 3 chr6 9930557 9931279 -172483963 + L1PA6 LINE L1 5430 6149 -5 291 253 107 96 chr6 9931279 9931740 -172483502 - HAL1 LINE L1 -192 2315 1845 361 319 18 24 chr6 9931772 9931938 -172483304 - L1MEd LINE L1 -5000 1119 955 1859 89 4 0 chr6 9931955 9932190 -172483052 + AluSq SINE Alu 1 236 -77 2370 109 0 6 chr6 9933024 9933337 -172481905 - AluSx SINE Alu -1 311 1 293 288 31 75 chr6 9934846 9934887 -172480355 + MIR SINE MIR 33 74 -188 2140 181 65 16 chr6 9934887 9935330 -172479912 - MLT1C LTR MaLR -2 465 1 293 288 31 75 chr6 9935330 9935448 -172479794 + MIR SINE MIR 74 185 -77 1914 127 7 4 chr6 9935698 9935974 -172479268 + AluSc SINE Alu 1 277 -32 1753 167 51 3 chr6 9936618 9936912 -172478330 + AluJb SINE Alu 1 308 -4 213 225 0 0 chr6 9938835 9938875 -172476367 - L3b LINE CR1 -9 1574 1535 298 319 35 0 chr6 9939864 9939977 -172475265 - L2 LINE L2 -15 3298 3182 652 345 131 31 chr6 9940092 9941073 -172474169 - L2 LINE L2 -352 2962 1884 262 333 83 35 chr6 9941097 9941241 -172474001 - MIR3 SINE MIR -15 193 43 348 304 107 39 chr6 9943247 9943527 -172471715 - L1ME4a LINE L1 0 6121 5823 801 210 81 0 chr6 9943548 9943734 -172471508 + MER58A DNA MER1_type 7 207 -17 272 260 39 0 chr6 9943801 9943878 -172471364 + MLT1J2 LTR MaLR 97 176 -274 23 33 0 0 chr6 9944002 9944032 -172471210 + AT_rich Low_complexity Low_complexity 1 30 0 268 250 0 65 chr6 9944126 9944250 -172470992 - L1M4 LINE L1 -3155 2991 2876 751 353 70 31 chr6 9944924 9945519 -172469723 - L2 LINE L2 -223 3090 2468 340 333 91 37 chr6 9945581 9945824 -172469418 + MLT1I LTR MaLR 96 351 -58 21 57 0 0 chr6 9946087 9946122 -172469120 + AT_rich Low_complexity Low_complexity 1 35 0 7548 27 3 0 chr6 9946759 9948177 -172467065 + L1PA4 LINE L1 4729 6150 -5 618 247 136 42 chr6 9948181 9948489 -172466753 - MSTD LTR MaLR -59 337 1 3120 301 78 14 chr6 9948502 9949661 -172465581 - L2 LINE L2 -1120 2194 961 237 272 96 29 chr6 9950039 9950175 -172465067 - L1ME4a LINE L1 -8 6113 5969 249 281 97 0 chr6 9950195 9950309 -172464933 - L1ME4a LINE L1 -199 5922 5798 242 233 76 23 chr6 9950708 9950880 -172464362 + L1M4 LINE L1 5118 5298 -848 2273 81 0 0 chr6 9951141 9951424 -172463818 + AluY SINE Alu 1 283 -28 283 240 10 39 chr6 9951455 9951559 -172463683 + CT-rich Low_complexity Low_complexity 3 103 0 418 282 45 0 chr6 9952102 9952212 -172463030 - MIR SINE MIR -147 115 1 186 167 0 0 chr6 9952213 9952249 -172462993 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 207 344 0 42 chr6 9952893 9952989 -172462253 + L3 LINE CR1 1437 1528 -49 349 213 19 9 chr6 9953001 9953109 -172462133 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 23 54 0 0 chr6 9953519 9953556 -172461686 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 9953828 9953858 -172461384 + AT_rich Low_complexity Low_complexity 1 30 0 485 279 29 7 chr6 9954792 9954932 -172460310 - L2 LINE L2 0 3313 3171 1981 79 61 11 chr6 9955574 9955851 -172459391 - AluSc SINE Alu -18 291 1 321 43 43 0 chr6 9958070 9958116 -172457126 - L1PA7 LINE L1 0 6154 6107 1761 148 10 21 chr6 9958578 9958869 -172456373 - AluJo SINE Alu -8 304 17 1587 167 42 17 chr6 9959761 9960048 -172455194 - AluJb SINE Alu -16 296 3 312 193 73 73 chr6 9960685 9960794 -172454448 + L1M4 LINE L1 8 116 -6426 26 0 0 0 chr6 9962316 9962342 -172452900 + AT_rich Low_complexity Low_complexity 1 26 0 186 191 0 0 chr6 9962547 9962589 -172452653 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr6 9962994 9963022 -172452220 + AT_rich Low_complexity Low_complexity 1 28 0 30 89 0 0 chr6 9963210 9963289 -172451953 + AT_rich Low_complexity Low_complexity 1 79 0 253 271 104 21 chr6 9965257 9965353 -172449889 - MIR3 SINE MIR -96 112 9 370 244 50 50 chr6 9967283 9967443 -172447799 - MIR SINE MIR -50 212 53 294 125 0 0 chr6 9968840 9968888 -172446354 + (CA)n Simple_repeat Simple_repeat 1 48 0 1537 139 0 34 chr6 9971174 9971411 -172443831 - AluJb SINE Alu -21 291 63 2265 110 0 0 chr6 9972110 9972411 -172442831 - AluSq SINE Alu -10 303 3 267 103 0 0 chr6 9972592 9972631 -172442611 + (CA)n Simple_repeat Simple_repeat 2 40 0 454 193 57 0 chr6 9972656 9972744 -172442498 - MIR SINE MIR -92 170 78 2147 109 26 0 chr6 9973796 9974099 -172441143 - AluSq SINE Alu -2 311 1 407 67 0 17 chr6 9974312 9974372 -172440870 + (GAA)n Simple_repeat Simple_repeat 1 59 0 23 54 0 0 chr6 9975763 9975800 -172439442 + AT_rich Low_complexity Low_complexity 1 37 0 2248 86 40 7 chr6 9976476 9976777 -172438465 - AluSq SINE Alu -2 311 1 2498 57 0 0 chr6 9977101 9977400 -172437842 - AluY SINE Alu -12 299 1 2291 123 0 0 chr6 9977445 9977755 -172437487 + AluSx SINE Alu 1 310 -2 2173 98 0 38 chr6 9978264 9978580 -172436662 + AluSx SINE Alu 1 304 -8 318 303 151 18 chr6 9979223 9979441 -172435801 + L2 LINE L2 2973 3219 -94 2143 112 0 0 chr6 9980188 9980464 -172434778 + AluSx SINE Alu 1 276 -36 204 40 0 0 chr6 9980471 9980496 -172434746 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 717 193 0 0 chr6 9980602 9980721 -172434521 + FLAM_C SINE Alu 1 119 -24 198 103 0 0 chr6 9980721 9980750 -172434492 + (T)n Simple_repeat Simple_repeat 1 29 0 207 100 0 0 chr6 9981375 9981405 -172433837 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 529 302 133 51 chr6 9981410 9981741 -172433501 - L2 LINE L2 -18 3295 2938 2717 168 24 20 chr6 9981758 9982263 -172432979 + MER44D DNA MER2_type 5 566 -39 274 301 33 59 chr6 9982265 9982418 -172432824 - L2 LINE L2 -395 2919 2771 1466 181 4 0 chr6 9982422 9982670 -172432572 + MLT1C LTR MaLR 219 467 0 2871 182 46 14 chr6 9983038 9983627 -172431615 - L1MA9 LINE L1 -313 5999 5392 2855 224 31 9 chr6 9983732 9984179 -172431063 - L1MA9 LINE L1 -2952 3194 2723 2756 217 70 20 chr6 9984179 9984865 -172430377 - MER72 LTR ERV1 -2 720 1 2855 224 31 9 chr6 9984865 9985159 -172430083 - L1MA9 LINE L1 -3423 2723 2437 236 313 145 48 chr6 9985165 9985475 -172429767 + L1ME4a LINE L1 557 896 -5929 1287 196 156 19 chr6 9985592 9985965 -172429277 + MSTB LTR MaLR 1 424 -2 5780 163 25 57 chr6 9985969 9986014 -172429228 + MSTB-int LTR MaLR 3 48 -1532 1872 132 50 4 chr6 9986014 9986294 -172428948 + AluSp SINE Alu 2 294 -19 5780 163 25 57 chr6 9986294 9987411 -172427831 + MSTB-int LTR MaLR 48 1128 -452 1005 287 36 47 chr6 9987696 9988502 -172426740 + L1ME4a LINE L1 1082 1918 -4726 25 75 0 0 chr6 9988599 9988652 -172426590 + AT_rich Low_complexity Low_complexity 1 53 0 203 316 63 42 chr6 9988762 9988811 -172426431 + MIR3 SINE MIR 94 140 -68 2018 147 31 6 chr6 9988811 9989166 -172426076 + MER47A DNA MER2_type 1 364 -2 203 316 63 42 chr6 9989166 9989211 -172426031 + MIR3 SINE MIR 140 190 -18 252 226 0 32 chr6 9995733 9995795 -172419447 - MIR SINE MIR 0 262 203 2491 84 3 0 chr6 9996528 9996836 -172418406 - AluY SINE Alu 0 311 3 462 281 77 77 chr6 9996845 9997204 -172418038 + L1ME4a LINE L1 3186 3547 -3097 2029 139 0 7 chr6 9997204 9997507 -172417735 + AluSg SINE Alu 1 301 -9 462 281 77 77 chr6 9997507 9997578 -172417664 + L1ME4a LINE L1 3546 3616 -3028 326 376 39 55 chr6 9998801 9999125 -172416117 + L1ME4a LINE L1 4132 4446 -2198 1902 107 13 60 chr6 9999125 9999459 -172415783 + AluSx SINE Alu 2 321 0 326 376 39 55 chr6 9999459 9999702 -172415540 + L1ME4a LINE L1 4446 4691 -1953 398 252 60 33 chr6 10000506 10000657 -172414585 - L2 LINE L2 -1012 2302 2148 290 232 21 0 chr6 10000835 10000930 -172414312 + (TATG)n Simple_repeat Simple_repeat 4 100 0 587 308 94 42 chr6 10001366 10001847 -172413395 + L1ME4a LINE L1 5853 6358 -261 662 277 71 20 chr6 10002027 10002280 -172412962 + L2 LINE L2 2080 2345 -969 289 193 48 36 chr6 10002317 10002400 -172412842 + L1ME4a LINE L1 6516 6599 -20 502 282 122 65 chr6 10004231 10004632 -172410610 + L2 LINE L2 2080 2503 -811 824 292 79 22 chr6 10004938 10005434 -172409808 - L1MDb LINE L1 -5113 1296 773 2286 199 77 66 chr6 10005746 10006379 -172408863 - MLT1E1 LTR MaLR -14 640 1 758 271 128 8 chr6 10006379 10006645 -172408597 - L1ME1 LINE L1 -266 5900 5603 316 352 11 0 chr6 10006665 10006753 -172408489 + MIR SINE MIR 20 108 -154 225 180 0 0 chr6 10007198 10007248 -172407994 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 21 36 0 0 chr6 10008682 10008710 -172406532 + AT_rich Low_complexity Low_complexity 1 28 0 966 162 0 0 chr6 10008711 10008859 -172406383 - AluSg/x SINE Alu -29 283 136 28 29 0 0 chr6 10008894 10008929 -172406313 + AT_rich Low_complexity Low_complexity 1 35 0 199 352 108 17 chr6 10009047 10009223 -172406019 + MIR SINE MIR 21 212 -50 2243 139 90 55 chr6 10009249 10009718 -172405524 - LTR12 LTR ERV1 -229 485 1 23 0 0 0 chr6 10010122 10010145 -172405097 + AT_rich Low_complexity Low_complexity 1 23 0 9938 194 22 28 chr6 10010683 10012956 -172402286 - L1 LINE L1 -773 5373 3115 536 207 7 15 chr6 10017637 10017772 -172397470 + L1MB7 LINE L1 6039 6172 -12 22 70 0 0 chr6 10018535 10018578 -172396664 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 10019950 10019971 -172395271 + AT_rich Low_complexity Low_complexity 1 21 0 358 296 92 0 chr6 10020694 10020836 -172394406 - L1ME LINE L1 -440 5681 5527 346 283 22 36 chr6 10021218 10021356 -172393886 - HAL1b LINE L1 -860 488 353 443 259 22 7 chr6 10021423 10021562 -172393680 + L1ME4a LINE L1 5772 5912 -209 213 65 0 0 chr6 10022074 10022105 -172393137 + (T)n Simple_repeat Simple_repeat 1 31 0 2239 103 3 0 chr6 10022476 10022768 -172392474 - AluSq SINE Alu -18 295 3 2151 113 26 47 chr6 10023032 10023413 -172391829 + THE1C LTR MaLR 3 375 0 439 260 73 0 chr6 10023702 10023825 -172391417 + MIR SINE MIR 100 231 -31 2162 113 0 0 chr6 10024425 10024718 -172390524 + AluSx SINE Alu 1 293 -19 180 176 0 0 chr6 10025451 10025485 -172389757 + (TA)n Simple_repeat Simple_repeat 2 35 0 5319 86 97 1 chr6 10026593 10027345 -172387897 + LTR12 LTR ERV1 1 824 -2 40 0 0 0 chr6 10031877 10031917 -172383325 + AT_rich Low_complexity Low_complexity 1 40 0 1685 82 13 0 chr6 10031933 10032166 -172383076 + L1MA1 LINE L1 5725 5960 -342 27 29 0 0 chr6 10032511 10032545 -172382697 + AT_rich Low_complexity Low_complexity 1 34 0 191 337 174 0 chr6 10033106 10033204 -172382038 - MIR SINE MIR -122 140 26 2148 129 0 0 chr6 10033216 10033526 -172381716 - AluSg SINE Alu 0 310 1 198 0 0 0 chr6 10034235 10034257 -172380985 + (TTA)n Simple_repeat Simple_repeat 3 24 0 23 0 0 0 chr6 10034403 10034426 -172380816 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr6 10034889 10034921 -172380321 + (TG)n Simple_repeat Simple_repeat 1 32 0 2130 104 0 4 chr6 10034955 10035259 -172379983 + AluSg SINE Alu 1 303 0 1897 192 78 116 chr6 10036686 10037442 -172377800 - LTR8A LTR ERV1 0 727 1 261 182 0 0 chr6 10037462 10037517 -172377725 + CT-rich Low_complexity Low_complexity 2 56 0 203 389 23 0 chr6 10037525 10037656 -172377586 - L2 LINE L2 -879 2435 2302 393 305 170 5 chr6 10037838 10038061 -172377181 - MIR SINE MIR 0 262 3 4409 193 19 15 chr6 10038155 10038927 -172376315 - L1MB2 LINE L1 -39 6132 5347 4926 148 77 39 chr6 10038927 10039959 -172375283 - MER11C LTR ERVK 0 1071 1 4409 193 19 15 chr6 10039959 10040243 -172374999 - L1MB2 LINE L1 -824 5347 5066 209 380 10 0 chr6 10041302 10041402 -172373840 - L2 LINE L2 -5 3308 3208 28665 29 0 0 chr6 10042020 10046239 -172369003 + L1PA3 LINE L1 1937 6155 0 22 35 0 0 chr6 10046880 10046909 -172368333 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr6 10047678 10047722 -172367520 + AT_rich Low_complexity Low_complexity 1 44 0 1935 104 56 21 chr6 10047872 10048160 -172367082 + AluSx SINE Alu 1 298 -14 548 306 81 32 chr6 10048322 10048888 -172366354 + L1ME4a LINE L1 5525 6118 -3 6301 75 9 0 chr6 10051285 10052447 -172362795 - L1PA8A LINE L1 -3 6128 4962 9997 117 7 2 chr6 10052447 10053946 -172361296 + L1PA8A LINE L1 3443 4949 -1197 357 361 78 38 chr6 10054000 10054444 -172360798 + L2 LINE L2 2597 3060 -212 2813 170 24 19 chr6 10054532 10055073 -172360169 - L1MB1 LINE L1 -8 6160 5617 2266 178 4 13 chr6 10055073 10055533 -172359709 + L1MB2 LINE L1 4743 5198 -948 531 298 72 93 chr6 10057437 10057769 -172357473 - L2 LINE L2 -5 3308 2984 315 0 0 0 chr6 10057810 10057845 -172357397 + (TG)n Simple_repeat Simple_repeat 2 36 0 31 0 0 0 chr6 10057975 10058006 -172357236 + AT_rich Low_complexity Low_complexity 1 31 0 531 281 7 7 chr6 10058105 10058240 -172357002 - MIR SINE MIR -58 150 16 759 184 193 14 chr6 10058270 10058493 -172356749 + MSTD LTR MaLR 6 268 -128 2031 148 18 3 chr6 10058497 10058835 -172356407 - LTR3b LTR ERVK 0 500 158 604 186 17 0 chr6 10058853 10058971 -172356271 + MSTD LTR MaLR 274 393 -3 1002 212 5 0 chr6 10059582 10059766 -172355476 - MER5A DNA MER1_type -1 188 4 247 301 272 7 chr6 10059777 10059913 -172355329 - MER5A DNA MER1_type 0 189 18 310 257 54 16 chr6 10061086 10061184 -172354058 + MER5A DNA MER1_type 4 107 -82 1142 120 0 165 chr6 10061201 10061492 -172353750 - L1PB4 LINE L1 -2 6154 5912 207 300 33 0 chr6 10061494 10061554 -172353688 + MER5A DNA MER1_type 128 189 0 875 234 11 0 chr6 10062331 10062515 -172352727 + MER5A DNA MER1_type 1 186 -3 321 299 70 61 chr6 10062751 10062965 -172352277 + MIR SINE MIR 7 222 -40 2494 50 0 13 chr6 10064738 10065036 -172350206 - AluY SINE Alu -17 294 1 224 255 31 0 chr6 10065459 10065557 -172349685 + (TA)n Simple_repeat Simple_repeat 2 102 0 2769 195 22 36 chr6 10066611 10067001 -172348241 + L1MB2 LINE L1 5410 5787 -384 429 20 0 0 chr6 10067001 10067051 -172348191 + (TA)n Simple_repeat Simple_repeat 1 50 0 2769 195 22 36 chr6 10067051 10067356 -172347886 + L1MB2 LINE L1 5787 6095 -76 26 0 0 0 chr6 10067417 10067443 -172347799 + AT_rich Low_complexity Low_complexity 1 26 0 265 206 32 32 chr6 10067975 10068038 -172347204 + MIR SINE MIR 110 172 -90 180 0 0 0 chr6 10069142 10069162 -172346080 + (A)n Simple_repeat Simple_repeat 1 20 0 231 314 89 16 chr6 10070948 10071072 -172344170 - MIR3 SINE MIR -10 198 66 1548 221 37 68 chr6 10071306 10071823 -172343419 + MLT1D LTR MaLR 5 505 0 1676 173 97 13 chr6 10072592 10072985 -172342257 - MLT1C LTR MaLR -4 463 38 522 0 0 0 chr6 10072985 10073043 -172342199 + (TA)n Simple_repeat Simple_repeat 2 59 0 216 0 0 0 chr6 10073043 10073067 -172342175 + (T)n Simple_repeat Simple_repeat 1 24 0 200 320 58 86 chr6 10073201 10073492 -172341750 - L2 LINE L2 -811 2503 2221 355 321 65 10 chr6 10073783 10073981 -172341261 - MIR3 SINE MIR -2 260 45 424 277 34 25 chr6 10074140 10074259 -172340983 + L2 LINE L2 3153 3272 0 307 388 48 0 chr6 10075954 10076149 -172339093 + MIR SINE MIR 26 229 -33 308 369 9 9 chr6 10076956 10077067 -172338175 + MIR SINE MIR 4 114 -148 23 0 0 0 chr6 10077067 10077090 -172338152 + AT_rich Low_complexity Low_complexity 1 23 0 1007 168 7 0 chr6 10077106 10077261 -172337981 - AluSg/x SINE Alu -21 289 134 1089 196 5 5 chr6 10077368 10077567 -172337675 + AluJo SINE Alu 108 306 -6 261 267 0 0 chr6 10077576 10077636 -172337606 + MIR SINE MIR 195 254 -8 23 0 0 0 chr6 10078350 10078373 -172336869 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr6 10078431 10078460 -172336782 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr6 10078779 10078811 -172336431 + AT_rich Low_complexity Low_complexity 1 32 0 518 370 103 3 chr6 10078960 10079290 -172335952 - LTR16A LTR ERVL -31 419 57 425 300 125 17 chr6 10079994 10080291 -172334951 - ERVL LTR ERVL -922 4842 4514 5372 67 135 0 chr6 10080372 10081100 -172334142 + LTR12 LTR ERV1 1 826 0 13324 108 16 10 chr6 10081100 10084134 -172331108 + HERV9 LTR ERV1 1 2972 -5427 1324 107 10 0 chr6 10084133 10084330 -172330912 + HERV9 LTR ERV1 4756 4954 -3445 * 2093 173 85 97 chr6 10084326 10085235 -172330007 + Harlequin LTR ERV1 843 1740 -5156 * 5370 88 14 0 chr6 10085233 10085996 -172329246 + Harlequin LTR ERV1 7626 8399 0 4541 74 117 118 chr6 10085996 10086823 -172328419 + LTR12 LTR ERV1 1 826 0 789 322 73 41 chr6 10086832 10087688 -172327554 - ERVL LTR ERVL -1267 4387 3226 430 110 20 80 chr6 10087732 10087832 -172327410 + L1MA10 LINE L1 6228 6321 -13 273 269 205 29 chr6 10087834 10088005 -172327237 - L2 LINE L2 -163 3150 2950 2311 111 0 16 chr6 10088092 10088408 -172326834 + AluSx SINE Alu 2 312 0 306 0 0 0 chr6 10088409 10088443 -172326799 + (CA)n Simple_repeat Simple_repeat 2 35 0 1145 232 71 25 chr6 10088523 10088876 -172326366 + MLT1A2 LTR MaLR 6 374 0 24 32 0 0 chr6 10088948 10088979 -172326263 + AT_rich Low_complexity Low_complexity 1 31 0 252 256 116 0 chr6 10089104 10089190 -172326052 + MLT1L LTR MaLR 173 268 -347 246 116 0 0 chr6 10089904 10089947 -172325295 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr6 10093761 10093781 -172321461 + (TTCTC)n Simple_repeat Simple_repeat 4 23 0 322 162 0 73 chr6 10094498 10094566 -172320676 + MLT2E LTR ERVL 20 82 -546 2463 58 0 10 chr6 10094665 10094960 -172320282 + AluY SINE Alu 1 292 -19 236 231 44 33 chr6 10095906 10095997 -172319245 + MLT1H LTR MaLR 408 499 -50 644 223 129 62 chr6 10098678 10098902 -172316340 + MLT2B2 LTR ERVL 198 436 -79 3057 124 47 0 chr6 10098932 10099446 -172315796 - L1PA15 LINE L1 -187 5978 5441 12952 207 8 5 chr6 10099575 10102540 -172312702 - L1PA15 LINE L1 -890 5256 2283 239 347 0 0 chr6 10104323 10104395 -172310847 + L2 LINE L2 3235 3306 -7 541 305 133 0 chr6 10105715 10105941 -172309301 - MIR SINE MIR 0 262 7 291 322 51 25 chr6 10106861 10106979 -172308263 - L2 LINE L2 -9 3263 3143 259 338 15 44 chr6 10106987 10107123 -172308119 + MIR SINE MIR 6 137 -71 276 30 0 0 chr6 10107124 10107157 -172308085 + (TAA)n Simple_repeat Simple_repeat 1 33 0 325 26 0 0 chr6 10107321 10107359 -172307883 + L1PA10 LINE L1 6119 6156 -12 587 312 67 13 chr6 10107567 10107992 -172307250 + L1ME LINE L1 5256 5660 -504 2174 121 0 3 chr6 10108145 10108451 -172306791 - AluSq SINE Alu -8 305 1 248 301 151 0 chr6 10108627 10108700 -172306542 + L2 LINE L2 3226 3309 -4 506 190 10 10 chr6 10110329 10110429 -172304813 + AluY SINE Alu 1 100 -210 2213 117 0 7 chr6 10110751 10111050 -172304192 + AluSx SINE Alu 1 297 -15 2290 87 0 0 chr6 10112081 10112370 -172302872 - AluSg SINE Alu -21 289 1 429 280 108 77 chr6 10112678 10113057 -172302185 - MLT1I LTR MaLR -1 408 18 207 243 0 29 chr6 10113336 10113406 -172301836 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 249 365 66 0 chr6 10113459 10113596 -172301646 + L3 LINE CR1 1343 1488 -89 264 250 54 11 chr6 10114796 10114888 -172300354 - MLT1L LTR MaLR 0 615 520 278 273 125 76 chr6 10114945 10115175 -172300067 - MLT1L LTR MaLR -198 417 111 1673 212 70 79 chr6 10115983 10116640 -172298602 + MLT1E1 LTR MaLR 4 654 0 1873 160 0 3 chr6 10116841 10117129 -172298113 + AluJo SINE Alu 1 287 -25 558 296 73 49 chr6 10117150 10117397 -172297845 - MIR SINE MIR 0 262 10 293 234 122 37 chr6 10117732 10117839 -172297403 + MIR SINE MIR 76 191 -71 460 342 6 6 chr6 10118947 10119105 -172296137 + MIR3 SINE MIR 50 207 -1 459 0 0 0 chr6 10119537 10119588 -172295654 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 336 335 30 37 chr6 10119795 10119959 -172295283 - MLT1K LTR MaLR -240 348 186 560 276 128 64 chr6 10121199 10121604 -172293638 - L2 LINE L2 0 3313 2883 369 329 72 46 chr6 10121698 10121935 -172293307 - MIR SINE MIR 0 262 20 466 204 134 14 chr6 10122017 10122159 -172293083 + MLT1G1 LTR MaLR 1 159 -436 353 227 30 21 chr6 10122154 10122266 -172292976 + MLT1G3 LTR MaLR 432 522 -8 * 3073 169 29 2 chr6 10122340 10122925 -172292317 + L1MA8 LINE L1 5691 6291 0 979 229 9 5 chr6 10123000 10123223 -172292019 - MER58A DNA MER1_type 0 224 1 2350 124 11 21 chr6 10123571 10123950 -172291292 - THE1C LTR MaLR 0 375 1 4174 130 49 49 chr6 10124667 10125420 -172289822 - LTR1 LTR ERV1 -1 784 32 21 57 0 0 chr6 10125890 10125925 -172289317 + AT_rich Low_complexity Low_complexity 1 35 0 227 200 36 18 chr6 10126412 10126467 -172288775 - MLT1K LTR MaLR 0 588 533 1871 171 83 3 chr6 10126957 10127319 -172287923 + MSTB LTR MaLR 36 426 0 262 169 79 0 chr6 10129240 10129329 -172285913 + (TA)n Simple_repeat Simple_repeat 2 97 0 2156 71 46 0 chr6 10130622 10130903 -172284339 - AluY SINE Alu -17 294 1 561 302 16 81 chr6 10131705 10131963 -172283279 + MIR SINE MIR 10 250 -12 783 150 42 163 chr6 10133495 10133735 -172281507 - MER20 DNA MER1_type 0 219 9 2016 120 17 13 chr6 10134176 10134476 -172280766 - AluSx SINE Alu -11 301 1 47 101 0 13 chr6 10134902 10135129 -172280113 + AT_rich Low_complexity Low_complexity 1 224 0 29 84 0 0 chr6 10135164 10135235 -172280007 + AT_rich Low_complexity Low_complexity 1 71 0 316 322 125 13 chr6 10135324 10135359 -172279883 - MIR SINE MIR -46 216 186 396 0 0 0 chr6 10135359 10135403 -172279839 + (CA)n Simple_repeat Simple_repeat 1 44 0 316 322 125 13 chr6 10135403 10135519 -172279723 - MIR SINE MIR -76 186 48 264 247 152 11 chr6 10135826 10136004 -172279238 - L1ME4a LINE L1 -177 5944 5742 234 191 16 32 chr6 10136140 10136203 -172279039 - L1M3 LINE L1 -627 5553 5492 333 0 0 0 chr6 10137200 10137237 -172278005 + (CA)n Simple_repeat Simple_repeat 2 38 0 36 23 0 0 chr6 10137324 10137367 -172277875 + AT_rich Low_complexity Low_complexity 1 43 0 1618 245 71 9 chr6 10137856 10138008 -172277234 - L1ME2 LINE L1 -10 6223 6082 288 0 0 0 chr6 10138008 10138040 -172277202 + (CA)n Simple_repeat Simple_repeat 2 33 0 1618 245 71 9 chr6 10138040 10138395 -172276847 - L1ME2 LINE L1 -151 6082 5681 2290 269 70 55 chr6 10138416 10140289 -172274953 - L1ME2 LINE L1 -3651 2564 656 240 331 67 11 chr6 10140901 10141079 -172274163 - L1ME2 LINE L1 -6202 194 7 21 0 0 0 chr6 10143628 10143649 -172271593 + AT_rich Low_complexity Low_complexity 1 21 0 2023 69 0 4 chr6 10143735 10143980 -172271262 - AluY SINE Alu -67 244 1 299 173 16 81 chr6 10144568 10144753 -172270489 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 196 311 136 0 chr6 10144824 10144927 -172270315 - MIR SINE MIR -111 151 35 1433 135 145 3 chr6 10145312 10145594 -172269648 + L1MB3 LINE L1 5856 6177 -6 1101 279 109 22 chr6 10145709 10146151 -172269091 + L1MDb LINE L1 158 779 -5764 1494 71 0 15 chr6 10146151 10146349 -172268893 - L1PA7 LINE L1 0 6154 5960 1101 279 109 22 chr6 10146349 10146509 -172268733 + L1MDb LINE L1 779 924 -5619 * 1713 241 100 13 chr6 10146486 10147116 -172268126 + L1MDb LINE L1 1812 2496 -4044 7494 231 52 68 chr6 10147132 10147859 -172267383 + L1MDb LINE L1 2651 3388 -3152 1002 66 0 0 chr6 10147859 10147980 -172267262 - AluSc SINE Alu -4 305 185 7494 231 52 68 chr6 10147980 10150174 -172265068 + L1MDb LINE L1 3388 5643 -897 509 125 0 0 chr6 10150699 10150779 -172264463 - MADE1 DNA Mariner 0 80 1 352 156 13 13 chr6 10152195 10152272 -172262970 + GA-rich Low_complexity Low_complexity 1 77 0 1023 119 11 6 chr6 10152274 10152451 -172262791 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2304 83 3 0 chr6 10153543 10153831 -172261411 + AluSc SINE Alu 5 293 -16 403 178 20 10 chr6 10153932 10154033 -172261209 + GA-rich Low_complexity Low_complexity 2 103 0 2588 214 67 62 chr6 10154997 10156308 -172258934 + L1ME1 LINE L1 4825 6148 -18 200 259 36 107 chr6 10156393 10156505 -172258737 - L2 LINE L2 0 3313 3210 306 284 269 0 chr6 10156637 10156771 -172258471 + MER5A DNA MER1_type 11 180 -9 258 359 157 31 chr6 10156801 10157503 -172257739 + L2 LINE L2 1979 2768 -546 1903 168 21 0 chr6 10157801 10158128 -172257114 - MER44D DNA MER2_type -5 604 1 1656 150 12 0 chr6 10160404 10160657 -172254585 - AluJb SINE Alu -23 289 34 22 0 0 0 chr6 10160789 10160811 -172254431 + AT_rich Low_complexity Low_complexity 1 22 0 2344 90 3 0 chr6 10160850 10161150 -172254092 + AluSp SINE Alu 1 301 -12 2435 59 3 13 chr6 10161909 10162216 -172253026 + AluY SINE Alu 5 308 -3 279 325 86 75 chr6 10162296 10162342 -172252900 + L2 LINE L2 2257 2301 -1013 2161 123 0 7 chr6 10162342 10162650 -172252592 - AluSx SINE Alu -6 306 1 279 325 86 75 chr6 10162650 10163046 -172252196 + L2 LINE L2 2301 2704 -610 261 267 10 30 chr6 10163138 10163239 -172252003 + HAL1 LINE L1 1553 1651 -856 21 36 0 0 chr6 10163636 10163664 -172251578 + AT_rich Low_complexity Low_complexity 1 28 0 1313 166 4 7 chr6 10163791 10164062 -172251180 - L1MA4 LINE L1 -5 6295 6026 306 276 104 27 chr6 10164167 10164388 -172250854 + L1ME3A LINE L1 2290 2527 -3619 344 291 54 49 chr6 10164433 10164636 -172250606 + L1ME3A LINE L1 3112 3315 -2831 21 0 0 0 chr6 10164839 10164860 -172250382 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 10164983 10165006 -172250236 + (CAA)n Simple_repeat Simple_repeat 2 24 0 606 302 74 46 chr6 10165012 10165684 -172249558 + L1ME3A LINE L1 5274 5964 -206 25 51 0 0 chr6 10165908 10165947 -172249295 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr6 10166261 10166283 -172248959 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 10167076 10167100 -172248142 + AT_rich Low_complexity Low_complexity 1 24 0 42587 35 23 1 chr6 10167803 10173830 -172241412 + L1PA3 LINE L1 1 6155 0 2358 87 0 10 chr6 10174494 10174794 -172240448 - AluSq SINE Alu -16 297 1 485 276 8 16 chr6 10174982 10175109 -172240133 + MER5B DNA MER1_type 37 162 -16 197 176 0 20 chr6 10175363 10175414 -172239828 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1816 106 4 8 chr6 10175606 10175852 -172239390 - AluSx SINE Alu -13 299 55 751 125 8 0 chr6 10178811 10178931 -172236311 + L1PA14 LINE L1 6041 6161 0 230 293 0 13 chr6 10179859 10179934 -172235308 + L1MCc LINE L1 1130 1203 -5220 1014 293 51 15 chr6 10179960 10180642 -172234600 + L1MCc LINE L1 1263 2183 -4939 342 61 0 0 chr6 10181087 10181136 -172234106 + (CA)n Simple_repeat Simple_repeat 2 50 0 318 26 0 0 chr6 10181135 10181174 -172234068 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 207 258 65 32 chr6 10181368 10181430 -172233812 + MIR3 SINE MIR 135 198 -10 363 273 150 37 chr6 10181896 10182083 -172233159 - MIR SINE MIR -29 233 26 406 288 27 49 chr6 10182574 10182758 -172232484 - MER5A DNA MER1_type -7 182 3 266 297 65 43 chr6 10183519 10183657 -172231585 - MIR SINE MIR -50 212 72 452 332 108 66 chr6 10183704 10184291 -172230951 - L2 LINE L2 -1 3312 2709 340 274 132 0 chr6 10184938 10185044 -172230198 - L2 LINE L2 -5 3308 3189 284 255 124 28 chr6 10185371 10185516 -172229726 + MIR SINE MIR 92 250 -12 639 267 53 36 chr6 10185801 10186026 -172229216 - MIR SINE MIR -26 236 8 1378 191 4 0 chr6 10187394 10187650 -172227592 - MLT1B LTR MaLR 0 390 134 254 360 82 7 chr6 10187990 10188137 -172227105 - MIR SINE MIR -97 165 8 1502 211 72 55 chr6 10189801 10190260 -172224982 + MLT1C LTR MaLR 1 467 0 383 265 70 52 chr6 10190273 10190782 -172224460 - L1MEd LINE L1 -867 1623 920 678 151 0 0 chr6 10191023 10191142 -172224100 + L1MA4 LINE L1 6177 6295 -5 297 212 61 71 chr6 10191711 10191810 -172223432 - MIR SINE MIR -66 196 99 4287 73 10 7 chr6 10193023 10193599 -172221643 - L1PA11 LINE L1 -6 6168 5591 3646 152 20 9 chr6 10194318 10194977 -172220265 + L1PA15 LINE L1 5495 6160 -5 189 356 85 8 chr6 10195098 10195216 -172220026 - MIR SINE MIR -19 243 117 1508 215 33 44 chr6 10195424 10195875 -172219367 + MER39 LTR ERV1 258 703 -4 234 0 0 0 chr6 10197121 10197147 -172218095 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 558 0 0 0 chr6 10199370 10199432 -172215810 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 24 32 0 0 chr6 10201098 10201129 -172214113 + AT_rich Low_complexity Low_complexity 1 31 0 397 275 94 45 chr6 10201146 10201550 -172213692 - L1ME4a LINE L1 -76 6045 5622 883 211 38 24 chr6 10201770 10201979 -172213263 - MER20 DNA MER1_type -7 212 1 424 333 97 13 chr6 10201985 10202213 -172213029 - MIR SINE MIR 0 262 16 296 244 56 11 chr6 10203059 10203149 -172212093 + MER94 DNA DNA 10 103 -31 446 284 28 7 chr6 10203291 10203432 -172211810 - MLT1B LTR MaLR -371 171 28 382 341 0 0 chr6 10203646 10203775 -172211467 - MLT1F1-int LTR MaLR -487 884 756 796 295 75 17 chr6 10204070 10204525 -172210717 - MLT1F1-int LTR MaLR -770 601 1 1207 274 57 9 chr6 10204525 10204875 -172210367 - MLT1F1 LTR MaLR 0 567 201 344 288 61 49 chr6 10204926 10205089 -172210153 - L2 LINE L2 -899 2415 2251 390 339 48 12 chr6 10205187 10205352 -172209890 - MIR SINE MIR -56 206 36 539 286 8 0 chr6 10206448 10206581 -172208661 - MIR SINE MIR -5 257 124 717 312 67 35 chr6 10207741 10208202 -172207040 + L1M2 LINE L1 19 494 -6355 324 368 144 53 chr6 10208239 10208538 -172206704 + L1M2 LINE L1 630 955 -5894 270 331 29 20 chr6 10208990 10209235 -172206007 + L1PA15-16 LINE L1 1317 1563 -5286 391 217 0 0 chr6 10209235 10209318 -172205924 + L1PA15-16 LINE L1 1472 1554 -5295 * 4867 252 31 11 chr6 10209313 10211338 -172203904 + L1PA15-16 LINE L1 1336 3533 -3316 809 123 0 0 chr6 10211361 10211483 -172203759 + L1MA3 LINE L1 6184 6305 0 2128 221 23 8 chr6 10211530 10212047 -172203195 + L1PA15-16 LINE L1 2285 2809 -4040 258 363 71 0 chr6 10212824 10212937 -172202305 - MIR SINE MIR -98 164 44 1085 103 12 0 chr6 10213321 10213486 -172201756 - Tigger1 DNA MER2_type -494 1924 1758 2244 90 7 3 chr6 10213498 10213797 -172201445 - AluSq SINE Alu -13 300 1 1672 136 21 0 chr6 10213799 10214079 -172201163 + Tigger1 DNA MER2_type 1951 2236 -182 268 293 106 16 chr6 10214734 10214857 -172200385 - L2 LINE L2 -20 3293 3160 2035 153 0 7 chr6 10214993 10215293 -172199949 + AluSx SINE Alu 1 298 -14 209 266 125 0 chr6 10215460 10215524 -172199718 - L2 LINE L2 -2 3311 3240 * 308 298 175 72 chr6 10215501 10216550 -172198692 - L2 LINE L2 -544 2770 1613 438 341 62 6 chr6 10216552 10216877 -172198365 + L1MCc LINE L1 19 361 -6062 753 140 6 19 chr6 10216894 10217051 -172198191 + GA-rich Low_complexity Low_complexity 1 155 0 2200 106 33 0 chr6 10217061 10217363 -172197879 + AluSq SINE Alu 1 312 -1 291 157 0 0 chr6 10217373 10217424 -172197818 + GA-rich Low_complexity Low_complexity 2 52 0 773 301 71 38 chr6 10217428 10218170 -172197072 + L1MCc LINE L1 360 1525 -4898 858 259 58 24 chr6 10218193 10218606 -172196636 + L1MCc LINE L1 3489 3915 -3026 834 244 16 29 chr6 10218610 10218842 -172196400 + LTR52 LTR ERVL 1 231 -190 2245 134 116 10 chr6 10218842 10219229 -172196013 - MSTA LTR MaLR 0 428 1 6200 177 135 10 chr6 10219240 10220632 -172194610 - MSTA-int LTR MaLR -12 1568 3 2030 136 169 5 chr6 10220634 10221002 -172194240 - MSTA LTR MaLR 0 428 1 734 184 32 21 chr6 10221004 10221194 -172194048 + LTR52 LTR ERVL 230 421 0 304 195 143 0 chr6 10221194 10221271 -172193971 + L1MCc LINE L1 3921 4008 -2933 2158 133 10 0 chr6 10221309 10221617 -172193625 + AluSx SINE Alu 1 311 -1 394 309 55 24 chr6 10222257 10222422 -172192820 - MIR3 SINE MIR -6 202 33 2098 141 25 19 chr6 10223215 10223576 -172191666 + THE1B LTR MaLR 2 364 0 297 279 52 29 chr6 10223664 10223800 -172191442 + MIR SINE MIR 111 249 -13 244 298 305 8 chr6 10224040 10224171 -172191071 + MER5B DNA MER1_type 1 170 -8 430 299 64 13 chr6 10224275 10224509 -172190733 - L1MC5 LINE L1 -57 7904 7659 6282 88 0 3 chr6 10224528 10224648 -172190594 - L1PA8 LINE L1 0 6172 6053 229 26 53 0 chr6 10224648 10224686 -172190556 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2025 99 4 0 chr6 10224686 10224949 -172190293 - AluSc SINE Alu -29 280 17 6282 88 0 3 chr6 10224949 10225949 -172189293 - L1PA8 LINE L1 -117 6055 5064 1166 102 0 0 chr6 10225949 10226125 -172189117 + L1PA8 LINE L1 4856 5031 -1115 2395 154 17 32 chr6 10226132 10226607 -172188635 - L1MC1 LINE L1 0 6333 5866 2331 186 71 18 chr6 10226631 10227615 -172187627 - L1MC1 LINE L1 -559 5785 4750 413 239 0 0 chr6 10228110 10228198 -172187044 + MIR SINE MIR 175 262 0 11967 46 18 2 chr6 10228230 10230470 -172184772 + L1PA5 LINE L1 3894 6153 -1 232 331 8 41 chr6 10230473 10230594 -172184648 - MER5A DNA MER1_type -35 154 38 387 60 0 0 chr6 10230849 10230899 -172184343 + (TG)n Simple_repeat Simple_repeat 1 50 0 29 28 0 0 chr6 10231009 10231045 -172184197 + AT_rich Low_complexity Low_complexity 1 36 0 240 86 0 0 chr6 10231315 10231350 -172183892 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 49 0 0 chr6 10231551 10231592 -172183650 + AT_rich Low_complexity Low_complexity 1 41 0 203 326 74 82 chr6 10231695 10231830 -172183412 + MIR SINE MIR 59 192 -70 201 94 0 0 chr6 10232317 10232349 -172182893 + (CA)n Simple_repeat Simple_repeat 2 33 0 1161 181 178 22 chr6 10233015 10233340 -172181902 + MLT1A2 LTR MaLR 1 467 0 717 284 87 79 chr6 10233752 10234021 -172181221 + L1MA7 LINE L1 2 267 -5083 5324 73 1 3 chr6 10234021 10234716 -172180526 - L1PA6 LINE L1 -11 6143 5450 717 284 87 79 chr6 10234716 10235044 -172180198 + L1MA7 LINE L1 267 627 -4723 1015 333 33 3 chr6 10235412 10235803 -172179439 + L1MA7 LINE L1 853 1255 -5026 2761 174 60 44 chr6 10235815 10236498 -172178744 + LTR8A LTR ERV1 34 727 0 1271 220 80 32 chr6 10236499 10237067 -172178175 + L1MA7 LINE L1 1250 1833 -4516 8579 196 21 8 chr6 10237080 10239110 -172176132 + L1MA7 LINE L1 2764 4819 -1531 1103 155 0 0 chr6 10239110 10239271 -172175971 + AluJb SINE Alu 138 298 -14 328 151 174 0 chr6 10239272 10239358 -172175884 + L1MA7 LINE L1 4811 4911 -1439 40102 57 6 1 chr6 10239376 10245501 -172169741 + L1PA5 LINE L1 11 6153 -1 2794 172 7 18 chr6 10245490 10246059 -172169183 + L1MA7 LINE L1 4901 5463 -887 * 3597 179 33 9 chr6 10246059 10246792 -172168450 + L1MA7 LINE L1 5744 6493 -2 21 0 0 0 chr6 10246792 10246813 -172168429 + AT_rich Low_complexity Low_complexity 1 21 0 2579 162 33 44 chr6 10246931 10247408 -172167834 + MLT2B2 LTR ERVL 1 473 -42 360 0 0 0 chr6 10247408 10247448 -172167794 + (TG)n Simple_repeat Simple_repeat 1 40 0 2579 162 33 44 chr6 10247448 10247489 -172167753 + MLT2B2 LTR ERVL 473 513 -2 690 256 115 0 chr6 10247702 10247893 -172167349 + MIR SINE MIR 49 261 -1 306 282 118 45 chr6 10248100 10248210 -172167032 - L2 LINE L2 0 3272 3155 3300 150 25 30 chr6 10248918 10249525 -172165717 + MER6A DNA MER2_type 1 604 -1 2166 104 13 26 chr6 10250400 10250708 -172164534 + AluSx SINE Alu 5 308 -4 21 36 0 0 chr6 10250731 10250759 -172164483 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr6 10251759 10251812 -172163430 + AT_rich Low_complexity Low_complexity 1 53 0 1762 156 46 38 chr6 10252150 10252522 -172162720 - THE1C LTR MaLR 0 375 1 207 272 0 0 chr6 10252996 10253121 -172162121 + (CA)n Simple_repeat Simple_repeat 2 126 0 522 236 64 17 chr6 10254003 10254196 -172161046 - MIR SINE MIR -60 202 2 2046 116 0 0 chr6 10254637 10254962 -172160280 + AluSg SINE Alu 6 330 0 2194 95 0 3 chr6 10255109 10255426 -172159816 - AluY SINE Alu 0 316 1 2006 138 7 0 chr6 10255429 10255718 -172159524 - AluSc SINE Alu -18 291 1 1241 207 113 51 chr6 10255873 10256308 -172158934 - MLT1C LTR MaLR 0 467 6 441 0 0 0 chr6 10256644 10256693 -172158549 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 293 65 65 chr6 10258308 10258431 -172156811 + MIR SINE MIR 20 142 -66 1849 179 38 57 chr6 10258665 10259211 -172156031 + MLT2C2 LTR ERVL 1 464 0 377 231 43 17 chr6 10259371 10259488 -172155754 + MIR SINE MIR 133 252 -10 444 254 111 0 chr6 10259559 10259685 -172155557 - MIR SINE MIR -60 202 63 297 75 0 0 chr6 10261042 10261082 -172154160 + (CA)n Simple_repeat Simple_repeat 2 41 0 1503 167 28 4 chr6 10261676 10261928 -172153314 + AluJo SINE Alu 1 258 -54 2198 125 7 0 chr6 10262523 10262818 -172152424 - AluSx SINE Alu -15 297 1 31 68 0 0 chr6 10262830 10262889 -172152353 + AT_rich Low_complexity Low_complexity 1 59 0 241 97 69 0 chr6 10262898 10262970 -172152272 + (TA)n Simple_repeat Simple_repeat 1 77 0 329 308 47 37 chr6 10263327 10263434 -172151808 - L2 LINE L2 -14 3299 3192 1663 170 0 52 chr6 10263761 10264067 -172151175 + AluJb SINE Alu 1 290 -22 254 214 0 14 chr6 10266131 10266201 -172149041 + GA-rich Low_complexity Low_complexity 2 70 0 436 278 32 8 chr6 10267715 10267841 -172147401 + L2 LINE L2 3180 3308 -5 256 352 67 88 chr6 10268000 10268341 -172146901 - L2 LINE L2 -20 3252 2919 602 215 169 31 chr6 10268518 10268713 -172146529 - L2 LINE L2 0 3313 3092 2542 115 28 0 chr6 10270471 10270870 -172144372 - L1PA8 LINE L1 -3 6169 5760 22 0 0 0 chr6 10271393 10271415 -172143827 + AT_rich Low_complexity Low_complexity 1 22 0 1781 161 6 43 chr6 10271546 10271870 -172143372 - AluJo SINE Alu 0 312 1 21 36 0 0 chr6 10272835 10272863 -172142379 + AT_rich Low_complexity Low_complexity 1 28 0 1755 131 22 11 chr6 10273095 10273370 -172141872 + AluSx SINE Alu 35 312 0 218 71 0 48 chr6 10274231 10274273 -172140969 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 324 0 0 0 chr6 10275981 10276017 -172139225 + (CA)n Simple_repeat Simple_repeat 2 37 0 1946 148 0 20 chr6 10276160 10276457 -172138785 - AluSx SINE Alu -21 291 1 14610 133 18 6 chr6 10276478 10278868 -172136374 + Tigger1 DNA MER2_type 1 2418 0 282 348 0 11 chr6 10278926 10279018 -172136224 + L2 LINE L2 3180 3270 -2 254 238 0 16 chr6 10279648 10279711 -172135531 + LTR67 LTR ERVL 496 557 0 2283 108 0 0 chr6 10280018 10280323 -172134919 + AluSq SINE Alu 1 305 -8 358 122 0 122 chr6 10280442 10280516 -172134726 + FLAM SINE Alu 65 129 -4 5489 94 1 30 chr6 10280850 10281707 -172133535 + L1PA14 LINE L1 5326 6157 -4 1604 163 52 14 chr6 10282020 10282309 -172132933 + AluSq SINE Alu 1 300 -13 622 214 66 6 chr6 10283306 10283488 -172131754 + MER33 DNA MER1_type 34 226 -98 1614 168 0 22 chr6 10283563 10283837 -172131405 - AluJo SINE Alu -8 304 37 287 340 80 13 chr6 10284626 10284776 -172130466 + MIR SINE MIR 5 164 -98 509 264 117 78 chr6 10284779 10284833 -172130409 + MLT1J LTR MaLR 5 55 -456 2162 99 3 0 chr6 10284833 10285138 -172130104 + AluSq SINE Alu 1 306 0 509 264 117 78 chr6 10285138 10285415 -172129827 + MLT1J LTR MaLR 55 350 -161 12126 158 6 5 chr6 10285415 10288455 -172126787 + L1PA13 LINE L1 3115 6144 -19 200 191 64 138 chr6 10288562 10288656 -172126586 + MIR SINE MIR 176 262 0 219 146 0 0 chr6 10288702 10288743 -172126499 + (CA)n Simple_repeat Simple_repeat 2 42 0 23 33 0 0 chr6 10291402 10291432 -172123810 + AT_rich Low_complexity Low_complexity 1 30 0 2263 45 49 14 chr6 10291618 10291905 -172123337 + AluY SINE Alu 1 297 -14 2402 73 0 28 chr6 10291909 10292226 -172123016 + AluY SINE Alu 1 308 -3 21 36 0 0 chr6 10292959 10292987 -172122255 + AT_rich Low_complexity Low_complexity 1 28 0 638 161 54 0 chr6 10293170 10293300 -172121942 - L1MB1 LINE L1 0 6168 6032 28 0 0 0 chr6 10294774 10294802 -172120440 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr6 10294872 10294904 -172120338 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 23 0 0 0 chr6 10296895 10296918 -172118324 + AT_rich Low_complexity Low_complexity 1 23 0 1885 151 10 3 chr6 10297158 10297450 -172117792 + AluJo SINE Alu 11 304 -8 3910 152 91 26 chr6 10299044 10299514 -172115728 + pTR5 LTR ERV1 743 1181 -1257 192 77 0 0 chr6 10299514 10299540 -172115702 + (CCCCCG)n Simple_repeat Simple_repeat 2 27 0 3910 152 91 26 chr6 10299540 10300372 -172114870 + pTR5 LTR ERV1 1181 2438 0 1881 121 44 24 chr6 10300487 10300785 -172114457 + AluSx SINE Alu 1 304 -8 621 276 66 29 chr6 10301342 10301585 -172113657 + Charlie8 DNA MER1_type 23 274 -2143 287 302 86 26 chr6 10301607 10301723 -172113519 + L2 LINE L2 3190 3312 -1 328 235 0 0 chr6 10301926 10301994 -172113248 + Charlie8 DNA MER1_type 1350 1417 -1000 2482 69 0 0 chr6 10302233 10302536 -172112706 + AluY SINE Alu 1 303 -8 1781 289 122 33 chr6 10302636 10303050 -172112192 + L1MCc LINE L1 11 387 -6554 956 209 80 0 chr6 10303050 10303251 -172111991 + MER20 DNA MER1_type 3 219 0 1781 289 122 33 chr6 10303251 10303728 -172111514 + L1MCc LINE L1 387 820 -6121 2223 110 0 3 chr6 10303728 10304019 -172111223 + AluSc SINE Alu 1 290 -19 1781 289 122 33 chr6 10304019 10305105 -172110137 + L1MCc LINE L1 820 2171 -4770 2193 122 0 6 chr6 10305115 10305426 -172109816 + AluSx SINE Alu 1 309 -3 312 313 28 85 chr6 10305517 10305728 -172109514 + L1ME1 LINE L1 92 290 -6569 420 263 66 116 chr6 10305985 10306244 -172108998 + L1ME1 LINE L1 954 1199 -5656 897 243 13 75 chr6 10306298 10306673 -172108569 + L1ME1 LINE L1 1212 1563 -5296 28 79 0 0 chr6 10306680 10306743 -172108499 + AT_rich Low_complexity Low_complexity 1 63 0 345 212 112 39 chr6 10306745 10306924 -172108318 + L1ME1 LINE L1 5780 5971 -986 1260 264 74 42 chr6 10306924 10307425 -172107817 - MLT1E3 LTR MaLR -24 600 84 947 204 13 4 chr6 10307527 10307752 -172107490 + L1ME1 LINE L1 5988 6214 -743 1177 237 116 39 chr6 10307757 10308250 -172106992 + L1ME1 LINE L1 6435 6965 -12 29 90 0 0 chr6 10308537 10308615 -172106627 + AT_rich Low_complexity Low_complexity 1 78 0 315 224 47 0 chr6 10308645 10308730 -172106512 + MLT1C LTR MaLR 3 91 -376 329 250 69 17 chr6 10308736 10308884 -172106358 - MLT1E3 LTR MaLR -409 217 80 1711 168 45 17 chr6 10308918 10309276 -172105966 + MLT1C LTR MaLR 95 462 -5 2007 90 68 0 chr6 10309975 10310134 -172105108 - AluSc SINE Alu -11 298 151 216 0 0 0 chr6 10310134 10310158 -172105084 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2007 90 68 0 chr6 10310158 10310277 -172104965 - AluSc SINE Alu -158 151 1 1656 57 31 0 chr6 10310382 10310610 -172104632 - L1PA13 LINE L1 -2 6161 5927 6308 160 21 5 chr6 10310642 10311997 -172103245 - L1P4 LINE L1 -694 5474 4106 2551 151 15 6 chr6 10312005 10312474 -172102768 - L1PA16 LINE L1 -20 6146 5674 321 261 46 76 chr6 10312674 10312833 -172102409 - HAL1 LINE L1 -1242 1265 1103 2040 130 13 3 chr6 10312833 10313134 -172102108 - AluSx SINE Alu -8 304 1 321 261 46 76 chr6 10313134 10313410 -172101832 - HAL1 LINE L1 -1404 1103 843 1150 213 94 70 chr6 10313732 10314344 -172100898 - Charlie2 DNA MER1_type -7 2855 2222 357 225 93 16 chr6 10314344 10314473 -172100769 - MER91C DNA MER1_type -1 139 1 1150 213 94 70 chr6 10314473 10314563 -172100679 - Charlie2 DNA MER1_type -640 2222 2136 436 286 110 6 chr6 10314683 10314865 -172100377 - Charlie2 DNA MER1_type -2593 269 69 329 312 142 35 chr6 10316145 10316286 -172098956 - L2 LINE L2 -1 3271 3116 611 258 59 11 chr6 10316438 10316624 -172098618 - MIR SINE MIR -51 211 17 2033 141 92 8 chr6 10316636 10317027 -172098215 - MSTA LTR MaLR -4 424 1 374 189 0 0 chr6 10317854 10317928 -172097314 - MER5A DNA MER1_type -115 74 1 666 290 59 11 chr6 10317940 10318126 -172097116 + MIR3 SINE MIR 13 207 -1 2073 105 3 33 chr6 10318434 10318739 -172096503 + AluSg SINE Alu 1 296 -14 6600 48 7 0 chr6 10319895 10320716 -172094526 + L1PA5 LINE L1 5321 6147 -7 38 0 0 0 chr6 10320716 10320754 -172094488 + AT_rich Low_complexity Low_complexity 1 38 0 1087 292 64 7 chr6 10320756 10321211 -172094031 - L1ME LINE L1 -424 5746 5266 199 329 35 35 chr6 10321471 10321614 -172093628 + L3b LINE CR1 1102 1244 -339 822 271 248 34 chr6 10321616 10322079 -172093163 + L2 LINE L2 2450 2813 -500 201 39 0 0 chr6 10322079 10322105 -172093137 + (CA)n Simple_repeat Simple_repeat 2 27 0 822 271 248 34 chr6 10322105 10322333 -172092909 + L2 LINE L2 2813 3312 -1 249 246 0 0 chr6 10322418 10322479 -172092763 + GA-rich Low_complexity Low_complexity 2 62 0 1344 101 0 0 chr6 10322919 10323097 -172092145 - AluSg SINE Alu -14 298 121 40561 32 25 2 chr6 10323097 10329102 -172086140 - L1PA2 LINE L1 -7 6148 6 737 128 18 0 chr6 10329102 10329211 -172086031 - AluSg SINE Alu -170 140 30 1720 189 3 19 chr6 10329322 10329629 -172085613 - AluJb SINE Alu -10 302 1 310 196 98 23 chr6 10330266 10330399 -172084843 - L1MC4 LINE L1 -2 8040 7898 591 243 171 0 chr6 10331014 10331166 -172084076 - MER5B DNA MER1_type 0 178 1 418 243 223 14 chr6 10331173 10331321 -172083921 - MER5A DNA MER1_type -7 182 4 1223 235 65 63 chr6 10331486 10331929 -172083313 - MER21B LTR ERV1 -57 806 363 1095 186 4 59 chr6 10332015 10332251 -172082991 - MER21B LTR ERV1 -539 324 102 239 214 0 18 chr6 10332332 10332388 -172082854 - MER21B LTR ERV1 -797 66 12 821 204 68 0 chr6 10332439 10332615 -172082627 + MER5A DNA MER1_type 2 189 0 393 266 143 26 chr6 10332682 10332836 -172082406 + MER5B DNA MER1_type 1 172 -6 194 57 57 0 chr6 10334299 10334334 -172080908 + A-rich Low_complexity Low_complexity 4 40 0 362 303 59 16 chr6 10335868 10336012 -172079230 - MIR SINE MIR -42 166 15 23 0 0 0 chr6 10336263 10336286 -172078956 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr6 10337210 10337245 -172077997 + (A)n Simple_repeat Simple_repeat 1 35 0 278 305 92 29 chr6 10337481 10337655 -172077587 - MIR SINE MIR -1 261 77 212 132 0 26 chr6 10338267 10338305 -172076937 + MIR SINE MIR 220 256 -6 824 209 74 0 chr6 10339873 10340036 -172075206 - MER45A DNA AcHobo 0 178 4 367 282 31 53 chr6 10340186 10340413 -172074829 - L1ME3A LINE L1 -303 5867 5646 293 273 41 2 chr6 10340399 10340594 -172074648 - L1MEc LINE L1 -3890 2650 2444 * 425 364 46 8 chr6 10340865 10341104 -172074138 - L1MEc LINE L1 -4579 2142 1895 412 287 73 10 chr6 10341261 10341550 -172073692 - L1MEc LINE L1 -4894 1636 1330 1981 105 0 0 chr6 10342138 10342395 -172072847 - AluSx SINE Alu -1 311 55 405 0 0 0 chr6 10342428 10342473 -172072769 + (TG)n Simple_repeat Simple_repeat 2 46 0 184 283 0 0 chr6 10343563 10343609 -172071633 + L2 LINE L2 3224 3269 -3 202 273 15 0 chr6 10343767 10343833 -172071409 + (CA)n Simple_repeat Simple_repeat 2 68 0 228 240 0 0 chr6 10343851 10343951 -172071291 + (CA)n Simple_repeat Simple_repeat 1 100 0 532 211 0 0 chr6 10345441 10345550 -172069692 + L1PB4 LINE L1 6040 6148 -8 472 162 0 0 chr6 10345664 10345738 -172069504 + AluS SINE Alu 1 74 -235 39 0 0 0 chr6 10345788 10345827 -172069415 + AT_rich Low_complexity Low_complexity 1 39 0 603 183 117 103 chr6 10346213 10346426 -172068816 - MER20 DNA MER1_type 0 219 4 216 0 0 0 chr6 10346857 10346881 -172068361 + (A)n Simple_repeat Simple_repeat 1 24 0 2722 246 70 11 chr6 10346892 10348134 -172067108 + L1ME1 LINE L1 4845 6166 0 456 19 0 0 chr6 10348355 10348408 -172066834 + (CA)n Simple_repeat Simple_repeat 2 54 0 226 143 24 0 chr6 10348416 10348458 -172066784 + GA-rich Low_complexity Low_complexity 2 44 0 204 263 11 32 chr6 10349352 10349447 -172065795 + A-rich Low_complexity Low_complexity 3 95 0 360 0 0 0 chr6 10349604 10349644 -172065598 + (CA)n Simple_repeat Simple_repeat 2 41 0 1652 191 26 37 chr6 10350270 10350548 -172064694 + MLT2B3 LTR ERVL 1 276 -278 2429 95 0 0 chr6 10350548 10350853 -172064389 + AluSg SINE Alu 1 305 -5 1652 191 26 37 chr6 10350853 10350925 -172064317 + MLT2B3 LTR ERVL 276 347 -207 317 202 202 0 chr6 10350917 10351001 -172064241 + MLT1E LTR MaLR 493 593 0 * 2349 137 11 3 chr6 10351632 10351991 -172063251 - THE1B LTR MaLR 0 364 3 1072 157 51 37 chr6 10352122 10352338 -172062904 - MER20 DNA MER1_type 0 219 1 1324 187 33 0 chr6 10352464 10352769 -172062473 + MER33 DNA MER1_type 10 324 0 21 0 0 0 chr6 10353178 10353199 -172062043 + AT_rich Low_complexity Low_complexity 1 21 0 304 150 44 35 chr6 10356638 10356751 -172058491 + (TA)n Simple_repeat Simple_repeat 2 115 0 966 199 39 0 chr6 10357575 10357756 -172057486 + MER5A DNA MER1_type 1 188 -1 814 136 7 57 chr6 10357954 10358094 -172057148 + FLAM_C SINE Alu 1 133 0 32 43 0 0 chr6 10358094 10358140 -172057102 + AT_rich Low_complexity Low_complexity 1 46 0 1029 58 0 0 chr6 10358203 10358324 -172056918 + AluY SINE Alu 174 294 -17 262 246 108 0 chr6 10358366 10358431 -172056811 + MIR SINE MIR 119 190 -72 3404 128 8 3 chr6 10358442 10359391 -172055851 - L1P4 LINE L1 -415 5746 4795 677 148 16 0 chr6 10359387 10359515 -172055727 + L1P4 LINE L1 4637 4766 -1380 * 23 54 0 0 chr6 10359668 10359705 -172055537 + AT_rich Low_complexity Low_complexity 1 37 0 1289 147 14 0 chr6 10360681 10360899 -172054343 + L1PA15 LINE L1 5938 6158 -7 450 143 13 0 chr6 10361106 10361183 -172054059 - MER116 DNA Mariner 0 80 3 26 0 0 0 chr6 10361461 10361487 -172053755 + AT_rich Low_complexity Low_complexity 1 26 0 810 204 43 69 chr6 10361770 10362001 -172053241 + MIR SINE MIR 2 226 -36 1056 140 0 48 chr6 10362958 10363144 -172052098 + AluSg/x SINE Alu 129 305 -5 431 341 30 12 chr6 10363288 10363455 -172051787 + MIR SINE MIR 17 186 -76 188 254 34 17 chr6 10363494 10363553 -172051689 + MIR SINE MIR 184 243 -19 1362 184 62 0 chr6 10363581 10363901 -172051341 + L1MA9 LINE L1 5963 6302 -10 24 53 0 0 chr6 10364788 10364826 -172050416 + AT_rich Low_complexity Low_complexity 1 38 0 1046 232 70 29 chr6 10364859 10365174 -172050068 - MER2 DNA MER2_type -3 342 15 345 335 99 0 chr6 10365613 10365774 -172049468 - L3 LINE CR1 -135 1442 1266 539 310 30 22 chr6 10365799 10365862 -172049380 - MIR SINE MIR -3 259 198 14074 124 46 14 chr6 10365862 10367923 -172047319 - Tigger1 DNA MER2_type -1 2417 273 2205 112 0 0 chr6 10367923 10368217 -172047025 + AluSc SINE Alu 16 309 0 14074 124 46 14 chr6 10368217 10368498 -172046744 - Tigger1 DNA MER2_type -2145 273 2 539 310 30 22 chr6 10368498 10368717 -172046525 - MIR SINE MIR -64 198 2 270 233 0 0 chr6 10369331 10369391 -172045851 + MER115 DNA AcHobo 2 61 -632 508 301 64 0 chr6 10369426 10369582 -172045660 + MLT1I LTR MaLR 244 409 0 21 36 0 0 chr6 10369654 10369682 -172045560 + AT_rich Low_complexity Low_complexity 1 28 0 305 268 16 24 chr6 10370909 10371032 -172044210 + (TA)n Simple_repeat Simple_repeat 1 122 0 277 159 14 14 chr6 10371109 10371153 -172044089 + (CA)n Simple_repeat Simple_repeat 2 48 -22 1285 190 85 45 chr6 10371153 10371484 -172043758 + MER2 DNA MER2_type 1 344 0 277 159 14 14 chr6 10371484 10371508 -172043734 + (CA)n Simple_repeat Simple_repeat 47 70 0 3600 52 0 0 chr6 10372113 10372559 -172042683 - L1PA7 LINE L1 -3 6151 5706 381 277 115 17 chr6 10372747 10372982 -172042260 + MIR SINE MIR 1 258 -4 443 314 47 47 chr6 10373637 10373809 -172041433 - MIR3 SINE MIR -21 187 16 2328 70 27 10 chr6 10374087 10374388 -172040854 + AluY SINE Alu 1 306 -5 189 74 0 0 chr6 10374997 10375024 -172040218 + (CCA)n Simple_repeat Simple_repeat 3 29 0 2526 59 0 0 chr6 10376184 10376489 -172038753 - AluY SINE Alu -6 305 1 385 258 102 60 chr6 10376548 10376715 -172038527 + MIR SINE MIR 55 228 -34 195 291 18 0 chr6 10377506 10377561 -172037681 + L2 LINE L2 3235 3290 -23 230 302 43 43 chr6 10377794 10377933 -172037309 + L2 LINE L2 2113 2251 -1063 1185 99 0 0 chr6 10377935 10378110 -172037132 + AluSq SINE Alu 132 306 0 2058 154 65 8 chr6 10378214 10378596 -172036646 - L1P LINE L1 -5185 961 558 1786 148 4 0 chr6 10378599 10378863 -172036379 - AluSx SINE Alu -10 302 38 293 318 61 99 chr6 10378893 10379305 -172035937 + L2 LINE L2 2872 3267 -5 948 198 0 0 chr6 10379504 10379671 -172035571 + AluJb SINE Alu 133 299 -13 1202 204 88 23 chr6 10379671 10379979 -172035263 - MER63B DNA MER1_type -101 335 8 293 321 79 60 chr6 10380045 10380578 -172034664 + L2 LINE L2 2647 3189 -83 195 42 0 0 chr6 10382102 10382126 -172033116 + (T)n Simple_repeat Simple_repeat 1 24 0 903 165 111 15 chr6 10382264 10382525 -172032717 - Charlie5 DNA MER1_type 0 2613 2328 1338 150 133 3 chr6 10382530 10382667 -172032575 - L1MA9 LINE L1 -3 6309 6191 302 67 22 0 chr6 10382667 10382712 -172032530 + (TG)n Simple_repeat Simple_repeat 1 46 0 1338 150 133 3 chr6 10382712 10382860 -172032382 - L1MA9 LINE L1 -121 6191 5987 5960 178 125 39 chr6 10382865 10384470 -172030772 - Charlie5 DNA MER1_type -276 2336 594 1096 199 50 32 chr6 10384474 10384756 -172030486 - Charlie5 DNA MER1_type -2319 293 7 264 267 27 13 chr6 10385200 10385275 -172029967 + L2 LINE L2 3238 3313 0 343 301 34 27 chr6 10388272 10388418 -172026824 - MIR3 SINE MIR -2 206 60 570 234 90 45 chr6 10391385 10391586 -172023656 + MIR SINE MIR 19 228 -34 2299 89 26 0 chr6 10391752 10392056 -172023186 + AluSq SINE Alu 1 312 -1 262 284 0 0 chr6 10392286 10392381 -172022861 - L1MC4 LINE L1 -1334 6708 6614 229 282 0 0 chr6 10392307 10392392 -172022850 + L1MC4 LINE L1 6614 6698 -1344 * 2174 87 14 3 chr6 10392856 10393145 -172022097 + AluY SINE Alu 1 292 -19 512 124 45 11 chr6 10393371 10393460 -172021782 - LTR23 LTR ERV1 -42 395 304 379 363 58 5 chr6 10396653 10396905 -172018337 - MIR SINE MIR 0 262 2 195 42 0 0 chr6 10397035 10397059 -172018183 + (A)n Simple_repeat Simple_repeat 1 24 0 716 268 17 6 chr6 10397061 10397240 -172018002 + MIR SINE MIR 65 245 -17 696 153 29 62 chr6 10397301 10397534 -172017708 + LTR12 LTR ERV1 1 287 -427 276 228 33 22 chr6 10397534 10397626 -172017616 + LTR30 LTR ERV1 551 643 -79 674 120 0 0 chr6 10397628 10397728 -172017514 + LTR12 LTR ERV1 615 714 0 1528 204 24 30 chr6 10397728 10398067 -172017175 - MLT1A1 LTR MaLR -28 337 1 319 310 98 35 chr6 10398443 10398617 -172016625 + MIR3 SINE MIR 18 202 -6 2677 181 28 19 chr6 10399217 10399785 -172015457 - L1MD3 LINE L1 -14 7981 7409 327 302 12 0 chr6 10399785 10399871 -172015371 - MLT1F1 LTR MaLR -436 131 45 351 0 0 0 chr6 10401040 10401079 -172014163 + (TG)n Simple_repeat Simple_repeat 1 39 0 188 247 178 14 chr6 10401525 10401598 -172013644 + MIR SINE MIR 101 185 -77 1469 171 54 6 chr6 10401917 10402233 -172013009 - L1MB3 LINE L1 -2 6181 5851 270 116 0 0 chr6 10402410 10402453 -172012789 + (CA)n Simple_repeat Simple_repeat 1 43 0 369 0 0 0 chr6 10404864 10404905 -172010337 + (CA)n Simple_repeat Simple_repeat 1 41 0 216 246 14 14 chr6 10405056 10405125 -172010117 + (TA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chr6 10406637 10406661 -172008581 + AT_rich Low_complexity Low_complexity 1 24 0 6836 172 60 18 chr6 10407355 10409180 -172006062 + L1MB3 LINE L1 370 2500 -3884 7261 155 25 14 chr6 10409192 10411863 -172003379 + L1MB3 LINE L1 3170 6109 -310 436 314 44 40 chr6 10411997 10412223 -172003019 + MIR SINE MIR 35 261 -1 25 0 0 0 chr6 10413827 10413852 -172001390 + AT_rich Low_complexity Low_complexity 1 25 0 848 126 44 0 chr6 10413919 10414054 -172001188 - L1MA5A LINE L1 -3 6294 6154 293 266 91 32 chr6 10414057 10414249 -172000993 - MIR SINE MIR -46 216 16 1679 214 81 19 chr6 10414333 10414855 -172000387 + MLT1F LTR MaLR 3 542 0 408 348 98 5 chr6 10415049 10415273 -171999969 + MIR SINE MIR 15 259 -3 204 217 0 22 chr6 10416427 10416473 -171998769 - MIR3 SINE MIR -15 193 149 601 298 11 27 chr6 10417956 10418144 -171997098 - MER5A DNA MER1_type -1 188 4 187 355 204 17 chr6 10419952 10420124 -171995118 - L2 LINE L2 -388 2926 2723 234 384 6 40 chr6 10420188 10420365 -171994877 - L2 LINE L2 -593 2721 2551 253 248 124 26 chr6 10420412 10420525 -171994717 - L2 LINE L2 -927 2387 2264 25 31 0 0 chr6 10421491 10421523 -171993719 + AT_rich Low_complexity Low_complexity 1 32 0 2051 139 0 3 chr6 10421935 10422236 -171993006 - AluJb SINE Alu -12 300 1 1610 179 17 7 chr6 10422900 10423191 -171992051 + AluJb SINE Alu 1 294 -18 251 302 12 12 chr6 10423507 10423593 -171991649 - MIR SINE MIR -97 165 80 1088 305 43 12 chr6 10423845 10424422 -171990820 + L1MC/D LINE L1 2236 2830 -3316 353 341 72 49 chr6 10424619 10424892 -171990350 + L1MC/D LINE L1 5359 5635 -486 198 0 0 0 chr6 10425309 10425331 -171989911 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 711 289 9 5 chr6 10425900 10426111 -171989131 - MIR SINE MIR -3 259 48 388 147 21 63 chr6 10426242 10426337 -171988905 + MER74A LTR ERVL 6 96 -462 * 1364 164 44 41 chr6 10426305 10426598 -171988644 + MER74A LTR ERVL 256 549 -9 2795 7 0 0 chr6 10427625 10427925 -171987317 + AluYa5 SINE Alu 1 300 -11 296 251 235 36 chr6 10428168 10428346 -171986896 - MIR SINE MIR -6 256 45 1543 167 44 20 chr6 10429659 10429953 -171985289 + AluJb SINE Alu 1 301 -11 383 219 106 53 chr6 10430426 10430577 -171984665 + MER5A DNA MER1_type 1 159 -30 7925 112 145 37 chr6 10430772 10432295 -171982947 - pTR5 LTR ERV1 -10 2428 742 753 127 0 18 chr6 10433119 10433229 -171982013 + FLAM_C SINE Alu 23 130 -13 1799 102 125 0 chr6 10433234 10433498 -171981744 + AluSp SINE Alu 1 297 -16 357 197 6 34 chr6 10433520 10433698 -171981544 + (TA)n Simple_repeat Simple_repeat 1 173 0 292 258 0 31 chr6 10433716 10433813 -171981429 + (TA)n Simple_repeat Simple_repeat 1 94 0 1263 242 74 12 chr6 10434178 10434375 -171980867 - MLT1A2 LTR MaLR -2 372 146 2114 112 20 7 chr6 10434375 10434679 -171980563 - AluSc SINE Alu -1 308 1 1263 242 74 12 chr6 10434679 10434807 -171980435 - MLT1A2 LTR MaLR -228 146 27 2144 120 27 0 chr6 10434812 10435112 -171980130 + AluSx SINE Alu 1 308 -4 2140 123 0 19 chr6 10437431 10437739 -171977503 + AluSq SINE Alu 1 302 -11 5001 195 27 48 chr6 10437920 10438972 -171976270 - MLT1A1-int LTR MaLR -706 1029 1 586 241 0 0 chr6 10438972 10439084 -171976158 - MLT1A1 LTR MaLR 0 365 254 389 89 0 0 chr6 10439083 10439139 -171976103 - MLT1A1 LTR MaLR -309 56 1 * 218 351 106 0 chr6 10439139 10439233 -171976009 + MIR SINE MIR 127 230 -32 * 377 351 9 0 chr6 10439232 10439343 -171975899 + L2 LINE L2 3160 3271 -1 297 75 0 0 chr6 10440190 10440230 -171975012 + (TG)n Simple_repeat Simple_repeat 1 40 0 276 200 0 0 chr6 10440893 10440958 -171974284 + GA-rich Low_complexity Low_complexity 4 68 0 189 74 0 0 chr6 10440966 10440993 -171974249 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 207 0 0 0 chr6 10441813 10441836 -171973406 + (CCA)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr6 10442561 10442598 -171972644 + (TG)n Simple_repeat Simple_repeat 1 37 0 363 282 62 43 chr6 10442906 10443081 -171972161 - MIR3 SINE MIR -18 190 15 288 0 0 0 chr6 10443380 10443412 -171971830 + (TG)n Simple_repeat Simple_repeat 2 33 0 1966 161 3 3 chr6 10443875 10444186 -171971056 + AluJo SINE Alu 1 311 -1 698 242 59 11 chr6 10444236 10444422 -171970820 - MIR SINE MIR -34 228 34 321 26 0 0 chr6 10444881 10444919 -171970323 + (CA)n Simple_repeat Simple_repeat 2 39 0 2151 89 0 4 chr6 10445350 10445619 -171969623 + AluSq SINE Alu 1 268 -45 236 30 30 0 chr6 10446896 10446929 -171968313 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 832 188 0 7 chr6 10446933 10447077 -171968165 - FRAM SINE Alu -30 146 4 2145 122 3 0 chr6 10447298 10447593 -171967649 + AluSx SINE Alu 1 296 -16 2140 92 4 0 chr6 10448394 10448667 -171966575 + AluSq SINE Alu 1 274 -39 1897 169 102 37 chr6 10448842 10449056 -171966186 - MSTA LTR MaLR 0 428 229 2346 94 0 13 chr6 10449056 10449363 -171965879 - AluY SINE Alu -8 303 1 1897 169 102 37 chr6 10449363 10449550 -171965692 - MSTA LTR MaLR -199 229 1 2118 101 4 0 chr6 10449620 10449898 -171965344 - AluSc SINE Alu -30 279 1 9274 147 11 36 chr6 10449900 10451488 -171963754 - MSTA-int LTR MaLR -30 1550 3 1807 162 128 8 chr6 10451490 10451842 -171963400 - MSTA LTR MaLR 0 428 35 180 0 0 0 chr6 10453303 10453323 -171961919 + (CA)n Simple_repeat Simple_repeat 2 21 0 2108 108 0 14 chr6 10453983 10454306 -171960936 + AluSx SINE Alu 1 319 0 1488 177 17 33 chr6 10455500 10455799 -171959443 + AluJo SINE Alu 11 304 -8 22 0 0 0 chr6 10457424 10457446 -171957796 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 86 53 chr6 10457472 10457557 -171957685 - MIR SINE MIR -75 187 93 2222 116 0 0 chr6 10457557 10457851 -171957391 + AluSg SINE Alu 1 294 -16 235 311 86 53 chr6 10457851 10457916 -171957326 - MIR SINE MIR -169 93 32 2258 99 0 0 chr6 10459614 10459908 -171955334 - AluSg1 SINE Alu -11 298 5 186 0 88 0 chr6 10459983 10460017 -171955225 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1943 137 0 33 chr6 10460439 10460738 -171954504 - AluJb SINE Alu -23 289 1 1141 163 153 89 chr6 10462225 10462507 -171952735 + AluJb SINE Alu 2 301 -1 21 0 0 0 chr6 10462489 10462510 -171952732 + AT_rich Low_complexity Low_complexity 1 21 0 2307 101 3 0 chr6 10463756 10464052 -171951190 - AluSg SINE Alu -13 297 1 1634 179 102 43 chr6 10464135 10464509 -171950733 + MSTD LTR MaLR 1 396 0 506 121 35 103 chr6 10464953 10465017 -171950225 - MSTC LTR MaLR -320 108 54 2291 113 0 0 chr6 10465017 10465310 -171949932 - AluSg SINE Alu -17 293 1 506 121 35 103 chr6 10465310 10465361 -171949881 - MSTC LTR MaLR -374 54 1 22 0 0 0 chr6 10466024 10466046 -171949196 + AT_rich Low_complexity Low_complexity 1 22 0 611 213 87 14 chr6 10468007 10468181 -171947061 + LTR33 LTR ERVL 15 178 -343 1822 87 0 0 chr6 10468838 10469068 -171946174 + AluSg/x SINE Alu 80 309 -1 188 65 0 32 chr6 10469816 10469847 -171945395 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1156 42 0 0 chr6 10472092 10472234 -171943008 - AluY SINE Alu -8 303 162 336 24 0 0 chr6 10472406 10472447 -171942795 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 348 45 9 chr6 10472928 10473040 -171942202 + L2 LINE L2 3178 3293 -20 399 300 61 118 chr6 10473057 10473320 -171941922 - MIR SINE MIR -1 261 14 1338 256 113 39 chr6 10473806 10474344 -171940898 - MLT1E LTR MaLR -4 589 12 631 264 113 55 chr6 10474524 10474835 -171940407 + MLT1H LTR MaLR 21 349 -200 298 221 3 13 chr6 10474888 10474983 -171940259 + MLT1H LTR MaLR 461 549 0 22 35 0 0 chr6 10476330 10476359 -171938883 + AT_rich Low_complexity Low_complexity 1 29 0 373 284 74 65 chr6 10476506 10476712 -171938530 + HAL1b LINE L1 96 299 -1049 2311 101 7 7 chr6 10476712 10477020 -171938222 + AluY SINE Alu 1 308 -3 373 284 74 65 chr6 10477020 10477243 -171937999 + HAL1b LINE L1 299 529 -819 25 0 0 0 chr6 10477467 10477492 -171937750 + AT_rich Low_complexity Low_complexity 1 25 0 518 168 7 121 chr6 10477499 10477648 -171937594 - FLAM_C SINE Alu -1 132 1 34 24 0 0 chr6 10477804 10477845 -171937397 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr6 10477980 10478011 -171937231 + AT_rich Low_complexity Low_complexity 1 31 0 301 286 18 9 chr6 10478247 10478359 -171936883 + L1MC/D LINE L1 4030 4142 -2004 808 310 131 40 chr6 10478400 10479388 -171935854 + L1MC/D LINE L1 4245 5321 -825 288 294 12 0 chr6 10479389 10479474 -171935768 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 347 220 13 60 chr6 10479480 10479630 -171935612 + L1MC/D LINE L1 5346 5488 -2320 537 177 0 0 chr6 10479696 10479792 -171935450 + L1MA5A LINE L1 6196 6291 -6 675 265 87 8 chr6 10479845 10480109 -171935133 - L1ME3A LINE L1 -215 5955 5671 2111 97 4 0 chr6 10480625 10480929 -171934313 - AluSc SINE Alu 0 305 1 2216 110 0 17 chr6 10481481 10481782 -171933460 + AluSc SINE Alu 1 296 -13 232 286 0 0 chr6 10482027 10482083 -171933159 + MIR SINE MIR 94 149 -113 809 127 0 0 chr6 10482086 10482204 -171933038 + FLAM_C SINE Alu 1 118 -15 252 0 0 0 chr6 10482207 10482235 -171933007 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2270 96 0 7 chr6 10482305 10482607 -171932635 - AluSc SINE Alu -9 300 1 1855 242 36 16 chr6 10484274 10484713 -171930529 + LTR40a LTR ERVL 6 458 -61 1877 234 89 29 chr6 10484713 10485272 -171929970 + MLT1E LTR MaLR 1 593 0 1855 242 36 16 chr6 10485272 10485336 -171929906 + LTR40a LTR ERVL 458 519 0 1369 256 7 44 chr6 10485349 10485755 -171929487 + HERVL40 LTR ERVL 17 407 -5123 3037 297 35 12 chr6 10485808 10486778 -171928464 + HERVL40 LTR ERVL 2892 3883 -1647 1789 219 79 58 chr6 10486778 10487525 -171927717 + L1M4b LINE L1 1024 1785 -5070 1943 114 0 22 chr6 10487527 10487799 -171927443 + AluSx SINE Alu 1 266 -46 513 86 0 25 chr6 10487799 10487880 -171927362 + Alu SINE Alu 230 308 -4 1282 281 76 38 chr6 10487883 10488604 -171926638 + L1M4b LINE L1 1789 2687 -4451 4322 239 38 49 chr6 10488634 10490524 -171924718 + L1ME4a LINE L1 1734 3555 -2660 1681 145 36 64 chr6 10490524 10490882 -171924360 - MER7A DNA MER2_type 0 346 1 4322 239 38 49 chr6 10490882 10491007 -171924235 + L1ME4a LINE L1 3555 3680 -2535 4841 45 6 0 chr6 10491017 10491642 -171923600 + L1P LINE L1 8 636 -5510 5575 39 1 0 chr6 10491642 10492311 -171922931 + L1PA4 LINE L1 5483 6152 -3 3094 217 26 22 chr6 10492316 10493082 -171922160 + L1ME4a LINE L1 3677 4448 -1767 2158 124 0 0 chr6 10493082 10493381 -171921861 + AluSx SINE Alu 6 304 -8 3094 217 26 22 chr6 10493381 10493463 -171921779 + L1ME4a LINE L1 4448 4528 -1687 2290 87 3 0 chr6 10493473 10493773 -171921469 + AluY SINE Alu 1 301 -10 296 320 10 0 chr6 10493779 10493879 -171921363 + HERVL40 LTR ERVL 4570 4670 -353 * 1258 218 26 0 chr6 10493857 10494190 -171921052 + HERVL40 LTR ERVL 2783 5522 -8 1410 226 174 16 chr6 10494222 10494659 -171920583 + LTR40a LTR ERVL 13 518 -1 378 0 0 0 chr6 10495078 10495120 -171920122 + (CA)n Simple_repeat Simple_repeat 2 43 0 3227 62 28 9 chr6 10495322 10495776 -171919466 + L1PA6 LINE L1 5708 6169 0 1274 97 0 0 chr6 10495880 10496045 -171919197 + AluSg/x SINE Alu 130 294 -16 2094 95 70 0 chr6 10499439 10499724 -171915518 - AluSq SINE Alu -8 305 1 28 29 0 0 chr6 10499872 10499907 -171915335 + AT_rich Low_complexity Low_complexity 1 35 0 4086 129 14 3 chr6 10500066 10500731 -171914511 + L1MC1 LINE L1 5661 6332 -1 643 278 98 31 chr6 10501292 10501516 -171913726 + L1ME4a LINE L1 5228 5436 -795 1825 155 50 0 chr6 10501516 10501794 -171913448 + AluSx SINE Alu 1 292 -20 643 278 98 31 chr6 10501794 10501963 -171913279 + L1ME4a LINE L1 5436 5592 -639 198 0 0 0 chr6 10501963 10501985 -171913257 + (TA)n Simple_repeat Simple_repeat 2 23 0 643 278 98 31 chr6 10501985 10502180 -171913062 + L1ME4a LINE L1 5592 5868 -363 1676 168 0 0 chr6 10502696 10502970 -171912272 - MLT1B LTR MaLR 0 390 117 613 110 64 0 chr6 10503000 10503109 -171912133 - L1MA1 LINE L1 0 6302 6187 225 0 0 0 chr6 10503203 10503228 -171912014 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 727 54 0 54 chr6 10503514 10503548 -171911694 - MLT1B LTR MaLR -284 106 72 1894 144 32 53 chr6 10503548 10503922 -171911320 + MER47A DNA MER2_type 1 366 0 727 54 0 54 chr6 10503922 10503999 -171911243 - MLT1B LTR MaLR -318 72 1 225 0 0 0 chr6 10504605 10504630 -171910612 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 261 248 17 60 chr6 10504723 10504840 -171910402 + HAL1b LINE L1 439 550 -798 923 271 26 0 chr6 10506173 10506402 -171908840 - MIR SINE MIR -1 261 27 277 276 51 31 chr6 10506401 10506499 -171908743 + MER5A DNA MER1_type 79 178 -11 * 414 229 93 7 chr6 10506622 10506762 -171908480 + L1ME4a LINE L1 6025 6176 -14 946 218 56 23 chr6 10510107 10510323 -171904919 - MER58A DNA MER1_type 0 224 2 878 275 83 81 chr6 10511227 10511573 -171903669 - L3 LINE CR1 -2 1575 1226 1349 209 92 9 chr6 10511573 10511888 -171903354 - MER58B DNA MER1_type 0 341 1 878 275 83 81 chr6 10511888 10511974 -171903268 - L3 LINE CR1 -351 1226 1142 2259 107 0 10 chr6 10511997 10512306 -171902936 - AluSx SINE Alu 0 312 7 288 253 41 175 chr6 10512350 10512642 -171902600 - MIR SINE MIR -4 258 6 * 391 351 68 16 chr6 10512615 10512863 -171902379 - L3 LINE CR1 -1139 438 178 2412 99 0 0 chr6 10512965 10513277 -171901965 + AluSx SINE Alu 1 312 0 187 133 0 0 chr6 10513277 10513307 -171901935 + (GAAAA)n Simple_repeat Simple_repeat 5 180 0 373 282 14 28 chr6 10513307 10513449 -171901793 + MARNA DNA Mariner 427 566 -20 221 0 0 33 chr6 10513491 10513521 -171901721 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3495 108 15 2 chr6 10514148 10514618 -171900624 - L1PA11 LINE L1 -4 6170 5695 2256 108 0 23 chr6 10514629 10514935 -171900307 - AluSx SINE Alu -13 299 1 472 263 7 29 chr6 10515093 10515230 -171900012 + L2 LINE L2 3168 3301 -12 273 98 0 0 chr6 10515232 10515273 -171899969 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 682 198 150 55 chr6 10515396 10515669 -171899573 + L1MC5 LINE L1 7609 7907 -54 331 233 148 74 chr6 10515794 10515983 -171899259 - L2 LINE L2 -2 3311 3109 288 200 0 0 chr6 10516035 10516095 -171899147 + (TG)n Simple_repeat Simple_repeat 1 60 0 198 283 0 0 chr6 10516408 10516454 -171898788 + L2 LINE L2 3223 3268 -4 1347 171 87 95 chr6 10517612 10517980 -171897262 - MLT1A2 LTR MaLR -4 370 6 1120 274 84 41 chr6 10518086 10518733 -171896509 - L2 LINE L2 0 3313 2636 311 314 66 93 chr6 10518866 10519308 -171895934 - L2 LINE L2 -7 3265 2836 250 119 0 24 chr6 10519581 10519623 -171895619 - MLT1A2 LTR MaLR -301 73 33 28 0 0 0 chr6 10522344 10522372 -171892870 + AT_rich Low_complexity Low_complexity 1 28 0 2649 121 58 0 chr6 10523435 10523816 -171891426 - MER57A LTR ERV1 0 403 1 325 306 55 73 chr6 10524261 10524588 -171890654 + L2 LINE L2 2931 3251 -62 216 207 0 35 chr6 10525004 10525062 -171890180 + GA-rich Low_complexity Low_complexity 4 59 0 852 198 6 6 chr6 10525404 10525599 -171889643 - AluJ SINE Alu 0 327 133 207 0 0 0 chr6 10525599 10525622 -171889620 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1778 154 25 0 chr6 10525625 10525779 -171889463 - AluSx SINE Alu -25 287 121 393 39 0 0 chr6 10525779 10525830 -171889412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1778 154 25 0 chr6 10525830 10525955 -171889287 - AluSx SINE Alu -191 121 1 889 112 0 30 chr6 10525988 10526122 -171889120 - AluJ SINE Alu -178 134 5 1319 198 0 71 chr6 10526825 10527148 -171888094 + AluJo SINE Alu 3 302 -10 340 225 63 70 chr6 10527241 10527500 -171887742 + L1ME4a LINE L1 5694 5962 -159 201 195 0 0 chr6 10527684 10527725 -171887517 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1635 210 159 67 chr6 10527748 10527976 -171887266 + MLT1E2 LTR MaLR 2 207 -419 2355 124 18 47 chr6 10527976 10528362 -171886880 - THE1C LTR MaLR 0 375 1 1635 210 159 67 chr6 10528362 10528704 -171886538 + MLT1E2 LTR MaLR 207 625 -1 4165 128 181 105 chr6 10528963 10530406 -171884836 + pTR5 LTR ERV1 762 2437 -1 259 264 100 9 chr6 10531618 10531728 -171883514 - MIR SINE MIR -20 242 123 239 318 23 23 chr6 10531901 10531989 -171883253 - MIR SINE MIR -144 118 31 1943 132 0 7 chr6 10532018 10532299 -171882943 + AluSg SINE Alu 24 302 -8 620 226 101 20 chr6 10532317 10532516 -171882726 + L1MC5 LINE L1 7715 7929 -32 378 0 0 0 chr6 10533367 10533409 -171881833 + (CA)n Simple_repeat Simple_repeat 2 43 0 399 278 173 21 chr6 10533412 10533603 -171881639 + MLT1L LTR MaLR 312 531 -84 196 115 0 0 chr6 10534205 10534231 -171881011 - L2 LINE L2 -19 3253 3228 235 370 24 0 chr6 10534662 10534789 -171880453 - MIR3 SINE MIR -7 201 72 28 0 0 0 chr6 10535989 10536017 -171879225 + AT_rich Low_complexity Low_complexity 1 28 0 281 204 0 0 chr6 10536391 10536445 -171878797 - L2 LINE L2 0 3272 3219 696 257 50 37 chr6 10536487 10536705 -171878537 - MIR SINE MIR -19 243 23 1545 193 10 13 chr6 10536901 10537212 -171878030 + AluJo SINE Alu 1 310 -2 224 295 0 0 chr6 10537215 10537276 -171877966 + A-rich Low_complexity Low_complexity 2 62 0 2174 105 7 7 chr6 10538521 10538826 -171876416 + AluSx SINE Alu 3 307 -5 189 0 0 0 chr6 10538927 10538948 -171876294 + (A)n Simple_repeat Simple_repeat 1 21 0 1052 248 67 25 chr6 10538962 10539277 -171875965 - MLT1K LTR MaLR -69 519 192 2282 134 33 3 chr6 10539337 10539696 -171875546 - MLT1B LTR MaLR 0 390 21 377 274 32 8 chr6 10540052 10540176 -171875066 + MER103 DNA DNA 19 145 -21 2277 164 11 14 chr6 10540337 10540703 -171874539 + MLT1A1 LTR MaLR 1 365 0 448 213 11 0 chr6 10542553 10542647 -171872595 - MIR3 SINE MIR -13 195 101 198 324 84 84 chr6 10543179 10543889 -171871353 + L2 LINE L2 2246 2955 -359 465 243 17 51 chr6 10544153 10544330 -171870912 + MER104 DNA Tc2 7 177 -3 4121 61 29 2 chr6 10544330 10544840 -171870402 + L1PA8 LINE L1 5640 6163 -9 871 81 0 16 chr6 10544851 10544974 -171870268 + L1PA8 LINE L1 6052 6172 0 231 221 29 44 chr6 10545496 10545564 -171869678 - MIR SINE MIR -7 255 189 1682 196 101 16 chr6 10545582 10545959 -171869283 + LTR52 LTR ERVL 1 409 -12 279 269 0 13 chr6 10546090 10546168 -171869074 + L2 LINE L2 2599 2675 -639 1468 253 73 22 chr6 10547436 10547847 -171867395 - MER70B LTR ERVL -146 432 1 207 0 0 0 chr6 10549517 10549540 -171865702 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2241 231 47 32 chr6 10550382 10550975 -171864267 + Charlie1a DNA MER1_type 27 628 -827 204 173 19 19 chr6 10551604 10551656 -171863586 + T-rich Low_complexity Low_complexity 2 53 0 552 157 189 0 chr6 10551808 10551967 -171863275 - MER33 DNA MER1_type -19 305 117 1309 214 73 28 chr6 10551967 10552325 -171862917 - MLT1A2 LTR MaLR 0 467 1 719 183 0 15 chr6 10552325 10552441 -171862801 - MER33 DNA MER1_type -205 119 6 547 268 276 13 chr6 10553614 10553991 -171861251 + MLT1K LTR MaLR 1 476 0 195 314 175 22 chr6 10554432 10554569 -171860673 + L2 LINE L2 2630 2787 -527 2128 127 0 34 chr6 10554764 10555088 -171860154 - AluSp SINE Alu 0 313 1 2880 22 0 0 chr6 10556604 10556922 -171858320 - AluYb8 SINE Alu 0 318 1 2129 101 57 0 chr6 10557168 10557464 -171857778 + AluSq SINE Alu 1 313 0 3156 95 5 16 chr6 10557899 10558330 -171856912 + L1PA13 LINE L1 5736 6161 -2 2403 85 0 3 chr6 10558526 10558833 -171856409 - AluY SINE Alu -5 306 1 1648 151 57 72 chr6 10558835 10559240 -171856002 - Charlie1 DNA MER1_type -20 2741 2343 1957 144 26 32 chr6 10559559 10559899 -171855343 + LTR32 LTR ERVL 15 352 -119 230 86 29 0 chr6 10559948 10559983 -171855259 + LTR32 LTR ERVL 317 352 -119 226 86 29 0 chr6 10559990 10560025 -171855217 + LTR32 LTR ERVL 317 352 -119 227 114 29 0 chr6 10560073 10560108 -171855134 + LTR32 LTR ERVL 317 352 -119 227 114 29 0 chr6 10560115 10560150 -171855092 + LTR32 LTR ERVL 317 352 -119 226 114 29 0 chr6 10560199 10560234 -171855008 + LTR32 LTR ERVL 317 352 -119 238 86 29 0 chr6 10560241 10560276 -171854966 + LTR32 LTR ERVL 317 352 -119 263 29 29 0 chr6 10560283 10560318 -171854924 + LTR32 LTR ERVL 317 352 -119 233 167 0 0 chr6 10560325 10560361 -171854881 + LTR32 LTR ERVL 317 352 -119 237 30 91 0 chr6 10560368 10560401 -171854841 + LTR32 LTR ERVL 317 352 -119 821 173 26 32 chr6 10560408 10560564 -171854678 + LTR32 LTR ERVL 317 471 0 2417 166 100 35 chr6 10560569 10561003 -171854239 + MLT2B1 LTR ERVL 1 472 -48 402 21 0 0 chr6 10561003 10561050 -171854192 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2417 166 100 35 chr6 10561050 10561103 -171854139 + MLT2B1 LTR ERVL 472 520 0 358 218 206 47 chr6 10561768 10561938 -171853304 + MLT1K LTR MaLR 388 584 -4 585 222 137 0 chr6 10562831 10562984 -171852258 - MER69A DNA AcHobo -3 174 1 298 305 26 71 chr6 10563537 10563691 -171851551 + MIR SINE MIR 52 198 -64 2569 102 11 3 chr6 10564243 10564604 -171850638 + THE1B LTR MaLR 1 364 0 346 276 40 51 chr6 10564725 10565076 -171850166 + HAL1 LINE L1 835 1181 -1326 1929 144 46 0 chr6 10565196 10565481 -171849761 + AluJo SINE Alu 1 298 -14 2096 155 46 46 chr6 10565597 10566029 -171849213 - Tigger2a DNA MER2_type -2 432 1 502 301 110 29 chr6 10566521 10566755 -171848487 - MIR SINE MIR -11 251 3 392 252 63 16 chr6 10566781 10566908 -171848334 - MIR SINE MIR -46 216 84 2422 77 0 3 chr6 10568200 10568497 -171846745 + AluY SINE Alu 1 296 -15 21 0 0 0 chr6 10569726 10569747 -171845495 + AT_rich Low_complexity Low_complexity 1 21 0 740 237 49 17 chr6 10570035 10570279 -171844963 - MIR SINE MIR 0 262 20 212 133 44 0 chr6 10570704 10570749 -171844493 + T-rich Low_complexity Low_complexity 6 52 0 3234 76 40 0 chr6 10570749 10571199 -171844043 - L1PB1 LINE L1 0 6151 5684 228 111 0 0 chr6 10571214 10571250 -171843992 + (T)n Simple_repeat Simple_repeat 1 36 0 235 275 210 6 chr6 10572149 10572502 -171842740 + L1ME4a LINE L1 5696 6120 -1 364 179 439 0 chr6 10573261 10573384 -171841858 - MER5B DNA MER1_type 0 178 2 291 54 0 0 chr6 10575259 10575296 -171839946 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 286 0 77 chr6 10576740 10576831 -171838411 - L2 LINE L2 -5 3267 3184 3371 102 18 75 chr6 10577373 10577931 -171837311 - MER1A DNA MER1_type 0 527 2 198 248 70 85 chr6 10578754 10578883 -171836359 + MER5A DNA MER1_type 36 162 -27 180 77 0 0 chr6 10579567 10579593 -171835649 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 944 210 0 6 chr6 10581972 10582139 -171833103 + FRAM SINE Alu 1 166 0 1991 310 101 1 chr6 10582494 10583545 -171831697 - L2 LINE L2 0 3313 2155 415 205 24 0 chr6 10583558 10583712 -171831530 + AluJ/FRAM SINE Alu 226 381 0 813 168 17 11 chr6 10583722 10583901 -171831341 + GA-rich Low_complexity Low_complexity 1 180 0 183 312 165 0 chr6 10584045 10584154 -171831088 - L2 LINE L2 -1185 2129 2003 1665 158 45 27 chr6 10584371 10584663 -171830579 + AluJo SINE Alu 1 297 -15 625 271 70 70 chr6 10584664 10585642 -171829600 + L1MEd LINE L1 567 1581 -4729 8339 29 1 0 chr6 10585943 10587705 -171827537 + L1PA3 LINE L1 4392 6154 -1 5422 131 31 5 chr6 10588028 10589183 -171826059 + L1PB2 LINE L1 4964 6148 -3 2141 116 27 0 chr6 10589208 10589502 -171825740 + AluSx SINE Alu 1 302 -10 1481 276 90 35 chr6 10589508 10591089 -171824153 + L1MEd LINE L1 2228 3895 -2234 1433 195 0 0 chr6 10591196 10591442 -171823800 - AluJo SINE Alu -66 246 1 22 35 0 0 chr6 10591705 10591734 -171823508 + AT_rich Low_complexity Low_complexity 1 29 0 243 347 81 0 chr6 10591824 10591948 -171823294 - L2 LINE L2 -2417 897 764 189 0 0 0 chr6 10593252 10593273 -171821969 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2099 122 20 0 chr6 10594493 10594797 -171820445 + AluSq SINE Alu 1 310 -3 465 274 9 0 chr6 10594828 10594941 -171820301 - MIR3 SINE MIR -21 187 74 373 196 9 9 chr6 10595483 10595595 -171819647 + (TA)n Simple_repeat Simple_repeat 2 113 0 371 210 72 6 chr6 10595648 10595815 -171819427 + (TA)n Simple_repeat Simple_repeat 2 179 0 294 241 0 74 chr6 10597384 10597492 -171817750 + MIR SINE MIR 33 132 -76 267 307 111 56 chr6 10597949 10598291 -171816951 + MLT1K LTR MaLR 191 551 -37 628 218 8 0 chr6 10598466 10598590 -171816652 + FLAM_A SINE Alu 1 125 -8 331 296 31 75 chr6 10599033 10599192 -171816050 + MER5A DNA MER1_type 26 177 -12 340 259 28 28 chr6 10599214 10599322 -171815920 + MER5A DNA MER1_type 54 161 -28 1629 175 28 15 chr6 10599361 10599686 -171815556 - MLT1A1 LTR MaLR -13 352 24 374 254 62 57 chr6 10600054 10600231 -171815011 + MER5B DNA MER1_type 1 178 0 1622 171 14 24 chr6 10600402 10600689 -171814553 - AluJo SINE Alu -15 297 14 2085 105 14 11 chr6 10601067 10601352 -171813890 - AluSg SINE Alu -12 298 13 2059 127 3 0 chr6 10601604 10601888 -171813354 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr6 10601888 10601912 -171813330 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 484 323 40 20 chr6 10602282 10602480 -171812762 + MIR SINE MIR 23 224 -38 692 230 110 19 chr6 10602580 10602789 -171812453 + L3b LINE CR1 1103 1330 -253 1804 153 0 18 chr6 10603006 10603288 -171811954 + AluJb SINE Alu 32 308 -4 286 356 42 0 chr6 10603423 10603541 -171811701 - MIR SINE MIR -120 142 20 1954 140 14 0 chr6 10604189 10604482 -171810760 + AluSx SINE Alu 1 297 -15 271 140 0 0 chr6 10605055 10605105 -171810137 + MADE1 DNA Mariner 1 50 -30 1297 101 141 4 chr6 10605545 10605772 -171809470 - Tigger2 DNA MER2_type 0 2718 2461 4037 135 29 18 chr6 10605847 10606105 -171809137 - Tigger2 DNA MER2_type -1984 734 480 1924 124 4 0 chr6 10606105 10606371 -171808871 - AluSx SINE Alu -13 299 33 4037 135 29 18 chr6 10606371 10606830 -171808412 - Tigger2 DNA MER2_type -2238 480 9 1159 249 77 48 chr6 10607551 10608032 -171807210 + L2 LINE L2 2819 3313 0 1694 197 10 0 chr6 10609773 10610068 -171805174 + AluJb SINE Alu 1 298 -14 772 235 98 0 chr6 10610369 10610573 -171804669 + MER58A DNA MER1_type 1 224 0 2294 96 3 0 chr6 10610813 10611105 -171804137 - AluSp SINE Alu -20 293 1 1889 133 32 7 chr6 10611117 10611402 -171803840 - AluJo SINE Alu -20 292 1 2161 98 13 0 chr6 10611589 10611905 -171803337 + L1PA8 LINE L1 5851 6170 -2 900 281 50 0 chr6 10611910 10612152 -171803090 - MIR SINE MIR -3 259 6 2312 90 0 0 chr6 10612289 10612578 -171802664 - AluSc SINE Alu -20 289 1 3007 172 24 20 chr6 10613309 10613903 -171801339 + L1MC1 LINE L1 29 624 -5802 * 5124 195 28 34 chr6 10613890 10616289 -171798953 + L1MC1 LINE L1 3903 6293 -320 2033 122 21 0 chr6 10616289 10616575 -171798667 - AluSx SINE Alu -20 292 1 5124 195 28 34 chr6 10616575 10616877 -171798365 + L1MC1 LINE L1 6293 6595 -18 32 0 0 0 chr6 10616880 10616912 -171798330 + AT_rich Low_complexity Low_complexity 1 32 0 336 257 233 38 chr6 10618910 10618942 -171796300 - MIR SINE MIR -2 260 236 530 185 117 19 chr6 10618942 10619104 -171796138 - MER104 DNA MER2_type -2 178 1 336 257 233 38 chr6 10619104 10619281 -171795961 - MIR SINE MIR -26 236 10 660 200 0 9 chr6 10619663 10619778 -171795464 + FLAM_A SINE Alu 5 118 -15 1631 189 0 7 chr6 10619805 10620085 -171795157 + AluJb SINE Alu 19 296 -16 5355 124 30 45 chr6 10620480 10620755 -171794487 - L1PA16 LINE L1 -9 6157 5879 1578 151 7 52 chr6 10620755 10621027 -171794215 - AluJb SINE Alu -52 260 1 5355 124 30 45 chr6 10621027 10621634 -171793608 - L1PA16 LINE L1 -287 5879 5300 7082 55 3 6 chr6 10621634 10623253 -171791989 - L1PA6 LINE L1 -1 6153 4547 5355 124 30 45 chr6 10623253 10623516 -171791726 - L1PA16 LINE L1 -866 5300 5035 853 133 11 22 chr6 10623882 10624062 -171791180 + GA-rich Low_complexity Low_complexity 3 180 0 2303 89 17 0 chr6 10625064 10625356 -171789886 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 10626490 10626511 -171788731 + (GA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr6 10627099 10627124 -171788118 + AT_rich Low_complexity Low_complexity 1 25 0 258 32 0 0 chr6 10627200 10627231 -171788011 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 671 71 0 0 chr6 10627233 10627318 -171787924 - L1PA8 LINE L1 -13 6159 6075 2475 83 3 6 chr6 10628006 10628319 -171786923 - AluSp SINE Alu -1 312 1 217 281 122 24 chr6 10629003 10629085 -171786157 - L2 LINE L2 0 3313 3224 475 355 158 26 chr6 10629601 10630457 -171784785 - L2 LINE L2 -641 2673 1705 25 31 0 0 chr6 10630545 10630577 -171784665 + AT_rich Low_complexity Low_complexity 1 32 0 6794 222 63 30 chr6 10630807 10634174 -171781068 + L1MD1 LINE L1 19 3275 -3265 1914 164 37 70 chr6 10634174 10634656 -171780586 + MER31B LTR ERV1 1 466 0 6794 222 63 30 chr6 10634656 10635494 -171779748 + L1MD1 LINE L1 3275 4084 -2456 252 0 0 0 chr6 10635494 10635522 -171779720 + (TA)n Simple_repeat Simple_repeat 2 29 0 6794 222 63 30 chr6 10635522 10635630 -171779612 + L1MD1 LINE L1 4084 4187 -2353 1586 174 4 12 chr6 10635630 10635889 -171779353 + AluJo SINE Alu 40 296 -16 6794 222 63 30 chr6 10635889 10636203 -171779039 + L1MD1 LINE L1 4187 4968 -1572 1615 199 78 45 chr6 10636210 10636577 -171778665 - MLT1C LTR MaLR 0 467 81 2120 146 84 30 chr6 10636577 10636981 -171778261 - MSTA LTR MaLR -2 426 1 1615 199 78 45 chr6 10636981 10637060 -171778182 - MLT1C LTR MaLR -386 81 6 4249 189 41 53 chr6 10637068 10637190 -171778052 + L1MD1 LINE L1 4976 5098 -1538 2439 80 0 3 chr6 10637190 10637502 -171777740 + AluY SINE Alu 1 311 0 4249 189 41 53 chr6 10637502 10637976 -171777266 + L1MD1 LINE L1 5098 5576 -1060 2361 90 0 19 chr6 10637976 10638288 -171776954 + AluY SINE Alu 1 306 -5 4249 189 41 53 chr6 10638288 10638491 -171776751 + L1MD1 LINE L1 5576 5780 -856 2921 56 0 0 chr6 10638491 10638846 -171776396 - THE1A LTR MaLR 0 355 1 4249 189 41 53 chr6 10638846 10639392 -171775850 + L1MD1 LINE L1 5780 6310 -326 2308 102 3 0 chr6 10639392 10639687 -171775555 - AluSx SINE Alu -16 296 1 4249 189 41 53 chr6 10639687 10640011 -171775231 + L1MD1 LINE L1 6310 6636 0 341 322 175 0 chr6 10640387 10640558 -171774684 - MIR SINE MIR -12 250 50 587 53 0 0 chr6 10640571 10640647 -171774595 + Alu SINE Alu 1 76 -242 5701 83 5 1 chr6 10640667 10641486 -171773756 + L1PA12 LINE L1 5346 6167 -1 192 152 0 0 chr6 10641509 10641542 -171773700 + A-rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr6 10642700 10642732 -171772510 + AT_rich Low_complexity Low_complexity 1 32 0 328 301 21 0 chr6 10642883 10642976 -171772266 + L1MC4 LINE L1 6614 6708 -1334 1368 141 18 0 chr6 10643183 10643410 -171771832 + MLT1B LTR MaLR 1 231 -159 688 177 0 19 chr6 10643412 10643570 -171771672 + GA-rich Low_complexity Low_complexity 3 157 0 1197 51 0 17 chr6 10643583 10643760 -171771482 + (GAA)n Simple_repeat Simple_repeat 3 176 0 1062 121 24 0 chr6 10643774 10643940 -171771302 + MLT1B LTR MaLR 221 390 0 1625 193 0 60 chr6 10644343 10644496 -171770746 + AluJb SINE Alu 1 125 -187 2230 107 0 7 chr6 10644496 10644809 -171770433 + AluSc SINE Alu 1 309 0 1625 193 0 60 chr6 10644809 10644987 -171770255 + AluJb SINE Alu 125 312 0 302 171 14 0 chr6 10644989 10645059 -171770183 + GA-rich Low_complexity Low_complexity 3 73 0 2012 247 16 11 chr6 10645059 10645630 -171769612 + L1MEc LINE L1 413 986 -5410 1170 160 32 0 chr6 10645676 10645863 -171769379 + AluJb SINE Alu 87 279 -33 261 169 42 0 chr6 10645879 10645950 -171769292 + L1MEc LINE L1 1011 1084 -5312 208 275 101 0 chr6 10645950 10646019 -171769223 + MIR SINE MIR 151 226 -36 1403 131 139 59 chr6 10647047 10647384 -171767858 - THE1B LTR MaLR 0 364 1 424 239 8 90 chr6 10647712 10647846 -171767396 + MER5A DNA MER1_type 4 126 -63 280 79 4 180 chr6 10647964 10648038 -171767204 + MLT1B LTR MaLR 1 65 -309 186 43 0 0 chr6 10648066 10648089 -171767153 + (A)n Simple_repeat Simple_repeat 1 23 0 531 243 88 50 chr6 10649141 10649322 -171765920 - MIR SINE MIR -43 219 32 2225 118 3 0 chr6 10649332 10649636 -171765606 + AluSp SINE Alu 1 305 -8 1290 117 0 0 chr6 10649636 10649807 -171765435 + AluSp SINE Alu 134 304 -9 584 290 45 49 chr6 10650011 10650122 -171765120 + MIR SINE MIR 40 150 -112 2268 105 3 0 chr6 10650122 10650428 -171764814 + AluSg SINE Alu 1 307 -3 584 290 45 49 chr6 10650428 10650540 -171764702 + MIR SINE MIR 150 262 0 199 316 132 0 chr6 10650560 10650636 -171764606 + L2 LINE L2 3186 3271 -1 2325 131 14 3 chr6 10650780 10651140 -171764102 + THE1B LTR MaLR 1 364 0 2276 105 0 10 chr6 10651344 10651649 -171763593 + AluY SINE Alu 1 302 -9 1999 139 0 23 chr6 10651660 10651963 -171763279 + AluSx SINE Alu 1 296 -16 24 53 0 0 chr6 10652140 10652178 -171763064 + AT_rich Low_complexity Low_complexity 1 38 0 2167 64 0 64 chr6 10652492 10652803 -171762439 - AluY SINE Alu -20 291 1 195 42 0 0 chr6 10653330 10653354 -171761888 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 369 309 24 8 chr6 10705506 10705629 -171709613 - L2 LINE L2 0 3272 3148 736 192 49 105 chr6 10705950 10705977 -171709265 - LTR37B LTR ERV1 -1 467 440 2164 229 45 9 chr6 10705977 10706422 -171708820 + LTR40b LTR ERVL 1 461 -1 736 192 49 105 chr6 10706422 10706534 -171708708 - LTR37B LTR ERV1 -28 440 323 2271 114 0 0 chr6 10706534 10706841 -171708401 + AluSg SINE Alu 1 307 -3 736 192 49 105 chr6 10706841 10706853 -171708389 - LTR37B LTR ERV1 -145 323 312 1598 142 32 64 chr6 10706853 10707164 -171708078 + AluJb SINE Alu 1 301 -11 303 28 0 0 chr6 10707164 10707200 -171708042 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 736 192 49 105 chr6 10707200 10707331 -171707911 - LTR37B LTR ERV1 -154 314 198 500 156 43 118 chr6 10707372 10707583 -171707659 - LTR37B LTR ERV1 -268 200 6 402 252 136 7 chr6 10707584 10707739 -171707503 + MIR SINE MIR 86 260 -2 300 154 0 0 chr6 10707817 10707869 -171707373 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr6 10707988 10708018 -171707224 + AT_rich Low_complexity Low_complexity 1 30 0 957 145 42 190 chr6 10708970 10709073 -171706169 + MER33 DNA MER1_type 1 118 -2506 2140 123 3 7 chr6 10709073 10709375 -171705867 + AluSx SINE Alu 1 301 -11 957 145 42 190 chr6 10709375 10709647 -171705595 + MER33 DNA MER1_type 118 363 0 295 318 13 73 chr6 10709726 10709877 -171705365 + MIR3 SINE MIR 48 189 -19 440 294 61 39 chr6 10710144 10710324 -171704918 - MLT1I LTR MaLR -3 406 223 2042 135 4 0 chr6 10710598 10710879 -171704363 + AluSx SINE Alu 1 282 -30 2060 124 3 3 chr6 10711011 10711333 -171703909 + AluSx SINE Alu 1 322 0 589 332 24 0 chr6 10712328 10712533 -171702709 - MIR SINE MIR -6 256 47 880 173 25 12 chr6 10712558 10712720 -171702522 - MLT2C1 LTR ERVL 0 397 234 939 106 0 0 chr6 10712724 10712866 -171702376 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 1224 152 0 30 chr6 10712866 10713063 -171702179 - AluJo SINE Alu -35 277 87 1249 178 46 0 chr6 10713063 10713282 -171701960 - MLT2C1 LTR ERVL -168 229 1 2394 97 0 0 chr6 10713313 10713621 -171701621 + AluSc SINE Alu 1 308 -1 2330 102 3 13 chr6 10713795 10714110 -171701132 - AluSp SINE Alu -1 312 1 1384 152 137 31 chr6 10714383 10714678 -171700564 + AluJo SINE Alu 1 322 0 1201 174 5 9 chr6 10714709 10714922 -171700320 - AluJo SINE Alu -14 298 87 21 0 0 0 chr6 10715178 10715199 -171700043 + AT_rich Low_complexity Low_complexity 1 21 0 1543 160 86 12 chr6 10715885 10716141 -171699101 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr6 10716145 10716170 -171699072 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2167 115 3 3 chr6 10716574 10716879 -171698363 + AluSx SINE Alu 1 305 -7 2011 171 39 26 chr6 10717189 10717604 -171697638 - LOR1b LTR ERV1 -32 429 10 2120 80 11 0 chr6 10718929 10719205 -171696037 + AluSx SINE Alu 21 299 -13 267 98 0 0 chr6 10719205 10719240 -171696002 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2377 84 3 0 chr6 10719646 10719957 -171695285 + AluSp SINE Alu 1 312 -1 288 360 85 41 chr6 10720100 10720442 -171694800 + L3 LINE CR1 200 556 -1021 434 271 90 0 chr6 10721821 10721943 -171693299 - MIR SINE MIR -115 147 15 2056 105 20 3 chr6 10722481 10722776 -171692466 + AluSc SINE Alu 1 300 -9 826 180 74 0 chr6 10722845 10723034 -171692208 + Tigger3b DNA MER2_type 1 203 -1028 2755 135 98 25 chr6 10723234 10723782 -171691460 + Tigger3b DNA MER2_type 150 737 -494 1761 166 0 7 chr6 10723782 10724084 -171691158 + AluJo SINE Alu 1 300 -12 2159 72 21 7 chr6 10724185 10724475 -171690767 + AluSg1 SINE Alu 1 294 -15 220 111 44 0 chr6 10724505 10724550 -171690692 + (TA)n Simple_repeat Simple_repeat 1 47 0 1650 205 76 59 chr6 10724611 10724695 -171690547 - MLT1C LTR MaLR 0 467 386 1574 167 7 26 chr6 10724695 10724909 -171690333 + AluJo SINE Alu 12 220 -92 2053 100 3 0 chr6 10724909 10725198 -171690044 + AluSq SINE Alu 5 294 -19 1574 167 7 26 chr6 10725198 10725288 -171689954 + AluJo SINE Alu 220 310 -2 1650 205 76 59 chr6 10725288 10725662 -171689580 - MLT1C LTR MaLR -81 386 1 1847 110 55 31 chr6 10725965 10726257 -171688985 - AluSc SINE Alu -10 299 1 246 385 81 26 chr6 10727262 10727711 -171687531 - L2 LINE L2 -189 3083 2622 2003 74 41 0 chr6 10727791 10728093 -171687149 - AluY SINE Alu 0 313 1 224 311 25 33 chr6 10728119 10728160 -171687082 - MIR SINE MIR -66 196 156 438 20 0 0 chr6 10728160 10728211 -171687031 + (TG)n Simple_repeat Simple_repeat 2 52 0 224 311 25 33 chr6 10728211 10728291 -171686951 - MIR SINE MIR -106 156 76 249 33 0 0 chr6 10728662 10728692 -171686550 + (CA)n Simple_repeat Simple_repeat 2 31 0 2424 57 0 0 chr6 10730055 10730353 -171684889 - AluY SINE Alu -13 298 1 1835 125 18 0 chr6 10730412 10730718 -171684524 - AluSx SINE Alu 0 311 1 885 167 13 7 chr6 10730830 10730980 -171684262 - MER106B DNA MER1_type -908 151 1 183 156 0 0 chr6 10731160 10731192 -171684050 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 452 336 14 22 chr6 10732115 10732338 -171682904 + MIR SINE MIR 40 260 -2 2443 68 0 0 chr6 10732393 10732702 -171682540 + AluSg SINE Alu 1 309 -1 492 240 8 16 chr6 10733070 10733191 -171682051 + L2 LINE L2 3193 3312 -1 365 82 16 16 chr6 10733217 10733278 -171681964 - Alu SINE Alu 0 301 241 336 272 19 29 chr6 10733587 10733690 -171681552 - L1MC/D LINE L1 -1998 5810 5709 2311 98 9 0 chr6 10733690 10734008 -171681234 + LTR8 LTR ERV1 267 587 -104 35 0 0 0 chr6 10734008 10734043 -171681199 + AT_rich Low_complexity Low_complexity 1 35 0 286 274 113 9 chr6 10734215 10734321 -171680921 + L1ME LINE L1 5495 5611 -510 4284 183 58 25 chr6 10734941 10735774 -171679468 + MER21B LTR ERV1 1 860 -3 273 288 0 0 chr6 10736717 10736842 -171678400 + (TG)n Simple_repeat Simple_repeat 1 125 0 2111 122 0 3 chr6 10737155 10737467 -171677775 + AluSx SINE Alu 1 311 -1 1801 125 43 0 chr6 10737814 10738093 -171677149 - AluJo SINE Alu -21 291 1 2168 91 0 7 chr6 10738193 10738502 -171676740 - AluSg SINE Alu -3 307 1 1571 153 0 39 chr6 10738572 10738881 -171676361 + AluJo SINE Alu 12 309 0 1567 142 19 61 chr6 10738946 10739130 -171676112 - AluJo SINE Alu -15 297 130 2228 88 0 0 chr6 10739130 10739424 -171675818 + AluSc SINE Alu 2 295 -14 1567 142 19 61 chr6 10739424 10739549 -171675693 - AluJo SINE Alu -182 130 1 1779 142 28 0 chr6 10740381 10740669 -171674573 + AluJb SINE Alu 1 296 -16 394 241 23 0 chr6 10740681 10740768 -171674474 + L2 LINE L2 3128 3216 -97 308 276 7 97 chr6 10740833 10740934 -171674308 - MIR SINE MIR -12 250 161 1642 161 0 37 chr6 10740934 10741277 -171673965 + AluJo SINE Alu 1 332 0 308 276 7 97 chr6 10741277 10741317 -171673925 - MIR SINE MIR -101 161 119 1484 112 22 9 chr6 10741371 10741603 -171673639 + AluSg/x SINE Alu 69 303 -9 1126 196 222 73 chr6 10741710 10742134 -171673108 - MLT1D LTR MaLR 0 505 19 688 238 38 131 chr6 10742483 10742842 -171672400 + L1MC4 LINE L1 7354 7660 -382 5162 18 0 17 chr6 10742842 10743444 -171671798 - L1PA4 LINE L1 -3 6152 5561 688 238 38 131 chr6 10743444 10743558 -171671684 + L1MC4 LINE L1 7660 7783 -259 286 243 0 0 chr6 10744602 10744676 -171670566 + L1MC4 LINE L1 7969 8042 0 1886 118 0 57 chr6 10744918 10745233 -171670009 - AluSq SINE Alu -16 297 1 334 264 161 7 chr6 10745335 10745490 -171669752 - L2 LINE L2 0 3313 3135 624 239 23 0 chr6 10745593 10745723 -171669519 + AluJo SINE Alu 1 133 -169 904 71 11 44 chr6 10745723 10745858 -171669384 + (GGAA)n Simple_repeat Simple_repeat 1 307 0 904 71 11 44 chr6 10745858 10746041 -171669201 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 1044 148 0 17 chr6 10746129 10746305 -171668937 + AluJo SINE Alu 129 301 -11 278 255 49 59 chr6 10746385 10746487 -171668755 - L2 LINE L2 -1087 2227 2127 1176 205 34 0 chr6 10746488 10746727 -171668515 - MLT1A1 LTR MaLR -3 362 116 1396 270 109 75 chr6 10746727 10746971 -171668271 - L2 LINE L2 -1214 2100 1866 1801 135 14 7 chr6 10746971 10747260 -171667982 + AluJb SINE Alu 2 292 -20 1784 117 67 3 chr6 10747264 10747547 -171667695 + AluSg SINE Alu 3 303 -7 1396 270 109 75 chr6 10747547 10747968 -171667274 - L2 LINE L2 -1450 1864 1407 374 65 0 0 chr6 10747970 10748016 -171667226 + MLT1B LTR MaLR 299 344 -46 2352 238 176 16 chr6 10748160 10749068 -171666174 + L2 LINE L2 333 1385 -1929 1912 113 11 4 chr6 10749070 10749378 -171665864 + AluSx SINE Alu 7 316 0 362 246 94 94 chr6 10750353 10750409 -171664833 + LTR50 LTR ERVL 480 535 -260 1489 216 56 50 chr6 10750409 10750758 -171664484 - MLT1C LTR MaLR 0 467 113 2262 67 0 22 chr6 10750758 10751071 -171664171 - AluSc SINE Alu -3 306 1 1489 216 56 50 chr6 10751071 10751183 -171664059 - MLT1C LTR MaLR -354 113 3 362 246 94 94 chr6 10751183 10751435 -171663807 + LTR50 LTR ERVL 534 788 -7 1897 122 4 0 chr6 10751488 10751766 -171663476 + AluSx SINE Alu 21 299 -13 747 205 43 43 chr6 10751784 10751859 -171663383 + FAM SINE Alu 11 85 -236 2262 140 69 15 chr6 10751859 10752214 -171663028 + MSTA LTR MaLR 1 382 -46 186 43 0 0 chr6 10752214 10752237 -171663005 + (TA)n Simple_repeat Simple_repeat 2 24 0 2262 140 69 15 chr6 10752237 10752287 -171662955 + MSTA LTR MaLR 382 428 0 747 205 43 43 chr6 10752287 10752372 -171662870 + FAM SINE Alu 84 171 -14 1542 216 214 55 chr6 10752591 10752659 -171662583 - MLT1E1 LTR MaLR 0 654 598 1974 122 14 0 chr6 10752659 10752946 -171662296 + AluSx SINE Alu 5 295 -17 1542 216 214 55 chr6 10752946 10753441 -171661801 - MLT1E1 LTR MaLR -56 598 1 545 353 40 15 chr6 10753775 10754047 -171661195 + ERVL LTR ERVL 775 1053 -4711 268 289 103 0 chr6 10754377 10754474 -171660768 - LTR40a LTR ERVL -6 513 407 360 304 47 28 chr6 10754939 10755153 -171660089 - MERVL LTR ERVL -458 5027 4810 644 362 8 0 chr6 10755430 10755687 -171659555 - MERVL LTR ERVL -1047 4438 4180 255 93 0 0 chr6 10755996 10756039 -171659203 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2486 174 6 222 chr6 10756237 10756691 -171658551 + L1M3 LINE L1 4363 4914 -1232 627 80 50 50 chr6 10756691 10756791 -171658451 + AluSg/x SINE Alu 189 288 -22 2486 174 6 222 chr6 10756791 10757261 -171657981 + L1M3 LINE L1 4914 5074 -1072 1695 190 0 3 chr6 10757261 10757556 -171657686 - AluJb SINE Alu -18 294 1 2486 174 6 222 chr6 10757556 10757770 -171657472 + L1M3 LINE L1 5074 5333 -813 647 163 8 47 chr6 10757770 10757870 -171657372 + FLAM_A SINE Alu 5 100 -211 2282 113 80 0 chr6 10757870 10758207 -171657035 + THE1B LTR MaLR 1 364 0 647 163 8 47 chr6 10758207 10758235 -171657007 + FLAM_A SINE Alu 100 128 -183 776 129 8 0 chr6 10758235 10758359 -171656883 + L1M3 LINE L1 5326 5450 -730 2380 286 48 11 chr6 10758879 10759609 -171655633 + ERVL LTR ERVL 287 1043 -3953 1325 220 104 31 chr6 10759666 10760080 -171655162 + MLT1C LTR MaLR 24 467 0 1752 295 48 28 chr6 10760080 10761210 -171654032 + ERVL LTR ERVL 1057 2273 -2723 598 285 69 97 chr6 10761295 10761368 -171653874 + ERVL LTR ERVL 2288 2362 -2634 1972 119 7 7 chr6 10761368 10761662 -171653580 - AluSx SINE Alu -18 294 1 598 285 69 97 chr6 10761662 10762040 -171653202 + ERVL LTR ERVL 2362 2726 -2270 1016 112 0 20 chr6 10762689 10762841 -171652401 + L1PA8 LINE L1 6021 6169 -3 243 156 67 0 chr6 10762846 10762891 -171652351 + MER58 DNA MER1_type 2373 2420 0 2173 94 0 10 chr6 10763042 10763341 -171651901 + AluSx SINE Alu 1 296 -16 1551 136 97 13 chr6 10763341 10763650 -171651592 + MER46B DNA MER2_type 27 236 0 5672 94 36 17 chr6 10763674 10764489 -171650753 - L1PA11 LINE L1 -2 6172 5343 2093 103 3 7 chr6 10764538 10764839 -171650403 - AluY SINE Alu -11 300 1 185 307 176 39 chr6 10764892 10765045 -171650197 + MIR SINE MIR 28 201 -61 338 326 39 8 chr6 10765414 10765543 -171649699 + AluJ SINE Alu 11 143 -159 5402 191 69 76 chr6 10765558 10767139 -171648103 - pTR5 LTR ERV1 -156 2173 31 743 194 84 19 chr6 10767140 10767295 -171647947 + AluJ SINE Alu 143 307 -5 1885 102 16 60 chr6 10767858 10768172 -171647070 + AluSx SINE Alu 5 304 -8 187 264 125 28 chr6 10768194 10768266 -171646976 + MIR SINE MIR 73 151 -111 810 174 12 12 chr6 10768267 10768428 -171646814 - FRAM SINE Alu -15 161 1 2568 214 104 6 chr6 10768440 10769112 -171646130 - L1MD2 LINE L1 -1 6358 5621 2114 99 17 3 chr6 10769614 10769907 -171645335 - AluSx SINE Alu -14 298 2 996 202 32 40 chr6 10769928 10770175 -171645067 + MLT2B1 LTR ERVL 2 246 -274 559 221 140 0 chr6 10770186 10770322 -171644920 - AluJo SINE Alu -41 271 117 1531 146 59 7 chr6 10770322 10770610 -171644632 + AluSq SINE Alu 1 303 -10 4227 152 93 56 chr6 10770709 10772156 -171643086 - pTR5 LTR ERV1 0 2438 743 281 198 23 23 chr6 10772542 10772628 -171642614 + (TA)n Simple_repeat Simple_repeat 1 86 0 200 200 0 0 chr6 10772744 10772789 -171642453 + (ATG)n Simple_repeat Simple_repeat 3 47 0 271 307 99 61 chr6 10772796 10772874 -171642368 - MIR SINE MIR -41 221 147 2304 144 15 15 chr6 10772874 10773264 -171641978 - MLT1B LTR MaLR 0 390 1 271 307 99 61 chr6 10773264 10773397 -171641845 - MIR SINE MIR -115 147 2 1915 141 3 95 chr6 10773912 10774281 -171640961 + MER1B DNA MER1_type 2 336 -1 2231 97 0 0 chr6 10774689 10774987 -171640255 - AluSx SINE Alu -14 298 1 321 292 102 15 chr6 10775209 10775341 -171639901 + MIR SINE MIR 2 143 -69 1474 200 143 83 chr6 10775345 10776096 -171639146 + pTR5 LTR ERV1 744 2050 -388 683 210 127 63 chr6 10776342 10776662 -171638580 + LTR12 LTR ERV1 236 690 -24 766 192 58 0 chr6 10776663 10776819 -171638423 - AluSq SINE Alu -15 298 134 1312 199 15 7 chr6 10776835 10777107 -171638135 - AluSq SINE Alu -39 274 1 576 202 57 16 chr6 10777109 10777233 -171638009 - AluJo/FLAM SINE Alu -171 131 3 1707 127 21 25 chr6 10777594 10777877 -171637365 + AluSx SINE Alu 1 282 -30 182 125 0 50 chr6 10779190 10779230 -171636012 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 2155 102 3 0 chr6 10779388 10779682 -171635560 - AluSq SINE Alu -18 295 1 2916 212 25 25 chr6 10780435 10781119 -171634123 - L1MD3 LINE L1 0 7995 7312 406 319 28 7 chr6 10781370 10781514 -171633728 + MIR SINE MIR 112 258 -4 2050 118 10 0 chr6 10781543 10781847 -171633395 + AluSg SINE Alu 1 307 -3 901 253 42 4 chr6 10781867 10782104 -171633138 + MIR SINE MIR 17 262 0 2311 94 0 0 chr6 10782224 10782533 -171632709 - AluY SINE Alu -2 309 1 1959 127 0 10 chr6 10782571 10782871 -171632371 - AluSx SINE Alu -15 297 1 1282 247 49 45 chr6 10782950 10783373 -171631869 - L1ME2 LINE L1 -6 6227 5800 1435 141 130 0 chr6 10783373 10783635 -171631607 - AluSg1 SINE Alu -13 296 1 1282 247 49 45 chr6 10783635 10783725 -171631517 - L1ME2 LINE L1 -433 5800 5712 784 244 39 19 chr6 10783726 10783931 -171631311 - MER82 DNA MER2_type -1 652 444 2118 92 7 16 chr6 10783958 10784264 -171630978 + AluSx SINE Alu 1 303 -9 254 182 36 0 chr6 10784379 10784434 -171630808 + L1M4 LINE L1 2774 2830 -3316 383 237 32 0 chr6 10784564 10784657 -171630585 - MER82 DNA MER2_type -557 96 1 1032 271 37 9 chr6 10784657 10784978 -171630264 - L1ME2 LINE L1 -525 5710 5381 520 54 68 0 chr6 10785020 10785094 -171630148 + L1PA11 LINE L1 6095 6173 -1 1499 244 13 18 chr6 10785096 10785546 -171629696 - L1ME2 LINE L1 -2925 3290 2843 696 129 54 82 chr6 10785549 10785696 -171629546 - MSTB2 LTR MaLR -55 402 260 434 203 16 47 chr6 10785725 10785796 -171629446 - L1ME2 LINE L1 -3388 2827 2760 2066 122 3 0 chr6 10785796 10786100 -171629142 - AluSx SINE Alu -7 305 1 434 203 16 47 chr6 10786100 10786156 -171629086 - L1ME2 LINE L1 -3455 2760 2704 1710 262 27 10 chr6 10786208 10786693 -171628549 - L1ME2 LINE L1 -5780 616 124 1897 151 0 7 chr6 10787379 10787678 -171627564 + AluJb SINE Alu 1 297 -15 864 149 6 43 chr6 10787771 10787932 -171627310 + AluJb SINE Alu 143 297 -15 326 298 48 0 chr6 10787943 10788047 -171627195 + MER103 DNA DNA 13 121 -45 406 227 9 18 chr6 10788696 10788806 -171626436 - L1ME4a LINE L1 -67 6054 5946 2133 111 0 0 chr6 10788839 10789136 -171626106 + AluSx SINE Alu 1 297 -15 655 216 0 8 chr6 10789240 10789365 -171625877 + FLAM_C SINE Alu 2 125 -18 2287 105 0 0 chr6 10789816 10790120 -171625122 + AluSx SINE Alu 1 304 -8 221 56 0 28 chr6 10790120 10790156 -171625086 + (TA)n Simple_repeat Simple_repeat 1 35 0 1000 212 37 8 chr6 10790319 10790560 -171624682 + L1MB7 LINE L1 5928 6175 -9 346 326 17 65 chr6 10790584 10790825 -171624417 - MIR SINE MIR -24 238 12 186 179 0 0 chr6 10790908 10790936 -171624306 - L2 LINE L2 -21 3251 3224 977 184 0 22 chr6 10790949 10791128 -171624114 - FAM SINE Alu 0 175 1 1179 161 5 0 chr6 10791210 10791403 -171623839 + MER20 DNA MER1_type 26 219 0 1567 168 20 7 chr6 10791581 10791878 -171623364 + L1MB2 LINE L1 5864 6164 -7 2138 108 0 7 chr6 10791893 10792200 -171623042 + AluSx SINE Alu 5 309 -3 307 53 0 0 chr6 10792433 10792471 -171622771 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 269 285 122 16 chr6 10792987 10793110 -171622132 + MIR3 SINE MIR 56 191 -17 27 0 0 0 chr6 10793143 10793170 -171622072 + AT_rich Low_complexity Low_complexity 1 27 0 2366 137 6 3 chr6 10793212 10793571 -171621671 - MER46B DNA MER2_type 0 236 2 2063 130 0 0 chr6 10793654 10793953 -171621289 + AluSx SINE Alu 1 299 -13 692 308 71 5 chr6 10794650 10794874 -171620368 - MIR SINE MIR -3 259 21 1576 209 30 6 chr6 10795022 10795352 -171619890 - MER58B DNA MER1_type -3 338 1 2369 153 37 19 chr6 10795453 10795884 -171619358 + L1MA6 LINE L1 5862 6300 0 286 333 116 21 chr6 10795918 10796107 -171619135 - L2 LINE L2 -113 3159 2953 780 143 42 0 chr6 10796139 10796258 -171618984 + FLAM_C SINE Alu 2 125 -18 193 0 94 0 chr6 10796263 10796295 -171618947 + T-rich Low_complexity Low_complexity 1 35 0 2096 73 0 4 chr6 10796409 10796684 -171618558 - AluY SINE Alu -20 291 18 362 266 32 63 chr6 10796766 10796850 -171618392 - L2 LINE L2 0 3313 3235 2131 100 3 3 chr6 10796850 10797150 -171618092 + AluSq SINE Alu 1 300 -13 362 266 32 63 chr6 10797150 10797223 -171618019 - L2 LINE L2 -78 3235 3161 25 0 0 0 chr6 10801388 10801413 -171613829 + GC_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr6 10802015 10802035 -171613207 + (T)n Simple_repeat Simple_repeat 1 20 0 2048 94 4 0 chr6 10809405 10809682 -171605560 + AluSg SINE Alu 1 278 -32 24 67 0 0 chr6 10811593 10811638 -171603604 + AT_rich Low_complexity Low_complexity 1 45 0 33 25 0 0 chr6 10813226 10813266 -171601976 + AT_rich Low_complexity Low_complexity 1 40 0 200 35 35 0 chr6 10813758 10813787 -171601455 + (GA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr6 10813986 10814034 -171601208 + AT_rich Low_complexity Low_complexity 1 48 0 24 63 0 16 chr6 10814537 10814587 -171600655 + AT_rich Low_complexity Low_complexity 1 51 -11 190 28 28 56 chr6 10814587 10814623 -171600619 + (TTG)n Simple_repeat Simple_repeat 2 36 0 24 63 0 16 chr6 10814623 10814635 -171600607 + AT_rich Low_complexity Low_complexity 51 62 0 294 143 0 0 chr6 10814817 10814866 -171600376 + (CAG)n Simple_repeat Simple_repeat 3 51 0 225 0 0 0 chr6 10816438 10816463 -171598779 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr6 10816462 10816487 -171598755 + (TG)n Simple_repeat Simple_repeat 2 26 0 34 24 0 0 chr6 10821007 10821048 -171594194 + GC_rich Low_complexity Low_complexity 1 41 0 222 118 0 0 chr6 10824028 10824062 -171591180 + (T)n Simple_repeat Simple_repeat 1 34 0 210 236 0 0 chr6 10828720 10828775 -171586467 + (CGAG)n Simple_repeat Simple_repeat 2 56 0 233 224 0 17 chr6 10828843 10828901 -171586341 + GA-rich Low_complexity Low_complexity 2 58 0 400 154 11 11 chr6 10828960 10829051 -171586191 + GA-rich Low_complexity Low_complexity 1 91 0 271 184 0 0 chr6 10829067 10829116 -171586126 + G-rich Low_complexity Low_complexity 5 53 0 255 31 0 0 chr6 10831004 10831036 -171584206 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 762 130 0 0 chr6 10831630 10831761 -171583481 + (GGA)n Simple_repeat Simple_repeat 3 133 0 23 0 0 0 chr6 10835727 10835750 -171579492 + GC_rich Low_complexity Low_complexity 1 23 0 240 188 0 0 chr6 10836750 10836798 -171578444 + (CA)n Simple_repeat Simple_repeat 2 49 0 438 301 133 35 chr6 10838197 10838400 -171576842 + MIR SINE MIR 31 253 -9 387 0 0 0 chr6 10840138 10840181 -171575061 + (TG)n Simple_repeat Simple_repeat 2 44 0 419 301 18 0 chr6 10841568 10841681 -171573561 + MER5B DNA MER1_type 1 115 -63 388 168 0 62 chr6 10845510 10845623 -171569619 + L1PA11 LINE L1 6068 6173 -1 180 306 16 16 chr6 10846618 10846680 -171568562 + L3 LINE CR1 1513 1574 -3 2014 126 49 0 chr6 10847012 10847297 -171567945 - AluSx SINE Alu -13 299 1 396 256 0 0 chr6 10847361 10847447 -171567795 + MLT1L LTR MaLR 69 154 -461 481 310 12 23 chr6 10848042 10848213 -171567029 + MIR3 SINE MIR 25 193 -15 180 205 0 51 chr6 10848179 10848218 -171567024 + L3 LINE CR1 1535 1571 -6 * 1686 177 27 17 chr6 10848385 10848685 -171566557 - AluJo SINE Alu -9 303 1 2420 85 0 3 chr6 10848936 10849241 -171566001 - AluSq SINE Alu -8 305 2 430 242 0 0 chr6 10849303 10849402 -171565840 - FLAM_C SINE Alu 0 143 45 750 279 135 53 chr6 10849734 10850212 -171565030 - L2 LINE L2 0 3313 2757 2446 81 0 0 chr6 10850212 10850507 -171564735 + AluSq SINE Alu 1 295 -18 750 279 135 53 chr6 10850507 10850661 -171564581 - L2 LINE L2 -556 2757 2617 776 266 76 10 chr6 10850665 10850955 -171564287 - L2 LINE L2 -1109 2205 1897 209 287 87 17 chr6 10851039 10851143 -171564099 + MIR SINE MIR 92 206 -56 1480 186 54 61 chr6 10851143 10851535 -171563707 - MLT1B LTR MaLR -1 389 1 2406 68 0 0 chr6 10851855 10852164 -171563078 - AluSg SINE Alu 0 309 1 271 75 0 0 chr6 10852690 10852730 -171562512 - Alu SINE Alu -4 297 258 1323 51 0 6 chr6 10852730 10852886 -171562356 - AluY SINE Alu -156 155 1 949 291 75 0 chr6 10852888 10853259 -171561983 + L1MC4a LINE L1 5514 5912 -1896 851 176 0 0 chr6 10853425 10853556 -171561686 - FLAM_C SINE Alu -2 131 1 1944 142 0 10 chr6 10853569 10853895 -171561347 - AluSx SINE Alu 0 323 1 602 242 52 41 chr6 10853898 10854340 -171560902 - L1M4 LINE L1 -2848 3298 2852 230 163 0 0 chr6 10854365 10854408 -171560834 - L1MA9 LINE L1 -10 6302 6260 586 227 67 0 chr6 10854510 10854660 -171560582 - MLT1J LTR MaLR -113 398 239 266 283 11 33 chr6 10854686 10854778 -171560464 - MLT1J LTR MaLR -338 173 84 1589 160 93 4 chr6 10854827 10855096 -171560146 + AluJb SINE Alu 4 296 -16 660 136 0 97 chr6 10855487 10855641 -171559601 - L1MA9 LINE L1 -37 6275 6137 2316 113 0 0 chr6 10855642 10855943 -171559299 - AluSx SINE Alu -11 301 1 2386 106 0 0 chr6 10856565 10856867 -171558375 + AluSx SINE Alu 1 302 -10 184 338 26 19 chr6 10857179 10857333 -171557909 - L2 LINE L2 -1635 1679 1525 2337 89 21 0 chr6 10857543 10857834 -171557408 + AluSc SINE Alu 2 298 -11 214 282 90 13 chr6 10858212 10858290 -171556952 - L2 LINE L2 -1 3271 3188 995 191 0 15 chr6 10858300 10858504 -171556738 + AluSq SINE Alu 1 201 -112 2275 99 3 0 chr6 10859508 10859792 -171555450 + AluSq SINE Alu 1 285 -28 22 0 0 0 chr6 10859794 10859816 -171555426 + AT_rich Low_complexity Low_complexity 1 22 0 182 315 0 0 chr6 10860951 10861005 -171554237 + MIR SINE MIR 86 139 -123 201 167 0 0 chr6 10861063 10861099 -171554143 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2514 65 7 10 chr6 10861157 10861464 -171553778 + AluY SINE Alu 1 306 -5 1597 173 83 4 chr6 10861594 10861860 -171553382 - AluJb SINE Alu -15 297 11 32 57 0 0 chr6 10861932 10861985 -171553257 + AT_rich Low_complexity Low_complexity 1 53 0 2265 114 0 13 chr6 10862029 10862337 -171552905 + AluSx SINE Alu 2 305 -7 396 194 37 19 chr6 10862363 10862471 -171552771 - Charlie2a DNA MER1_type 0 2862 2753 659 167 107 12 chr6 10862476 10862644 -171552598 - Charlie2a DNA MER1_type -1851 1011 828 270 220 0 0 chr6 10862670 10862729 -171552513 - Charlie2a DNA MER1_type -2732 130 72 192 77 0 0 chr6 10862733 10862759 -171552483 + (A)n Simple_repeat Simple_repeat 1 26 0 1599 131 100 41 chr6 10862998 10863242 -171552000 - MER44D DNA MER2_type -1882 609 381 2232 96 14 3 chr6 10863242 10863534 -171551708 - AluSx SINE Alu -17 295 1 1599 131 100 41 chr6 10863534 10863609 -171551633 - MER44D DNA MER2_type -2110 381 1 246 156 0 0 chr6 10863772 10863817 -171551425 - Charlie2a DNA MER1_type -2650 132 88 2153 170 115 3 chr6 10864318 10864701 -171550541 + MSTB LTR MaLR 1 426 0 183 42 0 0 chr6 10864707 10864731 -171550511 + (CA)n Simple_repeat Simple_repeat 2 25 0 2313 131 0 0 chr6 10864838 10865144 -171550098 - AluSx SINE Alu -6 306 1 272 239 60 0 chr6 10865718 10865785 -171549457 + MIR SINE MIR 78 148 -114 230 148 74 19 chr6 10865979 10866033 -171549209 + MLT1L LTR MaLR 507 563 -52 2255 96 4 0 chr6 10866156 10866461 -171548781 - AluSp SINE Alu 0 306 1 721 320 107 35 chr6 10866663 10866938 -171548304 - L2 LINE L2 -6 3266 2949 957 32 113 0 chr6 10866938 10867062 -171548180 + MER85 DNA T2_type 1 138 -1 721 320 107 35 chr6 10867062 10867243 -171547999 - L2 LINE L2 -323 2949 2782 2483 103 0 0 chr6 10867369 10867681 -171547561 + AluSx SINE Alu 1 312 0 2289 115 6 10 chr6 10868196 10868508 -171546734 - AluSq SINE Alu -2 311 1 342 291 64 55 chr6 10868587 10869044 -171546198 + L1MEd LINE L1 1094 1539 -4590 2404 91 7 0 chr6 10869044 10869353 -171545889 + AluY SINE Alu 1 311 0 342 291 64 55 chr6 10869353 10869444 -171545798 + L1MEd LINE L1 1539 1628 -4501 1132 252 91 11 chr6 10869687 10870040 -171545202 - L1MC4a LINE L1 -1017 6791 6411 2305 111 0 0 chr6 10870044 10870341 -171544901 + AluSx SINE Alu 1 297 -15 402 240 32 19 chr6 10870371 10870525 -171544717 - L1MEd LINE L1 -4974 1145 990 327 254 167 9 chr6 10870784 10870898 -171544344 - L1MEd LINE L1 -5426 693 562 233 176 0 39 chr6 10871200 10871251 -171543991 + CT-rich Low_complexity Low_complexity 2 50 0 438 188 83 56 chr6 10871969 10872113 -171543129 + L1MA7 LINE L1 6140 6287 -4 2062 131 3 3 chr6 10872176 10872466 -171542776 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 10872474 10872608 -171542634 - LTR8 LTR ERV1 -544 147 12 2190 108 0 0 chr6 10872612 10872909 -171542333 + AluY SINE Alu 1 297 -14 275 234 66 66 chr6 10872978 10873205 -171542037 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 10873261 10873590 -171541652 + MER58B DNA MER1_type 1 340 -1 2272 87 10 7 chr6 10873797 10874095 -171541147 - AluSc SINE Alu -10 299 1 2438 88 0 0 chr6 10874097 10874403 -171540839 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 10874667 10874869 -171540373 + L2 LINE L2 3009 3201 -71 3171 126 50 116 chr6 10874871 10875607 -171539635 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 10875613 10875708 -171539534 + LTR12 LTR ERV1 620 714 0 2419 73 23 0 chr6 10876431 10876731 -171538511 - AluSp SINE Alu -6 307 1 270 179 36 0 chr6 10876798 10876854 -171538388 - MLT1J LTR MaLR -344 167 110 487 268 83 62 chr6 10878238 10878591 -171536651 - MLT1L LTR MaLR -83 532 95 2231 117 0 0 chr6 10879730 10880028 -171535214 + AluSx SINE Alu 1 298 -14 2043 125 3 37 chr6 10882242 10882563 -171532679 - AluSg SINE Alu 0 310 1 2181 97 3 23 chr6 10882805 10883114 -171532128 - AluSq SINE Alu -10 303 1 1859 146 42 3 chr6 10884064 10884351 -171530891 + AluSx SINE Alu 1 298 -14 250 231 62 15 chr6 10884629 10884694 -171530548 - L2 LINE L2 -4 3309 3242 214 154 19 58 chr6 10885546 10885598 -171529644 + MIR SINE MIR 81 130 -78 812 150 8 8 chr6 10885753 10885886 -171529356 + FLAM_A SINE Alu 1 133 0 2080 131 24 0 chr6 10885965 10886263 -171528979 - AluSx SINE Alu -7 305 1 2348 90 3 10 chr6 10886277 10886589 -171528653 - AluSp SINE Alu 0 313 4 2226 108 13 3 chr6 10886596 10886901 -171528341 - AluSx SINE Alu -4 308 1 322 235 67 40 chr6 10886932 10887081 -171528161 + L1ME4a LINE L1 5968 6120 -1 2113 102 14 10 chr6 10887804 10888099 -171527143 + AluSx SINE Alu 1 296 -16 324 226 157 57 chr6 10888132 10888291 -171526951 + L1ME LINE L1 5525 5699 -422 1363 158 11 46 chr6 10888359 10888390 -171526852 + AluSp SINE Alu 23 54 -259 2365 68 3 3 chr6 10888390 10888683 -171526559 + AluY SINE Alu 1 293 -18 1363 158 11 46 chr6 10888683 10888936 -171526306 + AluSp SINE Alu 54 297 -16 706 251 96 9 chr6 10890070 10890289 -171524953 - MIR SINE MIR -6 256 19 1454 183 29 18 chr6 10892460 10892770 -171522472 + AluJo SINE Alu 1 313 0 287 188 26 145 chr6 10893238 10893269 -171521973 - MIR SINE MIR 0 262 229 2060 128 0 46 chr6 10893269 10893596 -171521646 + AluJb SINE Alu 1 312 0 360 0 0 0 chr6 10893600 10893640 -171521602 + (TA)n Simple_repeat Simple_repeat 2 41 0 287 188 26 145 chr6 10893640 10893720 -171521522 - MIR SINE MIR -36 226 160 1821 134 144 0 chr6 10894141 10894440 -171520802 + Ricksha DNA DNA 9 350 -2896 666 267 61 58 chr6 10894508 10894575 -171520667 - L2 LINE L2 -508 2806 2741 2400 75 0 3 chr6 10894575 10894868 -171520374 - AluY SINE Alu -19 292 1 2272 91 14 3 chr6 10894868 10895165 -171520077 - AluSq SINE Alu -13 300 1 666 267 61 58 chr6 10895165 10895373 -171519869 - L2 LINE L2 -572 2742 2529 687 206 24 41 chr6 10895381 10895551 -171519691 + LTR9 LTR ERV1 446 612 0 722 157 64 0 chr6 10895576 10895722 -171519520 + HUERS-P3b LTR ERV1 3616 4588 -1242 * 1108 136 12 0 chr6 10895719 10895881 -171519361 + HUERS-P3b LTR ERV1 5894 6057 -1361 1094 147 28 0 chr6 10895880 10896048 -171519194 + HUERS-P3b LTR ERV1 3308 6617 -801 * 576 324 138 20 chr6 10896056 10896365 -171518877 - L2 LINE L2 -783 2531 2260 1127 184 29 19 chr6 10896365 10896435 -171518807 - MER3 DNA MER1_type 0 209 141 1586 161 97 7 chr6 10896435 10896714 -171518528 + AluSx SINE Alu 1 304 -8 1127 184 29 19 chr6 10896714 10896850 -171518392 - MER3 DNA MER1_type -68 141 1 576 324 138 20 chr6 10896850 10897194 -171518048 - L2 LINE L2 -1054 2260 1801 563 129 0 0 chr6 10897313 10897398 -171517844 + MER53 DNA DNA 1 85 -104 7481 136 26 11 chr6 10897401 10897687 -171517555 - Tigger3b DNA MER2_type -1797 1231 951 2330 117 0 0 chr6 10897687 10897996 -171517246 + AluSp SINE Alu 1 309 -4 7481 136 26 11 chr6 10897996 10898241 -171517001 - Tigger3b DNA MER2_type -2077 951 711 246 32 0 0 chr6 10898241 10898272 -171516970 + (TA)n Simple_repeat Simple_repeat 1 31 0 3864 68 4 19 chr6 10898273 10898789 -171516453 - L1PA8 LINE L1 -13 6159 5652 7481 136 26 11 chr6 10898789 10899464 -171515778 - Tigger3b DNA MER2_type -2316 712 4 358 161 138 0 chr6 10899467 10899554 -171515688 + MER53 DNA DNA 87 185 -4 21 0 0 0 chr6 10899680 10899701 -171515541 + AT_rich Low_complexity Low_complexity 1 21 0 706 207 18 18 chr6 10900783 10900947 -171514295 + FAM SINE Alu 1 164 -11 273 267 139 10 chr6 10901605 10901706 -171513536 - L2 LINE L2 -7 3306 3193 2381 93 0 10 chr6 10901720 10902030 -171513212 - AluSx SINE Alu -5 307 1 2218 97 24 0 chr6 10902039 10902329 -171512913 - AluY SINE Alu -14 297 1 21 36 0 0 chr6 10902655 10902683 -171512559 + AT_rich Low_complexity Low_complexity 1 28 0 4465 182 32 23 chr6 10903004 10903076 -171512166 + L1MC3 LINE L1 6806 6876 -909 2539 176 42 33 chr6 10903076 10903180 -171512062 - MER66B LTR ERV1 0 486 384 2123 111 10 0 chr6 10903180 10903469 -171511773 - AluSx SINE Alu -20 292 1 2539 176 42 33 chr6 10903469 10903846 -171511396 - MER66B LTR ERV1 -102 384 1 4465 182 32 23 chr6 10903846 10904635 -171510607 + L1MC3 LINE L1 6876 7679 -106 2457 129 67 5 chr6 10904635 10905038 -171510204 + MSTA LTR MaLR 1 428 0 4465 182 32 23 chr6 10905038 10905136 -171510106 + L1MC3 LINE L1 7679 7775 -10 2225 114 0 3 chr6 10905136 10905442 -171509800 + AluSq SINE Alu 1 305 -8 1542 159 3 28 chr6 10905451 10905741 -171509501 + L1MA3 LINE L1 5798 6080 -225 1354 207 45 25 chr6 10905741 10906054 -171509188 - MLT2C2 LTR ERVL -39 481 120 2199 101 13 16 chr6 10906776 10907084 -171508158 - AluSp SINE Alu -6 307 1 2359 104 0 0 chr6 10907100 10907407 -171507835 - AluSc SINE Alu -2 307 1 332 117 6 17 chr6 10907655 10907697 -171507545 - MLT2C1 LTR ERVL -5 657 616 438 20 0 0 chr6 10907697 10907748 -171507494 + (TG)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 10907748 10907776 -171507466 - MLT2C1 LTR ERVL -46 616 474 2140 164 25 3 chr6 10907861 10908213 -171507029 - MLT2C1 LTR ERVL -40 480 1 704 323 48 20 chr6 10908241 10908594 -171506648 + L2 LINE L2 2947 3309 -4 485 327 108 35 chr6 10908612 10909010 -171506232 - L3 LINE CR1 -156 1421 995 2089 122 20 10 chr6 10909011 10909178 -171506064 - AluSq SINE Alu -7 306 133 2267 81 42 0 chr6 10909178 10909463 -171505779 - AluSg1 SINE Alu -12 297 1 2089 122 20 10 chr6 10909463 10909598 -171505644 - AluSq SINE Alu -180 133 1 269 209 0 47 chr6 10909729 10909877 -171505365 + G-rich Low_complexity Low_complexity 3 143 0 1287 139 23 59 chr6 10909877 10910168 -171505074 - MER52C LTR ERV1 -772 506 91 710 221 27 72 chr6 10910168 10910390 -171504852 - L2 LINE L2 -895 2419 2208 4805 43 33 41 chr6 10911024 10912077 -171503165 - MER11A LTR ERVK 0 1266 1 1072 277 28 52 chr6 10912247 10912393 -171502849 + L1ME LINE L1 4 152 -5918 1837 114 103 4 chr6 10912393 10912664 -171502578 + AluSx SINE Alu 1 298 -14 1072 277 28 52 chr6 10912664 10912943 -171502299 + L1ME LINE L1 152 419 -5651 783 253 42 35 chr6 10913210 10913661 -171501581 + L1ME LINE L1 531 984 -5086 2315 84 0 29 chr6 10913661 10913969 -171501273 + AluSc SINE Alu 1 299 -10 24 32 0 0 chr6 10914064 10914095 -171501147 + AT_rich Low_complexity Low_complexity 1 31 0 2338 102 3 0 chr6 10914925 10915228 -171500014 + AluSp SINE Alu 1 304 -9 2667 130 28 35 chr6 10915367 10915464 -171499778 - L1MB1 LINE L1 -153 6036 5940 1959 143 0 3 chr6 10915464 10915751 -171499491 - AluJb SINE Alu -16 296 11 2667 130 28 35 chr6 10915751 10916085 -171499157 - L1MB1 LINE L1 -249 5940 5606 2364 87 0 19 chr6 10916085 10916397 -171498845 - AluSx SINE Alu -4 308 3 2667 130 28 35 chr6 10916397 10916425 -171498817 - L1MB1 LINE L1 -583 5606 5579 1453 143 4 39 chr6 10916427 10916706 -171498536 + L1MC3 LINE L1 7514 7782 -3 1931 108 73 14 chr6 10916927 10917214 -171498028 + AluSx SINE Alu 1 304 -8 2340 105 3 6 chr6 10917214 10917528 -171497714 + AluSq SINE Alu 1 313 0 215 268 24 37 chr6 10918263 10918345 -171496897 + L3 LINE CR1 1230 1310 -267 2516 83 0 0 chr6 10918360 10918662 -171496580 - AluSx SINE Alu -10 302 1 719 285 88 53 chr6 10918669 10919044 -171496198 - MLT1K LTR MaLR -16 572 185 2164 128 0 7 chr6 10919077 10919381 -171495861 + AluSx SINE Alu 1 302 -10 308 276 89 8 chr6 10919463 10919586 -171495656 + L3 LINE CR1 1336 1468 -109 249 257 22 44 chr6 10919665 10919801 -171495441 + L2 LINE L2 2553 2685 -629 788 281 106 13 chr6 10919816 10920118 -171495124 - L2 LINE L2 0 3313 2984 225 83 0 28 chr6 10920153 10920189 -171495053 - L1MA8 LINE L1 -475 5816 5782 2691 135 15 36 chr6 10920190 10920271 -171494971 + L1MA8 LINE L1 5827 5908 -383 2087 136 0 19 chr6 10920271 10920579 -171494663 + AluSx SINE Alu 1 302 -10 2691 135 15 36 chr6 10920579 10920970 -171494272 + L1MA8 LINE L1 5908 6289 -2 213 167 0 0 chr6 10920973 10921027 -171494215 + T-rich Low_complexity Low_complexity 1 54 0 257 326 0 0 chr6 10921046 10921132 -171494110 - L1MC4 LINE L1 -1005 7037 6952 2187 123 0 19 chr6 10921248 10921556 -171493686 - AluSq SINE Alu -11 302 1 454 287 60 64 chr6 10921635 10922092 -171493150 + L1MEd LINE L1 1094 1471 -4658 2342 87 7 7 chr6 10922092 10922401 -171492841 + AluY SINE Alu 1 309 -2 454 287 60 64 chr6 10922401 10922521 -171492721 + L1MEd LINE L1 1471 1590 -4539 1128 257 89 9 chr6 10922735 10923073 -171492169 - L1MC4a LINE L1 -1017 6791 6427 2283 111 0 0 chr6 10923092 10923389 -171491853 + AluSx SINE Alu 1 297 -15 416 240 32 19 chr6 10923419 10923573 -171491669 - L1MEd LINE L1 -4974 1145 990 476 259 152 32 chr6 10923598 10923946 -171491296 - L1MEd LINE L1 -5168 951 562 233 176 0 39 chr6 10924248 10924299 -171490943 + CT-rich Low_complexity Low_complexity 2 50 0 2296 89 0 29 chr6 10925090 10925405 -171489837 - AluSp SINE Alu -7 306 1 2214 96 0 0 chr6 10925422 10925704 -171489538 - AluSx SINE Alu -26 286 5 3041 147 4 7 chr6 10925720 10926184 -171489058 - L1PB3 LINE L1 -4 6150 5688 2026 96 0 4 chr6 10929945 10930215 -171485027 + AluSx SINE Alu 1 269 -43 2323 157 123 26 chr6 10930215 10930679 -171484563 + LTR22 LTR ERVK 1 509 0 222 37 0 0 chr6 10930699 10930726 -171484516 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2015 137 0 0 chr6 10931865 10932183 -171483059 - AluSx SINE Alu 0 318 1 1194 156 5 10 chr6 10932507 10932706 -171482536 - Tigger1 DNA MER2_type -4 2414 2217 1219 158 0 0 chr6 10932707 10932891 -171482351 + AluSx SINE Alu 1 184 -128 3153 140 16 26 chr6 10932897 10933236 -171482006 - Tigger1 DNA MER2_type -187 2231 1897 1429 91 73 170 chr6 10933236 10933565 -171481677 + AluSx SINE Alu 1 297 -15 3153 140 16 26 chr6 10933565 10933726 -171481516 - Tigger1 DNA MER2_type -521 1897 1736 1797 152 21 0 chr6 10933746 10934036 -171481206 - AluJo SINE Alu -16 296 1 22 0 0 0 chr6 10934525 10934547 -171480695 + AT_rich Low_complexity Low_complexity 1 22 0 2290 81 3 0 chr6 10935043 10935326 -171479916 + AluSg SINE Alu 1 284 -26 348 83 0 0 chr6 10935342 10935390 -171479852 + (CA)n Simple_repeat Simple_repeat 1 48 0 2037 102 76 0 chr6 10935390 10935665 -171479577 + AluSx SINE Alu 1 296 -16 806 235 0 6 chr6 10935915 10936094 -171479148 - AluJb SINE Alu -6 306 129 1293 144 25 38 chr6 10936244 10936482 -171478760 - MLT1F LTR MaLR -2 534 314 1323 162 9 0 chr6 10936482 10936698 -171478544 - MLT1B LTR MaLR -4 386 169 1120 201 0 19 chr6 10936702 10936911 -171478331 - AluJo SINE Alu -21 291 87 992 173 6 0 chr6 10936911 10937079 -171478163 - MLT1B LTR MaLR -221 169 1 549 208 0 104 chr6 10937079 10937223 -171478019 - MLT1F LTR MaLR -222 320 192 1916 154 3 25 chr6 10937525 10937844 -171477398 + AluJb SINE Alu 1 312 0 2297 84 10 0 chr6 10938378 10938676 -171476566 - AluSp SINE Alu -12 301 1 266 179 36 0 chr6 10938743 10938799 -171476443 - MLT1J LTR MaLR -344 167 110 325 325 140 61 chr6 10939263 10940180 -171475062 - L2 LINE L2 -337 2977 1989 488 268 83 62 chr6 10940183 10940536 -171474706 - MLT1L LTR MaLR -83 532 95 2214 117 0 0 chr6 10941676 10941974 -171473268 + AluSx SINE Alu 1 298 -14 2319 101 0 0 chr6 10943037 10943334 -171471908 - AluSp SINE Alu -16 297 1 2580 53 0 0 chr6 10943337 10943640 -171471602 - AluY SINE Alu -8 303 1 1178 155 0 0 chr6 10943645 10943813 -171471429 - FAM SINE Alu -3 172 5 2160 125 0 0 chr6 10943930 10944227 -171471015 + AluSx SINE Alu 1 297 -15 2093 149 0 0 chr6 10944257 10944565 -171470677 + AluJb SINE Alu 1 308 -4 493 273 30 23 chr6 10945006 10945138 -171470104 - MIR SINE MIR -128 134 2 2457 63 0 10 chr6 10945372 10945675 -171469567 - AluY SINE Alu -11 300 1 2160 75 0 8 chr6 10945889 10946156 -171469086 - AluSg SINE Alu -45 265 1 2315 110 0 0 chr6 10946874 10947174 -171468068 - AluSx SINE Alu -12 300 1 216 0 0 0 chr6 10948352 10948376 -171466866 + (CA)n Simple_repeat Simple_repeat 2 25 0 205 184 0 0 chr6 10948435 10948473 -171466769 - L2 LINE L2 -10 3303 3266 315 231 262 27 chr6 10948766 10948987 -171466255 + L1ME4a LINE L1 5774 6046 -75 1364 153 14 9 chr6 10949139 10949354 -171465888 + AluJb SINE Alu 5 220 -92 363 186 0 0 chr6 10949354 10949413 -171465829 + AluSg/x SINE Alu 153 211 -89 427 94 0 0 chr6 10949413 10949466 -171465776 - AluSg/x SINE Alu -171 139 87 * 601 152 0 0 chr6 10949461 10949553 -171465689 + AluSg/x SINE Alu 204 295 -15 330 26 0 0 chr6 10949554 10949593 -171465649 + (TA)n Simple_repeat Simple_repeat 1 39 0 476 213 147 37 chr6 10949608 10949744 -171465498 + MER33 DNA MER1_type 10 160 -164 802 138 0 9 chr6 10949746 10949862 -171465380 + AluJo/FLAM SINE Alu 3 117 -195 1854 147 0 27 chr6 10949865 10950165 -171465077 - AluJb SINE Alu -20 292 1 37 39 0 0 chr6 10950179 10950230 -171465012 + AT_rich Low_complexity Low_complexity 1 51 0 318 231 31 0 chr6 10950232 10950297 -171464945 - AluJ/FRAM SINE Alu -12 290 224 * 682 130 45 90 chr6 10950294 10950443 -171464799 + MER33 DNA MER1_type 193 334 -2290 2177 114 23 0 chr6 10950443 10950742 -171464500 - AluSg SINE Alu -4 306 1 682 130 45 90 chr6 10950742 10950769 -171464473 + MER33 DNA MER1_type 334 361 -2 2015 138 7 0 chr6 10950828 10951119 -171464123 - AluJb SINE Alu -19 293 1 2282 100 3 3 chr6 10951237 10951536 -171463706 + AluSq SINE Alu 1 299 -14 2425 83 0 19 chr6 10952056 10952369 -171462873 + AluSx SINE Alu 6 312 0 449 84 14 0 chr6 10952371 10952442 -171462800 + (TA)n Simple_repeat Simple_repeat 1 72 0 2073 104 0 17 chr6 10952450 10952739 -171462503 + AluSq SINE Alu 14 297 -16 1934 139 0 0 chr6 10953303 10953584 -171461658 - AluJb SINE Alu -27 285 5 2272 118 0 0 chr6 10954207 10954513 -171460729 + AluSx SINE Alu 1 306 -6 2091 114 40 3 chr6 10954867 10955166 -171460076 + AluSg SINE Alu 1 310 0 2428 100 0 0 chr6 10955378 10955688 -171459554 - AluSg SINE Alu 0 310 1 801 180 174 6 chr6 10955964 10956142 -171459100 + AluJb SINE Alu 86 293 -19 285 274 67 44 chr6 10956152 10956287 -171458955 + MIR SINE MIR 88 225 -37 210 71 0 0 chr6 10956886 10956914 -171458328 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 492 208 74 40 chr6 10956914 10957063 -171458179 - L2 LINE L2 -13 3300 3147 1395 236 116 48 chr6 10957064 10957424 -171457818 + L1ME3A LINE L1 5646 6049 -121 2270 87 0 13 chr6 10957424 10957724 -171457518 - AluSx SINE Alu -16 296 1 1395 236 116 48 chr6 10957724 10957847 -171457395 + L1ME3A LINE L1 6049 6162 -8 2259 99 10 0 chr6 10957866 10958169 -171457073 + AluSx SINE Alu 1 306 -6 252 231 218 55 chr6 10958172 10958499 -171456743 - L2 LINE L2 -157 3156 2541 1127 176 80 99 chr6 10958536 10958714 -171456528 - MSTB2 LTR MaLR 0 457 288 2196 81 34 14 chr6 10958714 10958849 -171456393 + AluSq SINE Alu 1 132 -181 2116 75 6 90 chr6 10958849 10959171 -171456071 + AluY SINE Alu 1 295 -16 2196 81 34 14 chr6 10959171 10959331 -171455911 + AluSq SINE Alu 132 302 -11 1127 176 80 99 chr6 10959331 10959504 -171455738 - MSTB2 LTR MaLR -169 288 113 653 204 55 11 chr6 10959508 10959685 -171455557 + MLT1C LTR MaLR 58 231 -159 376 127 0 0 chr6 10959690 10959753 -171455489 + L1MB8 LINE L1 6115 6177 -1 2788 174 37 57 chr6 10959768 10959913 -171455329 - MER6A DNA MER2_type -261 604 458 2069 102 53 3 chr6 10959913 10960198 -171455044 - AluSg SINE Alu -11 299 1 2788 174 37 57 chr6 10960198 10960645 -171454597 - MER6A DNA MER2_type -407 458 24 672 247 26 53 chr6 10960683 10960861 -171454381 - MER114 LTR ERV -427 221 49 2199 97 3 0 chr6 10960861 10961149 -171454093 + AluSq SINE Alu 1 289 -24 672 247 26 53 chr6 10961149 10961197 -171454045 - MER114 LTR ERV -599 49 1 2115 118 0 26 chr6 10961943 10962249 -171452993 - AluSx SINE Alu -14 298 1 2191 118 16 0 chr6 10962906 10963210 -171452032 + AluJb SINE Alu 4 312 0 626 201 158 18 chr6 10963696 10963860 -171451382 + MER105 DNA DNA 7 193 -11 2282 90 3 3 chr6 10964647 10964946 -171450296 - AluSp SINE Alu -14 299 1 21 36 0 0 chr6 10965156 10965184 -171450058 + AT_rich Low_complexity Low_complexity 1 28 0 1967 94 16 84 chr6 10965227 10965429 -171449813 - AluSq SINE Alu -15 298 124 2183 129 0 0 chr6 10965429 10965738 -171449504 - AluSx SINE Alu -3 309 1 1967 94 16 84 chr6 10965738 10965855 -171449387 - AluSq SINE Alu -189 124 1 788 191 0 15 chr6 10965901 10966032 -171449210 - FLAM_C SINE Alu -4 129 1 1983 114 22 4 chr6 10966387 10966704 -171448538 + AluSx SINE Alu 9 330 0 24 0 0 0 chr6 10966771 10966795 -171448447 + AT_rich Low_complexity Low_complexity 1 24 0 2436 84 10 0 chr6 10967091 10967389 -171447853 + AluSg SINE Alu 1 301 -9 991 265 0 5 chr6 10967957 10968172 -171447070 - MER20 DNA MER1_type -5 214 1 2115 137 0 0 chr6 10968680 10968980 -171446262 - AluSx SINE Alu -12 300 1 2209 116 0 3 chr6 10969739 10970041 -171445201 - AluSq SINE Alu -10 303 3 2208 100 34 0 chr6 10970043 10970334 -171444908 - AluSq SINE Alu -12 301 1 2219 103 3 0 chr6 10970479 10970793 -171444449 - AluSp SINE Alu 0 313 1 691 222 26 37 chr6 10971031 10971220 -171444022 + L2 LINE L2 3126 3312 -1 517 281 167 72 chr6 10971268 10971712 -171443530 - L3 LINE CR1 -157 1420 935 185 204 20 41 chr6 10971732 10971781 -171443461 - L2 LINE L2 -16 3297 3250 281 280 130 10 chr6 10972017 10972217 -171443025 - L3 LINE CR1 -820 757 534 197 361 50 20 chr6 10972284 10972486 -171442756 - L3 LINE CR1 -1222 355 148 324 292 100 38 chr6 10972998 10973238 -171442004 - MLT1J LTR MaLR 0 511 257 237 214 71 0 chr6 10973297 10973353 -171441889 - MIR SINE MIR -114 148 89 2269 134 0 0 chr6 10973937 10974243 -171440999 + AluSx SINE Alu 1 306 -6 183 42 0 0 chr6 10974350 10974374 -171440868 + (TG)n Simple_repeat Simple_repeat 2 25 0 2100 170 115 3 chr6 10974380 10974763 -171440479 - MSTB LTR MaLR 0 426 1 339 225 295 25 chr6 10975248 10975448 -171439794 + Charlie2 DNA MER1_type 72 325 -2537 1609 122 106 47 chr6 10975472 10975547 -171439695 + MER44D DNA MER2_type 1 70 -2421 2189 99 14 3 chr6 10975547 10975839 -171439403 + AluSx SINE Alu 1 295 -17 1609 122 106 47 chr6 10975839 10976083 -171439159 + MER44D DNA MER2_type 70 609 0 192 77 0 0 chr6 10976322 10976348 -171438894 + (T)n Simple_repeat Simple_repeat 1 26 0 278 220 0 0 chr6 10976352 10976411 -171438831 + Charlie2a DNA MER1_type 72 130 -2652 729 183 89 0 chr6 10976437 10976606 -171438636 + Charlie2a DNA MER1_type 828 1011 -1851 429 194 37 19 chr6 10976611 10976719 -171438523 + Charlie2a DNA MER1_type 2753 2862 0 2241 114 0 13 chr6 10976745 10977053 -171438189 - AluSx SINE Alu -7 305 2 32 57 0 0 chr6 10977097 10977150 -171438092 + AT_rich Low_complexity Low_complexity 1 53 0 1585 169 83 4 chr6 10977222 10977488 -171437754 + AluJb SINE Alu 11 297 -15 2520 53 7 10 chr6 10977628 10977927 -171437315 - AluY SINE Alu -13 298 1 201 167 0 0 chr6 10977985 10978021 -171437221 + (TTA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr6 10979233 10979255 -171435987 + AT_rich Low_complexity Low_complexity 1 22 0 2260 99 3 0 chr6 10979257 10979541 -171435701 - AluSq SINE Alu -28 285 1 2236 82 4 0 chr6 10981453 10981765 -171433477 - AluY SINE Alu 0 313 1 634 316 118 24 chr6 10981766 10982232 -171433010 - L2 LINE L2 -597 2717 2208 2383 83 10 0 chr6 10982626 10982926 -171432316 + AluSx SINE Alu 1 303 -9 480 18 0 0 chr6 10983244 10983301 -171431941 + (TG)n Simple_repeat Simple_repeat 1 57 0 2143 90 14 4 chr6 10983301 10983578 -171431664 - AluSq SINE Alu -33 280 1 2366 106 0 0 chr6 10983780 10984082 -171431160 + AluSx SINE Alu 1 302 -10 2314 92 20 0 chr6 10984758 10985050 -171430192 + AluSc SINE Alu 2 299 -10 197 273 0 18 chr6 10985428 10985483 -171429759 - L2 LINE L2 -1 3271 3218 2323 83 6 19 chr6 10985516 10985828 -171429414 + AluSq SINE Alu 1 308 -5 2456 103 0 0 chr6 10986346 10986658 -171428584 - AluSx SINE Alu 0 312 1 581 317 104 38 chr6 10986818 10986965 -171428277 + L2 LINE L2 2816 2952 -320 961 32 113 0 chr6 10986965 10987089 -171428153 - MER85 DNA T2_type -1 138 1 581 317 104 38 chr6 10987089 10987364 -171427878 + L2 LINE L2 2952 3266 -6 2261 92 4 0 chr6 10987566 10987871 -171427371 + AluSp SINE Alu 1 306 0 2047 117 10 17 chr6 10988080 10988379 -171426863 - AluSx SINE Alu -15 297 1 1819 88 146 8 chr6 10988439 10988699 -171426543 - AluSg1 SINE Alu -13 296 1 2049 132 4 0 chr6 10989416 10989726 -171425516 + AluSx SINE Alu 1 311 0 258 106 136 30 chr6 10990308 10990374 -171424868 + MER66A LTR ERV1 302 374 -104 765 173 0 23 chr6 10990390 10990523 -171424719 + AluJb SINE Alu 5 134 -178 258 267 151 0 chr6 10990528 10990614 -171424628 + Charlie2 DNA MER1_type 44 142 -2640 2475 219 106 33 chr6 10990743 10991505 -171423737 + Charlie2 DNA MER1_type 1856 2700 -162 2192 107 0 29 chr6 10991505 10991813 -171423429 + AluSg SINE Alu 1 299 -11 2475 219 106 33 chr6 10991813 10991987 -171423255 + Charlie2 DNA MER1_type 2700 2860 -2 2360 93 0 10 chr6 10992861 10993173 -171422069 + AluSc SINE Alu 1 309 0 187 280 160 13 chr6 10993398 10993473 -171421769 + MIR SINE MIR 58 143 -119 186 103 0 0 chr6 10994729 10994758 -171420484 + (ATG)n Simple_repeat Simple_repeat 1 29 0 235 167 103 26 chr6 10994817 10994895 -171420347 - MIR SINE MIR -70 192 109 394 280 127 11 chr6 10994999 10995188 -171420054 + MIR SINE MIR 47 257 -5 565 265 116 5 chr6 10995583 10995798 -171419444 - MIR SINE MIR -1 261 23 1760 160 13 32 chr6 10996264 10996576 -171418666 - AluJo SINE Alu -6 306 1 2212 114 0 13 chr6 10996910 10997209 -171418033 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 10997211 10997232 -171418010 + AT_rich Low_complexity Low_complexity 1 21 0 2233 82 51 10 chr6 10997686 10997980 -171417262 - AluSc SINE Alu -3 306 1 293 253 32 21 chr6 10998134 10998229 -171417013 - MIR SINE MIR -33 229 134 2290 82 0 82 chr6 10999718 11000059 -171415183 + AluSq SINE Alu 1 313 0 2336 99 0 10 chr6 11000389 11000693 -171414549 - AluSq SINE Alu -12 301 1 2179 102 3 20 chr6 11001638 11001941 -171413301 - AluSq SINE Alu -15 298 1 23 33 0 0 chr6 11001941 11001971 -171413271 + AT_rich Low_complexity Low_complexity 1 30 0 2151 126 0 7 chr6 11002875 11003177 -171412065 + AluSx SINE Alu 1 300 -12 2036 150 35 5 chr6 11003177 11003544 -171411698 - L1MC2 LINE L1 -30 6314 5934 1393 98 60 102 chr6 11003544 11003810 -171411432 + AluSx SINE Alu 58 312 0 1639 126 51 63 chr6 11003898 11004181 -171411061 + L1MC3 LINE L1 6686 6966 -819 2451 73 0 3 chr6 11004181 11004481 -171410761 + AluY SINE Alu 2 300 -11 1639 126 51 63 chr6 11004481 11004530 -171410712 + L1MC3 LINE L1 6966 7014 -771 186 71 0 0 chr6 11004531 11004559 -171410683 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 1886 118 4 0 chr6 11004568 11004822 -171410420 + AluSx SINE Alu 9 263 -49 1855 91 8 0 chr6 11004831 11005074 -171410168 + AluSp SINE Alu 63 307 -6 2256 138 11 17 chr6 11005104 11005466 -171409776 - LTR8 LTR ERV1 0 691 332 713 151 32 8 chr6 11005456 11005582 -171409660 + LTR19A LTR ERV1 358 486 0 * 1504 195 61 3 chr6 11005582 11005895 -171409347 + MER58B DNA MER1_type 9 339 -2 302 238 119 23 chr6 11005941 11006114 -171409128 + L1MC/D LINE L1 5530 5724 -545 478 139 0 0 chr6 11006114 11006186 -171409056 - AluS SINE Alu -241 72 1 2283 104 13 3 chr6 11006288 11006597 -171408645 + AluSq SINE Alu 1 312 -1 208 335 75 71 chr6 11006762 11007001 -171408241 + L2 LINE L2 3009 3248 -24 2400 91 0 0 chr6 11007498 11007795 -171407447 - AluSx SINE Alu -15 297 1 1439 175 35 14 chr6 11008053 11008338 -171406904 + AluJo SINE Alu 10 300 -12 2026 131 3 7 chr6 11009534 11009831 -171405411 - AluSx SINE Alu -16 296 1 460 311 84 41 chr6 11010744 11011255 -171403987 - L2 LINE L2 -27 3245 2717 633 165 0 0 chr6 11011278 11011375 -171403867 - AluSx SINE Alu -24 288 192 828 137 8 0 chr6 11011381 11011512 -171403730 - AluSx SINE Alu -181 132 1 419 314 268 18 chr6 11011514 11012185 -171403057 - L2 LINE L2 -601 2713 1875 2196 92 3 3 chr6 11012257 11012550 -171402692 - AluSp SINE Alu -20 293 1 642 109 7 130 chr6 11012577 11012715 -171402527 + 5S rRNA rRNA 1 121 0 1870 167 0 3 chr6 11012746 11013051 -171402191 + AluSx SINE Alu 1 304 -8 4790 34 0 5 chr6 11014660 11015221 -171400021 + LTR6B LTR ERV1 1 558 0 292 293 9 19 chr6 11016012 11016118 -171399124 - MIR SINE MIR -80 128 24 410 267 118 12 chr6 11016365 11016526 -171398716 + MIR SINE MIR 82 259 -3 1567 183 0 42 chr6 11016951 11017262 -171397980 + AluSx SINE Alu 1 298 -14 199 273 26 13 chr6 11018419 11018496 -171396746 + L2 LINE L2 2416 2493 -821 220 329 111 28 chr6 11018828 11018971 -171396271 - MIR SINE MIR -44 164 8 540 208 145 13 chr6 11019774 11019933 -171395309 - MIR SINE MIR -21 241 62 486 301 155 30 chr6 11019984 11020496 -171394746 + L2 LINE L2 2665 3313 0 2156 127 0 22 chr6 11020721 11021037 -171394205 + AluSx SINE Alu 1 309 -3 184 330 91 23 chr6 11021166 11021254 -171393988 + L2 LINE L2 3174 3267 -5 1604 170 43 7 chr6 11022326 11022602 -171392640 + AluJo SINE Alu 1 286 -26 1900 133 3 7 chr6 11022654 11022939 -171392303 - AluSg SINE Alu -26 284 1 1481 115 13 21 chr6 11022970 11023205 -171392037 - LTR12 LTR ERV1 0 714 482 3573 152 162 29 chr6 11023205 11023934 -171391308 - LTR12 LTR ERV1 0 826 1 2191 110 10 0 chr6 11024024 11024323 -171390919 - AluSq SINE Alu -11 302 1 1025 175 80 0 chr6 11024430 11024630 -171390612 + L1MDa LINE L1 16 231 -6309 1218 129 0 0 chr6 11024630 11024808 -171390434 + AluSg/x SINE Alu 123 300 -12 2263 93 40 0 chr6 11024831 11025131 -171390111 + AluSq SINE Alu 1 312 -1 617 242 89 111 chr6 11025168 11025582 -171389660 + L1MDa LINE L1 275 697 -5843 1797 130 26 0 chr6 11025582 11025851 -171389391 + AluSx SINE Alu 1 276 -36 2612 64 0 0 chr6 11025851 11026162 -171389080 - AluY SINE Alu 0 311 1 617 242 89 111 chr6 11026162 11026250 -171388992 + L1MDa LINE L1 695 1081 -5459 626 216 0 14 chr6 11026251 11026390 -171388852 + MER7A DNA MER2_type 2 136 -210 2236 106 0 0 chr6 11026390 11026700 -171388542 + AluSx SINE Alu 1 310 0 253 282 155 29 chr6 11026720 11026894 -171388348 - L2 LINE L2 -4 3309 3114 226 297 84 24 chr6 11027123 11027372 -171387870 - L1 LINE L1 -1797 4349 4086 2078 124 21 0 chr6 11027696 11027987 -171387255 + AluSx SINE Alu 2 298 -14 2206 107 0 0 chr6 11027989 11028293 -171386949 + AluSx SINE Alu 3 306 0 304 286 77 86 chr6 11028295 11028816 -171386426 + L1 LINE L1 4493 5006 -1140 * 472 176 123 65 chr6 11028792 11028962 -171386280 + L1MA7 LINE L1 6117 6287 -4 2062 131 3 3 chr6 11029025 11029315 -171385927 + AluSx SINE Alu 1 290 -22 956 112 15 0 chr6 11029323 11029457 -171385785 - LTR8 LTR ERV1 -544 147 12 2324 88 0 0 chr6 11029461 11029757 -171385485 + AluY SINE Alu 1 296 -15 275 234 66 66 chr6 11029826 11030053 -171385189 + L1 LINE L1 5164 5390 -756 1652 194 36 3 chr6 11030109 11030438 -171384804 + MER58B DNA MER1_type 1 340 -1 2284 84 10 7 chr6 11030645 11030941 -171384301 - AluSc SINE Alu -12 297 1 2450 85 0 0 chr6 11030943 11031249 -171383993 - AluSc SINE Alu -3 306 1 207 322 50 94 chr6 11031513 11031715 -171383527 + L2 LINE L2 3009 3201 -71 3146 128 50 116 chr6 11031717 11032453 -171382789 + LTR12 LTR ERV1 1 688 0 602 179 0 0 chr6 11032459 11032554 -171382688 + LTR12 LTR ERV1 620 714 0 2153 105 20 0 chr6 11033277 11033573 -171381669 - AluSg SINE Alu -8 302 1 339 55 7 11 chr6 11033591 11033605 -171381637 + AluSp/q SINE Alu 256 269 -34 1750 82 9 0 chr6 11033605 11033825 -171381417 + AluSp SINE Alu 2 223 -90 339 55 7 11 chr6 11033825 11033872 -171381370 + AluSp/q SINE Alu 269 302 -1 1515 184 20 30 chr6 11033884 11034183 -171381059 + AluJo SINE Alu 1 296 -16 2090 130 0 37 chr6 11035363 11035687 -171379555 - AluSx SINE Alu 0 312 1 2012 136 0 3 chr6 11035699 11036008 -171379234 - AluSx SINE Alu 0 308 1 2067 120 3 13 chr6 11036070 11036378 -171378864 + AluSg SINE Alu 1 305 -5 259 326 44 30 chr6 11037222 11037357 -171377885 - L2 LINE L2 -18 3295 3159 336 311 101 8 chr6 11037357 11037653 -171377589 - L2 LINE L2 -225 3047 2717 1682 130 11 15 chr6 11037664 11037926 -171377316 - AluSx SINE Alu -14 298 38 1473 146 13 4 chr6 11037926 11038151 -171377091 + AluSq SINE Alu 63 290 -23 2211 101 0 3 chr6 11038799 11039085 -171376157 - AluSg SINE Alu -17 293 9 300 248 24 48 chr6 11040648 11040773 -171374469 - MIR SINE MIR -135 127 6 428 245 123 18 chr6 11040996 11041159 -171374083 + MIR SINE MIR 82 261 -1 1740 176 0 13 chr6 11041599 11041911 -171373331 + AluSx SINE Alu 1 308 -4 955 168 5 47 chr6 11043187 11043378 -171371864 - AluSg SINE Alu -17 293 111 6935 170 121 38 chr6 11043396 11045040 -171370202 - pTR5 LTR ERV1 -9 2429 108 2907 214 74 61 chr6 11045040 11046348 -171368894 + LTR12 LTR ERV1 2 714 0 634 138 32 0 chr6 11046348 11046442 -171368800 - AluSg SINE Alu -199 111 15 1711 190 66 29 chr6 11046604 11047035 -171368207 + LTR10E LTR ERV1 161 602 0 1679 167 4 4 chr6 11047035 11047299 -171367943 - AluSx SINE Alu -48 264 1 203 330 117 0 chr6 11047593 11047687 -171367555 - MIR SINE MIR -59 149 45 1239 111 12 0 chr6 11047688 11047859 -171367383 + AluSg/x SINE Alu 121 293 -17 2643 210 89 4 chr6 11047864 11048727 -171366515 + L1MD1 LINE L1 2386 3316 -3224 1468 192 16 0 chr6 11048788 11049043 -171366199 + AluJb SINE Alu 6 264 -48 1992 210 29 4 chr6 11049122 11049598 -171365644 + L1MB8 LINE L1 4338 4825 -1321 629 39 0 0 chr6 11049599 11049676 -171365566 + AluS SINE Alu 2 78 -234 3471 180 46 42 chr6 11049700 11050159 -171365083 + L1MB8 LINE L1 5386 5851 -327 2412 89 0 0 chr6 11050159 11050463 -171364779 + AluSq SINE Alu 2 305 -8 3471 180 46 42 chr6 11050463 11050793 -171364449 + L1MB8 LINE L1 5851 6178 0 468 200 0 12 chr6 11050808 11050893 -171364349 + FLAM_A SINE Alu 33 116 -26 760 164 0 0 chr6 11051033 11051155 -171364087 + FLAM_C SINE Alu 2 123 -10 676 173 56 26 chr6 11051172 11051292 -171363950 + L1MD1 LINE L1 3467 3582 -2958 2167 119 3 0 chr6 11051292 11051595 -171363647 - AluSq SINE Alu -8 305 2 676 173 56 26 chr6 11051595 11051705 -171363537 + L1MD1 LINE L1 3582 3704 -2836 1600 230 92 13 chr6 11051714 11052082 -171363160 + L1MD1 LINE L1 4379 4793 -1747 2255 110 0 10 chr6 11052082 11052391 -171362851 + AluSg SINE Alu 1 306 -4 1600 230 92 13 chr6 11052391 11052491 -171362751 + L1MD1 LINE L1 4793 4884 -1656 2194 117 7 0 chr6 11052494 11052803 -171362439 + AluSq SINE Alu 1 311 -2 393 159 0 155 chr6 11052816 11052916 -171362326 + MER7A DNA MER2_type 1 80 -266 * 807 173 29 0 chr6 11052903 11053042 -171362200 + MER7A DNA MER2_type 204 346 0 2018 187 85 25 chr6 11053048 11053694 -171361548 + L1MD1 LINE L1 5007 5613 -1023 2332 104 0 13 chr6 11053694 11054002 -171361240 + AluSx SINE Alu 1 304 -8 2018 187 85 25 chr6 11054002 11054822 -171360420 + L1MD1 LINE L1 5613 6617 -19 1139 181 75 4 chr6 11055072 11055298 -171359944 - AluJo SINE Alu -8 304 63 1122 71 0 0 chr6 11055300 11055440 -171359802 + AluSg/x SINE Alu 166 305 -7 24 0 0 0 chr6 11055883 11055907 -171359335 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr6 11055921 11055943 -171359299 + AT_rich Low_complexity Low_complexity 1 22 0 1933 65 0 4 chr6 11056725 11056973 -171358269 + L1PA4 LINE L1 5909 6155 0 2586 167 11 23 chr6 11056973 11057447 -171357795 + L1MB7 LINE L1 5663 6130 -54 389 297 131 6 chr6 11058464 11058582 -171356660 + L2 LINE L2 2550 2698 -616 2348 101 0 28 chr6 11058582 11058900 -171356342 - AluSg SINE Alu -1 309 1 389 297 131 6 chr6 11058900 11058956 -171356286 + L2 LINE L2 2698 2746 -568 401 243 10 10 chr6 11058959 11059062 -171356180 + L1MC5 LINE L1 7758 7860 -101 478 303 251 5 chr6 11059150 11059529 -171355713 + L2 LINE L2 2842 3313 0 2246 85 18 0 chr6 11060178 11060460 -171354782 - AluSc SINE Alu -22 287 1 1955 122 7 14 chr6 11061178 11061517 -171353725 + AluSx SINE Alu 1 337 0 1863 103 139 48 chr6 11061692 11062023 -171353219 - MER46B DNA MER2_type 0 236 1 2431 58 3 42 chr6 11062398 11062710 -171352532 + AluY SINE Alu 1 300 -11 1964 161 0 19 chr6 11063234 11063550 -171351692 - AluJb SINE Alu -2 310 1 1928 131 68 14 chr6 11064020 11064126 -171351116 + L1PA11 LINE L1 5803 5902 -272 2229 126 3 0 chr6 11064126 11064436 -171350806 + AluSx SINE Alu 1 311 -1 1928 131 68 14 chr6 11064436 11064681 -171350561 + L1PA11 LINE L1 5902 6173 -1 914 148 75 223 chr6 11064994 11065145 -171350097 + MLT1A2 LTR MaLR 20 192 -182 2188 84 3 30 chr6 11065145 11065444 -171349798 + AluSx SINE Alu 1 291 -21 914 148 75 223 chr6 11065444 11065705 -171349537 + MLT1A2 LTR MaLR 192 371 -3 2187 122 0 3 chr6 11066272 11066584 -171348658 - AluY SINE Alu 0 311 1 236 289 173 0 chr6 11067030 11067134 -171348108 + MIR SINE MIR 13 134 -128 227 273 40 100 chr6 11067411 11067561 -171347681 + L2 LINE L2 2952 3092 -180 1852 121 71 11 chr6 11067596 11067877 -171347365 - AluSx SINE Alu -14 298 1 282 243 95 0 chr6 11068577 11068651 -171346591 - L2 LINE L2 0 3313 3233 1341 122 48 0 chr6 11068652 11068840 -171346402 - AluSq SINE Alu -114 199 3 417 218 57 104 chr6 11069298 11069491 -171345751 + MIR SINE MIR 3 186 -76 2391 73 3 7 chr6 11071223 11071526 -171343716 - AluSp SINE Alu -11 302 1 1133 188 5 0 chr6 11071560 11071768 -171343474 + AluJb SINE Alu 87 295 -17 1381 125 44 36 chr6 11072109 11072357 -171342885 - LTR10E LTR ERV1 -21 612 363 1220 46 10 34 chr6 11072357 11072555 -171342687 - LTR10E LTR ERV1 -381 252 2 513 120 0 0 chr6 11072680 11072755 -171342487 + AluS SINE Alu 2 76 -236 1893 78 90 15 chr6 11072781 11073049 -171342193 + AluSc SINE Alu 1 288 -21 1838 200 95 27 chr6 11073846 11074297 -171340945 + LTR2B LTR ERV1 9 490 0 235 86 0 0 chr6 11074828 11074863 -171340379 - L2 LINE L2 0 3313 3279 731 218 147 107 chr6 11075614 11076064 -171339178 - MLT1J LTR MaLR -43 468 1 357 224 0 0 chr6 11076164 11076231 -171339011 - MER2 DNA MER2_type -3 342 276 1919 109 33 4 chr6 11076232 11076507 -171338735 + AluSq SINE Alu 1 283 -30 1338 122 0 0 chr6 11076507 11076695 -171338547 + AluSg/x SINE Alu 115 302 -8 1012 146 70 0 chr6 11076777 11076948 -171338294 - MER2 DNA MER2_type -159 186 4 260 286 214 18 chr6 11077164 11077276 -171337966 + MER5A DNA MER1_type 50 183 -6 922 26 78 0 chr6 11078107 11078222 -171337020 - L1PA7 LINE L1 -1 6153 6030 379 146 49 37 chr6 11078702 11078784 -171336458 - L1MA10 LINE L1 -4 6330 6248 899 170 0 0 chr6 11079309 11079444 -171335798 + FRAM SINE Alu 2 136 -40 222 250 0 0 chr6 11080237 11080285 -171334957 + T-rich Low_complexity Low_complexity 1 48 0 881 168 0 56 chr6 11081161 11081340 -171333902 - FRAM SINE Alu -5 171 3 2698 148 102 5 chr6 11083257 11083716 -171331526 - MER61D LTR ERV1 0 501 1 291 302 116 28 chr6 11083721 11083936 -171331306 + MIR SINE MIR 11 244 -18 2128 127 102 40 chr6 11083989 11084400 -171330842 + L1MA8 LINE L1 3063 3508 -2638 1562 212 0 7 chr6 11084400 11084692 -171330550 + AluJo SINE Alu 1 290 -22 2128 127 102 40 chr6 11084692 11084751 -171330491 + L1MA8 LINE L1 3508 3562 -2584 828 165 0 0 chr6 11084766 11084893 -171330349 - FLAM_C SINE Alu -16 127 1 3551 161 41 17 chr6 11084894 11085233 -171330009 + L1MA8 LINE L1 3552 3881 -2265 1868 162 14 3 chr6 11085233 11085530 -171329712 - AluJb SINE Alu -10 302 3 3551 161 41 17 chr6 11085530 11085854 -171329388 + L1MA8 LINE L1 3881 4231 -1915 626 177 0 139 chr6 11085854 11086012 -171329230 + Tigger1 DNA MER2_type 1 136 -2282 2244 114 10 0 chr6 11086037 11086345 -171328897 - AluSx SINE Alu -1 311 1 830 148 126 16 chr6 11086345 11086385 -171328857 + Tigger1 DNA MER2_type 2216 2250 -168 2222 112 3 3 chr6 11086385 11086690 -171328552 - AluSc SINE Alu -4 305 1 830 148 126 16 chr6 11086690 11086711 -171328531 + Tigger1 DNA MER2_type 2250 2267 -151 841 123 0 46 chr6 11086711 11086841 -171328401 - FLAM_C SINE Alu -9 124 1 830 148 126 16 chr6 11086841 11086961 -171328281 + Tigger1 DNA MER2_type 2267 2418 0 5372 155 41 55 chr6 11086961 11087295 -171327947 + L1MA8 LINE L1 4230 4567 -1724 2069 119 6 26 chr6 11087295 11087607 -171327635 - AluSx SINE Alu -6 306 1 5372 155 41 55 chr6 11087607 11087675 -171327567 + L1MA8 LINE L1 4567 4634 -1657 2077 130 0 7 chr6 11087675 11087975 -171327267 + AluSx SINE Alu 7 304 -8 5372 155 41 55 chr6 11087975 11088580 -171326662 + L1MA8 LINE L1 4634 5246 -1045 2740 176 45 50 chr6 11088580 11089195 -171326047 - LTR9 LTR ERV1 0 612 1 5372 155 41 55 chr6 11089195 11089290 -171325952 + L1MA8 LINE L1 5246 5341 -950 416 36 0 0 chr6 11089290 11089346 -171325896 - L1PB2 LINE L1 -2 6149 6094 216 0 0 0 chr6 11089346 11089370 -171325872 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2141 106 7 0 chr6 11089370 11089653 -171325589 - AluSx SINE Alu -27 285 1 5372 155 41 55 chr6 11089653 11090394 -171324848 + L1MA8 LINE L1 5339 6089 -202 2319 97 7 3 chr6 11090394 11090692 -171324550 + AluSq SINE Alu 1 299 -14 5372 155 41 55 chr6 11090692 11090734 -171324508 + L1MA8 LINE L1 6089 6130 -161 725 127 18 0 chr6 11090734 11090844 -171324398 + HY1 scRNA scRNA 1 112 0 5372 155 41 55 chr6 11090844 11091032 -171324210 + L1MA8 LINE L1 6130 6286 -5 648 169 159 36 chr6 11091060 11091167 -171324075 - Charlie5 DNA MER1_type -15 2570 2478 1446 162 64 72 chr6 11091167 11091544 -171323698 + MLT1A2 LTR MaLR 1 374 0 648 169 159 36 chr6 11091544 11091631 -171323611 - Charlie5 DNA MER1_type -107 2478 2352 332 125 54 0 chr6 11091734 11091790 -171323452 - L1MB4 LINE L1 -1 6179 6121 292 105 0 0 chr6 11091790 11091828 -171323414 - U2 snRNA snRNA -150 38 1 844 159 61 0 chr6 11091830 11091993 -171323249 - L1MB3 LINE L1 -51 6132 5960 510 183 82 0 chr6 11091993 11092103 -171323139 - MER33 DNA MER1_type -274 50 1 888 218 35 5 chr6 11092600 11092797 -171322445 - MLT1B LTR MaLR 0 390 188 622 234 39 0 chr6 11092849 11092977 -171322265 - AluJo SINE Alu -178 134 2 630 200 80 27 chr6 11092988 11093138 -171322104 - MLT1B LTR MaLR -216 158 1 227 290 0 0 chr6 11093568 11093637 -171321605 + L2 LINE L2 2436 2504 -810 954 155 106 48 chr6 11094949 11095156 -171320086 - MER20 DNA MER1_type 0 219 1 601 200 31 15 chr6 11095168 11095298 -171319944 - MER5A DNA MER1_type -5 184 53 961 276 130 30 chr6 11095424 11095862 -171319380 + MLT1L LTR MaLR 40 521 -94 622 227 67 0 chr6 11095994 11096144 -171319098 - MER3 DNA MER1_type 0 209 50 316 234 112 90 chr6 11096204 11096392 -171318850 - MER106A DNA MER1_type -44 192 1 3877 228 49 42 chr6 11096547 11097930 -171317312 + L1PA11 LINE L1 2 2756 -4828 * 17210 133 30 12 chr6 11097929 11099986 -171315256 + L1PA11 LINE L1 3849 5867 -1745 2318 103 3 3 chr6 11099986 11100288 -171314954 + AluSq SINE Alu 1 302 -11 17210 133 30 12 chr6 11100288 11101084 -171314158 + L1PA11 LINE L1 5867 6750 -862 189 0 0 0 chr6 11101084 11101105 -171314137 + (CA)n Simple_repeat Simple_repeat 2 22 0 17210 133 30 12 chr6 11101105 11101400 -171313842 + L1PA11 LINE L1 6750 7038 -574 1360 59 6 6 chr6 11101400 11101569 -171313673 + AluY SINE Alu 130 298 -13 3658 82 80 4 chr6 11101569 11102095 -171313147 + L1PA11 LINE L1 7031 7596 -16 393 311 68 34 chr6 11102096 11102269 -171312973 - L2 LINE L2 -620 2694 2505 3316 144 40 36 chr6 11102269 11102718 -171312524 - MER41B LTR ERV1 0 635 182 1906 143 7 13 chr6 11102718 11103018 -171312224 - AluSx SINE Alu -14 298 1 3316 144 40 36 chr6 11103018 11103201 -171312041 - MER41B LTR ERV1 -453 182 1 393 311 68 34 chr6 11103201 11103320 -171311922 - L2 LINE L2 -809 2505 2392 1653 163 15 7 chr6 11103843 11104113 -171311129 - AluSx SINE Alu -10 302 31 8647 159 44 30 chr6 11104118 11105787 -171309455 - pTR5 LTR ERV1 -2 2436 744 372 160 43 0 chr6 11105810 11105904 -171309338 + CT-rich Low_complexity Low_complexity 1 98 0 2010 113 17 3 chr6 11105909 11106202 -171309040 - AluY SINE Alu -14 297 1 252 236 144 69 chr6 11106307 11106481 -171308761 + MLT1H LTR MaLR 114 300 -249 2314 162 86 54 chr6 11106539 11106660 -171308582 + MER34C LTR ERV1 31 147 -438 2461 75 0 0 chr6 11106660 11106955 -171308287 - AluSg SINE Alu -15 295 1 2314 162 86 54 chr6 11106955 11107371 -171307871 + MER34C LTR ERV1 147 585 0 752 161 121 7 chr6 11107436 11107585 -171307657 + HsTC2 DNA Tc2 228 393 -1505 535 234 54 0 chr6 11107738 11107849 -171307393 - MER58A DNA MER1_type 0 117 1 2174 98 4 0 chr6 11107868 11108186 -171307056 - AluSc SINE Alu 0 322 4 233 264 109 39 chr6 11108617 11108860 -171306382 + MER5C DNA MER1_type 7 323 -1 2239 125 0 0 chr6 11108899 11109195 -171306047 - AluSx SINE Alu -16 296 1 337 281 52 22 chr6 11109882 11110017 -171305225 + MIR3 SINE MIR 11 149 -59 635 178 123 6 chr6 11110718 11110881 -171304361 - MER5A DNA MER1_type -5 184 3 773 169 0 0 chr6 11110933 11111051 -171304191 + AluJo/FLAM SINE Alu 1 118 -184 917 125 31 0 chr6 11111052 11111204 -171304038 - AluSg/x SINE Alu 0 306 151 1573 114 9 5 chr6 11111441 11111661 -171303581 + AluSp SINE Alu 74 294 -19 1165 210 39 0 chr6 11111777 11112006 -171303236 - MER8 DNA MER2_type -1 238 1 4081 177 63 43 chr6 11113226 11113379 -171301863 + L1MB8 LINE L1 4643 4792 -1386 1439 68 111 10 chr6 11113379 11113586 -171301656 - MER30 DNA MER1_type 0 230 3 4081 177 63 43 chr6 11113586 11113951 -171301291 + L1MB8 LINE L1 4792 5148 -1030 2218 114 0 7 chr6 11113951 11114248 -171300994 + AluSx SINE Alu 3 297 -15 2275 118 0 3 chr6 11114251 11114557 -171300685 + AluSx SINE Alu 1 305 -7 4081 177 63 43 chr6 11114557 11115169 -171300073 + L1MB8 LINE L1 5149 5808 -370 2580 47 3 0 chr6 11115169 11115465 -171299777 + AluY SINE Alu 1 297 -14 4081 177 63 43 chr6 11115465 11115792 -171299450 + L1MB8 LINE L1 5808 6127 -51 2273 102 3 3 chr6 11115864 11116168 -171299074 - AluSq SINE Alu -9 304 1 472 255 151 0 chr6 11116902 11117008 -171298234 + MER96 DNA MER1_type? 54 175 0 2149 102 6 49 chr6 11117061 11117386 -171297856 + AluSx SINE Alu 1 311 -1 1355 170 40 74 chr6 11117470 11117780 -171297462 + MLT1D LTR MaLR 148 442 -63 2180 112 0 13 chr6 11117780 11118083 -171297159 + AluSx SINE Alu 1 299 -13 1355 170 40 74 chr6 11118083 11118145 -171297097 + MLT1D LTR MaLR 442 505 0 690 183 0 32 chr6 11118565 11118691 -171296551 - FLAM_A SINE Alu -15 127 6 354 314 98 17 chr6 11118735 11118971 -171296271 + L1MDa LINE L1 1665 1919 -4621 24 0 0 0 chr6 11119043 11119067 -171296175 + AT_rich Low_complexity Low_complexity 1 24 0 277 247 97 32 chr6 11119279 11119433 -171295809 - L1M4 LINE L1 -1956 4190 4027 2197 78 0 81 chr6 11119435 11119756 -171295486 + AluY SINE Alu 1 295 -16 334 319 42 11 chr6 11120417 11120608 -171294634 + L1M4 LINE L1 4900 5096 -1050 1863 145 0 11 chr6 11120673 11120949 -171294293 + AluJo SINE Alu 1 273 -39 391 208 17 8 chr6 11120972 11121092 -171294150 + GA-rich Low_complexity Low_complexity 2 122 0 260 347 65 39 chr6 11121092 11121475 -171293767 - L2 LINE L2 -444 2870 2478 356 364 17 0 chr6 11121485 11121661 -171293581 - L2 LINE L2 -958 2356 2178 564 199 33 17 chr6 11121671 11121805 -171293437 + MER58 DNA MER1_type 12 156 -94 283 335 71 50 chr6 11121805 11122169 -171293073 - L2 LINE L2 -1973 1341 970 432 270 14 20 chr6 11122436 11122584 -171292658 + MIR SINE MIR 113 259 -3 1386 142 44 0 chr6 11122602 11122827 -171292415 - MER46A DNA MER2_type 0 236 2 803 207 0 18 chr6 11122855 11123024 -171292218 - AluSg/x SINE Alu -13 297 132 31 26 0 0 chr6 11123266 11123304 -171291938 + AT_rich Low_complexity Low_complexity 1 38 0 1119 184 19 10 chr6 11123884 11124090 -171291152 + AluJo SINE Alu 1 208 -104 2460 261 44 75 chr6 11124101 11124131 -171291111 + ERVL LTR ERVL 3766 3795 -1969 2155 139 0 0 chr6 11124131 11124441 -171290801 + AluSx SINE Alu 1 310 -2 2460 261 44 75 chr6 11124441 11125126 -171290116 + ERVL LTR ERVL 3795 4446 -1318 2289 101 0 16 chr6 11125126 11125432 -171289810 - AluSx SINE Alu -11 301 1 2460 261 44 75 chr6 11125432 11125677 -171289565 + ERVL LTR ERVL 4446 4697 -1067 356 228 63 0 chr6 11125680 11125759 -171289483 - ERVL LTR ERVL -1912 3852 3769 1975 264 61 22 chr6 11125790 11126429 -171288813 + ERVL LTR ERVL 4719 5382 -382 347 200 156 0 chr6 11126776 11126866 -171288376 + LTR41 LTR ERVL 1 104 -669 2302 80 3 7 chr6 11126951 11127238 -171288004 + AluSx SINE Alu 1 286 -26 244 310 57 64 chr6 11127268 11127586 -171287656 + L1 LINE L1 2503 2822 -3324 378 0 0 0 chr6 11127586 11127628 -171287614 + (CA)n Simple_repeat Simple_repeat 2 43 0 244 310 57 64 chr6 11127628 11127681 -171287561 + L1 LINE L1 2822 2874 -3272 2203 121 3 10 chr6 11127681 11127995 -171287247 + AluSx SINE Alu 1 312 0 244 310 57 64 chr6 11127995 11128590 -171286652 + L1 LINE L1 2874 3463 -2683 310 242 65 61 chr6 11128781 11128878 -171286364 + L1 LINE L1 4185 4280 -1866 2303 101 10 0 chr6 11128878 11129176 -171286066 + AluSx SINE Alu 4 304 -8 310 242 65 61 chr6 11129176 11129309 -171285933 + L1 LINE L1 4280 4416 -1730 361 246 143 6 chr6 11129322 11129497 -171285745 - L1MC5 LINE L1 -33 7928 7730 1750 163 48 0 chr6 11129681 11129970 -171285272 + AluSx SINE Alu 1 303 -9 319 210 210 24 chr6 11130022 11130189 -171285053 + HAL1 LINE L1 1984 2181 -326 422 280 41 46 chr6 11130267 11130485 -171284757 + HAL1 LINE L1 2291 2507 0 2011 134 3 7 chr6 11130491 11130790 -171284452 + AluSx SINE Alu 14 311 -1 222 268 14 28 chr6 11132326 11132397 -171282845 + L2 LINE L2 3203 3272 0 2279 82 3 3 chr6 11132609 11132903 -171282339 - AluSg SINE Alu -16 294 1 1841 93 0 0 chr6 11133013 11133238 -171282004 + AluSq SINE Alu 1 225 -88 198 0 0 0 chr6 11133847 11133869 -171281373 + (A)n Simple_repeat Simple_repeat 1 22 0 1586 144 60 28 chr6 11134180 11134464 -171280778 + AluJo SINE Alu 18 310 -2 25 0 0 0 chr6 11134504 11134529 -171280713 + AT_rich Low_complexity Low_complexity 1 25 0 958 149 60 40 chr6 11134629 11134682 -171280560 - MER3 DNA MER1_type -4 205 155 2177 102 34 14 chr6 11134682 11134977 -171280265 + AluSx SINE Alu 1 301 -11 958 149 60 40 chr6 11134977 11135124 -171280118 - MER3 DNA MER1_type -54 155 1 1935 172 3 0 chr6 11135158 11135461 -171279781 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr6 11135579 11135607 -171279635 + AT_rich Low_complexity Low_complexity 1 28 0 2119 123 0 3 chr6 11136472 11136764 -171278478 - AluSx SINE Alu -21 291 1 831 162 71 0 chr6 11136771 11136925 -171278317 - MLT1A2 LTR MaLR -208 166 2 417 248 29 15 chr6 11137470 11137607 -171277635 + MIR SINE MIR 104 242 -20 180 111 0 0 chr6 11137877 11137904 -171277338 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1851 106 41 123 chr6 11139426 11139793 -171275449 + MER44D DNA MER2_type 1 607 -2 245 269 86 21 chr6 11139876 11139969 -171275273 + L2 LINE L2 2259 2357 -957 2152 114 32 66 chr6 11140917 11141294 -171273948 + THE1B LTR MaLR 1 364 0 232 321 12 12 chr6 11141708 11141792 -171273450 - L2 LINE L2 -55 3258 3175 2390 84 7 3 chr6 11141913 11142210 -171273032 + AluSq SINE Alu 1 298 -15 2349 100 0 10 chr6 11142450 11142760 -171272482 + AluSc SINE Alu 1 307 -2 2318 105 77 6 chr6 11142884 11143247 -171271995 + MLT1B LTR MaLR 1 389 -1 1051 188 22 0 chr6 11143610 11143791 -171271451 + AluJb SINE Alu 114 298 -14 1393 130 19 5 chr6 11144479 11144695 -171270547 - MER20 DNA MER1_type 0 219 1 1663 161 94 11 chr6 11144823 11145109 -171270133 + AluJb SINE Alu 2 311 -1 1866 206 67 28 chr6 11145358 11145820 -171269422 + MLT1D LTR MaLR 26 505 0 1732 171 0 14 chr6 11145849 11146135 -171269107 + AluJo SINE Alu 1 282 -30 845 196 24 6 chr6 11146151 11146319 -171268923 + FRAM SINE Alu 1 165 -11 22 0 0 0 chr6 11146410 11146432 -171268810 + AT_rich Low_complexity Low_complexity 1 22 0 295 191 0 16 chr6 11147385 11147448 -171267794 + MER5A DNA MER1_type 14 75 -114 2372 109 0 0 chr6 11147448 11147759 -171267483 + AluSx SINE Alu 1 311 -1 330 167 0 0 chr6 11147769 11147821 -171267421 + AluJb SINE Alu 1 52 -248 848 70 26 0 chr6 11147821 11147935 -171267307 + MER41A LTR ERV1 1 117 -437 7426 106 150 88 chr6 11147938 11149518 -171265724 + pTR5 LTR ERV1 761 2438 0 2900 91 72 2 chr6 11149522 11149938 -171265304 + MER41A LTR ERV1 109 553 -1 1347 207 4 0 chr6 11149938 11150180 -171265062 + AluJb SINE Alu 50 292 -20 2102 129 10 7 chr6 11150849 11151158 -171264084 - AluSx SINE Alu -2 310 1 308 267 17 75 chr6 11151566 11151686 -171263556 + MIR3 SINE MIR 11 123 -85 749 224 70 8 chr6 11151714 11151955 -171263287 + MER112 DNA MER1_type 1 256 0 276 285 51 29 chr6 11152473 11152610 -171262632 + L1ME LINE L1 5485 5624 -497 352 273 168 6 chr6 11152733 11152894 -171262348 + MIR SINE MIR 64 250 -12 1177 183 9 5 chr6 11152979 11153192 -171262050 - MER20 DNA MER1_type -5 214 1 2317 110 0 0 chr6 11153216 11153524 -171261718 + AluSx SINE Alu 1 308 -4 2595 65 0 0 chr6 11153874 11154180 -171261062 + AluSc SINE Alu 1 306 -3 810 124 22 58 chr6 11154263 11154400 -171260842 - FLAM_C SINE Alu -1 132 1 193 353 72 18 chr6 11155372 11155539 -171259703 + L2 LINE L2 2563 2738 -576 2184 159 12 58 chr6 11155946 11156361 -171258881 + MSTD LTR MaLR 1 396 0 265 358 112 0 chr6 11156378 11156512 -171258730 + Charlie8 DNA MER1_type 9 157 -2260 665 251 29 78 chr6 11156733 11156816 -171258426 + L1ME3A LINE L1 5359 5445 -676 573 246 0 8 chr6 11156816 11156946 -171258296 - FLAM_A SINE Alu 0 133 5 665 251 29 78 chr6 11156946 11157126 -171258116 + L1ME3A LINE L1 5445 5605 -516 2517 69 3 3 chr6 11157126 11157429 -171257813 + AluSp SINE Alu 2 304 -9 665 251 29 78 chr6 11157429 11157486 -171257756 + L1ME3A LINE L1 5605 5663 -458 533 302 45 11 chr6 11157551 11157730 -171257512 + MIR SINE MIR 50 234 -28 302 271 49 49 chr6 11157799 11157934 -171257308 + L1ME3A LINE L1 5740 5877 -244 2319 126 41 60 chr6 11157934 11158309 -171256933 + MSTA LTR MaLR 1 368 -60 1959 95 0 4 chr6 11158309 11158562 -171256680 + AluSx SINE Alu 55 306 -6 2319 126 41 60 chr6 11158562 11158622 -171256620 + MSTA LTR MaLR 368 428 0 302 271 49 49 chr6 11158622 11158689 -171256553 + L1ME3A LINE L1 5876 5942 -179 520 263 114 63 chr6 11159022 11159189 -171256053 + MLT1H LTR MaLR 15 172 -377 2284 96 0 0 chr6 11159189 11159470 -171255772 - AluSx SINE Alu -31 281 1 520 263 114 63 chr6 11159470 11159618 -171255624 + MLT1H LTR MaLR 172 346 -203 441 231 32 102 chr6 11159846 11159993 -171255249 + MER5B DNA MER1_type 1 134 -44 1957 146 23 3 chr6 11159993 11160294 -171254948 + AluJb SINE Alu 1 307 -5 441 231 32 102 chr6 11160294 11160332 -171254910 + MER5B DNA MER1_type 134 173 -5 1294 164 5 18 chr6 11160337 11160556 -171254686 - AluJo SINE Alu -12 300 85 1932 158 13 7 chr6 11160614 11160924 -171254318 - AluJb SINE Alu 0 312 1 2231 83 0 52 chr6 11161306 11161589 -171253653 + AluSc SINE Alu 1 266 -43 359 56 19 0 chr6 11161589 11161643 -171253599 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2231 83 0 52 chr6 11161643 11161685 -171253557 + AluSc SINE Alu 266 309 0 2191 119 3 0 chr6 11161689 11161984 -171253258 + AluSx SINE Alu 2 297 -15 370 230 36 50 chr6 11161984 11162123 -171253119 + MER74B LTR ERVL 420 556 -66 408 268 127 33 chr6 11163132 11163345 -171251897 + L1ME3A LINE L1 5933 6165 -5 2434 84 3 3 chr6 11163533 11163843 -171251399 - AluY SINE Alu -1 310 1 1731 140 0 79 chr6 11164411 11164749 -171250493 + AluJb SINE Alu 1 312 0 648 253 69 16 chr6 11164852 11165097 -171250145 + L1ME1 LINE L1 5892 6149 -17 662 278 57 5 chr6 11166524 11166736 -171248506 - MIR SINE MIR -9 253 31 270 284 59 10 chr6 11167196 11167298 -171247944 - MIR SINE MIR -76 186 80 539 223 0 16 chr6 11167388 11167509 -171247733 - MIR3 SINE MIR -37 171 53 937 120 0 0 chr6 11167741 11167874 -171247368 + FLAM_C SINE Alu 1 133 0 1960 153 7 3 chr6 11168048 11168349 -171246893 + AluSx SINE Alu 1 302 -10 262 283 38 38 chr6 11168419 11168525 -171246717 - MIR SINE MIR -137 125 20 2256 100 3 0 chr6 11168970 11169261 -171245981 - AluSg SINE Alu -18 292 1 284 227 11 34 chr6 11169588 11169676 -171245566 + L1MC5 LINE L1 7830 7915 -46 2435 71 10 7 chr6 11169928 11170236 -171245006 + AluY SINE Alu 1 309 -2 1328 154 5 5 chr6 11170442 11170650 -171244592 + AluJb SINE Alu 85 292 -20 202 308 158 34 chr6 11170912 11171058 -171244184 - MIR SINE MIR -73 189 26 285 167 0 0 chr6 11171081 11171129 -171244113 + MER113 DNA MER1_type? 8 55 -466 867 219 11 0 chr6 11171258 11171445 -171243797 + MER5A DNA MER1_type 1 189 0 478 237 71 30 chr6 11171448 11171617 -171243625 - MIR SINE MIR -58 204 29 1757 179 7 3 chr6 11171871 11172168 -171243074 + AluJo SINE Alu 6 303 -9 2119 112 3 7 chr6 11172462 11172784 -171242458 + AluSc SINE Alu 1 309 0 208 272 35 155 chr6 11174309 11174599 -171240643 - L2 LINE L2 -72 3200 2946 2455 72 0 0 chr6 11174651 11174943 -171240299 + AluSc SINE Alu 1 292 -17 2009 151 3 3 chr6 11175089 11175387 -171239855 - AluJo SINE Alu -14 298 1 749 83 49 27 chr6 11176061 11176757 -171238485 + (CA)n Simple_repeat Simple_repeat 1 711 0 194 266 0 75 chr6 11176997 11177091 -171238151 + MIR SINE MIR 51 137 -125 205 119 24 24 chr6 11177562 11177604 -171237638 + (TG)n Simple_repeat Simple_repeat 2 43 0 1012 118 14 0 chr6 11180159 11180303 -171234939 + FRAM SINE Alu 1 146 -30 423 0 0 0 chr6 11180423 11180470 -171234772 + (CA)n Simple_repeat Simple_repeat 1 47 0 3708 185 50 55 chr6 11180596 11181569 -171233673 + LTR5 LTR ERVK 1 969 0 324 288 42 17 chr6 11182321 11182439 -171232803 - MIR3 SINE MIR -23 185 65 368 330 84 14 chr6 11182468 11182683 -171232559 + MIR SINE MIR 33 262 0 456 63 63 40 chr6 11182879 11183053 -171232189 + (TA)n Simple_repeat Simple_repeat 2 179 0 475 149 50 37 chr6 11183053 11183214 -171232028 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 373 133 55 12 chr6 11183214 11183379 -171231863 + (TA)n Simple_repeat Simple_repeat 1 172 0 399 171 18 9 chr6 11183430 11183541 -171231701 + (TA)n Simple_repeat Simple_repeat 2 113 0 2285 110 3 0 chr6 11183933 11184243 -171230999 + AluSp SINE Alu 1 311 -2 270 325 0 0 chr6 11185241 11185321 -171229921 - Charlie8 DNA MER1_type -2221 196 117 2362 109 0 0 chr6 11185657 11185969 -171229273 - AluSx SINE Alu 0 312 1 243 297 47 7 chr6 11186314 11186462 -171228780 + L1ME LINE L1 5279 5432 -730 1183 104 0 29 chr6 11186474 11186647 -171228595 - MER54A LTR ERVL 0 901 734 264 200 64 129 chr6 11186726 11186757 -171228485 + L2 LINE L2 3177 3208 -105 2465 69 7 0 chr6 11186757 11187060 -171228182 + AluY SINE Alu 1 305 -6 264 200 64 129 chr6 11187060 11187095 -171228147 + L2 LINE L2 3208 3244 -69 2050 110 33 20 chr6 11187095 11187394 -171227848 - AluSx SINE Alu -9 303 1 264 200 64 129 chr6 11187394 11187466 -171227776 + L2 LINE L2 3244 3307 -6 791 106 24 8 chr6 11187507 11187630 -171227612 - MER6 DNA MER2_type -258 607 483 2298 119 0 0 chr6 11187662 11187973 -171227269 + AluSq SINE Alu 1 311 -2 1485 175 98 7 chr6 11188393 11188562 -171226680 - AluJo SINE Alu 0 312 160 243 61 0 0 chr6 11188562 11188595 -171226647 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1485 175 98 7 chr6 11188595 11188711 -171226531 - AluJo SINE Alu -152 160 1 975 183 103 18 chr6 11189109 11189333 -171225909 - MER58B DNA MER1_type -15 326 84 968 70 0 0 chr6 11189333 11189448 -171225794 + AluSq SINE Alu 1 115 -197 2736 58 7 21 chr6 11189448 11189947 -171225295 - LTR7 LTR ERV1 -2 448 1 1418 107 0 10 chr6 11189947 11190144 -171225098 + AluSq SINE Alu 109 303 -10 353 227 107 0 chr6 11190810 11190885 -171224357 - MER58B DNA MER1_type -258 83 1 308 268 71 9 chr6 11191083 11191195 -171224047 + MIR SINE MIR 92 210 -52 442 307 0 43 chr6 11191322 11191485 -171223757 + MIR SINE MIR 94 249 -13 232 323 81 16 chr6 11191796 11191920 -171223322 + MIR SINE MIR 9 140 -122 2437 72 0 34 chr6 11192741 11193061 -171222181 - AluY SINE Alu -2 309 1 575 216 18 0 chr6 11193363 11193474 -171221768 + MER81 DNA DNA 2 114 0 2184 105 0 17 chr6 11193850 11194144 -171221098 + AluSq SINE Alu 1 289 -24 246 282 45 18 chr6 11194375 11194485 -171220757 + MIR3 SINE MIR 96 208 0 1403 175 130 0 chr6 11195269 11195538 -171219704 + AluJb SINE Alu 2 305 -7 645 126 42 7 chr6 11195538 11195681 -171219561 + GA-rich Low_complexity Low_complexity 1 148 0 886 185 7 0 chr6 11196017 11196168 -171219074 + FRAM SINE Alu 1 152 -14 351 0 0 0 chr6 11196228 11196267 -171218975 + (TG)n Simple_repeat Simple_repeat 1 39 0 1614 203 10 0 chr6 11198030 11198325 -171216917 - AluJo SINE Alu -14 298 1 810 134 0 0 chr6 11198341 11198453 -171216789 - FLAM_C SINE Alu -18 125 14 1751 183 14 0 chr6 11198909 11199194 -171216048 + AluJb SINE Alu 1 289 -23 2368 138 82 30 chr6 11199737 11200163 -171215079 - MER83 LTR ERV1 0 448 1 672 297 127 13 chr6 11200263 11200719 -171214523 + L2 LINE L2 2794 3309 -4 730 228 60 5 chr6 11200750 11200934 -171214308 - MIR SINE MIR -67 195 2 185 337 12 12 chr6 11200966 11201049 -171214193 - MIR SINE MIR -172 90 8 270 263 50 10 chr6 11201241 11201340 -171213902 + MIR SINE MIR 93 195 -67 288 0 0 0 chr6 11201693 11201725 -171213517 + (TA)n Simple_repeat Simple_repeat 2 33 0 2351 109 0 0 chr6 11201731 11202043 -171213199 - AluSx SINE Alu 0 312 1 266 228 114 0 chr6 11202060 11202139 -171213103 + MIR SINE MIR 118 205 -57 1814 133 15 0 chr6 11202332 11202595 -171212647 - AluSx SINE Alu -14 298 32 246 32 0 0 chr6 11202815 11202846 -171212396 + (T)n Simple_repeat Simple_repeat 1 31 0 1295 158 5 0 chr6 11202865 11203067 -171212175 - AluJo SINE Alu -109 203 1 372 297 113 15 chr6 11203067 11203262 -171211980 + MLT1K LTR MaLR 211 424 -164 289 260 0 0 chr6 11203271 11203348 -171211894 - MER81 DNA DNA -37 77 1 504 259 36 18 chr6 11203352 11203518 -171211724 + MLT1K LTR MaLR 413 581 -7 2351 95 13 0 chr6 11204041 11204345 -171210897 + AluSp SINE Alu 1 308 -5 2150 103 0 7 chr6 11205112 11205404 -171209838 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr6 11207053 11207089 -171208153 + AT_rich Low_complexity Low_complexity 1 36 0 525 276 226 22 chr6 11207212 11207574 -171207668 - L2 LINE L2 0 3313 2878 1739 169 0 13 chr6 11207711 11208012 -171207230 + AluJo SINE Alu 1 297 -15 2079 133 0 0 chr6 11211597 11211891 -171203351 - AluJb SINE Alu -18 294 1 1628 162 75 12 chr6 11212781 11213102 -171202140 + MER2 DNA MER2_type 1 341 -3 242 220 0 0 chr6 11213102 11213152 -171202090 + MER2 DNA MER2_type 296 345 0 22 0 0 0 chr6 11213182 11213204 -171202038 + AT_rich Low_complexity Low_complexity 1 22 0 2411 99 0 3 chr6 11213444 11213758 -171201484 + AluSq SINE Alu 1 313 0 2197 115 0 0 chr6 11213760 11214055 -171201187 + AluSg1 SINE Alu 1 295 -14 49 0 0 0 chr6 11214055 11214104 -171201138 + AT_rich Low_complexity Low_complexity 1 49 0 379 270 71 16 chr6 11214600 11214726 -171200516 - MER5A DNA MER1_type -1 188 56 1504 181 41 11 chr6 11214726 11214996 -171200246 + AluJb SINE Alu 7 284 -28 197 297 94 0 chr6 11215009 11215073 -171200169 - MER5A DNA MER1_type -116 73 4 1996 114 64 0 chr6 11215167 11215448 -171199794 + AluSq SINE Alu 1 299 -14 1028 113 0 0 chr6 11215798 11215939 -171199303 + AluSg/x SINE Alu 166 306 -4 1016 244 29 21 chr6 11215967 11216246 -171198996 + L1ME3A LINE L1 5479 5759 -411 811 132 5 137 chr6 11216256 11216446 -171198796 - MER20 DNA MER1_type 0 219 55 2174 100 10 3 chr6 11216447 11216737 -171198505 + AluSg SINE Alu 2 293 -17 679 223 39 18 chr6 11216762 11216990 -171198252 + L1ME3A LINE L1 5802 5942 -228 738 132 0 83 chr6 11217241 11217385 -171197857 - FRAM SINE Alu -5 171 40 3180 219 191 18 chr6 11217385 11218465 -171196777 + L1MC4 LINE L1 6775 8041 -1 268 250 20 30 chr6 11218447 11218547 -171196695 + L1MB7 LINE L1 5033 5131 -1015 * 26 0 0 0 chr6 11218746 11218772 -171196470 + AT_rich Low_complexity Low_complexity 1 26 0 2228 111 0 7 chr6 11218826 11219124 -171196118 - AluSg SINE Alu -12 298 3 617 193 0 18 chr6 11219125 11219239 -171196003 + Tigger2 DNA MER2_type 2597 2708 -10 2032 113 3 7 chr6 11220521 11220841 -171194401 - AluSq SINE Alu 0 319 1 256 74 0 37 chr6 11220843 11220897 -171194345 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2150 87 4 7 chr6 11220897 11221173 -171194069 - AluSg SINE Alu -28 282 8 2331 86 7 0 chr6 11221180 11221471 -171193771 - AluSx SINE Alu -19 293 1 264 208 56 28 chr6 11221629 11221701 -171193541 + MIR SINE MIR 58 131 -131 3328 181 79 28 chr6 11221754 11222012 -171193230 + L1MB7 LINE L1 5348 5591 -593 1834 128 53 18 chr6 11222012 11222294 -171192948 + AluSx SINE Alu 1 292 -20 2584 73 0 6 chr6 11222295 11222609 -171192633 + AluSq SINE Alu 1 312 -1 3328 181 79 28 chr6 11222609 11223129 -171192113 + L1MB7 LINE L1 5590 6168 -16 3682 86 48 11 chr6 11223960 11224497 -171190745 + L1PA11 LINE L1 5616 6172 -2 334 127 28 14 chr6 11225336 11225407 -171189835 + CT-rich Low_complexity Low_complexity 1 72 0 1827 144 34 7 chr6 11225407 11225699 -171189543 - AluJb SINE Alu -12 300 1 417 278 127 58 chr6 11225863 11226014 -171189228 - MIR SINE MIR -12 250 80 2447 91 3 0 chr6 11226014 11226322 -171188920 + AluSp SINE Alu 1 309 -4 417 278 127 58 chr6 11226322 11226375 -171188867 - MIR SINE MIR -182 80 32 1824 136 4 191 chr6 11227015 11227045 -171188197 + MER47B DNA MER2_type 1 35 -2288 180 0 0 0 chr6 11227045 11227065 -171188177 + (TA)n Simple_repeat Simple_repeat 2 21 0 2350 87 0 3 chr6 11227065 11227377 -171187865 - AluSx SINE Alu -1 311 1 1824 136 4 191 chr6 11227377 11227773 -171187469 + MER47B DNA MER2_type 34 319 -2004 2255 93 10 0 chr6 11227773 11228083 -171187159 - AluSq SINE Alu 0 313 1 1824 136 4 191 chr6 11228083 11228168 -171187074 + MER47B DNA MER2_type 319 418 0 1626 98 9 0 chr6 11228438 11228662 -171186580 + AluSq SINE Alu 1 226 -87 1035 83 0 0 chr6 11228662 11228795 -171186447 + AluSg/x SINE Alu 165 297 -15 2180 91 10 0 chr6 11228848 11229144 -171186098 + AluY SINE Alu 1 299 -12 2283 96 0 0 chr6 11230297 11230598 -171184644 - AluSx SINE Alu -9 303 3 992 180 20 10 chr6 11230635 11230835 -171184407 - AluJo SINE Alu -24 288 87 2056 112 20 0 chr6 11231066 11231360 -171183882 + AluSx SINE Alu 1 300 -12 2120 108 0 40 chr6 11231672 11231995 -171183247 - AluSx SINE Alu -1 311 2 546 150 0 79 chr6 11231995 11232122 -171183120 + Charlie5 DNA MER1_type 2508 2624 0 2167 99 3 10 chr6 11232173 11232477 -171182765 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11232567 11232594 -171182648 + (A)n Simple_repeat Simple_repeat 1 27 0 903 156 31 145 chr6 11232775 11233064 -171182178 + AluJo SINE Alu 43 298 -14 274 185 19 0 chr6 11233299 11233353 -171181889 - L3 LINE CR1 -2 1575 1521 490 310 81 66 chr6 11233454 11233802 -171181440 - L3 LINE CR1 -237 1340 988 442 265 166 7 chr6 11233946 11234097 -171181145 - MER5B DNA MER1_type 0 178 4 298 266 73 62 chr6 11234315 11234444 -171180798 + MIR3 SINE MIR 20 158 -50 2107 81 46 3 chr6 11234444 11234729 -171180513 - AluSg SINE Alu -13 297 1 298 266 73 62 chr6 11234729 11234745 -171180497 + MIR3 SINE MIR 158 172 -36 183 42 0 0 chr6 11234753 11234777 -171180465 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 864 119 0 0 chr6 11234795 11234913 -171180329 - FLAM_C SINE Alu -15 118 1 1957 116 0 11 chr6 11235117 11235422 -171179820 - AluSx SINE Alu 0 302 1 197 275 50 0 chr6 11237620 11237700 -171177542 + MIR SINE MIR 124 207 -55 2225 95 0 3 chr6 11238050 11238354 -171176888 - AluSq SINE Alu -4 309 7 24 32 0 0 chr6 11238515 11238546 -171176696 + AT_rich Low_complexity Low_complexity 1 31 0 644 182 41 8 chr6 11238547 11238668 -171176574 - FLAM_C SINE Alu -18 125 1 853 121 15 8 chr6 11238799 11238931 -171176311 + FLAM_C SINE Alu 1 133 0 1103 152 0 45 chr6 11240633 11240831 -171174411 - AluSp SINE Alu 0 313 125 1717 58 4 9 chr6 11241024 11241250 -171173992 + AluSp SINE Alu 75 299 -14 2556 33 0 3 chr6 11241508 11241811 -171173431 - AluY SINE Alu -9 302 1 2073 97 3 22 chr6 11242053 11242364 -171172878 - AluSq SINE Alu -8 305 1 1845 126 43 0 chr6 11243323 11243600 -171171642 + AluSx SINE Alu 10 298 -14 276 231 62 15 chr6 11243878 11243943 -171171299 - L2 LINE L2 -4 3309 3242 264 240 132 66 chr6 11244726 11244847 -171170395 + MIR3 SINE MIR 2 130 -78 816 150 8 8 chr6 11245002 11245135 -171170107 + FLAM_A SINE Alu 1 133 0 1958 131 24 0 chr6 11245214 11245512 -171169730 - AluSx SINE Alu -7 305 1 2218 90 3 10 chr6 11245526 11245838 -171169404 - AluSp SINE Alu 0 313 4 2102 108 13 3 chr6 11245845 11246150 -171169092 - AluSx SINE Alu -4 308 1 315 228 67 40 chr6 11246181 11246330 -171168912 + L1ME4a LINE L1 5968 6120 -1 1991 102 14 10 chr6 11247053 11247348 -171167894 + AluSx SINE Alu 1 296 -16 312 226 157 57 chr6 11247381 11247540 -171167702 + L1ME4a LINE L1 5525 5699 -422 2256 65 3 3 chr6 11247639 11247932 -171167310 + AluY SINE Alu 1 293 -18 1555 162 0 4 chr6 11247932 11248204 -171167038 + AluJb SINE Alu 42 312 0 239 139 0 0 chr6 11248218 11248254 -171166988 + L1ME4a LINE L1 5761 5796 -446 239 272 109 7 chr6 11248372 11248519 -171166723 + L1ME4a LINE L1 5959 6120 -1 2318 67 0 7 chr6 11248718 11249018 -171166224 - AluY SINE Alu -13 298 1 2357 76 3 0 chr6 11249247 11249550 -171165692 + AluSp SINE Alu 1 304 -9 2200 114 58 15 chr6 11249583 11249979 -171165263 + L1MA3 LINE L1 5893 6305 0 23 0 0 0 chr6 11250057 11250080 -171165162 + AT_rich Low_complexity Low_complexity 1 23 0 2006 123 0 0 chr6 11250090 11250374 -171164868 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 11250379 11250400 -171164842 + AT_rich Low_complexity Low_complexity 1 21 0 289 299 92 38 chr6 11252097 11252281 -171162961 - MIR SINE MIR -20 242 49 1213 168 68 97 chr6 11252283 11252447 -171162795 - AluJb SINE Alu -1 301 134 2279 93 0 0 chr6 11252447 11252748 -171162494 - AluSq SINE Alu -12 301 1 1213 168 68 97 chr6 11252748 11252766 -171162476 - AluJb SINE Alu -168 134 117 2106 89 7 0 chr6 11252766 11253078 -171162164 + AluSp SINE Alu 1 314 0 1213 168 68 97 chr6 11253078 11253203 -171162039 - AluJb SINE Alu -185 117 1 288 333 116 21 chr6 11253234 11253423 -171161819 + L2 LINE L2 2953 3159 -113 2301 152 47 19 chr6 11253457 11253884 -171161358 - L1MA6 LINE L1 0 6300 5862 1576 209 30 6 chr6 11253985 11254315 -171160927 + MER58B DNA MER1_type 1 338 -3 692 308 71 5 chr6 11254463 11254687 -171160555 + MIR SINE MIR 21 259 -3 2078 127 0 0 chr6 11255384 11255683 -171159559 - AluSx SINE Alu -13 299 1 2366 137 6 3 chr6 11255766 11256125 -171159117 + MER46B DNA MER2_type 2 236 0 27 0 0 0 chr6 11256167 11256194 -171159048 + AT_rich Low_complexity Low_complexity 1 27 0 269 285 122 16 chr6 11256227 11256350 -171158892 - MIR3 SINE MIR -17 191 56 307 53 0 0 chr6 11256866 11256904 -171158338 - tRNA-Gln-CAG tRNA tRNA -37 38 1 2138 108 0 7 chr6 11257137 11257444 -171157798 - AluSx SINE Alu -3 309 5 1567 168 20 7 chr6 11257459 11257756 -171157486 - L1MB2 LINE L1 -7 6164 5864 1167 166 5 0 chr6 11257934 11258127 -171157115 - MER20 DNA MER1_type 0 219 26 977 184 0 22 chr6 11258209 11258388 -171156854 + FAM SINE Alu 1 175 0 186 179 0 0 chr6 11258401 11258429 -171156813 + L2 LINE L2 3224 3251 -21 346 326 17 65 chr6 11258512 11258753 -171156489 + MIR SINE MIR 12 238 -24 1000 212 37 8 chr6 11258777 11259018 -171156224 - L1MB7 LINE L1 -9 6175 5928 239 53 0 26 chr6 11259181 11259219 -171156023 + (TA)n Simple_repeat Simple_repeat 2 38 0 2287 105 0 0 chr6 11259219 11259523 -171155719 - AluSx SINE Alu -8 304 1 655 216 0 8 chr6 11259979 11260104 -171155138 - FLAM_C SINE Alu -18 125 2 2133 111 0 0 chr6 11260208 11260505 -171154737 - AluSx SINE Alu -15 297 1 406 227 9 18 chr6 11260538 11260648 -171154594 + L1ME4a LINE L1 5946 6054 -67 326 298 48 0 chr6 11261297 11261401 -171153841 - MER103 DNA DNA -45 121 13 864 149 6 43 chr6 11261412 11261573 -171153669 - AluJb SINE Alu -15 297 143 1911 147 0 7 chr6 11261666 11261965 -171153277 - AluJb SINE Alu -15 297 1 1696 264 27 10 chr6 11262651 11263136 -171152106 + L1ME2 LINE L1 124 616 -5780 434 203 16 47 chr6 11263188 11263244 -171151998 + L1ME2 LINE L1 2704 2760 -3455 2066 122 3 0 chr6 11263244 11263548 -171151694 + AluSx SINE Alu 1 305 -7 434 203 16 47 chr6 11263548 11263619 -171151623 + L1ME2 LINE L1 2760 2827 -3388 696 129 54 82 chr6 11263648 11263795 -171151447 + MSTB2 LTR MaLR 260 402 -55 1521 242 14 16 chr6 11263798 11264236 -171151006 + L1ME2 LINE L1 2843 3279 -2936 520 54 68 0 chr6 11264251 11264325 -171150917 - L1PA11 LINE L1 -1 6173 6095 1046 268 37 9 chr6 11264367 11264688 -171150554 + L1ME2 LINE L1 5381 5710 -525 383 237 32 0 chr6 11264688 11264781 -171150461 + MER82 DNA MER2_type 1 96 -557 274 164 36 0 chr6 11264911 11264966 -171150276 - L1M4 LINE L1 -3316 2830 2774 2126 91 7 16 chr6 11265081 11265388 -171149854 - AluSx SINE Alu -8 304 1 784 244 39 19 chr6 11265415 11265620 -171149622 + MER82 DNA MER2_type 444 652 -1 1264 246 48 50 chr6 11265621 11265714 -171149528 + L1ME2 LINE L1 5712 5804 -429 1406 145 130 0 chr6 11265714 11265976 -171149266 + AluSg1 SINE Alu 1 296 -13 1264 246 48 50 chr6 11265976 11266399 -171148843 + L1ME2 LINE L1 5804 6227 -6 1956 127 0 10 chr6 11266478 11266778 -171148464 + AluSx SINE Alu 1 297 -15 2311 94 0 0 chr6 11266816 11267125 -171148117 + AluY SINE Alu 1 309 -2 901 253 42 4 chr6 11267245 11267482 -171147760 - MIR SINE MIR 0 262 17 2026 120 10 0 chr6 11267502 11267803 -171147439 - AluSg SINE Alu -6 304 1 406 319 28 7 chr6 11267832 11267976 -171147266 - MIR SINE MIR -4 258 112 2879 215 25 25 chr6 11268227 11268911 -171146331 + L1MD3 LINE L1 7312 7995 0 2221 99 3 0 chr6 11269664 11269966 -171145276 + AluSq SINE Alu 1 303 -10 207 235 0 0 chr6 11270124 11270175 -171145067 + (CA)n Simple_repeat Simple_repeat 2 52 0 1707 127 21 25 chr6 11271485 11271768 -171143474 - AluSx SINE Alu -30 282 1 560 210 57 16 chr6 11272129 11272253 -171142989 + AluJo/FLAM SINE Alu 3 131 -171 1254 210 15 7 chr6 11272255 11272527 -171142715 + AluSq SINE Alu 1 274 -39 759 192 58 0 chr6 11272543 11272699 -171142543 + AluSq SINE Alu 134 298 -15 683 210 128 63 chr6 11272700 11273020 -171142222 - LTR12 LTR ERV1 -24 690 237 1771 204 275 33 chr6 11273173 11274012 -171141230 - pTR5 LTR ERV1 -266 2172 744 326 292 102 15 chr6 11274016 11274148 -171141094 - MIR SINE MIR -69 139 2 2217 100 0 0 chr6 11274370 11274669 -171140573 + AluSx SINE Alu 1 299 -13 1917 141 3 95 chr6 11275077 11275446 -171139796 - MER1B DNA MER1_type -1 336 2 271 307 99 61 chr6 11275961 11276094 -171139148 + MIR SINE MIR 2 147 -115 2328 141 15 15 chr6 11276094 11276484 -171138758 + MLT1B LTR MaLR 1 390 0 271 307 99 61 chr6 11276484 11276562 -171138680 + MIR SINE MIR 147 221 -41 281 198 23 23 chr6 11276730 11276816 -171138426 + (TA)n Simple_repeat Simple_repeat 1 86 0 5035 173 252 33 chr6 11277202 11278593 -171136649 + pTR5 LTR ERV1 743 2438 0 1510 150 59 7 chr6 11278692 11278979 -171136263 - AluSq SINE Alu -11 302 1 544 228 140 0 chr6 11278979 11279115 -171136127 + AluJo SINE Alu 117 271 -41 1014 198 32 40 chr6 11279126 11279373 -171135869 - MLT2B1 LTR ERVL -274 246 2 2117 95 17 7 chr6 11279394 11279688 -171135554 + AluSx SINE Alu 2 298 -14 2554 219 104 7 chr6 11280162 11280860 -171134382 + L1MD2 LINE L1 5589 6358 -1 815 174 12 12 chr6 11280872 11281033 -171134209 + FRAM SINE Alu 1 161 -15 187 264 125 28 chr6 11281034 11281106 -171134136 - MIR SINE MIR -111 151 73 1910 99 16 60 chr6 11281128 11281442 -171133800 - AluSx SINE Alu -8 304 5 751 192 83 19 chr6 11282005 11282161 -171133081 - AluJ SINE Alu -5 307 142 5360 195 69 76 chr6 11282161 11283743 -171131499 + pTR5 LTR ERV1 31 558 -156 349 318 39 8 chr6 11283758 11283887 -171131355 - AluJ SINE Alu -159 143 11 188 307 176 39 chr6 11284255 11284408 -171130834 - MIR SINE MIR -61 201 28 2113 99 3 7 chr6 11284461 11284763 -171130479 + AluY SINE Alu 1 301 -10 5698 100 27 17 chr6 11284812 11285634 -171129608 + L1PA11 LINE L1 5343 6172 -2 1551 136 97 13 chr6 11285658 11285967 -171129275 - MER46B DNA MER2_type 0 236 27 2173 94 0 10 chr6 11285967 11286266 -171128976 - AluSx SINE Alu -16 296 1 243 156 67 0 chr6 11286417 11286462 -171128780 - MER58 DNA MER1_type 0 2420 2373 1016 112 0 20 chr6 11286467 11286619 -171128623 - L1PA8 LINE L1 -3 6169 6021 605 284 70 96 chr6 11287269 11287647 -171127595 - ERVL LTR ERVL -2270 2726 2361 1972 119 7 7 chr6 11287647 11287941 -171127301 + AluSx SINE Alu 1 294 -18 605 284 70 96 chr6 11287941 11288019 -171127223 - ERVL LTR ERVL -2635 2361 2282 1734 301 50 26 chr6 11288099 11289229 -171126013 - ERVL LTR ERVL -2723 2273 1057 1284 231 104 27 chr6 11289229 11289641 -171125601 - MLT1C LTR MaLR 0 467 24 2336 289 48 11 chr6 11289698 11290428 -171124814 - ERVL LTR ERVL -3953 1043 287 776 129 8 0 chr6 11290948 11291072 -171124170 - L1M3 LINE L1 -730 5450 5326 647 163 8 47 chr6 11291072 11291100 -171124142 - FLAM_A SINE Alu -183 128 100 2282 113 80 0 chr6 11291100 11291437 -171123805 - THE1B LTR MaLR 0 364 1 647 163 8 47 chr6 11291437 11291537 -171123705 - FLAM_A SINE Alu -211 100 5 2489 175 6 219 chr6 11291537 11291748 -171123494 - L1M3 LINE L1 -813 5333 5079 1705 191 0 3 chr6 11291748 11292047 -171123195 + AluJb SINE Alu 1 298 -14 2489 175 6 219 chr6 11292047 11292515 -171122727 - L1M3 LINE L1 -1067 5079 4912 627 80 50 50 chr6 11292515 11292615 -171122627 - AluSg/x SINE Alu -22 288 189 2489 175 6 219 chr6 11292615 11293069 -171122173 - L1M3 LINE L1 -1234 4912 4363 351 98 0 0 chr6 11293269 11293330 -171121912 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 644 362 8 0 chr6 11293639 11293896 -171121346 + MERVL LTR ERVL 4180 4438 -1047 360 304 47 28 chr6 11294173 11294387 -171120855 + MERVL LTR ERVL 4810 5027 -458 268 289 103 0 chr6 11294852 11294949 -171120293 + LTR40a LTR ERVL 407 513 -6 545 353 40 15 chr6 11295279 11295551 -171119691 - ERVL LTR ERVL -4711 1053 775 1542 216 214 55 chr6 11295885 11296380 -171118862 + MLT1E1 LTR MaLR 1 598 -56 1987 118 14 0 chr6 11296380 11296667 -171118575 - AluSx SINE Alu -17 295 5 1542 216 214 55 chr6 11296667 11296735 -171118507 + MLT1E1 LTR MaLR 598 654 0 734 195 57 44 chr6 11296954 11297039 -171118203 - FAM SINE Alu -150 171 89 2185 141 102 8 chr6 11297039 11297089 -171118153 - MSTA LTR MaLR 0 428 384 204 40 0 0 chr6 11297089 11297114 -171118128 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 252 0 0 0 chr6 11297113 11297141 -171118101 + (GA)n Simple_repeat Simple_repeat 2 29 0 2185 141 102 8 chr6 11297114 11297481 -171117761 - MSTA LTR MaLR -44 384 1 734 195 57 44 chr6 11297481 11297554 -171117688 - FAM SINE Alu -232 89 11 1881 123 4 0 chr6 11297572 11297848 -171117394 - AluSx SINE Alu -15 297 21 362 246 94 94 chr6 11297901 11298153 -171117089 - LTR50 LTR ERVL -7 788 534 1489 216 56 50 chr6 11298153 11298265 -171116977 + MLT1C LTR MaLR 3 113 -354 2180 72 0 23 chr6 11298265 11298570 -171116672 + AluSc SINE Alu 1 298 -11 1489 216 56 50 chr6 11298570 11298919 -171116323 + MLT1C LTR MaLR 113 467 0 362 246 94 94 chr6 11298919 11298975 -171116267 - LTR50 LTR ERVL -260 535 480 1889 116 11 4 chr6 11299950 11300258 -171114984 - AluSx SINE Alu 0 316 7 2352 238 176 16 chr6 11300260 11301168 -171114074 - L2 LINE L2 -1929 1385 333 374 65 0 0 chr6 11301312 11301358 -171113884 - MLT1B LTR MaLR -46 344 299 1403 264 109 75 chr6 11301360 11301781 -171113461 + L2 LINE L2 1407 1812 -1502 1815 115 66 3 chr6 11301781 11302069 -171113173 - AluSg SINE Alu -2 308 3 1801 135 14 7 chr6 11302073 11302362 -171112880 - AluJb SINE Alu -20 292 2 1403 264 109 75 chr6 11302362 11302606 -171112636 + L2 LINE L2 1814 2100 -1214 1249 199 25 0 chr6 11302606 11302847 -171112395 + MLT1A1 LTR MaLR 116 362 -3 279 235 49 59 chr6 11302848 11302950 -171112292 + L2 LINE L2 2127 2227 -1087 1020 150 0 17 chr6 11303030 11303203 -171112039 - AluJo SINE Alu -14 298 129 904 71 11 44 chr6 11303203 11303291 -171111951 + (TTCC)n Simple_repeat Simple_repeat 1 262 0 904 71 11 44 chr6 11303291 11303474 -171111768 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 618 236 24 0 chr6 11303612 11303739 -171111503 - AluJo SINE Alu -172 130 1 328 284 161 7 chr6 11303842 11303997 -171111245 + L2 LINE L2 3135 3313 0 1946 125 10 10 chr6 11304099 11304226 -171111016 + AluSq SINE Alu 1 127 -186 186 43 0 0 chr6 11304226 11304249 -171110993 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1946 125 10 10 chr6 11304249 11304418 -171110824 + AluSq SINE Alu 126 297 -16 286 243 0 0 chr6 11304660 11304734 -171110508 - L1MC4 LINE L1 0 8042 7969 694 239 38 129 chr6 11305778 11305891 -171109351 - L1MC4 LINE L1 -259 7783 7661 5145 20 0 17 chr6 11305891 11306493 -171108749 + L1PA4 LINE L1 5561 6152 -3 694 239 38 129 chr6 11306493 11306852 -171108390 - L1MC4 LINE L1 -381 7661 7354 1126 196 222 73 chr6 11307201 11307625 -171107617 + MLT1D LTR MaLR 19 505 0 321 256 16 189 chr6 11307653 11307731 -171107511 + MIR SINE MIR 41 131 -131 1616 118 24 8 chr6 11307731 11307986 -171107256 - AluSx SINE Alu -10 302 44 321 256 16 189 chr6 11307986 11308056 -171107186 + MIR SINE MIR 131 211 -51 387 0 0 0 chr6 11308056 11308099 -171107143 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1641 161 0 37 chr6 11308101 11308399 -171106843 - AluJo SINE Alu -25 287 1 321 256 16 189 chr6 11308399 11308500 -171106742 + MIR SINE MIR 212 250 -12 394 241 23 0 chr6 11308565 11308652 -171106590 - L2 LINE L2 -97 3216 3128 1779 142 28 0 chr6 11308664 11308952 -171106290 - AluJb SINE Alu -16 296 1 1567 142 19 61 chr6 11309788 11309913 -171105329 + AluJo SINE Alu 1 130 -182 2228 88 0 0 chr6 11309913 11310207 -171105035 - AluSc SINE Alu -14 295 2 1567 142 19 61 chr6 11310207 11310391 -171104851 + AluJo SINE Alu 130 297 -15 1570 153 0 39 chr6 11310456 11310765 -171104477 - AluJo SINE Alu 0 309 12 2168 91 0 7 chr6 11310835 11311144 -171104098 + AluSg SINE Alu 1 307 -3 1801 125 43 0 chr6 11311244 11311523 -171103719 + AluJo SINE Alu 1 291 -21 2124 119 0 3 chr6 11311870 11312182 -171103060 - AluSx SINE Alu -1 311 1 252 296 0 0 chr6 11312495 11312620 -171102622 + (CA)n Simple_repeat Simple_repeat 1 125 0 4279 183 58 25 chr6 11313563 11314396 -171100846 - MER21B LTR ERV1 -3 860 1 286 274 113 9 chr6 11315016 11315122 -171100120 - L1ME LINE L1 -510 5611 5495 35 0 0 0 chr6 11315294 11315329 -171099913 + AT_rich Low_complexity Low_complexity 1 35 0 2311 98 9 0 chr6 11315329 11315647 -171099595 - LTR8 LTR ERV1 -104 587 267 279 271 65 77 chr6 11315647 11315957 -171099285 + L1MC4a LINE L1 5709 6016 -105 1726 166 0 14 chr6 11315976 11316260 -171098982 + AluJo SINE Alu 12 291 -21 623 164 9 0 chr6 11316453 11316563 -171098679 - L1MA9 LINE L1 0 6312 6202 340 154 0 39 chr6 11316586 11316664 -171098578 - L1MA9 LINE L1 -186 6126 6052 576 237 147 6 chr6 11316713 11316869 -171098373 - MER5A DNA MER1_type 0 189 12 2151 156 11 8 chr6 11318189 11318549 -171096693 + MLT1A1 LTR MaLR 1 361 -4 939 174 0 0 chr6 11318613 11318785 -171096457 + AluJb SINE Alu 133 304 -8 195 42 0 0 chr6 11318876 11318900 -171096342 + (A)n Simple_repeat Simple_repeat 1 24 0 354 241 42 125 chr6 11318939 11319155 -171096087 + L1MC4 LINE L1 7817 8014 -28 2057 107 3 7 chr6 11319488 11319779 -171095463 - AluSg SINE Alu -20 290 1 1992 122 14 0 chr6 11319947 11320234 -171095008 + AluSg SINE Alu 1 291 -19 1029 100 0 0 chr6 11320319 11320469 -171094773 + AluSg/x SINE Alu 154 303 -7 203 244 0 0 chr6 11320856 11320901 -171094341 - L2 LINE L2 -1 3312 3268 210 261 0 0 chr6 11321193 11321239 -171094003 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 2006 95 0 0 chr6 11321243 11321507 -171093735 - AluSx SINE Alu -12 300 37 1532 219 51 91 chr6 11321624 11321987 -171093255 - L1ME2 LINE L1 -10 6154 5821 2005 92 39 4 chr6 11321987 11322268 -171092974 - AluSx SINE Alu -21 291 1 1532 219 51 91 chr6 11322268 11322474 -171092768 - L1ME2 LINE L1 -343 5821 5608 1740 162 11 96 chr6 11322474 11322634 -171092608 - MER2 DNA MER2_type 0 345 173 775 138 0 0 chr6 11322634 11322750 -171092492 + L1PA16 LINE L1 6042 6157 -9 1740 162 11 96 chr6 11322750 11322966 -171092276 - MER2 DNA MER2_type -172 173 1 2202 103 0 7 chr6 11322994 11323296 -171091946 + AluSq SINE Alu 1 300 -13 1981 138 151 16 chr6 11323399 11323776 -171091466 + MSTA LTR MaLR 1 428 0 7931 18 0 0 chr6 11324468 11325450 -171089792 + L1PA4 LINE L1 5171 6152 -3 21 36 0 0 chr6 11325450 11325478 -171089764 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr6 11325564 11325597 -171089645 + (TG)n Simple_repeat Simple_repeat 2 34 0 2224 95 13 0 chr6 11326621 11326925 -171088317 - AluSp SINE Alu -5 308 1 529 259 36 18 chr6 11327448 11327614 -171087628 - MLT1K LTR MaLR -7 581 413 315 260 0 0 chr6 11327618 11327695 -171087547 + MER81 DNA DNA 1 77 -37 412 323 103 5 chr6 11327704 11327899 -171087343 - MLT1K LTR MaLR -164 424 211 1240 158 5 0 chr6 11327899 11328101 -171087141 + AluJo SINE Alu 1 203 -109 246 32 0 0 chr6 11328120 11328151 -171087091 + (A)n Simple_repeat Simple_repeat 1 31 0 1855 127 14 0 chr6 11328371 11328647 -171086595 + AluSx SINE Alu 32 311 -1 2077 115 20 0 chr6 11328957 11329253 -171085989 - AluSx SINE Alu -10 302 1 992 188 18 31 chr6 11329484 11329713 -171085529 + AluJo SINE Alu 87 312 0 2307 96 0 0 chr6 11329721 11330022 -171085220 + AluSx SINE Alu 3 303 -9 24 77 0 0 chr6 11330838 11330890 -171084352 + GC_rich Low_complexity Low_complexity 1 52 0 279 237 155 21 chr6 11332013 11332110 -171083132 + L2 LINE L2 3204 3313 0 22 56 0 0 chr6 11332233 11332269 -171082973 + AT_rich Low_complexity Low_complexity 1 36 0 210 309 0 53 chr6 11333216 11333310 -171081932 + MIR SINE MIR 58 146 -116 1784 154 17 3 chr6 11333910 11334203 -171081039 - AluSx SINE Alu -15 297 1 269 344 111 16 chr6 11334234 11334423 -171080819 + L2 LINE L2 2953 3159 -113 2229 165 52 19 chr6 11334457 11334882 -171080360 - L1MA6 LINE L1 0 6300 5862 346 357 21 17 chr6 11334982 11335217 -171080025 + MER58 DNA MER1_type 1 236 -105 21 91 0 0 chr6 11335417 11335461 -171079781 + GC_rich Low_complexity Low_complexity 1 44 0 1861 112 14 44 chr6 11335615 11335911 -171079331 - AluSx SINE Alu -24 288 2 515 150 0 79 chr6 11335911 11336038 -171079204 + Charlie5 DNA MER1_type 2508 2624 0 2193 99 3 10 chr6 11336089 11336393 -171078849 - AluSx SINE Alu -10 302 1 189 74 0 0 chr6 11336483 11336510 -171078732 + (A)n Simple_repeat Simple_repeat 1 27 0 646 236 29 0 chr6 11336691 11336831 -171078411 + AluJo SINE Alu 43 186 -126 23 54 0 0 chr6 11336920 11336957 -171078285 + GC_rich Low_complexity Low_complexity 1 37 0 35 41 0 0 chr6 11336974 11337023 -171078219 + GC_rich Low_complexity Low_complexity 1 49 0 2286 109 0 0 chr6 11388426 11388728 -171026514 - AluSx SINE Alu -10 302 1 970 253 90 66 chr6 11388729 11389202 -171026040 - L1MEd LINE L1 -3215 2914 2454 2361 105 3 0 chr6 11389202 11389507 -171025735 + AluSp SINE Alu 1 306 -7 970 253 90 66 chr6 11389507 11390014 -171025228 - L1MEd LINE L1 -3675 2454 1951 668 255 102 42 chr6 11390248 11390807 -171024435 - L1MEd LINE L1 -4726 1584 959 1143 327 70 15 chr6 11390945 11391734 -171023508 - L1 LINE L1 -1438 4708 3877 1068 126 37 37 chr6 11391751 11391942 -171023300 - L1MA9 LINE L1 -4 6308 6118 301 274 109 106 chr6 11392090 11392447 -171022795 + L1M2 LINE L1 772 1129 -5720 189 0 0 0 chr6 11392748 11392769 -171022473 + (TG)n Simple_repeat Simple_repeat 2 22 0 261 0 0 0 chr6 11392803 11392832 -171022410 + (TG)n Simple_repeat Simple_repeat 2 30 0 596 261 29 85 chr6 11393123 11393395 -171021847 + L2 LINE L2 3052 3308 -5 2021 141 0 10 chr6 11393903 11394209 -171021033 - AluSx SINE Alu -9 303 1 395 310 244 0 chr6 11395318 11395515 -171019727 + MIR SINE MIR 17 261 -1 1434 181 79 3 chr6 11395613 11395905 -171019337 - MER33 DNA MER1_type -4 320 7 1144 177 47 0 chr6 11396562 11396794 -171018448 + L1MA4 LINE L1 6054 6296 -4 372 308 84 11 chr6 11396936 11397097 -171018145 + MIR SINE MIR 20 192 -65 182 278 45 99 chr6 11397097 11397320 -171017922 + L2 LINE L2 2925 3135 -178 24 0 0 0 chr6 11397378 11397402 -171017840 + AT_rich Low_complexity Low_complexity 1 24 0 1023 110 0 0 chr6 11397720 11397891 -171017351 - AluSc SINE Alu 0 316 146 271 238 119 66 chr6 11398033 11398169 -171017073 - MIR SINE MIR -66 196 55 217 213 33 0 chr6 11398323 11398384 -171016858 + (TA)n Simple_repeat Simple_repeat 2 64 0 758 182 6 3 chr6 11398977 11399309 -171015933 + CT-rich Low_complexity Low_complexity 1 333 0 283 241 9 103 chr6 11400796 11400912 -171014330 + MER5A DNA MER1_type 40 144 -45 223 184 0 0 chr6 11401159 11401197 -171014045 + L2 LINE L2 3219 3256 -16 2166 94 0 4 chr6 11401197 11401508 -171013734 - AluSx SINE Alu 0 318 9 2172 108 0 7 chr6 11401527 11401835 -171013407 - AluSx SINE Alu 0 312 2 221 348 11 11 chr6 11403124 11403216 -171012026 - L2 LINE L2 -411 2902 2811 493 261 84 28 chr6 11403430 11403572 -171011670 + L2 LINE L2 3163 3312 -1 245 220 40 0 chr6 11403649 11403699 -171011543 + MER2 DNA MER2_type 294 345 0 205 315 157 9 chr6 11404064 11404172 -171011070 - MIR SINE MIR -57 151 28 556 290 113 27 chr6 11404309 11405236 -171010006 + L1ME3A LINE L1 4877 5950 -214 2274 60 3 7 chr6 11405444 11405782 -171009460 + AluY SINE Alu 1 337 0 1128 110 0 7 chr6 11405784 11405965 -171009277 + AluSg/x SINE Alu 129 308 0 816 183 0 71 chr6 11406371 11406540 -171008702 - FRAM SINE Alu -20 156 1 2365 99 0 0 chr6 11407087 11407389 -171007853 - AluSx SINE Alu -10 302 1 24 0 0 0 chr6 11407453 11407477 -171007765 + AT_rich Low_complexity Low_complexity 1 24 0 1619 171 96 56 chr6 11408168 11408648 -171006594 + L1MC5 LINE L1 7046 7544 -417 1488 136 0 0 chr6 11408690 11408903 -171006339 - AluSg/x SINE Alu -15 297 85 222 37 0 0 chr6 11409267 11409294 -171005948 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2323 157 123 26 chr6 11409314 11409778 -171005464 - LTR22 LTR ERVK 0 509 1 2026 96 0 4 chr6 11409778 11410048 -171005194 - AluSx SINE Alu -43 269 1 3041 147 4 7 chr6 11413809 11414273 -171000969 + L1PB3 LINE L1 5688 6150 -4 2214 96 0 0 chr6 11414289 11414571 -171000671 + AluSx SINE Alu 5 286 -26 2296 89 0 29 chr6 11414588 11414903 -171000339 + AluSp SINE Alu 1 306 -7 233 176 0 39 chr6 11415694 11415745 -170999497 + GA-rich Low_complexity Low_complexity 2 50 0 476 259 152 32 chr6 11416047 11416395 -170998847 + L1MEd LINE L1 562 951 -5168 416 240 32 19 chr6 11416420 11416574 -170998668 + L1MEd LINE L1 990 1145 -4974 2283 111 0 0 chr6 11416604 11416901 -170998341 - AluSx SINE Alu -15 297 1 1149 252 91 11 chr6 11416905 11417258 -170997984 + L1MC4a LINE L1 6411 6791 -1017 454 279 63 72 chr6 11417472 11417592 -170997650 - L1MEd LINE L1 -4539 1590 1471 2342 87 7 7 chr6 11417592 11417901 -170997341 - AluY SINE Alu -2 309 1 454 279 63 72 chr6 11417901 11418358 -170996884 - L1MEd LINE L1 -4658 1471 1094 2187 123 0 19 chr6 11418437 11418745 -170996497 + AluSq SINE Alu 1 302 -11 257 326 0 0 chr6 11418861 11418947 -170996295 + L1MC4 LINE L1 6952 7037 -1005 213 167 0 0 chr6 11418966 11419020 -170996222 + A-rich Low_complexity Low_complexity 1 54 0 2691 135 15 36 chr6 11419023 11419414 -170995828 - L1MA8 LINE L1 -2 6289 5908 2078 136 0 19 chr6 11419414 11419722 -170995520 - AluSx SINE Alu -10 302 1 2691 135 15 36 chr6 11419722 11419803 -170995439 - L1MA8 LINE L1 -383 5908 5827 225 83 0 28 chr6 11419804 11419840 -170995402 + L1MA8 LINE L1 5782 5816 -475 873 275 106 13 chr6 11419875 11420177 -170995065 + L2 LINE L2 2984 3313 0 288 257 22 44 chr6 11420192 11420328 -170994914 - L2 LINE L2 -629 2685 2553 343 276 89 8 chr6 11420407 11420530 -170994712 - L3 LINE CR1 -109 1468 1336 2141 128 0 7 chr6 11420612 11420916 -170994326 - AluSx SINE Alu -10 302 1 710 285 88 53 chr6 11420949 11421324 -170993918 + MLT1K LTR MaLR 185 572 -16 2506 82 0 0 chr6 11421331 11421634 -170993608 + AluSx SINE Alu 1 303 -9 237 268 24 37 chr6 11421649 11421731 -170993511 - L3 LINE CR1 -267 1310 1230 198 286 77 22 chr6 11421757 11421848 -170993394 - L3 LINE CR1 -6 1571 1476 2326 105 3 6 chr6 11422466 11422780 -170992462 - AluSq SINE Alu 0 313 1 1916 108 73 14 chr6 11422780 11423067 -170992175 - AluSx SINE Alu -8 304 1 1479 143 4 39 chr6 11423288 11423567 -170991675 - L1MC3 LINE L1 -3 7782 7514 2681 130 28 35 chr6 11423569 11423597 -170991645 + L1MB1 LINE L1 5579 5606 -583 2345 87 0 19 chr6 11423597 11423909 -170991333 + AluSx SINE Alu 3 308 -4 2681 130 28 35 chr6 11423909 11424243 -170990999 + L1MB1 LINE L1 5606 5940 -249 1941 143 0 3 chr6 11424243 11424530 -170990712 + AluJb SINE Alu 11 296 -16 2681 130 28 35 chr6 11424530 11424627 -170990615 + L1MB1 LINE L1 5940 6036 -153 2325 102 3 0 chr6 11424766 11425069 -170990173 - AluSp SINE Alu -9 304 1 24 32 0 0 chr6 11425899 11425930 -170989312 + AT_rich Low_complexity Low_complexity 1 31 0 2292 84 0 29 chr6 11426025 11426333 -170988909 - AluSc SINE Alu -10 299 1 828 253 42 35 chr6 11426333 11426784 -170988458 - L1ME LINE L1 -5086 984 531 1082 277 28 52 chr6 11427051 11427330 -170987912 - L1ME LINE L1 -5651 419 152 1823 114 103 4 chr6 11427330 11427601 -170987641 - AluSx SINE Alu -14 298 1 1082 277 28 52 chr6 11427601 11427747 -170987495 - L1ME LINE L1 -5918 152 4 4795 43 33 41 chr6 11427917 11428970 -170986272 + MER11A LTR ERVK 1 1266 0 772 221 27 72 chr6 11429604 11429826 -170985416 + L2 LINE L2 2208 2419 -895 1287 139 23 59 chr6 11429826 11430117 -170985125 + MER52C LTR ERV1 91 506 -772 269 209 0 47 chr6 11430117 11430265 -170984977 + C-rich Low_complexity Low_complexity 3 143 0 2089 122 20 10 chr6 11430396 11430531 -170984711 + AluSq SINE Alu 1 133 -180 2267 81 42 0 chr6 11430531 11430816 -170984426 + AluSg1 SINE Alu 1 297 -12 2089 122 20 10 chr6 11430816 11430983 -170984259 + AluSq SINE Alu 133 306 -7 485 327 108 35 chr6 11430984 11431382 -170983860 + L3 LINE CR1 995 1421 -156 704 323 48 20 chr6 11431400 11431753 -170983489 - L2 LINE L2 -4 3309 2947 2140 164 25 3 chr6 11431781 11432133 -170983109 + MLT2C1 LTR ERVL 1 480 -40 332 117 6 17 chr6 11432218 11432246 -170982996 + MLT2B1 LTR ERVL 474 474 -46 438 20 0 0 chr6 11432246 11432297 -170982945 + (CA)n Simple_repeat Simple_repeat 2 52 0 332 117 6 17 chr6 11432297 11432339 -170982903 + MLT2B1 LTR ERVL 474 515 -5 2359 104 0 0 chr6 11432587 11432894 -170982348 + AluSc SINE Alu 1 307 -2 2199 101 13 16 chr6 11432910 11433218 -170982024 + AluSp SINE Alu 1 307 -6 1354 207 45 25 chr6 11433940 11434253 -170980989 + MLT2C2 LTR ERVL 120 481 -39 1542 159 3 28 chr6 11434253 11434543 -170980699 - L1MA3 LINE L1 -225 6080 5798 2225 114 0 3 chr6 11434552 11434858 -170980384 - AluSq SINE Alu -8 305 1 4465 182 32 23 chr6 11434858 11434956 -170980286 - L1MC3 LINE L1 -10 7775 7679 2433 132 67 5 chr6 11434956 11435359 -170979883 - MSTA LTR MaLR 0 428 1 4465 182 32 23 chr6 11435359 11436148 -170979094 - L1MC3 LINE L1 -106 7679 6876 2551 174 42 33 chr6 11436148 11436525 -170978717 + MER66B LTR ERV1 1 384 -102 2123 111 10 0 chr6 11436525 11436814 -170978428 + AluSx SINE Alu 1 292 -20 2551 174 42 33 chr6 11436814 11436918 -170978324 + MER66B LTR ERV1 384 486 0 4465 182 32 23 chr6 11436918 11436990 -170978252 - L1MC3 LINE L1 -909 6876 6806 21 36 0 0 chr6 11437311 11437339 -170977903 + AT_rich Low_complexity Low_complexity 1 28 0 2218 97 24 0 chr6 11437665 11437955 -170977287 + AluY SINE Alu 1 297 -14 2381 93 0 10 chr6 11437964 11438274 -170976968 + AluSx SINE Alu 1 307 -5 273 267 139 10 chr6 11438288 11438389 -170976853 + L2 LINE L2 3193 3306 -7 730 201 18 18 chr6 11439047 11439211 -170976031 - FAM SINE Alu -11 164 1 21 0 0 0 chr6 11440293 11440314 -170974928 + AT_rich Low_complexity Low_complexity 1 21 0 358 161 138 0 chr6 11440440 11440527 -170974715 - MER53 DNA DNA -4 185 87 7481 136 26 11 chr6 11440530 11441205 -170974037 + Tigger3b DNA MER2_type 4 667 -2361 3864 68 4 19 chr6 11441205 11441721 -170973521 + L1PA8 LINE L1 5652 6159 -13 246 32 0 0 chr6 11441722 11441753 -170973489 + (TA)n Simple_repeat Simple_repeat 2 32 0 7481 136 26 11 chr6 11441753 11441998 -170973244 + Tigger3b DNA MER2_type 667 907 -2121 2330 117 0 0 chr6 11441998 11442307 -170972935 - AluSp SINE Alu -4 309 1 7481 136 26 11 chr6 11442307 11442593 -170972649 + Tigger3b DNA MER2_type 907 1231 0 563 129 0 0 chr6 11442596 11442681 -170972561 - MER53 DNA DNA -104 85 1 576 324 138 20 chr6 11442800 11443144 -170972098 + L2 LINE L2 1801 2103 -1211 1127 184 29 19 chr6 11443144 11443280 -170971962 + MER3 DNA MER1_type 1 141 -68 1586 161 97 7 chr6 11443280 11443559 -170971683 - AluSx SINE Alu -8 304 1 1127 184 29 19 chr6 11443559 11443629 -170971613 + MER3 DNA MER1_type 141 209 0 576 324 138 20 chr6 11443629 11443938 -170971304 + L2 LINE L2 2103 2531 -783 1094 147 28 0 chr6 11443946 11444114 -170971128 - MER41-int LTR ERV1 -801 6617 3308 * 1108 136 12 0 chr6 11444113 11444275 -170970967 - MER41-int LTR ERV1 -1361 6057 5894 722 157 64 0 chr6 11444272 11444418 -170970824 - MER41-int LTR ERV1 -1242 4588 3616 * 687 206 24 41 chr6 11444443 11444613 -170970629 - LTR9 LTR ERV1 0 612 446 666 267 61 58 chr6 11444621 11444829 -170970413 + L2 LINE L2 2529 2735 -579 2256 94 14 3 chr6 11444829 11445126 -170970116 + AluSq SINE Alu 1 300 -13 2400 75 0 3 chr6 11445126 11445419 -170969823 + AluY SINE Alu 1 292 -19 666 267 61 58 chr6 11445419 11445486 -170969756 + L2 LINE L2 2734 2806 -508 1821 134 144 0 chr6 11445554 11445853 -170969389 - Ricksha DNA DNA -2896 350 9 287 188 26 145 chr6 11446274 11446354 -170968888 + MIR SINE MIR 160 248 -14 396 0 0 0 chr6 11446354 11446398 -170968844 + (TA)n Simple_repeat Simple_repeat 2 45 0 2080 125 0 46 chr6 11446402 11446729 -170968513 - AluJb SINE Alu 0 312 1 287 188 26 145 chr6 11446729 11446760 -170968482 + MIR SINE MIR 251 262 0 1453 183 29 18 chr6 11447228 11447538 -170967704 - AluJo SINE Alu 0 313 1 706 251 96 9 chr6 11449709 11449928 -170965314 + MIR SINE MIR 19 256 -6 1170 47 0 0 chr6 11451143 11451272 -170963970 + AluSp SINE Alu 4 132 -181 2287 109 3 0 chr6 11451274 11451585 -170963657 + AluSx SINE Alu 1 312 0 721 219 133 34 chr6 11452053 11452286 -170962956 - MIR SINE MIR -2 260 5 2216 112 0 7 chr6 11452814 11453110 -170962132 - AluSc SINE Alu -15 294 1 454 212 12 0 chr6 11453120 11453205 -170962037 + MER58B DNA MER1_type 207 292 -49 2190 123 3 0 chr6 11454466 11454775 -170960467 + AluSp SINE Alu 1 310 -3 230 186 10 157 chr6 11455136 11455238 -170960004 + MARNA DNA Mariner 276 362 -224 2255 88 3 0 chr6 11455640 11455950 -170959292 - AluSp SINE Alu 0 311 1 489 34 0 0 chr6 11456044 11456103 -170959139 + (TG)n Simple_repeat Simple_repeat 1 59 0 1978 103 47 23 chr6 11456766 11457066 -170958176 - AluSg SINE Alu -3 307 1 2329 77 10 3 chr6 11457673 11457971 -170957271 - AluSc SINE Alu -9 300 1 199 71 48 0 chr6 11458202 11458244 -170956998 + A-rich Low_complexity Low_complexity 3 46 0 1924 122 30 16 chr6 11458705 11459104 -170956138 + AluJb SINE Alu 5 407 0 2317 85 9 31 chr6 11459780 11460099 -170955143 - AluSx SINE Alu 0 312 1 626 279 65 14 chr6 11460814 11461029 -170954213 - MIR SINE MIR -20 242 17 25 0 0 0 chr6 11461120 11461145 -170954097 + AT_rich Low_complexity Low_complexity 1 25 0 2191 107 0 38 chr6 11461172 11461378 -170953864 - AluSc SINE Alu 0 309 118 2441 84 0 7 chr6 11461378 11461686 -170953556 - AluY SINE Alu -5 306 1 2191 107 0 38 chr6 11461686 11461798 -170953444 - AluSc SINE Alu -191 118 3 232 250 0 0 chr6 11461827 11461871 -170953371 + L2 LINE L2 3246 3289 -24 262 240 0 0 chr6 11462566 11462616 -170952626 - MER20 DNA MER1_type 0 219 170 302 298 70 26 chr6 11463008 11463222 -170952020 + MLT1K LTR MaLR 378 609 -6 1195 204 14 0 chr6 11463222 11463438 -170951804 + MER20 DNA MER1_type 1 219 0 204 147 0 0 chr6 11463913 11463947 -170951295 - L2 LINE L2 -1316 1998 1965 895 228 58 111 chr6 11464139 11464305 -170950937 + MLT1A2 LTR MaLR 1 174 -200 2289 105 7 3 chr6 11464305 11464610 -170950632 + AluSx SINE Alu 6 311 -1 895 228 58 111 chr6 11464610 11464838 -170950404 + MLT1A2 LTR MaLR 174 374 0 1872 143 11 3 chr6 11465399 11465686 -170949556 - AluJo SINE Alu -22 290 2 2197 99 7 7 chr6 11466428 11466720 -170948522 - AluSq SINE Alu -21 292 1 1965 156 0 7 chr6 11467241 11467542 -170947700 + AluJb SINE Alu 1 299 -13 452 200 10 150 chr6 11468066 11468266 -170946976 + MER5B DNA MER1_type 6 177 -1 1985 131 28 3 chr6 11468797 11469080 -170946162 - AluSx SINE Alu -20 292 3 601 96 0 0 chr6 11469353 11469436 -170945806 + AluS SINE Alu 2 84 -229 3122 68 47 9 chr6 11469436 11469861 -170945381 + LTR10D LTR ERV1 1 441 -72 23 0 0 0 chr6 11470654 11470677 -170944565 + AT_rich Low_complexity Low_complexity 1 23 0 232 250 140 30 chr6 11470677 11470777 -170944465 + L2 LINE L2 3154 3264 -8 282 198 0 34 chr6 11471466 11471590 -170943652 + MER5A DNA MER1_type 6 189 0 2180 91 35 0 chr6 11471842 11472129 -170943113 + AluSp SINE Alu 1 297 -16 222 253 121 10 chr6 11472349 11472448 -170942794 - MIR SINE MIR -10 252 143 1867 155 14 0 chr6 11472544 11472834 -170942408 + AluJo SINE Alu 3 296 -16 461 224 65 77 chr6 11472922 11473168 -170942074 + L2 LINE L2 2883 3125 -188 204 378 63 0 chr6 11473318 11473429 -170941813 - L2 LINE L2 -788 2526 2409 522 70 0 0 chr6 11473455 11473526 -170941716 + (CA)n Simple_repeat Simple_repeat 2 72 0 180 0 0 0 chr6 11473701 11473721 -170941521 + (A)n Simple_repeat Simple_repeat 1 20 0 6157 134 41 10 chr6 11474018 11475220 -170940022 + L1MA5 LINE L1 4713 5972 -328 2191 119 3 0 chr6 11475220 11475523 -170939719 + AluSq SINE Alu 1 304 -9 6157 134 41 10 chr6 11475523 11475854 -170939388 + L1MA5 LINE L1 5972 6292 -8 2176 97 3 3 chr6 11475980 11476270 -170938972 + AluSg SINE Alu 1 290 -20 260 266 0 130 chr6 11476699 11476745 -170938497 + MIR SINE MIR 104 154 -108 2635 52 0 3 chr6 11476745 11477055 -170938187 + AluSc SINE Alu 1 309 0 260 266 0 130 chr6 11477055 11477177 -170938065 + MIR SINE MIR 154 250 -12 245 245 50 50 chr6 11477364 11477503 -170937739 + MER5B DNA MER1_type 10 148 -30 2337 75 3 3 chr6 11478426 11478718 -170936524 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr6 11478913 11478935 -170936307 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2310 86 3 0 chr6 11480037 11480329 -170934913 - AluSp SINE Alu -20 293 1 208 310 46 46 chr6 11480445 11480532 -170934710 - MIR3 SINE MIR -10 198 112 2314 71 7 3 chr6 11481339 11481636 -170933606 - AluSq SINE Alu -15 298 1 27 19 0 57 chr6 11481681 11481734 -170933508 + AT_rich Low_complexity Low_complexity 1 50 0 1774 161 10 43 chr6 11481799 11482104 -170933138 + AluSx SINE Alu 1 295 -17 2126 116 20 0 chr6 11482630 11482922 -170932320 - AluSq SINE Alu -12 301 4 391 260 68 73 chr6 11483499 11483691 -170931551 + MIR SINE MIR 2 192 -70 2366 80 3 13 chr6 11483854 11484165 -170931077 - AluSp SINE Alu -5 308 1 1033 88 0 0 chr6 11486632 11486769 -170928473 - AluY SINE Alu -5 306 170 314 45 0 0 chr6 11487891 11487935 -170927307 + L1M2 LINE L1 5588 5631 -669 14174 197 33 29 chr6 11488185 11488573 -170926669 - L1P5 LINE L1 -718 6149 5764 2125 123 0 3 chr6 11488573 11488866 -170926376 - AluSp SINE Alu -17 296 5 14174 197 33 29 chr6 11488866 11489476 -170925766 - L1P5 LINE L1 -1103 5764 5157 2309 98 3 13 chr6 11489476 11489783 -170925459 - AluSx SINE Alu -8 304 1 14174 197 33 29 chr6 11489783 11491444 -170923798 - L1P5 LINE L1 -1710 5157 3503 2300 91 0 10 chr6 11491444 11491740 -170923502 + AluSx SINE Alu 1 293 -19 14174 197 33 29 chr6 11491740 11492826 -170922416 - L1P5 LINE L1 -3364 3503 2422 964 122 0 0 chr6 11492826 11492965 -170922277 + AluY SINE Alu 173 311 0 14174 197 33 29 chr6 11492965 11493271 -170921971 - L1P5 LINE L1 -4445 2422 2118 2453 80 3 0 chr6 11493271 11493571 -170921671 - AluSc SINE Alu -8 301 1 14174 197 33 29 chr6 11493571 11494706 -170920536 - L1P5 LINE L1 -4749 2118 691 765 226 123 57 chr6 11494706 11494943 -170920299 - LTR36 LTR ERV1 -151 460 240 231 61 0 0 chr6 11494943 11494976 -170920266 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2060 108 18 0 chr6 11494976 11495254 -170919988 - AluSx SINE Alu -29 283 1 765 226 123 57 chr6 11495254 11495347 -170919895 - LTR36 LTR ERV1 -370 241 107 560 53 0 0 chr6 11495349 11495424 -170919818 - L1PA11 LINE L1 0 6174 6100 312 85 0 0 chr6 11495461 11495508 -170919734 - L1PA11 LINE L1 -21 6153 6107 456 45 76 0 chr6 11495568 11495634 -170919608 - L1PA11 LINE L1 0 6174 6104 5660 65 39 0 chr6 11495659 11496447 -170918795 - L1PA11 LINE L1 -34 6140 5322 2466 51 3 3 chr6 11496448 11496742 -170918500 - AluY SINE Alu -17 294 1 212 0 36 0 chr6 11496755 11496783 -170918459 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 319 167 229 0 chr6 11496786 11496882 -170918360 - LTR36 LTR ERV1 -491 120 3 189 279 49 16 chr6 11496976 11497037 -170918205 - MIR SINE MIR -80 182 120 1385 66 0 0 chr6 11497203 11497370 -170917872 - AluY SINE Alu -12 299 133 980 147 0 138 chr6 11497503 11497829 -170917413 - MER33 DNA MER1_type 0 324 44 2129 102 0 0 chr6 11498118 11498393 -170916849 - AluSg SINE Alu -7 303 29 2501 67 0 3 chr6 11498409 11498721 -170916521 - AluY SINE Alu 0 311 1 24 32 0 0 chr6 11499156 11499187 -170916055 + AT_rich Low_complexity Low_complexity 1 31 0 2701 71 37 0 chr6 11499735 11500086 -170915156 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr6 11501014 11501035 -170914207 + AT_rich Low_complexity Low_complexity 1 21 0 2202 129 0 3 chr6 11501510 11501813 -170913429 - AluSx SINE Alu -5 307 6 7828 70 9 42 chr6 11502077 11503184 -170912058 - MER11C LTR ERVK 0 1071 1 21 0 0 0 chr6 11503300 11503321 -170911921 + AT_rich Low_complexity Low_complexity 1 21 0 1290 208 4 0 chr6 11503340 11503571 -170911671 - AluJo SINE Alu -76 236 5 1837 137 81 0 chr6 11503643 11503928 -170911314 - AluSq SINE Alu -5 308 1 23 0 0 0 chr6 11504251 11504274 -170910968 + AT_rich Low_complexity Low_complexity 1 23 0 2213 106 6 22 chr6 11504390 11504702 -170910540 + AluSx SINE Alu 1 307 -5 1857 147 7 0 chr6 11505634 11505920 -170909322 + AluJb SINE Alu 7 294 -18 2119 131 0 0 chr6 11506420 11506717 -170908525 + AluJb SINE Alu 1 297 -15 2273 110 0 0 chr6 11507499 11507791 -170907451 - AluSx SINE Alu -20 292 1 915 187 111 0 chr6 11507939 11508137 -170907105 - MER58A DNA MER1_type -4 220 1 774 222 62 0 chr6 11508145 11508321 -170906921 - MER5A DNA MER1_type 0 189 3 2009 136 7 3 chr6 11509134 11509421 -170905821 + AluSx SINE Alu 1 288 -24 932 207 8 68 chr6 11510189 11510256 -170904986 - MER58A DNA MER1_type -2196 224 155 1779 109 109 7 chr6 11510256 11510530 -170904712 - AluSg SINE Alu -6 304 3 932 207 8 68 chr6 11510530 11510699 -170904543 - MER58A DNA MER1_type -2265 155 2 202 179 18 18 chr6 11510756 11510812 -170904430 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2154 91 42 0 chr6 11510952 11511237 -170904005 + AluSx SINE Alu 1 297 -15 12955 188 43 20 chr6 11511249 11513576 -170901666 + L1MA9 LINE L1 3462 5909 -1822 2052 141 0 0 chr6 11513576 11513873 -170901369 + AluY SINE Alu 1 297 -14 12955 188 43 20 chr6 11513873 11515499 -170899743 + L1MA9 LINE L1 5909 7497 -234 295 221 0 0 chr6 11515505 11515573 -170899669 + L1MA9 LINE L1 7600 7667 -64 7221 29 17 7 chr6 11515753 11517041 -170898201 + L1PA4 LINE L1 4855 6151 -4 337 327 81 54 chr6 11518252 11518475 -170896767 - L1ME3A LINE L1 -15 6138 5910 1181 270 100 26 chr6 11518507 11519347 -170895895 - L1ME3A LINE L1 -216 5937 5030 912 232 72 78 chr6 11519351 11519443 -170895799 - L1MEd LINE L1 -3127 3002 2911 2403 88 3 7 chr6 11519443 11519751 -170895491 - AluSx SINE Alu -5 307 1 912 232 72 78 chr6 11519751 11520225 -170895017 - L1MEd LINE L1 -3218 2911 2442 2386 104 3 0 chr6 11520225 11520532 -170894710 + AluSp SINE Alu 1 308 -5 912 232 72 78 chr6 11520532 11520932 -170894310 - L1MEd LINE L1 -3687 2442 2041 468 259 102 42 chr6 11521277 11521833 -170893409 - L1MEd LINE L1 -4729 1581 959 1165 264 105 86 chr6 11521968 11522777 -170892465 - L1M4 LINE L1 -1438 4708 3916 1623 165 32 21 chr6 11522777 11523117 -170892125 - L1MA9 LINE L1 -4 6308 5965 1165 264 105 86 chr6 11523117 11524247 -170890995 - L1M4 LINE L1 -2230 3916 2732 258 214 131 96 chr6 11524372 11524601 -170890641 - L1M4 LINE L1 -3755 2391 2155 314 263 15 22 chr6 11524870 11525007 -170890235 - L1M4 LINE L1 -3279 2867 2732 1455 188 12 4 chr6 11525441 11525696 -170889546 - AluJb SINE Alu -55 257 1 252 246 18 0 chr6 11525793 11525850 -170889392 + L2 LINE L2 3255 3312 -1 1941 151 10 7 chr6 11525879 11526183 -170889059 + AluJb SINE Alu 1 305 -7 200 220 140 0 chr6 11527077 11527127 -170888115 + L3 LINE CR1 1429 1485 -92 21 0 0 0 chr6 11527531 11527552 -170887690 + AT_rich Low_complexity Low_complexity 1 21 0 996 254 166 15 chr6 11528369 11528767 -170886475 - L2 LINE L2 0 3313 2856 398 264 236 0 chr6 11530383 11530565 -170884677 + MIR SINE MIR 18 242 -20 2174 112 60 65 chr6 11531015 11531372 -170883870 + L1MA9 LINE L1 5851 6208 -104 925 125 0 23 chr6 11531372 11531500 -170883742 - FLAM_C SINE Alu -8 125 1 2174 112 60 65 chr6 11531500 11531563 -170883679 + L1MA9 LINE L1 6208 6271 -41 1784 191 0 7 chr6 11531563 11531866 -170883376 - AluJo SINE Alu -11 301 1 2174 112 60 65 chr6 11531866 11531907 -170883335 + L1MA9 LINE L1 6271 6311 -1 1813 164 0 17 chr6 11532267 11532554 -170882688 + AluJo SINE Alu 1 282 -30 2316 157 82 17 chr6 11532893 11533295 -170881947 - MSTA LTR MaLR 0 428 1 2528 145 19 10 chr6 11533907 11534320 -170880922 + L1MB4 LINE L1 5764 6180 0 2574 71 3 0 chr6 11534325 11534635 -170880607 + AluSp SINE Alu 1 311 -2 2265 100 0 7 chr6 11535531 11535832 -170879410 + AluSq SINE Alu 1 299 -14 2197 188 70 26 chr6 11537227 11537727 -170877515 - Charlie1b DNA MER1_type -1 522 1 2442 68 7 0 chr6 11538699 11538993 -170876249 - AluY SINE Alu -14 297 2 199 329 14 43 chr6 11539051 11539121 -170876121 - L2 LINE L2 -2 3311 3244 1042 177 39 0 chr6 11539121 11539302 -170875940 - MER46A DNA MER2_type 0 236 49 44 0 0 0 chr6 11539302 11539346 -170875896 + AT_rich Low_complexity Low_complexity 1 44 0 897 287 74 67 chr6 11539558 11540224 -170875018 - L2 LINE L2 -265 3048 2310 2084 127 3 0 chr6 11540568 11540896 -170874346 + AluSq SINE Alu 1 329 0 665 256 123 37 chr6 11540898 11541222 -170874020 + L1M4 LINE L1 3730 4081 -2065 184 174 0 65 chr6 11541306 11541352 -170873890 + MER5B DNA MER1_type 123 165 -13 349 289 77 37 chr6 11541385 11541710 -170873532 + L1ME4a LINE L1 3073 3410 -2736 731 259 109 79 chr6 11541769 11542192 -170873050 + L1ME4a LINE L1 3333 3781 -2365 378 0 0 0 chr6 11542192 11542234 -170873008 + (TG)n Simple_repeat Simple_repeat 2 43 0 731 259 109 79 chr6 11542234 11542427 -170872815 + L1ME4a LINE L1 3781 3967 -2179 823 305 185 36 chr6 11542549 11543517 -170871725 - L2 LINE L2 -2041 1273 162 388 283 165 40 chr6 11544062 11544096 -170871146 + L1ME4a LINE L1 5617 5645 -476 2565 46 0 13 chr6 11544096 11544401 -170870841 - AluY SINE Alu -10 301 1 388 283 165 40 chr6 11544401 11544638 -170870604 + L1ME4a LINE L1 5645 5922 -199 546 327 143 35 chr6 11544690 11545174 -170870068 - L2 LINE L2 -30 3283 2756 555 284 170 46 chr6 11545263 11545675 -170869567 - L2 LINE L2 -800 2514 2052 226 167 0 0 chr6 11545683 11545719 -170869523 + U2 snRNA snRNA 1 36 -152 2287 87 0 7 chr6 11545927 11546225 -170869017 + AluSc SINE Alu 14 309 0 213 244 0 24 chr6 11546383 11546420 -170868822 + (TA)n Simple_repeat Simple_repeat 2 38 -43 1924 123 34 3 chr6 11546420 11546713 -170868529 - AluSq SINE Alu -11 302 1 213 244 0 24 chr6 11546713 11546757 -170868485 + (TA)n Simple_repeat Simple_repeat 38 81 0 276 276 126 10 chr6 11546763 11546956 -170868286 - L1MC/D LINE L1 -302 5819 5663 754 254 44 128 chr6 11547122 11547426 -170867816 - MLT1J LTR MaLR -14 497 256 789 167 0 43 chr6 11547426 11547564 -170867678 - FLAM_C SINE Alu 0 133 2 754 254 44 128 chr6 11547564 11547799 -170867443 - MLT1J LTR MaLR -255 256 3 2102 114 7 0 chr6 11547992 11548272 -170866970 + AluSx SINE Alu 5 286 -26 2069 133 0 0 chr6 11549150 11549436 -170865806 - AluSg1 SINE Alu -23 286 1 2170 102 3 7 chr6 11549828 11550123 -170865119 - AluSx SINE Alu -18 294 1 207 221 44 29 chr6 11550526 11550594 -170864648 - L2 LINE L2 -212 3060 2992 322 314 91 43 chr6 11551056 11551266 -170863976 - L2 LINE L2 -9 3263 3044 4496 112 26 9 chr6 11551857 11552512 -170862730 - L1PA16 LINE L1 -13 6153 5488 252 0 0 0 chr6 11553016 11553044 -170862198 + (TA)n Simple_repeat Simple_repeat 2 29 0 2391 94 3 0 chr6 11553044 11553352 -170861890 - AluSx SINE Alu -3 309 1 278 210 25 118 chr6 11553728 11553795 -170861447 - MER102a DNA MER1_type -1088 329 276 1889 106 92 21 chr6 11553795 11554077 -170861165 + AluSx SINE Alu 1 302 -10 278 210 25 118 chr6 11554077 11554128 -170861114 - MER102a DNA MER1_type -1141 276 222 25 0 0 0 chr6 11555772 11555797 -170859445 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 11556012 11556047 -170859195 + AT_rich Low_complexity Low_complexity 1 35 0 2222 120 0 0 chr6 11558753 11559053 -170856189 - AluSx SINE Alu -10 302 3 21638 31 10 2 chr6 11559098 11562357 -170852885 - L1PA3 LINE L1 -1 6154 2881 2297 104 3 0 chr6 11563026 11563325 -170851917 + AluSp SINE Alu 7 306 -7 2149 95 50 0 chr6 11564108 11564391 -170850851 + AluSq SINE Alu 1 297 -16 340 154 77 0 chr6 11565991 11566056 -170849186 + MIR SINE MIR 173 242 -20 350 291 93 7 chr6 11566131 11566282 -170848960 + MIR SINE MIR 69 232 -30 419 259 56 62 chr6 11567145 11567246 -170847996 - MER112 DNA MER1_type -1 259 157 2358 65 0 0 chr6 11567246 11567560 -170847682 + AluSc SINE Alu 1 314 0 419 259 56 62 chr6 11567560 11567619 -170847623 - MER112 DNA MER1_type -103 157 99 805 176 0 0 chr6 11567650 11567769 -170847473 + FLAM_C SINE Alu 2 120 -23 1808 142 0 62 chr6 11568421 11568746 -170846496 - AluSx SINE Alu -7 305 1 738 174 0 0 chr6 11568807 11568922 -170846320 + FRAM SINE Alu 53 167 -9 2454 88 0 3 chr6 11568923 11569229 -170846013 + AluSq SINE Alu 1 305 -8 240 234 0 16 chr6 11569229 11569293 -170845949 - MER112 DNA MER1_type -181 79 17 2004 94 8 4 chr6 11571160 11571426 -170843816 + AluY SINE Alu 35 301 -10 526 101 0 0 chr6 11571436 11571505 -170843737 + AluS SINE Alu 3 71 -242 2092 76 0 0 chr6 11571506 11571757 -170843485 + AluSq SINE Alu 41 291 -22 700 234 101 102 chr6 11571835 11572586 -170842656 - L1MC5 LINE L1 -50 7911 7238 392 268 109 45 chr6 11572577 11572637 -170842605 - L1MC4 LINE L1 -760 7201 7146 * 2376 125 105 20 chr6 11572637 11573029 -170842213 + MSTB LTR MaLR 1 425 -1 392 268 109 45 chr6 11573029 11574119 -170841123 - L1MC4 LINE L1 -815 7146 5990 2358 89 0 0 chr6 11574119 11574411 -170840831 - AluSg SINE Alu -17 293 2 392 268 109 45 chr6 11574411 11574709 -170840533 - L1MC4 LINE L1 -1971 5990 5712 373 336 0 42 chr6 11575437 11575580 -170839662 + L2 LINE L2 3134 3270 -2 261 386 0 11 chr6 11575577 11575665 -170839577 - MIR SINE MIR -105 103 17 * 963 259 95 30 chr6 11576619 11576955 -170838287 + L2 LINE L2 2526 2883 -431 186 207 52 17 chr6 11576942 11577000 -170838242 + L2 LINE L2 3005 3064 -249 * 228 278 74 97 chr6 11577579 11577795 -170837447 - MIR SINE MIR -18 244 34 4077 39 2 2 chr6 11577879 11578345 -170836897 - L1PA8 LINE L1 -4 6168 5703 2163 111 0 3 chr6 11578538 11578835 -170836407 + AluSx SINE Alu 1 296 -16 209 227 0 0 chr6 11579128 11579172 -170836070 + T-rich Low_complexity Low_complexity 1 44 0 328 314 51 0 chr6 11579460 11579578 -170835664 + MIR3 SINE MIR 79 202 -6 2115 128 0 0 chr6 11579615 11579912 -170835330 + AluSx SINE Alu 1 297 -15 373 261 54 23 chr6 11580607 11580737 -170834505 - MIR SINE MIR -94 168 35 649 210 6 60 chr6 11581749 11581916 -170833326 - MIR SINE MIR -10 252 95 2490 158 35 26 chr6 11581938 11582401 -170832841 + MLT1C LTR MaLR 1 467 0 345 308 48 0 chr6 11583790 11583894 -170831348 - L2 LINE L2 0 3272 3164 1083 120 87 22 chr6 11583972 11584238 -170831004 - MER44D DNA MER2_type -36 669 1 616 338 86 19 chr6 11584263 11584698 -170830544 - L2 LINE L2 -236 3036 2590 2384 97 0 0 chr6 11584762 11585060 -170830182 - AluSg SINE Alu -12 298 1 2435 75 0 7 chr6 11585821 11586126 -170829116 + AluY SINE Alu 1 303 -8 255 274 102 59 chr6 11587501 11587687 -170827555 - L2 LINE L2 0 3313 3120 469 288 52 69 chr6 11588509 11588742 -170826500 + MER115 DNA AcHobo 1 229 -464 715 224 14 5 chr6 11588869 11589007 -170826235 + L1ME1 LINE L1 5522 5664 -501 1494 135 9 0 chr6 11589007 11589248 -170825994 + AluSg/x SINE Alu 73 315 0 715 224 14 5 chr6 11589248 11589275 -170825967 + L1ME1 LINE L1 5664 5689 -476 1486 155 71 7 chr6 11589642 11589938 -170825304 + L1ME1 LINE L1 5670 5984 -182 469 302 11 0 chr6 11589952 11590131 -170825111 + L1MEc LINE L1 1615 1795 -4601 317 247 0 37 chr6 11590839 11590920 -170824322 + CT-rich Low_complexity Low_complexity 3 80 0 265 241 0 0 chr6 11591615 11591669 -170823573 + Tigger8 DNA MER2_type 32 85 -581 341 231 188 17 chr6 11591930 11592047 -170823195 - MIR SINE MIR -14 248 112 437 194 279 30 chr6 11592480 11592645 -170822597 + L2 LINE L2 3108 3313 0 2130 164 47 28 chr6 11592807 11593276 -170821966 + Looper DNA T2_type 89 566 -992 519 239 197 0 chr6 11593277 11593419 -170821823 - MER5A DNA MER1_type -11 178 9 558 310 146 22 chr6 11593724 11594127 -170821115 - L3 LINE CR1 -495 1082 630 183 42 0 0 chr6 11594469 11594493 -170820749 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2091 118 7 0 chr6 11594495 11594782 -170820460 - AluSx SINE Alu -23 289 1 242 316 36 42 chr6 11595814 11596026 -170819216 + L2 LINE L2 2779 2991 -281 21 57 0 0 chr6 11596446 11596481 -170818761 + AT_rich Low_complexity Low_complexity 1 35 0 181 308 154 0 chr6 11598840 11598931 -170816311 - MIR SINE MIR -97 165 61 891 100 76 0 chr6 11601613 11601824 -170813418 - L1MA8 LINE L1 -7 6284 6011 717 311 56 28 chr6 11602130 11602452 -170812790 - L3 LINE CR1 -50 1527 1197 350 312 150 23 chr6 11602587 11602760 -170812482 - L3 LINE CR1 -396 1181 987 556 250 17 72 chr6 11603472 11603652 -170811590 - MIR SINE MIR -22 240 71 1066 170 22 36 chr6 11603763 11603987 -170811255 + AluJb SINE Alu 87 307 -5 509 275 50 27 chr6 11604023 11604230 -170811012 + MIR SINE MIR 41 249 -13 493 179 82 30 chr6 11604670 11604804 -170810438 + MIR SINE MIR 116 256 -6 2456 71 0 3 chr6 11605221 11605530 -170809712 - AluY SINE Alu -3 308 1 665 293 168 25 chr6 11605738 11606665 -170808577 - L1ME2 LINE L1 -214 5950 4877 205 315 157 9 chr6 11606802 11606910 -170808332 + MIR SINE MIR 28 151 -57 180 0 0 0 chr6 11607081 11607101 -170808141 + (A)n Simple_repeat Simple_repeat 1 20 0 245 220 40 0 chr6 11607276 11607326 -170807916 - MER2 DNA MER2_type 0 345 294 493 261 84 28 chr6 11607403 11607545 -170807697 - L2 LINE L2 -1 3312 3163 221 348 11 11 chr6 11607759 11607851 -170807391 + L2 LINE L2 2811 2902 -411 2172 108 0 7 chr6 11609140 11609448 -170805794 + AluSx SINE Alu 2 312 0 2167 94 0 4 chr6 11609467 11609778 -170805464 + AluSx SINE Alu 9 318 0 223 184 0 0 chr6 11609778 11609816 -170805426 - L2 LINE L2 -16 3256 3219 283 241 9 103 chr6 11610063 11610179 -170805063 - MER5A DNA MER1_type -45 144 40 758 182 6 3 chr6 11611666 11611998 -170803244 + GA-rich Low_complexity Low_complexity 1 333 0 217 213 33 0 chr6 11612591 11612652 -170802590 + (TA)n Simple_repeat Simple_repeat 1 63 0 271 238 119 66 chr6 11612806 11612942 -170802300 + MIR SINE MIR 55 196 -66 1024 110 0 0 chr6 11613084 11613255 -170801987 + AluSc SINE Alu 146 316 0 24 0 0 0 chr6 11613573 11613597 -170801645 + AT_rich Low_complexity Low_complexity 1 24 0 182 278 45 99 chr6 11613655 11613878 -170801364 - L2 LINE L2 -178 3135 2925 372 308 84 11 chr6 11613878 11614039 -170801203 - MIR SINE MIR -65 143 20 1144 177 47 0 chr6 11614181 11614413 -170800829 - L1MA4 LINE L1 -4 6296 6054 1434 181 79 3 chr6 11615070 11615362 -170799880 + MER33 DNA MER1_type 7 320 -4 395 310 244 0 chr6 11615460 11615657 -170799585 - MIR SINE MIR -1 261 17 2021 141 0 10 chr6 11616766 11617072 -170798170 + AluSx SINE Alu 1 303 -9 596 261 29 85 chr6 11617580 11617852 -170797390 - L2 LINE L2 -5 3308 3052 261 0 0 0 chr6 11618143 11618172 -170797070 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr6 11618206 11618227 -170797015 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 274 109 106 chr6 11618528 11618885 -170796357 - L1M2 LINE L1 -5720 1129 772 210 288 8 40 chr6 11619072 11619197 -170796045 + C-rich Low_complexity Low_complexity 6 126 0 23 54 0 0 chr6 11619257 11619294 -170795948 + GC_rich Low_complexity Low_complexity 1 37 0 2225 98 3 10 chr6 11619871 11620177 -170795065 + AluJb SINE Alu 4 307 -5 564 264 43 6 chr6 11620530 11620693 -170794549 + MIR SINE MIR 62 230 -32 429 238 67 0 chr6 11620829 11620934 -170794308 - L2 LINE L2 -1 3271 3160 225 260 0 68 chr6 11621453 11621526 -170793716 - MER5A DNA MER1_type -115 74 7 2318 96 0 0 chr6 11621963 11622256 -170792986 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr6 11622256 11622277 -170792965 + AT_rich Low_complexity Low_complexity 1 21 0 950 234 56 9 chr6 11623358 11623572 -170791670 + MER58A DNA MER1_type 1 224 0 27 49 0 0 chr6 11623749 11623790 -170791452 + AT_rich Low_complexity Low_complexity 1 41 0 3796 159 18 35 chr6 11623829 11624672 -170790570 - L1PB4 LINE L1 -7 6165 5354 2183 125 0 3 chr6 11624672 11624969 -170790273 + AluSg SINE Alu 1 296 -14 3796 159 18 35 chr6 11624969 11625429 -170789813 - L1PB4 LINE L1 -818 5354 4888 578 307 33 37 chr6 11625440 11625681 -170789561 - L2 LINE L2 -243 3070 2831 22 0 0 0 chr6 11625997 11626019 -170789223 + AT_rich Low_complexity Low_complexity 1 22 0 2166 114 7 0 chr6 11626548 11626846 -170788396 - AluSx SINE Alu -12 300 1 539 241 0 9 chr6 11626847 11626955 -170788287 - FLAM_A SINE Alu -28 114 8 2390 91 0 7 chr6 11627221 11627528 -170787714 + AluSq SINE Alu 1 305 -8 1302 109 171 0 chr6 11627802 11627995 -170787247 + MER30 DNA MER1_type 4 229 -1 468 239 79 65 chr6 11628144 11628321 -170786921 - MIR SINE MIR -62 146 21 2413 190 114 44 chr6 11628689 11628991 -170786251 - L1MC5 LINE L1 -33 7928 7649 2230 114 0 0 chr6 11628991 11629288 -170785954 + AluSx SINE Alu 1 297 -15 2413 190 114 44 chr6 11629288 11629810 -170785432 - L1MC5 LINE L1 -312 7649 7046 24 0 0 0 chr6 11630501 11630525 -170784717 + AT_rich Low_complexity Low_complexity 1 24 0 2365 99 0 0 chr6 11630589 11630891 -170784351 + AluSx SINE Alu 1 302 -10 816 183 0 71 chr6 11631438 11631607 -170783635 + FRAM SINE Alu 1 156 -20 2000 113 0 34 chr6 11632013 11632196 -170783046 - AluSx SINE Alu 0 308 120 438 36 0 0 chr6 11632196 11632252 -170782990 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 2312 53 3 7 chr6 11632252 11632534 -170782708 - AluY SINE Alu -30 281 1 2000 113 0 34 chr6 11632534 11632667 -170782575 - AluSx SINE Alu -186 122 1 2234 78 32 0 chr6 11632946 11633227 -170782015 - AluY SINE Alu -21 290 1 267 239 0 0 chr6 11633265 11633311 -170781931 - AluSp SINE Alu -122 181 136 2298 90 7 3 chr6 11633707 11634007 -170781235 + AluSc SINE Alu 1 301 -8 2416 73 0 13 chr6 11634051 11634366 -170780876 - AluY SINE Alu 0 311 1 2510 62 0 3 chr6 11634417 11634721 -170780521 + AluY SINE Alu 1 303 -8 5653 212 38 38 chr6 11634907 11635432 -170779810 - L1M LINE L1 -748 5398 4875 1829 129 0 0 chr6 11635432 11635680 -170779562 - AluSx SINE Alu -19 293 46 5653 212 38 38 chr6 11635680 11636583 -170778659 - L1M LINE L1 -1271 4875 3991 2152 121 10 10 chr6 11636583 11636888 -170778354 + AluSq SINE Alu 1 305 -8 5653 212 38 38 chr6 11636888 11637042 -170778200 - L1M LINE L1 -2155 3991 3839 779 211 17 0 chr6 11637034 11637214 -170778028 - L1M4 LINE L1 -3139 3007 2825 * 1380 249 51 24 chr6 11637237 11637651 -170777591 + L1M4 LINE L1 3286 3710 -2436 373 123 0 0 chr6 11637645 11637702 -170777540 - L1MEc LINE L1 -3435 2780 2724 * 1016 275 56 13 chr6 11637772 11638146 -170777096 - L1MEc LINE L1 -4351 2045 1656 752 264 59 76 chr6 11638217 11638619 -170776623 + MLT1H LTR MaLR 39 461 -88 255 282 145 17 chr6 11638625 11638742 -170776500 - MER97b DNA MER1_type? -917 136 5 2138 114 7 3 chr6 11638821 11639111 -170776131 + AluSx SINE Alu 1 291 -21 2234 120 13 0 chr6 11639119 11639418 -170775824 + AluSx SINE Alu 1 303 -9 258 260 64 81 chr6 11640192 11640365 -170774877 + LTR16A LTR ERVL 52 221 -229 392 197 137 17 chr6 11640406 11640523 -170774719 + LTR16A LTR ERVL 320 450 0 1718 188 55 6 chr6 11640537 11640867 -170774375 + MLT1A1 LTR MaLR 20 365 0 796 153 164 56 chr6 11640946 11641214 -170774028 - L1MC5 LINE L1 -176 7785 7489 384 275 215 0 chr6 11641356 11641556 -170773686 - MIR SINE MIR -18 244 2 1077 274 72 26 chr6 11642992 11643379 -170771863 + MLT1I LTR MaLR 1 405 -4 21 57 0 0 chr6 11643553 11643588 -170771654 + AT_rich Low_complexity Low_complexity 1 35 0 2478 77 3 7 chr6 11644173 11644483 -170770759 + AluY SINE Alu 1 309 -2 1678 195 76 11 chr6 11644688 11645057 -170770185 - MSTD LTR MaLR 0 396 4 2053 118 3 26 chr6 11645149 11645455 -170769787 + AluSx SINE Alu 1 299 -13 2195 132 0 0 chr6 11646081 11646392 -170768850 - AluSx SINE Alu -1 311 1 2354 117 27 46 chr6 11646962 11647126 -170768116 + THE1B LTR MaLR 1 167 -197 2069 135 10 3 chr6 11647126 11647430 -170767812 - AluSq SINE Alu -7 306 1 2354 117 27 46 chr6 11647430 11647634 -170767608 + THE1B LTR MaLR 167 362 -2 2279 64 19 45 chr6 11647634 11647947 -170767295 + AluY SINE Alu 1 305 -6 201 311 0 0 chr6 11648073 11648134 -170767108 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 254 253 169 0 chr6 11648328 11648411 -170766831 - MER5A DNA MER1_type -83 106 10 307 210 328 36 chr6 11648785 11648920 -170766322 + MER112 DNA MER1_type 1 95 -161 2285 112 3 0 chr6 11648920 11649215 -170766027 - AluSp SINE Alu -17 296 1 307 210 328 36 chr6 11649215 11649274 -170765968 + MER112 DNA MER1_type 95 252 -4 1951 128 3 3 chr6 11649379 11649661 -170765581 - AluSx SINE Alu -12 300 19 676 204 26 0 chr6 11649881 11650033 -170765209 + MIR SINE MIR 2 157 -105 1780 125 93 3 chr6 11650033 11650322 -170764920 - MER46B DNA MER2_type -3 233 44 210 217 0 0 chr6 11650340 11650386 -170764856 + MIR SINE MIR 153 198 -64 582 239 60 16 chr6 11652044 11652228 -170763014 + Charlie7 DNA MER1_type 53 244 -2368 240 209 15 30 chr6 11652329 11652396 -170762846 + Charlie7 DNA MER1_type 1520 1585 -1027 1010 258 59 7 chr6 11652435 11652722 -170762520 - LTR16A LTR ERVL 0 450 149 2039 136 51 20 chr6 11652854 11653206 -170762036 + MLT1A1 LTR MaLR 3 365 0 1084 228 49 137 chr6 11653206 11653398 -170761844 + Charlie7 DNA MER1_type 1653 1860 -752 1436 120 0 5 chr6 11653398 11653615 -170761627 - L1PA14 LINE L1 0 6161 5946 1084 228 49 137 chr6 11653615 11653754 -170761488 + Charlie7 DNA MER1_type 1860 1918 -694 461 196 52 0 chr6 11653754 11653851 -170761391 + U13 snRNA snRNA 1 102 -2 1084 228 49 137 chr6 11653851 11654074 -170761168 + Charlie7 DNA MER1_type 1918 2159 -453 1038 164 91 34 chr6 11654076 11654284 -170760958 + AluJo SINE Alu 87 306 -6 2386 234 79 60 chr6 11654359 11654446 -170760796 - MER21B LTR ERV1 -58 805 721 1921 121 67 0 chr6 11654446 11654728 -170760514 - AluSg SINE Alu -9 301 1 2386 234 79 60 chr6 11654728 11655391 -170759851 - MER21B LTR ERV1 -142 721 37 2695 122 46 2 chr6 11655391 11655801 -170759441 - MSTA LTR MaLR 0 428 1 2386 234 79 60 chr6 11655801 11655821 -170759421 - MER21B LTR ERV1 -826 37 19 499 203 0 0 chr6 11655843 11655922 -170759320 - MER21B LTR ERV1 -773 90 12 249 256 47 54 chr6 11655933 11656062 -170759180 + Charlie7 DNA MER1_type 2199 2326 -286 1302 218 124 30 chr6 11656069 11656186 -170759056 + MLT1C LTR MaLR 1 106 -361 2351 97 3 3 chr6 11656186 11656495 -170758747 - AluSq SINE Alu -4 309 1 1302 218 124 30 chr6 11656495 11656804 -170758438 + MLT1C LTR MaLR 106 467 0 317 184 197 7 chr6 11657193 11657340 -170757902 + Charlie7 DNA MER1_type 2397 2571 -41 2197 102 10 3 chr6 11657843 11658137 -170757105 - AluSq SINE Alu -17 296 1 605 276 124 18 chr6 11658404 11658629 -170756613 + MLT2F LTR ERVL 1 249 -414 1807 181 83 39 chr6 11658667 11659098 -170756144 + MLT1C LTR MaLR 18 467 0 1038 316 17 44 chr6 11659098 11659503 -170755739 + MLT2F LTR ERVL 263 656 -7 2126 119 14 3 chr6 11659569 11659862 -170755380 + AluSx SINE Alu 1 296 -16 284 306 132 36 chr6 11659892 11659996 -170755246 - MIR SINE MIR -12 250 157 2524 140 0 65 chr6 11659996 11660245 -170754997 - Tigger2a DNA MER2_type -2274 434 227 2311 106 0 6 chr6 11660245 11660556 -170754686 + AluSg SINE Alu 2 310 0 2524 140 0 65 chr6 11660556 11660770 -170754472 - Tigger2a DNA MER2_type -2481 227 1 284 306 132 36 chr6 11660770 11660884 -170754358 - MIR SINE MIR -105 157 11 2260 107 0 3 chr6 11661202 11661500 -170753742 + AluSx SINE Alu 2 298 -14 429 269 100 19 chr6 11661633 11661793 -170753449 + MER112 DNA MER1_type 66 238 -22 3643 162 15 126 chr6 11661793 11663321 -170751921 + pTR5 LTR ERV1 761 2606 0 2743 48 0 0 chr6 11664049 11664360 -170750882 - AluY SINE Alu 0 311 1 2076 159 14 44 chr6 11664507 11664664 -170750578 + MLT1A1 LTR MaLR 1 161 -204 1961 157 3 6 chr6 11664664 11664976 -170750266 + AluJb SINE Alu 1 311 -1 2076 159 14 44 chr6 11664976 11665182 -170750060 + MLT1A1 LTR MaLR 161 353 -12 249 83 0 0 chr6 11665189 11665225 -170750017 + (TA)n Simple_repeat Simple_repeat 2 37 0 2131 120 0 10 chr6 11665404 11665704 -170749538 - AluSx SINE Alu -15 297 1 216 268 0 18 chr6 11665713 11665769 -170749473 - MER5B DNA MER1_type -120 58 4 1550 147 13 0 chr6 11665769 11665994 -170749248 + AluJb SINE Alu 6 233 -79 2145 117 24 0 chr6 11666164 11666455 -170748787 - AluSx SINE Alu -14 298 1 495 220 15 23 chr6 11666495 11666627 -170748615 - MER5B DNA MER1_type -47 131 1 773 276 131 8 chr6 11666645 11667003 -170748239 + L2 LINE L2 2910 3311 -2 2382 91 10 0 chr6 11667051 11667360 -170747882 - AluSx SINE Alu 0 312 1 24 103 0 0 chr6 11668885 11668972 -170746270 + GC_rich Low_complexity Low_complexity 1 87 0 201 288 0 30 chr6 11670029 11670082 -170745160 + (TATG)n Simple_repeat Simple_repeat 4 56 -11 2168 104 0 36 chr6 11670082 11670391 -170744851 - AluSq SINE Alu -15 298 1 201 288 0 30 chr6 11670391 11670403 -170744839 + (TATG)n Simple_repeat Simple_repeat 56 67 0 1619 138 28 16 chr6 11670868 11671122 -170744120 - MER1B DNA MER1_type 0 339 83 431 96 27 41 chr6 11671349 11671422 -170743820 - MLT1B LTR MaLR -2 388 317 2217 100 30 0 chr6 11671431 11671730 -170743512 - AluSp SINE Alu -5 308 1 1114 84 7 7 chr6 11671735 11671878 -170743364 - AluSp SINE Alu -170 143 1 1528 140 92 54 chr6 11671884 11672113 -170743129 - MLT1B LTR MaLR -63 327 81 2003 129 0 39 chr6 11672113 11672424 -170742818 + AluSq SINE Alu 1 299 -14 1528 140 92 54 chr6 11672424 11672509 -170742733 - MLT1B LTR MaLR -309 81 1 300 321 60 74 chr6 11672957 11673168 -170742074 + L2 LINE L2 1790 1997 -1317 2093 135 3 3 chr6 11673168 11673472 -170741770 - AluSq SINE Alu -9 304 1 300 321 60 74 chr6 11673472 11673559 -170741683 + L2 LINE L2 1997 2084 -1230 258 322 66 0 chr6 11673789 11673910 -170741332 + L2 LINE L2 2152 2280 -1034 2331 86 0 0 chr6 11673922 11674212 -170741030 - AluSc SINE Alu -19 290 1 662 207 53 24 chr6 11674212 11674372 -170740870 + L2 LINE L2 3146 3313 0 2329 106 0 0 chr6 11674788 11675099 -170740143 - AluY SINE Alu 0 311 1 1339 261 94 39 chr6 11675267 11675981 -170739261 - HAL1 LINE L1 -710 1797 1045 193 279 33 0 chr6 11676031 11676092 -170739150 + MIR SINE MIR 61 123 -139 2661 113 49 58 chr6 11676195 11676479 -170738763 - LTR26B LTR ERV1 -49 482 202 2199 104 7 3 chr6 11676479 11676777 -170738465 - AluSg SINE Alu -11 299 1 2661 113 49 58 chr6 11676777 11676978 -170738264 - LTR26B LTR ERV1 -329 202 1 844 210 51 5 chr6 11677204 11677492 -170737750 - MER93b LTR ERV1 0 373 40 * 3989 164 40 8 chr6 11677484 11678189 -170737053 - MER50 LTR ERV1 -7 727 1 8043 118 3 2 chr6 11678190 11679354 -170735888 - MER50-int LTR ERV1 -8 7197 3880 259 308 135 19 chr6 11680227 11680383 -170734859 - MER50-int LTR ERV1 -1926 6331 6158 1148 302 84 68 chr6 11680544 11682064 -170733178 - MER50-int LTR ERV1 -885 6206 4526 9858 190 31 58 chr6 11682075 11686440 -170728802 - MER50-int LTR ERV1 -3173 3918 15 3214 123 21 12 chr6 11686446 11686957 -170728285 - MER50 LTR ERV1 -218 516 1 2114 126 7 3 chr6 11686998 11687292 -170727950 - AluSx SINE Alu -17 295 1 1672 188 143 70 chr6 11687296 11687545 -170727697 - L1ME1 LINE L1 -203 5963 5734 2124 90 0 74 chr6 11687545 11687857 -170727385 - AluSx SINE Alu -10 302 14 1672 188 143 70 chr6 11687857 11688314 -170726928 - L1ME1 LINE L1 -432 5734 5190 2165 129 0 3 chr6 11688314 11688616 -170726626 - AluSx SINE Alu -11 301 1 1672 188 143 70 chr6 11688616 11688685 -170726557 - L1ME1 LINE L1 -976 5190 5127 2215 96 0 7 chr6 11688707 11688999 -170726243 - AluSx SINE Alu -2 310 21 1418 234 79 62 chr6 11689002 11689326 -170725916 - L1ME1 LINE L1 -1940 4206 3866 2312 118 0 3 chr6 11689326 11689639 -170725603 - AluSx SINE Alu 0 312 1 1418 234 79 62 chr6 11689639 11689922 -170725320 - L1ME1 LINE L1 -2280 3866 3589 1773 200 209 3 chr6 11689934 11690404 -170724838 - MLT1E1 LTR MaLR 0 654 103 2360 102 0 6 chr6 11690411 11690726 -170724516 - AluSp SINE Alu 0 313 1 2166 126 7 3 chr6 11690748 11691058 -170724184 - AluSx SINE Alu -1 311 1 462 235 84 0 chr6 11691060 11691179 -170724063 - MLT1E1 LTR MaLR -464 129 1 1399 247 88 15 chr6 11691186 11691709 -170723533 - L1ME1 LINE L1 -2573 3573 3013 1352 84 0 0 chr6 11691719 11691897 -170723345 - AluSc SINE Alu 0 309 132 2379 54 9 47 chr6 11691897 11692214 -170723028 - AluYa5 SINE Alu -6 305 1 693 204 43 48 chr6 11692256 11692486 -170722756 - L1ME1 LINE L1 -3200 2946 2718 1968 125 48 0 chr6 11692486 11692775 -170722467 - AluSx SINE Alu -9 303 1 979 110 0 0 chr6 11692775 11692902 -170722340 - AluSq/x SINE Alu -178 135 9 327 271 76 0 chr6 11692903 11693021 -170722221 - L1ME1 LINE L1 -3406 2740 2614 189 345 36 64 chr6 11693196 11693306 -170721936 - L2 LINE L2 -24 3289 3183 621 238 92 5 chr6 11693512 11693697 -170721545 - MIR SINE MIR -6 256 56 197 83 28 0 chr6 11693984 11694020 -170721222 + (TC)n Simple_repeat Simple_repeat 1 37 0 191 255 16 136 chr6 11694029 11694112 -170721130 - L2 LINE L2 -1006 2308 2257 2396 68 0 0 chr6 11694112 11694408 -170720834 + AluY SINE Alu 1 296 -15 191 255 16 136 chr6 11694408 11694508 -170720734 - L2 LINE L2 -1057 2257 2147 2486 131 3 29 chr6 11694981 11695356 -170719886 - MLT1A1 LTR MaLR 0 365 1 200 286 82 20 chr6 11695457 11695555 -170719687 + MIR SINE MIR 64 167 -95 355 216 72 79 chr6 11696865 11697004 -170718238 - MER5B DNA MER1_type -17 161 24 804 159 8 0 chr6 11697666 11697792 -170717450 + FLAM_C SINE Alu 1 127 -16 1122 122 37 0 chr6 11698413 11698602 -170716640 - L1MA5 LINE L1 -2 6298 6103 5895 112 27 26 chr6 11698607 11699535 -170715707 - L1MA3 LINE L1 0 6305 5377 * 17975 148 30 32 chr6 11699525 11699735 -170715507 - L1M1 LINE L1 -4510 3055 2846 2277 88 0 53 chr6 11699735 11700053 -170715189 + AluSx SINE Alu 1 301 -11 2242 101 0 24 chr6 11700053 11700351 -170714891 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr6 11700356 11700379 -170714863 + (CAA)n Simple_repeat Simple_repeat 2 24 0 17975 148 30 32 chr6 11700379 11700780 -170714462 - L1M1 LINE L1 -4722 2843 2443 2344 101 0 0 chr6 11700780 11701087 -170714155 - AluSg SINE Alu -3 307 1 17975 148 30 32 chr6 11701087 11702194 -170713048 - L1M1 LINE L1 -5122 2443 1336 2161 120 45 58 chr6 11702194 11702553 -170712689 - THE1A LTR MaLR 0 355 2 17975 148 30 32 chr6 11702553 11702568 -170712674 - L1M1 LINE L1 -6229 1336 1322 303 29 0 0 chr6 11702568 11702603 -170712639 - THE1A LTR MaLR -320 35 1 17975 148 30 32 chr6 11702603 11703873 -170711369 - L1M1 LINE L1 -6243 1322 13 2948 134 15 11 chr6 11703867 11704343 -170710899 - L1MA4 LINE L1 -239 6061 5584 * 842 158 51 6 chr6 11704346 11704523 -170710719 - L1MA4 LINE L1 -1267 4879 4695 189 0 0 0 chr6 11705007 11705028 -170710214 + (CAA)n Simple_repeat Simple_repeat 2 22 0 235 254 0 0 chr6 11705035 11705090 -170710152 + LTR67 LTR ERVL 13 67 -490 21 0 0 0 chr6 11706058 11706079 -170709163 + AT_rich Low_complexity Low_complexity 1 21 0 4824 177 27 21 chr6 11706088 11707681 -170707561 + L1MB7 LINE L1 4562 6165 -19 216 237 62 82 chr6 11707730 11707827 -170707415 - MIR SINE MIR -4 258 164 224 367 76 0 chr6 11708917 11708996 -170706246 + L2 LINE L2 3150 3234 -38 21 82 0 0 chr6 11709014 11709063 -170706179 + AT_rich Low_complexity Low_complexity 1 49 0 3844 157 45 5 chr6 11709641 11710289 -170704953 + HsTC2 DNA Tc2 1 674 -1224 1622 175 93 8 chr6 11710287 11710653 -170704589 + HsTC2 DNA Tc2 1328 1900 0 * 207 291 191 33 chr6 11713946 11714156 -170701086 - L2 LINE L2 -2129 1185 943 316 302 137 88 chr6 11714672 11715469 -170699773 - L2 LINE L2 -338 2976 2141 1504 141 120 86 chr6 11715475 11715641 -170699601 + MSTD LTR MaLR 1 160 -236 1967 74 0 0 chr6 11715641 11715883 -170699359 - AluSx SINE Alu -15 297 56 1504 141 120 86 chr6 11715883 11716098 -170699144 + MSTD LTR MaLR 160 395 -1 1912 166 67 52 chr6 11716103 11716474 -170698768 + MSTB1 LTR MaLR 5 384 -48 2487 81 0 0 chr6 11716474 11716783 -170698459 + AluSc SINE Alu 1 309 0 1912 166 67 52 chr6 11716783 11716832 -170698410 + MSTB1 LTR MaLR 384 431 -1 314 350 94 0 chr6 11717071 11717231 -170698011 - L2 LINE L2 -685 2629 2455 295 228 166 0 chr6 11717334 11717449 -170697793 + MIR SINE MIR 38 173 -63 459 141 0 0 chr6 11717550 11717628 -170697614 + (TTC)n Simple_repeat Simple_repeat 2 79 0 2198 121 10 0 chr6 11717633 11717940 -170697302 - AluSx SINE Alu -2 310 1 287 375 180 0 chr6 11717991 11718191 -170697051 + L2 LINE L2 2332 2567 -747 638 179 32 8 chr6 11718262 11718385 -170696857 + MIR SINE MIR 107 232 -30 374 236 16 55 chr6 11719451 11719578 -170695664 + MER94 DNA DNA 1 122 -12 2319 97 3 7 chr6 11719835 11720143 -170695099 - AluSx SINE Alu -5 307 1 424 218 23 68 chr6 11721393 11721526 -170693716 + MER5A DNA MER1_type 33 159 -30 1189 182 129 53 chr6 11721551 11721840 -170693402 + MLT1B LTR MaLR 6 328 -62 2426 82 0 7 chr6 11721840 11722144 -170693098 - AluSp SINE Alu -11 302 1 1189 182 129 53 chr6 11722144 11722211 -170693031 + MLT1B LTR MaLR 328 389 -1 1586 107 61 61 chr6 11722437 11722698 -170692544 + AluSg SINE Alu 44 304 -6 413 280 103 71 chr6 11722711 11723053 -170692189 + LTR67 LTR ERVL 114 474 -83 1644 155 54 4 chr6 11723053 11723330 -170691912 - AluJb SINE Alu -21 291 1 413 280 103 71 chr6 11723330 11723412 -170691830 + LTR67 LTR ERVL 474 552 -5 484 128 26 26 chr6 11723424 11723541 -170691701 + CT-rich Low_complexity Low_complexity 1 117 0 1958 101 9 75 chr6 11723801 11724119 -170691123 - AluSq SINE Alu -15 298 2 254 242 32 38 chr6 11724223 11724350 -170690892 - L1 LINE L1 -1089 5057 4933 439 317 91 55 chr6 11724375 11724813 -170690429 - L1MEd LINE L1 -5654 465 12 2134 104 16 0 chr6 11725035 11725342 -170689900 - AluSx SINE Alu 0 312 1 220 211 0 0 chr6 11725594 11725646 -170689596 + T-rich Low_complexity Low_complexity 5 56 0 303 286 49 70 chr6 11726550 11726735 -170688507 + L1MC/D LINE L1 609 789 -5416 1256 297 89 40 chr6 11726749 11726769 -170688473 + L1MC/D LINE L1 4052 4070 -2145 216 0 0 0 chr6 11726769 11726793 -170688449 + (TG)n Simple_repeat Simple_repeat 1 24 0 1256 297 89 40 chr6 11726793 11727965 -170687277 + L1MC/D LINE L1 4070 5302 -913 1206 279 94 29 chr6 11727982 11728494 -170686748 + L1MC/D LINE L1 5324 5868 -2009 807 84 0 0 chr6 11729058 11729165 -170686077 - AluSg/x SINE Alu -13 297 191 2132 93 0 93 chr6 11730024 11730358 -170684884 + AluSq SINE Alu 1 303 -10 1287 284 38 42 chr6 11730441 11731160 -170684082 + L1MEd LINE L1 1010 1725 -4671 252 294 0 0 chr6 11731162 11731230 -170684012 + L1ME1 LINE L1 6046 6113 -53 265 340 0 0 chr6 11731254 11731360 -170683882 + L1MEd LINE L1 1711 1816 -4580 290 246 130 62 chr6 11731497 11731850 -170683392 + L1MEd LINE L1 1877 2253 -4143 259 241 23 46 chr6 11732000 11732087 -170683155 + L1MEd LINE L1 3871 3955 -2260 * 1464 261 48 46 chr6 11732070 11732594 -170682648 + L1MB8 LINE L1 3672 4196 -2019 950 285 106 65 chr6 11732602 11733565 -170681677 + L1MC4 LINE L1 5973 6927 -881 * 4891 180 73 22 chr6 11733557 11735349 -170679893 + L1MB8 LINE L1 4136 6018 -229 233 229 31 52 chr6 11735408 11735504 -170679738 + T-rich Low_complexity Low_complexity 2 95 0 287 329 83 24 chr6 11736934 11737186 -170678056 - L2 LINE L2 -636 2678 2412 1887 162 87 0 chr6 11737509 11737854 -170677388 + L1MB2 LINE L1 5746 6120 -51 24 0 0 29 chr6 11737863 11737885 -170677357 + AT_rich Low_complexity Low_complexity 1 23 -11 2158 110 3 3 chr6 11737885 11738176 -170677066 + AluSq SINE Alu 1 291 -22 24 0 0 29 chr6 11738176 11738188 -170677054 + AT_rich Low_complexity Low_complexity 23 34 0 728 139 9 0 chr6 11738230 11738338 -170676904 + FRAM SINE Alu 31 139 -37 2231 103 0 17 chr6 11738359 11738694 -170676548 + AluSx SINE Alu 1 312 0 358 322 28 7 chr6 11739287 11739430 -170675812 - L2 LINE L2 -4 3309 3164 2356 101 0 0 chr6 11740399 11740697 -170674545 + AluSx SINE Alu 1 298 -14 2303 113 0 0 chr6 11740970 11741270 -170673972 + AluSx SINE Alu 1 300 -12 466 271 106 37 chr6 11742566 11742784 -170672458 - MIR SINE MIR -10 252 20 1126 257 139 47 chr6 11742821 11743517 -170671725 - L1MC4 LINE L1 0 8042 7283 2362 104 0 19 chr6 11744232 11744541 -170670701 + AluSx SINE Alu 1 303 -9 1624 88 66 0 chr6 11745406 11745632 -170669610 + AluSq SINE Alu 1 241 -72 4071 128 69 40 chr6 11745632 11746995 -170668247 + pTR5 LTR ERV1 743 2438 0 287 183 0 17 chr6 11746998 11747058 -170668184 + AluSq SINE Alu 236 294 -6 2288 94 17 0 chr6 11748558 11748971 -170666271 - AluSg SINE Alu 0 418 1 730 306 86 40 chr6 11749231 11749565 -170665677 + L2 LINE L2 2400 2717 -596 1454 188 16 46 chr6 11749565 11749868 -170665374 + AluJo SINE Alu 1 294 -18 2060 98 4 0 chr6 11749871 11750137 -170665105 + AluSg SINE Alu 1 267 -43 306 0 0 0 chr6 11750147 11750181 -170665061 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 730 306 86 40 chr6 11750181 11750700 -170664542 + L2 LINE L2 2726 3313 0 188 258 16 16 chr6 11750940 11751002 -170664240 - L2 LINE L2 -463 2851 2790 2383 92 0 10 chr6 11751266 11751580 -170663662 - AluSx SINE Alu -1 311 1 338 277 103 33 chr6 11752045 11752229 -170663013 + MIR SINE MIR 63 259 -3 268 236 90 83 chr6 11752938 11753010 -170662232 + MER103 DNA DNA 3 73 -93 2491 96 0 0 chr6 11753010 11753322 -170661920 - AluSx SINE Alu 0 312 1 268 236 90 83 chr6 11753322 11753393 -170661849 + MER103 DNA DNA 73 147 -19 240 232 0 43 chr6 11753567 11753636 -170661606 + CT-rich Low_complexity Low_complexity 3 68 0 1505 203 122 3 chr6 11753941 11754295 -170660947 + MSTD LTR MaLR 1 396 0 2183 228 65 37 chr6 11755017 11755132 -170660110 - L1ME1 LINE L1 -5 6161 6051 777 252 39 24 chr6 11755132 11755338 -170659904 - MER3 DNA MER1_type 0 209 1 2183 228 65 37 chr6 11755338 11755849 -170659393 - L1ME1 LINE L1 -115 6051 5517 1438 243 49 19 chr6 11755877 11756309 -170658933 - L1ME1 LINE L1 -3556 2590 2146 2645 222 30 27 chr6 11756311 11757010 -170658232 - L1ME1 LINE L1 -18 6148 5448 1255 207 81 25 chr6 11757116 11757522 -170657720 - L1ME1 LINE L1 -885 5261 4833 23 54 0 0 chr6 11759771 11759808 -170655434 + AT_rich Low_complexity Low_complexity 1 37 0 216 280 173 40 chr6 11760475 11760625 -170654617 + MIR3 SINE MIR 30 199 -9 210 314 23 0 chr6 11760699 11760785 -170654457 + MIR SINE MIR 175 262 0 2529 61 3 0 chr6 11761361 11761655 -170653587 - AluY SINE Alu -16 295 1 292 228 216 9 chr6 11761869 11761977 -170653265 - MIR SINE MIR -58 150 40 201 132 0 0 chr6 11761988 11762026 -170653216 + (CATTT)n Simple_repeat Simple_repeat 1 38 0 252 172 0 0 chr6 11762254 11762312 -170652930 + GA-rich Low_complexity Low_complexity 1 58 0 2391 98 0 0 chr6 11763687 11763984 -170651258 - AluSg SINE Alu -13 297 1 391 236 62 81 chr6 11764404 11764565 -170650677 - MIR3 SINE MIR -48 160 3 193 338 14 0 chr6 11766298 11766369 -170648873 + MIR SINE MIR 76 147 -115 1855 148 20 10 chr6 11766468 11766771 -170648471 + AluJb SINE Alu 1 306 -6 2547 78 0 3 chr6 11767392 11767699 -170647543 + AluSc SINE Alu 1 306 -3 1979 146 6 25 chr6 11767762 11768077 -170647165 + AluSx SINE Alu 1 309 -3 2163 119 17 3 chr6 11768600 11768895 -170646347 - AluSq SINE Alu -14 299 1 2264 95 3 0 chr6 11770453 11770762 -170644480 + AluSq SINE Alu 2 311 0 2374 97 0 0 chr6 11770762 11771073 -170644169 + AluY SINE Alu 1 311 0 603 203 115 14 chr6 11772862 11773010 -170642232 - Charlie8 DNA MER1_type -2246 171 9 182 367 50 0 chr6 11773141 11773261 -170641981 + L2 LINE L2 2925 3050 -222 185 232 89 0 chr6 11773420 11773476 -170641766 + L2 LINE L2 3247 3307 -6 423 268 178 5 chr6 11774026 11774239 -170641003 + MIR SINE MIR 13 262 0 2570 56 0 40 chr6 11774388 11774712 -170640530 - AluY SINE Alu 0 311 1 275 217 96 48 chr6 11775075 11775158 -170640084 + L1MEd LINE L1 583 669 -5450 27 29 0 0 chr6 11776425 11776459 -170638783 + AT_rich Low_complexity Low_complexity 1 34 0 200 289 79 0 chr6 11778797 11778873 -170636369 - MIR3 SINE MIR -8 200 119 2361 113 0 0 chr6 11779179 11779489 -170635753 + AluSg SINE Alu 1 310 0 248 277 23 59 chr6 11779852 11780011 -170635231 + MIR SINE MIR 34 136 -72 2043 148 0 3 chr6 11780369 11780667 -170634575 - AluSq SINE Alu -16 297 1 2444 91 0 0 chr6 11780876 11781174 -170634068 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr6 11781203 11781225 -170634017 + AT_rich Low_complexity Low_complexity 1 22 0 255 152 0 0 chr6 11782077 11782123 -170633119 + (TG)n Simple_repeat Simple_repeat 2 47 0 254 356 35 0 chr6 11782492 11782607 -170632635 - L2 LINE L2 -221 3051 2933 2062 137 0 0 chr6 11782635 11782934 -170632308 + AluSx SINE Alu 1 299 -13 259 258 0 15 chr6 11783984 11784050 -170631192 + ORSL DNA AcHobo 211 275 0 551 256 87 19 chr6 11784315 11784527 -170630715 - MIR SINE MIR -18 244 17 422 292 16 52 chr6 11784870 11785062 -170630180 + MER5A DNA MER1_type 1 185 -4 356 160 27 0 chr6 11785457 11785532 -170629710 + GA-rich Low_complexity Low_complexity 4 80 0 236 293 207 12 chr6 11787111 11787275 -170627967 + L2 LINE L2 3118 3313 0 288 241 116 18 chr6 11791116 11791228 -170624014 - MIR3 SINE MIR -32 176 54 184 255 20 0 chr6 11791395 11791446 -170623796 + MIR SINE MIR 78 129 -79 480 292 37 6 chr6 11792309 11792470 -170622772 - MIR3 SINE MIR -12 196 31 193 342 79 26 chr6 11793270 11793384 -170621858 + L2 LINE L2 3153 3272 0 2290 112 3 3 chr6 11795840 11796152 -170619090 + AluSx SINE Alu 1 312 0 218 189 151 0 chr6 11796233 11796286 -170618956 - MIR3 SINE MIR -14 194 134 959 141 17 108 chr6 11797673 11797914 -170617328 + MER20 DNA MER1_type 1 219 0 258 32 0 0 chr6 11800223 11800254 -170614988 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2425 56 7 0 chr6 11800256 11800540 -170614702 - AluY SINE Alu -25 286 1 22 0 0 0 chr6 11800540 11800562 -170614680 + AT_rich Low_complexity Low_complexity 1 22 0 287 290 183 21 chr6 11801527 11801713 -170613529 - MIR SINE MIR -1 261 46 450 236 92 35 chr6 11802066 11802240 -170613002 - MIR SINE MIR -6 256 73 2249 113 3 0 chr6 11802988 11803289 -170611953 + AluSx SINE Alu 1 302 -10 228 86 0 0 chr6 11803522 11803557 -170611685 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 720 229 78 0 chr6 11805039 11805205 -170610037 + MIR SINE MIR 11 189 -73 209 267 0 0 chr6 11807881 11807926 -170607316 + CT-rich Low_complexity Low_complexity 6 50 0 2235 105 16 10 chr6 11809445 11809751 -170605491 - AluSq SINE Alu -5 308 1 234 269 92 8 chr6 11809782 11809901 -170605341 + MIR SINE MIR 134 262 0 274 224 22 30 chr6 11809901 11810035 -170605207 + (TTA)n Simple_repeat Simple_repeat 1 133 0 1373 269 60 21 chr6 11810141 11810672 -170604570 - L2 LINE L2 -26 3287 2718 237 280 48 65 chr6 11811260 11811428 -170603814 - MIR3 SINE MIR -15 193 29 975 212 102 29 chr6 11812248 11812522 -170602720 + MER58B DNA MER1_type 45 338 -3 378 304 48 44 chr6 11812871 11813098 -170602144 - MIR SINE MIR -33 229 2 1943 151 0 22 chr6 11813617 11813929 -170601313 + AluJo SINE Alu 1 305 -7 2409 95 0 0 chr6 11814503 11814807 -170600435 + AluSc SINE Alu 1 304 -5 796 295 28 8 chr6 11817501 11817755 -170597487 - MER46C DNA MER2_type 0 338 80 458 264 171 10 chr6 11818024 11818070 -170597172 - MER5C DNA MER1_type -100 224 187 225 65 0 0 chr6 11818070 11818101 -170597141 + (ATG)n Simple_repeat Simple_repeat 2 32 0 458 264 171 10 chr6 11818101 11818247 -170596995 - MER5C DNA MER1_type -137 187 1 2020 119 13 16 chr6 11818635 11818953 -170596289 + MLT2D LTR ERVL 1 317 -97 216 216 0 0 chr6 11819000 11819051 -170596191 + (CA)n Simple_repeat Simple_repeat 2 52 0 621 331 57 38 chr6 11819309 11819729 -170595513 + MLT1K LTR MaLR 157 584 -4 206 275 58 58 chr6 11819730 11819850 -170595392 + L2 LINE L2 3185 3304 -9 1039 163 9 14 chr6 11822173 11822388 -170592854 - L1MB7 LINE L1 -16 6168 5955 186 133 0 0 chr6 11822960 11822990 -170592252 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1059 201 5 0 chr6 11823773 11823967 -170591275 + MLT2D LTR ERVL 3 197 -217 1299 230 193 26 chr6 11823984 11824414 -170590828 - MLT1J LTR MaLR -9 502 1 23 0 0 0 chr6 11827578 11827601 -170587641 + AT_rich Low_complexity Low_complexity 1 23 0 710 133 11 116 chr6 11828726 11828857 -170586385 - MER53 DNA DNA -7 182 74 2152 123 27 0 chr6 11828857 11829150 -170586092 - AluSg SINE Alu -9 301 1 710 133 11 116 chr6 11829150 11829199 -170586043 - MER53 DNA DNA -115 74 21 786 120 8 0 chr6 11829225 11829342 -170585900 - L1PB1 LINE L1 -3 6148 6031 383 338 35 65 chr6 11830261 11830658 -170584584 - L2 LINE L2 -337 2977 2593 1692 127 113 11 chr6 11831228 11831503 -170583739 - AluJb SINE Alu -9 303 1 1229 199 0 0 chr6 11831891 11832102 -170583140 - MER20 DNA MER1_type 0 219 9 324 0 0 0 chr6 11832515 11832551 -170582691 + (TG)n Simple_repeat Simple_repeat 1 36 0 273 29 0 0 chr6 11834675 11834709 -170580533 + (CA)n Simple_repeat Simple_repeat 2 35 0 501 296 50 10 chr6 11835059 11835258 -170579984 + MIR SINE MIR 2 208 -54 306 169 0 0 chr6 11835596 11835661 -170579581 + (TG)n Simple_repeat Simple_repeat 2 66 0 214 290 86 74 chr6 11835958 11836120 -170579122 - MIR SINE MIR -50 212 49 430 307 16 0 chr6 11838668 11838795 -170576447 + MIR SINE MIR 41 169 -93 1625 224 88 100 chr6 11839128 11839605 -170575637 + HAL1b LINE L1 443 905 -443 829 158 0 8 chr6 11839605 11839738 -170575504 - FLAM_C SINE Alu -1 132 1 1625 224 88 100 chr6 11839738 11840147 -170575095 + HAL1b LINE L1 905 1318 -30 2535 173 10 10 chr6 11840456 11840935 -170574307 + L1PB4 LINE L1 5677 6155 -1 885 149 28 145 chr6 11840952 11841200 -170574042 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr6 11841337 11841359 -170573883 + AT_rich Low_complexity Low_complexity 1 22 0 1782 149 10 14 chr6 11842774 11843070 -170572172 - AluJb SINE Alu -17 295 1 2330 79 0 0 chr6 11843185 11843465 -170571777 + AluSq SINE Alu 1 280 -33 381 22 0 0 chr6 11843465 11843511 -170571731 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr6 11844551 11844580 -170570662 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2019 127 13 7 chr6 11844585 11844884 -170570358 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 11845107 11845129 -170570113 + AT_rich Low_complexity Low_complexity 1 22 0 234 278 106 40 chr6 11845518 11845669 -170569573 - L2 LINE L2 -143 3129 2969 1590 176 17 27 chr6 11845775 11846076 -170569166 - AluJo SINE Alu -14 298 1 4214 150 24 65 chr6 11849384 11850276 -170564966 + L1MA8 LINE L1 5431 6285 -6 228 182 0 0 chr6 11850276 11850320 -170564922 + (CATA)n Simple_repeat Simple_repeat 3 46 0 381 216 0 0 chr6 11851071 11851159 -170564083 + (TG)n Simple_repeat Simple_repeat 1 88 0 211 209 0 0 chr6 11851182 11851225 -170564017 + L2 LINE L2 3179 3221 -92 252 0 0 0 chr6 11851682 11851710 -170563532 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 330 344 53 21 chr6 11852632 11852821 -170562421 + LTR33 LTR ERVL 23 217 -304 338 303 298 0 chr6 11853039 11853217 -170562025 - MIR SINE MIR -19 243 13 333 233 126 0 chr6 11853415 11853518 -170561724 + MER5B DNA MER1_type 1 116 -62 966 209 24 0 chr6 11854739 11854950 -170560292 - MER20 DNA MER1_type 0 219 4 401 283 178 12 chr6 11855232 11855479 -170559763 + LTR33 LTR ERVL 5 292 -229 852 271 142 57 chr6 11855895 11856260 -170558982 + MLT1L LTR MaLR 1 334 -281 922 128 0 0 chr6 11856260 11856393 -170558849 - FLAM_C SINE Alu 0 133 1 852 271 142 57 chr6 11856393 11856477 -170558765 + MLT1L LTR MaLR 334 409 -206 1755 153 50 17 chr6 11856477 11856778 -170558464 - AluSx SINE Alu -1 311 1 852 271 142 57 chr6 11856778 11856870 -170558372 + MLT1L LTR MaLR 409 589 -26 1482 308 136 12 chr6 11856976 11858135 -170557107 + L2 LINE L2 1978 3282 -31 201 39 0 0 chr6 11858153 11858179 -170557063 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 211 235 0 44 chr6 11858276 11858344 -170556898 + L2 LINE L2 2152 2216 -1098 2280 80 0 52 chr6 11859007 11859333 -170555909 + AluY SINE Alu 1 309 -2 38 0 0 0 chr6 11859516 11859554 -170555688 + AT_rich Low_complexity Low_complexity 1 38 0 655 272 58 5 chr6 11859577 11859801 -170555441 - MIR SINE MIR -4 258 23 3765 211 43 35 chr6 11860038 11861698 -170553544 + L1ME1 LINE L1 4448 6121 -45 339 164 15 0 chr6 11861809 11861876 -170553366 + L1MA10 LINE L1 6266 6333 -1 1916 145 0 3 chr6 11861884 11862186 -170553056 + AluSx SINE Alu 1 301 0 234 0 0 0 chr6 11862264 11862290 -170552952 + (CA)n Simple_repeat Simple_repeat 1 26 0 2209 92 4 0 chr6 11864180 11864490 -170550752 - AluY SINE Alu 0 311 1 335 321 9 0 chr6 11865606 11865712 -170549530 + MLT1J1 LTR MaLR 66 172 -274 2658 49 0 0 chr6 11866007 11866313 -170548929 - AluY SINE Alu -5 306 1 439 269 39 51 chr6 11867645 11867801 -170547441 + MER5A DNA MER1_type 35 188 -1 431 310 105 35 chr6 11867873 11868102 -170547140 - MIR SINE MIR -6 256 12 5658 149 29 30 chr6 11868215 11868739 -170546503 - L1MA9 LINE L1 -6 6306 5783 309 89 0 0 chr6 11868739 11868784 -170546458 + (TG)n Simple_repeat Simple_repeat 2 46 0 5658 149 29 30 chr6 11868784 11869018 -170546224 - L1MA9 LINE L1 -529 5783 5550 2315 133 117 5 chr6 11869018 11869403 -170545839 + MSTA LTR MaLR 1 428 0 5658 149 29 30 chr6 11869403 11869544 -170545698 - L1MA9 LINE L1 -762 5550 5410 2734 101 0 3 chr6 11869544 11869909 -170545333 + THE1B LTR MaLR 1 364 0 5658 149 29 30 chr6 11869909 11870113 -170545129 - L1MA9 LINE L1 -902 5410 5203 790 272 81 0 chr6 11870314 11870586 -170544656 + LTR16A LTR ERVL 152 445 -5 2372 121 32 8 chr6 11870639 11871012 -170544230 + MLT1B LTR MaLR 1 382 -8 683 35 0 61 chr6 11871346 11871461 -170543781 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 2224 130 0 0 chr6 11871461 11871768 -170543474 - AluSx SINE Alu -5 307 1 212 171 0 0 chr6 11871863 11871904 -170543338 + T-rich Low_complexity Low_complexity 1 41 0 830 213 60 47 chr6 11872430 11872636 -170542606 - MIR SINE MIR -18 244 33 2165 142 0 0 chr6 11872636 11872947 -170542295 - AluSx SINE Alu -1 311 1 830 213 60 47 chr6 11872947 11872975 -170542267 - MIR SINE MIR -229 33 7 198 118 0 0 chr6 11873021 11873055 -170542187 + (TG)n Simple_repeat Simple_repeat 1 34 0 7400 91 17 10 chr6 11873611 11879703 -170535539 + L1PA6 LINE L1 11 6149 -5 262 350 105 8 chr6 11879973 11880135 -170535107 - MIR SINE MIR -55 207 32 265 307 114 9 chr6 11882452 11882566 -170532676 - L1ME2 LINE L1 -48 6116 5991 1602 300 96 21 chr6 11882581 11883101 -170532141 + MER115 DNA AcHobo 3 579 -114 2684 49 0 0 chr6 11883101 11883408 -170531834 - AluY SINE Alu -4 307 1 1602 300 96 21 chr6 11883408 11883514 -170531728 + MER115 DNA AcHobo 579 676 -17 939 264 24 10 chr6 11883841 11884129 -170531113 - L1ME2 LINE L1 -202 5968 5677 402 203 136 0 chr6 11884193 11884307 -170530935 - FLAM_A SINE Alu -26 107 3 370 270 112 4 chr6 11884308 11884447 -170530795 - L1ME2 LINE L1 -577 5585 5434 442 350 28 9 chr6 11885027 11885350 -170529892 + L2 LINE L2 980 1308 -2006 220 374 14 43 chr6 11885498 11885776 -170529466 + L2 LINE L2 1332 1601 -1713 1307 183 109 29 chr6 11885900 11886250 -170528992 + MLT1B LTR MaLR 7 384 -6 358 325 12 25 chr6 11886261 11886421 -170528821 + MIR SINE MIR 70 227 -35 364 106 0 0 chr6 11886421 11886465 -170528777 - MLT1B LTR MaLR 0 390 347 331 93 0 0 chr6 11886465 11886508 -170528734 + Alu SINE Alu 1 43 -259 247 368 110 16 chr6 11887165 11887347 -170527895 + L2 LINE L2 2550 2748 -566 414 198 267 32 chr6 11887355 11887418 -170527824 + L1MC5 LINE L1 7629 7676 -285 217 0 61 0 chr6 11887418 11887451 -170527791 + (TA)n Simple_repeat Simple_repeat 2 36 0 414 198 267 32 chr6 11887451 11887604 -170527638 + L1MC5 LINE L1 7676 7896 -65 225 350 10 20 chr6 11887660 11887760 -170527482 + L2 LINE L2 2736 2834 -480 765 171 17 0 chr6 11887836 11888011 -170527231 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 905 164 6 9 chr6 11888023 11888365 -170526877 + (TGGA)n Simple_repeat Simple_repeat 1 341 0 295 331 93 0 chr6 11888365 11888516 -170526726 + MIR3 SINE MIR 7 171 -37 21 82 0 0 chr6 11888561 11888610 -170526632 + AT_rich Low_complexity Low_complexity 1 49 0 187 289 0 0 chr6 11888617 11888669 -170526573 + L3 LINE CR1 1524 1575 -2 22 0 0 0 chr6 11888738 11888760 -170526482 + AT_rich Low_complexity Low_complexity 1 22 0 234 200 18 55 chr6 11889000 11889055 -170526187 + L2 LINE L2 3214 3266 -6 289 295 164 16 chr6 11889484 11889606 -170525636 + MIR3 SINE MIR 16 155 -53 309 347 68 37 chr6 11891389 11891847 -170523395 - L2 LINE L2 -647 2667 2196 2046 103 59 7 chr6 11891890 11892180 -170523062 + AluSx SINE Alu 1 305 -7 302 282 149 11 chr6 11892290 11892464 -170522778 - L2 LINE L2 -1371 1943 1746 1755 229 31 74 chr6 11892515 11893057 -170522185 + MLT2B1 LTR ERVL 2 520 0 232 296 0 0 chr6 11893067 11893121 -170522121 + polypurine Low_complexity Low_complexity 1 54 0 482 233 2 15 chr6 11894067 11894523 -170520719 + (CA)n Simple_repeat Simple_repeat 1 450 0 183 229 0 0 chr6 11894571 11894632 -170520610 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr6 11894975 11894996 -170520246 + AT_rich Low_complexity Low_complexity 1 21 0 562 294 51 29 chr6 11895215 11895639 -170519603 + L1ME4a LINE L1 5575 6008 -113 692 190 10 0 chr6 11895786 11895984 -170519258 + GA-rich Low_complexity Low_complexity 1 200 0 3210 79 17 0 chr6 11896668 11897088 -170518154 + L1PA8 LINE L1 5745 6171 -1 283 303 38 30 chr6 11897480 11897612 -170517630 + MER5A DNA MER1_type 57 189 0 243 226 165 0 chr6 11897627 11897694 -170517548 + MIR SINE MIR 31 106 -102 958 217 33 19 chr6 11898200 11898412 -170516830 + MER20 DNA MER1_type 5 219 0 4556 179 58 48 chr6 11899196 11899813 -170515429 + MER45B DNA AcHobo 1 633 -948 2325 100 3 0 chr6 11899813 11900112 -170515130 + AluSx SINE Alu 1 300 -12 4556 179 58 48 chr6 11900112 11900497 -170514745 + MER45B DNA AcHobo 633 1013 -27 2250 115 0 6 chr6 11900602 11900914 -170514328 + AluSx SINE Alu 1 310 -2 356 320 0 0 chr6 11901745 11901848 -170513394 + MER94 DNA DNA 1 103 -31 215 270 108 0 chr6 11901900 11901974 -170513268 + MIR3 SINE MIR 96 177 -31 1063 158 0 50 chr6 11904442 11904644 -170510598 + MER20 DNA MER1_type 28 219 0 836 257 5 10 chr6 11904697 11904903 -170510339 + MER3 DNA MER1_type 3 207 -2 449 108 0 14 chr6 11907767 11907841 -170507401 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 257 203 70 112 chr6 11908924 11909111 -170506131 + L1ME4a LINE L1 5943 6121 0 9548 100 9 2 chr6 11909310 11910587 -170504655 + HSMAR1 DNA Mariner 1 1287 0 3302 143 22 13 chr6 11910974 11911525 -170503717 - Tigger3b DNA MER2_type -1 1230 675 2831 179 44 19 chr6 11911512 11911678 -170503564 - Tigger3b DNA MER2_type -2472 556 396 * 2232 113 3 0 chr6 11911678 11911979 -170503263 + AluSg SINE Alu 1 302 -8 2831 179 44 19 chr6 11911979 11912354 -170502888 - Tigger3b DNA MER2_type -2632 396 1 204 278 89 33 chr6 11912374 11912464 -170502778 + L2 LINE L2 3203 3297 -16 2596 150 37 22 chr6 11912764 11913223 -170502019 + MLT1C LTR MaLR 1 466 -1 2449 91 0 0 chr6 11913381 11913678 -170501564 + AluSc SINE Alu 1 297 -12 230 108 27 0 chr6 11913994 11914031 -170501211 - L1P4 LINE L1 -330 5833 5796 435 274 65 20 chr6 11915180 11915333 -170499909 - MIR SINE MIR -30 232 73 729 280 100 12 chr6 11915466 11915805 -170499437 + L2 LINE L2 2608 2976 -338 348 284 50 55 chr6 11915851 11916069 -170499173 + L1MEc LINE L1 204 420 -6143 761 197 28 0 chr6 11916320 11916462 -170498780 - MER3 DNA MER1_type -63 146 1 1711 283 73 41 chr6 11916464 11917510 -170497732 + L1MEc LINE L1 755 1833 -4551 867 262 110 14 chr6 11917479 11917842 -170497400 + L1ME2 LINE L1 5989 6386 -14 * 2236 108 0 3 chr6 11917887 11918182 -170497060 + AluSg SINE Alu 1 294 -16 591 236 187 9 chr6 11918184 11918409 -170496833 + L2 LINE L2 3030 3294 -19 234 105 0 0 chr6 11918413 11918451 -170496791 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 604 256 137 26 chr6 11920732 11920966 -170494276 + L2 LINE L2 3053 3312 -1 282 224 45 0 chr6 11921956 11922023 -170493219 + MIR SINE MIR 84 153 -109 10182 155 9 1 chr6 11922032 11924675 -170490567 + L1PA13 LINE L1 3501 6159 -4 247 288 81 9 chr6 11925322 11925433 -170489809 - L3 LINE CR1 -1 1576 1458 241 192 154 58 chr6 11925416 11925520 -170489722 - L2 LINE L2 -21 3251 3138 * 507 179 97 28 chr6 11925663 11925808 -170489434 - L1MA9 LINE L1 -9 6303 6149 836 262 73 66 chr6 11926168 11926646 -170488596 + MER39 LTR ERV1 67 707 0 356 309 78 11 chr6 11927293 11927484 -170487758 + MIR SINE MIR 2 205 -57 246 253 178 27 chr6 11927575 11927721 -170487521 + MIR SINE MIR 84 251 -11 1585 215 54 39 chr6 11927926 11928386 -170486856 + MLT1C LTR MaLR 1 467 0 675 303 131 25 chr6 11929345 11929665 -170485577 + MLT1K LTR MaLR 3 356 -232 231 154 0 0 chr6 11929768 11929807 -170485435 + MLT1K LTR MaLR 550 588 0 24 0 0 0 chr6 11930083 11930107 -170485135 + AT_rich Low_complexity Low_complexity 1 24 0 450 266 9 0 chr6 11930217 11930326 -170484916 - MER81 DNA DNA 0 114 5 2501 52 0 10 chr6 11930455 11930760 -170484482 - AluY SINE Alu -9 302 1 318 273 56 35 chr6 11930986 11931129 -170484113 - MER5B DNA MER1_type 0 178 33 580 168 104 0 chr6 11931249 11931374 -170483868 - MER5A DNA MER1_type -7 182 45 2422 53 16 10 chr6 11932709 11933013 -170482229 + AluSc SINE Alu 1 306 -3 2530 110 78 8 chr6 11935150 11935550 -170479692 + MSTA LTR MaLR 1 428 0 2008 126 126 48 chr6 11936000 11936397 -170478845 - MSTA LTR MaLR 0 428 1 1443 213 62 15 chr6 11936752 11937090 -170478152 + MLT1A1 LTR MaLR 1 354 -11 239 268 37 24 chr6 11938590 11938672 -170476570 - MIR SINE MIR -21 241 159 2904 161 72 0 chr6 11938675 11939191 -170476051 + MER68 LTR ERV1 4 556 -6 697 245 7 0 chr6 11939204 11939351 -170475891 - MIR SINE MIR -103 159 12 2035 119 7 10 chr6 11940447 11940741 -170474501 + AluSx SINE Alu 1 293 -19 1812 126 53 0 chr6 11940743 11941005 -170474237 + AluSg SINE Alu 1 276 -34 824 141 23 6 chr6 11941026 11941203 -170474039 + GA-rich Low_complexity Low_complexity 1 180 0 298 325 25 67 chr6 11941477 11941639 -170473603 + MIR SINE MIR 37 191 -61 679 221 62 112 chr6 11943606 11943864 -170471378 - MIR SINE MIR -5 257 13 259 278 56 16 chr6 11944504 11944630 -170470612 - L1MC/D LINE L1 -1954 5854 5724 307 307 140 28 chr6 11945444 11945838 -170469404 - L2 LINE L2 0 3313 2876 2729 177 13 0 chr6 11945840 11946308 -170468934 - L1MC1 LINE L1 -1 6332 5859 6642 92 11 19 chr6 11946591 11947547 -170467695 - L1MA2 LINE L1 -11 6293 5345 21 0 0 0 chr6 11947884 11947905 -170467337 + AT_rich Low_complexity Low_complexity 1 21 0 445 203 32 98 chr6 11948269 11948392 -170466850 + L2 LINE L2 3183 3297 -16 2212 166 26 45 chr6 11948431 11948784 -170466458 + MLT2D LTR ERVL 1 346 -68 207 0 0 0 chr6 11948784 11948807 -170466435 + (TC)n Simple_repeat Simple_repeat 2 24 0 2212 166 26 45 chr6 11948807 11948875 -170466367 + MLT2D LTR ERVL 346 414 0 1000 145 0 6 chr6 11999456 11999615 -170415627 - MSTA LTR MaLR -269 159 2 3089 261 36 24 chr6 11999615 12001816 -170413426 - L1MEc LINE L1 -2957 3258 991 982 286 23 9 chr6 12001862 12002205 -170413037 - L1MEc LINE L1 -6013 383 36 420 238 90 8 chr6 12002290 12002412 -170412830 + L1MEd LINE L1 988 1119 -5000 380 332 25 4 chr6 12002508 12002746 -170412496 - L1MEc LINE L1 -4722 1674 1432 515 255 21 35 chr6 12002882 12003015 -170412227 + MER45 DNA AcHobo 1 133 -820 305 91 0 0 chr6 12003015 12003059 -170412183 - L1MB2 LINE L1 -2 6169 6126 2085 168 25 27 chr6 12003060 12003466 -170411776 - MSTB1 LTR MaLR -12 420 16 1724 155 36 3 chr6 12003484 12003819 -170411423 - L1MB2 LINE L1 -51 6120 5775 286 234 16 0 chr6 12003841 12003905 -170411337 + MER45 DNA AcHobo 1517 1581 0 1861 178 18 0 chr6 12004656 12004994 -170410248 + MER2 DNA MER2_type 1 344 0 288 177 247 19 chr6 12005500 12005658 -170409584 + Charlie5 DNA MER1_type 2371 2564 -48 301 138 43 128 chr6 12005750 12005844 -170409398 + Charlie5 DNA MER1_type 2539 2624 0 1707 133 72 17 chr6 12006121 12006414 -170408828 - AluSq SINE Alu -4 309 1 36030 84 11 9 chr6 12006818 12012955 -170402287 + L1PA6 LINE L1 11 6149 -5 442 325 52 33 chr6 12014079 12014291 -170400951 + LTR16C LTR ERVL 66 281 -210 405 0 0 0 chr6 12014373 12014418 -170400824 + (ATG)n Simple_repeat Simple_repeat 2 46 0 814 186 124 10 chr6 12014434 12014627 -170400615 + LTR16C LTR ERVL 275 489 -2 644 184 9 25 chr6 12014634 12014955 -170400287 + (TCTA)n Simple_repeat Simple_repeat 1 315 0 609 291 23 17 chr6 12015524 12015699 -170399543 + MIR SINE MIR 36 211 -51 186 43 0 0 chr6 12015805 12015828 -170399414 + (CA)n Simple_repeat Simple_repeat 2 24 0 2353 77 7 3 chr6 12017128 12017426 -170397816 + AluY SINE Alu 1 299 -12 2883 137 17 2 chr6 12018046 12018521 -170396721 - L1MB2 LINE L1 -1 6170 5689 422 282 64 32 chr6 12018901 12019057 -170396185 - MIR SINE MIR -96 166 6 3941 28 7 0 chr6 12019170 12019632 -170395610 + L1PA3 LINE L1 5688 6152 -3 514 233 144 11 chr6 12019699 12019879 -170395363 + MIR SINE MIR 53 256 -6 2242 115 3 0 chr6 12019935 12020239 -170395003 + AluSc SINE Alu 1 305 -4 2264 89 0 7 chr6 12020921 12021213 -170394029 - AluSc SINE Alu -19 290 1 2223 109 0 13 chr6 12021841 12022153 -170393089 - AluSc SINE Alu -1 308 1 235 268 7 43 chr6 12022935 12023073 -170392169 + CT-rich Low_complexity Low_complexity 2 134 0 2139 123 7 7 chr6 12023495 12023805 -170391437 + AluSq SINE Alu 1 310 -3 898 189 18 0 chr6 12023939 12024108 -170391134 - MER5A DNA MER1_type 0 189 18 2152 177 33 17 chr6 12024200 12024619 -170390623 + MSTB LTR MaLR 1 426 0 22 56 0 0 chr6 12024622 12024658 -170390584 + AT_rich Low_complexity Low_complexity 1 36 0 2172 128 3 3 chr6 12025292 12025598 -170389644 - AluSq SINE Alu -7 306 1 2328 93 10 0 chr6 12025772 12026074 -170389168 - AluSg SINE Alu 0 310 6 1029 143 20 25 chr6 12027739 12027942 -170387300 + L1M3 LINE L1 5458 5659 -512 248 143 0 0 chr6 12027951 12027986 -170387256 + Alu SINE Alu 10 44 -258 335 228 97 69 chr6 12028942 12029087 -170386155 + MIR SINE MIR 56 204 -58 2488 303 119 27 chr6 12030921 12032465 -170382777 - L2 LINE L2 0 3313 1617 21 0 0 0 chr6 12032869 12032890 -170382352 + AT_rich Low_complexity Low_complexity 1 21 0 5279 99 15 0 chr6 12033134 12033918 -170381324 + L1PA14 LINE L1 5366 6161 0 262 283 172 0 chr6 12034280 12034379 -170380863 + MIR3 SINE MIR 87 202 -6 207 0 0 0 chr6 12034702 12034725 -170380517 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 571 278 58 11 chr6 12035215 12035486 -170379756 - MLT1G1 LTR MaLR 0 590 199 321 247 22 11 chr6 12035501 12035590 -170379652 + GA-rich Low_complexity Low_complexity 1 90 0 688 270 13 30 chr6 12035590 12035827 -170379415 - MLT1G1 LTR MaLR -360 235 3 1250 221 35 98 chr6 12036351 12036446 -170378796 + MLT1C LTR MaLR 2 101 -366 2201 110 0 19 chr6 12036446 12036754 -170378488 + AluSq SINE Alu 3 304 -9 1250 221 35 98 chr6 12036754 12037086 -170378156 + MLT1C LTR MaLR 101 397 -70 2045 101 14 3 chr6 12037086 12037373 -170377869 - AluSq SINE Alu -22 291 2 1250 221 35 98 chr6 12037373 12037433 -170377809 + MLT1C LTR MaLR 397 459 -8 183 284 69 60 chr6 12037817 12037933 -170377309 + L2 LINE L2 3182 3298 -15 722 315 58 24 chr6 12038267 12038683 -170376559 + LTR16B LTR ERVL 22 451 -13 582 271 69 32 chr6 12038686 12038874 -170376368 + MIR SINE MIR 51 245 -17 2273 92 3 0 chr6 12039162 12039456 -170375786 + AluSp SINE Alu 1 295 -18 361 344 82 25 chr6 12039555 12039799 -170375443 - L3 LINE CR1 -337 1240 983 1701 169 81 3 chr6 12041566 12041910 -170373332 - MLT1B LTR MaLR -10 380 10 688 133 6 139 chr6 12042110 12042275 -170372967 + FRAM SINE Alu 1 142 -34 222 37 0 0 chr6 12042275 12042302 -170372940 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2270 100 10 0 chr6 12043030 12043331 -170371911 + AluSp SINE Alu 1 304 -9 252 0 0 0 chr6 12044448 12044476 -170370766 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 604 221 0 0 chr6 12044476 12044607 -170370635 - MER3 DNA MER1_type -78 131 1 979 289 84 25 chr6 12044986 12045380 -170369862 - LTR16C LTR ERVL -4 487 71 2294 103 3 3 chr6 12049119 12049431 -170365811 + AluSx SINE Alu 1 312 0 735 156 50 0 chr6 12049458 12049599 -170365643 + L1MA9 LINE L1 6160 6307 -5 307 305 0 0 chr6 12050071 12050153 -170365089 + GA-rich Low_complexity Low_complexity 4 85 0 2256 95 0 0 chr6 12050981 12051266 -170363976 - AluSg SINE Alu -25 285 1 940 185 69 14 chr6 12051502 12051837 -170363405 - MER31B LTR ERV1 0 466 1 1523 171 109 64 chr6 12051943 12052383 -170362859 + MER31B LTR ERV1 1 460 -6 31 0 0 0 chr6 12052676 12052707 -170362535 + AT_rich Low_complexity Low_complexity 1 31 0 3138 143 62 15 chr6 12053124 12053741 -170361501 + L1MA8 LINE L1 5519 6164 -127 1262 216 87 0 chr6 12053744 12054054 -170361188 + Tigger3(Golem) DNA MER2_type 1 337 -2692 364 161 99 0 chr6 12054052 12054133 -170361109 + Tigger3(Golem) DNA MER2_type 2949 3037 0 * 597 190 0 0 chr6 12054133 12054254 -170360988 + L1MA8 LINE L1 6168 6288 -3 2349 77 3 3 chr6 12054257 12054554 -170360688 - AluY SINE Alu -13 298 2 270 81 0 0 chr6 12054569 12054606 -170360636 + (A)n Simple_repeat Simple_repeat 1 37 0 28 48 0 0 chr6 12055119 12055161 -170360081 + AT_rich Low_complexity Low_complexity 1 42 0 1096 206 42 36 chr6 12055216 12055522 -170359720 - L1MC4 LINE L1 0 8042 7735 1774 152 3 7 chr6 12057117 12057406 -170357836 + AluJo SINE Alu 1 288 -24 438 253 99 12 chr6 12057632 12057794 -170357448 - MIR SINE MIR -74 188 13 1947 129 0 14 chr6 12058551 12058829 -170356413 + AluSq SINE Alu 1 274 -39 269 297 25 0 chr6 12059003 12059121 -170356121 + MER103 DNA DNA 36 156 -10 2343 56 0 29 chr6 12059166 12059472 -170355770 + AluY SINE Alu 2 298 -13 1873 156 17 43 chr6 12059501 12059569 -170355673 + MER1B DNA MER1_type 1 69 -2641 2670 35 0 3 chr6 12059569 12059881 -170355361 + AluY SINE Alu 1 311 0 1873 156 17 43 chr6 12059881 12060158 -170355084 + MER1B DNA MER1_type 69 337 0 2405 88 0 0 chr6 12061931 12062226 -170353016 + AluSq SINE Alu 1 295 -18 270 250 29 0 chr6 12062314 12062382 -170352860 + MIR SINE MIR 82 151 -111 205 247 79 34 chr6 12062681 12062770 -170352472 - MIR SINE MIR -123 139 47 4707 62 10 0 chr6 12062828 12063437 -170351805 + L1PA8A LINE L1 5514 6128 -3 2085 116 0 7 chr6 12063625 12063917 -170351325 - AluSx SINE Alu -12 300 11 300 327 40 0 chr6 12064599 12064700 -170350542 - MIR SINE MIR -65 143 39 608 182 16 33 chr6 12064804 12064925 -170350317 + FLAM_A SINE Alu 13 131 -11 642 211 8 15 chr6 12065614 12065747 -170349495 + FLAM_A SINE Alu 1 132 -1 862 183 14 0 chr6 12065937 12066079 -170349163 + FRAM SINE Alu 1 144 -32 467 267 112 21 chr6 12066768 12066955 -170348287 + MIR SINE MIR 57 260 -2 1359 127 42 5 chr6 12067061 12067273 -170347969 - AluSg/x SINE Alu -10 302 83 23 54 0 0 chr6 12067938 12067975 -170347267 + AT_rich Low_complexity Low_complexity 1 37 0 2290 107 7 0 chr6 12070623 12070932 -170344310 + AluSp SINE Alu 1 311 -2 630 279 95 14 chr6 12071507 12071729 -170343513 - MIR SINE MIR -18 244 5 22 35 0 0 chr6 12072543 12072572 -170342670 + AT_rich Low_complexity Low_complexity 1 29 0 36 53 0 0 chr6 12075898 12075955 -170339287 + AT_rich Low_complexity Low_complexity 1 57 0 198 231 39 19 chr6 12076179 12076231 -170339011 - L3 LINE CR1 -11 1566 1514 522 289 80 20 chr6 12076676 12076877 -170338365 - MIR SINE MIR -22 240 28 583 271 173 0 chr6 12077313 12077527 -170337715 + MIR SINE MIR 10 260 -2 446 238 47 35 chr6 12077576 12077748 -170337494 + L1MC4a LINE L1 4903 5076 -1070 383 305 134 25 chr6 12077855 12078094 -170337148 + L1MC4a LINE L1 5641 5905 -1903 254 132 19 0 chr6 12078116 12078169 -170337073 + (TATG)n Simple_repeat Simple_repeat 3 56 0 843 267 74 65 chr6 12078572 12079240 -170336002 - L1ME3A LINE L1 -328 5842 5166 862 201 0 0 chr6 12079605 12079759 -170335483 + FRAM SINE Alu 20 173 -3 796 203 56 10 chr6 12079896 12080093 -170335149 + MER58 DNA MER1_type 3 208 -2212 308 285 65 46 chr6 12080150 12080410 -170334832 - L1ME3A LINE L1 -2468 3678 3414 393 276 95 40 chr6 12080602 12081098 -170334144 + L1ME LINE L1 4313 4835 -1311 742 214 78 29 chr6 12081269 12081475 -170333767 + MER58A DNA MER1_type 9 224 0 487 323 43 13 chr6 12081482 12081714 -170333528 + L1ME LINE L1 4996 5234 -912 402 246 26 7 chr6 12081737 12081955 -170333287 + L1ME LINE L1 5258 5481 -683 279 273 0 39 chr6 12082766 12082843 -170332399 + polypyrimidine Low_complexity Low_complexity 2 75 0 313 349 9 0 chr6 12082844 12082953 -170332289 - L2 LINE L2 -4 3309 3200 233 315 24 39 chr6 12083029 12083156 -170332086 + L2 LINE L2 2730 2854 -460 3119 180 83 9 chr6 12083780 12084463 -170330779 + MER50 LTR ERV1 1 734 0 282 177 63 13 chr6 12085343 12085422 -170329820 + MIR SINE MIR 167 249 -13 2031 130 46 16 chr6 12086576 12086946 -170328296 + L1MB2 LINE L1 5534 5914 -257 1819 171 0 16 chr6 12086946 12087250 -170327992 - AluJo SINE Alu -13 299 1 1077 198 49 64 chr6 12087255 12087583 -170327659 + MER21A LTR ERV1 544 866 -65 1835 112 4 0 chr6 12087636 12087878 -170327364 - AluSp SINE Alu -70 243 1 23 33 0 0 chr6 12087913 12087943 -170327299 + AT_rich Low_complexity Low_complexity 1 30 0 1227 190 65 27 chr6 12088023 12088360 -170326882 + L1MD2 LINE L1 6009 6358 -1 24 32 0 0 chr6 12088639 12088670 -170326572 + AT_rich Low_complexity Low_complexity 1 31 0 310 256 105 88 chr6 12090087 12090325 -170324917 + L1ME4a LINE L1 5868 6109 -12 809 179 0 8 chr6 12090340 12090474 -170324768 - FLAM_A SINE Alu 0 133 1 1959 90 7 25 chr6 12090504 12090781 -170324461 + AluY SINE Alu 38 309 -2 209 194 0 0 chr6 12090812 12090848 -170324394 + MER5B DNA MER1_type 1 36 -142 28 0 0 0 chr6 12091080 12091108 -170324134 + AT_rich Low_complexity Low_complexity 1 28 0 1093 206 73 24 chr6 12091344 12091452 -170323790 + MER58B DNA MER1_type 1 102 -2318 1651 181 40 13 chr6 12091452 12091756 -170323486 + AluJo SINE Alu 1 312 0 1093 206 73 24 chr6 12091756 12091934 -170323308 + MER58B DNA MER1_type 102 301 -40 751 184 0 84 chr6 12092336 12092515 -170322727 - MER5B DNA MER1_type -14 164 1 1138 131 0 29 chr6 12092846 12093021 -170322221 + AluJo SINE Alu 121 290 -22 221 288 72 24 chr6 12093109 12093234 -170322008 - L2 LINE L2 -773 2541 2411 909 91 0 15 chr6 12093414 12093546 -170321696 - L1PA10 LINE L1 -4 6164 6035 25 0 0 0 chr6 12093637 12093662 -170321580 + AT_rich Low_complexity Low_complexity 1 25 0 3390 256 94 13 chr6 12093753 12095012 -170320230 + L1MCc LINE L1 188 1564 -4858 1224 242 27 67 chr6 12095027 12095691 -170319551 + L1MCc LINE L1 1735 2569 -4553 254 298 106 11 chr6 12097018 12097112 -170318130 - MIR SINE MIR -69 139 37 966 196 105 24 chr6 12097309 12097518 -170317724 - MER8 DNA MER2_type 0 239 14 3305 157 65 25 chr6 12097521 12098157 -170317085 + LTR51 LTR ERV1 11 671 0 21 0 0 0 chr6 12098428 12098449 -170316793 + AT_rich Low_complexity Low_complexity 1 21 0 300 321 66 7 chr6 12098480 12098617 -170316625 - MER5A DNA MER1_type -27 162 18 216 352 77 0 chr6 12098929 12099020 -170316222 + L2 LINE L2 3158 3255 -17 1320 213 163 42 chr6 12099203 12099682 -170315560 + MLT1F LTR MaLR 6 542 0 601 255 13 13 chr6 12099867 12100016 -170315226 + MIR SINE MIR 112 260 -2 2100 108 10 10 chr6 12100145 12100442 -170314800 + AluSx SINE Alu 1 297 -15 809 144 0 0 chr6 12100479 12100597 -170314645 + FLAM_C SINE Alu 1 118 -25 2554 53 0 0 chr6 12100934 12101236 -170314006 - AluY SINE Alu -9 302 1 229 286 48 0 chr6 12101383 12101446 -170313796 + MIR SINE MIR 186 251 -11 7157 47 52 24 chr6 12101531 12102609 -170312633 - L1PA5 LINE L1 0 6154 5066 1573 184 100 10 chr6 12103515 12103739 -170311503 + MER44D DNA MER2_type 1 203 -2288 6754 126 66 14 chr6 12103739 12104582 -170310660 - Tigger3b DNA MER2_type -1797 1231 310 2298 59 0 21 chr6 12104582 12104868 -170310374 - AluY SINE Alu -5 306 27 6754 126 66 14 chr6 12104868 12105195 -170310047 - Tigger3b DNA MER2_type -2718 310 1 1573 184 100 10 chr6 12105195 12105280 -170309962 + MER44D DNA MER2_type 203 608 -1 423 0 0 0 chr6 12105308 12105355 -170309887 + (CA)n Simple_repeat Simple_repeat 2 48 0 1277 146 78 0 chr6 12106228 12106447 -170308795 - MER46A DNA MER2_type 0 236 1 262 341 45 11 chr6 12106505 12106593 -170308649 + MIR SINE MIR 19 109 -99 310 292 193 12 chr6 12107053 12107214 -170308028 + MIR SINE MIR 63 252 -10 327 256 112 56 chr6 12107363 12107488 -170307754 - L2 LINE L2 -4 3268 3137 508 285 220 0 chr6 12107603 12107803 -170307439 + MIR SINE MIR 7 250 -12 14161 114 52 18 chr6 12108442 12110781 -170304461 + Tigger1 DNA MER2_type 1 2418 0 349 314 121 54 chr6 12112385 12112774 -170302468 - L1M2 LINE L1 -5894 955 541 312 290 108 89 chr6 12112396 12113272 -170301970 + L1M2 LINE L1 677 1407 -5442 * 252 312 101 9 chr6 12114277 12114386 -170300856 - MIR3 SINE MIR -5 203 85 256 151 132 0 chr6 12114702 12114755 -170300487 + L2 LINE L2 3250 3309 -4 202 337 12 36 chr6 12115094 12115177 -170300065 + L3b LINE CR1 1379 1459 -124 377 98 0 0 chr6 12115459 12115510 -170299732 - THE1B-int LTR MaLR -1528 52 2 1083 110 27 82 chr6 12115512 12115731 -170299511 - THE1B LTR MaLR -1 363 157 2305 68 0 0 chr6 12115745 12116040 -170299202 - THE1-int LTR MaLR 0 1580 1286 521 202 28 90 chr6 12116146 12116324 -170298918 - MER96B DNA MER1_type? -1 416 250 * 556 167 0 0 chr6 12116217 12116337 -170298905 + MER96B DNA MER1_type? 60 179 -238 355 281 104 45 chr6 12116633 12116921 -170298321 - L1M4 LINE L1 -3587 2559 2255 378 308 0 54 chr6 12117326 12117456 -170297786 + MIR SINE MIR 32 154 -108 277 299 84 0 chr6 12117506 12117613 -170297629 + MIR SINE MIR 147 262 0 21 36 0 0 chr6 12117617 12117645 -170297597 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 12117670 12117691 -170297551 + AT_rich Low_complexity Low_complexity 1 21 0 1562 197 181 29 chr6 12118154 12118601 -170296641 - MLT2B1 LTR ERVL -1 519 5 420 274 127 0 chr6 12118752 12118909 -170296333 - MIR SINE MIR -6 256 80 880 245 129 19 chr6 12119034 12119360 -170295882 + MLT1J1 LTR MaLR 1 357 -93 2248 139 30 3 chr6 12119376 12119873 -170295369 + LTR24B LTR ERV1 1 569 -7 40 27 0 41 chr6 12120346 12120419 -170294823 + AT_rich Low_complexity Low_complexity 1 70 0 5400 163 32 8 chr6 12120420 12120695 -170294547 - L1MA3 LINE L1 0 6305 6038 2249 111 0 0 chr6 12120695 12120993 -170294249 - AluSq SINE Alu -15 298 1 5400 163 32 8 chr6 12120993 12122373 -170292869 - L1MA3 LINE L1 -267 6038 4611 355 182 82 12 chr6 12122655 12122797 -170292445 + (TA)n Simple_repeat Simple_repeat 1 132 -1736 6393 141 78 18 chr6 12122797 12123687 -170291555 - Tigger3b DNA MER2_type -1798 1230 252 2124 112 7 3 chr6 12123687 12123982 -170291260 - AluSx SINE Alu -16 296 1 6393 141 78 18 chr6 12123982 12124250 -170290992 - Tigger3b DNA MER2_type -2776 252 2 355 182 82 12 chr6 12124250 12124402 -170290840 + (TA)n Simple_repeat Simple_repeat 132 1868 0 599 297 107 10 chr6 12125590 12125890 -170289352 - MARNA DNA Mariner -194 392 64 741 172 0 0 chr6 12126227 12126355 -170288887 - FLAM_A SINE Alu -5 128 1 320 231 164 0 chr6 12126356 12126460 -170288782 - MIR SINE MIR -14 248 128 2035 192 63 18 chr6 12126460 12126902 -170288340 - MLT1C LTR MaLR 0 467 6 182 338 108 43 chr6 12127747 12127978 -170287264 + L2 LINE L2 2817 3062 -210 2184 117 3 3 chr6 12128855 12129154 -170286088 + AluSx SINE Alu 1 299 -13 5867 128 8 3 chr6 12129322 12130236 -170285006 + L1PA16 LINE L1 5238 6157 -9 25 0 0 0 chr6 12130236 12130261 -170284981 + AT_rich Low_complexity Low_complexity 1 25 0 2189 101 0 3 chr6 12130475 12130761 -170284481 - AluSg SINE Alu -25 285 1 311 289 26 58 chr6 12131701 12131857 -170283385 + L1ME4a LINE L1 5966 6116 -5 1150 254 191 9 chr6 12132036 12132816 -170282426 - L1ME LINE L1 -1200 4880 3885 5190 120 6 8 chr6 12132833 12133636 -170281606 - L1PB4 LINE L1 -6 6150 5349 21 0 0 0 chr6 12133884 12133905 -170281337 + AT_rich Low_complexity Low_complexity 1 21 0 3433 260 74 48 chr6 12136557 12137070 -170278172 - L1ME LINE L1 -2451 3629 3131 2156 132 0 0 chr6 12137070 12137381 -170277861 - AluSx SINE Alu -1 311 1 3433 260 74 48 chr6 12137381 12138900 -170276342 - L1ME LINE L1 -2949 3131 1654 2313 103 0 3 chr6 12138900 12139210 -170276032 + AluSc SINE Alu 1 309 0 3433 260 74 48 chr6 12139210 12140702 -170274540 - L1ME LINE L1 -4426 1654 19 317 276 191 0 chr6 12140850 12140955 -170274287 - L2 LINE L2 0 3272 3148 811 141 4 150 chr6 12140955 12141182 -170274060 - MER3 DNA MER1_type 0 209 16 258 367 108 25 chr6 12141455 12141741 -170273501 - L2 LINE L2 -854 2460 2151 200 237 0 0 chr6 12141766 12141804 -170273438 - MIR SINE MIR -30 232 195 671 222 119 11 chr6 12141845 12142030 -170273212 + MIR SINE MIR 47 251 -11 195 69 0 0 chr6 12142039 12142068 -170273174 + (TTA)n Simple_repeat Simple_repeat 1 29 0 235 288 220 0 chr6 12142076 12142194 -170273048 - MIR SINE MIR -71 191 48 269 336 67 8 chr6 12142900 12143019 -170272223 - L2 LINE L2 -1 3312 3187 22 106 0 0 chr6 12143139 12143224 -170272018 + AT_rich Low_complexity Low_complexity 1 85 0 319 216 40 0 chr6 12143306 12143380 -170271862 + L1MC4a LINE L1 6378 6454 -1354 * 474 271 50 13 chr6 12143357 12143582 -170271660 + L1MC4 LINE L1 6338 6616 -1221 6011 102 14 7 chr6 12143600 12145422 -170269820 - L1PA15 LINE L1 0 6165 4330 324 249 97 54 chr6 12145454 12145639 -170269603 + L1MCc LINE L1 82 274 -6149 * 5697 242 40 44 chr6 12145619 12146418 -170268824 + L1MCc LINE L1 1980 2781 -4160 2360 74 3 23 chr6 12146418 12146728 -170268514 - AluY SINE Alu -7 304 1 5697 242 40 44 chr6 12146728 12146961 -170268281 + L1MCc LINE L1 2781 3013 -3928 817 226 0 0 chr6 12146961 12147125 -170268117 + U1 snRNA snRNA 1 164 -1 5697 242 40 44 chr6 12147125 12147752 -170267490 + L1MCc LINE L1 3013 3641 -3300 2187 95 3 33 chr6 12147752 12148057 -170267185 + AluSx SINE Alu 1 296 -16 5697 242 40 44 chr6 12148057 12148875 -170266367 + L1MCc LINE L1 3641 4461 -2480 2299 105 0 0 chr6 12148875 12149170 -170266072 - AluSx SINE Alu -17 295 1 5697 242 40 44 chr6 12149170 12149934 -170265308 + L1MCc LINE L1 4461 5291 -1650 401 296 85 27 chr6 12149938 12150137 -170265105 + MIR SINE MIR 33 252 -10 515 283 14 0 chr6 12150261 12150406 -170264836 + LTR16B LTR ERVL 1 147 -317 412 246 82 8 chr6 12150409 12150531 -170264711 + HERV16 LTR ERVL 1108 1238 -3758 1866 308 66 21 chr6 12150561 12152012 -170263230 + HERV16 LTR ERVL 1453 3018 -1978 2356 61 0 10 chr6 12152012 12152309 -170262933 + AluY SINE Alu 1 294 -17 1866 308 66 21 chr6 12152309 12152385 -170262857 + HERV16 LTR ERVL 3018 3089 -1907 796 311 20 17 chr6 12152388 12152684 -170262558 - LTR16B LTR ERVL -131 333 37 276 77 0 0 chr6 12152776 12152815 -170262427 + (TG)n Simple_repeat Simple_repeat 1 39 0 421 185 146 92 chr6 12152818 12153078 -170262164 - LTR37B LTR ERV1 -58 410 137 917 217 5 51 chr6 12153097 12153314 -170261928 + MER20 DNA MER1_type 7 213 -6 261 171 0 0 chr6 12153338 12153379 -170261863 - LTR37B LTR ERV1 -376 92 52 1090 280 72 45 chr6 12153485 12154064 -170261178 + MLT1G1 LTR MaLR 1 595 0 2251 94 14 0 chr6 12156861 12157158 -170258084 + AluSx SINE Alu 1 301 -11 365 186 12 58 chr6 12158256 12158342 -170256900 + MER8 DNA MER2_type 158 239 0 240 309 106 11 chr6 12158539 12158633 -170256609 + MIR SINE MIR 37 139 -69 1224 242 27 67 chr6 12159960 12160624 -170254618 - L1MCc LINE L1 -4553 2569 1735 3329 257 89 18 chr6 12160639 12160908 -170254334 - L1MCc LINE L1 -4858 1564 1315 2874 0 0 0 chr6 12160908 12161215 -170254027 + AluY SINE Alu 1 307 -4 3329 257 89 18 chr6 12161215 12162218 -170253024 - L1MCc LINE L1 -5107 1315 188 25 0 0 0 chr6 12162309 12162334 -170252908 + AT_rich Low_complexity Low_complexity 1 25 0 909 91 0 15 chr6 12162425 12162557 -170252685 + L1PA10 LINE L1 6035 6164 -4 221 288 72 24 chr6 12162737 12162862 -170252380 + L2 LINE L2 2411 2541 -773 1138 131 0 29 chr6 12162950 12163125 -170252117 - AluJo SINE Alu -22 290 121 751 184 0 84 chr6 12163456 12163635 -170251607 + MER5B DNA MER1_type 1 164 -14 1187 206 73 24 chr6 12164037 12164215 -170251027 - MER58B DNA MER1_type -2119 301 102 1629 181 40 13 chr6 12164215 12164519 -170250723 - AluJo SINE Alu 0 312 1 1187 206 73 24 chr6 12164519 12164627 -170250615 - MER58B DNA MER1_type -2318 102 1 28 0 0 0 chr6 12164863 12164891 -170250351 + AT_rich Low_complexity Low_complexity 1 28 0 208 194 0 0 chr6 12165123 12165159 -170250083 - MER5B DNA MER1_type -142 36 1 1940 90 7 29 chr6 12165190 12165468 -170249774 - AluY SINE Alu -2 309 38 804 179 0 8 chr6 12165498 12165632 -170249610 + FLAM_A SINE Alu 1 133 0 24 32 0 0 chr6 12167297 12167328 -170247914 + AT_rich Low_complexity Low_complexity 1 31 0 1325 190 65 27 chr6 12167607 12167944 -170247298 - L1MD2 LINE L1 -1 6358 6009 23 33 0 0 chr6 12168024 12168054 -170247188 + AT_rich Low_complexity Low_complexity 1 30 0 1831 108 4 0 chr6 12168091 12168331 -170246911 + AluSp SINE Alu 3 243 -70 1186 198 49 64 chr6 12168384 12168712 -170246530 - MER21A LTR ERV1 -65 866 544 1793 171 0 16 chr6 12168717 12169021 -170246221 + AluJo SINE Alu 1 299 -13 2155 127 46 16 chr6 12169021 12169391 -170245851 - L1MB2 LINE L1 -257 5914 5534 282 177 63 13 chr6 12170545 12170624 -170244618 - MIR SINE MIR -13 249 167 3121 180 83 9 chr6 12171505 12172188 -170243054 - MER50 LTR ERV1 0 734 1 226 315 24 39 chr6 12172812 12172939 -170242303 - L2 LINE L2 -460 2854 2730 310 349 9 0 chr6 12173015 12173124 -170242118 + L2 LINE L2 3200 3309 -4 279 273 0 39 chr6 12173125 12173202 -170242040 + polypurine Low_complexity Low_complexity 2 75 0 203 189 0 0 chr6 12173459 12173496 -170241746 + (TA)n Simple_repeat Simple_repeat 2 38 0 413 304 44 15 chr6 12174015 12174488 -170240754 - L1ME LINE L1 -683 5481 4996 825 209 78 29 chr6 12174495 12174701 -170240541 - MER58A DNA MER1_type 0 224 9 519 290 85 37 chr6 12174803 12175368 -170239874 - L1ME LINE L1 -1242 4904 4313 365 285 65 46 chr6 12175560 12175820 -170239422 + L1ME3A LINE L1 3414 3678 -2468 858 203 56 10 chr6 12175877 12176074 -170239168 - MER58 DNA MER1_type -133 208 3 849 200 0 0 chr6 12176211 12176366 -170238876 - FRAM SINE Alu -2 174 20 976 262 76 67 chr6 12176731 12177399 -170237843 + L1ME3A LINE L1 5166 5842 -328 254 132 19 0 chr6 12177802 12177855 -170237387 + (CATA)n Simple_repeat Simple_repeat 3 56 0 383 305 134 25 chr6 12177877 12178116 -170237126 - L1MC4a LINE L1 -1903 5905 5641 491 238 47 35 chr6 12178223 12178395 -170236847 - L1MC4a LINE L1 -1070 5076 4903 572 271 173 0 chr6 12178444 12178658 -170236584 - MIR SINE MIR -2 260 10 535 284 80 20 chr6 12179094 12179295 -170235947 + MIR SINE MIR 28 240 -22 196 231 39 19 chr6 12179740 12179792 -170235450 + L3 LINE CR1 1514 1566 -11 36 53 0 0 chr6 12180016 12180073 -170235169 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr6 12183407 12183436 -170231806 + AT_rich Low_complexity Low_complexity 1 29 0 630 279 95 14 chr6 12184250 12184472 -170230770 + MIR SINE MIR 5 244 -18 2264 107 7 0 chr6 12185047 12185356 -170229886 - AluSp SINE Alu -2 311 1 23 54 0 0 chr6 12188004 12188041 -170227201 + AT_rich Low_complexity Low_complexity 1 37 0 1353 127 42 5 chr6 12188706 12188919 -170226323 + AluSg/x SINE Alu 81 301 -9 468 267 112 21 chr6 12189025 12189212 -170226030 - MIR SINE MIR -2 260 57 864 183 14 0 chr6 12189901 12190043 -170225199 - FRAM SINE Alu -32 144 1 636 211 8 15 chr6 12190233 12190366 -170224876 - FLAM_A SINE Alu -1 132 1 605 182 16 33 chr6 12191055 12191176 -170224066 - FLAM_A SINE Alu -11 131 13 300 327 40 0 chr6 12191280 12191381 -170223861 + MIR SINE MIR 39 143 -65 2071 116 0 7 chr6 12192063 12192355 -170222887 + AluSx SINE Alu 11 300 -12 4711 61 10 0 chr6 12192543 12193151 -170222091 - L1PA8A LINE L1 -4 6127 5514 200 247 79 34 chr6 12193209 12193298 -170221944 + MIR SINE MIR 47 139 -123 277 250 29 0 chr6 12193597 12193665 -170221577 - MIR SINE MIR -111 151 82 2413 85 0 0 chr6 12193753 12194048 -170221194 - AluSq SINE Alu -18 295 1 1909 159 17 43 chr6 12195821 12196098 -170219144 - MER1B DNA MER1_type -2373 337 69 2555 39 0 3 chr6 12196098 12196408 -170218834 - AluY SINE Alu -2 309 1 1909 159 17 43 chr6 12196408 12196476 -170218766 - MER1B DNA MER1_type -2641 69 1 2308 49 0 29 chr6 12196505 12196812 -170218430 - AluY SINE Alu -12 299 2 312 297 25 0 chr6 12196857 12196975 -170218267 - MER103 DNA DNA -10 156 36 1886 115 0 0 chr6 12197166 12197427 -170217815 - AluSx SINE Alu -51 261 1 452 253 99 12 chr6 12198185 12198347 -170216895 + MIR SINE MIR 13 188 -74 1691 152 3 7 chr6 12198573 12198862 -170216380 - AluJo SINE Alu -24 288 1 1201 206 42 36 chr6 12200457 12200763 -170214479 + L1MC4 LINE L1 7735 8042 0 28 48 0 0 chr6 12200818 12200860 -170214382 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr6 12201373 12201410 -170213832 + (T)n Simple_repeat Simple_repeat 1 37 0 2266 74 3 3 chr6 12201425 12201722 -170213520 + AluY SINE Alu 2 298 -13 634 190 0 0 chr6 12201725 12201846 -170213396 - L1MA8 LINE L1 -3 6288 6168 396 161 99 0 chr6 12201846 12201927 -170213315 - Tigger3(Golem) DNA MER2_type -1 3028 2940 * 1404 216 87 0 chr6 12201925 12202235 -170213007 - Tigger3(Golem) DNA MER2_type -2692 337 1 3410 139 66 14 chr6 12202235 12202855 -170212387 - L1MA8 LINE L1 -121 6170 5519 31 0 0 0 chr6 12203272 12203303 -170211939 + AT_rich Low_complexity Low_complexity 1 31 0 1730 168 109 64 chr6 12203596 12204036 -170211206 - MER31B LTR ERV1 -6 460 1 1040 185 69 14 chr6 12204142 12204477 -170210765 + MER31B LTR ERV1 1 466 0 2160 95 0 0 chr6 12204713 12204998 -170210244 + AluSg SINE Alu 1 285 -25 307 305 0 0 chr6 12205826 12205908 -170209334 + CT-rich Low_complexity Low_complexity 4 85 0 780 156 50 0 chr6 12206380 12206521 -170208721 - L1MA9 LINE L1 -5 6307 6160 2193 103 3 3 chr6 12206549 12206861 -170208381 - AluSx SINE Alu 0 312 1 490 183 11 48 chr6 12209851 12210037 -170205205 + GA-rich Low_complexity Low_complexity 2 180 0 343 281 83 0 chr6 12213196 12213317 -170201925 - L2 LINE L2 0 3313 3183 203 223 54 27 chr6 12213664 12213770 -170201472 + (TA)n Simple_repeat Simple_repeat 2 111 0 1564 210 74 0 chr6 12213770 12214094 -170201148 - MER7A DNA MER2_type 0 346 1 3661 196 70 78 chr6 12215591 12216199 -170199043 + MER45B DNA AcHobo 40 651 -930 2210 102 0 0 chr6 12216199 12216519 -170198723 + AluSx SINE Alu 1 320 0 3661 196 70 78 chr6 12216519 12216654 -170198588 + MER45B DNA AcHobo 651 786 -795 1898 122 0 20 chr6 12216654 12216983 -170198259 - AluSx SINE Alu 0 323 1 3661 196 70 78 chr6 12216983 12217226 -170198016 + MER45B DNA AcHobo 786 1024 -16 249 200 40 0 chr6 12217366 12217416 -170197826 - LTR16C LTR ERVL 0 491 440 2271 141 10 28 chr6 12217673 12218070 -170197172 + MLT1B LTR MaLR 1 390 0 585 283 21 16 chr6 12218183 12218370 -170196872 + MIR SINE MIR 26 213 -49 366 325 55 30 chr6 12218580 12218780 -170196462 - MIR SINE MIR -19 243 39 239 299 59 75 chr6 12218832 12219019 -170196223 - MIR SINE MIR -78 184 1 523 301 54 12 chr6 12219181 12219347 -170195895 + MIR3 SINE MIR 25 197 -11 416 315 167 0 chr6 12220357 12220519 -170194723 + MER5A DNA MER1_type 1 189 0 237 33 0 0 chr6 12220905 12220935 -170194307 + (CA)n Simple_repeat Simple_repeat 2 31 0 896 9 0 0 chr6 12221087 12221193 -170194049 + AluY SINE Alu 206 311 0 195 42 0 0 chr6 12221727 12221751 -170193491 + (TG)n Simple_repeat Simple_repeat 2 25 0 320 215 54 75 chr6 12221766 12221859 -170193383 - L1MC4 LINE L1 -1339 6703 6613 320 284 20 100 chr6 12221911 12222161 -170193081 + L1MCa LINE L1 1980 2209 -4217 216 100 67 33 chr6 12222162 12222222 -170193020 + (TA)n Simple_repeat Simple_repeat 1 62 0 317 246 112 76 chr6 12222228 12222452 -170192790 - L1MCa LINE L1 -4215 2211 1980 230 127 56 0 chr6 12222479 12222550 -170192692 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 315 246 18 61 chr6 12222613 12222727 -170192515 + L1MC4 LINE L1 6613 6721 -1321 * 345 198 81 63 chr6 12222650 12222761 -170192481 - L1MC4 LINE L1 -1321 6721 6609 343 223 23 23 chr6 12222762 12222892 -170192350 + (TA)n Simple_repeat Simple_repeat 1 130 0 2303 178 85 17 chr6 12223158 12223631 -170191611 - MLT1D LTR MaLR 0 505 1 2261 107 3 0 chr6 12224006 12224314 -170190928 + AluSq SINE Alu 1 309 -4 655 239 90 50 chr6 12225097 12225298 -170189944 - MER63A DNA MER1_type -1 209 1 283 323 15 8 chr6 12226992 12227125 -170188117 - L2 LINE L2 -785 2529 2396 307 257 50 30 chr6 12227495 12227596 -170187646 - L2 LINE L2 -1 3271 3169 1547 144 95 25 chr6 12227687 12227972 -170187270 - MLT1B LTR MaLR -85 305 1 7897 19 0 1 chr6 12228632 12230124 -170185118 - L1PA3 LINE L1 -3 6152 4660 651 267 224 0 chr6 12230974 12231255 -170183987 - LTR16A LTR ERVL -2 448 105 2037 161 45 29 chr6 12231257 12231678 -170183564 - MSTA LTR MaLR 0 428 1 345 313 92 54 chr6 12231856 12232270 -170182972 - MLT1L LTR MaLR -27 588 54 1582 107 0 0 chr6 12232547 12232762 -170182480 + AluSq SINE Alu 83 297 -16 350 328 79 6 chr6 12232762 12232939 -170182303 - L2 LINE L2 -954 2360 2171 1392 217 23 54 chr6 12233930 12234317 -170180925 + MLT1C LTR MaLR 53 427 -40 2197 114 0 0 chr6 12234352 12234658 -170180584 + AluSc SINE Alu 1 306 -3 255 257 88 80 chr6 12234997 12235110 -170180132 - MIR SINE MIR -39 223 110 477 162 0 178 chr6 12236318 12236509 -170178733 + MER69A DNA AcHobo 1 157 -20 219 148 33 16 chr6 12237103 12237164 -170178078 + CT-rich Low_complexity Low_complexity 2 63 0 288 316 13 0 chr6 12238082 12238161 -170177081 - L2 LINE L2 -2 3311 3232 289 248 132 25 chr6 12238631 12238752 -170176490 + MIR SINE MIR 118 251 -11 238 299 0 15 chr6 12239802 12239869 -170175373 - L2 LINE L2 -5 3308 3243 498 299 13 56 chr6 12240014 12240248 -170174994 - MARNA DNA Mariner -351 235 12 1507 118 12 16 chr6 12240637 12240882 -170174360 + AluJo SINE Alu 51 294 -18 415 28 0 56 chr6 12240991 12241063 -170174179 + SVA Other Other 1319 1386 0 24 67 0 0 chr6 12241072 12241117 -170174125 + AT_rich Low_complexity Low_complexity 1 45 0 343 323 21 0 chr6 12241982 12242075 -170173167 + MIR3 SINE MIR 86 180 -28 1089 127 0 0 chr6 12242956 12243113 -170172129 - AluSc SINE Alu -19 290 134 351 292 120 85 chr6 12243748 12244149 -170171093 + L2 LINE L2 2858 3272 0 215 133 22 0 chr6 12244411 12244456 -170170786 + (TG)n Simple_repeat Simple_repeat 1 46 0 540 175 108 0 chr6 12245841 12245961 -170169281 - MIR3 SINE MIR -5 203 71 2378 123 29 56 chr6 12246783 12246944 -170168298 + THE1B LTR MaLR 1 165 -199 2186 62 80 0 chr6 12246944 12247218 -170168024 - AluY SINE Alu -15 296 1 2378 123 29 56 chr6 12247218 12247430 -170167812 + THE1B LTR MaLR 165 364 0 220 250 0 33 chr6 12248513 12248573 -170166669 - MIR SINE MIR -66 142 85 1792 173 10 0 chr6 12249094 12249389 -170165853 + 7SLRNA srpRNA srpRNA 20 317 -3 2009 134 7 3 chr6 12249547 12249837 -170165405 + AluSc SINE Alu 1 291 -18 2310 105 0 0 chr6 12250939 12251234 -170164008 + AluSq SINE Alu 1 295 -18 182 260 160 50 chr6 12251454 12251554 -170163688 - L2 LINE L2 -7 3265 3155 375 297 48 41 chr6 12252504 12252675 -170162567 - MIR3 SINE MIR -15 193 20 740 233 0 11 chr6 12252722 12252898 -170162344 - L1MB8 LINE L1 0 6178 6005 227 231 0 19 chr6 12252900 12252952 -170162290 - L1MB8 LINE L1 -790 5384 5334 625 198 23 4 chr6 12252955 12253088 -170162154 - L1MB8 LINE L1 -170 5994 5857 1166 93 0 0 chr6 12253088 12253239 -170162003 - AluY SINE Alu -3 308 158 3241 170 35 29 chr6 12253239 12253686 -170161556 - L1MB8 LINE L1 -299 5879 5427 5507 109 30 8 chr6 12253686 12254449 -170160793 + LTR17 LTR ERV1 1 780 0 3241 170 35 29 chr6 12254449 12254732 -170160510 - L1MB8 LINE L1 -751 5427 5147 210 37 0 0 chr6 12256242 12256269 -170158973 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 186 269 179 8 chr6 12256270 12256404 -170158838 - L2 LINE L2 -14 3299 3143 330 304 88 48 chr6 12256442 12256715 -170158527 - MLT1L LTR MaLR -330 285 2 2062 107 0 0 chr6 12257113 12257385 -170157857 - AluSx SINE Alu -32 280 9 1147 68 0 0 chr6 12257396 12257529 -170157713 - AluSq/x SINE Alu -179 133 1 2348 79 10 10 chr6 12257539 12257844 -170157398 - AluSp SINE Alu -8 305 1 208 322 122 0 chr6 12257971 12258061 -170157181 - MIR SINE MIR -115 147 47 474 33 0 0 chr6 12258391 12258451 -170156791 + (TG)n Simple_repeat Simple_repeat 2 61 0 1462 168 50 21 chr6 12259072 12259352 -170155890 + AluJo SINE Alu 2 289 -23 348 297 74 34 chr6 12259469 12259644 -170155598 + MIR3 SINE MIR 4 185 -23 1153 43 21 0 chr6 12260560 12260701 -170154541 - AluY SINE Alu 0 311 168 225 94 0 0 chr6 12261483 12261515 -170153727 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 315 302 47 120 chr6 12261520 12261987 -170153255 - L2 LINE L2 -16 3256 2824 288 0 0 0 chr6 12262062 12262094 -170153148 + (CA)n Simple_repeat Simple_repeat 2 33 0 376 329 43 14 chr6 12262159 12262366 -170152876 - HERVL LTR ERVL -3685 1969 1757 288 304 60 15 chr6 12262874 12263075 -170152167 - HERVL LTR ERVL -4577 1187 978 263 344 16 0 chr6 12263368 12263490 -170151752 - HERVL LTR ERVL -5178 586 463 626 304 50 5 chr6 12263602 12263803 -170151439 + LTR16C LTR ERVL 50 259 -232 2010 142 30 0 chr6 12263805 12264107 -170151135 - AluSx SINE Alu -1 311 1 259 339 157 0 chr6 12264625 12264740 -170150502 + MIR3 SINE MIR 63 195 -13 247 246 0 0 chr6 12264745 12264802 -170150440 + GA-rich Low_complexity Low_complexity 3 59 0 416 306 82 20 chr6 12264812 12265008 -170150234 - MIR SINE MIR -54 208 1 466 222 187 12 chr6 12265407 12265578 -170149664 + L1ME3A LINE L1 5782 5982 -188 250 273 82 87 chr6 12265581 12265812 -170149430 + L1ME3A LINE L1 5924 6153 -17 1513 254 48 5 chr6 12265859 12266299 -170148943 + L1MD2 LINE L1 3375 3833 -2313 1523 129 21 0 chr6 12266306 12266539 -170148703 - AluSg/x SINE Alu -2 308 71 317 87 0 11 chr6 12266541 12266598 -170148644 - Alu SINE Alu -263 40 1 5630 125 16 3 chr6 12266608 12266913 -170148329 - L1PA16 LINE L1 -9 6157 5857 2130 135 6 0 chr6 12266913 12267224 -170148018 - AluSp SINE Alu 0 313 1 5630 125 16 3 chr6 12267224 12268519 -170146723 - L1PA16 LINE L1 -309 5857 4517 1555 182 40 17 chr6 12268544 12268840 -170146402 - MER61A LTR ERV1 -40 303 1 1189 224 54 62 chr6 12268845 12269234 -170146008 - L1 LINE L1 -1636 4510 4125 1102 243 68 0 chr6 12269234 12269514 -170145728 + L1P LINE L1 3826 4124 -2022 1061 209 13 125 chr6 12269510 12269923 -170145319 + L1MD2 LINE L1 5774 6074 -168 * 572 221 18 37 chr6 12269924 12270087 -170145155 + L1MD3 LINE L1 7835 7994 -1 574 325 140 62 chr6 12270090 12270700 -170144542 - L2 LINE L2 -621 2693 1993 321 89 357 0 chr6 12270700 12270756 -170144486 - MADE1 DNA Mariner 0 80 5 574 325 140 62 chr6 12270756 12271019 -170144223 - L2 LINE L2 -1321 1993 1752 1161 135 6 0 chr6 12271751 12271921 -170143321 - AluSg/x SINE Alu -13 297 127 872 144 0 0 chr6 12271947 12272072 -170143170 + AluSg SINE Alu 1 125 -185 246 116 0 0 chr6 12272402 12272445 -170142797 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 260 261 0 27 chr6 12272469 12272543 -170142699 - L1MD3 LINE L1 -21 8021 7897 732 164 246 29 chr6 12272554 12272761 -170142481 - L1MC4a LINE L1 -159 7649 7398 302 233 56 44 chr6 12273415 12273505 -170141737 - L2 LINE L2 0 3272 3182 294 354 102 48 chr6 12273560 12273805 -170141437 - L2 LINE L2 -358 2956 2683 3300 63 68 36 chr6 12273805 12274249 -170140993 - LTR22A LTR ERVK 0 458 1 294 354 102 48 chr6 12274249 12274376 -170140866 - L2 LINE L2 -631 2683 2564 672 223 57 11 chr6 12274452 12274627 -170140615 + MIR SINE MIR 61 243 -19 255 240 67 0 chr6 12274750 12274825 -170140417 - LTR67 LTR ERVL 0 557 478 3680 236 64 54 chr6 12274850 12277753 -170137489 + L1MEc LINE L1 44 3121 -3094 454 217 83 0 chr6 12277748 12277868 -170137374 + L1M4 LINE L1 4738 4867 -1279 * 273 289 138 19 chr6 12277886 12278045 -170137197 - LTR67 LTR ERVL -269 288 111 183 309 181 11 chr6 12278151 12278245 -170136997 + MIR SINE MIR 103 212 -50 2110 141 64 6 chr6 12278942 12279268 -170135974 - MER7A DNA MER2_type 0 346 4 2765 192 9 24 chr6 12279329 12279876 -170135366 - L1MC3 LINE L1 0 7785 7247 2180 127 7 86 chr6 12280705 12281123 -170134119 - MLT1B LTR MaLR 0 390 6 3169 233 61 31 chr6 12281125 12282186 -170133056 - Charlie2a DNA MER1_type -7 2855 1763 662 325 50 14 chr6 12282197 12282477 -170132765 - LTR16C LTR ERVL 0 491 202 3388 223 118 50 chr6 12282664 12282958 -170132284 - Charlie2a DNA MER1_type -1163 1699 1426 1968 144 7 10 chr6 12282958 12283263 -170131979 + AluJb SINE Alu 1 304 -8 3388 223 118 50 chr6 12283263 12284357 -170130885 - Charlie2a DNA MER1_type -1436 1426 217 608 293 95 16 chr6 12284446 12284763 -170130479 - L1MC/D LINE L1 -554 5616 5272 727 283 113 4 chr6 12284883 12285113 -170130129 - MIR SINE MIR -2 260 6 239 333 118 0 chr6 12285241 12285343 -170129899 - L2 LINE L2 -23 3249 3136 3644 119 20 6 chr6 12285440 12285944 -170129298 - MER9 LTR ERVK 0 511 1 218 326 240 27 chr6 12285956 12286214 -170129028 - L3 LINE CR1 -612 965 653 2052 238 57 2 chr6 12287499 12287994 -170127248 + Cheshire DNA MER1_type 27 548 -1872 * 7767 198 47 15 chr6 12287990 12289634 -170125608 + Cheshire DNA MER1_type 723 2420 0 1205 313 67 48 chr6 12289711 12290551 -170124691 - ERVL LTR ERVL -4146 1618 763 203 138 0 0 chr6 12290854 12290883 -170124359 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 773 208 167 67 chr6 12291236 12291416 -170123826 - LTR50 LTR ERVL -452 343 182 2056 102 9 78 chr6 12291416 12291748 -170123494 + AluSx SINE Alu 1 309 -3 773 208 167 67 chr6 12291748 12291879 -170123363 - LTR50 LTR ERVL -613 182 1 193 75 50 25 chr6 12292296 12292336 -170122906 + GA-rich Low_complexity Low_complexity 2 42 0 186 43 0 0 chr6 12293107 12293130 -170122112 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 399 41 0 0 chr6 12293129 12293178 -170122064 + (TG)n Simple_repeat Simple_repeat 2 50 0 398 344 13 0 chr6 12293398 12293549 -170121693 - MIR3 SINE MIR -2 206 54 5804 90 15 4 chr6 12294150 12294959 -170120283 + L1PA13 LINE L1 5346 6163 0 251 387 34 8 chr6 12295202 12295321 -170119921 + MIR3 SINE MIR 39 160 -48 1512 188 189 103 chr6 12295371 12295973 -170119269 + MLT1E1 LTR MaLR 1 654 0 674 211 0 0 chr6 12295973 12296116 -170119126 + FLAM_A SINE Alu 2 144 0 1733 152 157 11 chr6 12298114 12298477 -170116765 + MSTA LTR MaLR 1 416 -12 234 240 0 8 chr6 12299524 12299585 -170115657 + MIR SINE MIR 73 130 -78 323 341 32 0 chr6 12299876 12300002 -170115240 - L2 LINE L2 -4 3309 3180 1778 196 66 62 chr6 12300052 12300582 -170114660 + L1ME2 LINE L1 5631 6162 -2 402 237 21 57 chr6 12300581 12300775 -170114467 - L1M4 LINE L1 -1725 4421 4235 * 667 287 48 63 chr6 12300787 12300948 -170114294 - L1MEd LINE L1 -5014 1105 943 1798 180 20 3 chr6 12300948 12301253 -170113989 - AluSp SINE Alu -3 310 1 667 287 48 63 chr6 12301253 12301679 -170113563 - L1MEd LINE L1 -5176 943 527 1850 130 146 16 chr6 12302036 12302358 -170112884 + THE1B LTR MaLR 1 364 0 183 162 0 0 chr6 12302643 12302680 -170112562 + A-rich Low_complexity Low_complexity 1 37 0 700 207 0 0 chr6 12302818 12302939 -170112303 - FLAM_A SINE Alu -12 121 1 1725 251 83 21 chr6 12303037 12303520 -170111722 - MLT1F LTR MaLR -29 513 1 1750 267 33 100 chr6 12303520 12304194 -170111048 + L1MC4a LINE L1 5276 5903 -1905 1305 147 0 5 chr6 12304434 12304683 -170110559 + AluJo SINE Alu 87 334 0 210 344 0 0 chr6 12305023 12305084 -170110158 + L2 LINE L2 3250 3310 -3 306 0 0 0 chr6 12305448 12305482 -170109760 + (TA)n Simple_repeat Simple_repeat 2 35 0 2146 127 0 0 chr6 12305703 12306051 -170109191 + AluSx SINE Alu 1 312 0 186 319 56 44 chr6 12306667 12306827 -170108415 - MIR SINE MIR -13 249 88 962 205 5 30 chr6 12307752 12307952 -170107290 - MLT2D LTR ERVL 0 414 220 652 209 25 13 chr6 12308314 12308472 -170106770 + MER5B DNA MER1_type 10 169 -9 204 333 142 6 chr6 12308804 12308966 -170106276 + MIR SINE MIR 67 250 -12 1100 189 81 146 chr6 12309119 12309492 -170105750 + MLT1C LTR MaLR 53 449 -18 306 0 0 0 chr6 12309492 12309526 -170105716 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1963 103 0 48 chr6 12309526 12309818 -170105424 - AluSg SINE Alu -32 278 1 1100 189 81 146 chr6 12309818 12309887 -170105355 + MLT1C LTR MaLR 447 467 0 2295 97 3 3 chr6 12310763 12311063 -170104179 + AluSq SINE Alu 2 301 -12 372 263 63 74 chr6 12311725 12311915 -170103327 - MER112 DNA MER1_type -34 226 39 242 337 56 0 chr6 12312049 12312138 -170103104 - L2 LINE L2 -11 3261 3168 297 51 0 0 chr6 12312549 12312588 -170102654 + (CA)n Simple_repeat Simple_repeat 2 40 0 2071 153 0 0 chr6 12312765 12313066 -170102176 + AluSx SINE Alu 1 301 -11 2805 128 17 2 chr6 12314298 12314720 -170100522 - MSTA LTR MaLR 0 428 1 194 282 28 14 chr6 12314784 12314855 -170100387 - MIR SINE MIR -103 159 88 195 294 22 76 chr6 12315093 12315185 -170100057 - MIR SINE MIR -156 106 20 573 181 78 0 chr6 12315191 12315307 -170099935 + LTR64 LTR ERVK 1 125 -433 1570 160 111 0 chr6 12315308 12315596 -170099646 + LTR64 LTR ERVK 227 546 -12 263 185 0 136 chr6 12317298 12317343 -170097899 + MIR SINE MIR 76 107 -101 864 216 14 38 chr6 12317343 12317556 -170097686 - MER63A DNA MER1_type 0 210 3 263 185 0 136 chr6 12317556 12317591 -170097651 + MIR SINE MIR 107 145 -63 21 0 0 0 chr6 12319001 12319022 -170096220 + AT_rich Low_complexity Low_complexity 1 21 0 299 289 40 69 chr6 12319028 12319201 -170096041 + MIR3 SINE MIR 30 197 -11 1482 157 30 90 chr6 12320668 12321000 -170094242 - AluJo SINE Alu 0 312 1 2099 124 0 34 chr6 12321730 12322053 -170093189 - AluSx SINE Alu 0 312 1 181 277 21 0 chr6 12323013 12323060 -170092182 + MIR3 SINE MIR 123 170 -38 379 264 0 0 chr6 12324230 12324317 -170090925 + MER5A DNA MER1_type 20 106 -83 585 251 22 28 chr6 12324409 12324588 -170090654 - MER5B DNA MER1_type 0 178 1 433 338 27 5 chr6 12324919 12325138 -170090104 - MIR SINE MIR -25 237 14 1927 50 0 0 chr6 12325503 12325725 -170089517 - AluY SINE Alu -16 295 74 192 279 0 15 chr6 12326139 12326207 -170089035 - L2 LINE L2 -179 3093 3027 185 301 39 29 chr6 12326351 12326454 -170088788 - L2 LINE L2 -493 2821 2718 25 0 0 0 chr6 12326547 12326572 -170088670 + AT_rich Low_complexity Low_complexity 1 25 0 2141 108 0 3 chr6 12328804 12329119 -170086123 + AluSq SINE Alu 1 314 0 866 249 21 9 chr6 12329649 12329882 -170085360 + MIR SINE MIR 1 236 -26 235 175 0 0 chr6 12329974 12330014 -170085228 - MLT1I LTR MaLR 0 409 370 301 132 19 0 chr6 12330165 12330218 -170085024 + MER96 DNA MER1_type? 1 54 -121 4715 146 34 59 chr6 12330225 12330733 -170084509 + L1MB3 LINE L1 5165 5684 -499 1664 86 0 5 chr6 12330733 12330943 -170084299 + AluY SINE Alu 89 297 -14 4715 146 34 59 chr6 12330943 12331284 -170083958 + L1MB3 LINE L1 5684 5989 -194 2148 164 132 2 chr6 12331284 12331687 -170083555 + MSTB2 LTR MaLR 3 457 0 4715 146 34 59 chr6 12331687 12331875 -170083367 + L1MB3 LINE L1 5989 6180 -3 231 240 20 0 chr6 12331878 12331928 -170083314 + MER96 DNA MER1_type? 47 97 -78 2225 109 3 0 chr6 12332053 12332347 -170082895 - AluSg SINE Alu -15 295 1 510 173 0 0 chr6 12332932 12333036 -170082206 + GA-rich Low_complexity Low_complexity 1 104 0 402 305 78 95 chr6 12333387 12333797 -170081445 + L2 LINE L2 2867 3269 -3 413 308 8 8 chr6 12334699 12334816 -170080426 + MER5B DNA MER1_type 3 119 -59 247 257 112 107 chr6 12337978 12338165 -170077077 + MIR3 SINE MIR 16 203 -5 348 206 71 71 chr6 12338195 12338350 -170076892 + L2 LINE L2 2589 2743 -571 266 327 109 42 chr6 12338407 12338737 -170076505 + L2 LINE L2 2882 3233 -39 424 308 70 0 chr6 12339268 12339411 -170075831 - MER117 DNA MER1_type 0 197 45 1133 98 252 60 chr6 12341004 12341238 -170074004 - AluSg1 SINE Alu -30 279 1 240 231 0 0 chr6 12341248 12341326 -170073916 + (CA)n Simple_repeat Simple_repeat 2 79 0 494 321 0 22 chr6 12341365 12341549 -170073693 + (CA)n Simple_repeat Simple_repeat 1 180 0 439 217 39 39 chr6 12342995 12343124 -170072118 + MIR SINE MIR 86 214 -48 384 265 20 61 chr6 12346233 12346429 -170068813 + L1MC4 LINE L1 7854 8041 -1 2376 154 32 17 chr6 12348995 12349404 -170065838 + MSTB LTR MaLR 10 424 -2 243 0 0 0 chr6 12350198 12350225 -170065017 + (TC)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr6 12350224 12350251 -170064991 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 2330 105 3 0 chr6 12350812 12351117 -170064125 - AluSx SINE Alu -6 306 1 307 314 39 44 chr6 12351189 12351393 -170063849 - L2 LINE L2 -1000 2314 2112 1065 148 37 42 chr6 12351394 12351610 -170063632 - MER20 DNA MER1_type 0 219 5 987 298 127 53 chr6 12353455 12354775 -170060467 - L2 LINE L2 0 3313 1893 1703 182 10 3 chr6 12355880 12356176 -170059066 - AluJb SINE Alu -14 298 1 540 313 58 29 chr6 12356682 12357196 -170058046 - L1MEc LINE L1 -4614 1782 1254 236 247 65 65 chr6 12357196 12357350 -170057892 - L1MEc LINE L1 -5960 245 92 280 297 95 40 chr6 12357706 12357854 -170057388 - MLT2E LTR ERVL -425 203 48 245 406 0 0 chr6 12358048 12358149 -170057093 - MIR SINE MIR -78 130 30 1066 179 200 21 chr6 12361122 12361386 -170053856 + AluSx SINE Alu 1 307 0 677 98 59 0 chr6 12361513 12361615 -170053627 + L1MD1 LINE L1 6129 6236 -6 403 242 76 8 chr6 12361805 12361937 -170053305 + MIR3 SINE MIR 54 194 -14 1637 186 88 77 chr6 12362518 12362975 -170052267 + MLT1C LTR MaLR 6 467 0 2439 25 7 0 chr6 12363472 12363756 -170051486 + L1PA4 LINE L1 5867 6152 -3 22 0 0 0 chr6 12363756 12363778 -170051464 + AT_rich Low_complexity Low_complexity 1 22 0 2075 221 33 35 chr6 12364679 12365164 -170050078 + MLT1D LTR MaLR 7 490 -15 1186 260 54 59 chr6 12365279 12365876 -170049366 + L2 LINE L2 1860 2453 -861 711 326 120 13 chr6 12365955 12366467 -170048775 + L2 LINE L2 2747 3301 -12 367 272 33 82 chr6 12369721 12369905 -170045337 + MIR SINE MIR 46 220 -42 207 0 0 0 chr6 12369922 12369945 -170045297 + (A)n Simple_repeat Simple_repeat 1 23 0 1408 81 0 0 chr6 12370347 12370521 -170044721 - AluSp SINE Alu -5 308 135 1421 151 163 4 chr6 12372118 12372363 -170042879 + AluJb SINE Alu 2 285 -17 516 230 32 8 chr6 12374482 12374608 -170040634 + MER5A DNA MER1_type 25 153 -36 715 139 197 0 chr6 12374631 12374768 -170040474 + L1PA15 LINE L1 6001 6164 -1 278 156 172 115 chr6 12374932 12375054 -170040188 - MIR SINE MIR -11 251 123 668 176 0 29 chr6 12375225 12375361 -170039881 - MER5B DNA MER1_type -44 134 3 2189 114 69 32 chr6 12376662 12377038 -170038204 + MLT1B LTR MaLR 1 390 0 307 304 11 0 chr6 12377503 12377595 -170037647 - L3b LINE CR1 -84 1499 1407 192 269 19 0 chr6 12378108 12378160 -170037082 - L2 LINE L2 0 3272 3220 201 196 0 0 chr6 12378240 12378286 -170036956 + GA-rich Low_complexity Low_complexity 1 46 0 805 281 88 16 chr6 12378319 12378682 -170036560 - LTR16A LTR ERVL -3 447 59 363 256 141 16 chr6 12378741 12378862 -170036380 - MIR SINE MIR -125 137 2 2094 105 3 14 chr6 12379054 12379368 -170035874 + AluSg SINE Alu 1 311 0 433 328 29 0 chr6 12380340 12380511 -170034731 - MIR SINE MIR -39 223 48 189 0 0 0 chr6 12382274 12382295 -170032947 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 103 0 0 chr6 12382481 12382510 -170032732 + (TG)n Simple_repeat Simple_repeat 1 29 0 1947 185 14 11 chr6 12384996 12385358 -170029884 - MLT1A1 LTR MaLR -2 363 1 488 269 51 56 chr6 12385440 12385656 -170029586 - MIR SINE MIR 0 262 48 2195 158 42 37 chr6 12385656 12386199 -170029043 + MLT2A2 LTR ERVL 1 554 0 2686 20 0 7 chr6 12386289 12386585 -170028657 - AluY SINE Alu -17 294 1 25 31 0 0 chr6 12386922 12386954 -170028288 + AT_rich Low_complexity Low_complexity 1 32 0 36 91 0 0 chr6 12386999 12387098 -170028144 + AT_rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr6 12387203 12387231 -170028011 + AT_rich Low_complexity Low_complexity 1 28 0 358 283 116 47 chr6 12387692 12387968 -170027274 - L2 LINE L2 0 3313 3019 440 322 89 46 chr6 12387998 12388606 -170026636 + L2 LINE L2 2067 2700 -614 277 290 0 0 chr6 12389075 12389137 -170026105 + L2 LINE L2 3242 3303 -10 5590 131 26 46 chr6 12389139 12390005 -170025237 + L1MA8 LINE L1 5296 6139 -152 1797 176 17 0 chr6 12390005 12390300 -170024942 + AluJb SINE Alu 1 300 -12 5590 131 26 46 chr6 12390300 12390447 -170024795 + L1MA8 LINE L1 6139 6288 -3 218 296 91 23 chr6 12390595 12390683 -170024559 - L2 LINE L2 -64 3208 3115 235 231 176 33 chr6 12391553 12391644 -170023598 + LTR33 LTR ERVL 418 521 0 180 337 137 0 chr6 12391651 12391746 -170023496 + L2 LINE L2 3154 3261 -11 7253 152 17 0 chr6 12391752 12393912 -170021330 + LTR21B-int LTR ERV1 3071 5333 -1196 734 254 0 11 chr6 12394237 12394418 -170020824 + LTR21B-int LTR ERV1 4953 5131 -455 2076 304 32 36 chr6 12395233 12396296 -170018946 + LTR21B-int LTR ERV1 5471 6529 0 1901 164 8 106 chr6 12396296 12396778 -170018464 + LTR21B LTR ERV1 1 435 -3 4665 198 64 67 chr6 12396805 12397466 -170017776 - L1MDb LINE L1 -3873 2714 2052 2772 32 0 3 chr6 12397466 12397778 -170017464 + AluY SINE Alu 1 311 0 4665 198 64 67 chr6 12397778 12399079 -170016163 - L1MDb LINE L1 -4535 2052 750 522 191 12 0 chr6 12399079 12399163 -170016079 - MER20 DNA MER1_type -134 85 1 2231 113 0 0 chr6 12399550 12399859 -170015383 + AluSg SINE Alu 1 309 -1 581 323 4 71 chr6 12401321 12401380 -170013862 + MIR SINE MIR 10 71 -191 1963 113 11 11 chr6 12401380 12401662 -170013580 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr6 12401666 12401698 -170013544 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 581 323 4 71 chr6 12401698 12401902 -170013340 + MIR SINE MIR 74 260 -2 27 62 0 0 chr6 12402377 12402425 -170012817 + AT_rich Low_complexity Low_complexity 1 48 0 513 330 29 38 chr6 12402442 12402681 -170012561 - MIR SINE MIR 0 262 26 317 224 0 0 chr6 12402685 12402752 -170012490 + L1MC2 LINE L1 6259 6325 -19 22 0 0 0 chr6 12402755 12402777 -170012465 + AT_rich Low_complexity Low_complexity 1 22 0 370 175 0 0 chr6 12402939 12403002 -170012240 + MIR SINE MIR 199 261 -1 225 154 0 0 chr6 12403002 12403041 -170012201 + (CAT)n Simple_repeat Simple_repeat 1 39 0 902 184 54 11 chr6 12403861 12404046 -170011196 + MER3 DNA MER1_type 1 193 -16 524 250 10 0 chr6 12404047 12404151 -170011091 + MER81 DNA DNA 10 114 0 2097 101 0 11 chr6 12404383 12404669 -170010573 + AluSq SINE Alu 2 284 -29 2715 206 41 52 chr6 12404670 12404777 -170010465 - L1ME1 LINE L1 -108 6058 5951 1419 169 0 114 chr6 12404777 12405127 -170010115 - AluJo SINE Alu -2 310 1 2715 206 41 52 chr6 12405127 12405404 -170009838 - L1ME1 LINE L1 -215 5951 5672 744 188 0 39 chr6 12405404 12405532 -170009710 - FLAM_A SINE Alu -10 123 1 2715 206 41 52 chr6 12405532 12405820 -170009422 - L1ME1 LINE L1 -494 5672 5391 1802 181 3 7 chr6 12405820 12406118 -170009124 + AluJb SINE Alu 1 297 -15 2715 206 41 52 chr6 12406118 12406180 -170009062 - L1ME1 LINE L1 -775 5391 5330 338 131 16 16 chr6 12406183 12406244 -170008998 - AluJ/FRAM SINE Alu -10 292 232 393 103 35 0 chr6 12406249 12406307 -170008935 - MER41D LTR ERV1 0 557 498 288 0 0 0 chr6 12406309 12406341 -170008901 + (CA)n Simple_repeat Simple_repeat 2 33 0 229 238 12 12 chr6 12406341 12406425 -170008817 - L1MC4 LINE L1 -1347 6695 6612 240 188 0 43 chr6 12406442 12406511 -170008731 - L1MC4 LINE L1 -1340 6702 6637 322 229 14 0 chr6 12407284 12407354 -170007888 - Charlie7 DNA MER1_type -17 2595 2525 422 199 12 149 chr6 12407799 12407869 -170007373 - MER5A DNA MER1_type -1 188 151 1615 172 12 53 chr6 12407869 12408188 -170007054 + AluJo SINE Alu 1 306 -6 422 199 12 149 chr6 12408188 12408278 -170006964 - MER5A DNA MER1_type -38 151 50 3382 108 69 54 chr6 12409773 12410364 -170004878 + MER4A LTR ERV1 1 600 0 183 244 81 58 chr6 12411126 12411212 -170004030 - MER5A DNA MER1_type -25 164 77 486 281 8 9 chr6 12412706 12412852 -170002390 + MIR SINE MIR 9 152 -66 2449 154 65 0 chr6 12412977 12413379 -170001863 + MSTA LTR MaLR 1 428 0 4591 187 23 14 chr6 12413545 12413661 -170001581 + L1MB5 LINE L1 5169 5282 -892 2318 84 7 10 chr6 12413661 12413954 -170001288 + AluSc SINE Alu 1 294 -15 378 0 0 0 chr6 12413954 12413996 -170001246 + (CA)n Simple_repeat Simple_repeat 1 42 0 2318 84 7 10 chr6 12413996 12414012 -170001230 + AluSc SINE Alu 294 309 0 4591 187 23 14 chr6 12414012 12414025 -170001217 + L1MB5 LINE L1 5282 5293 -881 252 0 0 0 chr6 12414025 12414053 -170001189 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4591 187 23 14 chr6 12414053 12414914 -170000328 + L1MB5 LINE L1 5293 6165 -9 224 195 0 0 chr6 12417023 12417064 -169998178 - L2 LINE L2 -2 3311 3271 26 30 0 0 chr6 12417221 12417254 -169997988 + AT_rich Low_complexity Low_complexity 1 33 0 279 232 440 0 chr6 12418865 12418990 -169996252 - MER5A DNA MER1_type 0 189 10 283 269 201 13 chr6 12419027 12419176 -169996066 + MIR SINE MIR 36 212 -50 188 211 92 26 chr6 12421269 12421345 -169993897 + MIR SINE MIR 182 262 0 2462 65 0 10 chr6 12421759 12422066 -169993176 - AluSp SINE Alu -9 304 1 28 0 0 0 chr6 12422468 12422496 -169992746 + AT_rich Low_complexity Low_complexity 1 28 0 886 322 65 28 chr6 12423816 12424018 -169991224 - ERVL LTR ERVL -2422 3342 3149 1908 153 20 0 chr6 12424018 12424318 -169990924 - AluSx SINE Alu -4 308 3 886 322 65 28 chr6 12424318 12424547 -169990695 - ERVL LTR ERVL -2615 3149 2895 515 221 92 46 chr6 12424567 12424762 -169990480 + MLT1I LTR MaLR 206 409 0 415 270 51 15 chr6 12425071 12425208 -169990034 + MLT1L LTR MaLR 135 276 -339 198 360 40 8 chr6 12425469 12425594 -169989648 + L3b LINE CR1 1132 1260 -323 22 0 0 0 chr6 12427418 12427440 -169987802 + AT_rich Low_complexity Low_complexity 1 22 0 423 311 17 0 chr6 12427609 12427728 -169987514 + LTR16B LTR ERVL 104 224 -240 * 1014 163 34 25 chr6 12427707 12427980 -169987262 + MER2 DNA MER2_type 23 345 0 203 128 77 0 chr6 12428204 12428243 -169986999 + L2 LINE L2 2780 2821 -493 268 365 0 9 chr6 12428474 12428581 -169986661 + MIR SINE MIR 71 176 -86 237 302 198 0 chr6 12428583 12428679 -169986563 - L2 LINE L2 -2 3311 3197 291 276 16 87 chr6 12428872 12429057 -169986185 + L2 LINE L2 1745 1916 -1398 1073 138 147 22 chr6 12429061 12429251 -169985991 - MLT1B LTR MaLR 0 390 225 2098 98 4 0 chr6 12429251 12429527 -169985715 + AluSg SINE Alu 29 305 -5 1073 138 147 22 chr6 12429527 12429607 -169985635 - MLT1B LTR MaLR -165 225 1 180 387 86 39 chr6 12429629 12429885 -169985357 + L2 LINE L2 1941 2208 -1106 905 186 30 30 chr6 12430463 12430630 -169984612 + L1PB4 LINE L1 5990 6156 0 4106 131 20 30 chr6 12431104 12431352 -169983890 - L1MA4 LINE L1 -5 6295 6046 231 36 0 0 chr6 12431352 12431380 -169983862 + (TA)n Simple_repeat Simple_repeat 2 29 0 4106 131 20 30 chr6 12431380 12431738 -169983504 - L1MA4 LINE L1 -254 6046 5694 1502 155 7 81 chr6 12431738 12432048 -169983194 + AluJo SINE Alu 14 300 -12 4106 131 20 30 chr6 12432048 12432136 -169983106 - L1MA4 LINE L1 -606 5694 5607 1914 210 87 0 chr6 12432136 12432621 -169982621 - L1M2b LINE L1 -6681 528 2 866 174 0 0 chr6 12432775 12432907 -169982335 + FLAM_C SINE Alu 1 132 -1 189 0 0 0 chr6 12434261 12434282 -169980960 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 301 254 0 0 chr6 12434443 12434506 -169980736 - L2 LINE L2 -1 3271 3209 180 189 27 0 chr6 12434660 12434697 -169980545 - MIR SINE MIR -147 115 78 315 273 91 10 chr6 12435408 12435507 -169979735 - L2 LINE L2 -19 3253 3147 1020 119 150 10 chr6 12436071 12436264 -169978978 - MSTB1 LTR MaLR -23 409 190 3992 122 72 26 chr6 12436353 12437093 -169978149 - LTR1 LTR ERV1 0 785 12 206 292 0 0 chr6 12437626 12437674 -169977568 - L2 LINE L2 -11 3261 3214 2398 95 0 0 chr6 12438229 12438525 -169976717 - AluSc SINE Alu -13 296 1 2211 151 33 15 chr6 12438718 12439109 -169976133 - MSTB LTR MaLR -20 406 9 605 301 62 10 chr6 12440646 12440839 -169974403 + MIR3 SINE MIR 2 204 -4 302 321 36 27 chr6 12441377 12441489 -169973753 - MIR SINE MIR -77 131 19 186 71 0 0 chr6 12441502 12441530 -169973712 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1996 128 0 4 chr6 12441533 12441814 -169973428 - AluSx SINE Alu -32 280 1 32918 108 11 57 chr6 12441924 12448374 -169966868 + L1PA7 LINE L1 12 6154 0 351 297 27 0 chr6 12448519 12448630 -169966612 + L2 LINE L2 3198 3311 -2 1928 140 68 3 chr6 12450154 12450490 -169964752 - MER46B DNA MER2_type 0 236 4 2579 116 6 3 chr6 12452095 12452458 -169962784 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr6 12452606 12452627 -169962615 + AT_rich Low_complexity Low_complexity 1 21 0 510 312 48 48 chr6 12453162 12453351 -169961891 + MIR3 SINE MIR 20 208 0 439 362 99 18 chr6 12453968 12454302 -169960940 + L2 LINE L2 2397 2757 -557 241 307 80 0 chr6 12454919 12455007 -169960235 + L2 LINE L2 3214 3308 -5 192 404 10 0 chr6 12455352 12455451 -169959791 + L3 LINE CR1 363 462 -1115 735 329 176 29 chr6 12455505 12456234 -169959008 + L3 LINE CR1 557 1392 -185 900 244 91 81 chr6 12456365 12456882 -169958360 + MLT1H LTR MaLR 13 534 -15 402 188 0 0 chr6 12458437 12458538 -169956704 + (TA)n Simple_repeat Simple_repeat 2 102 0 976 164 123 0 chr6 12459486 12459681 -169955561 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr6 12460232 12460273 -169954969 + (TG)n Simple_repeat Simple_repeat 1 41 0 249 238 155 0 chr6 12460687 12460771 -169954471 + MIR SINE MIR 85 181 -81 512 282 19 30 chr6 12460857 12461119 -169954123 + HAL1 LINE L1 1404 1662 -845 307 250 19 70 chr6 12461450 12461606 -169953636 + HAL1b LINE L1 764 911 -437 254 256 51 29 chr6 12461674 12461811 -169953431 + L1M4 LINE L1 4123 4262 -1884 309 344 43 5 chr6 12461917 12462103 -169953139 + L1M4 LINE L1 4418 4610 -1536 230 250 45 23 chr6 12462154 12462242 -169953000 + L1M4 LINE L1 4735 4824 -1322 1101 296 51 35 chr6 12462599 12463255 -169951987 + L1MC4a LINE L1 5199 5403 -743 3135 151 20 10 chr6 12463417 12464006 -169951236 + L1MB4 LINE L1 5586 6180 0 424 272 179 46 chr6 12464660 12464984 -169950258 - L3 LINE CR1 -107 1470 1104 1390 231 73 46 chr6 12465119 12465659 -169949583 + MLT1F1 LTR MaLR 1 564 -3 1909 149 0 0 chr6 12465798 12466066 -169949176 + AluSx SINE Alu 29 296 -16 2318 104 0 13 chr6 12466789 12467105 -169948137 + AluSx SINE Alu 1 312 0 889 189 0 6 chr6 12467729 12467893 -169947349 + FRAM SINE Alu 2 164 -2 22 0 0 0 chr6 12468151 12468173 -169947069 + AT_rich Low_complexity Low_complexity 1 22 0 4562 166 30 9 chr6 12468331 12469291 -169945951 - L1MB2 LINE L1 -40 6131 5158 301 169 0 0 chr6 12469288 12469347 -169945895 + L1MB2 LINE L1 5088 5146 -1000 * 5285 40 0 9 chr6 12469571 12470216 -169945026 + L1PA5 LINE L1 5516 6154 0 557 175 53 0 chr6 12470660 12470774 -169944468 - Zaphod DNA AcHobo 0 4031 3912 1342 251 9 0 chr6 12470775 12471094 -169944148 - MER82 DNA MER2_type 0 653 332 * 3357 127 5 2 chr6 12471093 12471602 -169943640 + MER1A DNA MER1_type 17 529 0 1144 214 109 3 chr6 12471609 12471903 -169943339 - MER82 DNA MER2_type -328 325 1 1122 187 32 54 chr6 12471903 12472217 -169943025 - Zaphod DNA AcHobo -119 3912 3606 2138 225 64 58 chr6 12472230 12472791 -169942451 - Zaphod DNA AcHobo -3045 986 417 2176 117 0 0 chr6 12472791 12473081 -169942161 + AluSx SINE Alu 1 290 -22 2138 225 64 58 chr6 12473081 12473373 -169941869 - Zaphod DNA AcHobo -3614 417 128 602 223 205 5 chr6 12473918 12474133 -169941109 - MIR SINE MIR 0 262 5 2451 63 0 13 chr6 12474354 12474656 -169940586 - AluY SINE Alu -13 298 1 248 236 45 34 chr6 12474803 12474892 -169940350 - MIR SINE MIR -138 124 35 2269 111 22 33 chr6 12476501 12476869 -169938373 - THE1B LTR MaLR 0 364 1 570 128 0 0 chr6 12476923 12477017 -169938225 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 21 57 0 0 chr6 12477133 12477168 -169938074 + AT_rich Low_complexity Low_complexity 1 35 0 229 164 27 0 chr6 12477711 12477784 -169937458 + (TA)n Simple_repeat Simple_repeat 2 76 0 23 101 0 0 chr6 12478166 12478245 -169936997 + AT_rich Low_complexity Low_complexity 1 79 0 589 222 112 50 chr6 12478520 12478858 -169936384 - HAL1 LINE L1 -163 2344 1986 443 269 36 36 chr6 12478883 12479050 -169936192 - L2 LINE L2 -1 3312 3146 502 194 0 0 chr6 12479279 12479377 -169935865 + FLAM_C SINE Alu 45 142 -1 207 296 16 64 chr6 12479392 12479517 -169935725 - L2 LINE L2 -338 2975 2857 809 140 0 28 chr6 12481284 12481462 -169933780 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 930 248 36 0 chr6 12482806 12483084 -169932158 - L1ME3A LINE L1 -5 6165 5878 258 32 0 0 chr6 12484324 12484355 -169930887 + (TG)n Simple_repeat Simple_repeat 1 31 0 364 341 34 11 chr6 12484980 12485152 -169930090 - L2 LINE L2 -564 2750 2572 2381 101 22 27 chr6 12485152 12485518 -169929724 - THE1B LTR MaLR 0 364 1 607 168 0 132 chr6 12485574 12485764 -169929478 - MER3 DNA MER1_type -3 206 42 696 274 39 55 chr6 12486153 12486460 -169928782 - LTR16B LTR ERVL 0 464 163 1801 141 25 91 chr6 12486466 12486693 -169928549 + THE1C LTR MaLR 5 196 -179 12597 51 0 0 chr6 12486693 12489051 -169926191 + L1PA6 LINE L1 3793 6153 -1 1801 141 25 91 chr6 12489051 12489220 -169926022 + THE1C LTR MaLR 196 375 0 411 270 22 7 chr6 12489231 12489368 -169925874 - LTR16B LTR ERVL -323 141 3 28 91 0 0 chr6 12489413 12489490 -169925752 + AT_rich Low_complexity Low_complexity 1 77 0 9779 213 57 23 chr6 12489606 12492643 -169922599 + L1MDa LINE L1 14 3171 -3369 2454 220 20 2 chr6 12492643 12493153 -169922089 + LTR53 LTR ERVL 1 519 0 9779 213 57 23 chr6 12493153 12493313 -169921929 + L1MDa LINE L1 3171 3324 -3216 2380 100 0 0 chr6 12493431 12493740 -169921502 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 12494252 12494281 -169920961 + AT_rich Low_complexity Low_complexity 1 29 0 269 281 25 0 chr6 12494487 12494608 -169920634 + (TA)n Simple_repeat Simple_repeat 1 124 0 411 262 140 26 chr6 12495434 12495663 -169919579 + L1ME4a LINE L1 5852 6106 -15 480 283 68 11 chr6 12496092 12496272 -169918970 + MIR SINE MIR 7 189 -68 426 310 134 9 chr6 12496414 12496646 -169918596 - MLT1L LTR MaLR -6 609 349 2882 200 19 23 chr6 12496793 12497442 -169917800 - L1MB8 LINE L1 0 6178 5533 823 163 20 48 chr6 12497449 12497700 -169917542 - L1M4c LINE L1 -3425 3532 3182 370 197 40 0 chr6 12497701 12497777 -169917465 + Tigger5 DNA MER2_type 1 79 -2244 336 231 0 0 chr6 12497780 12497845 -169917397 - Tigger5 DNA MER2_type -7 2316 2252 400 169 0 0 chr6 12497849 12497914 -169917328 + Tigger5 DNA MER2_type 2259 2323 0 707 231 79 43 chr6 12497914 12498446 -169916796 - L1M4c LINE L1 -3775 3182 2631 3585 227 87 18 chr6 12498463 12499484 -169915758 - L1M4c LINE L1 -5187 1672 581 10328 200 48 27 chr6 12499487 12500452 -169914790 - L1MC1 LINE L1 -192 6421 5478 2418 50 7 10 chr6 12500452 12500755 -169914487 - AluY SINE Alu -9 302 1 10328 200 48 27 chr6 12500755 12504191 -169911051 - L1MC1 LINE L1 -1135 5478 2116 2098 80 11 7 chr6 12504191 12504467 -169910775 - AluSc SINE Alu -2 307 31 10328 200 48 27 chr6 12504467 12504595 -169910647 - L1MC1 LINE L1 -4497 2116 1992 373 147 0 0 chr6 12504595 12504663 -169910579 - L1PB4 LINE L1 -3 6153 6086 10328 200 48 27 chr6 12504663 12506394 -169908848 - L1MC1 LINE L1 -4621 1992 27 1197 295 45 65 chr6 12506406 12507783 -169907459 - L1MEc LINE L1 -4796 1600 251 462 305 40 11 chr6 12507803 12507977 -169907265 - MLT1J LTR MaLR -326 185 7 2777 7 0 0 chr6 12508247 12508547 -169906695 + AluYa5 SINE Alu 1 300 -11 1417 241 21 48 chr6 12508747 12509221 -169906021 + L1ME2 LINE L1 5676 6136 -28 332 311 66 20 chr6 12509279 12509475 -169905767 + L1MC4 LINE L1 7836 8040 -2 6261 94 5 0 chr6 12509792 12510748 -169904494 - L1PA14 LINE L1 0 6161 5213 878 190 22 0 chr6 12510748 12510927 -169904315 - L1PA14 LINE L1 -1516 4630 4448 5760 39 3 0 chr6 12511718 12512415 -169902827 - L1PA5 LINE L1 0 6154 5456 407 271 107 77 chr6 12513550 12514029 -169901213 + MLT1K LTR MaLR 66 558 -30 755 160 0 0 chr6 12514361 12514480 -169900762 - AluJb SINE Alu 0 312 194 436 320 23 6 chr6 12514577 12514752 -169900490 + MER5A DNA MER1_type 6 183 -6 339 330 125 0 chr6 12515029 12515141 -169900101 + MER5B DNA MER1_type 1 126 -52 2063 135 47 84 chr6 12515489 12515730 -169899512 - Tigger2a DNA MER2_type -2274 434 216 1746 156 30 0 chr6 12515730 12515999 -169899243 + AluSx SINE Alu 6 282 -30 2063 135 47 84 chr6 12515999 12516208 -169899034 - Tigger2a DNA MER2_type -2492 216 1 2083 159 17 0 chr6 12516214 12516573 -169898669 + MER47A DNA MER2_type 1 365 -1 369 243 122 56 chr6 12517182 12517396 -169897846 + L1ME LINE L1 5521 5748 -373 2039 121 47 9 chr6 12517419 12517741 -169897501 + MER1B DNA MER1_type 1 334 -5 251 200 57 0 chr6 12517961 12518031 -169897211 + HAL1b LINE L1 1257 1330 -18 1330 173 46 0 chr6 12519068 12519305 -169895937 + Tigger7 DNA MER2_type 9 256 -2231 419 102 0 0 chr6 12519305 12519364 -169895878 - MER1B DNA MER1_type 0 329 271 * 1106 107 12 6 chr6 12519363 12519531 -169895711 - MER1B DNA MER1_type -126 171 3 479 184 11 0 chr6 12519550 12519637 -169895605 + Tigger7 DNA MER2_type 2396 2483 -8 28 48 0 0 chr6 12519759 12519801 -169895441 + AT_rich Low_complexity Low_complexity 1 42 0 297 276 72 46 chr6 12519888 12520040 -169895202 + L2 LINE L2 3152 3307 -6 2184 124 0 0 chr6 12520514 12520813 -169894429 - AluSg SINE Alu -11 299 1 356 171 219 38 chr6 12520972 12521077 -169894165 - L2 LINE L2 0 3313 3190 1924 142 6 31 chr6 12521275 12521592 -169893650 - AluJb SINE Alu -3 309 1 527 225 8 0 chr6 12521943 12522072 -169893170 - LTR16C LTR ERVL 0 491 362 568 292 120 25 chr6 12522228 12522469 -169892773 + MLT1H1 LTR MaLR 32 249 -306 2282 108 0 19 chr6 12522469 12522784 -169892458 + AluSp SINE Alu 1 309 -4 568 292 120 25 chr6 12522784 12522974 -169892268 + MLT1H1 LTR MaLR 249 504 -51 475 290 27 22 chr6 12523022 12523205 -169892037 - LTR16C LTR ERVL -266 225 42 309 51 0 0 chr6 12523474 12523513 -169891729 + (TG)n Simple_repeat Simple_repeat 2 40 0 1617 102 90 71 chr6 12524405 12524759 -169890483 + MER46B DNA MER2_type 1 236 0 347 316 0 0 chr6 12525097 12525195 -169890047 + MIR SINE MIR 81 178 -84 962 181 0 12 chr6 12525365 12525536 -169889706 - FRAM SINE Alu -8 168 1 195 253 274 68 chr6 12526356 12526502 -169888740 + MIR3 SINE MIR 33 208 0 285 156 0 0 chr6 12526546 12526591 -169888651 - MER69 DNA AcHobo -4 2522 2478 606 200 38 27 chr6 12526594 12526779 -169888463 - MER53 DNA DNA 0 189 3 293 216 11 0 chr6 12526797 12526885 -169888357 - MER69 DNA AcHobo -58 2468 2380 222 37 0 0 chr6 12528189 12528216 -169887026 + (TG)n Simple_repeat Simple_repeat 1 27 0 486 330 47 10 chr6 12529346 12529643 -169885599 + L1ME3A LINE L1 5524 5831 -339 2241 99 0 13 chr6 12529806 12530109 -169885133 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr6 12530117 12530138 -169885104 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 12530210 12530241 -169885001 + AT_rich Low_complexity Low_complexity 1 31 0 188 35 35 0 chr6 12530290 12530319 -169884923 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 479 292 97 35 chr6 12530322 12530661 -169884581 + Tigger8 DNA MER2_type 276 635 -31 2206 110 7 3 chr6 12531258 12531557 -169883685 + AluSx SINE Alu 3 302 -10 188 23 47 47 chr6 12531566 12531609 -169883633 + (GAGAA)n Simple_repeat Simple_repeat 3 45 0 823 124 31 0 chr6 12531618 12531747 -169883495 + AluSg/x SINE Alu 176 308 -4 678 159 23 23 chr6 12531767 12531943 -169883299 + GA-rich Low_complexity Low_complexity 3 178 0 458 75 0 0 chr6 12533603 12533670 -169881572 + AluY SINE Alu 193 259 -52 297 0 0 0 chr6 12533937 12533970 -169881272 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 1285 156 135 8 chr6 12533975 12534112 -169881130 - AluJo SINE Alu -33 279 161 204 40 0 0 chr6 12534112 12534137 -169881105 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1285 156 135 8 chr6 12534137 12534243 -169880999 - AluJo SINE Alu -151 161 5 261 57 0 0 chr6 12534463 12534498 -169880744 + (CA)n Simple_repeat Simple_repeat 2 36 0 285 75 0 0 chr6 12534498 12534538 -169880704 + (GA)n Simple_repeat Simple_repeat 1 40 0 2202 102 10 0 chr6 12534932 12535227 -169880015 + AluSx SINE Alu 1 298 -14 1324 152 26 134 chr6 12535398 12535794 -169879448 + Charlie1b DNA MER1_type 1 321 -2440 2085 135 23 0 chr6 12535794 12536098 -169879144 + AluSx SINE Alu 1 311 -1 1324 152 26 134 chr6 12536098 12536282 -169878960 + Charlie1b DNA MER1_type 321 523 0 217 315 25 56 chr6 12536694 12536856 -169878386 - MER5A DNA MER1_type -22 167 11 667 78 78 37 chr6 12537267 12537486 -169877756 - L1MA1 LINE L1 0 6302 6019 6881 125 130 58 chr6 12537871 12539452 -169875790 + pTR5 LTR ERV1 743 2438 0 2230 125 0 0 chr6 12540725 12541030 -169874212 + AluSx SINE Alu 1 305 -7 23 78 0 0 chr6 12541099 12541150 -169874092 + AT_rich Low_complexity Low_complexity 1 51 0 678 167 0 0 chr6 12541700 12541832 -169873410 + (CCCTA)n Simple_repeat Simple_repeat 2 133 0 1898 102 0 0 chr6 12541856 12542101 -169873141 - AluSg SINE Alu -26 284 40 276 318 39 16 chr6 12542665 12542794 -169872448 + MIR SINE MIR 85 216 -46 246 32 0 0 chr6 12543987 12544018 -169871224 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr6 12544054 12544078 -169871164 + (A)n Simple_repeat Simple_repeat 1 24 0 439 82 0 0 chr6 12544112 12544173 -169871069 + Alu SINE Alu 1 61 -257 1540 87 10 0 chr6 12544173 12544369 -169870873 + AluSg/x SINE Alu 98 295 -17 488 312 49 40 chr6 12544862 12545189 -169870053 + MLT1I LTR MaLR 72 401 -8 688 309 23 9 chr6 12545287 12545507 -169869735 - MER58A DNA MER1_type 0 224 2 2172 109 0 3 chr6 12545541 12545834 -169869408 + AluSq SINE Alu 1 292 -21 270 180 66 16 chr6 12545860 12545921 -169869321 - MLT1C LTR MaLR -5 462 399 284 101 47 39 chr6 12545927 12546056 -169869186 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 1147 210 96 18 chr6 12546089 12546423 -169868819 - MLT1C LTR MaLR -63 404 45 1494 164 7 7 chr6 12546545 12546819 -169868423 - L1PB3 LINE L1 0 6154 5881 2206 101 10 3 chr6 12547913 12548209 -169867033 + AluSq SINE Alu 1 298 -15 314 280 23 30 chr6 12548225 12548357 -169866885 - MLT1I LTR MaLR -33 376 246 282 189 11 105 chr6 12548429 12548524 -169866718 - MLT1J LTR MaLR -325 186 101 21 57 0 0 chr6 12549590 12549625 -169865617 + AT_rich Low_complexity Low_complexity 1 35 0 260 319 71 31 chr6 12549731 12549967 -169865275 - L1ME LINE L1 -224 5897 5641 1972 142 3 31 chr6 12549967 12550284 -169864958 + AluJo SINE Alu 1 308 -4 260 319 71 31 chr6 12550284 12550387 -169864855 - L1ME LINE L1 -480 5641 5544 27 49 0 0 chr6 12550533 12550574 -169864668 + AT_rich Low_complexity Low_complexity 1 41 0 570 284 125 6 chr6 12550722 12551050 -169864192 - L1ME4a LINE L1 -193 5928 5562 32 26 0 0 chr6 12551134 12551173 -169864069 + AT_rich Low_complexity Low_complexity 1 39 0 278 262 119 57 chr6 12551341 12551585 -169863657 - HAL1b LINE L1 -684 664 406 746 276 68 44 chr6 12551592 12551976 -169863266 + MLT2B2 LTR ERVL 1 393 -122 336 24 0 0 chr6 12552003 12552044 -169863198 + (CA)n Simple_repeat Simple_repeat 2 42 0 1436 157 5 129 chr6 12552499 12552893 -169862349 + MER7A DNA MER2_type 4 346 0 2973 133 4 24 chr6 12553024 12553567 -169861675 + L1MA9 LINE L1 5781 6312 0 295 211 84 0 chr6 12553913 12553984 -169861258 - L2 LINE L2 -1 3312 3236 1911 179 19 16 chr6 12554660 12555024 -169860218 + MLT1A1 LTR MaLR 1 365 0 1392 225 17 28 chr6 12555921 12556281 -169858961 - MLT1A2 LTR MaLR 0 374 19 223 28 56 0 chr6 12557074 12557110 -169858132 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 2124 101 0 14 chr6 12557890 12558187 -169857055 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr6 12559108 12559138 -169856104 + AT_rich Low_complexity Low_complexity 1 30 0 235 368 0 0 chr6 12559185 12559253 -169855989 + MIR3 SINE MIR 104 171 -37 842 206 20 9 chr6 12559280 12559548 -169855694 + L1MC4a LINE L1 6422 6616 -1192 312 275 0 22 chr6 12559549 12559640 -169855602 + L1MC4 LINE L1 6615 6703 -1339 237 250 0 0 chr6 12559640 12559700 -169855542 + (TA)n Simple_repeat Simple_repeat 2 61 0 3734 241 72 12 chr6 12559716 12560845 -169854397 + L1MC4a LINE L1 6605 7800 -8 212 301 0 55 chr6 12560900 12560973 -169854269 - L2 LINE L2 -3 3310 3242 432 0 0 0 chr6 12560977 12561025 -169854217 + (CA)n Simple_repeat Simple_repeat 2 49 0 529 305 126 40 chr6 12561141 12561515 -169853727 + L1MC4a LINE L1 4547 4952 -1194 4299 133 10 10 chr6 12561675 12562377 -169852865 - L1PA16 LINE L1 0 6166 5465 22 56 0 0 chr6 12562572 12562608 -169852634 + AT_rich Low_complexity Low_complexity 1 36 0 282 225 152 7 chr6 12562608 12562746 -169852496 + L1MC4a LINE L1 5312 5469 -2339 631 265 45 36 chr6 12562821 12563130 -169852112 + L1MC4a LINE L1 5600 5911 -1897 334 312 128 7 chr6 12563977 12564259 -169850983 + L2 LINE L2 2422 2737 -577 655 282 129 58 chr6 12564307 12564740 -169850502 + L2 LINE L2 2849 3312 -1 877 296 97 42 chr6 12565189 12565510 -169849732 + L2 LINE L2 2570 2872 -441 2408 172 48 26 chr6 12565510 12566057 -169849185 + MER89 LTR ERV1 1 559 0 877 296 97 42 chr6 12566057 12566435 -169848807 + L2 LINE L2 2872 3311 -2 1748 201 10 48 chr6 12566907 12567223 -169848019 - MLT2C1 LTR ERVL 0 397 99 2168 95 0 24 chr6 12567223 12567517 -169847725 + AluSq SINE Alu 1 287 -26 1748 201 10 48 chr6 12567517 12567613 -169847629 - MLT2C1 LTR ERVL -298 99 1 338 280 139 16 chr6 12567640 12567962 -169847280 + L2 LINE L2 2695 3044 -269 360 127 16 0 chr6 12568084 12568147 -169847095 + MER20 DNA MER1_type 3 66 -153 2341 169 7 18 chr6 12568178 12568633 -169846609 - L1MC1 LINE L1 -3 6330 5881 2648 169 88 2 chr6 12568633 12568827 -169846415 + MLT2B3 LTR ERVL 2 178 -376 219 36 0 0 chr6 12568827 12568855 -169846387 + (TC)n Simple_repeat Simple_repeat 1 28 0 2648 169 88 2 chr6 12568855 12569151 -169846091 + MLT2B3 LTR ERVL 178 534 -20 249 176 14 54 chr6 12569151 12569225 -169846017 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 584 84 11 73 chr6 12569227 12569405 -169845837 + (TCTA)n Simple_repeat Simple_repeat 3 169 0 1367 138 32 0 chr6 12569460 12569706 -169845536 - L1MC1 LINE L1 -447 5886 5633 721 147 66 0 chr6 12569706 12569842 -169845400 + MSTB LTR MaLR 1 145 -281 774 250 246 13 chr6 12569842 12569995 -169845247 - L2 LINE L2 -1283 2031 1915 1532 188 140 11 chr6 12569995 12570346 -169844896 - MSTD LTR MaLR 0 396 1 774 250 246 13 chr6 12570346 12570640 -169844602 - L2 LINE L2 -1399 1915 1480 1327 260 104 16 chr6 12571367 12571911 -169843331 + MLT1E2 LTR MaLR 6 602 -52 318 46 82 8 chr6 12571939 12571995 -169843247 - MLT2A2 LTR ERVL 0 453 402 291 245 31 51 chr6 12572051 12572149 -169843093 + MLT1E1 LTR MaLR 207 302 -352 204 0 0 77 chr6 12572163 12572202 -169843040 + (TA)n Simple_repeat Simple_repeat 2 37 0 1176 95 0 6 chr6 12572202 12572370 -169842872 - MLT2A1 LTR ERVL -58 386 220 2267 108 3 7 chr6 12572669 12572974 -169842268 - AluSq SINE Alu -9 304 1 348 307 64 36 chr6 12573646 12573786 -169841456 - MIR SINE MIR -72 190 47 181 315 19 0 chr6 12573882 12573936 -169841306 - L2 LINE L2 -8 3264 3210 248 373 0 0 chr6 12574064 12574131 -169841111 - L2 LINE L2 -21 3251 3185 2478 67 0 3 chr6 12574725 12575024 -169840218 + AluSp SINE Alu 5 302 -11 2156 114 0 0 chr6 12575604 12575884 -169839358 - AluSx SINE Alu -32 280 1 186 43 0 0 chr6 12576035 12576058 -169839184 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 919 177 86 3 chr6 12576059 12576249 -169838993 - MER21B LTR ERV1 -355 576 313 1826 151 18 0 chr6 12576546 12576848 -169838394 - AluSx SINE Alu 0 307 1 1427 162 41 4 chr6 12576879 12577150 -169838092 - L1MB2 LINE L1 -3 6168 5888 777 291 13 4 chr6 12577265 12577492 -169837750 - MIR SINE MIR -32 230 2 230 257 50 86 chr6 12580017 12580157 -169835085 - L2 LINE L2 -832 2482 2348 2123 137 0 16 chr6 12580291 12580606 -169834636 + AluSx SINE Alu 1 310 -2 225 65 0 0 chr6 12581240 12581271 -169833971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2224 132 0 3 chr6 12582549 12582852 -169832390 - AluSx SINE Alu -10 302 1 219 146 0 0 chr6 12583290 12583331 -169831911 + (TG)n Simple_repeat Simple_repeat 2 42 0 954 293 97 0 chr6 12583473 12583804 -169831438 + MER69 DNA AcHobo 26 388 -2138 403 186 8 108 chr6 12583841 12583970 -169831272 + MER69 DNA AcHobo 579 694 -532 2303 233 89 12 chr6 12584000 12584808 -169830434 + MER69 DNA AcHobo 1656 2525 -1 1546 202 50 3 chr6 12584878 12585175 -169830067 + AluJo SINE Alu 1 311 -1 472 317 130 25 chr6 12585176 12585608 -169829634 - L1 LINE L1 -1137 5009 4533 253 189 140 35 chr6 12586206 12586349 -169828893 - L1 LINE L1 -2400 3746 3589 2539 220 73 24 chr6 12586591 12587522 -169827720 - Charlie7 DNA MER1_type -32 2580 1604 1849 245 84 24 chr6 12587603 12588451 -169826791 - Charlie2a DNA MER1_type -46 2816 1918 381 269 39 32 chr6 12589003 12589159 -169826083 + L1ME3A LINE L1 6005 6161 -9 2896 227 92 70 chr6 12589162 12590668 -169824574 - Charlie2a DNA MER1_type -1106 1756 218 1356 105 0 0 chr6 12591126 12591307 -169823935 - AluSg/x SINE Alu -2 310 130 21 0 0 0 chr6 12591315 12591336 -169823906 + AT_rich Low_complexity Low_complexity 1 21 0 358 277 84 60 chr6 12591641 12591756 -169823486 - L1 LINE L1 -2794 3352 3241 2375 87 3 0 chr6 12591756 12592056 -169823186 - AluSc SINE Alu -8 301 1 358 277 84 60 chr6 12592056 12592225 -169823017 - L1 LINE L1 -2905 3241 3061 930 106 75 58 chr6 12592252 12592478 -169822764 - L1MA7 LINE L1 -9 6282 6053 1291 131 0 0 chr6 12592488 12592687 -169822555 - MER41A LTR ERV1 -88 466 268 358 148 0 0 chr6 12592687 12592748 -169822494 - L1MA9 LINE L1 -244 6068 6008 1268 221 74 14 chr6 12594356 12594723 -169820519 - L1MB7 LINE L1 0 6184 5796 189 0 0 0 chr6 12595005 12595026 -169820216 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2178 109 0 0 chr6 12595041 12595324 -169819918 - AluSq SINE Alu -30 283 1 313 304 52 0 chr6 12595437 12595552 -169819690 + MIR3 SINE MIR 75 195 -13 22 35 0 0 chr6 12595898 12595927 -169819315 + AT_rich Low_complexity Low_complexity 1 29 0 695 180 7 50 chr6 12596268 12596407 -169818835 - FLAM_A SINE Alu 0 133 1 1593 186 10 20 chr6 12596513 12596809 -169818433 + AluJo SINE Alu 1 293 -19 26 64 0 0 chr6 12596816 12596863 -169818379 + AT_rich Low_complexity Low_complexity 1 47 0 21 71 0 0 chr6 12597581 12597623 -169817619 + AT_rich Low_complexity Low_complexity 1 42 0 2727 264 116 56 chr6 12597803 12598513 -169816729 + HAL1 LINE L1 10 676 -1831 2073 124 10 0 chr6 12598513 12598804 -169816438 - AluSx SINE Alu -18 294 1 2727 264 116 56 chr6 12598804 12599378 -169815864 + HAL1 LINE L1 676 1214 -1293 1459 106 0 49 chr6 12599378 12599604 -169815638 + AluY SINE Alu 40 254 -57 2727 264 116 56 chr6 12599604 12600166 -169815076 + HAL1 LINE L1 1214 1967 -540 4136 113 41 23 chr6 12600192 12600457 -169814785 - Tigger3(Golem) DNA MER2_type 0 3029 2770 2333 72 0 31 chr6 12600457 12600776 -169814466 - AluSg SINE Alu -1 309 1 4136 113 41 23 chr6 12600776 12601242 -169814000 - Tigger3(Golem) DNA MER2_type -259 2770 2285 624 204 0 0 chr6 12601242 12601350 -169813892 - Tigger3(Golem) DNA MER2_type -2921 108 1 876 284 73 57 chr6 12601350 12601843 -169813399 + HAL1 LINE L1 2007 2507 0 441 272 61 0 chr6 12602355 12602469 -169812773 + L2 LINE L2 3193 3313 0 221 267 58 67 chr6 12602759 12602879 -169812363 + MIR SINE MIR 32 150 -112 189 286 71 0 chr6 12603359 12603429 -169811813 - MIR3 SINE MIR -27 181 107 1972 131 34 7 chr6 12603747 12604045 -169811197 - AluJb SINE Alu -6 306 1 264 125 62 0 chr6 12605355 12605403 -169809839 - MIR SINE MIR -91 171 121 270 81 0 0 chr6 12606586 12606623 -169808619 + (CA)n Simple_repeat Simple_repeat 2 38 0 375 192 8 17 chr6 12607506 12607626 -169807616 + (TA)n Simple_repeat Simple_repeat 1 119 0 1034 118 82 165 chr6 12607652 12607755 -169807487 - MER44D DNA MER2_type -1908 583 473 2182 96 48 0 chr6 12607755 12608046 -169807196 - AluSx SINE Alu -7 305 1 1034 118 82 165 chr6 12608046 12608257 -169806985 - MER44D DNA MER2_type -2018 473 25 1292 179 26 15 chr6 12608660 12608933 -169806309 - L1MD3 LINE L1 0 7995 7720 737 299 61 0 chr6 12609052 12609266 -169805976 - MIR SINE MIR -28 234 8 1954 156 3 7 chr6 12609534 12609842 -169805400 - AluJb SINE Alu -4 308 2 198 167 0 0 chr6 12609876 12609912 -169805330 + CT-rich Low_complexity Low_complexity 1 36 0 218 311 131 16 chr6 12610078 12610200 -169805042 + MIR3 SINE MIR 15 150 -58 488 239 128 51 chr6 12610347 12610581 -169804661 - L2 LINE L2 -3 3310 3059 1328 177 39 84 chr6 12610918 12611252 -169803990 + MLT1B LTR MaLR 1 319 -71 376 314 238 0 chr6 12611810 12611982 -169803260 + MIR SINE MIR 48 260 -2 250 194 32 118 chr6 12612243 12612283 -169802959 - MER94 DNA DNA -25 109 67 2370 65 3 0 chr6 12612283 12612573 -169802669 - AluY SINE Alu -20 291 1 250 194 32 118 chr6 12612573 12612625 -169802617 - MER94 DNA DNA -67 67 25 206 210 43 43 chr6 12614197 12614335 -169800907 + (CCGGG)n Simple_repeat Simple_repeat 5 142 0 195 100 0 0 chr6 12616319 12616349 -169798893 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr6 12616531 12616559 -169798683 + GC_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr6 12616840 12616867 -169798375 + (TG)n Simple_repeat Simple_repeat 1 27 0 646 220 115 11 chr6 12618201 12618392 -169796850 - MIR SINE MIR -18 244 34 308 258 205 0 chr6 12618497 12618648 -169796594 + MIR SINE MIR 71 252 -10 675 264 135 45 chr6 12618926 12619259 -169795983 - MLT1I LTR MaLR 0 409 47 301 253 13 13 chr6 12619954 12620029 -169795213 + L2 LINE L2 3239 3313 0 228 246 72 0 chr6 12621137 12621206 -169794036 + L2 LINE L2 3240 3313 0 3672 118 128 94 chr6 12621369 12622604 -169792638 - pTR5 LTR ERV1 -133 2038 6 2236 94 26 10 chr6 12625041 12625348 -169789894 - AluSx SINE Alu 0 312 1 2218 102 3 0 chr6 12625834 12626127 -169789115 - AluSq SINE Alu -19 294 1 2253 102 0 3 chr6 12626339 12626632 -169788610 - AluSg SINE Alu -18 292 1 290 294 199 0 chr6 12626692 12626828 -169788414 + MIR SINE MIR 83 245 -17 24 32 0 0 chr6 12628411 12628442 -169786800 + AT_rich Low_complexity Low_complexity 1 31 0 346 173 77 77 chr6 12629008 12629112 -169786130 - MIR3 SINE MIR -7 201 98 682 194 56 0 chr6 12629160 12629304 -169785938 - MIR SINE MIR -34 228 77 2179 127 0 0 chr6 12629920 12630220 -169785022 + AluSq SINE Alu 1 300 -13 996 217 98 0 chr6 12631120 12631323 -169783919 + MER58A DNA MER1_type 2 224 0 1699 245 47 14 chr6 12632854 12633339 -169781903 - L1MB8 LINE L1 0 6178 5678 2535 237 115 36 chr6 12633380 12635175 -169780067 - L1M4 LINE L1 -3783 3174 1206 317 302 77 30 chr6 12635783 12636018 -169779224 - L1M4 LINE L1 -6296 559 314 2454 60 7 13 chr6 12636302 12636604 -169778638 - AluY SINE Alu -11 300 1 507 244 138 41 chr6 12636634 12636873 -169778369 + MIR SINE MIR 1 256 -6 265 130 0 43 chr6 12637183 12637229 -169778013 + Tigger5 DNA MER2_type 2 45 -2278 * 1667 124 35 4 chr6 12637227 12637485 -169777757 + Tigger5 DNA MER2_type 2054 2319 -4 243 0 0 0 chr6 12637485 12637512 -169777730 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr6 12637906 12637934 -169777308 + AT_rich Low_complexity Low_complexity 1 28 0 337 262 129 29 chr6 12640313 12640523 -169774719 + L1ME4a LINE L1 5637 5867 -254 2100 108 13 25 chr6 12640784 12641099 -169774143 + AluSx SINE Alu 1 311 -1 197 356 0 0 chr6 12641101 12641160 -169774082 - L2 LINE L2 -228 3044 2986 1310 202 19 54 chr6 12641860 12642177 -169773065 - AluJo SINE Alu -6 306 1 764 222 80 9 chr6 12642322 12642547 -169772695 + Charlie4a DNA MER1_type 264 504 -4 2200 86 0 4 chr6 12642558 12642921 -169772321 + AluSc SINE Alu 5 366 0 269 299 147 11 chr6 12642996 12643173 -169772069 + MIR SINE MIR 53 253 -9 2289 131 118 5 chr6 12644830 12645211 -169770031 - MSTA LTR MaLR 0 428 5 2531 55 0 10 chr6 12645300 12645607 -169769635 + AluY SINE Alu 1 304 -7 1992 132 14 0 chr6 12645825 12646121 -169769121 - AluY SINE Alu -11 300 1 2718 23 0 7 chr6 12646235 12646543 -169768699 - AluYb8 SINE Alu -12 306 1 725 93 0 10 chr6 12646545 12646642 -169768600 - AluJb SINE Alu -14 298 203 27 0 0 0 chr6 12646683 12646710 -169768532 + AT_rich Low_complexity Low_complexity 1 27 0 346 279 91 19 chr6 12646889 12647043 -169768199 + MER104 DNA Tc2 4 168 -12 288 305 47 15 chr6 12647054 12647201 -169768041 - L1P LINE L1 -1123 5023 4872 2326 103 0 16 chr6 12647518 12647829 -169767413 - AluSx SINE Alu -6 306 1 250 262 71 24 chr6 12647989 12648073 -169767169 - MER20B DNA MER1_type -626 157 70 220 146 0 49 chr6 12649682 12649723 -169765519 - MER91B DNA MER1_type -127 63 25 350 275 76 57 chr6 12650444 12650655 -169764587 - MIR SINE MIR -1 261 47 2388 84 0 7 chr6 12650661 12650957 -169764285 + AluSc SINE Alu 1 294 -15 279 0 0 0 chr6 12651008 12651039 -169764203 + (TG)n Simple_repeat Simple_repeat 2 32 0 2231 92 0 0 chr6 12651039 12651321 -169763921 - AluSg SINE Alu -28 282 1 21 0 0 0 chr6 12652660 12652681 -169762561 + AT_rich Low_complexity Low_complexity 1 21 0 2513 56 0 3 chr6 12654466 12654769 -169760473 + AluY SINE Alu 1 302 -9 368 262 57 8 chr6 12655037 12655159 -169760083 - L1MC4 LINE L1 -1236 6806 6679 303 28 0 0 chr6 12655164 12655200 -169760042 + (TA)n Simple_repeat Simple_repeat 2 37 0 320 338 81 25 chr6 12655432 12655630 -169759612 - L1MC4a LINE L1 -1536 6272 6064 27 29 0 0 chr6 12655750 12655784 -169759458 + AT_rich Low_complexity Low_complexity 1 34 0 357 363 93 10 chr6 12656674 12656878 -169758364 - MIR SINE MIR -1 261 41 22 0 0 0 chr6 12657350 12657372 -169757870 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr6 12657388 12657415 -169757827 + (TG)n Simple_repeat Simple_repeat 2 28 0 338 265 99 20 chr6 12658462 12658613 -169756629 - L1ME4a LINE L1 -24 6097 5935 423 251 60 27 chr6 12658645 12658828 -169756414 - L1ME4a LINE L1 -158 5963 5775 259 338 13 0 chr6 12659145 12659222 -169756020 - L2 LINE L2 -53 3219 3142 2238 88 3 0 chr6 12659364 12659649 -169755593 + AluSc SINE Alu 10 295 -14 238 225 100 50 chr6 12660487 12660607 -169754635 - L1MC4 LINE L1 -24 8018 7893 230 248 107 39 chr6 12660629 12660835 -169754407 - L1 LINE L1 -1805 4341 4122 1291 173 0 18 chr6 12660993 12661219 -169754023 - AluJb SINE Alu -6 306 85 23 0 0 0 chr6 12661941 12661964 -169753278 + AT_rich Low_complexity Low_complexity 1 23 0 205 339 0 0 chr6 12662052 12662111 -169753131 + MIR SINE MIR 204 262 0 210 174 0 0 chr6 12662988 12663034 -169752208 + (TATG)n Simple_repeat Simple_repeat 2 47 0 991 107 0 21 chr6 12663108 12663248 -169751994 - AluSp/q SINE Alu -10 303 167 1143 113 0 0 chr6 12663350 12663500 -169751742 - AluSq/x SINE Alu -163 150 1 198 269 60 30 chr6 12663981 12664048 -169751194 + L2 LINE L2 3200 3268 -4 21 36 0 0 chr6 12666612 12666640 -169748602 + AT_rich Low_complexity Low_complexity 1 28 0 571 301 42 14 chr6 12666748 12666964 -169748278 - MIR SINE MIR 0 262 41 282 248 142 0 chr6 12667011 12667124 -169748118 + MIR SINE MIR 3 131 -131 971 228 19 5 chr6 12667372 12667587 -169747655 - MER20 DNA MER1_type 0 219 2 265 243 155 10 chr6 12669703 12669806 -169745436 + MIR SINE MIR 32 149 -113 375 23 0 0 chr6 12669832 12669876 -169745366 + (TG)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr6 12670854 12670883 -169744359 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr6 12671257 12671286 -169743956 + GC_rich Low_complexity Low_complexity 1 29 0 219 88 0 0 chr6 12671616 12671650 -169743592 + (TTAGGG)n Simple_repeat Simple_repeat 5 38 0 2200 115 3 0 chr6 12672588 12672884 -169742358 - AluSq SINE Alu -16 297 1 220 229 0 60 chr6 12673093 12673176 -169742066 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 6341 126 53 30 chr6 12673530 12673982 -169741260 - Tigger3b DNA MER2_type -1798 1230 790 2139 20 0 0 chr6 12673982 12674230 -169741012 + L1PA3 LINE L1 5908 6155 0 6341 126 53 30 chr6 12674230 12674900 -169740342 - Tigger3b DNA MER2_type -2238 790 82 923 94 0 16 chr6 12674900 12675027 -169740215 + AluSq/x SINE Alu 1 125 -187 485 233 0 0 chr6 12675027 12675117 -169740125 - Tigger3b DNA MER2_type -1141 90 1 316 239 128 26 chr6 12676343 12676460 -169738782 - L1ME LINE L1 -4462 1799 1671 428 229 115 23 chr6 12676485 12676673 -169738569 - MER58C DNA MER1_type -2 213 1 490 262 79 6 chr6 12676683 12676847 -169738395 - L1ME LINE L1 -4638 1623 1448 208 322 0 0 chr6 12676866 12676925 -169738317 + C-rich Low_complexity Low_complexity 4 62 0 630 256 143 32 chr6 12676940 12677601 -169737641 - L1ME LINE L1 -4841 1239 526 484 284 121 57 chr6 12677822 12678245 -169736997 - L1ME LINE L1 -5618 452 3 234 150 0 0 chr6 12679114 12679154 -169736088 + (TG)n Simple_repeat Simple_repeat 2 41 0 832 265 37 58 chr6 12680136 12680600 -169734642 - L1MC5 LINE L1 -76 7885 7432 1372 195 67 49 chr6 12680897 12681286 -169733956 - MSTD LTR MaLR 0 396 1 324 312 64 0 chr6 12683081 12683206 -169732036 - L1MC4 LINE L1 -1303 6739 6607 189 171 0 0 chr6 12683424 12683459 -169731783 + (TG)n Simple_repeat Simple_repeat 1 35 0 430 216 216 22 chr6 12684135 12684269 -169730973 - MER5B DNA MER1_type 0 178 19 564 203 164 22 chr6 12684272 12684428 -169730814 + LTR37A LTR ERV1 96 297 -129 414 0 0 0 chr6 12684428 12684474 -169730768 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 564 203 164 22 chr6 12684474 12684549 -169730693 + LTR37A LTR ERV1 297 360 -66 205 279 25 63 chr6 12686655 12686734 -169728508 - MER5A DNA MER1_type -24 165 90 263 222 0 0 chr6 12686755 12686809 -169728433 - L1ME LINE L1 -308 5796 5743 254 180 20 0 chr6 12686815 12686865 -169728377 - L2 LINE L2 0 3313 3263 207 270 100 40 chr6 12687041 12687141 -169728101 + L2 LINE L2 2191 2296 -1018 278 258 56 34 chr6 12687714 12687892 -169727350 - L1ME LINE L1 -246 5875 5694 255 260 42 10 chr6 12688657 12688753 -169726489 - L1ME LINE L1 -2689 3457 3359 21 0 0 0 chr6 12693642 12693663 -169721579 + AT_rich Low_complexity Low_complexity 1 21 0 254 345 0 0 chr6 12694136 12694223 -169721019 + L1MC/D LINE L1 5732 5818 -1990 216 0 0 0 chr6 12695230 12695254 -169719988 + (T)n Simple_repeat Simple_repeat 1 24 0 873 266 86 89 chr6 12696049 12696966 -169718276 - L1ME LINE L1 -975 5154 4216 672 288 143 32 chr6 12696968 12698167 -169717075 - L1ME LINE L1 -1924 4205 2874 22 0 0 0 chr6 12698863 12698885 -169716357 + AT_rich Low_complexity Low_complexity 1 22 0 37 62 0 0 chr6 12699212 12699277 -169715965 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr6 12699324 12699345 -169715897 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 12699781 12699804 -169715438 + AT_rich Low_complexity Low_complexity 1 23 0 615 192 0 77 chr6 12700733 12700889 -169714353 - MER104 DNA Tc2 -1 179 36 2550 0 50 0 chr6 12701881 12702163 -169713079 - AluYa8 SINE Alu -14 296 1 283 306 12 24 chr6 12702358 12702443 -169712799 + L2 LINE L2 3228 3311 -2 273 167 67 17 chr6 12703009 12703069 -169712173 + MER63 DNA MER1_type 686 748 -88 1489 126 0 13 chr6 12703433 12703663 -169711579 + MER46A DNA MER2_type 1 227 -9 2719 226 36 12 chr6 12704208 12705129 -169710113 + L1M4c LINE L1 2119 3066 -3316 22 103 0 0 chr6 12705636 12705714 -169709528 + AT_rich Low_complexity Low_complexity 1 78 0 297 135 0 0 chr6 12705882 12705934 -169709308 + (TAA)n Simple_repeat Simple_repeat 1 52 0 512 276 122 6 chr6 12705948 12706129 -169709113 - MIR SINE MIR -33 229 28 25 31 0 0 chr6 12706456 12706488 -169708754 + AT_rich Low_complexity Low_complexity 1 32 0 228 320 32 0 chr6 12706537 12706662 -169708580 - L1ME LINE L1 -4527 1602 1474 321 271 34 34 chr6 12706779 12706986 -169708256 - L1ME LINE L1 -4933 1377 1171 611 323 107 42 chr6 12707015 12707123 -169708119 - L1ME LINE L1 -5004 1115 1015 1312 191 58 65 chr6 12707123 12707432 -169707810 - AluJo SINE Alu -4 308 2 611 323 107 42 chr6 12707432 12707875 -169707367 - L1ME LINE L1 -5104 1015 528 327 311 0 0 chr6 12708681 12708771 -169706471 - L1MC4 LINE L1 -1339 6703 6614 357 361 94 18 chr6 12708996 12709506 -169705736 - L1M4 LINE L1 -1545 4601 4053 604 216 27 2 chr6 12709591 12709757 -169705485 - L1MEc LINE L1 -3221 3720 3553 1612 157 17 58 chr6 12709820 12710164 -169705078 - Tigger1 DNA MER2_type -3 2415 2086 1497 86 5 5 chr6 12710164 12710385 -169704857 - pTR5 LTR ERV1 -2046 392 172 365 194 32 0 chr6 12710392 12710485 -169704757 - LTR30 LTR ERV1 -83 639 544 5476 113 48 62 chr6 12710485 12711662 -169703580 - pTR5 LTR ERV1 -413 2025 732 2379 65 0 43 chr6 12711667 12711990 -169703252 - AluY SINE Alu -2 309 1 12675 123 16 4 chr6 12711990 12714030 -169701212 - Tigger1 DNA MER2_type -331 2087 24 1370 258 112 25 chr6 12714036 12714601 -169700641 - MLT1E2 LTR MaLR 0 626 13 780 218 153 41 chr6 12714648 12715061 -169700181 - L1MEc LINE L1 -4537 2585 2127 205 254 0 17 chr6 12715061 12715120 -169700122 + CT-rich Low_complexity Low_complexity 2 59 0 388 228 48 55 chr6 12715137 12715282 -169699960 - L1MEc LINE L1 -4880 1959 1816 302 267 228 6 chr6 12715665 12715845 -169699397 - L1MEc LINE L1 -5847 576 357 329 284 72 36 chr6 12715918 12716260 -169698982 - L2 LINE L2 -211 3102 2751 33 56 0 0 chr6 12716626 12716680 -169698562 + AT_rich Low_complexity Low_complexity 1 54 0 277 346 97 51 chr6 12716680 12717307 -169697935 + L2 LINE L2 1614 2269 -1045 341 303 120 0 chr6 12717332 12717474 -169697768 - L1ME4a LINE L1 -243 5878 5720 249 33 0 0 chr6 12718045 12718075 -169697167 + (T)n Simple_repeat Simple_repeat 1 30 0 256 242 66 0 chr6 12720186 12720277 -169694965 + HAL1b LINE L1 991 1087 -261 241 245 47 28 chr6 12721801 12721907 -169693335 - LTR31 LTR ERV1 -8 611 504 2023 116 14 20 chr6 12729709 12730002 -169685240 - AluSx SINE Alu -20 292 2 23 0 0 0 chr6 12730005 12730028 -169685214 + AT_rich Low_complexity Low_complexity 1 23 0 199 283 217 22 chr6 12730186 12730278 -169684964 + MER5A DNA MER1_type 35 144 -45 303 336 81 53 chr6 12730364 12730724 -169684518 - L2 LINE L2 -1025 2289 1920 1635 183 14 3 chr6 12731771 12732056 -169683186 + AluJo SINE Alu 1 288 -24 345 258 93 60 chr6 12732136 12732287 -169682955 + L3b LINE CR1 1224 1379 -204 961 163 12 0 chr6 12733239 12733399 -169681843 + FRAM SINE Alu 6 167 -9 33 0 0 0 chr6 12733984 12734017 -169681225 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr6 12734622 12734648 -169680594 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr6 12736259 12736280 -169678962 + AT_rich Low_complexity Low_complexity 1 21 0 2021 109 31 3 chr6 12736543 12736836 -169678406 + AluSq SINE Alu 1 301 -12 215 207 35 17 chr6 12737135 12737193 -169678049 - MIR3 SINE MIR -7 201 143 420 274 57 33 chr6 12738116 12738415 -169676827 + L1MEd LINE L1 592 897 -5222 204 371 64 48 chr6 12738791 12739104 -169676138 + L2 LINE L2 2553 2870 -444 214 274 41 14 chr6 12739209 12739282 -169675960 + L2 LINE L2 2985 3059 -213 2091 245 131 22 chr6 12741371 12742195 -169673047 + L2 LINE L2 2058 2971 -343 36484 80 8 11 chr6 12742211 12748374 -169666868 + L1PA6 LINE L1 11 6154 0 698 246 76 101 chr6 12748376 12748733 -169666509 + L2 LINE L2 2962 3309 -4 2285 107 0 0 chr6 12749003 12749293 -169665949 + AluSp SINE Alu 1 290 -23 198 348 43 0 chr6 12749540 12749609 -169665633 - L3b LINE CR1 -90 1493 1422 23 33 0 0 chr6 12753615 12753645 -169661597 + AT_rich Low_complexity Low_complexity 1 30 0 1066 231 14 5 chr6 12754500 12754721 -169660521 - MER58A DNA MER1_type -1 223 1 2189 90 0 27 chr6 12754735 12755036 -169660206 + AluSx SINE Alu 20 312 0 23 0 0 0 chr6 12755874 12755897 -169659345 + AT_rich Low_complexity Low_complexity 1 23 0 204 291 0 18 chr6 12756149 12756204 -169659038 + MIR SINE MIR 32 85 -177 198 0 0 0 chr6 12756414 12756436 -169658806 + (A)n Simple_repeat Simple_repeat 1 22 0 1715 110 0 0 chr6 12756708 12756935 -169658307 + AluSq SINE Alu 1 227 -86 1137 244 79 35 chr6 12756949 12757432 -169657810 - L1MC4a LINE L1 -19 6147 6075 1485 75 4 57 chr6 12757438 12757665 -169657577 + L1PA8 LINE L1 5948 6162 -10 2815 258 76 19 chr6 12757694 12758094 -169657148 - L1MCc LINE L1 -2848 4093 3717 5936 96 43 2 chr6 12758094 12759458 -169655784 - L1PA11 LINE L1 -1 6173 4768 2815 258 76 19 chr6 12759458 12760765 -169654477 - L1MCc LINE L1 -3224 3717 2306 1491 231 81 27 chr6 12760781 12761503 -169653739 - L1MCc LINE L1 -4851 1571 815 186 263 0 0 chr6 12762029 12762086 -169653156 + (TG)n Simple_repeat Simple_repeat 2 58 0 1298 167 82 31 chr6 12763484 12763777 -169651465 - LTR56 LTR ERV1 -137 308 1 25 75 0 0 chr6 12765027 12765080 -169650162 + AT_rich Low_complexity Low_complexity 1 53 0 200 86 29 0 chr6 12770369 12770404 -169644838 + (TA)n Simple_repeat Simple_repeat 2 37 0 411 152 54 0 chr6 12770415 12770527 -169644715 + (TA)n Simple_repeat Simple_repeat 1 118 0 305 181 121 24 chr6 12770527 12770610 -169644632 + L1MC4 LINE L1 6612 6702 -1340 213 255 31 0 chr6 12770626 12770724 -169644518 + (TA)n Simple_repeat Simple_repeat 1 101 0 244 221 81 12 chr6 12770726 12770812 -169644430 - L1MC4 LINE L1 -1339 6703 6612 472 149 21 0 chr6 12770812 12770906 -169644336 + (TA)n Simple_repeat Simple_repeat 1 96 0 277 186 35 12 chr6 12770907 12770993 -169644249 - L1MC4 LINE L1 -1341 6701 6614 234 179 0 63 chr6 12771024 12771119 -169644123 - L1MC4 LINE L1 -1339 6703 6615 317 242 0 53 chr6 12771141 12771236 -169644006 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr6 12771236 12771259 -169643983 + AT_rich Low_complexity Low_complexity 1 23 0 1652 158 50 136 chr6 12771356 12771729 -169643513 + MER47B DNA MER2_type 1 329 -1994 2075 131 10 0 chr6 12771729 12772027 -169643215 - AluSx SINE Alu -9 303 3 1652 158 50 136 chr6 12772027 12772110 -169643132 + MER47B DNA MER2_type 329 418 0 290 318 45 23 chr6 12772653 12772702 -169642540 - L2 LINE L2 -7 3306 3260 2126 94 0 4 chr6 12772702 12772979 -169642263 + AluY SINE Alu 22 297 -14 290 318 45 23 chr6 12772979 12773061 -169642181 - L2 LINE L2 -53 3260 3172 182 333 0 18 chr6 12773318 12773375 -169641867 - MIR SINE MIR -58 150 95 184 279 74 41 chr6 12773840 12773962 -169641280 + L3 LINE CR1 740 865 -712 851 157 7 0 chr6 12774054 12774194 -169641048 - FLAM_C SINE Alu -2 141 1 189 270 29 31 chr6 12775557 12775631 -169639611 - MIR SINE MIR -100 108 46 26 30 0 0 chr6 12777147 12777180 -169638062 + AT_rich Low_complexity Low_complexity 1 33 0 192 125 0 0 chr6 12777636 12777668 -169637574 + (TTG)n Simple_repeat Simple_repeat 2 33 0 456 282 67 0 chr6 12778155 12778304 -169636938 + MIR SINE MIR 96 254 -8 209 233 0 0 chr6 12778362 12778405 -169636837 - L2 LINE L2 -3 3310 3268 2182 111 7 0 chr6 12779076 12779374 -169635868 - AluSq SINE Alu -13 300 1 1083 116 40 0 chr6 12779522 12779720 -169635522 - L1P LINE L1 -837 5309 5104 3262 86 0 7 chr6 12779720 12780173 -169635069 + L1PA14 LINE L1 5710 6159 -2 633 309 39 17 chr6 12780198 12780428 -169634814 + MIR SINE MIR 10 244 -18 21 71 0 0 chr6 12780720 12780762 -169634480 + AT_rich Low_complexity Low_complexity 1 42 0 377 323 86 23 chr6 12780833 12781136 -169634106 + L1MC4a LINE L1 5009 5330 -816 801 164 0 0 chr6 12781151 12781273 -169633969 + FLAM_C SINE Alu 3 124 -19 545 337 86 27 chr6 12781288 12781837 -169633405 + L1MC4a LINE L1 5328 5908 -1900 206 73 98 0 chr6 12782673 12782714 -169632528 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 446 275 106 0 chr6 12782912 12783054 -169632188 - MIR SINE MIR -19 243 87 2357 74 0 0 chr6 12783921 12784240 -169631002 + AluY SINE Alu 1 319 0 948 115 0 121 chr6 12784242 12784416 -169630826 - FRAM SINE Alu -22 154 2 594 103 0 0 chr6 12786817 12786904 -169628338 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 22 0 0 0 chr6 12787709 12787731 -169627511 + AT_rich Low_complexity Low_complexity 1 22 0 335 330 57 32 chr6 12787931 12788246 -169626996 + L1MC4a LINE L1 426 748 -5973 2021 229 15 23 chr6 12788419 12788938 -169626304 + L1ME LINE L1 5283 5797 -369 908 231 61 60 chr6 12788950 12789389 -169625853 + L1ME1 LINE L1 5711 6112 -54 777 252 101 64 chr6 12789440 12790062 -169625180 + L1MC4a LINE L1 1004 1648 -5073 2113 157 35 39 chr6 12790074 12790436 -169624806 + MSTB1 LTR MaLR 1 362 -70 1985 140 24 0 chr6 12790436 12790728 -169624514 - AluSx SINE Alu -13 299 1 2113 157 35 39 chr6 12790728 12790797 -169624445 + MSTB1 LTR MaLR 362 430 -2 238 282 78 10 chr6 12790859 12790962 -169624280 + L1MC4a LINE L1 1860 1969 -4571 323 355 37 11 chr6 12790964 12791153 -169624089 + L1MC4a LINE L1 4109 4302 -2238 487 317 53 43 chr6 12791436 12791758 -169623484 + L1MC4a LINE L1 4777 5101 -1439 29 28 0 0 chr6 12792029 12792065 -169623177 + AT_rich Low_complexity Low_complexity 1 36 0 904 291 73 42 chr6 12792267 12792809 -169622433 + L1MC4a LINE L1 5681 6246 -1956 204 40 0 0 chr6 12792809 12792834 -169622408 + (TTGTG)n Simple_repeat Simple_repeat 3 27 0 904 291 73 42 chr6 12792834 12792906 -169622336 + L1MC4a LINE L1 6246 6314 -1888 471 300 106 51 chr6 12793147 12793691 -169621551 + L2 LINE L2 2737 3313 0 1952 148 3 13 chr6 12794150 12794460 -169620782 + AluJo SINE Alu 1 307 -5 23 54 0 0 chr6 12794467 12794504 -169620738 + AT_rich Low_complexity Low_complexity 1 37 0 433 296 86 26 chr6 12794703 12794855 -169620387 - MIR3 SINE MIR -6 202 42 853 95 107 48 chr6 12795144 12795280 -169619962 - L1MA4A LINE L1 -6 6297 6148 2152 118 137 11 chr6 12795280 12795660 -169619582 + MSTA LTR MaLR 1 428 0 853 95 107 48 chr6 12795660 12795691 -169619551 - L1MA4A LINE L1 -155 6148 6120 514 185 120 0 chr6 12795801 12795909 -169619333 + MIR SINE MIR 66 186 -76 351 157 0 39 chr6 12795909 12795986 -169619256 - Alu SINE Alu -251 51 1 698 317 52 20 chr6 12796069 12796476 -169618766 - L1ME LINE L1 -331 5790 5371 979 186 61 8 chr6 12796847 12797110 -169618132 + MER33 DNA MER1_type 26 302 -22 207 0 0 0 chr6 12797204 12797227 -169618015 + (GA)n Simple_repeat Simple_repeat 2 24 0 2307 95 0 3 chr6 12797361 12797667 -169617575 + AluSx SINE Alu 1 305 -7 493 258 32 24 chr6 12798056 12798180 -169617062 + L2 LINE L2 3188 3312 -1 424 244 122 24 chr6 12798335 12798499 -169616743 - MIR SINE MIR -25 237 58 207 306 111 37 chr6 12798531 12798639 -169616603 + L3 LINE CR1 308 423 -1154 443 317 181 5 chr6 12798798 12799019 -169616223 + L3 LINE CR1 413 672 -905 283 304 34 47 chr6 12799720 12799868 -169615374 - L2 LINE L2 -2 3311 3166 2249 97 19 10 chr6 12800118 12800427 -169614815 + AluSx SINE Alu 1 312 0 425 310 111 74 chr6 12800439 12801151 -169614091 - L2 LINE L2 -448 2866 2129 183 80 0 0 chr6 12801304 12801329 -169613913 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 667 274 62 46 chr6 12801364 12801623 -169613619 - L2 LINE L2 -90 3223 2961 755 105 105 15 chr6 12801625 12801758 -169613484 - MLT2D LTR ERVL -269 145 1 496 287 14 7 chr6 12801758 12801901 -169613341 - L2 LINE L2 -654 2660 2517 370 83 0 0 chr6 12802123 12802171 -169613071 + MSTA LTR MaLR 378 425 -3 2110 110 7 0 chr6 12802203 12802493 -169612749 - AluSp SINE Alu -12 301 10 2354 162 58 9 chr6 12802918 12803381 -169611861 + MER66B LTR ERV1 1 486 0 1855 159 0 0 chr6 12804037 12804313 -169610929 + AluJb SINE Alu 1 276 -36 243 0 0 0 chr6 12804318 12804345 -169610897 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr6 12804988 12805010 -169610232 + AT_rich Low_complexity Low_complexity 1 22 0 1748 135 69 10 chr6 12804992 12805281 -169609961 - AluJb SINE Alu -6 306 1 2329 97 3 0 chr6 12806637 12806936 -169608306 + AluSq SINE Alu 1 300 -13 208 288 0 17 chr6 12807136 12807195 -169608047 + L2 LINE L2 3190 3247 -25 203 250 21 0 chr6 12807197 12807245 -169607997 + CT-rich Low_complexity Low_complexity 1 49 0 217 225 70 14 chr6 12807247 12807318 -169607924 - L2 LINE L2 -5 3267 3193 310 208 146 21 chr6 12807505 12807601 -169607641 - L2 LINE L2 0 3313 3206 703 257 100 16 chr6 12807778 12808031 -169607211 - L2 LINE L2 -317 2996 2728 2498 64 0 0 chr6 12808032 12808327 -169606915 + AluY SINE Alu 1 295 -16 480 316 121 0 chr6 12808356 12808546 -169606696 + MIR SINE MIR 1 213 -49 222 344 33 22 chr6 12808629 12808719 -169606523 - MIR SINE MIR -155 107 17 1730 183 83 74 chr6 12808795 12808966 -169606276 + MLT1C LTR MaLR 1 169 -298 2156 124 0 3 chr6 12808966 12809273 -169605969 - AluSx SINE Alu -2 310 5 1730 183 83 74 chr6 12809273 12809559 -169605683 + MLT1C LTR MaLR 169 462 -5 1421 170 90 7 chr6 12810464 12810585 -169604657 + AluJo SINE Alu 1 111 -201 216 0 0 0 chr6 12810585 12810609 -169604633 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1421 170 90 7 chr6 12810609 12810764 -169604478 + AluJo SINE Alu 111 300 -12 2048 184 23 10 chr6 12811358 12811743 -169603499 + MLT1B LTR MaLR 1 390 0 1066 281 97 60 chr6 12811794 12812053 -169603189 + L2 LINE L2 2840 3125 -188 1927 76 0 0 chr6 12812053 12812289 -169602953 + AluY SINE Alu 60 295 -16 1066 281 97 60 chr6 12812289 12812481 -169602761 + L2 LINE L2 3125 3308 -5 241 227 136 0 chr6 12812500 12812566 -169602676 - MIR SINE MIR -1 261 187 1009 132 92 0 chr6 12812811 12812963 -169602279 + AluSg/x SINE Alu 135 300 -12 2724 32 0 3 chr6 12813960 12814270 -169600972 + AluY SINE Alu 1 309 -2 186 43 0 0 chr6 12814307 12814330 -169600912 + (TA)n Simple_repeat Simple_repeat 1 23 0 241 217 24 48 chr6 12814362 12814445 -169600797 - L1MC4 LINE L1 -1341 6701 6621 350 247 13 52 chr6 12814468 12814622 -169600620 - HAL1b LINE L1 -7 1341 1194 526 318 50 0 chr6 12814834 12815035 -169600207 - Charlie8 DNA MER1_type -2152 265 55 1842 154 7 7 chr6 12815035 12815333 -169599909 + AluJo SINE Alu 9 306 -6 204 227 0 0 chr6 12815380 12815424 -169599818 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 582 187 87 124 chr6 12815524 12815616 -169599626 - HAL1b LINE L1 -191 1157 1063 2311 107 0 3 chr6 12815616 12815924 -169599318 + AluSc SINE Alu 1 307 -2 582 187 87 124 chr6 12815924 12816130 -169599112 - HAL1b LINE L1 -285 1063 870 1933 131 34 10 chr6 12816404 12816702 -169598540 + AluJo SINE Alu 1 305 -7 265 219 109 0 chr6 12817042 12817106 -169598136 - MIR3 SINE MIR -27 181 111 2080 110 73 51 chr6 12817409 12817765 -169597477 - THE1B LTR MaLR 0 364 1 2008 157 7 0 chr6 12817851 12818151 -169597091 - AluJb SINE Alu -10 302 1 24 53 0 0 chr6 12818257 12818295 -169596947 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr6 12818365 12818388 -169596854 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2241 64 0 18 chr6 12818520 12818800 -169596442 + AluY SINE Alu 28 302 -9 240 59 0 0 chr6 12818920 12818954 -169596288 + (TG)n Simple_repeat Simple_repeat 1 34 0 541 318 106 0 chr6 12819132 12819377 -169595865 + L2 LINE L2 687 957 -2357 585 262 54 47 chr6 12819631 12819929 -169595313 - L1ME3A LINE L1 -219 5951 5652 2657 259 132 68 chr6 12820005 12821606 -169593636 + L2 LINE L2 964 2666 -648 1352 230 104 211 chr6 12821662 12821735 -169593507 - L1ME3 LINE L1 -4 6158 6079 1743 156 20 89 chr6 12821735 12821805 -169593437 + MLT1A1 LTR MaLR 1 74 -291 2220 120 0 0 chr6 12821805 12822106 -169593136 - AluSx SINE Alu -11 301 1 1743 156 20 89 chr6 12822106 12822427 -169592815 + MLT1A1 LTR MaLR 74 365 0 1352 230 104 211 chr6 12822427 12822881 -169592361 - L1ME3 LINE L1 -83 6079 5578 832 165 0 8 chr6 12822881 12823014 -169592228 - FLAM_C SINE Alu -1 132 1 1352 230 104 211 chr6 12823014 12823072 -169592170 - L1ME3 LINE L1 -584 5578 5515 1507 144 20 111 chr6 12823072 12823413 -169591829 + AluYb8 SINE Alu 1 310 -8 1352 230 104 211 chr6 12823413 12823577 -169591665 - L1ME3 LINE L1 -647 5515 5438 747 296 103 40 chr6 12823647 12824072 -169591170 + L2 LINE L2 2848 3299 -14 269 241 12 24 chr6 12824146 12824229 -169591013 + CT-rich Low_complexity Low_complexity 4 85 0 1638 165 26 0 chr6 12824374 12824640 -169590602 + AluJb SINE Alu 4 276 -36 251 291 311 0 chr6 12827564 12827667 -169587575 + L2 LINE L2 3138 3272 0 1823 161 3 40 chr6 12828392 12828716 -169586526 - AluJo SINE Alu 0 312 1 773 124 23 16 chr6 12829362 12829491 -169585751 - L1MA7 LINE L1 -130 6161 6032 763 150 22 83 chr6 12829485 12829624 -169585618 + L1MA7 LINE L1 6123 6250 -41 * 2154 107 3 13 chr6 12829624 12829932 -169585310 - AluSg SINE Alu -5 305 1 763 150 22 83 chr6 12829932 12829972 -169585270 + L1MA7 LINE L1 6250 6291 0 2184 112 3 7 chr6 12830813 12831108 -169584134 - AluSx SINE Alu -18 294 1 284 336 29 36 chr6 12831127 12831267 -169583975 + L2 LINE L2 3134 3272 0 325 300 53 41 chr6 12831305 12831475 -169583767 - L2 LINE L2 -202 3070 2899 409 230 7 82 chr6 12831874 12832009 -169583233 - L2 LINE L2 -5 3267 3143 327 219 115 31 chr6 12832079 12832175 -169583067 - MIR SINE MIR -86 176 73 216 86 0 0 chr6 12832304 12832339 -169582903 + (CA)n Simple_repeat Simple_repeat 2 36 0 194 312 46 9 chr6 12832834 12832943 -169582299 - L3b LINE CR1 -350 1233 1121 3450 191 40 8 chr6 12833052 12833675 -169581567 + MER82 DNA MER2_type 11 653 0 25 31 0 0 chr6 12833918 12833950 -169581292 + AT_rich Low_complexity Low_complexity 1 32 0 40 0 0 0 chr6 12834929 12834969 -169580273 + AT_rich Low_complexity Low_complexity 1 40 0 365 137 29 29 chr6 12834969 12835108 -169580134 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 273 299 118 76 chr6 12836190 12836334 -169578908 - MIR3 SINE MIR -8 200 51 270 286 104 39 chr6 12837276 12837458 -169577784 - MIR SINE MIR -67 195 2 346 196 134 10 chr6 12837937 12838034 -169577208 + MIR3 SINE MIR 48 156 -52 998 168 100 0 chr6 12838529 12838719 -169576523 + MER3 DNA MER1_type 1 209 0 1727 132 88 7 chr6 12839130 12839402 -169575840 - AluSx SINE Alu -18 294 1 3743 47 2 11 chr6 12839666 12840117 -169575125 - L1PA5 LINE L1 0 6154 5708 2227 100 3 10 chr6 12840733 12841033 -169574209 + AluSx SINE Alu 4 301 -11 824 328 31 22 chr6 12842141 12842461 -169572781 + MLT1J LTR MaLR 10 332 -179 1787 161 55 0 chr6 12842469 12842760 -169572482 + AluJo SINE Alu 1 307 -5 785 281 136 13 chr6 12843632 12843942 -169571300 + MLT1J LTR MaLR 159 506 -5 2085 94 3 21 chr6 12843997 12844285 -169570957 - AluSx SINE Alu -1 311 29 682 244 19 6 chr6 12845227 12845387 -169569855 + MIR SINE MIR 20 181 -81 186 323 202 0 chr6 12845570 12845669 -169569573 + L2 LINE L2 2851 2969 -303 2552 132 62 7 chr6 12845808 12846130 -169569112 - Tigger2 DNA MER2_type 0 2718 2366 397 0 38 0 chr6 12846130 12846183 -169569059 + (GGA)n Simple_repeat Simple_repeat 2 56 0 2552 132 62 7 chr6 12846183 12846278 -169568964 - Tigger2 DNA MER2_type -352 2366 2278 404 179 15 0 chr6 12846274 12846341 -169568901 - Tigger2 DNA MER2_type -2650 68 1 * 589 200 48 61 chr6 12846851 12847081 -169568161 - Charlie1a DNA MER1_type 0 1455 1229 1940 197 44 19 chr6 12847082 12847514 -169567728 - Charlie1a DNA MER1_type -590 865 423 797 184 21 14 chr6 12847540 12847681 -169567561 - Charlie1a DNA MER1_type -1313 142 1 223 291 101 42 chr6 12848020 12848187 -169567055 - MIR SINE MIR -46 216 40 301 258 0 0 chr6 12849798 12849860 -169565382 + L2 LINE L2 3250 3311 -2 2191 126 7 0 chr6 12850371 12850681 -169564561 - AluSx SINE Alu 0 312 1 561 239 112 30 chr6 12850710 12850894 -169564348 + MLT1A2 LTR MaLR 3 190 -184 710 192 23 57 chr6 12851079 12851256 -169563986 + MLT1A2 LTR MaLR 204 374 0 370 250 214 0 chr6 12851906 12852050 -169563192 - MER5A DNA MER1_type -6 183 4 534 189 78 46 chr6 12854748 12854901 -169560341 + LTR45B LTR ERV1 332 489 0 204 125 0 0 chr6 12855733 12855765 -169559477 + (GAA)n Simple_repeat Simple_repeat 1 32 0 408 232 22 111 chr6 12856115 12856296 -169558946 - L2 LINE L2 -2 3311 3147 419 334 109 62 chr6 12856555 12857371 -169557871 + L2 LINE L2 2334 3185 -87 227 309 44 34 chr6 12857941 12858145 -169557097 + L1ME LINE L1 3628 3833 -2313 226 295 13 0 chr6 12858597 12858675 -169556567 - MER116 DNA Mariner -1 79 1 1797 149 9 35 chr6 12858907 12859223 -169556019 + AluJo SINE Alu 1 308 -4 1748 167 20 7 chr6 12861014 12861314 -169553928 + AluJb SINE Alu 1 304 -8 341 312 112 54 chr6 12861976 12862592 -169552650 + L1ME LINE L1 4089 4847 -1299 181 288 51 0 chr6 12862704 12862763 -169552479 + L2 LINE L2 3251 3312 -1 226 318 143 32 chr6 12863182 12863559 -169551683 - HAL1 LINE L1 -53 2454 2036 729 264 60 0 chr6 12863736 12864001 -169551241 + L1ME LINE L1 5501 5781 -340 194 340 55 74 chr6 12864457 12864713 -169550529 - L2 LINE L2 -2845 469 219 2277 123 0 0 chr6 12865432 12865734 -169549508 + AluSq SINE Alu 1 302 -11 205 283 85 38 chr6 12867073 12867179 -169548063 + MIR SINE MIR 14 124 -138 1555 96 50 0 chr6 12867360 12867579 -169547663 + MER30 DNA MER1_type 1 230 0 1728 183 15 66 chr6 12868130 12868541 -169546701 + MLT1B LTR MaLR 1 390 0 448 301 72 80 chr6 12869314 12869663 -169545579 - L2 LINE L2 -62 3210 2865 1581 122 8 0 chr6 12869905 12870159 -169545083 + Tigger1 DNA MER2_type 1 256 -2162 417 71 0 0 chr6 12870170 12870226 -169545016 + Tigger1 DNA MER2_type 1415 1470 -948 * 6167 106 18 1 chr6 12870225 12871165 -169544077 + Tigger1 DNA MER2_type 617 1572 -846 12264 177 30 11 chr6 12871170 12873832 -169541410 - L1 LINE L1 -1000 6565 3851 1765 264 48 19 chr6 12873835 12874815 -169540427 - L1 LINE L1 -3814 3751 2740 2119 124 0 29 chr6 12875295 12875609 -169539633 - AluSq SINE Alu -8 305 1 429 300 83 83 chr6 12875818 12876181 -169539061 - L2 LINE L2 -47 3225 2863 198 0 0 0 chr6 12876447 12876469 -169538773 + (T)n Simple_repeat Simple_repeat 1 22 0 399 210 121 57 chr6 12877365 12877489 -169537753 + L2 LINE L2 3182 3313 0 301 272 99 0 chr6 12877559 12877672 -169537570 - MIR SINE MIR -50 158 34 540 83 31 10 chr6 12877771 12877867 -169537375 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 28 86 0 0 chr6 12878381 12878451 -169536791 + AT_rich Low_complexity Low_complexity 1 70 0 243 0 0 0 chr6 12878645 12878672 -169536570 + (TG)n Simple_repeat Simple_repeat 1 27 0 2550 71 0 0 chr6 12878724 12879033 -169536209 + AluY SINE Alu 2 310 -1 264 355 45 0 chr6 12879226 12879336 -169535906 - L2 LINE L2 -20 3252 3138 245 307 139 7 chr6 12879479 12879616 -169535626 - L2 LINE L2 -219 3053 2899 207 302 125 0 chr6 12880072 12880168 -169535074 - L2 LINE L2 -785 2529 2422 866 243 19 10 chr6 12880174 12880380 -169534862 - MIR SINE MIR 0 262 55 289 329 47 47 chr6 12880360 12880594 -169534648 - L2 LINE L2 -1067 2247 2014 * 2291 93 10 16 chr6 12881452 12881765 -169533477 + AluSx SINE Alu 1 311 -1 219 311 16 33 chr6 12881951 12882073 -169533169 + L2 LINE L2 3126 3245 -68 22 0 0 0 chr6 12883272 12883294 -169531948 + AT_rich Low_complexity Low_complexity 1 22 0 1980 141 7 0 chr6 12883455 12883761 -169531481 + AluSx SINE Alu 1 308 0 204 206 82 55 chr6 12884312 12884385 -169530857 - MIR SINE MIR -96 166 92 261 180 0 0 chr6 12885416 12885466 -169529776 + CT-rich Low_complexity Low_complexity 3 52 0 744 138 69 0 chr6 12887232 12887348 -169527894 + AluJb SINE Alu 161 284 -28 480 35 0 0 chr6 12887348 12887406 -169527836 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 200 122 41 0 chr6 12887406 12887455 -169527787 + GA-rich Low_complexity Low_complexity 3 53 0 1136 75 0 32 chr6 12887455 12887641 -169527601 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 26 88 0 0 chr6 12887917 12887985 -169527257 + AT_rich Low_complexity Low_complexity 1 68 0 2070 107 42 0 chr6 12888413 12888702 -169526540 - AluSp SINE Alu -12 301 1 469 185 66 13 chr6 12888862 12889013 -169526229 - MER113 DNA MER1_type? -361 160 2 1921 142 0 25 chr6 12889674 12889990 -169525252 + AluJo SINE Alu 1 308 -4 402 31 47 0 chr6 12890491 12890555 -169524687 + (TC)n Simple_repeat Simple_repeat 2 68 0 378 0 0 0 chr6 12890555 12890597 -169524645 + (CA)n Simple_repeat Simple_repeat 1 42 0 180 77 0 0 chr6 12890916 12890942 -169524300 + (GGGTG)n Simple_repeat Simple_repeat 4 29 0 348 330 68 0 chr6 12895770 12895873 -169519369 - MIR SINE MIR -57 151 42 180 0 0 0 chr6 12897763 12897783 -169517459 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr6 12898325 12898354 -169516888 + AT_rich Low_complexity Low_complexity 1 29 0 221 268 42 56 chr6 12901107 12901178 -169514064 + MIR SINE MIR 83 152 -56 252 306 35 0 chr6 12901932 12902017 -169513225 - MIR SINE MIR -68 140 53 21 0 0 0 chr6 12902288 12902309 -169512933 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 3 0 chr6 12902367 12902676 -169512566 - AluSp SINE Alu -3 310 1 191 304 30 67 chr6 12903008 12903143 -169512099 - MIR SINE MIR -83 179 50 23 0 0 0 chr6 12904333 12904356 -169510886 + AT_rich Low_complexity Low_complexity 1 23 0 4018 119 2 5 chr6 12904359 12904970 -169510272 - L1PB3 LINE L1 -1 6153 5545 279 333 56 0 chr6 12905132 12905258 -169509984 + MER94 DNA DNA 2 134 0 217 347 0 14 chr6 12905400 12905472 -169509770 + L2 LINE L2 3202 3272 0 242 259 82 24 chr6 12905849 12905934 -169509308 - L2 LINE L2 -896 2418 2329 2595 128 6 60 chr6 12905946 12906371 -169508871 + MER65A LTR ERV1 1 400 -45 1750 176 14 3 chr6 12906371 12906660 -169508582 - AluJo SINE Alu -20 292 1 2595 128 6 60 chr6 12906660 12906704 -169508538 + MER65A LTR ERV1 400 445 0 494 235 16 43 chr6 12906713 12906900 -169508342 - L1MC5 LINE L1 -55 7906 7725 624 220 83 38 chr6 12907062 12907276 -169507966 - MIR SINE MIR -14 248 13 438 155 0 0 chr6 12908106 12908177 -169507065 - MER92C LTR ERV1 0 554 484 335 235 174 0 chr6 12908322 12908420 -169506822 - MER92B LTR ERV1 -521 115 1 357 196 22 33 chr6 12909265 12909357 -169505885 - LTR37A LTR ERV1 -326 100 10 2320 210 31 76 chr6 12909364 12910399 -169504843 - MER31-int LTR ERV1 -679 5492 3625 343 196 49 29 chr6 12910464 12910566 -169504676 - MER31-int LTR ERV1 -1662 3274 3171 1145 135 162 26 chr6 12910762 12911028 -169504214 - MSTA LTR MaLR 0 428 127 188 341 66 11 chr6 12911179 12911270 -169503972 - MER5B DNA MER1_type -82 96 1 2394 128 5 11 chr6 12911893 12912260 -169502982 + MLT1A1 LTR MaLR 1 365 0 2153 132 0 3 chr6 12912437 12912740 -169502502 - AluSx SINE Alu -10 302 1 338 275 20 40 chr6 12912917 12913117 -169502125 - MER31-int LTR ERV1 -3061 1875 1680 291 259 15 15 chr6 12913258 12913389 -169501853 - MER31-int LTR ERV1 -3493 1443 1313 451 288 4 49 chr6 12913511 12913754 -169501488 - MER31-int LTR ERV1 -3664 1272 1041 570 295 69 6 chr6 12914213 12914386 -169500856 + MIR SINE MIR 3 186 -76 1976 136 4 0 chr6 12914470 12914778 -169500464 - AluJb SINE Alu 0 309 1 360 331 42 14 chr6 12914825 12914967 -169500275 - MER5A DNA MER1_type -6 183 38 2197 93 7 0 chr6 12915017 12915297 -169499945 + AluSc SINE Alu 1 282 -27 510 169 16 33 chr6 12915313 12915496 -169499746 + (TA)n Simple_repeat Simple_repeat 1 180 0 326 309 259 10 chr6 12915616 12915817 -169499425 + L2 LINE L2 3020 3270 -2 310 115 19 0 chr6 12915942 12915994 -169499248 + L1M4 LINE L1 5203 5255 -891 480 238 95 26 chr6 12916533 12916722 -169498520 + L1ME3A LINE L1 5959 6160 -10 239 281 0 0 chr6 12916750 12916807 -169498435 + T-rich Low_complexity Low_complexity 1 57 0 2968 245 70 54 chr6 12918002 12919652 -169495590 - L1ME2 LINE L1 -11 6948 5243 2045 124 0 7 chr6 12919652 12919961 -169495281 + AluSg SINE Alu 2 308 0 2968 245 70 54 chr6 12919961 12920687 -169494555 - L1ME2 LINE L1 -1716 5243 4530 270 219 0 0 chr6 12920688 12920752 -169494490 + (TA)n Simple_repeat Simple_repeat 2 65 0 230 239 0 23 chr6 12920752 12920840 -169494402 - L1MC4 LINE L1 -1339 6703 6618 24 32 0 0 chr6 12920849 12920880 -169494362 + AT_rich Low_complexity Low_complexity 1 31 0 1990 132 6 3 chr6 12920896 12921223 -169494019 - MER46B DNA MER2_type -1 235 33 856 321 47 24 chr6 12921261 12921809 -169493433 - L1ME2 LINE L1 -5004 1419 859 1916 102 0 0 chr6 12923151 12923397 -169491845 - AluSq SINE Alu -16 297 52 235 239 35 115 chr6 12923901 12924014 -169491228 - L1ME2 LINE L1 -5980 443 340 1612 184 38 14 chr6 12924068 12924356 -169490886 + AluJb SINE Alu 1 295 -17 258 283 12 81 chr6 12924457 12924506 -169490736 - L1ME2 LINE L1 -6254 169 118 1622 177 0 34 chr6 12924506 12924827 -169490415 - AluJo SINE Alu 0 311 1 258 283 12 81 chr6 12924827 12924949 -169490293 - L1ME2 LINE L1 -6305 118 9 288 0 0 0 chr6 12924995 12925027 -169490215 + (CA)n Simple_repeat Simple_repeat 2 33 0 1064 231 9 5 chr6 12925096 12925312 -169489930 + MER20 DNA MER1_type 3 219 0 243 0 0 0 chr6 12975617 12975644 -169439598 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1542 170 60 7 chr6 12978831 12979114 -169436128 - AluJb SINE Alu -14 298 1 328 238 103 8 chr6 12979151 12979277 -169435965 - MIR SINE MIR -6 256 119 693 164 0 0 chr6 12979533 12979643 -169435599 + FLAM_C SINE Alu 2 111 -32 276 100 0 0 chr6 12979649 12979689 -169435553 + (TTA)n Simple_repeat Simple_repeat 2 41 0 515 217 19 0 chr6 12979948 12980054 -169435188 + MER5A DNA MER1_type 2 109 -80 2420 157 17 33 chr6 12980379 12980903 -169434339 + MER6A DNA MER2_type 43 605 0 2508 55 0 10 chr6 12981014 12981326 -169433916 - AluY SINE Alu -2 309 1 2162 117 17 0 chr6 12981492 12981782 -169433460 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr6 12981782 12981805 -169433437 + (GA)n Simple_repeat Simple_repeat 2 24 0 618 21 21 32 chr6 12981986 12982079 -169433163 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 1479 189 10 38 chr6 12982080 12982572 -169432670 - AluJo SINE Alu 0 483 1 341 261 135 79 chr6 12982625 12982840 -169432402 + L2 LINE L2 3045 3271 -1 5341 128 2 15 chr6 12984261 12984472 -169430770 - L1PA13 LINE L1 -7 6156 5944 2271 122 125 10 chr6 12984472 12984856 -169430386 - MSTA LTR MaLR 0 428 1 9636 172 18 10 chr6 12984856 12986495 -169428747 - MSTA-int LTR MaLR 0 1651 1 2230 118 121 23 chr6 12986495 12986885 -169428357 - MSTA LTR MaLR 0 428 1 5341 128 2 15 chr6 12986885 12987521 -169427721 - L1PA13 LINE L1 -216 5947 5318 1967 120 33 7 chr6 12987529 12987828 -169427414 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 12988209 12988231 -169427011 + AT_rich Low_complexity Low_complexity 1 22 0 181 233 17 50 chr6 12990400 12990460 -169424782 - L2 LINE L2 -55 3258 3201 403 184 22 0 chr6 12990748 12990834 -169424408 + L1ME3 LINE L1 6012 6100 -62 180 0 0 0 chr6 12991680 12991700 -169423542 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 463 240 13 52 chr6 12991835 12991989 -169423253 - MER5B DNA MER1_type -11 167 20 273 180 0 0 chr6 12992384 12992434 -169422808 - Alu SINE Alu -2 300 251 2058 146 3 3 chr6 12992468 12992776 -169422466 - AluSx SINE Alu -4 308 1 944 123 0 0 chr6 12992787 12992909 -169422333 - FLAM_C SINE Alu -21 122 1 1542 192 11 7 chr6 12994355 12994636 -169420606 - AluJo SINE Alu -30 282 1 245 229 48 24 chr6 12995281 12995364 -169419878 - L2 LINE L2 0 3313 3229 198 171 0 0 chr6 12995474 12995515 -169419727 + A-rich Low_complexity Low_complexity 1 41 0 1182 261 121 2 chr6 12995700 12996098 -169419144 - LTR16B LTR ERVL -2 462 18 234 257 98 87 chr6 12996100 12996150 -169419092 - MLT1L LTR MaLR -13 602 554 885 193 156 0 chr6 12996150 12996342 -169418900 - MER58A DNA MER1_type -1 223 2 234 257 98 87 chr6 12996342 12996474 -169418768 - MLT1L LTR MaLR -61 554 418 1036 250 79 53 chr6 12996578 12997283 -169417959 - L2 LINE L2 -15 3298 2555 1123 159 92 0 chr6 12997338 12997533 -169417709 - MER30 DNA MER1_type -17 213 1 591 311 45 8 chr6 12997533 12997800 -169417442 - L2 LINE L2 -820 2494 2218 234 242 0 76 chr6 12997802 12997868 -169417374 - MLT1J LTR MaLR -340 171 111 198 235 141 0 chr6 12997963 12998048 -169417194 + MIR SINE MIR 100 196 -66 2243 121 3 0 chr6 12998060 12998367 -169416875 + AluSq SINE Alu 1 308 -5 381 22 0 0 chr6 12999217 12999263 -169415979 + (TG)n Simple_repeat Simple_repeat 1 46 0 408 71 0 0 chr6 12999263 12999319 -169415923 + (GA)n Simple_repeat Simple_repeat 2 57 0 2467 130 19 3 chr6 12999319 12999697 -169415545 - MLT1B LTR MaLR -6 384 1 213 39 0 0 chr6 12999697 12999723 -169415519 + (TG)n Simple_repeat Simple_repeat 2 27 0 215 152 22 0 chr6 12999731 12999777 -169415465 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 215 233 23 23 chr6 12999811 12999897 -169415345 + (TA)n Simple_repeat Simple_repeat 1 86 0 342 0 0 0 chr6 13000653 13000691 -169414551 + (TG)n Simple_repeat Simple_repeat 2 39 0 1934 146 0 0 chr6 13000691 13000971 -169414271 - AluJb SINE Alu -27 285 6 262 229 16 0 chr6 13001047 13001108 -169414134 + MER5A DNA MER1_type 34 95 -94 549 299 6 0 chr6 13001390 13001567 -169413675 + MIR SINE MIR 80 257 -5 2435 325 121 37 chr6 13001942 13003892 -169411350 - L2 LINE L2 -49 3264 1147 25 0 0 0 chr6 13004372 13004397 -169410845 + AT_rich Low_complexity Low_complexity 1 25 0 752 211 48 6 chr6 13005376 13005542 -169409700 + MER5B DNA MER1_type 2 174 -4 535 229 153 0 chr6 13005554 13005711 -169409531 - MER5A DNA MER1_type 0 189 9 388 294 133 39 chr6 13005750 13006111 -169409131 + L2 LINE L2 2917 3270 -2 366 203 76 0 chr6 13006179 13006258 -169408984 - MER5B DNA MER1_type -30 148 64 195 271 45 75 chr6 13006865 13006998 -169408244 - MIR SINE MIR -75 187 59 266 247 11 21 chr6 13007864 13007957 -169407285 - L3 LINE CR1 -181 1396 1305 208 240 141 50 chr6 13008212 13008333 -169406909 - L3 LINE CR1 -499 1078 947 2131 227 23 24 chr6 13008865 13008899 -169406343 - L1 LINE L1 -1100 5046 5013 1760 178 20 0 chr6 13008899 13009191 -169406051 - AluJo SINE Alu -14 298 1 2131 227 23 24 chr6 13009191 13009732 -169405510 - L1 LINE L1 -1133 5013 4472 901 165 15 0 chr6 13009745 13009878 -169405364 - AluJo SINE Alu -177 135 1 394 164 39 0 chr6 13009879 13009983 -169405259 - L1 LINE L1 -1669 4477 4370 396 243 27 81 chr6 13009988 13010136 -169405106 - MIR SINE MIR -105 157 18 272 303 100 40 chr6 13010862 13010908 -169404334 + L2 LINE L2 2440 2482 -832 186 43 0 0 chr6 13010908 13010931 -169404311 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 272 303 100 40 chr6 13010931 13011135 -169404107 + L2 LINE L2 2482 2705 -609 968 292 62 28 chr6 13011320 13011789 -169403453 - LTR33A LTR ERVL -24 499 15 226 306 42 14 chr6 13011791 13011863 -169403379 + L2 LINE L2 2987 3060 -212 489 278 122 10 chr6 13012033 13012321 -169402921 - L1MC/D LINE L1 -2234 5574 5255 2032 108 0 4 chr6 13012619 13012888 -169402354 - AluSq SINE Alu -18 295 28 636 264 119 42 chr6 13013578 13014341 -169400901 + L1MDa LINE L1 1640 2536 -4185 294 213 162 78 chr6 13014493 13014532 -169400710 + L1MDa LINE L1 2526 2560 -3980 1310 231 72 19 chr6 13014532 13014908 -169400334 - MSTD LTR MaLR 0 396 1 294 213 162 78 chr6 13014908 13015048 -169400194 + L1MDa LINE L1 2560 2687 -3853 1914 142 0 24 chr6 13015048 13015360 -169399882 + AluSx SINE Alu 1 305 0 294 213 162 78 chr6 13015360 13015512 -169399730 + L1MDa LINE L1 2687 2887 -3653 349 253 18 18 chr6 13015616 13015728 -169399514 + HERVL LTR ERVL 3074 3185 -2300 778 316 132 32 chr6 13015836 13016546 -169398696 + HERVL LTR ERVL 3377 4157 -1607 527 319 19 5 chr6 13017007 13017214 -169398028 + LTR33 LTR ERVL 5 214 -307 605 257 34 6 chr6 13017257 13017432 -169397810 + LTR33 LTR ERVL 306 485 -36 922 198 11 6 chr6 13020224 13020401 -169394841 + MLT1D LTR MaLR 1 178 -327 669 67 0 0 chr6 13020401 13020490 -169394752 + L1P5 LINE L1 5453 5541 -610 1974 159 3 0 chr6 13020765 13021074 -169394168 - AluJb SINE Alu -2 310 1 288 331 96 12 chr6 13021151 13021317 -169393925 - MIR SINE MIR -71 191 12 22 0 0 0 chr6 13021362 13021384 -169393858 + AT_rich Low_complexity Low_complexity 1 22 0 904 272 128 37 chr6 13022563 13023218 -169392024 + Charlie7 DNA MER1_type 28 742 -1870 22 70 0 0 chr6 13023367 13023410 -169391832 + AT_rich Low_complexity Low_complexity 1 43 0 1270 144 95 27 chr6 13023651 13023873 -169391369 + AluJb SINE Alu 1 237 -75 700 272 118 45 chr6 13024031 13024479 -169390763 + L2 LINE L2 2832 3312 -1 278 184 20 0 chr6 13024902 13024951 -169390291 + 5S rRNA rRNA 1 50 -71 22 0 0 0 chr6 13025787 13025809 -169389433 + AT_rich Low_complexity Low_complexity 1 22 0 191 234 198 54 chr6 13026556 13026667 -169388575 - L2 LINE L2 0 3272 3146 238 0 81 0 chr6 13029797 13029834 -169385408 + A-rich Low_complexity Low_complexity 3 42 0 240 191 0 0 chr6 13030138 13030185 -169385057 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 317 235 12 24 chr6 13030786 13030871 -169384371 + MIR3 SINE MIR 109 192 -16 319 236 55 67 chr6 13031163 13031328 -169383914 - MER112 DNA MER1_type -64 196 34 381 328 0 37 chr6 13031611 13031745 -169383497 + MIR SINE MIR 22 150 -112 265 105 0 0 chr6 13031747 13031785 -169383457 + Alu SINE Alu 1 38 -263 325 94 0 57 chr6 13031902 13031955 -169383287 + AluJb SINE Alu 240 289 -11 5404 150 40 8 chr6 13032006 13033219 -169382023 + L1MA6 LINE L1 5053 6300 0 407 268 27 0 chr6 13033253 13033365 -169381877 + MIR SINE MIR 147 261 -1 5654 144 33 14 chr6 13033858 13033921 -169381321 + L1PB1 LINE L1 4340 4400 -1769 261 57 0 0 chr6 13033921 13033956 -169381286 + (CA)n Simple_repeat Simple_repeat 2 36 0 5654 144 33 14 chr6 13033956 13035685 -169379557 + L1PB1 LINE L1 4400 6169 0 378 254 79 28 chr6 13035950 13036107 -169379135 - MIR SINE MIR -40 168 3 387 334 83 21 chr6 13036310 13036837 -169378405 + L1ME4a LINE L1 5562 6121 0 2423 73 0 16 chr6 13037336 13037650 -169377592 - AluY SINE Alu 0 311 3 505 212 73 60 chr6 13039781 13039932 -169375310 + MIR SINE MIR 90 242 -20 222 118 0 0 chr6 13040329 13040363 -169374879 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1879 184 77 5 chr6 13040465 13040868 -169374374 - MSTB1 LTR MaLR 0 432 1 252 59 0 0 chr6 13041237 13041271 -169373971 + (TC)n Simple_repeat Simple_repeat 1 34 0 611 157 38 143 chr6 13041356 13041566 -169373676 - 7SK RNA RNA -5 188 1 1916 87 4 4 chr6 13043107 13043359 -169371883 - AluSx SINE Alu -60 252 1 23 33 0 0 chr6 13044085 13044115 -169371127 + AT_rich Low_complexity Low_complexity 1 30 0 229 358 18 18 chr6 13044243 13044352 -169370890 + L3 LINE CR1 1446 1554 -23 28 0 0 0 chr6 13044392 13044420 -169370822 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr6 13044792 13044836 -169370406 + AT_rich Low_complexity Low_complexity 1 44 0 600 286 12 74 chr6 13046575 13046866 -169368376 + MIR SINE MIR 2 262 0 243 384 13 33 chr6 13047073 13047224 -169368018 + L2 LINE L2 2150 2297 -1017 929 193 16 21 chr6 13047319 13047506 -169367736 + MER5A DNA MER1_type 4 189 0 270 0 0 0 chr6 13047528 13047558 -169367684 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1953 115 4 11 chr6 13047564 13047843 -169367399 - AluSq SINE Alu -36 277 1 200 291 48 87 chr6 13048907 13049010 -169366232 - L2 LINE L2 -35 3237 3139 1780 167 35 0 chr6 13049060 13049347 -169365895 + AluJo SINE Alu 1 297 -15 2116 121 7 0 chr6 13049355 13049660 -169365582 + AluSp SINE Alu 1 307 -6 453 338 27 34 chr6 13049815 13050111 -169365131 + HAL1 LINE L1 826 1119 -1388 300 299 41 41 chr6 13050332 13050479 -169364763 + HAL1 LINE L1 2328 2474 -33 1876 172 61 50 chr6 13051842 13052302 -169362940 + MLT1C LTR MaLR 3 467 0 350 325 7 7 chr6 13052579 13052733 -169362509 - L1ME LINE L1 -420 5701 5548 911 168 22 16 chr6 13052785 13052970 -169362272 + L1MA9 LINE L1 6125 6310 -2 222 333 123 9 chr6 13053188 13053302 -169361940 + MIR SINE MIR 120 246 -16 389 251 35 88 chr6 13053555 13053701 -169361541 + MIR SINE MIR 51 188 -74 2058 231 63 19 chr6 13053701 13054242 -169361000 - MLT1F1 LTR MaLR -2 565 1 389 251 35 88 chr6 13054242 13054266 -169360976 + MIR SINE MIR 188 212 -50 354 309 66 49 chr6 13054966 13055393 -169359849 + L1M4 LINE L1 4668 5101 -1045 303 289 18 78 chr6 13055501 13055657 -169359585 - MIR SINE MIR -12 250 105 505 259 17 0 chr6 13055657 13055773 -169359469 + MER5B DNA MER1_type 2 119 -59 195 189 27 0 chr6 13055781 13055818 -169359424 - MIR SINE MIR -164 98 61 605 255 34 7 chr6 13056204 13056353 -169358889 + MIR SINE MIR 5 157 -105 1701 245 98 6 chr6 13056362 13056844 -169358398 - MLT1F LTR MaLR -16 526 1 1391 188 4 8 chr6 13056880 13057120 -169358122 - MER8 DNA MER2_type 0 239 1 325 247 21 62 chr6 13057226 13057323 -169357919 + MER5B DNA MER1_type 83 175 -3 803 202 11 22 chr6 13057379 13057557 -169357685 + MER5B DNA MER1_type 2 177 -1 192 77 0 0 chr6 13059964 13059990 -169355252 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 234 299 0 72 chr6 13060633 13060730 -169354512 - L2 LINE L2 0 3313 3224 203 255 0 20 chr6 13061724 13061775 -169353467 - MIR SINE MIR -114 148 99 253 220 0 0 chr6 13061941 13061991 -169353251 - MIR SINE MIR -74 188 139 615 206 171 0 chr6 13062645 13062791 -169352451 + MER5A DNA MER1_type 13 183 -6 2058 121 0 17 chr6 13063342 13063639 -169351603 - AluSx SINE Alu -20 292 1 243 213 12 38 chr6 13063938 13064018 -169351224 + (TG)n Simple_repeat Simple_repeat 2 79 0 216 0 0 0 chr6 13064133 13064157 -169351085 + (TG)n Simple_repeat Simple_repeat 1 24 0 267 211 21 63 chr6 13064225 13064320 -169350922 + (TG)n Simple_repeat Simple_repeat 2 92 0 1072 301 43 10 chr6 13064494 13064892 -169350350 + L2 LINE L2 2378 2788 -526 717 256 110 18 chr6 13065085 13065304 -169349938 + MIR SINE MIR 3 241 -21 471 258 113 25 chr6 13065682 13065841 -169349401 + MIR SINE MIR 40 212 -50 247 346 86 25 chr6 13066267 13066429 -169348813 + L2 LINE L2 3098 3269 -3 952 123 0 19 chr6 13067274 13067428 -169347814 + L1PA14 LINE L1 6009 6159 -2 4019 101 10 2 chr6 13067935 13068519 -169346723 + L1PA13 LINE L1 5575 6163 0 2719 253 53 19 chr6 13068532 13070305 -169344937 - L1MEc LINE L1 -3101 3114 1331 370 318 15 45 chr6 13070522 13070654 -169344588 - L2 LINE L2 -1 3271 3144 1628 190 31 34 chr6 13072622 13073007 -169342235 - MLT1B LTR MaLR 0 390 7 184 254 102 0 chr6 13073328 13073387 -169341855 + MIR SINE MIR 90 154 -108 220 376 24 0 chr6 13073840 13073925 -169341317 + MIR3 SINE MIR 111 197 -11 1295 171 15 11 chr6 13074715 13074978 -169340264 - L1MA6 LINE L1 0 6300 6037 303 364 21 30 chr6 13075201 13075437 -169339805 + L2 LINE L2 2629 2862 -452 1504 229 51 20 chr6 13076104 13076553 -169338689 + MLT1C LTR MaLR 1 463 -4 2339 90 0 23 chr6 13076805 13077115 -169338127 - AluSx SINE Alu -9 303 1 305 169 34 17 chr6 13078753 13078812 -169336430 + L3 LINE CR1 433 492 -1085 447 365 79 16 chr6 13078836 13079140 -169336102 + L3 LINE CR1 985 1307 -270 402 290 126 28 chr6 13079159 13079343 -169335899 + MIR SINE MIR 4 204 -58 220 279 150 50 chr6 13079362 13079428 -169335814 + L3 LINE CR1 1317 1375 -202 2162 93 21 0 chr6 13079428 13079719 -169335523 + AluY SINE Alu 1 297 -14 220 279 150 50 chr6 13079719 13079792 -169335450 + L3 LINE CR1 1375 1470 -107 21 0 0 0 chr6 13080389 13080410 -169334832 + AT_rich Low_complexity Low_complexity 1 21 0 327 104 0 0 chr6 13081183 13081231 -169334011 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 232 261 23 85 chr6 13081391 13081516 -169333726 - MIR SINE MIR -89 119 6 * 514 348 108 32 chr6 13081480 13081980 -169333262 + L2 LINE L2 2030 2567 -747 198 0 0 0 chr6 13082840 13082862 -169332380 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1473 120 0 10 chr6 13082868 13083077 -169332165 - AluSg/x SINE Alu -21 289 83 2190 119 3 0 chr6 13083241 13083535 -169331707 + AluSc SINE Alu 1 295 -14 263 167 0 21 chr6 13083896 13083944 -169331298 + MIR SINE MIR 65 111 -151 261 255 43 152 chr6 13083967 13084198 -169331044 - L2 LINE L2 -6 3307 3102 1027 229 188 48 chr6 13084245 13084686 -169330556 + MLT1D LTR MaLR 3 505 0 218 343 46 28 chr6 13085338 13085446 -169329796 + L2 LINE L2 3158 3267 -5 1138 284 131 81 chr6 13085631 13086074 -169329168 - L2 LINE L2 0 3313 2893 2203 102 3 43 chr6 13086074 13086397 -169328845 + AluSq SINE Alu 1 310 -3 1138 284 131 81 chr6 13086397 13086893 -169328349 - L2 LINE L2 -420 2893 2423 2136 107 40 0 chr6 13086893 13087193 -169328049 + AluSx SINE Alu 1 312 0 1138 284 131 81 chr6 13087193 13087295 -169327947 - L2 LINE L2 -890 2423 2327 1337 203 123 42 chr6 13087295 13087724 -169327518 - MLT1C LTR MaLR -2 465 2 1138 284 131 81 chr6 13087724 13087926 -169327316 - L2 LINE L2 -986 2327 1978 21 0 0 0 chr6 13087929 13087950 -169327292 + AT_rich Low_complexity Low_complexity 1 21 0 453 304 27 70 chr6 13087973 13088302 -169326940 - L2 LINE L2 -1673 1641 1327 3845 60 31 52 chr6 13088302 13089361 -169325881 - MER11A LTR ERVK 0 1266 1 659 44 11 0 chr6 13089489 13089580 -169325662 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1497 173 82 57 chr6 13089594 13089947 -169325295 + MLT1A1 LTR MaLR 2 363 -2 596 87 11 0 chr6 13089953 13090045 -169325197 + (TAGA)n Simple_repeat Simple_repeat 1 93 0 2254 94 7 3 chr6 13090922 13091221 -169324021 - AluSg SINE Alu -10 300 1 272 196 0 0 chr6 13091398 13091444 -169323798 - L2 LINE L2 -12 3301 3256 203 130 22 22 chr6 13091633 13091679 -169323563 + (TTA)n Simple_repeat Simple_repeat 2 47 0 297 167 0 0 chr6 13091841 13091895 -169323347 + CT-rich Low_complexity Low_complexity 2 55 0 234 0 0 0 chr6 13091906 13091932 -169323310 + (CA)n Simple_repeat Simple_repeat 1 26 0 235 412 50 8 chr6 13094461 13094580 -169320662 + L2 LINE L2 3123 3246 -26 5813 112 25 4 chr6 13095700 13096645 -169318597 - L1MA5A LINE L1 -5 6292 5328 468 284 49 49 chr6 13096854 13097058 -169318184 - MER58C DNA MER1_type -1 214 11 220 208 19 0 chr6 13097090 13097143 -169318099 + (TG)n Simple_repeat Simple_repeat 1 54 0 1215 88 0 6 chr6 13097265 13097424 -169317818 + AluY SINE Alu 1 158 -153 215 258 15 15 chr6 13097489 13097555 -169317687 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2337 96 3 0 chr6 13097583 13097884 -169317358 - AluSq SINE Alu -11 302 1 28 0 0 0 chr6 13097885 13097913 -169317329 + AT_rich Low_complexity Low_complexity 1 28 0 269 325 0 4 chr6 13099196 13099298 -169315944 - MIR SINE MIR -66 142 47 296 305 78 14 chr6 13099500 13099641 -169315601 - MIR SINE MIR -74 188 39 1711 269 92 36 chr6 13099704 13100670 -169314572 + L2 LINE L2 2291 3313 0 273 206 260 0 chr6 13101139 13101212 -169314030 - MER63 DNA MER1_type -273 787 696 199 293 217 9 chr6 13101551 13101657 -169313585 + MIR SINE MIR 124 251 -11 23 0 0 0 chr6 13101905 13101928 -169313314 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr6 13101949 13101977 -169313265 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2604 46 0 3 chr6 13102217 13102524 -169312718 + AluY SINE Alu 1 306 -5 4585 153 37 2 chr6 13103703 13104576 -169310666 - L1MA8 LINE L1 -4 6287 5385 1898 131 44 7 chr6 13104629 13104926 -169310316 + AluSq SINE Alu 1 308 -5 1038 229 95 16 chr6 13104994 13105309 -169309933 + MER2 DNA MER2_type 5 344 0 432 306 61 11 chr6 13105577 13105757 -169309485 + MIR SINE MIR 20 208 -54 834 283 93 20 chr6 13105899 13106359 -169308883 + L2 LINE L2 2820 3313 0 180 0 0 0 chr6 13106400 13106420 -169308822 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 22 0 0 0 chr6 13107349 13107371 -169307871 + AT_rich Low_complexity Low_complexity 1 22 0 2260 85 0 0 chr6 13107888 13108193 -169307049 - AluSx SINE Alu 0 305 1 1642 179 41 10 chr6 13109419 13109709 -169305533 + AluJo SINE Alu 1 299 -13 2088 100 29 4 chr6 13109904 13110184 -169305058 + AluSq SINE Alu 11 297 -16 2115 65 0 0 chr6 13110566 13110814 -169304428 + AluY SINE Alu 35 324 0 231 71 0 24 chr6 13110814 13110856 -169304386 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1468 207 48 46 chr6 13110995 13111076 -169304166 - LTR40b LTR ERVL 0 462 383 2034 160 56 47 chr6 13111076 13111502 -169303740 - MSTB1 LTR MaLR 0 432 3 1468 207 48 46 chr6 13111502 13111855 -169303387 - LTR40b LTR ERVL -79 383 27 223 102 17 51 chr6 13112039 13112098 -169303144 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 1039 285 8 0 chr6 13113016 13113258 -169301984 + MIR SINE MIR 19 262 0 2395 103 0 0 chr6 13113343 13113645 -169301597 + AluSx SINE Alu 1 302 -10 309 192 0 0 chr6 13113668 13113720 -169301522 + L2 LINE L2 3258 3309 -4 1900 134 66 27 chr6 13114762 13115149 -169300093 + MLT1B LTR MaLR 1 390 0 255 256 61 24 chr6 13115277 13115359 -169299883 + MIR SINE MIR 60 144 -118 387 0 0 0 chr6 13116243 13116286 -169298956 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 759 159 0 0 chr6 13116286 13116399 -169298843 - FRAM SINE Alu -32 144 32 262 382 73 33 chr6 13117037 13117338 -169297904 - L2 LINE L2 -529 2785 2473 185 331 34 54 chr6 13117923 13118071 -169297171 + MIR3 SINE MIR 1 145 -63 27 0 0 0 chr6 13118940 13118967 -169296275 + AT_rich Low_complexity Low_complexity 1 27 0 205 196 0 22 chr6 13121683 13121729 -169293513 + CT-rich Low_complexity Low_complexity 3 47 0 269 160 0 0 chr6 13122468 13122518 -169292724 - MLT1K LTR MaLR -16 572 523 436 326 103 21 chr6 13122630 13122863 -169292379 - MLT1K LTR MaLR -241 347 96 327 191 0 0 chr6 13123514 13123582 -169291660 + GA-rich Low_complexity Low_complexity 3 70 0 232 287 22 42 chr6 13124125 13124246 -169290996 - MIR SINE MIR -33 175 53 2170 107 0 0 chr6 13126888 13127210 -169288032 - AluY SINE Alu 0 311 1 528 258 98 37 chr6 13127543 13127713 -169287529 - L1ME4a LINE L1 -204 5917 5759 2116 103 0 0 chr6 13127713 13127986 -169287256 - AluSq SINE Alu 0 313 41 528 258 98 37 chr6 13127986 13128191 -169287051 - L1ME4a LINE L1 -362 5759 5519 192 77 0 0 chr6 13128606 13128632 -169286610 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 15256 181 36 35 chr6 13128881 13130746 -169284496 + L1PA13 LINE L1 14 1876 -4938 2265 118 0 3 chr6 13130746 13131051 -169284191 + AluSx SINE Alu 1 304 -8 15256 181 36 35 chr6 13131051 13132222 -169283020 + L1PA13 LINE L1 1876 3044 -3770 619 134 179 0 chr6 13132222 13132334 -169282908 + AluY SINE Alu 1 132 -179 15256 181 36 35 chr6 13132334 13132351 -169282891 + L1PA13 LINE L1 3044 3059 -3755 207 0 0 0 chr6 13132351 13132374 -169282868 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 243 0 0 0 chr6 13132373 13132400 -169282842 + (GA)n Simple_repeat Simple_repeat 2 28 0 15256 181 36 35 chr6 13132374 13135995 -169279247 + L1PA13 LINE L1 3059 6814 0 24 53 0 0 chr6 13136017 13136055 -169279187 + AT_rich Low_complexity Low_complexity 1 38 0 4987 136 48 14 chr6 13136482 13138113 -169277129 + L1PA16 LINE L1 4518 6166 0 1111 279 11 63 chr6 13138134 13138579 -169276663 + L2 LINE L2 2892 3313 0 1960 119 0 11 chr6 13138754 13139069 -169276173 - AluSx SINE Alu 0 314 3 447 278 149 26 chr6 13139093 13139287 -169275955 + MIR SINE MIR 37 254 -8 386 324 7 7 chr6 13139628 13139767 -169275475 - MIR SINE MIR -110 152 14 312 133 0 33 chr6 13143856 13143916 -169271326 + THE1C LTR MaLR 1 58 -317 259 200 0 0 chr6 13143921 13143976 -169271266 + THE1C LTR MaLR 10 64 -311 2031 144 17 17 chr6 13143977 13144330 -169270912 + THE1C LTR MaLR 23 375 0 306 0 0 0 chr6 13144804 13144838 -169270404 + (TG)n Simple_repeat Simple_repeat 2 35 0 3944 81 26 3 chr6 13144979 13145545 -169269697 - L1PA13 LINE L1 0 6163 5585 465 295 72 21 chr6 13145592 13145785 -169269457 + MIR SINE MIR 44 246 -16 4998 160 14 30 chr6 13146013 13147384 -169267858 + L1MA7 LINE L1 4762 6153 -138 2293 106 0 0 chr6 13147384 13147677 -169267565 + AluSc SINE Alu 1 293 -16 216 97 0 0 chr6 13147678 13147709 -169267533 + (CA)n Simple_repeat Simple_repeat 2 32 0 4998 160 14 30 chr6 13147709 13147884 -169267358 + L1MA7 LINE L1 6152 6291 0 540 45 0 0 chr6 13149180 13149247 -169265995 + (CA)n Simple_repeat Simple_repeat 1 67 0 1984 161 7 0 chr6 13150620 13150919 -169264323 + AluJb SINE Alu 3 303 -9 205 268 0 18 chr6 13151267 13151323 -169263919 + GA-rich Low_complexity Low_complexity 5 59 0 6715 93 19 8 chr6 13152484 13153510 -169261732 + L1MA1 LINE L1 5265 6302 0 23 0 0 0 chr6 13153510 13153533 -169261709 + AT_rich Low_complexity Low_complexity 1 23 0 1802 153 7 4 chr6 13153954 13154235 -169261007 + AluJo SINE Alu 1 282 -30 203 152 0 0 chr6 13154237 13154270 -169260972 + GA-rich Low_complexity Low_complexity 2 34 0 237 108 0 0 chr6 13154273 13154310 -169260932 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 184 266 127 13 chr6 13154530 13154609 -169260633 + L2 LINE L2 2442 2529 -785 29 60 0 0 chr6 13154921 13154971 -169260271 + AT_rich Low_complexity Low_complexity 1 50 0 420 303 118 56 chr6 13155038 13155395 -169259847 - L1MC4a LINE L1 -1719 6089 5711 722 167 8 0 chr6 13155405 13155525 -169259717 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr6 13155525 13155546 -169259696 + AT_rich Low_complexity Low_complexity 1 21 0 299 246 123 35 chr6 13155564 13155735 -169259507 - L1MC4a LINE L1 -458 5663 5478 2162 97 35 0 chr6 13156666 13156955 -169258287 - AluY SINE Alu -12 299 1 9900 195 11 6 chr6 13157039 13159329 -169255913 - L1PA15 LINE L1 0 6165 3871 192 40 0 0 chr6 13159329 13159354 -169255888 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9900 195 11 6 chr6 13159354 13159965 -169255277 - L1PA15 LINE L1 -2294 3871 3264 932 237 9 0 chr6 13160033 13160244 -169254998 - MER45C DNA AcHobo -740 213 1 344 286 53 8 chr6 13160248 13160381 -169254861 + MIR SINE MIR 84 222 -40 228 313 164 23 chr6 13160606 13160734 -169254508 - MER5A DNA MER1_type -1 188 43 * 259 293 53 13 chr6 13160675 13160750 -169254492 + MER5A DNA MER1_type 101 178 -11 321 237 40 0 chr6 13160807 13160883 -169254359 - MER2 DNA MER2_type 0 345 267 984 168 46 0 chr6 13160910 13161106 -169254136 - MER2 DNA MER2_type -137 208 4 1774 193 68 32 chr6 13161183 13161624 -169253618 + LTR2B LTR ERV1 34 490 0 238 250 13 13 chr6 13161632 13161708 -169253534 - L1MC4 LINE L1 -138 7904 7829 2299 101 3 0 chr6 13161729 13162027 -169253215 + AluSp SINE Alu 1 299 -14 2737 205 57 50 chr6 13162062 13163001 -169252241 - L1ME2 LINE L1 -11 6153 5222 198 0 0 0 chr6 13163001 13163023 -169252219 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2285 77 0 0 chr6 13163026 13163312 -169251930 - AluSx SINE Alu -26 286 1 2737 205 57 50 chr6 13163312 13163379 -169251863 - L1ME2 LINE L1 -943 5221 5136 730 240 18 18 chr6 13164684 13164855 -169250387 - MER5A DNA MER1_type 0 189 19 22 0 0 0 chr6 13166200 13166222 -169249020 + AT_rich Low_complexity Low_complexity 1 22 0 3522 151 108 1 chr6 13166227 13166924 -169248318 + L1MC2 LINE L1 5559 6329 -15 1855 144 45 14 chr6 13167627 13167919 -169247323 - AluSx SINE Alu -11 301 1 1001 220 0 19 chr6 13167956 13168170 -169247072 - AluJo SINE Alu -102 210 1 336 289 124 46 chr6 13170154 13170348 -169244894 + L3 LINE CR1 1363 1571 -6 21 0 0 0 chr6 13173180 13173201 -169242041 + AT_rich Low_complexity Low_complexity 1 21 0 1442 196 3 40 chr6 13173220 13173381 -169241861 - AluJo SINE Alu -18 294 129 216 0 0 0 chr6 13173381 13173405 -169241837 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2079 124 0 0 chr6 13173405 13173688 -169241554 - AluSx SINE Alu -29 283 1 1442 196 3 40 chr6 13173688 13173826 -169241416 - AluJo SINE Alu -181 131 5 250 270 0 0 chr6 13174880 13174943 -169240299 - L2 LINE L2 -7 3306 3244 375 238 99 10 chr6 13175648 13175749 -169239493 - MIR SINE MIR -67 195 86 861 253 35 0 chr6 13175939 13176137 -169239105 + MER58A DNA MER1_type 2 206 -18 335 273 68 23 chr6 13176663 13176839 -169238403 + L2 LINE L2 1602 1785 -1529 685 279 90 57 chr6 13177066 13177432 -169237810 + L2 LINE L2 1661 2038 -1276 262 276 11 46 chr6 13177438 13177525 -169237717 + L2 LINE L2 3225 3308 -5 6644 64 14 42 chr6 13177766 13178995 -169236247 - L1PA8A LINE L1 0 6131 4921 323 91 0 0 chr6 13180318 13180362 -169234880 - AluSp/q SINE Alu -100 203 160 509 290 111 17 chr6 13181318 13181523 -169233719 - MIR SINE MIR -2 260 42 395 251 22 93 chr6 13183568 13183656 -169231586 - MIR3 SINE MIR -3 205 135 1953 104 107 4 chr6 13183656 13183936 -169231306 + AluSc SINE Alu 1 309 0 395 251 22 93 chr6 13183936 13184030 -169231212 - MIR3 SINE MIR -73 135 36 * 528 246 9 0 chr6 13184026 13184136 -169231106 + L2 LINE L2 3203 3313 0 42259 36 3 4 chr6 13184756 13190911 -169224331 + L1PA3 LINE L1 9 6155 0 2652 152 2 5 chr6 13191666 13192095 -169223147 + MSTA LTR MaLR 1 428 0 859 194 27 27 chr6 13192097 13192283 -169222959 - MER5A DNA MER1_type 0 189 4 183 226 0 75 chr6 13193138 13193191 -169222051 - L2 LINE L2 0 3313 3265 1100 198 18 14 chr6 13193708 13193925 -169221317 - MER20 DNA MER1_type 0 219 2 21 0 0 0 chr6 13194399 13194420 -169220822 + AT_rich Low_complexity Low_complexity 1 21 0 227 272 19 0 chr6 13194605 13194708 -169220534 - L1MC4a LINE L1 -1800 6008 5904 284 250 0 0 chr6 13194716 13194788 -169220454 - L1MC4a LINE L1 -2072 5736 5665 650 234 5 71 chr6 13194824 13195008 -169220234 - FAM SINE Alu -3 172 1 364 135 40 0 chr6 13195116 13195190 -169220052 - L1MB2 LINE L1 -16 6155 6079 16266 151 30 37 chr6 13195204 13198033 -169217209 + L1PB1 LINE L1 1 2848 -4019 2166 124 10 3 chr6 13198033 13198339 -169216903 + AluSg SINE Alu 1 308 -2 16266 151 30 37 chr6 13198339 13200692 -169214550 + L1PB1 LINE L1 2848 5131 -1736 353 43 43 14 chr6 13200692 13200761 -169214481 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 16266 151 30 37 chr6 13200761 13202480 -169212762 + L1PB1 LINE L1 5131 6860 -7 2392 201 45 11 chr6 13202488 13203046 -169212196 - L1MB2 LINE L1 -79 6092 5516 228 299 26 0 chr6 13204238 13204315 -169210927 + L1MEd LINE L1 445 523 -5596 193 295 137 11 chr6 13204668 13204763 -169210479 - MIR SINE MIR -70 192 86 2234 107 17 0 chr6 13205039 13205337 -169209905 + AluSq SINE Alu 3 305 -8 320 275 21 42 chr6 13205437 13205579 -169209663 - L2 LINE L2 -67 3246 3108 451 283 113 32 chr6 13205584 13205895 -169209347 + L1M4 LINE L1 2933 3268 -2878 744 230 27 59 chr6 13206119 13206341 -169208901 - MER58C DNA MER1_type 0 215 1 1187 260 22 32 chr6 13206394 13206805 -169208437 + HAL1 LINE L1 1717 2123 -384 1711 177 10 10 chr6 13206898 13207209 -169208033 + AluJb SINE Alu 2 312 0 22 35 0 0 chr6 13207209 13207238 -169208004 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr6 13208152 13208177 -169207065 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr6 13208643 13208681 -169206561 + AT_rich Low_complexity Low_complexity 1 38 0 296 298 9 0 chr6 13210069 13210183 -169205059 - MER103 DNA DNA -19 147 33 621 334 123 41 chr6 13210780 13211580 -169203662 + L2 LINE L2 1621 2485 -829 1727 146 16 33 chr6 13211795 13212159 -169203083 + Charlie1 DNA MER1_type 2328 2689 -72 207 278 12 118 chr6 13263790 13263959 -169151283 + MIR3 SINE MIR 37 187 -21 3544 106 32 4 chr6 13263998 13264535 -169150707 + MER41A LTR ERV1 3 554 0 200 328 74 70 chr6 13264647 13264794 -169150448 - MIR SINE MIR 0 262 112 2469 70 0 7 chr6 13264794 13265095 -169150147 - AluSx SINE Alu -13 299 1 200 328 74 70 chr6 13265095 13265191 -169150051 - MIR SINE MIR -150 112 18 661 216 0 0 chr6 13265601 13265717 -169149525 + FLAM_A SINE Alu 1 116 -17 544 262 124 31 chr6 13265739 13266289 -169148953 + L1ME3A LINE L1 2961 3561 -2585 271 286 50 0 chr6 13266293 13266412 -169148830 + L1ME3A LINE L1 3586 3710 -2436 525 307 53 59 chr6 13266414 13266805 -169148437 + L1ME3A LINE L1 3852 4244 -1902 1715 167 18 4 chr6 13266805 13267086 -169148156 - AluJo SINE Alu -27 285 1 525 307 53 59 chr6 13267086 13267762 -169147480 + L1ME3A LINE L1 4244 4913 -1233 626 216 49 56 chr6 13268041 13268347 -169146895 + L1ME3A LINE L1 5264 5567 -603 1637 152 7 55 chr6 13268347 13268493 -169146749 + AluJb SINE Alu 1 126 -186 2571 49 3 0 chr6 13268493 13268798 -169146444 + AluY SINE Alu 1 306 -5 1637 152 7 55 chr6 13268798 13268960 -169146282 + AluJb SINE Alu 126 294 -18 245 320 12 12 chr6 13268973 13269145 -169146097 + L1ME3A LINE L1 5785 5956 -214 2489 57 3 7 chr6 13269347 13269647 -169145595 - AluY SINE Alu -12 299 1 853 124 0 0 chr6 13270726 13270855 -169144387 - L1MA1 LINE L1 0 6302 6174 3504 179 26 9 chr6 13271220 13271919 -169143323 - MER50 LTR ERV1 -23 711 1 259 189 19 0 chr6 13271919 13271972 -169143270 - MER94 DNA DNA -78 56 3 241 286 14 14 chr6 13274394 13274464 -169140778 - L2 LINE L2 -14 3258 3189 193 352 40 40 chr6 13274674 13274799 -169140443 + L2 LINE L2 1342 1466 -1848 301 300 121 63 chr6 13275053 13275400 -169139842 + L2 LINE L2 1828 2194 -1120 631 303 46 26 chr6 13275413 13275720 -169139522 + L2 LINE L2 2475 2787 -527 184 350 82 0 chr6 13277085 13277182 -169138060 + MIR SINE MIR 76 180 -82 1507 279 78 42 chr6 13277272 13277368 -169137874 - L2 LINE L2 0 3313 3222 1242 121 0 0 chr6 13277368 13277542 -169137700 + L1PA16 LINE L1 5979 6152 -14 1507 279 78 42 chr6 13277542 13278320 -169136922 - L2 LINE L2 -91 3222 2411 201 226 77 29 chr6 13278588 13278658 -169136584 - MIR SINE MIR -63 145 79 221 300 54 39 chr6 13279599 13279729 -169135513 + MIR3 SINE MIR 4 135 -73 330 26 0 0 chr6 13280142 13280181 -169135061 + (CA)n Simple_repeat Simple_repeat 2 40 0 570 270 115 40 chr6 13280369 13280569 -169134673 + MIR SINE MIR 48 262 0 180 209 47 0 chr6 13281080 13281123 -169134119 - L2 LINE L2 -15 3257 3213 26 0 0 0 chr6 13281626 13281652 -169133590 + AT_rich Low_complexity Low_complexity 1 26 0 290 217 19 28 chr6 13282237 13282343 -169132899 + T-rich Low_complexity Low_complexity 1 105 0 249 57 0 0 chr6 13284878 13284913 -169130329 + (CA)n Simple_repeat Simple_repeat 2 36 0 1495 168 58 45 chr6 13285098 13285390 -169129852 - AluJo SINE Alu -16 296 1 224 251 99 89 chr6 13286422 13286613 -169128629 + MIR SINE MIR 14 206 -56 2323 236 71 24 chr6 13287519 13287863 -169127379 + L1ME2 LINE L1 5069 5396 -768 2014 145 0 0 chr6 13287863 13288159 -169127083 - AluJb SINE Alu -16 296 1 2323 236 71 24 chr6 13288159 13288796 -169126446 + L1ME2 LINE L1 5396 6100 -64 936 300 53 34 chr6 13288810 13289336 -169125906 + L1ME LINE L1 7 542 -5528 974 259 44 33 chr6 13289340 13289959 -169125283 + L1ME LINE L1 589 1192 -4888 234 227 13 13 chr6 13289955 13290030 -169125212 + L1MC5 LINE L1 7843 7917 -44 * 2144 111 11 0 chr6 13291972 13292293 -169122949 + AluSx SINE Alu 1 324 0 590 322 74 41 chr6 13292532 13293072 -169122170 + HAL1 LINE L1 154 711 -1796 526 239 111 86 chr6 13293181 13293379 -169121863 - MLT1J1 LTR MaLR -135 311 105 2427 93 0 13 chr6 13293379 13293691 -169121551 - AluSx SINE Alu -4 308 1 526 239 111 86 chr6 13293691 13293726 -169121516 - MLT1J1 LTR MaLR -341 105 72 262 261 94 11 chr6 13293872 13294052 -169121190 + HAL1 LINE L1 1003 1197 -1310 932 264 64 55 chr6 13294075 13294289 -169120953 + HAL1 LINE L1 1506 1716 -791 2759 26 0 0 chr6 13294289 13294602 -169120640 + AluYb8 SINE Alu 1 313 -5 932 264 64 55 chr6 13294602 13294898 -169120344 + HAL1 LINE L1 1716 2026 -481 843 131 6 86 chr6 13294898 13294943 -169120299 + L1PB2 LINE L1 5991 6038 -113 2001 108 15 0 chr6 13294943 13295212 -169120030 + AluSg SINE Alu 22 294 -16 843 131 6 86 chr6 13295212 13295341 -169119901 + L1PB2 LINE L1 6038 6151 0 932 264 64 55 chr6 13295341 13295451 -169119791 + HAL1 LINE L1 2026 2133 -374 1127 286 94 24 chr6 13295481 13295949 -169119293 - MLT1E LTR MaLR -92 501 1 401 222 57 57 chr6 13296036 13296212 -169119030 + HAL1 LINE L1 2225 2400 -107 31 26 0 0 chr6 13296258 13296296 -169118946 + AT_rich Low_complexity Low_complexity 1 38 0 1024 149 0 24 chr6 13296355 13296523 -169118719 + AluSg/x SINE Alu 122 285 -27 311 233 113 75 chr6 13297448 13297581 -169117661 - MIR SINE MIR -55 153 16 25 0 0 0 chr6 13297633 13297658 -169117584 + AT_rich Low_complexity Low_complexity 1 25 0 2418 170 15 37 chr6 13297677 13298212 -169117030 + L1MB8 LINE L1 5654 6176 -2 858 110 26 0 chr6 13298590 13298731 -169116511 - THE1C LTR MaLR 0 375 243 723 22 11 0 chr6 13298732 13298823 -169116419 - L1PA4 LINE L1 -199 5955 5864 1666 34 24 0 chr6 13298823 13299019 -169116223 + L1PA4 LINE L1 5942 6154 -1 811 131 91 107 chr6 13299024 13299276 -169115966 - THE1C LTR MaLR -127 248 1 254 278 0 0 chr6 13299290 13299344 -169115898 - L2 LINE L2 -16 3256 3203 319 329 7 7 chr6 13300589 13300729 -169114513 + (TA)n Simple_repeat Simple_repeat 1 140 0 734 265 22 0 chr6 13300852 13301037 -169114205 + MIR SINE MIR 70 258 -4 212 178 44 0 chr6 13301098 13301143 -169114099 + (TG)n Simple_repeat Simple_repeat 2 48 0 * 219 204 20 0 chr6 13301114 13301163 -169114079 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 0 0 0 chr6 13301335 13301363 -169113879 + (TA)n Simple_repeat Simple_repeat 1 28 0 2707 120 24 54 chr6 13301377 13301839 -169113403 + L1MA9 LINE L1 5789 6263 -49 1680 185 21 0 chr6 13301839 13302179 -169113063 + L1MA6 LINE L1 5950 6296 -4 2707 120 24 54 chr6 13302179 13302206 -169113036 + L1MA9 LINE L1 6263 6263 -49 2287 109 3 0 chr6 13302206 13302509 -169112733 - AluSc SINE Alu -5 304 1 2707 120 24 54 chr6 13302509 13302558 -169112684 + L1MA9 LINE L1 6263 6312 0 4101 137 19 11 chr6 13302691 13303385 -169111857 + L1PA16 LINE L1 5468 6166 0 351 262 24 0 chr6 13304426 13304510 -169110732 + MIR SINE MIR 64 149 -113 684 67 0 0 chr6 13305755 13305845 -169109397 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 643 180 117 0 chr6 13305845 13305973 -169109269 - FAM SINE Alu -31 154 12 2304 105 0 3 chr6 13306172 13306478 -169108764 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr6 13306478 13306499 -169108743 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 13307101 13307136 -169108106 + AT_rich Low_complexity Low_complexity 1 35 0 2062 127 0 0 chr6 13307267 13307584 -169107658 + AluSg SINE Alu 1 317 0 2062 147 0 19 chr6 13308548 13308861 -169106381 - AluJo SINE Alu -5 307 1 308 235 0 12 chr6 13309825 13309906 -169105336 + MER116 DNA Mariner 1 80 0 225 0 0 0 chr6 13310111 13310136 -169105106 + (A)n Simple_repeat Simple_repeat 1 25 0 11148 102 5 3 chr6 13310136 13312614 -169102628 - L1PA8A LINE L1 -27 6104 3620 704 202 38 11 chr6 13312865 13313048 -169102194 + MER53 DNA DNA 2 189 0 250 273 61 10 chr6 13313053 13313152 -169102090 - MER117 DNA MER1_type -91 106 3 24 85 0 0 chr6 13314401 13314460 -169100782 + AT_rich Low_complexity Low_complexity 1 59 0 551 291 45 17 chr6 13314611 13314790 -169100452 - MIR SINE MIR -51 211 28 391 293 87 41 chr6 13314790 13315182 -169100060 - L1ME4a LINE L1 -206 5915 5506 887 238 0 0 chr6 13316217 13316389 -169098853 + AluJb SINE Alu 115 286 -26 1595 50 0 0 chr6 13316657 13316856 -169098386 + L1PA7 LINE L1 5950 6148 -6 321 276 105 20 chr6 13317007 13317159 -169098083 + L1ME4a LINE L1 5956 6120 -1 2462 233 55 25 chr6 13317172 13318431 -169096811 - L1ME2 LINE L1 -7 6157 4857 2168 105 7 17 chr6 13318442 13318738 -169096504 + AluSc SINE Alu 1 293 -16 5083 75 3 1 chr6 13318827 13319496 -169095746 - L1PA7 LINE L1 -3 6151 5482 405 293 66 98 chr6 13319576 13319838 -169095404 + L3 LINE CR1 1250 1501 -76 8802 74 5 0 chr6 13319838 13321803 -169093439 + L1PA7 LINE L1 4199 6164 0 405 293 66 98 chr6 13321803 13321874 -169093368 + L3 LINE CR1 1501 1573 -4 26 0 0 0 chr6 13322389 13322415 -169092827 + AT_rich Low_complexity Low_complexity 1 26 0 636 283 72 45 chr6 13322535 13322772 -169092470 + MLT1H LTR MaLR 9 259 -290 2131 153 80 10 chr6 13322772 13323172 -169092070 + MSTA LTR MaLR 1 428 0 636 283 72 45 chr6 13323172 13323266 -169091976 + MLT1H LTR MaLR 259 349 -200 202 299 47 0 chr6 13324513 13324640 -169090602 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 21 0 0 0 chr6 13324736 13324757 -169090485 + AT_rich Low_complexity Low_complexity 1 21 0 1665 176 6 56 chr6 13324835 13325159 -169090083 - AluJb SINE Alu 0 312 5 242 326 51 25 chr6 13326308 13326504 -169088738 + L1MC4a LINE L1 5743 5943 -1865 457 268 49 19 chr6 13326574 13326904 -169088338 - L1MEd LINE L1 -4865 1254 1010 206 183 17 17 chr6 13327367 13327427 -169087815 + A-rich Low_complexity Low_complexity 4 63 0 562 293 12 35 chr6 13327958 13328217 -169087025 + HAL1 LINE L1 115 367 -2140 * 3663 159 58 25 chr6 13328209 13329015 -169086227 + L1MB7 LINE L1 5352 6184 0 713 80 10 0 chr6 13329024 13329124 -169086118 + L1PA7 LINE L1 6051 6151 -3 1279 266 51 27 chr6 13329167 13329679 -169085563 + HAL1 LINE L1 1356 1879 -628 291 130 0 0 chr6 13330059 13330113 -169085129 - Alu SINE Alu -2 300 247 924 149 0 14 chr6 13330113 13330261 -169084981 - AluJo SINE Alu -166 146 1 1680 141 6 74 chr6 13330329 13330641 -169084601 + AluJb SINE Alu 1 291 -21 198 0 0 0 chr6 13330641 13330663 -169084579 + (GA)n Simple_repeat Simple_repeat 2 23 0 397 181 21 0 chr6 13331361 13331455 -169083787 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 898 112 22 17 chr6 13331467 13331646 -169083596 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1965 239 26 24 chr6 13331720 13332260 -169082982 + MER77 LTR ERV1 58 598 -7 836 305 31 42 chr6 13332516 13333061 -169082181 + HAL1b LINE L1 434 972 -376 611 249 40 12 chr6 13333113 13333286 -169081956 - MIR SINE MIR -26 236 59 366 263 88 5 chr6 13333343 13333548 -169081694 + HAL1b LINE L1 1074 1295 -53 31 0 0 0 chr6 13333579 13333610 -169081632 + AT_rich Low_complexity Low_complexity 1 31 0 343 329 93 23 chr6 13333650 13333960 -169081282 + L1ME4a LINE L1 5784 6115 -6 342 280 19 9 chr6 13334358 13334465 -169080777 + MER5A DNA MER1_type 9 116 -73 30 83 0 0 chr6 13335032 13335104 -169080138 + AT_rich Low_complexity Low_complexity 1 72 0 192 232 89 0 chr6 13335447 13335503 -169079739 - MIR SINE MIR -114 148 88 302 218 73 73 chr6 13335685 13335809 -169079433 + L1ME2 LINE L1 5950 6073 -91 226 186 113 41 chr6 13335814 13335911 -169079331 + L1MC4 LINE L1 7924 8027 -15 27 62 0 0 chr6 13335920 13335968 -169079274 + AT_rich Low_complexity Low_complexity 1 48 0 2385 84 3 3 chr6 13336409 13336719 -169078523 - AluSx SINE Alu 0 312 3 2195 117 10 0 chr6 13337007 13337314 -169077928 + AluSx SINE Alu 1 310 -2 2236 86 7 0 chr6 13338110 13338414 -169076828 - AluSx SINE Alu -6 306 1 21 0 0 0 chr6 13339401 13339422 -169075820 + AT_rich Low_complexity Low_complexity 1 21 0 535 299 90 80 chr6 13339494 13339765 -169075477 + L1M4 LINE L1 2141 2408 -3738 2331 100 0 0 chr6 13339765 13340064 -169075178 + AluSg SINE Alu 1 299 -11 535 299 90 80 chr6 13340064 13340502 -169074740 + L1M4 LINE L1 2408 2857 -3289 248 163 73 49 chr6 13340613 13340736 -169074506 + Charlie7 DNA MER1_type 2420 2545 -67 1375 221 22 56 chr6 13340801 13341155 -169074087 - MLT1C LTR MaLR 0 467 130 2860 3 0 0 chr6 13341155 13341464 -169073778 - AluYa5 SINE Alu -2 309 1 1375 221 22 56 chr6 13341464 13341558 -169073684 - MLT1C LTR MaLR -337 130 34 186 103 0 0 chr6 13342879 13342908 -169072334 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 171 49 0 chr6 13342912 13342953 -169072289 - L2 LINE L2 -38 3234 3192 345 348 15 7 chr6 13343464 13343599 -169071643 + HAL1b LINE L1 454 589 -759 29 0 0 0 chr6 13344035 13344064 -169071178 + AT_rich Low_complexity Low_complexity 1 29 0 258 317 49 54 chr6 13344147 13344352 -169070890 + LTR67 LTR ERVL 114 317 -240 2735 73 98 5 chr6 13344355 13344765 -169070477 + LTR7 LTR ERV1 1 448 -2 16198 99 30 12 chr6 13344767 13347947 -169067295 + HERVH LTR ERV1 1 2987 -4726 822 142 20 0 chr6 13347941 13348089 -169067153 + HERVH LTR ERV1 3140 3290 -4423 * 3266 95 4 4 chr6 13348088 13348582 -169066660 + HERVH LTR ERV1 3500 3993 -3720 4326 125 0 1 chr6 13348584 13349247 -169065995 + HERVH LTR ERV1 4488 5149 -2564 1371 116 19 0 chr6 13349248 13349464 -169065778 + HERVH LTR ERV1 5600 5819 -1894 2268 93 48 13 chr6 13349464 13349841 -169065401 + HERVH LTR ERV1 7324 7713 0 1885 102 8 8 chr6 13349841 13350200 -169065042 + LTR7 LTR ERV1 1 448 -2 356 341 62 0 chr6 13351388 13351517 -169063725 - L2 LINE L2 -2 3270 3134 2195 117 0 19 chr6 13351688 13351996 -169063246 + AluSg SINE Alu 1 302 -8 222 137 59 0 chr6 13352011 13352062 -169063180 + A-rich Low_complexity Low_complexity 2 55 0 238 302 220 17 chr6 13352664 13353137 -169062105 - L2 LINE L2 -1018 2296 1728 2385 113 5 35 chr6 13353881 13354254 -169060988 + THE1B LTR MaLR 3 364 0 606 122 0 0 chr6 13354320 13354418 -169060824 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 1425 182 35 42 chr6 13354418 13354704 -169060538 - AluJo SINE Alu -28 284 1 2242 100 0 0 chr6 13355980 13356261 -169058981 + AluSx SINE Alu 5 288 -24 234 0 0 0 chr6 13356261 13356287 -169058955 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 637 130 0 37 chr6 13356589 13356697 -169058545 + FLAM_A SINE Alu 20 123 -19 847 209 13 0 chr6 13357094 13357279 -169057963 - AluJb SINE Alu 0 309 123 252 0 0 0 chr6 13357287 13357315 -169057927 + (TA)n Simple_repeat Simple_repeat 2 29 0 899 143 7 0 chr6 13357325 13357465 -169057777 - FLAM_C SINE Alu 0 143 3 359 276 176 19 chr6 13357730 13357991 -169057251 - L2 LINE L2 -731 2583 2282 318 132 0 0 chr6 13357994 13358047 -169057195 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 200 44 33 chr6 13358054 13358144 -169057098 + L1MC4 LINE L1 6613 6703 -1339 226 156 0 0 chr6 13358124 13358169 -169057073 - L1MC4 LINE L1 -1339 6703 6659 * 369 357 31 16 chr6 13358237 13358492 -169056750 - L2 LINE L2 -1063 2251 1993 1916 154 3 0 chr6 13359309 13359594 -169055648 + AluSx SINE Alu 1 286 -26 393 338 49 63 chr6 13359848 13360132 -169055110 + HAL1b LINE L1 63 342 -1006 873 136 21 29 chr6 13360741 13360881 -169054361 - FRAM SINE Alu -18 158 20 598 175 9 0 chr6 13360908 13361022 -169054220 - MER20 DNA MER1_type -48 171 57 2435 83 62 10 chr6 13361022 13361406 -169053836 + MLT2A1 LTR ERVL 1 404 -40 372 150 0 0 chr6 13361406 13361486 -169053756 + (TA)n Simple_repeat Simple_repeat 2 81 0 211 234 11 11 chr6 13361608 13361702 -169053540 + (TA)n Simple_repeat Simple_repeat 1 94 0 2152 98 4 0 chr6 13361723 13361997 -169053245 + AluSx SINE Alu 16 290 -22 230 271 10 52 chr6 13361997 13362093 -169053149 + L1MC5 LINE L1 6647 6738 -1223 2191 116 10 7 chr6 13362096 13362406 -169052836 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr6 13362415 13362442 -169052800 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1740 181 3 26 chr6 13362447 13362756 -169052486 + AluJo SINE Alu 3 304 -8 1818 220 55 80 chr6 13362757 13363571 -169051671 + L1MC5 LINE L1 6735 7528 -433 250 241 65 9 chr6 13363727 13363835 -169051407 + L1ME3A LINE L1 6027 6140 -30 995 194 0 0 chr6 13363838 13364018 -169051224 - AluJo SINE Alu -6 306 127 316 326 170 0 chr6 13364142 13364366 -169050876 - L2 LINE L2 -1414 1900 1639 2010 226 106 47 chr6 13364368 13365062 -169050180 + L1MC4 LINE L1 6935 7709 -333 3667 122 2 24 chr6 13365062 13365650 -169049592 + L1PA14 LINE L1 5578 6152 -9 2010 226 106 47 chr6 13365650 13366005 -169049237 + L1MC4 LINE L1 7709 8042 0 192 351 33 26 chr6 13366011 13366162 -169049080 - L2 LINE L2 -1692 1622 1471 401 47 0 31 chr6 13369039 13369103 -169046139 - L1PA7 LINE L1 0 6154 6093 300 53 0 0 chr6 13369129 13369167 -169046075 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 220 286 54 0 chr6 13370161 13370217 -169045025 - L2 LINE L2 0 3272 3214 271 321 15 30 chr6 13372664 13372798 -169042444 - L2 LINE L2 -954 2360 2229 690 243 18 72 chr6 13372806 13373051 -169042191 - MIR SINE MIR 0 262 30 254 290 129 32 chr6 13373239 13373394 -169041848 + MIR SINE MIR 82 251 -11 1301 206 83 31 chr6 13373710 13374036 -169041206 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr6 13374489 13374528 -169040714 + AT_rich Low_complexity Low_complexity 1 39 0 3748 29 9 0 chr6 13374553 13374996 -169040246 - L1PA3 LINE L1 0 6155 5709 2281 135 10 20 chr6 13375044 13375485 -169039757 + Tigger2 DNA MER2_type 3 2718 0 2282 109 0 0 chr6 13375859 13376161 -169039081 - AluY SINE Alu -9 302 1 25 31 0 0 chr6 13376289 13376321 -169038921 + AT_rich Low_complexity Low_complexity 1 32 0 578 265 12 18 chr6 13376373 13376539 -169038703 + MER5B DNA MER1_type 14 178 0 1095 199 5 24 chr6 13376669 13376880 -169038362 + AluJo SINE Alu 82 288 -24 22 80 0 0 chr6 13376880 13376930 -169038312 + AT_rich Low_complexity Low_complexity 1 50 0 341 164 87 39 chr6 13376931 13377035 -169038207 - MER5A DNA MER1_type -77 112 4 202 259 129 118 chr6 13377066 13377236 -169038006 - MER5B DNA MER1_type -3 175 4 283 337 89 11 chr6 13377798 13377988 -169037254 + L2 LINE L2 2184 2388 -926 188 386 79 35 chr6 13378083 13378285 -169036957 + L2 LINE L2 2814 3024 -248 246 226 0 0 chr6 13379783 13379836 -169035406 - MER116 DNA Mariner -27 53 1 23 0 0 0 chr6 13380091 13380114 -169035128 + AT_rich Low_complexity Low_complexity 1 23 0 4220 202 27 14 chr6 13380983 13382033 -169033209 + L1MB3 LINE L1 4125 5187 -959 1111 158 14 38 chr6 13382033 13382242 -169033000 + AluJb SINE Alu 108 311 -1 690 123 29 14 chr6 13382243 13382381 -169032861 + GA-rich Low_complexity Low_complexity 4 143 0 5030 120 52 8 chr6 13382387 13383337 -169031905 + L1PA16 LINE L1 5180 6165 -1 423 241 25 49 chr6 13383381 13383428 -169031814 - L1MA10 LINE L1 -7 6327 6281 2870 214 63 18 chr6 13383428 13384343 -169030899 - L1ME1 LINE L1 -44 6122 5173 1317 181 16 0 chr6 13384464 13384712 -169030530 + L1MB3 LINE L1 5447 5698 -473 488 184 10 0 chr6 13384712 13384796 -169030446 + L1MB3 LINE L1 6076 6179 -4 203 373 119 16 chr6 13384961 13385087 -169030155 + MIR3 SINE MIR 41 179 -29 302 285 93 14 chr6 13385325 13385465 -169029777 + MIR SINE MIR 71 220 -42 395 263 188 25 chr6 13385519 13385679 -169029563 - MER5A DNA MER1_type 0 189 4 190 329 13 13 chr6 13385849 13385925 -169029317 - MIR3 SINE MIR -52 156 81 254 287 102 9 chr6 13387735 13387843 -169027399 + L2 LINE L2 3191 3308 -5 860 159 0 45 chr6 13387944 13388101 -169027141 - FRAM SINE Alu -26 150 1 357 274 0 0 chr6 13388402 13388486 -169026756 - MIR SINE MIR -1 261 178 183 255 43 0 chr6 13388747 13388794 -169026448 - MIR SINE MIR -109 153 105 329 107 0 18 chr6 13389658 13389714 -169025528 + (GA)n Simple_repeat Simple_repeat 2 56 0 669 159 9 0 chr6 13390753 13390860 -169024382 + FLAM_C SINE Alu 11 118 -25 24 0 0 0 chr6 13391710 13391734 -169023508 + AT_rich Low_complexity Low_complexity 1 24 0 2245 126 3 3 chr6 13392184 13392494 -169022748 - AluSx SINE Alu -2 310 1 186 43 0 0 chr6 13392753 13392776 -169022466 + (TC)n Simple_repeat Simple_repeat 1 23 0 247 271 14 14 chr6 13397900 13397970 -169017272 + MER5A DNA MER1_type 85 154 -35 451 234 27 0 chr6 13398107 13398218 -169017024 + MIR SINE MIR 128 241 -21 2190 100 14 0 chr6 13398289 13398578 -169016664 + AluSx SINE Alu 1 293 -19 240 292 25 67 chr6 13400315 13400435 -169014807 + MER5A DNA MER1_type 73 187 -2 546 200 200 52 chr6 13400461 13400616 -169014626 + MER5A DNA MER1_type 9 186 -3 1585 159 32 28 chr6 13400669 13400952 -169014290 - AluJo SINE Alu -8 304 21 532 245 28 14 chr6 13400954 13401097 -169014145 + MER5B DNA MER1_type 34 178 0 2250 106 3 16 chr6 13401236 13401547 -169013695 + AluSx SINE Alu 6 312 0 343 369 58 15 chr6 13401550 13401756 -169013486 - MIR SINE MIR -28 234 20 180 209 0 75 chr6 13402566 13402633 -169012609 + L2 LINE L2 3003 3064 -208 406 358 31 0 chr6 13402696 13402858 -169012384 + MIR SINE MIR 58 224 -38 33 43 0 0 chr6 13403049 13403096 -169012146 + AT_rich Low_complexity Low_complexity 1 47 0 239 374 108 36 chr6 13403141 13403502 -169011740 + L3b LINE CR1 1148 1534 -49 222 122 41 20 chr6 13404199 13404248 -169010994 + T-rich Low_complexity Low_complexity 2 51 0 204 280 0 0 chr6 13404688 13404738 -169010504 + GA-rich Low_complexity Low_complexity 1 50 0 1782 171 7 23 chr6 13405215 13405525 -169009717 + AluJo SINE Alu 1 305 -7 26 0 0 0 chr6 13405600 13405626 -169009616 + AT_rich Low_complexity Low_complexity 1 26 0 608 285 21 21 chr6 13405667 13405853 -169009389 + MIR SINE MIR 6 191 -71 323 255 9 9 chr6 13406051 13406157 -169009085 - MER113 DNA MER1_type? -413 108 3 352 359 93 40 chr6 13406728 13407308 -169007934 - L2 LINE L2 -452 2862 2252 2609 84 24 16 chr6 13407791 13408172 -169007070 - L1PA13 LINE L1 -11 6152 5769 423 0 0 0 chr6 13408172 13408219 -169007023 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2275 86 0 0 chr6 13408219 13408499 -169006743 - AluSg SINE Alu -30 280 1 382 309 48 17 chr6 13408764 13408945 -169006297 - MIR SINE MIR -37 225 41 2632 77 0 0 chr6 13409538 13409875 -169005367 - L1PA8A LINE L1 -3 6128 5792 303 261 136 11 chr6 13410390 13410478 -169004764 - MIR3 SINE MIR -1 207 109 406 313 129 5 chr6 13410489 13410690 -169004552 - MIR SINE MIR -6 256 31 187 307 59 59 chr6 13410715 13410816 -169004426 - MIR SINE MIR -91 117 17 439 270 61 61 chr6 13411296 13411526 -169003716 - MIR SINE MIR -6 256 27 370 358 150 9 chr6 13411546 13411772 -169003470 - MIR SINE MIR -4 258 1 2235 212 79 8 chr6 13412135 13412639 -169002603 - MLT1F LTR MaLR -2 540 1 27 49 0 0 chr6 13413884 13413925 -169001317 + AT_rich Low_complexity Low_complexity 1 41 0 261 83 0 0 chr6 13413985 13414021 -169001221 + U2 snRNA snRNA 1 36 -152 240 111 0 0 chr6 13414173 13414209 -169001033 + (TA)n Simple_repeat Simple_repeat 1 36 0 1738 170 68 0 chr6 13414230 13414553 -169000689 - MER7A DNA MER2_type 0 346 4 234 91 0 0 chr6 13414584 13414617 -169000625 + (CA)n Simple_repeat Simple_repeat 2 34 0 1253 255 96 83 chr6 13414696 13414768 -169000474 - L1MC4 LINE L1 -121 7921 7851 1872 166 36 10 chr6 13414768 13415070 -169000172 - AluJo SINE Alu -2 310 1 1253 255 96 83 chr6 13415070 13415766 -168999476 - L1MC4 LINE L1 -191 7851 7135 2216 110 0 7 chr6 13415766 13416075 -168999167 + AluSq SINE Alu 1 307 -6 1253 255 96 83 chr6 13416075 13416298 -168998944 - L1MC4 LINE L1 -907 7135 6916 22 0 0 0 chr6 13416708 13416730 -168998512 + AT_rich Low_complexity Low_complexity 1 22 0 1503 178 14 21 chr6 13416730 13417016 -168998226 - AluJo SINE Alu -17 295 12 1284 244 135 34 chr6 13417030 13417903 -168997339 - L1ME2 LINE L1 0 6164 5176 680 283 57 30 chr6 13417938 13418379 -168996863 - L1ME2 LINE L1 -2748 3398 2946 * 1537 223 70 91 chr6 13418373 13419266 -168995976 - L1M4 LINE L1 -954 5192 4318 3373 125 11 4 chr6 13419291 13419836 -168995406 - MER41B LTR ERV1 -86 549 1 5463 118 29 27 chr6 13419836 13420766 -168994476 - MER41B-int LTR ERV1 -2 5944 5013 4105 32 4 0 chr6 13420766 13421289 -168993953 + L1P LINE L1 2411 2935 -3211 2769 80 10 0 chr6 13421289 13421675 -168993567 - MER41B-int LTR ERV1 -919 5027 4638 492 174 23 0 chr6 13421669 13421755 -168993487 - MER41B-int LTR ERV1 -5858 88 1 * 974 130 0 0 chr6 13421755 13421909 -168993333 - MER41B LTR ERV1 0 635 482 633 254 40 13 chr6 13421916 13422144 -168993098 - L1M4 LINE L1 -1823 4323 4090 406 274 14 41 chr6 13422149 13422295 -168992947 - MER5A DNA MER1_type -39 150 9 338 350 15 30 chr6 13422952 13423149 -168992093 - MIR3 SINE MIR -14 194 1 239 246 8 42 chr6 13423314 13423432 -168991810 + A-rich Low_complexity Low_complexity 5 118 0 1654 194 0 14 chr6 13423437 13423731 -168991511 + AluJb SINE Alu 1 290 -22 279 292 29 40 chr6 13424396 13424500 -168990742 + MIR SINE MIR 11 115 -93 206 264 0 19 chr6 13424500 13424553 -168990689 + CT-rich Low_complexity Low_complexity 3 54 0 1365 219 0 11 chr6 13424567 13424827 -168990415 + AluJo SINE Alu 1 257 -55 306 246 6 39 chr6 13426648 13426827 -168988415 + CT-rich Low_complexity Low_complexity 3 175 0 200 219 37 37 chr6 13426994 13427076 -168988166 + C-rich Low_complexity Low_complexity 2 83 0 551 185 19 12 chr6 13427608 13427770 -168987472 + GA-rich Low_complexity Low_complexity 2 164 0 203 188 21 0 chr6 13428162 13428210 -168987032 + (TG)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr6 13431129 13431157 -168984085 + (TA)n Simple_repeat Simple_repeat 2 29 0 2168 97 0 37 chr6 13431157 13431456 -168983786 - AluY SINE Alu -21 290 3 1916 149 46 0 chr6 13431861 13432190 -168983052 - MER2 DNA MER2_type 0 344 1 358 287 125 15 chr6 13432454 13432590 -168982652 + MIR3 SINE MIR 37 187 -21 21 57 0 0 chr6 13432779 13432814 -168982428 + AT_rich Low_complexity Low_complexity 1 35 0 1540 271 124 30 chr6 13434121 13435015 -168980227 - L2 LINE L2 -52 3261 2452 2037 135 3 3 chr6 13435015 13435312 -168979930 + AluSx SINE Alu 1 297 -15 1540 271 124 30 chr6 13435312 13435348 -168979894 - L2 LINE L2 -861 2452 2421 1931 114 3 74 chr6 13435348 13435672 -168979570 + AluSg SINE Alu 1 301 -9 1540 271 124 30 chr6 13435672 13435706 -168979536 - L2 LINE L2 -892 2421 2221 494 321 16 26 chr6 13435696 13435886 -168979356 - MIR SINE MIR -57 205 18 * 2234 120 3 3 chr6 13436026 13436334 -168978908 + AluSx SINE Alu 1 308 -4 281 230 74 37 chr6 13436342 13436477 -168978765 + MER112 DNA MER1_type 29 168 -92 734 213 133 8 chr6 13436738 13436978 -168978264 - ORSL DNA AcHobo -5 270 1 1215 247 0 0 chr6 13437024 13437259 -168977983 + MIR SINE MIR 7 241 -21 213 325 38 0 chr6 13437689 13437769 -168977473 + GA-rich Low_complexity Low_complexity 2 84 0 2171 120 0 0 chr6 13437836 13438135 -168977107 + AluSq SINE Alu 1 299 -14 192 40 0 0 chr6 13439385 13439410 -168975832 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2179 100 7 0 chr6 13440117 13440446 -168974796 + AluSp SINE Alu 1 331 0 37 23 0 0 chr6 13441079 13441123 -168974119 + AT_rich Low_complexity Low_complexity 1 44 0 391 324 0 0 chr6 13442532 13442643 -168972599 + L2 LINE L2 3162 3272 0 252 311 0 0 chr6 13443504 13443578 -168971664 - MIR3 SINE MIR -24 184 111 759 225 115 16 chr6 13443659 13443850 -168971392 - MER63A DNA MER1_type 0 210 1 2541 53 0 0 chr6 13445292 13445596 -168969646 - AluY SINE Alu -7 304 1 986 155 53 0 chr6 13445747 13445954 -168969288 - L1M2 LINE L1 -512 5779 5562 270 128 0 0 chr6 13445952 13445999 -168969243 + L1M2 LINE L1 5747 5793 -507 * 2573 145 66 32 chr6 13446122 13446161 -168969081 + L1MA6 LINE L1 5747 5783 -517 477 0 0 0 chr6 13446161 13446214 -168969028 + (CA)n Simple_repeat Simple_repeat 2 54 0 2573 145 66 32 chr6 13446214 13446706 -168968536 + L1MA6 LINE L1 5783 6296 -4 638 227 59 49 chr6 13446813 13447016 -168968226 + MIR SINE MIR 48 252 -10 310 336 79 55 chr6 13447585 13447877 -168967365 - L2 LINE L2 -11 3261 2963 236 346 19 26 chr6 13449362 13449518 -168965724 - L2 LINE L2 -1461 1853 1699 1978 119 0 27 chr6 13451732 13452051 -168963191 - AluSq SINE Alu 0 311 1 35 54 0 0 chr6 13452645 13452701 -168962541 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr6 13453220 13453254 -168961988 + AT_rich Low_complexity Low_complexity 1 34 0 329 391 0 0 chr6 13453255 13453370 -168961872 - L2 LINE L2 -5 3267 3153 189 0 0 0 chr6 13454573 13454594 -168960648 + (TA)n Simple_repeat Simple_repeat 1 21 0 2489 116 25 27 chr6 13454594 13454971 -168960271 - L1PA15 LINE L1 -7 6158 5781 2407 106 0 0 chr6 13454971 13455283 -168959959 - AluSx SINE Alu 0 312 1 2489 116 25 27 chr6 13455283 13455311 -168959931 - L1PA15 LINE L1 -384 5781 5754 761 236 39 6 chr6 13456192 13456374 -168958868 - MER91A DNA MER1_type 0 196 9 2407 78 3 0 chr6 13456405 13456699 -168958543 + AluSp SINE Alu 1 295 -18 243 0 0 0 chr6 13456879 13456906 -168958336 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 351 0 0 0 chr6 13457601 13457640 -168957602 + (TG)n Simple_repeat Simple_repeat 2 40 0 484 162 11 50 chr6 13461317 13461496 -168953746 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 581 153 0 53 chr6 13461521 13461710 -168953532 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 593 191 29 6 chr6 13461763 13461936 -168953306 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 273 211 15 30 chr6 13461925 13462058 -168953184 + (TA)n Simple_repeat Simple_repeat 1 131 0 * 194 0 0 37 chr6 13462060 13462087 -168953155 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2136 85 22 0 chr6 13462089 13462360 -168952882 - AluSp SINE Alu -36 277 1 315 284 0 32 chr6 13462372 13462467 -168952775 - L1MC4 LINE L1 -1339 6703 6612 193 267 22 0 chr6 13464452 13464497 -168950745 - MIR3 SINE MIR -11 197 152 2045 122 0 10 chr6 13465226 13465529 -168949713 + AluSx SINE Alu 1 300 -12 2647 277 103 39 chr6 13466432 13467130 -168948112 + L2 LINE L2 1809 2461 -852 1286 45 0 0 chr6 13467130 13467284 -168947958 - L1PA3 LINE L1 -3 6152 5999 2647 277 103 39 chr6 13467284 13467992 -168947250 + L2 LINE L2 2461 3312 -1 225 296 111 0 chr6 13468372 13468453 -168946789 - L2 LINE L2 -6 3266 3177 231 331 94 31 chr6 13468961 13469121 -168946121 + MIR SINE MIR 90 259 -3 * 592 331 97 21 chr6 13469112 13469402 -168945840 - L2 LINE L2 -1 3312 3001 307 239 0 68 chr6 13469402 13469490 -168945752 + L1MC4 LINE L1 6611 6692 -1350 2574 68 3 0 chr6 13469534 13469845 -168945397 + AluSp SINE Alu 1 312 -1 213 363 0 0 chr6 13471267 13471347 -168943895 - L2 LINE L2 -5 3267 3188 366 324 0 10 chr6 13471353 13471455 -168943787 + MIR SINE MIR 22 122 -140 1163 201 49 49 chr6 13471823 13472147 -168943095 - MER33 DNA MER1_type 0 324 1 589 204 134 22 chr6 13472360 13472519 -168942723 - MER5A DNA MER1_type -6 183 4 489 281 0 16 chr6 13474227 13474355 -168940887 - MIR SINE MIR -108 154 29 297 0 0 0 chr6 13474360 13474393 -168940849 + (TG)n Simple_repeat Simple_repeat 1 33 0 1053 273 78 80 chr6 13475047 13475391 -168939851 + L2 LINE L2 2851 3195 -118 270 0 0 0 chr6 13475391 13475421 -168939821 + (CA)n Simple_repeat Simple_repeat 2 31 0 1053 273 78 80 chr6 13475421 13475538 -168939704 + L2 LINE L2 3195 3311 -2 210 98 59 20 chr6 13475539 13475590 -168939652 + GA-rich Low_complexity Low_complexity 1 53 0 1774 165 3 13 chr6 13477955 13478264 -168936978 + AluJb SINE Alu 1 306 -6 248 208 0 0 chr6 13478986 13479034 -168936208 - MIR3 SINE MIR -6 202 155 201 167 17 33 chr6 13479433 13479493 -168935749 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 539 191 33 82 chr6 13479904 13480087 -168935155 - MER104 DNA MER2_type -3 177 4 981 171 15 29 chr6 13481026 13481231 -168934011 - MER20 DNA MER1_type -1 218 17 22 0 0 0 chr6 13481873 13481895 -168933347 + AT_rich Low_complexity Low_complexity 1 22 0 1599 148 110 0 chr6 13481897 13482161 -168933081 + AluJb SINE Alu 1 293 -19 2115 141 3 0 chr6 13482916 13483252 -168931990 - AluSx SINE Alu 0 337 1 658 164 17 0 chr6 13483850 13483966 -168931276 - FLAM_A SINE Alu -15 118 1 182 364 0 0 chr6 13484544 13484599 -168930643 + L2 LINE L2 3256 3310 -3 23 0 0 0 chr6 13484680 13484703 -168930539 + AT_rich Low_complexity Low_complexity 1 23 0 591 208 0 0 chr6 13486095 13486225 -168929017 + CT-rich Low_complexity Low_complexity 3 132 0 1603 159 0 54 chr6 13486243 13486539 -168928703 - AluJb SINE Alu -32 280 1 469 258 32 7 chr6 13486712 13486867 -168928375 - MER117 DNA MER1_type -37 160 2 281 47 23 0 chr6 13487662 13487705 -168927537 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 351 204 23 68 chr6 13488800 13488932 -168926310 + L1ME3 LINE L1 6037 6162 0 1963 160 22 3 chr6 13489341 13489704 -168925538 - L1MB5 LINE L1 0 6174 5805 356 353 83 29 chr6 13489707 13489948 -168925294 - MIR SINE MIR -8 254 1 21 36 0 0 chr6 13490422 13490450 -168924792 + AT_rich Low_complexity Low_complexity 1 28 0 567 195 169 13 chr6 13491173 13491327 -168923915 + MER5A DNA MER1_type 9 186 -3 223 322 246 10 chr6 13491581 13491780 -168923462 + MIR SINE MIR 6 251 -11 191 211 0 0 chr6 13491747 13491785 -168923457 + L2 LINE L2 3264 3301 -12 * 295 306 64 46 chr6 13491826 13491999 -168923243 + MIR3 SINE MIR 20 195 -13 624 280 81 5 chr6 13494774 13494985 -168920257 + MIR SINE MIR 36 262 0 2435 74 0 0 chr6 13495176 13495474 -168919768 - AluY SINE Alu -13 298 1 722 246 200 43 chr6 13495504 13495928 -168919314 - MLT1H LTR MaLR 0 549 17 306 312 23 25 chr6 13496831 13496991 -168918251 + MIR SINE MIR 34 191 -65 2110 132 3 7 chr6 13497521 13497831 -168917411 - AluSc SINE Alu 0 309 1 216 200 0 36 chr6 13497902 13497957 -168917285 + CT-rich Low_complexity Low_complexity 5 57 0 2213 132 0 3 chr6 13498531 13498835 -168916407 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr6 13498835 13498856 -168916386 + (GA)n Simple_repeat Simple_repeat 2 22 0 239 302 148 13 chr6 13499056 13499205 -168916037 - MIR SINE MIR -18 244 76 602 272 28 22 chr6 13500476 13500656 -168914586 + MIR SINE MIR 65 245 -17 3561 143 2 0 chr6 13501306 13501832 -168913410 + MER1A DNA MER1_type 1 527 0 544 235 143 71 chr6 13502166 13502348 -168912894 + MIR SINE MIR 8 212 -50 1714 171 0 23 chr6 13502348 13502465 -168912777 + AluJo SINE Alu 1 119 -193 255 31 0 0 chr6 13502465 13502497 -168912745 + (CA)n Simple_repeat Simple_repeat 1 32 0 1714 171 0 23 chr6 13502497 13502683 -168912559 + AluJo SINE Alu 119 297 -15 544 235 143 71 chr6 13502683 13502738 -168912504 + MIR SINE MIR 212 262 0 261 0 0 0 chr6 13503253 13503282 -168911960 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 344 259 70 7 chr6 13505926 13506069 -168909173 + L1ME4a LINE L1 5968 6119 -2 1698 130 68 0 chr6 13506149 13506456 -168908786 + L1MA5 LINE L1 5973 6300 0 1980 116 7 10 chr6 13507024 13507317 -168907925 + AluSx SINE Alu 1 292 -20 995 109 0 27 chr6 13507327 13507510 -168907732 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 27 51 0 17 chr6 13507921 13507950 -168907292 + AT_rich Low_complexity Low_complexity 1 29 -29 2255 81 3 24 chr6 13507950 13508247 -168906995 - AluSq SINE Alu -22 291 1 27 51 0 17 chr6 13508247 13508276 -168906966 + AT_rich Low_complexity Low_complexity 29 58 0 597 150 0 0 chr6 13508277 13508377 -168906865 - L1PB4 LINE L1 -10 6146 6047 181 286 0 0 chr6 13508507 13508549 -168906693 + L2 LINE L2 3262 3303 -10 199 193 18 53 chr6 13509237 13509294 -168905948 - MIR3 SINE MIR -29 179 125 842 211 6 18 chr6 13509295 13509466 -168905776 + AluJo SINE Alu 121 289 -23 224 353 12 0 chr6 13510383 13510468 -168904774 + MIR SINE MIR 58 143 -65 2386 95 0 0 chr6 13510606 13510910 -168904332 - AluSx SINE Alu -8 304 1 384 328 109 30 chr6 13511194 13511596 -168903646 + L2 LINE L2 2874 3307 -6 243 292 54 46 chr6 13513063 13513193 -168902049 - MIR SINE MIR -85 177 47 28 48 0 0 chr6 13513296 13513338 -168901904 + AT_rich Low_complexity Low_complexity 1 42 0 3968 134 13 2 chr6 13513918 13514514 -168900728 + LTR26 LTR ERV1 1 603 0 297 274 122 12 chr6 13514992 13515156 -168900086 + MIR SINE MIR 56 237 -25 1314 190 123 3 chr6 13515160 13515444 -168899798 - MLT1E LTR MaLR 0 593 276 501 308 0 0 chr6 13515503 13515649 -168899593 - MLT1E LTR MaLR -438 155 10 180 77 0 0 chr6 13516279 13516305 -168898937 + (CTG)n Simple_repeat Simple_repeat 3 28 0 565 289 147 10 chr6 13516317 13516521 -168898721 - MIR SINE MIR -2 260 29 391 243 184 29 chr6 13518458 13518594 -168896648 - MIR SINE MIR -40 222 66 29 0 0 0 chr6 13519432 13519461 -168895781 + AT_rich Low_complexity Low_complexity 1 29 0 1704 160 13 35 chr6 13519883 13520196 -168895046 - AluJo SINE Alu -6 306 1 189 147 0 0 chr6 13520824 13520858 -168894384 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 271 313 72 15 chr6 13521265 13521364 -168893878 + MIR SINE MIR 16 119 -102 1591 202 0 31 chr6 13521464 13521786 -168893456 + AluJo SINE Alu 1 312 0 248 359 11 0 chr6 13521861 13521953 -168893289 - L2 LINE L2 -33 3280 3188 288 0 0 0 chr6 13523419 13523451 -168891791 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 181 289 0 39 chr6 13523539 13523591 -168891651 + L2 LINE L2 3211 3260 -12 1736 145 9 41 chr6 13524152 13524469 -168890773 - AluJb SINE Alu -4 308 2 180 111 0 0 chr6 13524638 13524665 -168890577 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 23 0 0 0 chr6 13525171 13525194 -168890048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 13527207 13527228 -168888014 + AT_rich Low_complexity Low_complexity 1 21 0 378 321 19 12 chr6 13527631 13527793 -168887449 - MER117 DNA MER1_type -33 164 2 1563 208 89 51 chr6 13527912 13528360 -168886882 - MLT1C LTR MaLR -1 466 2 2203 136 0 0 chr6 13529180 13529488 -168885754 - AluSx SINE Alu -4 308 1 345 312 89 25 chr6 13529770 13529927 -168885315 + MIR3 SINE MIR 11 177 -31 415 280 137 17 chr6 13530578 13530753 -168884489 - MER117 DNA MER1_type -1 196 1 2437 112 44 19 chr6 13530872 13531238 -168884004 - THE1C LTR MaLR 0 375 1 3528 129 18 9 chr6 13531913 13532566 -168882676 + L1PA16 LINE L1 5161 5819 -347 507 191 0 0 chr6 13532573 13532657 -168882585 + AluJ/FLAM SINE Alu 2 85 -227 872 203 0 0 chr6 13532657 13532805 -168882437 + AluJo/FRAM SINE Alu 135 282 -30 2050 160 8 22 chr6 13532813 13533170 -168882072 + L1PA16 LINE L1 5814 6165 -1 2329 92 0 13 chr6 13533594 13533909 -168881333 - AluY SINE Alu 0 311 1 2032 119 25 0 chr6 13534684 13534970 -168880272 + AluSc SINE Alu 2 294 -15 192 77 0 0 chr6 13535049 13535075 -168880167 + (TTG)n Simple_repeat Simple_repeat 2 27 0 180 346 26 13 chr6 13535221 13535299 -168879943 + MIR SINE MIR 30 108 -100 * 392 336 69 0 chr6 13535295 13535426 -168879816 - L2 LINE L2 -1 3271 3132 1468 164 4 16 chr6 13535868 13536118 -168879124 + AluJo SINE Alu 5 251 -61 350 42 21 0 chr6 13536151 13536199 -168879043 + (CA)n Simple_repeat Simple_repeat 2 50 0 6429 58 12 7 chr6 13537359 13538172 -168877070 - L1PA7 LINE L1 -5 6149 5333 246 304 0 0 chr6 13539213 13539331 -168875911 + (TA)n Simple_repeat Simple_repeat 1 118 0 295 248 105 0 chr6 13540281 13540386 -168874856 + MIR SINE MIR 31 146 -116 1483 198 103 21 chr6 13540516 13540855 -168874387 - MLT1A2 LTR MaLR -4 370 4 807 189 18 18 chr6 13541540 13541704 -168873538 - MER5A DNA MER1_type 0 189 26 2455 84 0 0 chr6 13541752 13542063 -168873179 + AluY SINE Alu 1 311 0 437 274 9 9 chr6 13542412 13542525 -168872717 - MER81 DNA DNA -1 113 1 249 83 0 0 chr6 13542811 13542847 -168872395 + (TG)n Simple_repeat Simple_repeat 2 37 0 314 301 49 21 chr6 13544756 13544899 -168870343 - MIR SINE MIR -26 236 90 2301 106 3 0 chr6 13545331 13545632 -168869610 + AluSc SINE Alu 1 302 -7 231 303 15 0 chr6 13547245 13547311 -168867931 - L2 LINE L2 -16 3256 3190 205 175 123 18 chr6 13547363 13547420 -168867822 + L2 LINE L2 3209 3271 -1 801 261 36 101 chr6 13548683 13549349 -168865893 - L1MC5 LINE L1 -339 7622 7000 189 74 0 0 chr6 13549384 13549411 -168865831 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 358 239 18 37 chr6 13549435 13549544 -168865698 - L1MD3 LINE L1 -1247 6748 6642 358 288 71 38 chr6 13549526 13549766 -168865476 + L1MC5 LINE L1 7678 7925 -36 183 100 0 0 chr6 13549788 13549818 -168865424 + (CA)n Simple_repeat Simple_repeat 1 30 0 542 139 0 10 chr6 13550260 13550361 -168864881 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 1720 168 10 26 chr6 13550361 13550670 -168864572 - AluJo SINE Alu -8 304 1 276 274 153 16 chr6 13550718 13550842 -168864400 - L2 LINE L2 -11 3302 3162 806 243 15 10 chr6 13551190 13551392 -168863850 + MER58A DNA MER1_type 19 221 -3 358 252 226 0 chr6 13551410 13551525 -168863717 - MER5A DNA MER1_type -3 186 46 210 71 0 0 chr6 13552385 13552413 -168862829 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 187 265 121 36 chr6 13552770 13552853 -168862389 - MIR SINE MIR -139 123 34 413 226 235 0 chr6 13553460 13553562 -168861680 - MER91A DNA MER1_type -1 195 70 569 239 4 148 chr6 13553596 13553826 -168861416 - MIR SINE MIR -10 252 56 2098 203 74 34 chr6 13554051 13554549 -168860693 - MLT2B1 LTR ERVL 0 520 3 198 337 35 23 chr6 13555434 13555520 -168859722 + L2 LINE L2 3186 3272 0 245 346 52 22 chr6 13555746 13555882 -168859360 - MIR3 SINE MIR -47 161 22 303 292 230 19 chr6 13557005 13557166 -168858076 - MIR SINE MIR -45 217 23 553 293 100 60 chr6 13557362 13557575 -168857667 - MIR SINE MIR -3 259 33 1593 159 12 93 chr6 13557575 13557909 -168857333 - AluJb SINE Alu -5 307 1 553 293 100 60 chr6 13557909 13557944 -168857298 - MIR SINE MIR -229 33 1 366 273 133 0 chr6 13558345 13558473 -168856769 + MIR SINE MIR 114 258 -4 389 256 364 0 chr6 13558835 13559085 -168856157 + L2 LINE L2 2942 3282 -31 207 328 137 27 chr6 13559163 13559425 -168855817 - L2 LINE L2 -1106 2208 1918 193 242 0 76 chr6 13560120 13560186 -168855056 + MIR SINE MIR 156 216 -46 1951 148 0 7 chr6 13560565 13560870 -168854372 - AluSx SINE Alu -9 303 1 541 223 0 22 chr6 13561270 13561454 -168853788 + (CA)n Simple_repeat Simple_repeat 1 180 0 339 239 0 0 chr6 13561458 13561529 -168853713 + (CATA)n Simple_repeat Simple_repeat 1 71 0 2307 91 0 3 chr6 13561758 13562056 -168853186 - AluY SINE Alu -14 297 1 204 40 0 0 chr6 13562100 13562125 -168853117 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 267 93 0 0 chr6 13562160 13562203 -168853039 + (CA)n Simple_repeat Simple_repeat 2 44 0 2113 114 3 19 chr6 13563168 13563484 -168851758 + AluSx SINE Alu 1 311 -1 367 274 34 33 chr6 13563789 13563980 -168851262 - MIR SINE MIR -48 214 26 284 127 18 0 chr6 13564357 13564412 -168850830 + CT-rich Low_complexity Low_complexity 3 58 0 372 230 70 10 chr6 13564976 13565076 -168850166 - L2 LINE L2 -9 3304 3199 1157 198 70 113 chr6 13565077 13565140 -168850102 + MSTD LTR MaLR 1 65 -331 2220 113 3 16 chr6 13565140 13565449 -168849793 + AluSx SINE Alu 1 305 -7 1157 198 70 113 chr6 13565449 13565799 -168849443 + MSTD LTR MaLR 65 396 0 21 36 0 0 chr6 13565864 13565892 -168849350 + AT_rich Low_complexity Low_complexity 1 28 0 392 273 154 26 chr6 13566054 13566341 -168848901 - MLT1I LTR MaLR -2 448 80 1576 171 20 13 chr6 13566344 13566642 -168848600 + AluJo SINE Alu 1 300 -12 442 136 0 23 chr6 13567079 13567167 -168848075 + (TTC)n Simple_repeat Simple_repeat 2 87 0 1048 280 46 52 chr6 13567264 13567332 -168847910 + L2 LINE L2 2562 2629 -684 2420 120 3 15 chr6 13567332 13567673 -168847569 + MER1B DNA MER1_type 1 337 0 1048 280 46 52 chr6 13567673 13568360 -168846882 + L2 LINE L2 2629 3307 -6 505 262 76 17 chr6 13569153 13569325 -168845917 + MIR SINE MIR 30 211 -51 193 323 219 10 chr6 13570453 13570645 -168844597 - MIR SINE MIR -14 248 17 2113 130 0 0 chr6 13571676 13571976 -168843266 + AluSx SINE Alu 1 300 -12 416 198 21 21 chr6 13572313 13572409 -168842833 + L2 LINE L2 3177 3272 0 2451 93 0 3 chr6 13572524 13572836 -168842406 - AluSq SINE Alu -2 311 1 458 290 80 0 chr6 13573087 13573249 -168841993 - MER5B DNA MER1_type -3 175 1 306 0 0 0 chr6 13575052 13575086 -168840156 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2456 87 0 3 chr6 13575086 13575407 -168839835 - L1PA7 LINE L1 -18 6136 5817 234 281 79 107 chr6 13576207 13576627 -168838615 + L2 LINE L2 2854 3261 -11 1571 155 0 20 chr6 13577803 13578055 -168837187 + AluJb SINE Alu 40 286 -26 289 282 14 0 chr6 13578748 13578819 -168836423 + GA-rich Low_complexity Low_complexity 4 75 0 2347 96 0 3 chr6 13578846 13579149 -168836093 - AluSx SINE Alu -10 302 1 944 148 35 79 chr6 13579260 13579489 -168835753 + MER20 DNA MER1_type 1 219 0 1947 159 0 0 chr6 13579494 13579789 -168835453 + AluSx SINE Alu 1 295 -17 711 271 67 4 chr6 13580416 13580656 -168834586 + MIR SINE MIR 8 262 0 2078 95 56 7 chr6 13581619 13581904 -168833338 + AluSq SINE Alu 1 299 -14 181 294 0 0 chr6 13582182 13582233 -168833009 + MIR SINE MIR 103 153 -109 532 249 55 12 chr6 13582400 13582565 -168832677 - MER5B DNA MER1_type -3 175 4 280 296 88 32 chr6 13582784 13582909 -168832333 - L2 LINE L2 -4 3268 3137 320 231 132 50 chr6 13583949 13584070 -168831172 - MLT1K LTR MaLR -97 491 361 281 300 111 67 chr6 13584148 13584328 -168830914 - MLT1K LTR MaLR -340 248 61 605 305 26 4 chr6 13585407 13585640 -168829602 - L3 LINE CR1 -145 1432 1195 226 316 21 11 chr6 13585893 13585988 -168829254 - L2 LINE L2 -192 3080 2985 255 149 0 43 chr6 13588102 13588149 -168827093 - MIR SINE MIR -116 146 102 2258 95 0 7 chr6 13589334 13589653 -168825589 - AluSx SINE Alu 0 317 1 1964 156 0 7 chr6 13590024 13590326 -168824916 + AluJb SINE Alu 1 300 -12 1937 105 9 93 chr6 13591313 13591647 -168823595 - AluSx SINE Alu -2 310 5 327 334 150 3 chr6 13591673 13592026 -168823216 + L2 LINE L2 2035 2439 -875 288 165 78 58 chr6 13592038 13592141 -168823101 - LTR41 LTR ERVL -15 758 654 594 221 138 28 chr6 13592548 13592577 -168822665 - LTR41 LTR ERVL -572 201 177 2197 131 0 3 chr6 13592577 13592889 -168822353 + AluSx SINE Alu 1 311 -1 594 221 138 28 chr6 13592889 13593040 -168822202 - LTR41 LTR ERVL -596 177 1 325 164 44 214 chr6 13593343 13593502 -168821740 + L1MC2 LINE L1 6205 6336 -8 368 325 128 47 chr6 13593677 13593975 -168821267 + L2 LINE L2 2951 3272 0 1503 189 18 18 chr6 13594824 13595104 -168820138 + AluJo SINE Alu 1 280 -32 21 0 0 0 chr6 13596332 13596353 -168818889 + AT_rich Low_complexity Low_complexity 1 21 0 839 111 0 0 chr6 13596365 13596473 -168818769 - AluJb SINE Alu -196 116 9 2382 100 0 0 chr6 13596494 13596794 -168818448 - AluSg SINE Alu -10 300 1 209 311 112 54 chr6 13597228 13597469 -168817773 + MIR SINE MIR 8 262 0 520 270 132 0 chr6 13598389 13598541 -168816701 + MER96 DNA MER1_type 1 172 -3 186 256 122 49 chr6 13598543 13598625 -168816617 - MIR SINE MIR -168 94 7 197 317 69 0 chr6 13598672 13598773 -168816469 - L2 LINE L2 -17 3296 3189 1113 94 6 11 chr6 13598804 13598984 -168816258 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 692 177 23 6 chr6 13598986 13599161 -168816081 + GA-rich Low_complexity Low_complexity 1 178 0 222 174 0 0 chr6 13599174 13599220 -168816022 + GA-rich Low_complexity Low_complexity 1 46 0 339 353 7 20 chr6 13599477 13599627 -168815615 + MIR3 SINE MIR 23 170 -38 192 216 0 0 chr6 13601547 13601598 -168813644 + (TA)n Simple_repeat Simple_repeat 1 51 0 2459 80 0 3 chr6 13601847 13602148 -168813094 + AluY SINE Alu 2 301 -10 205 317 168 18 chr6 13604229 13604396 -168810846 + L2 LINE L2 2868 3059 -213 354 243 29 18 chr6 13604455 13604600 -168810642 + MER91A DNA MER1_type 3 188 -2 586 301 98 5 chr6 13604800 13605003 -168810239 - MIR SINE MIR -30 232 11 345 140 0 0 chr6 13605943 13606000 -168809242 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 465 179 0 11 chr6 13606286 13606381 -168808861 + MER5B DNA MER1_type 85 178 0 845 260 40 37 chr6 13606455 13606751 -168808491 + LTR16A1 LTR ERVL 159 455 -2 25 0 0 0 chr6 13607315 13607340 -168807902 + AT_rich Low_complexity Low_complexity 1 25 0 1560 195 3 10 chr6 13607399 13607697 -168807545 - AluJo SINE Alu -16 296 1 1691 95 0 5 chr6 13608122 13608333 -168806909 + AluSx SINE Alu 1 210 -102 235 48 0 0 chr6 13608335 13608377 -168806865 + AluSx SINE Alu 262 303 0 535 337 93 11 chr6 13608532 13608802 -168806440 - MLT1J LTR MaLR -177 334 43 934 202 22 0 chr6 13609296 13609479 -168805763 + MER5A DNA MER1_type 1 187 -2 455 312 23 6 chr6 13610059 13610232 -168805010 - MIR SINE MIR -46 216 41 1977 143 0 23 chr6 13610288 13610596 -168804646 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 13610702 13610723 -168804519 + AT_rich Low_complexity Low_complexity 1 21 0 1570 220 34 63 chr6 13611298 13611775 -168803467 - MLT1C LTR MaLR 0 467 5 2347 121 0 0 chr6 13611907 13612213 -168803029 + AluSx SINE Alu 1 306 -6 517 212 163 22 chr6 13612303 13612487 -168802755 + MIR SINE MIR 53 262 0 2335 114 0 0 chr6 13612591 13612897 -168802345 - AluSx SINE Alu -6 306 1 210 71 0 0 chr6 13612982 13613010 -168802232 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr6 13613655 13613680 -168801562 + AT_rich Low_complexity Low_complexity 1 25 0 841 73 28 0 chr6 13614710 13614819 -168800423 - AluSp/q SINE Alu -18 295 184 673 220 52 47 chr6 13614841 13615073 -168800169 - L2 LINE L2 -73 3240 3008 2017 136 3 0 chr6 13615172 13615467 -168799775 + AluSx SINE Alu 1 296 -16 315 213 133 100 chr6 13615519 13615669 -168799573 - MIR SINE MIR -49 213 59 759 199 18 6 chr6 13615891 13615910 -168799332 - L1MA10 LINE L1 0 6334 6316 1872 233 25 17 chr6 13615910 13616391 -168798851 - L1ME1 LINE L1 -10 6156 5672 184 224 35 17 chr6 13616823 13616881 -168798361 + MIR SINE MIR 84 142 -66 2183 107 3 0 chr6 13617115 13617404 -168797838 - AluSx SINE Alu -22 290 1 1242 128 0 0 chr6 13617466 13617646 -168797596 - AluSg SINE Alu -12 300 121 693 109 42 34 chr6 13617699 13617818 -168797424 - AluSg SINE Alu -181 129 10 478 141 0 0 chr6 13617820 13617898 -168797344 - AluS SINE Alu -4 307 230 1564 102 0 0 chr6 13617898 13618095 -168797147 - AluSc SINE Alu -112 197 1 1919 174 0 0 chr6 13618106 13618400 -168796842 - AluJb SINE Alu -18 294 1 708 209 20 70 chr6 13619040 13619241 -168796001 - MLT1J LTR MaLR -82 429 239 3945 165 24 11 chr6 13670516 13671255 -168743987 + L1MB2 LINE L1 5422 6170 -1 207 100 0 0 chr6 13672170 13672200 -168743042 + (T)n Simple_repeat Simple_repeat 1 30 0 586 287 22 22 chr6 13674121 13674393 -168740849 + AluSg1 SINE Alu 36 307 -2 1612 70 0 0 chr6 13675203 13675389 -168739853 - AluSg/x SINE Alu -20 290 105 258 146 0 0 chr6 13675389 13675430 -168739812 - Alu SINE Alu -260 41 1 196 337 122 20 chr6 13675458 13675556 -168739686 - MER5A DNA MER1_type -75 114 7 1587 137 3 51 chr6 13675674 13675966 -168739276 + AluSq SINE Alu 35 312 -1 2254 99 20 0 chr6 13677479 13677771 -168737471 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13678364 13678501 -168736741 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13678605 13678790 -168736452 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13679208 13679325 -168735917 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13679987 13680440 -168734802 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13681399 13682002 -168733240 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13682031 13682094 -168733148 + (CA)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr6 13682586 13682614 -168732628 + (G)n Simple_repeat Simple_repeat 1 28 0 2137 125 0 7 chr6 13683051 13683347 -168731895 - AluSc SINE Alu -15 294 1 297 274 35 53 chr6 13683348 13683461 -168731781 - MIR SINE MIR -98 164 54 309 285 65 32 chr6 13684287 13684410 -168730832 - MER5B DNA MER1_type -50 128 2 2134 110 4 0 chr6 13684825 13685135 -168730107 + AluSx SINE Alu 1 311 0 184 307 114 43 chr6 13685493 13685633 -168729609 - L2 LINE L2 -6 3266 3117 286 334 208 25 chr6 13685847 13686371 -168728871 - L2 LINE L2 -411 2903 2284 338 262 107 0 chr6 13686782 13686904 -168728338 - MIR SINE MIR -64 198 64 2116 114 10 7 chr6 13687107 13687397 -168727845 - AluSg SINE Alu -18 292 2 435 339 18 0 chr6 13687404 13687572 -168727670 - MER5A DNA MER1_type -6 183 13 212 282 101 34 chr6 13687663 13687749 -168727493 + MIR SINE MIR 71 150 -112 1301 108 33 75 chr6 13687749 13687989 -168727253 - MER30 DNA MER1_type 0 230 1 212 282 101 34 chr6 13687989 13688051 -168727191 + MIR SINE MIR 150 229 -33 192 250 0 0 chr6 13688359 13688395 -168726847 + L2 LINE L2 3266 3301 -12 400 238 19 0 chr6 13688475 13688580 -168726662 + MER5A DNA MER1_type 10 116 -73 1177 34 0 27 chr6 13688817 13688966 -168726276 + L1PA5 LINE L1 6010 6154 0 331 314 45 0 chr6 13688968 13689127 -168726115 + MIR SINE MIR 35 198 -58 317 216 137 93 chr6 13689149 13689288 -168725954 + MER91A DNA MER1_type 52 196 0 2287 117 0 0 chr6 13689790 13690097 -168725145 + AluSg SINE Alu 1 307 -3 2259 106 3 3 chr6 13690728 13691031 -168724211 - AluSx SINE Alu -9 303 1 1056 141 38 0 chr6 13691714 13691898 -168723344 - L1MA7 LINE L1 -6 6285 6095 2325 85 0 20 chr6 13692094 13692389 -168722853 - AluSc SINE Alu -20 289 1 1577 196 3 7 chr6 13692824 13693109 -168722133 + AluJo SINE Alu 1 284 -28 252 0 0 0 chr6 13693126 13693154 -168722088 + (TA)n Simple_repeat Simple_repeat 1 28 0 272 214 0 0 chr6 13693706 13693762 -168721480 - L2 LINE L2 -60 3253 3198 188 295 253 0 chr6 13693843 13693938 -168721304 - L3 LINE CR1 -1027 550 432 205 337 64 41 chr6 13694095 13694267 -168720975 + L2 LINE L2 2884 3059 -213 1599 228 66 24 chr6 13694717 13695169 -168720073 + MER74B LTR ERVL 69 539 -83 1414 204 34 67 chr6 13696013 13696177 -168719065 + MLT1A2 LTR MaLR 1 169 -205 2067 112 3 42 chr6 13696177 13696490 -168718752 + AluSx SINE Alu 1 301 -11 1414 204 34 67 chr6 13696490 13696712 -168718530 + MLT1A2 LTR MaLR 169 374 0 2104 133 0 3 chr6 13696814 13697115 -168718127 + AluJb SINE Alu 1 300 -12 367 329 43 6 chr6 13697151 13697315 -168717927 + MIR SINE MIR 13 182 -80 201 314 59 52 chr6 13698835 13698988 -168716254 + L2 LINE L2 2633 2786 -528 3596 116 17 17 chr6 13699278 13699805 -168715437 + MER1A DNA MER1_type 1 527 0 316 267 100 0 chr6 13699919 13700039 -168715203 + L1ME LINE L1 5558 5689 -432 213 243 14 40 chr6 13701904 13701978 -168713264 + GA-rich Low_complexity Low_complexity 6 77 0 22 35 0 0 chr6 13703547 13703576 -168711666 + AT_rich Low_complexity Low_complexity 1 29 0 2447 69 3 0 chr6 13704292 13704581 -168710661 - AluSp SINE Alu -23 290 1 32 26 0 0 chr6 13704591 13704630 -168710612 + AT_rich Low_complexity Low_complexity 1 39 0 587 104 21 0 chr6 13706787 13706883 -168708359 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr6 13707056 13707079 -168708163 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr6 13707090 13707130 -168708112 + (CA)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr6 13707272 13707295 -168707947 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1881 143 0 7 chr6 13707297 13707584 -168707658 - AluJb SINE Alu -27 285 1 863 206 10 36 chr6 13707924 13708118 -168707124 - MER5A DNA MER1_type 0 189 1 333 273 0 0 chr6 13709071 13709159 -168706083 - L1MC4 LINE L1 -1340 6702 6615 222 143 0 0 chr6 13709159 13709208 -168706034 + (GA)n Simple_repeat Simple_repeat 1 49 0 1406 150 105 20 chr6 13709219 13709466 -168705776 - AluJo SINE Alu -34 278 11 23 0 0 0 chr6 13709851 13709874 -168705368 + AT_rich Low_complexity Low_complexity 1 23 0 192 360 10 10 chr6 13711114 13711214 -168704028 + MIR3 SINE MIR 97 196 -12 24 0 0 0 chr6 13711411 13711435 -168703807 + AT_rich Low_complexity Low_complexity 1 24 0 264 316 132 6 chr6 13711613 13711787 -168703455 - MIR SINE MIR -6 256 61 234 91 0 0 chr6 13711799 13711832 -168703410 + (GA)n Simple_repeat Simple_repeat 2 34 0 1953 92 4 11 chr6 13712563 13712825 -168702417 + AluSc SINE Alu 19 278 -31 437 135 40 0 chr6 13713291 13713365 -168701877 + MADE1 DNA Mariner 1 77 -3 2274 92 3 3 chr6 13714489 13714782 -168700460 + AluSq SINE Alu 1 293 -20 773 272 19 5 chr6 13714853 13715059 -168700183 - MER3 DNA MER1_type 0 209 1 486 250 250 19 chr6 13716321 13716581 -168698661 + MLT1L LTR MaLR 215 534 -81 196 289 33 0 chr6 13716585 13716675 -168698567 - L2 LINE L2 0 3313 3221 659 321 79 43 chr6 13716857 13717595 -168697647 + L2 LINE L2 1932 2695 -619 421 334 49 37 chr6 13717756 13718106 -168697136 + L2 LINE L2 2919 3272 0 22 0 0 0 chr6 13718619 13718641 -168696601 + AT_rich Low_complexity Low_complexity 1 22 0 1012 229 112 0 chr6 13719599 13719813 -168695429 - MER8 DNA MER2_type 0 239 2 644 272 63 60 chr6 13720084 13720657 -168694585 - L2 LINE L2 -19 3294 2708 572 320 42 26 chr6 13720832 13721141 -168694101 + L2 LINE L2 3000 3313 0 539 286 182 16 chr6 13722706 13722898 -168692344 - MIR SINE MIR -38 224 1 302 292 163 22 chr6 13723035 13723213 -168692029 - L2 LINE L2 -3 3310 3108 2199 108 7 0 chr6 13723301 13723596 -168691646 - AluSx SINE Alu -15 297 1 215 319 78 26 chr6 13723602 13723718 -168691524 - L2 LINE L2 -18 3254 3133 247 250 25 12 chr6 13724052 13724132 -168691110 + L3b LINE CR1 1296 1376 -207 1939 116 25 0 chr6 13724133 13724257 -168690985 + AluSx SINE Alu 1 120 -192 282 29 0 0 chr6 13724257 13724292 -168690950 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1939 116 25 0 chr6 13724292 13724472 -168690770 + AluSx SINE Alu 120 312 0 181 157 0 39 chr6 13725207 13725258 -168689984 + GA-rich Low_complexity Low_complexity 2 50 0 800 137 7 43 chr6 13725292 13725431 -168689811 + AluJo SINE Alu 2 135 -177 5679 124 70 18 chr6 13725758 13726685 -168688557 - Tigger1 DNA MER2_type -1443 975 1 2411 240 69 13 chr6 13727531 13728157 -168687085 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13728157 13728236 -168687006 - MER31B LTR ERV1 -384 82 1 657 215 60 52 chr6 13730000 13730233 -168685009 - MER39 LTR ERV1 0 707 473 447 276 25 80 chr6 13730856 13730976 -168684266 - MER5A DNA MER1_type -21 168 58 2142 167 74 26 chr6 13730976 13731354 -168683888 - MSTD LTR MaLR 0 396 1 447 276 25 80 chr6 13731354 13731396 -168683846 - MER5A DNA MER1_type -131 58 15 800 236 20 92 chr6 13733536 13733729 -168681513 - L1MD3 LINE L1 -8 7987 7829 2170 131 0 3 chr6 13733729 13734035 -168681207 + AluSx SINE Alu 1 305 -7 800 236 20 92 chr6 13734035 13734189 -168681053 - L1MD3 LINE L1 -166 7829 7665 1558 187 15 4 chr6 13735033 13735306 -168679936 + AluJo SINE Alu 7 282 -30 603 209 79 70 chr6 13735442 13735657 -168679585 - MER21B LTR ERV1 -149 714 498 2928 106 30 2 chr6 13735679 13736112 -168679130 - LTR56 LTR ERV1 0 445 1 996 169 18 114 chr6 13736121 13736393 -168678849 - L1MEc LINE L1 -1899 4316 4071 1284 181 4 9 chr6 13736393 13736620 -168678622 - AluJo SINE Alu -1 311 86 4350 231 48 67 chr6 13736620 13737064 -168678178 - L1MEc LINE L1 -2143 4072 3621 1653 178 25 4 chr6 13737064 13737339 -168677903 - AluJo SINE Alu -31 281 1 4350 231 48 67 chr6 13737339 13739761 -168675481 - L1MEc LINE L1 -2594 3621 1059 309 26 0 0 chr6 13739761 13739799 -168675443 + (TG)n Simple_repeat Simple_repeat 2 39 0 4350 231 48 67 chr6 13739799 13740809 -168674433 - L1MEc LINE L1 -5156 1059 32 233 241 0 0 chr6 13740836 13740890 -168674352 + T-rich Low_complexity Low_complexity 1 54 0 361 242 148 53 chr6 13740893 13741336 -168673906 - L1MC/D LINE L1 -305 5816 5357 360 283 204 27 chr6 13741338 13741745 -168673497 - HAL1 LINE L1 0 2507 2029 6411 85 26 13 chr6 13741806 13743020 -168672222 - L1PA13 LINE L1 -3 6160 4935 815 151 0 0 chr6 13743027 13743146 -168672096 + FRAM SINE Alu 46 164 -12 399 319 68 16 chr6 13743146 13743394 -168671848 + L1 LINE L1 3384 3644 -2502 362 273 69 49 chr6 13743402 13743760 -168671482 + L1 LINE L1 3854 4213 -1933 957 207 4 80 chr6 13744523 13744760 -168670482 + MER20 DNA MER1_type 1 219 0 460 264 185 35 chr6 13744792 13745019 -168670223 - MIR SINE MIR 0 262 2 199 188 0 0 chr6 13745034 13745066 -168670176 - MIR SINE MIR -55 153 122 237 65 0 0 chr6 13745305 13745336 -168669906 + (TC)n Simple_repeat Simple_repeat 1 31 0 448 247 112 34 chr6 13745420 13745598 -168669644 - LTR16C LTR ERVL 0 491 300 202 204 23 0 chr6 13746350 13746394 -168668848 - MIR SINE MIR 0 262 218 340 268 62 67 chr6 13746433 13746642 -168668600 + L1ME3A LINE L1 5961 6168 -2 591 235 47 20 chr6 13746704 13746853 -168668389 - MIR SINE MIR -46 216 64 2339 109 3 0 chr6 13748399 13748703 -168666539 - AluSg SINE Alu -5 305 1 483 282 119 13 chr6 13748724 13748951 -168666291 + MIR SINE MIR 2 252 -10 188 171 29 29 chr6 13750133 13750203 -168665039 + CT-rich Low_complexity Low_complexity 3 72 0 752 218 26 13 chr6 13751195 13751351 -168663891 + MIR SINE MIR 13 170 -92 203 404 35 0 chr6 13751498 13751669 -168663573 - L2 LINE L2 -503 2811 2635 226 259 0 0 chr6 13751867 13751921 -168663321 + (TA)n Simple_repeat Simple_repeat 1 54 0 1041 219 5 9 chr6 13754551 13754766 -168660476 - MLT1A2 LTR MaLR -11 363 150 359 217 155 87 chr6 13754917 13755124 -168660118 + L1PBa LINE L1 740 960 -2263 26 50 0 0 chr6 13755490 13755530 -168659712 + AT_rich Low_complexity Low_complexity 1 40 0 1984 150 0 7 chr6 13755579 13755873 -168659369 + AluJb SINE Alu 3 294 -18 24 53 0 0 chr6 13755960 13755998 -168659244 + AT_rich Low_complexity Low_complexity 1 38 0 623 316 67 10 chr6 13756577 13756770 -168658472 - MIR SINE MIR -44 218 15 3127 147 32 26 chr6 13756796 13757215 -168658027 - MER34 LTR ERV1 -1 541 117 1891 142 10 10 chr6 13757215 13757517 -168657725 + AluJo SINE Alu 1 302 -10 3127 147 32 26 chr6 13757517 13757635 -168657607 - MER34 LTR ERV1 -425 117 1 1964 90 181 12 chr6 13757770 13758091 -168657151 - THE1C LTR MaLR 0 375 1 8677 202 23 17 chr6 13758112 13761056 -168654186 + L1PBa LINE L1 1648 4673 -2189 276 100 0 0 chr6 13761059 13761099 -168654143 + (TA)n Simple_repeat Simple_repeat 2 41 0 504 86 0 0 chr6 13761109 13761179 -168654063 + (CA)n Simple_repeat Simple_repeat 2 71 0 2338 133 3 16 chr6 13761179 13761542 -168653700 + L1PB1 LINE L1 5794 6151 0 710 233 57 5 chr6 13762497 13762690 -168652552 - Tigger1 DNA MER2_type -7 2411 2209 213 385 0 0 chr6 13762864 13763030 -168652212 + G-rich Low_complexity Low_complexity 1 166 0 879 161 310 41 chr6 13763626 13763868 -168651374 - AluJo SINE Alu 0 312 6 1800 153 4 4 chr6 13763878 13764152 -168651090 - AluJo SINE Alu 0 312 39 23 0 0 0 chr6 13764157 13764180 -168651062 + AT_rich Low_complexity Low_complexity 1 23 0 1905 158 0 16 chr6 13765793 13766096 -168649146 + AluSx SINE Alu 1 298 -14 475 36 0 0 chr6 13767857 13767913 -168647329 + AluY SINE Alu 2 57 -256 2084 138 0 10 chr6 13768391 13768702 -168646540 + AluSx SINE Alu 1 308 -4 473 217 148 57 chr6 13770037 13770281 -168644961 + L1MC5 LINE L1 7664 7929 -32 181 211 73 128 chr6 13770352 13770461 -168644781 + MIR SINE MIR 37 139 -69 2249 96 3 7 chr6 13771349 13771651 -168643591 + AluSx SINE Alu 2 302 -10 23 0 0 0 chr6 13771664 13771687 -168643555 + AT_rich Low_complexity Low_complexity 1 23 0 1697 152 58 32 chr6 13771854 13772163 -168643079 - MER2 DNA MER2_type -27 318 2 540 251 61 39 chr6 13772204 13772435 -168642807 + L1ME LINE L1 5371 5606 -560 527 296 17 11 chr6 13772635 13772811 -168642431 - MER5B DNA MER1_type -1 177 1 1940 76 64 0 chr6 13772912 13773176 -168642066 + AluY SINE Alu 26 306 -5 9708 55 7 111 chr6 13773684 13775230 -168640012 + SVA Other Other 2 1386 0 321 343 114 6 chr6 13775239 13775405 -168639837 - MIR SINE MIR -77 185 2 213 180 40 20 chr6 13776058 13776108 -168639134 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr6 13776124 13776146 -168639096 + AT_rich Low_complexity Low_complexity 1 22 0 778 150 7 54 chr6 13776156 13776303 -168638939 + FLAM_C SINE Alu 2 141 -2 5690 124 70 18 chr6 13776620 13777548 -168637694 - Tigger1 DNA MER2_type -1442 976 1 2411 240 69 13 chr6 13778393 13779019 -168636223 - MER67B LTR ERV1 0 661 1 476 139 38 0 chr6 13779019 13779098 -168636144 - MER31B LTR ERV1 -384 82 1 1062 239 52 0 chr6 13779629 13779842 -168635400 + MER58A DNA MER1_type 1 224 0 4180 157 28 15 chr6 13780497 13781236 -168634006 + L1MB2 LINE L1 5422 6170 -1 216 97 0 0 chr6 13782137 13782168 -168633074 + (T)n Simple_repeat Simple_repeat 1 31 0 1613 110 0 5 chr6 13782610 13782828 -168632414 - AluSx SINE Alu -95 217 1 1908 214 13 5 chr6 13782863 13783261 -168631981 - L1M4 LINE L1 -1028 5118 4718 477 276 20 30 chr6 13783237 13783440 -168631802 + L1M4 LINE L1 3419 3619 -2527 * 2740 112 14 12 chr6 13783442 13783861 -168631381 + L1MA2 LINE L1 5885 6304 0 353 155 272 10 chr6 13783887 13783990 -168631252 - MER5A DNA MER1_type -6 183 54 1986 258 35 18 chr6 13784096 13785040 -168630202 + L1M4 LINE L1 3599 4655 -1491 1160 136 0 28 chr6 13785040 13785216 -168630026 + AluJb SINE Alu 132 302 -10 414 346 64 4 chr6 13785219 13785499 -168629743 + L1M4 LINE L1 4650 4946 -1200 1368 217 67 59 chr6 13785927 13786314 -168628928 + MLT1B LTR MaLR 1 390 0 365 288 203 28 chr6 13786497 13786674 -168628568 + MIR SINE MIR 34 241 -21 525 239 33 77 chr6 13788210 13788463 -168626779 - L1ME3A LINE L1 -2 6168 5928 443 181 59 34 chr6 13788471 13788617 -168626625 - L1ME3A LINE L1 -196 5968 5814 319 272 164 28 chr6 13788599 13788886 -168626356 - L1MC5 LINE L1 -25 7936 7611 * 427 256 91 0 chr6 13789680 13789801 -168625441 + MER103 DNA DNA 34 165 -1 1686 98 31 9 chr6 13790124 13790349 -168624893 - MER30 DNA MER1_type 0 230 1 1739 164 18 0 chr6 13790471 13790772 -168624470 + AluJb SINE Alu 1 306 0 474 333 24 0 chr6 13791841 13792051 -168623191 + L1ME3A LINE L1 5611 5825 -345 2159 115 0 3 chr6 13792457 13792753 -168622489 + AluSx SINE Alu 1 295 -17 2539 204 62 6 chr6 13793099 13793627 -168621615 - MER74A LTR ERVL 0 558 1 536 203 16 24 chr6 13794380 13794503 -168620739 - L1MB7 LINE L1 -9 6175 6054 1968 123 29 4 chr6 13794561 13794864 -168620378 - AluSx SINE Alu 0 310 1 26 0 0 0 chr6 13794951 13794977 -168620265 + AT_rich Low_complexity Low_complexity 1 26 0 2383 175 73 2 chr6 13795478 13795900 -168619342 + LTR47A LTR ERVL 1 452 0 2248 99 0 0 chr6 13796014 13796306 -168618936 + AluSg SINE Alu 1 292 -18 372 268 102 0 chr6 13796504 13796631 -168618611 + MIR SINE MIR 59 198 -64 426 310 172 65 chr6 13797042 13797920 -168617322 + L2 LINE L2 2284 3266 -6 2111 110 4 0 chr6 13798278 13798588 -168616654 - AluSx SINE Alu 0 311 1 346 268 65 32 chr6 13799003 13799126 -168616116 + MER5B DNA MER1_type 2 128 -50 210 255 0 153 chr6 13799126 13799224 -168616018 - MIR SINE MIR -90 118 36 330 274 35 53 chr6 13799952 13800065 -168615177 + MIR SINE MIR 54 164 -98 2139 125 0 3 chr6 13800066 13800361 -168614881 + AluSc SINE Alu 1 294 -15 186 43 0 0 chr6 13801102 13801125 -168614117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1994 130 7 0 chr6 13801399 13801684 -168613558 - AluJb SINE Alu -25 287 1 181 157 0 39 chr6 13801717 13801768 -168613474 + CT-rich Low_complexity Low_complexity 2 50 0 1938 116 25 0 chr6 13802498 13802678 -168612564 - AluSx SINE Alu 0 312 120 282 29 0 0 chr6 13802678 13802713 -168612529 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1938 116 25 0 chr6 13802713 13802837 -168612405 - AluSx SINE Alu -192 120 1 247 250 25 12 chr6 13802838 13802918 -168612324 - L3b LINE CR1 -207 1376 1296 215 319 78 26 chr6 13803252 13803368 -168611874 + L2 LINE L2 3133 3254 -18 2199 108 7 0 chr6 13803374 13803669 -168611573 + AluSx SINE Alu 1 297 -15 302 292 163 22 chr6 13803757 13803935 -168611307 + L2 LINE L2 3108 3310 -3 539 286 182 16 chr6 13804072 13804264 -168610978 + MIR SINE MIR 1 224 -38 674 323 42 22 chr6 13805829 13806142 -168609100 - L2 LINE L2 0 3313 2995 852 273 63 59 chr6 13806309 13806900 -168608342 + L2 LINE L2 2708 3313 0 1007 229 112 0 chr6 13807151 13807365 -168607877 + MER8 DNA MER2_type 2 239 0 194 308 33 67 chr6 13807404 13807524 -168607718 - MIR3 SINE MIR -21 187 72 22 0 0 0 chr6 13808323 13808345 -168606897 + AT_rich Low_complexity Low_complexity 1 22 0 824 319 89 53 chr6 13808858 13810105 -168605137 - L2 LINE L2 0 3272 1932 224 289 33 0 chr6 13810287 13810377 -168604865 + L2 LINE L2 3221 3313 0 490 254 250 19 chr6 13810381 13810641 -168604601 - MLT1L LTR MaLR -81 534 215 814 272 19 5 chr6 13811903 13812109 -168603133 + MER3 DNA MER1_type 1 209 0 2255 92 3 3 chr6 13812180 13812473 -168602769 - AluSq SINE Alu -20 293 1 460 135 40 0 chr6 13813593 13813667 -168601575 - MADE1 DNA Mariner -3 77 1 1934 92 4 11 chr6 13814133 13814395 -168600847 - AluSc SINE Alu -31 278 19 234 91 0 0 chr6 13815123 13815156 -168600086 + (TC)n Simple_repeat Simple_repeat 2 34 0 314 305 132 6 chr6 13815168 13815342 -168599900 + MIR SINE MIR 61 256 -6 24 0 0 0 chr6 13815520 13815544 -168599698 + AT_rich Low_complexity Low_complexity 1 24 0 201 354 101 28 chr6 13815741 13815919 -168599323 - MIR3 SINE MIR -12 196 6 23 0 0 0 chr6 13817065 13817088 -168598154 + AT_rich Low_complexity Low_complexity 1 23 0 1381 162 97 12 chr6 13817472 13817719 -168597523 + AluJo SINE Alu 11 278 -34 222 143 0 0 chr6 13817730 13817779 -168597463 + (TC)n Simple_repeat Simple_repeat 1 49 0 346 273 0 0 chr6 13817779 13817867 -168597375 + L1MC4 LINE L1 6615 6702 -1340 923 206 10 36 chr6 13818820 13819014 -168596228 + MER5A DNA MER1_type 1 189 0 1918 147 0 0 chr6 13819353 13819663 -168595579 + AluJb SINE Alu 1 310 0 360 0 0 0 chr6 13819805 13819845 -168595397 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr6 13819856 13819879 -168595363 + AT_rich Low_complexity Low_complexity 1 23 0 623 100 20 0 chr6 13820052 13820152 -168595090 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 32 26 0 0 chr6 13822302 13822341 -168592901 + AT_rich Low_complexity Low_complexity 1 39 0 2425 69 3 0 chr6 13822351 13822640 -168592602 + AluSp SINE Alu 1 290 -23 22 35 0 0 chr6 13823356 13823385 -168591857 + AT_rich Low_complexity Low_complexity 1 29 0 236 230 14 40 chr6 13824951 13825025 -168590217 + CT-rich Low_complexity Low_complexity 6 77 0 250 272 61 18 chr6 13826670 13826784 -168588458 - L1ME4a LINE L1 -197 5924 5806 316 267 100 0 chr6 13826874 13826994 -168588248 - L1ME4a LINE L1 -432 5689 5558 3596 116 17 17 chr6 13827108 13827635 -168587607 - MER1A DNA MER1_type 0 527 1 201 314 59 52 chr6 13827925 13828078 -168587164 - L2 LINE L2 -528 2786 2633 367 329 43 6 chr6 13829598 13829762 -168585480 - MIR SINE MIR -80 182 13 2104 133 0 3 chr6 13829798 13830099 -168585143 - AluJb SINE Alu -12 300 1 1425 204 34 67 chr6 13830201 13830423 -168584819 - MLT1A2 LTR MaLR 0 374 169 2171 103 6 39 chr6 13830423 13830734 -168584508 - AluSx SINE Alu -11 301 1 1425 204 34 67 chr6 13830734 13830898 -168584344 - MLT1A2 LTR MaLR -205 169 1 1599 228 66 24 chr6 13831742 13832194 -168583048 - MER74B LTR ERVL -83 539 69 205 337 64 41 chr6 13832644 13832816 -168582426 - L2 LINE L2 -213 3059 2884 188 295 253 0 chr6 13832973 13833068 -168582174 + L3 LINE CR1 432 550 -1027 272 214 0 0 chr6 13833149 13833205 -168582037 + L2 LINE L2 3198 3253 -60 252 0 0 0 chr6 13833757 13833785 -168581457 + (TA)n Simple_repeat Simple_repeat 1 28 0 1635 189 3 7 chr6 13833802 13834087 -168581155 - AluJo SINE Alu -28 284 1 2580 81 0 0 chr6 13834522 13834831 -168580411 + AluSc SINE Alu 1 309 0 1056 141 38 0 chr6 13835007 13835191 -168580051 + L1MA7 LINE L1 6095 6285 -6 2289 108 0 3 chr6 13835874 13836180 -168579062 + AluSx SINE Alu 1 305 -7 2287 117 0 0 chr6 13836811 13837118 -168578124 - AluSg SINE Alu -3 307 1 317 216 137 93 chr6 13837620 13837759 -168577483 - MER91A DNA MER1_type 0 196 52 331 314 45 0 chr6 13837781 13837940 -168577302 - MIR SINE MIR -58 150 35 1177 34 0 27 chr6 13837942 13838091 -168577151 - L1PA5 LINE L1 0 6154 6010 400 238 19 0 chr6 13838328 13838433 -168576809 - MER5A DNA MER1_type -73 116 10 192 250 0 0 chr6 13838513 13838549 -168576693 - L2 LINE L2 -12 3301 3266 242 293 102 20 chr6 13838857 13838919 -168576323 - MIR SINE MIR -33 229 173 1354 101 38 71 chr6 13838919 13839157 -168576085 + MER30 DNA MER1_type 1 230 0 242 293 102 20 chr6 13839157 13839241 -168576001 - MIR SINE MIR -89 173 71 435 339 18 0 chr6 13839331 13839499 -168575743 + MER5A DNA MER1_type 13 183 -6 2381 95 10 3 chr6 13839506 13839812 -168575430 + AluSg SINE Alu 2 309 -1 1612 70 0 0 chr6 13840618 13840804 -168574438 - AluSg/x SINE Alu -20 292 107 275 122 0 0 chr6 13840804 13840845 -168574397 - Alu SINE Alu -259 41 1 219 316 122 20 chr6 13840873 13840971 -168574271 - MER5A DNA MER1_type -75 114 7 1977 93 3 41 chr6 13841085 13841375 -168573867 + AluSq SINE Alu 35 313 0 2254 99 20 0 chr6 13842881 13843173 -168572069 - AluSq SINE Alu -12 301 4 546 226 22 7 chr6 13843765 13843902 -168571340 + MIR SINE MIR 123 261 -1 272 335 27 49 chr6 13844006 13844191 -168571051 - L2 LINE L2 -219 3053 2873 259 308 43 26 chr6 13844609 13844726 -168570516 - L2 LINE L2 -568 2746 2628 1927 141 60 110 chr6 13845388 13845841 -168569401 - MSTB1 LTR MaLR 0 432 3 3659 148 17 22 chr6 13846800 13847403 -168567839 - MER6A DNA MER2_type -5 600 1 252 238 0 0 chr6 13847432 13847495 -168567747 + (CA)n Simple_repeat Simple_repeat 2 64 0 195 42 0 0 chr6 13847985 13848009 -168567233 + (TG)n Simple_repeat Simple_repeat 2 25 0 586 177 234 34 chr6 13848696 13848905 -168566337 + MER5C DNA MER1_type 73 323 -1 396 274 201 38 chr6 13850040 13850328 -168564914 - L3 LINE CR1 -24 1553 1219 1711 182 0 23 chr6 13850401 13850708 -168564534 - AluJb SINE Alu -6 306 7 527 323 14 31 chr6 13850926 13851149 -168564093 + MIR SINE MIR 20 238 -24 213 39 0 0 chr6 13851307 13851333 -168563909 + (T)n Simple_repeat Simple_repeat 1 26 0 1586 55 5 0 chr6 13851525 13851724 -168563518 - L1PB2 LINE L1 -2 6149 5950 914 278 50 20 chr6 13851966 13852284 -168562958 + L2 LINE L2 2393 2727 -587 2161 150 13 20 chr6 13852284 13852677 -168562565 - MLT1B LTR MaLR 0 390 1 914 278 50 20 chr6 13852677 13852758 -168562484 + L2 LINE L2 2727 2804 -510 878 271 61 52 chr6 13853028 13853485 -168561757 + L2 LINE L2 2818 3278 -35 279 0 0 0 chr6 13853488 13853519 -168561723 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 1344 217 47 47 chr6 13853937 13854297 -168560945 + MLT1A1 LTR MaLR 1 360 -5 1414 43 0 0 chr6 13854455 13854619 -168560623 + U1 snRNA snRNA 1 164 -1 293 305 29 9 chr6 13855549 13855654 -168559588 - L2 LINE L2 -8 3305 3199 266 327 18 45 chr6 13856462 13856572 -168558670 + L3 LINE CR1 1470 1576 -1 215 273 0 0 chr6 13856704 13856748 -168558494 + MIR3 SINE MIR 151 194 -14 1168 139 134 19 chr6 13858960 13859169 -168556073 + AluJo SINE Alu 1 233 -79 625 106 32 8 chr6 13859195 13859318 -168555924 + GA-rich Low_complexity Low_complexity 3 128 0 229 280 110 60 chr6 13860310 13860492 -168554750 + MIR SINE MIR 20 210 -52 260 360 28 78 chr6 13861305 13861700 -168553542 - L2 LINE L2 -91 3181 2807 393 270 124 22 chr6 13861905 13862083 -168553159 + MIR SINE MIR 7 202 -60 2305 105 0 0 chr6 13862155 13862450 -168552792 + AluSg1 SINE Alu 1 295 -14 1084 193 22 40 chr6 13863060 13863283 -168551959 + MER20 DNA MER1_type 1 219 0 386 248 144 32 chr6 13863672 13863797 -168551445 - MER58B DNA MER1_type 0 341 203 186 254 42 42 chr6 13863807 13863878 -168551364 - L3 LINE CR1 -487 1090 1020 382 281 43 22 chr6 13864056 13864195 -168551047 + MIR SINE MIR 49 190 -72 343 347 57 10 chr6 13864283 13864476 -168550766 - L3 LINE CR1 -884 693 492 317 276 0 83 chr6 13864493 13864649 -168550593 - L2 LINE L2 -11 3302 3160 2454 85 0 0 chr6 13867139 13867434 -168547808 - AluSc SINE Alu -13 296 2 734 120 17 0 chr6 13867809 13867926 -168547316 - L1MB3 LINE L1 0 6183 6065 397 301 23 45 chr6 13868519 13868695 -168546547 + MIR3 SINE MIR 16 187 -21 434 293 86 17 chr6 13869053 13869285 -168545957 - MIR SINE MIR -3 259 12 1171 172 9 32 chr6 13869556 13869777 -168545465 - MER20 DNA MER1_type -3 216 1 2317 98 20 0 chr6 13870669 13870966 -168544276 + AluSx SINE Alu 1 303 -9 1583 195 4 0 chr6 13871134 13871406 -168543836 + AluJb SINE Alu 1 273 -39 243 143 0 0 chr6 13871406 13871441 -168543801 + (GA)n Simple_repeat Simple_repeat 1 35 0 811 142 24 24 chr6 13871441 13871894 -168543348 + GA-rich Low_complexity Low_complexity 1 453 0 466 264 42 6 chr6 13872161 13872328 -168542914 - MIR SINE MIR -10 252 80 202 200 0 0 chr6 13872349 13872389 -168542853 - MIR SINE MIR -18 244 205 455 282 206 0 chr6 13872405 13872575 -168542667 + MIR SINE MIR 41 245 -17 464 255 138 0 chr6 13872900 13873131 -168542111 - L3 LINE CR1 -111 1466 1204 2023 119 67 25 chr6 13873805 13874165 -168541077 - THE1C LTR MaLR 0 375 1 287 224 0 40 chr6 13875291 13875367 -168539875 + Charlie7 DNA MER1_type 31 103 -2509 2553 181 13 11 chr6 13876744 13877209 -168538033 - MLT1C LTR MaLR 0 467 2 298 308 109 14 chr6 13877287 13877482 -168537760 - Charlie8 DNA MER1_type -1024 1393 95 1699 149 14 17 chr6 13877499 13877787 -168537455 + AluJo SINE Alu 6 292 -20 1846 145 71 0 chr6 13878060 13878384 -168536858 - MER7A DNA MER2_type 0 346 2 207 152 0 0 chr6 13879393 13879439 -168535803 + (CAT)n Simple_repeat Simple_repeat 1 46 0 1779 156 0 7 chr6 13880818 13881146 -168534096 - AluSx SINE Alu 0 326 1 257 291 0 25 chr6 13881278 13881357 -168533885 - MIR SINE MIR -70 192 116 931 168 47 58 chr6 13881700 13881891 -168533351 + MER5A DNA MER1_type 1 189 0 312 231 306 15 chr6 13881906 13882040 -168533202 + MIR SINE MIR 21 193 -69 1990 119 0 39 chr6 13882145 13882455 -168532787 + AluSx SINE Alu 5 302 -10 363 286 20 0 chr6 13882462 13882560 -168532682 - MLT1J2 LTR MaLR -13 437 338 288 256 151 0 chr6 13882632 13882718 -168532524 - MLT1J2 LTR MaLR -285 165 67 186 339 0 0 chr6 13883245 13883307 -168531935 - L2 LINE L2 -1 3312 3251 5754 121 38 18 chr6 13884003 13884413 -168530829 - L1PA15 LINE L1 -23 6142 5742 9047 37 6 9 chr6 13884413 13885486 -168529756 - MER11C LTR ERVK -2 1069 1 5754 121 38 18 chr6 13885486 13886285 -168528957 - L1PA15 LINE L1 -423 5742 4917 311 320 85 11 chr6 13886333 13886514 -168528728 - MIR3 SINE MIR -3 205 11 351 0 0 0 chr6 13887726 13887765 -168527477 + (TG)n Simple_repeat Simple_repeat 1 39 0 2128 93 0 0 chr6 13887765 13888045 -168527197 - AluSq SINE Alu -33 280 1 973 172 0 0 chr6 13888119 13888282 -168526960 + FAM SINE Alu 13 175 -10 1768 142 74 40 chr6 13889513 13889838 -168525404 + MER1B DNA MER1_type 2 337 0 2353 73 7 0 chr6 13889916 13890218 -168525024 + AluSq SINE Alu 1 304 -9 1106 232 5 0 chr6 13890366 13890573 -168524669 + MER58A DNA MER1_type 2 209 -15 23 0 0 0 chr6 13892182 13892205 -168523037 + AT_rich Low_complexity Low_complexity 1 23 0 1703 153 4 4 chr6 13892210 13892484 -168522758 + AluJo SINE Alu 39 312 0 906 155 227 64 chr6 13892493 13892757 -168522485 + AluJo SINE Alu 6 312 0 2125 119 0 19 chr6 13894345 13894663 -168520579 + AluSx SINE Alu 1 312 0 280 306 12 12 chr6 13894847 13894932 -168520310 + 7SK RNA RNA 12 96 -97 418 194 19 39 chr6 13895002 13895105 -168520137 - LTR33 LTR ERVL -3 518 418 * 432 175 12 0 chr6 13895098 13895178 -168520064 - MER117 DNA MER1_type -106 91 11 2647 141 26 5 chr6 13895375 13895794 -168519448 - MSTA LTR MaLR 0 428 1 9479 158 43 2 chr6 13895794 13897381 -168517861 - MSTA-int LTR MaLR 0 1651 1 2850 106 29 2 chr6 13897381 13897798 -168517444 - MSTA LTR MaLR 0 428 1 205 214 0 18 chr6 13897894 13897950 -168517292 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 642 208 79 28 chr6 13898219 13898397 -168516845 - MER5A DNA MER1_type -2 187 1 392 277 68 96 chr6 13898408 13898475 -168516767 - MER5B DNA MER1_type -6 172 105 2197 94 10 0 chr6 13898475 13898774 -168516468 + AluSx SINE Alu 1 302 -10 392 277 68 96 chr6 13898774 13898883 -168516359 - MER5B DNA MER1_type -73 105 1 248 270 25 113 chr6 13899990 13900194 -168515048 - MIR SINE MIR -56 206 21 390 368 25 50 chr6 13900468 13900707 -168514535 - L2 LINE L2 0 3272 3040 237 239 133 53 chr6 13900959 13901105 -168514137 - MIR3 SINE MIR -73 135 5 369 275 93 85 chr6 13901194 13901307 -168513935 - L2 LINE L2 -1330 1984 1873 1025 206 59 0 chr6 13901307 13901511 -168513731 - MER20 DNA MER1_type 0 219 4 369 275 93 85 chr6 13901511 13901761 -168513481 - L2 LINE L2 -1441 1873 1618 281 276 66 0 chr6 13901779 13901855 -168513387 - L2 LINE L2 0 3272 3192 357 228 19 152 chr6 13901855 13902013 -168513229 - MER45A DNA AcHobo -41 137 1 669 279 236 30 chr6 13902244 13902901 -168512341 - L2 LINE L2 -358 2956 2165 316 290 8 81 chr6 13902926 13903050 -168512192 - L2 LINE L2 -15 3298 3184 207 0 0 0 chr6 13903638 13903661 -168511581 + (T)n Simple_repeat Simple_repeat 1 23 0 584 291 82 85 chr6 13904514 13904836 -168510406 + L2 LINE L2 1395 1717 -1597 2154 93 3 3 chr6 13904836 13905127 -168510115 + AluSx SINE Alu 1 291 -21 584 291 82 85 chr6 13905127 13905140 -168510102 + L2 LINE L2 1717 1729 -1585 1559 191 3 3 chr6 13905140 13905422 -168509820 + AluJo SINE Alu 1 282 -30 212 77 26 0 chr6 13905425 13905464 -168509778 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 584 291 82 85 chr6 13905464 13905697 -168509545 + L2 LINE L2 1731 1966 -1348 969 289 111 65 chr6 13906125 13906887 -168508355 + L2 LINE L2 2004 2808 -506 2523 137 44 2 chr6 13906887 13907297 -168507945 - MSTA LTR MaLR 0 428 2 969 289 111 65 chr6 13907297 13907353 -168507889 + L2 LINE L2 2808 2860 -454 455 289 33 110 chr6 13907364 13907665 -168507577 + L2 LINE L2 2995 3272 0 306 0 0 0 chr6 13908238 13908272 -168506970 + (A)n Simple_repeat Simple_repeat 1 34 0 2200 104 0 0 chr6 13908384 13908681 -168506561 + AluSx SINE Alu 1 297 -15 552 222 22 37 chr6 13908775 13908910 -168506332 + MLT1D LTR MaLR 1 133 -372 213 324 14 14 chr6 13908910 13908984 -168506258 + MIR SINE MIR 187 260 -2 283 345 34 34 chr6 13908999 13909118 -168506124 - MIR SINE MIR -68 140 21 2226 212 80 47 chr6 13909937 13909948 -168505294 - MER21B LTR ERV1 -11 852 843 2166 98 0 10 chr6 13909948 13910253 -168504989 + AluSq SINE Alu 1 302 -11 2226 212 80 47 chr6 13910253 13911017 -168504225 - MER21B LTR ERV1 -20 843 1 2178 148 71 34 chr6 13911155 13911403 -168503839 - MSTA LTR MaLR 0 428 158 1592 78 10 0 chr6 13911403 13911609 -168503633 - AluSg/x SINE Alu -5 305 98 2178 148 71 34 chr6 13911609 13911771 -168503471 - MSTA LTR MaLR -270 158 3 1053 174 31 2 chr6 13911908 13912175 -168503067 + MER2 DNA MER2_type 21 345 0 188 35 35 0 chr6 13914296 13914325 -168500917 + (CCCCG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 13915385 13915407 -168499835 + AT_rich Low_complexity Low_complexity 1 22 0 296 287 78 17 chr6 13916053 13916168 -168499074 + MIR3 SINE MIR 84 205 -3 2404 76 0 10 chr6 13916889 13917203 -168498039 + AluSx SINE Alu 1 311 -1 195 314 88 66 chr6 13917494 13917631 -168497611 - MIR3 SINE MIR -67 141 2 1716 161 7 7 chr6 13918071 13918363 -168496879 + AluJo SINE Alu 7 298 -14 1806 156 0 17 chr6 13919075 13919377 -168495865 + AluSx SINE Alu 1 297 -15 459 36 0 0 chr6 13921137 13921193 -168494049 + AluY SINE Alu 2 57 -253 2005 135 0 10 chr6 13921671 13921982 -168493260 + AluSx SINE Alu 1 308 -4 420 224 146 57 chr6 13923323 13923569 -168491673 + L1MC5 LINE L1 7664 7931 -30 187 211 73 128 chr6 13923640 13923749 -168491493 + MIR SINE MIR 37 139 -69 2193 111 3 0 chr6 13924636 13924943 -168490299 + AluSq SINE Alu 2 309 -4 381 75 0 0 chr6 13924943 13924996 -168490246 + (TA)n Simple_repeat Simple_repeat 1 53 0 220 333 0 0 chr6 13927064 13927133 -168488109 - MIR SINE MIR -131 131 63 327 49 0 0 chr6 13928513 13928554 -168486688 + (T)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr6 13929207 13929229 -168486013 + AT_rich Low_complexity Low_complexity 1 22 0 207 69 0 0 chr6 13930855 13930884 -168484358 + (A)n Simple_repeat Simple_repeat 1 29 0 2300 89 7 0 chr6 13931124 13931415 -168483827 - AluSc SINE Alu -16 293 1 1635 106 0 74 chr6 13931482 13931738 -168483504 - AluSx SINE Alu -75 237 1 484 227 169 7 chr6 13931939 13932093 -168483149 - MER5A DNA MER1_type -2 187 9 2237 105 3 0 chr6 13932385 13932681 -168482561 - AluSg SINE Alu -13 297 1 259 299 11 11 chr6 13932915 13933002 -168482240 + MIR3 SINE MIR 113 199 -9 1905 122 3 41 chr6 13933586 13933871 -168481371 + L1PB2 LINE L1 5842 6115 -36 2333 97 0 3 chr6 13933871 13934171 -168481071 + AluSq SINE Alu 1 299 -14 1905 122 3 41 chr6 13934171 13934205 -168481037 + L1PB2 LINE L1 6115 6149 -2 372 287 168 10 chr6 13934817 13935026 -168480216 - MIR SINE MIR -19 243 2 198 0 0 0 chr6 13935796 13935818 -168479424 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1850 133 28 28 chr6 13937626 13937912 -168477330 + AluJo SINE Alu 5 290 -22 213 212 245 22 chr6 13938105 13938207 -168477035 - MIR SINE MIR -62 146 37 616 276 48 97 chr6 13938308 13938681 -168476561 - MLT1J LTR MaLR -1 510 156 237 263 92 0 chr6 13938719 13938795 -168476447 - MLT1L LTR MaLR -517 98 16 473 173 173 13 chr6 13939115 13939271 -168475971 + MER5A DNA MER1_type 9 189 0 243 308 51 26 chr6 13939429 13939546 -168475696 - MIR SINE MIR -1 261 142 242 280 168 28 chr6 13939721 13939864 -168475378 + MIR3 SINE MIR 30 192 -16 208 234 103 75 chr6 13940933 13941040 -168474202 - L2 LINE L2 -8 3305 3196 1065 198 53 20 chr6 13941079 13941326 -168473916 + MLT1A1 LTR MaLR 6 260 -105 197 287 70 42 chr6 13941644 13941787 -168473455 - MIR SINE MIR -50 212 66 229 271 158 38 chr6 13941983 13942116 -168473126 + L2 LINE L2 3123 3271 -1 225 224 45 0 chr6 13943694 13943761 -168471481 + MER21A LTR ERV1 124 193 -738 24 0 0 0 chr6 13944468 13944492 -168470750 + AT_rich Low_complexity Low_complexity 1 24 0 585 261 41 5 chr6 13945750 13945945 -168469297 + MIR SINE MIR 28 229 -33 471 191 11 22 chr6 13948334 13948423 -168466819 + MER81 DNA DNA 27 114 0 351 329 78 88 chr6 13949124 13949419 -168465823 - L2 LINE L2 -8 3264 2973 477 273 14 28 chr6 13949719 13949862 -168465380 + L2 LINE L2 3173 3313 0 319 286 129 0 chr6 13950051 13950222 -168465020 - L1ME4a LINE L1 -104 6017 5825 1481 240 60 23 chr6 13950290 13950727 -168464515 + L1MC4a LINE L1 5352 5804 -2004 2631 77 0 0 chr6 13950754 13951066 -168464176 + AluSx SINE Alu 1 312 0 487 281 31 6 chr6 13951109 13951269 -168463973 + L1MC4a LINE L1 5796 5959 -1849 182 216 0 39 chr6 13952107 13952158 -168463084 - MIR SINE MIR -62 146 98 427 261 43 29 chr6 13952158 13952365 -168462877 + L1ME LINE L1 4635 4844 -1302 231 190 0 0 chr6 13952366 13952424 -168462818 + (TA)n Simple_repeat Simple_repeat 2 59 0 394 167 60 12 chr6 13952503 13952587 -168462655 + MIR SINE MIR 64 151 -111 2310 95 0 16 chr6 13952836 13953142 -168462100 + AluSx SINE Alu 1 301 -11 23 0 0 0 chr6 13953155 13953178 -168462064 + AT_rich Low_complexity Low_complexity 1 23 0 1678 152 58 32 chr6 13953345 13953654 -168461588 - MER2 DNA MER2_type -27 318 2 526 251 61 39 chr6 13953695 13953926 -168461316 + L1ME LINE L1 5371 5606 -560 475 296 17 11 chr6 13954126 13954302 -168460940 - MER5B DNA MER1_type -1 177 1 1997 68 64 0 chr6 13954403 13954667 -168460575 + AluY SINE Alu 26 306 -5 315 319 53 68 chr6 13955414 13955584 -168459658 + MLT1J LTR MaLR 1 172 -339 2359 149 13 62 chr6 13955584 13955867 -168459375 + Tigger2a DNA MER2_type 2 256 -2452 2087 136 0 13 chr6 13955867 13956177 -168459065 + AluSx SINE Alu 1 306 -6 2359 149 13 62 chr6 13956177 13956348 -168458894 + Tigger2a DNA MER2_type 256 434 0 315 319 53 68 chr6 13956348 13956588 -168458654 + MLT1J LTR MaLR 172 405 -106 679 231 0 14 chr6 13956746 13956889 -168458353 + MER58B DNA MER1_type 195 335 -6 2484 153 56 19 chr6 13958306 13958719 -168456523 + MSTC LTR MaLR 1 428 0 1737 189 175 21 chr6 13959178 13959615 -168455627 + L1MD3 LINE L1 6972 7340 -655 2321 112 0 0 chr6 13959615 13959927 -168455315 + AluSp SINE Alu 1 312 -1 1737 189 175 21 chr6 13959927 13960217 -168455025 + L1MD3 LINE L1 7340 7995 0 * 2995 193 21 121 chr6 13960215 13961155 -168454087 + L1MC4 LINE L1 7209 7995 0 182 330 28 28 chr6 13961174 13961280 -168453962 - L2 LINE L2 -494 2820 2715 255 280 30 10 chr6 13961856 13961956 -168453286 - MLT1E2 LTR MaLR -277 349 248 1689 155 24 76 chr6 13962390 13962719 -168452523 + AluJb SINE Alu 1 312 0 792 256 34 17 chr6 13962770 13963004 -168452238 + MIR SINE MIR 23 260 -2 2262 93 10 10 chr6 13963506 13963817 -168451425 + AluSx SINE Alu 1 311 -1 517 275 58 5 chr6 13964288 13964477 -168450765 + MIR SINE MIR 49 247 -15 2264 90 0 10 chr6 13964550 13964862 -168450380 - AluSc SINE Alu 0 309 1 354 294 118 6 chr6 13965147 13965317 -168449925 - MIR3 SINE MIR 0 208 20 2030 148 7 0 chr6 13965815 13966118 -168449124 + AluSx SINE Alu 1 305 -7 374 308 92 0 chr6 13966202 13966332 -168448910 - MIR SINE MIR -71 191 50 2253 126 0 0 chr6 13966615 13966917 -168448325 + AluSx SINE Alu 1 302 -10 313 234 9 47 chr6 13967800 13967907 -168447335 + L1ME4a LINE L1 5989 6091 -30 258 105 0 0 chr6 13968936 13968974 -168446268 + (CCG)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr6 13968995 13969020 -168446222 + GC_rich Low_complexity Low_complexity 1 25 0 660 177 34 14 chr6 13969397 13969544 -168445698 - MER89 LTR ERV1 -409 150 1 327 233 110 43 chr6 13969545 13969708 -168445534 - MER5C DNA MER1_type -81 243 70 489 227 22 70 chr6 13970169 13970335 -168444907 - L2 LINE L2 -25 3288 3130 2201 98 11 0 chr6 13970335 13970621 -168444621 + AluSq SINE Alu 1 289 -24 489 227 22 70 chr6 13970621 13970639 -168444603 - L2 LINE L2 -183 3130 3113 207 241 37 0 chr6 13970673 13970727 -168444515 + MIR SINE MIR 180 235 -27 1699 219 66 20 chr6 13970753 13971192 -168444050 - MER65C LTR ERV1 0 461 3 854 255 82 58 chr6 13971309 13971688 -168443554 + L2 LINE L2 2665 3128 -185 2407 77 7 3 chr6 13971688 13971988 -168443254 - AluSq SINE Alu -12 301 1 854 255 82 58 chr6 13971988 13972178 -168443064 + L2 LINE L2 3128 3312 -1 224 146 83 0 chr6 13972465 13972513 -168442729 - L3 LINE CR1 -1 1576 1525 540 279 0 7 chr6 13973753 13973900 -168441342 + L1ME LINE L1 47 192 -5878 797 235 8 62 chr6 13974098 13974302 -168440940 - L1M4 LINE L1 -2525 3621 3432 2322 108 0 3 chr6 13974302 13974608 -168440634 + AluSq SINE Alu 1 305 -8 797 235 8 62 chr6 13974608 13974663 -168440579 - L1M4 LINE L1 -2714 3432 3376 1998 124 57 14 chr6 13974677 13975042 -168440200 - L1MA8 LINE L1 -174 6117 5743 891 175 12 0 chr6 13975118 13975278 -168439964 - L1MA8 LINE L1 -529 5771 5610 2718 33 0 0 chr6 13975884 13976184 -168439058 + AluY SINE Alu 2 301 -10 1581 147 55 29 chr6 13976243 13976515 -168438727 + AluJo SINE Alu 3 281 -31 23 68 0 0 chr6 13976516 13976560 -168438682 + AT_rich Low_complexity Low_complexity 1 44 0 2416 133 0 0 chr6 13976674 13977035 -168438207 + MER46B DNA MER2_type 1 236 0 2105 111 3 3 chr6 13977363 13977669 -168437573 + AluSx SINE Alu 1 306 -6 190 302 94 31 chr6 13977682 13977778 -168437464 - MIR SINE MIR -33 229 128 2252 107 0 0 chr6 13977982 13978292 -168436950 - AluSx SINE Alu -2 310 1 745 204 158 0 chr6 13978350 13978546 -168436696 + MER5C DNA MER1_type 1 227 -97 1901 143 3 3 chr6 13979090 13979384 -168435858 + AluJb SINE Alu 5 298 -14 189 156 156 0 chr6 13979895 13979940 -168435302 - L2 LINE L2 0 3272 3221 455 291 28 7 chr6 13980476 13980617 -168434625 + MIR SINE MIR 70 213 -49 370 242 36 85 chr6 13980964 13981129 -168434113 - L2 LINE L2 -1 3312 3156 1309 286 156 22 chr6 13981198 13981776 -168433466 - L2 LINE L2 -393 2921 2267 1464 258 103 58 chr6 13981776 13982512 -168432730 + LTR41 LTR ERVL 5 793 -2 1590 261 150 14 chr6 13982512 13983159 -168432083 - L2 LINE L2 -1037 2277 1543 527 289 68 43 chr6 13983425 13983498 -168431744 + MIR SINE MIR 22 92 -170 183 42 0 0 chr6 13983498 13983522 -168431720 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 527 289 68 43 chr6 13983522 13983683 -168431559 + MIR SINE MIR 92 262 0 2276 99 0 3 chr6 13983729 13984042 -168431200 - AluSx SINE Alu 0 312 1 2265 115 33 16 chr6 13984246 13984610 -168430632 + MSTA LTR MaLR 1 370 -58 570 319 114 19 chr6 13984605 13984965 -168430277 + MLT1J LTR MaLR 110 503 -8 * 2042 97 4 4 chr6 13985328 13985626 -168429616 - AluSc SINE Alu 0 298 1 255 329 0 13 chr6 13986467 13986546 -168428696 + MIR SINE MIR 49 126 -136 192 40 0 0 chr6 13987894 13987919 -168427323 + (T)n Simple_repeat Simple_repeat 1 25 0 2113 107 3 0 chr6 13988090 13988389 -168426853 + AluSx SINE Alu 1 300 -12 345 275 47 129 chr6 13988779 13988972 -168426270 - MIR3 SINE MIR -27 181 5 1961 120 0 0 chr6 13989100 13989407 -168425835 - AluSq SINE Alu 0 307 1 628 208 132 19 chr6 13989410 13989569 -168425673 + MER5B DNA MER1_type 2 178 0 871 134 0 15 chr6 13989586 13989720 -168425522 - FLAM_C SINE Alu -1 132 1 2770 84 3 3 chr6 13989742 13990097 -168425145 - MER1A DNA MER1_type 0 529 175 230 158 0 0 chr6 13990095 13990133 -168425109 - MER1A DNA MER1_type -489 38 1 * 594 182 182 14 chr6 13990187 13990335 -168424907 - MER5A DNA MER1_type -16 173 1 320 62 0 0 chr6 13992286 13992334 -168422908 - L1MB3 LINE L1 0 6183 6136 1788 151 3 22 chr6 13992337 13992648 -168422594 - AluSx SINE Alu -7 305 1 25 0 0 0 chr6 13992654 13992679 -168422563 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr6 13992754 13992789 -168422453 + AT_rich Low_complexity Low_complexity 1 35 0 185 247 0 26 chr6 13992789 13992866 -168422376 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 163 0 0 chr6 13992876 13992925 -168422317 - L1MC4 LINE L1 -1342 6700 6652 330 118 0 0 chr6 13992938 13992989 -168422253 + MLT2A1 LTR ERVL 394 444 0 951 165 19 0 chr6 13993008 13993166 -168422076 + MSTD LTR MaLR 234 394 -2 1429 186 0 8 chr6 13993273 13993521 -168421721 - AluJo SINE Alu -25 287 42 579 280 37 0 chr6 13993521 13993764 -168421478 - Charlie4a DNA MER1_type -72 436 185 922 189 52 24 chr6 13993764 13993976 -168421266 + AluJo SINE Alu 87 304 -8 868 178 61 11 chr6 13993980 13994160 -168421082 - Charlie4a DNA MER1_type -319 189 1 279 0 0 0 chr6 13994690 13994721 -168420521 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1852 139 0 23 chr6 13997540 13997843 -168417399 + AluJb SINE Alu 2 297 -15 237 307 129 0 chr6 13998016 13998117 -168417125 + MIR3 SINE MIR 88 201 -7 2291 84 3 0 chr6 14000160 14000457 -168414785 + AluSg SINE Alu 1 298 -12 283 227 53 40 chr6 14000508 14000583 -168414659 + MIR SINE MIR 55 130 -78 286 233 47 47 chr6 14000604 14000690 -168414552 + MIR SINE MIR 20 105 -103 476 300 32 25 chr6 14001378 14001576 -168413666 + MIR SINE MIR 20 218 -44 21 0 0 0 chr6 14002600 14002621 -168412621 + AT_rich Low_complexity Low_complexity 1 21 0 2106 123 0 0 chr6 14002676 14002984 -168412258 + AluY SINE Alu 1 308 -3 339 113 0 0 chr6 14003706 14003759 -168411483 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr6 14004258 14004282 -168410960 + (T)n Simple_repeat Simple_repeat 1 24 0 1437 130 63 76 chr6 14006456 14006572 -168408670 + AluJo SINE Alu 1 117 -195 405 0 0 0 chr6 14006572 14006617 -168408625 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1437 130 63 76 chr6 14006617 14006815 -168408427 + AluJo SINE Alu 117 311 -1 1189 155 22 104 chr6 14006867 14007039 -168408203 - AluJo SINE Alu -3 309 173 2177 94 0 0 chr6 14007039 14007327 -168407915 - AluSg SINE Alu -22 288 1 1189 155 22 104 chr6 14007327 14007471 -168407771 - AluJo SINE Alu -139 173 19 23 0 0 0 chr6 14007617 14007640 -168407602 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr6 14007789 14007841 -168407401 + AT_rich Low_complexity Low_complexity 1 52 0 32 43 0 0 chr6 14009384 14009430 -168405812 + AT_rich Low_complexity Low_complexity 1 46 0 380 92 10 194 chr6 14009650 14009748 -168405494 - MADE1 DNA Mariner 0 80 1 181 325 32 81 chr6 14009764 14009887 -168405355 + L2 LINE L2 3145 3261 -11 773 241 162 50 chr6 14009987 14010094 -168405148 + L1ME4a LINE L1 5634 5728 -393 1419 174 94 4 chr6 14010094 14010370 -168404872 + AluJo SINE Alu 1 301 -11 773 241 162 50 chr6 14010370 14010701 -168404541 + L1ME4a LINE L1 5728 6121 0 357 109 0 0 chr6 14011378 14011433 -168403809 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 303 105 70 chr6 14013775 14014003 -168401239 - L2 LINE L2 -49 3223 2988 324 0 0 0 chr6 14014432 14014468 -168400774 + (CA)n Simple_repeat Simple_repeat 2 37 0 701 231 89 62 chr6 14014711 14014936 -168400306 - MIR SINE MIR -3 259 29 390 21 0 0 chr6 14014962 14015009 -168400233 + (TG)n Simple_repeat Simple_repeat 2 48 0 1945 135 3 10 chr6 14015009 14015305 -168399937 - AluSx SINE Alu -18 294 1 1525 103 7 73 chr6 14015314 14015428 -168399814 - L1MA5A LINE L1 -3 6294 6174 2054 112 3 26 chr6 14015428 14015732 -168399510 - AluSp SINE Alu -12 301 5 1525 103 7 73 chr6 14015732 14015890 -168399352 - L1MA5A LINE L1 -123 6174 6040 418 274 51 57 chr6 14017725 14017900 -168397342 + Charlie8 DNA MER1_type 103 276 -2141 1804 189 177 16 chr6 14017922 14018345 -168396897 - MLT1E2 LTR MaLR 0 626 136 294 268 100 22 chr6 14018799 14018941 -168396301 - MIR SINE MIR -38 170 21 438 295 89 67 chr6 14019904 14020429 -168394813 + LTR67 LTR ERVL 2 538 -19 182 405 9 9 chr6 14020542 14020653 -168394589 + MIR3 SINE MIR 6 116 -92 * 303 257 177 0 chr6 14020636 14020749 -168394493 + MIR SINE MIR 119 251 -11 188 304 72 43 chr6 14020850 14020919 -168394323 + MIR SINE MIR 8 78 -184 181 128 128 0 chr6 14022036 14022075 -168393167 - MIR SINE MIR -117 145 102 408 88 0 0 chr6 14022591 14022648 -168392594 + (CA)n Simple_repeat Simple_repeat 2 58 0 2624 103 5 14 chr6 14022968 14023335 -168391907 + THE1B LTR MaLR 1 364 0 4173 55 2 0 chr6 14023392 14023898 -168391344 - L1PA10 LINE L1 -11 6157 5651 1393 249 40 17 chr6 14024003 14024340 -168390902 + MER119 DNA MER1_type 1 345 -238 1053 138 12 0 chr6 14024340 14024500 -168390742 + MER93b LTR ERV1 1 162 -211 649 208 8 0 chr6 14024511 14024631 -168390611 + MER93a LTR ERV1 282 402 0 782 201 41 55 chr6 14024646 14024674 -168390568 + MER119 DNA MER1_type 367 394 -189 2036 105 3 3 chr6 14024674 14024952 -168390290 + AluSx SINE Alu 7 287 -25 243 61 0 0 chr6 14024952 14024985 -168390257 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 782 201 41 55 chr6 14024992 14025182 -168390060 + MER119 DNA MER1_type 394 582 -1 906 115 0 0 chr6 14026786 14026916 -168388326 - AluSp/q SINE Alu -12 301 172 13564 61 2 1 chr6 14028005 14030500 -168384742 + L1PA6 LINE L1 3652 6153 -1 180 0 0 0 chr6 14031001 14031021 -168384221 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1012 90 0 0 chr6 14031034 14031167 -168384075 + AluJo/FLAM SINE Alu 1 133 -179 1548 184 20 3 chr6 14031169 14031468 -168383774 + AluJo SINE Alu 1 304 -8 435 173 0 0 chr6 14031471 14031552 -168383690 + GA-rich Low_complexity Low_complexity 4 84 0 535 243 18 0 chr6 14031552 14031663 -168383579 + MIR SINE MIR 144 256 -6 374 329 7 7 chr6 14031806 14031946 -168383296 + L3b LINE CR1 1209 1348 -235 1773 94 0 0 chr6 14032018 14032253 -168382989 + AluSg/x SINE Alu 76 310 0 564 284 135 18 chr6 14032367 14032589 -168382653 + MIR SINE MIR 2 249 -13 1479 172 79 7 chr6 14032808 14033099 -168382143 + AluJo SINE Alu 1 312 0 21 36 0 0 chr6 14033176 14033204 -168382038 + AT_rich Low_complexity Low_complexity 1 28 0 1745 171 0 20 chr6 14033499 14033798 -168381444 + AluJo SINE Alu 1 293 -19 2107 126 0 16 chr6 14033799 14034116 -168381126 + AluSx SINE Alu 1 312 0 2406 62 7 0 chr6 14034494 14034802 -168380440 - AluY SINE Alu -1 310 1 229 237 230 22 chr6 14034942 14035077 -168380165 + L1MC4a LINE L1 5815 5977 -1831 1775 150 0 55 chr6 14035192 14035367 -168379875 - AluJo SINE Alu -4 308 158 2204 89 7 0 chr6 14035367 14035658 -168379584 - AluSx SINE Alu -19 293 1 1775 150 0 55 chr6 14035658 14035808 -168379434 - AluJo SINE Alu -154 158 1 241 170 0 21 chr6 14035815 14035862 -168379380 - AluJ/FLAM SINE Alu -1 132 87 22 56 0 0 chr6 14035912 14035948 -168379294 + AT_rich Low_complexity Low_complexity 1 36 0 395 246 156 8 chr6 14036261 14036383 -168378859 + MIR SINE MIR 69 208 -54 381 279 211 20 chr6 14036895 14037099 -168378143 - MIR SINE MIR 0 262 20 1830 201 113 14 chr6 14037235 14037667 -168377575 + MLT1D LTR MaLR 31 505 0 623 137 0 0 chr6 14037868 14037963 -168377279 - AluJ/FLAM SINE Alu -216 96 2 465 216 0 17 chr6 14037965 14038081 -168377161 + L1ME2 LINE L1 5579 5692 -474 459 218 36 9 chr6 14038854 14038964 -168376278 + MIR SINE MIR 92 204 -58 512 180 78 5 chr6 14039111 14039241 -168376001 + L1ME2 LINE L1 6039 6334 0 2249 217 48 25 chr6 14039719 14039738 -168375504 + L1ME1 LINE L1 5560 5577 -589 1327 184 63 57 chr6 14039738 14040037 -168375205 - AluJb SINE Alu 0 302 2 2249 217 48 25 chr6 14040037 14040435 -168374807 + L1ME1 LINE L1 5577 5996 -170 186 103 0 0 chr6 14040435 14040464 -168374778 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 2249 217 48 25 chr6 14040464 14040635 -168374607 + L1ME1 LINE L1 5996 6162 -4 305 325 29 53 chr6 14041918 14042124 -168373118 + L1MC5 LINE L1 7478 7678 -283 208 222 0 0 chr6 14042124 14042160 -168373082 + polypurine Low_complexity Low_complexity 4 39 0 4411 197 25 14 chr6 14042265 14043694 -168371548 + L1MB7 LINE L1 4345 5793 -391 1496 135 66 143 chr6 14043694 14043835 -168371407 - MER7A DNA MER2_type -2692 346 196 2307 82 3 13 chr6 14043835 14044150 -168371092 - AluSx SINE Alu 0 312 1 1496 135 66 143 chr6 14044150 14044385 -168370857 - MER7A DNA MER2_type -2842 196 1 4411 197 25 14 chr6 14044385 14044697 -168370545 + L1MB7 LINE L1 5793 6100 -84 254 233 41 55 chr6 14045020 14045093 -168370149 - MIR3 SINE MIR -46 162 91 249 339 161 0 chr6 14045194 14045324 -168369918 + MIR SINE MIR 49 199 -63 23 0 0 0 chr6 14045642 14045665 -168369577 + AT_rich Low_complexity Low_complexity 1 23 0 1160 177 139 4 chr6 14046005 14046271 -168368971 - MER33 DNA MER1_type -22 302 1 837 203 31 6 chr6 14047615 14047778 -168367464 + MLT1J LTR MaLR 30 196 -315 263 255 64 11 chr6 14047823 14047917 -168367325 + MLT1J LTR MaLR 291 389 -122 1854 124 4 4 chr6 14049534 14049808 -168365434 + AluSx SINE Alu 7 280 -32 1034 97 23 6 chr6 14049814 14049989 -168365253 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 542 167 9 0 chr6 14050012 14050120 -168365122 + GA-rich Low_complexity Low_complexity 4 112 0 306 272 115 16 chr6 14050121 14050364 -168364878 - HAL1b LINE L1 -28 1320 1054 2199 105 0 6 chr6 14050365 14050678 -168364564 + AluY SINE Alu 1 311 0 180 0 0 0 chr6 14050731 14050751 -168364491 + (T)n Simple_repeat Simple_repeat 1 20 0 1614 142 12 0 chr6 14051048 14051302 -168363940 + AluSp SINE Alu 38 294 -19 399 128 35 0 chr6 14051303 14051389 -168363853 + GA-rich Low_complexity Low_complexity 1 89 0 2205 103 0 0 chr6 14052017 14052317 -168362925 - AluSx SINE Alu -12 300 1 763 280 58 0 chr6 14052599 14052824 -168362418 + MIR SINE MIR 21 258 -4 2279 130 60 0 chr6 14052856 14053224 -168362018 + MLT1B LTR MaLR 1 390 0 549 264 191 14 chr6 14055222 14055442 -168359800 + MIR SINE MIR 3 261 -1 522 323 97 56 chr6 14056561 14056679 -168358563 - L2 LINE L2 0 3313 3201 1694 136 74 52 chr6 14056679 14057046 -168358196 + THE1C LTR MaLR 1 375 0 522 323 97 56 chr6 14057046 14057661 -168357581 - L2 LINE L2 -112 3201 2494 2148 51 0 0 chr6 14057900 14058157 -168357085 - AluY SINE Alu -34 277 21 267 347 59 41 chr6 14059401 14059571 -168355671 - MIR3 SINE MIR -6 202 30 676 315 85 32 chr6 14060093 14060836 -168354406 + L2 LINE L2 2505 3295 -18 384 323 103 27 chr6 14061513 14061736 -168353506 + L1ME4a LINE L1 5518 5757 -364 304 257 29 0 chr6 14061738 14061808 -168353434 + MIR SINE MIR 187 258 -4 1808 149 0 32 chr6 14061930 14062246 -168352996 + AluJo SINE Alu 1 306 -6 194 161 0 18 chr6 14062810 14062866 -168352376 + (CA)n Simple_repeat Simple_repeat 1 55 0 235 236 0 18 chr6 14063929 14063984 -168351258 + Tigger5 DNA MER2_type 2 55 -2268 397 200 33 11 chr6 14063989 14064079 -168351163 + Tigger5 DNA MER2_type 2231 2322 -1 206 381 81 40 chr6 14064501 14064570 -168350672 - L3 LINE CR1 -33 1544 1479 2090 128 3 0 chr6 14064570 14064882 -168350360 - AluSp SINE Alu 0 313 1 206 381 81 40 chr6 14064882 14065035 -168350207 - L3 LINE CR1 -98 1479 1313 213 39 0 0 chr6 14065067 14065093 -168350149 + (ATG)n Simple_repeat Simple_repeat 3 28 0 540 246 175 52 chr6 14065233 14065501 -168349741 + L1ME4a LINE L1 5787 6087 -34 1017 234 4 58 chr6 14065607 14065678 -168349564 - MIR SINE MIR -8 254 181 1787 173 0 3 chr6 14065678 14065984 -168349258 - AluJo SINE Alu -7 305 1 1017 234 4 58 chr6 14065984 14066169 -168349073 - MIR SINE MIR -81 181 12 1134 68 115 133 chr6 14066496 14066730 -168348512 + MER30 DNA MER1_type 1 230 0 552 267 68 0 chr6 14067577 14067738 -168347504 + MIR SINE MIR 12 183 -79 1697 160 32 0 chr6 14068097 14068379 -168346863 + AluJb SINE Alu 1 291 -21 397 219 103 32 chr6 14070375 14070530 -168344712 - MER112 DNA MER1_type -23 237 72 217 227 53 13 chr6 14070535 14070610 -168344632 + (CATA)n Simple_repeat Simple_repeat 3 80 0 663 271 31 75 chr6 14070618 14070873 -168344369 + MLT1G1 LTR MaLR 1 178 -352 2042 124 0 0 chr6 14070873 14071198 -168344044 + AluSx SINE Alu 1 312 0 663 271 31 75 chr6 14071198 14071238 -168344004 + MLT1G1 LTR MaLR 178 218 -312 415 299 21 42 chr6 14071688 14071832 -168343410 - MIR SINE MIR -119 143 3 463 234 128 14 chr6 14071961 14072115 -168343127 - MIR SINE MIR -63 145 7 1478 155 89 24 chr6 14072934 14073225 -168342017 - AluJo SINE Alu -2 310 1 1104 161 40 67 chr6 14073792 14073837 -168341405 - MER20 DNA MER1_type -1 218 173 2100 113 7 3 chr6 14073837 14074137 -168341105 - AluSq SINE Alu -12 301 1 1104 161 40 67 chr6 14074137 14074315 -168340927 - MER20 DNA MER1_type -46 173 1 215 340 162 25 chr6 14076013 14076248 -168338994 + L2 LINE L2 2933 3199 -73 531 280 31 16 chr6 14077142 14077385 -168337857 - L1MC4a LINE L1 -193 5928 5679 1181 190 0 0 chr6 14078109 14078309 -168336933 + MER3 DNA MER1_type 10 209 0 217 206 250 0 chr6 14078567 14078635 -168336607 - L2 LINE L2 0 3272 3188 25 0 0 0 chr6 14079278 14079303 -168335939 + AT_rich Low_complexity Low_complexity 1 25 0 188 289 58 0 chr6 14079407 14079459 -168335783 - MIR SINE MIR -65 143 89 433 204 57 0 chr6 14080227 14080315 -168334927 + FLAM_A SINE Alu 2 94 -48 614 276 36 40 chr6 14080331 14080491 -168334751 - MIR SINE MIR -12 250 90 545 239 50 61 chr6 14080491 14080671 -168334571 - MER5B DNA MER1_type 0 178 1 614 276 36 40 chr6 14080671 14080760 -168334482 - MIR SINE MIR -172 90 2 2274 108 3 7 chr6 14080904 14081209 -168334033 - AluSq SINE Alu -9 304 1 244 169 39 39 chr6 14082203 14082280 -168332962 + L1MA8 LINE L1 6090 6166 -125 3277 138 16 67 chr6 14082285 14082893 -168332349 - MER6A DNA MER2_type -1 604 28 417 89 0 0 chr6 14082896 14082952 -168332290 + L1MA8 LINE L1 6168 6223 -68 1190 189 13 21 chr6 14082952 14083190 -168332052 + Tigger1 DNA MER2_type 1 236 -2182 * 8815 97 38 8 chr6 14083168 14084252 -168330990 + Tigger1 DNA MER2_type 960 2087 -331 2379 102 0 0 chr6 14084252 14084557 -168330685 + AluSq SINE Alu 1 305 -8 8815 97 38 8 chr6 14084557 14084705 -168330537 + Tigger1 DNA MER2_type 2087 2229 -189 3481 114 6 6 chr6 14084707 14085215 -168330027 + L1PA14 LINE L1 5620 6127 -34 21 0 0 0 chr6 14085343 14085364 -168329878 + AT_rich Low_complexity Low_complexity 1 21 0 979 161 102 0 chr6 14085393 14085579 -168329663 + Tigger1 DNA MER2_type 2213 2417 -1 256 178 0 27 chr6 14085579 14085652 -168329590 + L1MA7 LINE L1 6221 6291 0 236 125 25 25 chr6 14086349 14086389 -168328853 + L1MCa LINE L1 482 521 -5905 1494 192 84 9 chr6 14087805 14088138 -168327104 - MLT1C LTR MaLR -2 465 108 2320 108 0 13 chr6 14088173 14088489 -168326753 + AluSx SINE Alu 1 312 0 1840 142 0 14 chr6 14089743 14090025 -168325217 + AluJo SINE Alu 21 298 -14 2342 133 36 30 chr6 14090237 14090599 -168324643 + THE1B LTR MaLR 1 364 0 2511 197 24 37 chr6 14091093 14091640 -168323602 - MER68 LTR ERV1 0 562 23 249 215 161 21 chr6 14091835 14091928 -168323314 - MIR3 SINE MIR -10 198 93 231 111 44 22 chr6 14092379 14092424 -168322818 - L1PA15-16 LINE L1 -6103 746 701 507 280 65 23 chr6 14092886 14093100 -168322142 + L1MC4 LINE L1 7635 7857 -185 962 185 6 17 chr6 14093114 14093292 -168321950 - MLT1A1 LTR MaLR -8 357 182 260 149 0 0 chr6 14093486 14093533 -168321709 + L1MC4 LINE L1 7581 7627 -415 385 248 43 8 chr6 14093718 14093835 -168321407 - MER46C DNA MER2_type -159 179 59 413 108 0 14 chr6 14093956 14094030 -168321212 + (AGGGGG)n Simple_repeat Simple_repeat 3 75 0 382 105 53 0 chr6 14094033 14094090 -168321152 + Tigger1 DNA MER2_type 966 1025 -1393 * 3671 144 28 15 chr6 14094088 14094686 -168320556 + Tigger1 DNA MER2_type 1806 2411 -7 2784 91 3 3 chr6 14095624 14095985 -168319257 - L1PB1 LINE L1 0 6151 5791 204 40 0 0 chr6 14095985 14096010 -168319232 + (TG)n Simple_repeat Simple_repeat 1 25 0 226 235 0 0 chr6 14096010 14096061 -168319181 + L1MC4 LINE L1 6653 6703 -1339 * 234 254 0 0 chr6 14096019 14096086 -168319156 - L1MC4 LINE L1 -1339 6703 6637 12810 163 37 15 chr6 14096089 14099952 -168315290 - L1PBa LINE L1 -2190 4672 725 964 127 19 13 chr6 14099967 14100124 -168315118 - L1PBa LINE L1 -6705 158 1 191 253 22 66 chr6 14100375 14100466 -168314776 - L2 LINE L2 0 3272 3186 1964 90 181 12 chr6 14103927 14104248 -168310994 + THE1C LTR MaLR 1 375 0 3127 147 32 26 chr6 14104383 14104501 -168310741 + MER34 LTR ERV1 1 117 -425 1895 142 10 10 chr6 14104501 14104803 -168310439 - AluJo SINE Alu -10 302 1 3127 147 32 26 chr6 14104803 14105222 -168310020 + MER34 LTR ERV1 117 541 -1 623 316 67 10 chr6 14105248 14105441 -168309801 + MIR SINE MIR 15 218 -44 24 53 0 0 chr6 14106020 14106058 -168309184 + AT_rich Low_complexity Low_complexity 1 38 0 1984 150 0 7 chr6 14106145 14106439 -168308803 - AluJb SINE Alu -18 294 3 26 50 0 0 chr6 14106488 14106528 -168308714 + AT_rich Low_complexity Low_complexity 1 40 0 359 217 155 87 chr6 14106894 14107101 -168308141 - HAL1 LINE L1 -2263 244 24 1041 219 5 9 chr6 14107252 14107467 -168307775 + MLT1A2 LTR MaLR 150 363 -11 226 259 0 0 chr6 14110094 14110148 -168305094 + (TA)n Simple_repeat Simple_repeat 1 54 0 203 404 35 0 chr6 14110346 14110517 -168304725 + L2 LINE L2 2635 2811 -503 752 218 26 13 chr6 14110664 14110820 -168304422 - MIR SINE MIR -92 170 13 1405 192 84 9 chr6 14162706 14163039 -168252203 - MLT1C LTR MaLR -2 465 108 2357 108 0 13 chr6 14163074 14163390 -168251852 + AluSx SINE Alu 1 312 0 1888 142 0 14 chr6 14164645 14164927 -168250315 + AluJo SINE Alu 21 298 -14 2241 133 36 30 chr6 14165140 14165502 -168249740 + THE1B LTR MaLR 1 364 0 2409 197 24 37 chr6 14165996 14166543 -168248699 - MER68 LTR ERV1 0 562 23 265 226 161 21 chr6 14166738 14166831 -168248411 - MIR3 SINE MIR -10 198 93 484 280 65 23 chr6 14167789 14168003 -168247239 + L1MC4 LINE L1 7635 7857 -185 935 185 6 17 chr6 14168017 14168195 -168247047 - MLT1A1 LTR MaLR -8 357 182 245 149 0 0 chr6 14168389 14168436 -168246806 + L1MC4 LINE L1 7581 7627 -415 210 293 53 13 chr6 14168443 14168518 -168246724 + MIR SINE MIR 65 142 -66 366 241 76 35 chr6 14168621 14168766 -168246476 - MER46C DNA MER2_type -159 179 29 322 381 42 24 chr6 14168879 14169047 -168246195 + L2 LINE L2 3102 3272 0 459 270 175 0 chr6 14169276 14169476 -168245766 - MIR SINE MIR -6 256 22 2521 158 42 7 chr6 14169523 14169972 -168245270 + MLT1C LTR MaLR 3 467 0 237 83 0 0 chr6 14170728 14170764 -168244478 + (CA)n Simple_repeat Simple_repeat 2 37 0 2084 131 0 35 chr6 14171783 14172095 -168243147 - AluJb SINE Alu -11 301 1 185 297 149 0 chr6 14172891 14172965 -168242277 + L2 LINE L2 3174 3258 -14 2023 128 0 3 chr6 14173726 14174037 -168241205 - AluSg SINE Alu 0 310 1 530 232 49 21 chr6 14174140 14174282 -168240960 + MIR SINE MIR 35 180 -82 297 0 0 0 chr6 14174378 14174411 -168240831 + (A)n Simple_repeat Simple_repeat 1 33 0 1154 230 52 68 chr6 14174601 14174744 -168240498 + MSTD LTR MaLR 1 145 -251 6273 82 16 40 chr6 14174744 14175479 -168239763 + L1PA10 LINE L1 4759 5452 -716 2332 111 0 0 chr6 14175479 14175776 -168239466 + AluSx SINE Alu 4 300 -12 6273 82 16 40 chr6 14175776 14176466 -168238776 + L1PA10 LINE L1 5452 6157 -11 1154 230 52 68 chr6 14176466 14176722 -168238520 + MSTD LTR MaLR 145 394 -2 353 255 226 13 chr6 14177600 14177754 -168237488 + MIR SINE MIR 4 192 -60 745 210 13 0 chr6 14178981 14179138 -168236104 - MER3 DNA MER1_type -50 159 1 297 206 78 106 chr6 14179205 14179346 -168235896 - MER112 DNA MER1_type -34 226 90 1567 201 29 27 chr6 14180149 14180486 -168234756 + MLT2D LTR ERVL 1 357 -40 270 0 0 0 chr6 14180486 14180516 -168234726 + (TG)n Simple_repeat Simple_repeat 2 31 0 1567 201 29 27 chr6 14180516 14180544 -168234698 + MLT2D LTR ERVL 357 383 -14 207 292 10 31 chr6 14180567 14180663 -168234579 + L2 LINE L2 2996 3089 -183 1457 72 106 0 chr6 14180743 14180951 -168234291 + MER30 DNA MER1_type 1 230 0 667 198 153 0 chr6 14180980 14181137 -168234105 + MER5A DNA MER1_type 9 189 0 661 234 0 0 chr6 14181161 14181302 -168233940 - MER5B DNA MER1_type -37 141 1 274 270 52 26 chr6 14181305 14181420 -168233822 - MIR SINE MIR -56 152 35 285 209 0 0 chr6 14182517 14182584 -168232658 + (CA)n Simple_repeat Simple_repeat 1 67 0 412 312 27 24 chr6 14182857 14183021 -168232221 - MIR3 SINE MIR -6 202 36 22 56 0 0 chr6 14183669 14183705 -168231537 + AT_rich Low_complexity Low_complexity 1 36 0 575 264 76 71 chr6 14183706 14184126 -168231116 - L1ME4a LINE L1 -66 6055 5634 228 291 68 29 chr6 14184198 14184301 -168230941 + MIR SINE MIR 24 131 -77 317 294 59 39 chr6 14185380 14185533 -168229709 + MIR SINE MIR 101 256 -6 1130 156 28 47 chr6 14187387 14187515 -168227727 + MER3 DNA MER1_type 2 126 -83 2827 71 3 0 chr6 14187515 14187869 -168227373 - THE1A LTR MaLR 0 355 1 1130 156 28 47 chr6 14187869 14187952 -168227290 + MER3 DNA MER1_type 126 209 0 206 261 0 0 chr6 14187960 14188006 -168227236 + L2 LINE L2 3222 3267 -5 481 206 46 15 chr6 14188102 14188233 -168227009 - MIR SINE MIR -85 177 43 2334 113 3 0 chr6 14189709 14190020 -168225222 + AluSp SINE Alu 2 313 0 3814 209 0 13 chr6 14190671 14190902 -168224340 + L1ME1 LINE L1 5270 5504 -680 2140 120 7 14 chr6 14190902 14191038 -168224204 + AluSx SINE Alu 1 136 -176 2158 94 0 40 chr6 14191038 14191373 -168223869 + AluSg SINE Alu 1 310 0 2140 120 7 14 chr6 14191373 14191528 -168223714 + AluSx SINE Alu 136 290 -22 3814 209 0 13 chr6 14191528 14192216 -168223026 + L1ME1 LINE L1 5504 6184 0 1026 115 120 11 chr6 14192773 14192813 -168222429 - MLT2D LTR ERVL 0 414 380 396 0 0 0 chr6 14192813 14192857 -168222385 + (TG)n Simple_repeat Simple_repeat 2 45 0 1026 115 120 11 chr6 14192857 14192924 -168222318 - MLT2D LTR ERVL -34 380 322 222 37 0 0 chr6 14192924 14192951 -168222291 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 1026 115 120 11 chr6 14192951 14193025 -168222217 - MLT2D LTR ERVL -92 322 212 24 0 0 0 chr6 14193233 14193257 -168221985 + AT_rich Low_complexity Low_complexity 1 24 0 2093 148 7 0 chr6 14193380 14193690 -168221552 + AluSx SINE Alu 1 312 0 2201 110 7 10 chr6 14193725 14194033 -168221209 - AluSq SINE Alu -6 307 1 24 32 0 0 chr6 14194658 14194689 -168220553 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr6 14194784 14194810 -168220432 + AT_rich Low_complexity Low_complexity 1 26 0 315 232 89 27 chr6 14194906 14195018 -168220224 - MIR SINE MIR -70 192 74 276 285 200 0 chr6 14196048 14196113 -168219129 + MER5A DNA MER1_type 33 84 -105 1576 167 104 0 chr6 14196113 14196382 -168218860 - AluJo SINE Alu -15 297 1 276 285 200 0 chr6 14196382 14196446 -168218796 + MER5A DNA MER1_type 84 188 -1 759 308 64 31 chr6 14196549 14196698 -168218544 - L2 LINE L2 0 3313 3170 192 40 0 0 chr6 14196698 14196723 -168218519 + (CAAG)n Simple_repeat Simple_repeat 3 27 0 759 308 64 31 chr6 14196723 14197154 -168218088 - L2 LINE L2 -143 3170 2704 234 0 0 0 chr6 14197154 14197180 -168218062 + (CA)n Simple_repeat Simple_repeat 2 27 0 759 308 64 31 chr6 14197180 14197265 -168217977 - L2 LINE L2 -609 2704 2623 736 228 74 89 chr6 14197378 14197772 -168217470 + L1ME4a LINE L1 5574 5961 -160 74 79 0 0 chr6 14197785 14197950 -168217292 + AT_rich Low_complexity Low_complexity 1 165 0 235 253 27 13 chr6 14197950 14198025 -168217217 + L1MC/D LINE L1 5853 5928 -1880 2175 115 0 3 chr6 14198046 14198332 -168216910 + AluSx SINE Alu 1 285 -27 228 86 0 0 chr6 14198332 14198367 -168216875 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 14198398 14198421 -168216821 + AT_rich Low_complexity Low_complexity 1 23 0 259 168 53 0 chr6 14198465 14198560 -168216682 + (TA)n Simple_repeat Simple_repeat 2 101 0 442 288 126 11 chr6 14199364 14199555 -168215687 + MIR SINE MIR 35 247 -15 21 36 0 0 chr6 14202850 14202878 -168212364 + GC_rich Low_complexity Low_complexity 1 28 0 191 59 0 29 chr6 14203275 14203309 -168211933 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 94 0 0 chr6 14203326 14203390 -168211852 + GC_rich Low_complexity Low_complexity 1 64 0 459 278 105 10 chr6 14203615 14203824 -168211418 - MIR SINE MIR -20 242 14 402 219 0 67 chr6 14204257 14204362 -168210880 + L2 LINE L2 3216 3313 0 743 233 90 9 chr6 14204913 14205136 -168210106 + MIR SINE MIR 12 252 -10 1448 183 30 34 chr6 14205301 14205596 -168209646 + AluJo SINE Alu 1 294 -18 975 277 132 19 chr6 14205711 14206279 -168208963 + L2 LINE L2 2332 3039 -274 186 43 0 0 chr6 14206279 14206302 -168208940 + (CA)n Simple_repeat Simple_repeat 2 24 0 975 277 132 19 chr6 14206302 14206609 -168208633 + L2 LINE L2 3039 3310 -3 2360 82 0 7 chr6 14207516 14207838 -168207404 - AluY SINE Alu 0 311 1 1071 157 41 20 chr6 14208032 14208229 -168207013 + AluJo SINE Alu 85 285 -27 24 67 0 0 chr6 14208231 14208276 -168206966 + AT_rich Low_complexity Low_complexity 1 45 0 889 145 0 0 chr6 14208873 14209004 -168206238 - FLAM_C SINE Alu -2 131 1 232 246 229 39 chr6 14209019 14209198 -168206044 - MIR SINE MIR -48 214 2 552 292 114 40 chr6 14209418 14210084 -168205158 + L2 LINE L2 2589 3313 0 2158 63 81 18 chr6 14210105 14210390 -168204852 - AluSx SINE Alu -9 303 1 258 151 66 142 chr6 14210508 14210614 -168204628 - L1MB3 LINE L1 -1 6179 6082 22 35 0 0 chr6 14211344 14211373 -168203869 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr6 14212284 14212305 -168202937 + (CA)n Simple_repeat Simple_repeat 2 22 0 1050 285 99 40 chr6 14212457 14213431 -168201811 + L1ME3 LINE L1 2639 3555 -2591 2343 57 7 0 chr6 14213431 14213735 -168201507 + AluY SINE Alu 1 306 0 1050 285 99 40 chr6 14213735 14214195 -168201047 + L1ME3 LINE L1 3555 3987 -2159 1693 112 123 11 chr6 14214195 14214464 -168200778 - AluSg1 SINE Alu -10 299 1 1050 285 99 40 chr6 14214464 14214746 -168200496 + L1ME3 LINE L1 3987 4507 -1639 426 218 122 131 chr6 14214837 14215182 -168200060 - MLT1H LTR MaLR 0 549 167 2197 104 0 10 chr6 14215182 14215481 -168199761 - AluSx SINE Alu -16 296 1 426 218 122 131 chr6 14215481 14215610 -168199632 - MLT1H LTR MaLR -382 167 38 352 264 56 34 chr6 14215682 14215860 -168199382 + L1ME3 LINE L1 4747 4928 -1218 1527 186 139 65 chr6 14215894 14216209 -168199033 + MLT1F LTR MaLR 27 392 -150 1756 172 69 31 chr6 14216209 14216249 -168198993 - MLT1A2 LTR MaLR 0 374 337 2359 74 0 17 chr6 14216249 14216569 -168198673 + AluSq SINE Alu 1 315 0 1756 172 69 31 chr6 14216569 14216885 -168198357 - MLT1A2 LTR MaLR -37 337 1 1527 186 139 65 chr6 14216885 14217049 -168198193 + MLT1F LTR MaLR 392 542 0 1019 299 92 30 chr6 14217203 14217775 -168197467 + L1ME3 LINE L1 5175 5790 -372 2126 129 0 16 chr6 14217775 14218085 -168197157 + AluSx SINE Alu 1 305 -7 1019 299 92 30 chr6 14218085 14218187 -168197055 + L1ME3 LINE L1 5790 5884 -278 183 80 0 0 chr6 14218254 14218279 -168196963 + (TG)n Simple_repeat Simple_repeat 2 26 0 44140 29 21 1 chr6 14218422 14224454 -168190788 + L1HS LINE L1 1 6155 0 922 241 86 79 chr6 14224469 14224875 -168190367 + MLT2B1 LTR ERVL 28 436 -84 305 190 69 9 chr6 14224878 14224994 -168190248 + (TA)n Simple_repeat Simple_repeat 1 123 0 369 289 118 20 chr6 14225005 14225209 -168190033 + L1ME3A LINE L1 5256 5479 -2329 276 257 40 20 chr6 14225295 14225447 -168189795 + (TA)n Simple_repeat Simple_repeat 2 156 0 915 120 16 0 chr6 14225943 14226068 -168189174 + AluJb SINE Alu 1 127 -185 31 0 0 0 chr6 14226068 14226099 -168189143 + AT_rich Low_complexity Low_complexity 1 31 0 601 239 35 82 chr6 14226107 14226425 -168188817 - L1ME4a LINE L1 -281 5840 5538 23 33 0 0 chr6 14226594 14226624 -168188618 + AT_rich Low_complexity Low_complexity 1 30 0 2518 84 20 0 chr6 14227416 14227762 -168187480 + L1PA13 LINE L1 5811 6163 0 212 0 36 0 chr6 14227859 14227887 -168187355 + (TA)n Simple_repeat Simple_repeat 2 30 0 828 178 6 31 chr6 14227891 14228054 -168187188 - AluJo SINE Alu -37 275 117 825 153 0 0 chr6 14228090 14228214 -168187028 - AluJo SINE Alu -188 124 1 249 281 0 0 chr6 14228241 14228305 -168186937 - L2 LINE L2 -4 3309 3246 254 284 27 0 chr6 14228475 14228549 -168186693 + MIR3 SINE MIR 117 192 -16 2392 97 0 0 chr6 14228701 14228999 -168186243 + AluSq SINE Alu 1 298 -15 189 0 0 0 chr6 14228999 14229020 -168186222 + (TA)n Simple_repeat Simple_repeat 2 22 0 234 0 0 0 chr6 14229220 14229246 -168185996 + (T)n Simple_repeat Simple_repeat 1 26 0 2110 251 35 21 chr6 14230008 14230578 -168184664 - L1ME3A LINE L1 -36 6134 5557 893 222 168 32 chr6 14231468 14231783 -168183459 + L1ME3A LINE L1 5781 6138 -32 424 179 26 0 chr6 14231797 14231875 -168183367 - AluSx SINE Alu -27 282 203 3293 161 137 59 chr6 14231876 14232638 -168182604 - LTR12 LTR ERV1 -1 825 5 2455 182 25 24 chr6 14232654 14233247 -168181995 - pTR5 LTR ERV1 -1094 1344 751 278 139 0 12 chr6 14233247 14233294 -168181948 - AluSx SINE Alu -94 208 171 1040 118 0 0 chr6 14233294 14233430 -168181812 - AluSx SINE Alu -174 138 3 188 360 73 20 chr6 14233606 14233756 -168181486 - MIR SINE MIR -28 234 77 263 159 0 0 chr6 14233990 14234034 -168181208 - AluS SINE Alu -28 272 229 755 216 45 54 chr6 14234034 14234256 -168180986 + pTR5 LTR ERV1 745 964 -1474 2383 191 91 117 chr6 14234447 14235292 -168179950 + LTR12 LTR ERV1 3 825 -1 885 223 48 0 chr6 14235321 14235509 -168179733 - AluSx SINE Alu -107 205 9 1513 209 71 9 chr6 14236355 14236694 -168178548 - MLT1A2 LTR MaLR 0 374 15 254 277 15 0 chr6 14236694 14236759 -168178483 + MIR SINE MIR 171 236 -26 438 312 0 7 chr6 14236923 14237061 -168178181 - MIR SINE MIR -111 151 15 665 188 199 0 chr6 14237233 14237414 -168177828 - MER20 DNA MER1_type 0 219 3 218 370 51 61 chr6 14238291 14238586 -168176656 - L2 LINE L2 -2 3270 2979 22 35 0 0 chr6 14239292 14239321 -168175921 + AT_rich Low_complexity Low_complexity 1 29 0 2276 113 10 0 chr6 14239518 14239828 -168175414 - AluSp SINE Alu 0 313 1 1841 136 24 3 chr6 14239873 14240160 -168175082 + AluJo SINE Alu 5 297 -15 2380 85 0 0 chr6 14240163 14240457 -168174785 + AluY SINE Alu 1 294 -17 1608 239 42 52 chr6 14240547 14241162 -168174080 + L1MC5 LINE L1 6646 7252 -728 1186 246 58 81 chr6 14241296 14241514 -168173728 + L1MC5 LINE L1 7290 7511 -450 1859 168 58 34 chr6 14241514 14241895 -168173347 - MLT1B LTR MaLR 0 390 1 1186 246 58 81 chr6 14241895 14241991 -168173251 + L1MC5 LINE L1 7511 7608 -353 1610 197 3 16 chr6 14241991 14242296 -168172946 - AluJo SINE Alu -11 301 1 1186 246 58 81 chr6 14242296 14242550 -168172692 + L1MC5 LINE L1 7608 7846 -115 1836 127 0 72 chr6 14242550 14242696 -168172546 + AluJb SINE Alu 1 156 -161 2943 12 0 3 chr6 14242696 14243015 -168172227 + AluYb8 SINE Alu 1 318 0 1836 127 0 72 chr6 14243015 14243207 -168172035 + AluJb SINE Alu 156 317 0 347 195 0 35 chr6 14244125 14244212 -168171030 + L1MC5 LINE L1 7842 7925 -36 420 285 66 48 chr6 14244248 14244517 -168170725 + L1MC5 LINE L1 7514 7793 -168 360 0 0 0 chr6 14244517 14244557 -168170685 + (CA)n Simple_repeat Simple_repeat 2 41 0 420 285 66 48 chr6 14244557 14244666 -168170576 + L1MC5 LINE L1 7793 7899 -62 2304 100 0 28 chr6 14245069 14245389 -168169853 + AluSq SINE Alu 1 311 -2 274 0 73 0 chr6 14245389 14245430 -168169812 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 32 26 0 0 chr6 14245543 14245582 -168169660 + AT_rich Low_complexity Low_complexity 1 39 0 1766 208 46 11 chr6 14246867 14247233 -168168009 + MER57A LTR ERV1 11 389 -14 1322 94 0 0 chr6 14247233 14247403 -168167839 - AluSg/x SINE Alu -10 300 131 690 141 0 0 chr6 14247403 14247502 -168167740 + AluSq/x SINE Alu 9 107 -205 1941 129 57 0 chr6 14247912 14248191 -168167051 + AluSx SINE Alu 1 295 -17 290 301 44 15 chr6 14248222 14248358 -168166884 - MIR SINE MIR -72 190 51 688 230 16 27 chr6 14248402 14248589 -168166653 - MIR SINE MIR 0 262 78 642 207 68 81 chr6 14248845 14249291 -168165951 - LTR33 LTR ERVL -1 520 32 2211 91 35 0 chr6 14249419 14249704 -168165538 + AluSp SINE Alu 1 295 -18 1115 200 5 9 chr6 14249849 14250087 -168165155 + L1MA9 LINE L1 5555 5791 -500 254 247 0 22 chr6 14250105 14250194 -168165048 - L1MC4 LINE L1 -1339 6703 6617 * 274 253 0 40 chr6 14250133 14250232 -168165010 + L1MC4 LINE L1 6614 6708 -1334 * 2302 168 71 14 chr6 14250207 14250701 -168164541 + L1MA9 LINE L1 5783 6304 -8 253 228 79 71 chr6 14251750 14251877 -168163365 + L2 LINE L2 2379 2506 -808 2345 99 0 0 chr6 14251910 14252204 -168163038 + AluSx SINE Alu 1 294 -18 204 294 28 63 chr6 14252204 14252256 -168162986 - L2 LINE L2 -20 3293 3241 2339 97 0 3 chr6 14252256 14252554 -168162688 + AluSx SINE Alu 1 297 -15 204 294 28 63 chr6 14252554 14252644 -168162598 - L2 LINE L2 -72 3241 3156 599 303 139 9 chr6 14252814 14253144 -168162098 - MLT1L LTR MaLR -234 381 9 180 339 22 84 chr6 14253207 14253434 -168161808 + L2 LINE L2 2575 2787 -527 317 328 35 35 chr6 14253447 14253595 -168161647 - MIR SINE MIR -17 245 95 1997 161 92 65 chr6 14253595 14253662 -168161580 - MLT1D LTR MaLR 0 505 441 2111 124 3 0 chr6 14253662 14253975 -168161267 - AluSx SINE Alu 0 314 1 1997 161 92 65 chr6 14253975 14254397 -168160845 - MLT1D LTR MaLR -64 441 2 317 328 35 35 chr6 14254397 14254446 -168160796 - MIR SINE MIR -166 96 48 277 208 32 104 chr6 14254514 14254639 -168160603 + L2 LINE L2 2944 3059 -213 468 86 0 0 chr6 14254785 14254855 -168160387 + (TTGG)n Simple_repeat Simple_repeat 1 70 0 233 214 0 0 chr6 14255297 14255339 -168159903 + (CA)n Simple_repeat Simple_repeat 2 43 0 288 303 37 9 chr6 14255339 14255448 -168159794 - MIR SINE MIR -138 124 13 801 204 76 19 chr6 14255525 14255736 -168159506 - L1PA16 LINE L1 -4 6162 5940 2058 104 43 0 chr6 14256019 14256298 -168158944 + AluSq SINE Alu 1 291 -22 324 159 32 159 chr6 14257465 14257591 -168157651 + MER5B DNA MER1_type 50 159 -19 187 256 0 0 chr6 14257701 14257740 -168157502 - MER5B DNA MER1_type -76 102 64 1782 150 0 4 chr6 14257751 14258018 -168157224 - AluJb SINE Alu 0 312 47 252 205 64 39 chr6 14258604 14258682 -168156560 - MIR SINE MIR -93 115 36 417 237 122 35 chr6 14258729 14258978 -168156264 - MER46C DNA MER2_type -1 337 1 546 304 54 22 chr6 14259001 14259185 -168156057 - MIR SINE MIR -1 261 72 197 235 39 0 chr6 14260538 14260589 -168154653 + MIR SINE MIR 60 112 -96 358 351 18 0 chr6 14260593 14260704 -168154538 - L2 LINE L2 0 3272 3160 1049 176 5 5 chr6 14260713 14260901 -168154341 - MER5A DNA MER1_type -1 188 1 4224 191 41 22 chr6 14261159 14262082 -168153160 + L1MB8 LINE L1 4756 5703 -475 2308 96 3 0 chr6 14262082 14262374 -168152868 + AluSq SINE Alu 1 293 -20 4224 191 41 22 chr6 14262374 14262860 -168152382 + L1MB8 LINE L1 5703 6178 0 197 0 0 0 chr6 14263123 14263147 -168152095 + MER5A DNA MER1_type 1 24 -165 1320 176 52 0 chr6 14263148 14263381 -168151861 + L1MA9 LINE L1 5545 5789 -502 4492 160 36 31 chr6 14263391 14264749 -168150493 + pTR5 LTR ERV1 741 2430 -8 1820 188 51 44 chr6 14264759 14265006 -168150236 + L1MA9 LINE L1 5798 6051 -261 1853 174 0 0 chr6 14265006 14265299 -168149943 + AluSx SINE Alu 1 293 -19 1820 188 51 44 chr6 14265299 14265525 -168149717 + L1MA9 LINE L1 6051 6274 -38 28 29 0 0 chr6 14265525 14265560 -168149682 + AT_rich Low_complexity Low_complexity 1 35 0 901 164 42 0 chr6 14265565 14265730 -168149512 + MER5A DNA MER1_type 17 188 -1 444 333 35 22 chr6 14265835 14266063 -168149179 - L2 LINE L2 -575 2739 2509 1701 154 70 9 chr6 14266098 14266428 -168148814 - L1MB4 LINE L1 -1 6179 5830 2525 132 8 5 chr6 14266429 14267087 -168148155 + MER50 LTR ERV1 1 711 -23 295 148 0 19 chr6 14267093 14267147 -168148095 - L1MB4 LINE L1 -346 5828 5776 225 132 75 0 chr6 14267147 14267200 -168148042 + (TA)n Simple_repeat Simple_repeat 2 58 0 2570 178 39 29 chr6 14267204 14267841 -168147401 - L1MB4 LINE L1 -376 5804 5173 218 317 12 0 chr6 14267877 14267959 -168147283 - L2 LINE L2 -4 3309 3227 324 312 0 0 chr6 14268234 14268311 -168146931 - MER69 DNA AcHobo -2449 77 1 3545 103 9 59 chr6 14268541 14269185 -168146057 + MER4B LTR ERV1 1 779 0 1122 175 63 114 chr6 14269454 14269571 -168145671 + MER69 DNA AcHobo 2150 2271 -255 1067 93 0 182 chr6 14269571 14269807 -168145435 + 7SK RNA RNA 1 193 0 1122 175 63 114 chr6 14269807 14269957 -168145285 + MER69 DNA AcHobo 2271 2393 -133 2576 68 0 0 chr6 14269957 14270266 -168144976 - AluY SINE Alu -2 309 1 1122 175 63 114 chr6 14270266 14270392 -168144850 + MER69 DNA AcHobo 2393 2524 -2 648 233 0 0 chr6 14270736 14270865 -168144377 + FLAM_A SINE Alu 10 138 -4 2158 108 69 83 chr6 14270865 14271298 -168143944 + MSTA LTR MaLR 2 428 0 2259 107 0 10 chr6 14271904 14272212 -168143030 - AluSg SINE Alu -5 305 1 440 253 11 81 chr6 14272465 14272651 -168142591 + MER5B DNA MER1_type 3 175 -3 1430 243 60 72 chr6 14272679 14273378 -168141864 - HAL1 LINE L1 -748 1759 1069 1537 264 85 51 chr6 14273381 14274286 -168140956 + L1MC4a LINE L1 4582 5454 -692 782 55 0 18 chr6 14274286 14274395 -168140847 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1496 104 5 14 chr6 14274397 14274609 -168140633 - AluSg/x SINE Alu -23 287 78 1537 264 85 51 chr6 14274609 14275025 -168140217 + L1MC4a LINE L1 5454 5362 -784 1697 168 30 40 chr6 14275025 14275328 -168139914 + AluSx SINE Alu 1 300 -12 1537 264 85 51 chr6 14275328 14275373 -168139869 + L1MC4a LINE L1 5361 5403 -743 362 304 182 12 chr6 14275494 14275747 -168139495 - MLT1J LTR MaLR -1 510 215 401 268 64 75 chr6 14275853 14276133 -168139109 - HAL1 LINE L1 -1613 894 618 249 189 0 0 chr6 14276278 14276315 -168138927 + MER20 DNA MER1_type 1 37 -182 485 146 212 66 chr6 14276318 14276469 -168138773 - MER53 DNA DNA -1 188 16 * 1026 204 32 0 chr6 14276464 14276650 -168138592 + MER20 DNA MER1_type 25 216 -3 2542 53 0 13 chr6 14278192 14278492 -168136750 + AluSc SINE Alu 1 296 -13 1393 148 27 46 chr6 14278577 14278840 -168136402 - AluJo SINE Alu -25 287 30 467 230 50 93 chr6 14278960 14279238 -168136004 - L1ME4a LINE L1 -229 5892 5627 606 272 17 35 chr6 14279894 14280067 -168135175 - L3b LINE CR1 -157 1426 1257 2007 120 57 0 chr6 14280194 14280477 -168134765 - AluSx SINE Alu -13 299 1 186 316 35 0 chr6 14281733 14281790 -168133452 - MIR SINE MIR -24 238 180 2573 181 45 11 chr6 14281803 14282266 -168132976 + LTR45B LTR ERV1 3 481 -8 479 296 0 52 chr6 14282270 14282405 -168132837 - MIR SINE MIR -104 158 31 1515 110 5 41 chr6 14332408 14332626 -168082616 + AluSq SINE Alu 94 303 -10 1645 151 12 47 chr6 14332636 14332955 -168082287 + AluJo SINE Alu 5 312 0 1036 69 0 0 chr6 14333227 14333358 -168081884 + AluSc SINE Alu 1 131 -178 27 0 0 0 chr6 14333358 14333385 -168081857 + AT_rich Low_complexity Low_complexity 1 27 0 1138 150 6 0 chr6 14333418 14333591 -168081651 + AluSg/x SINE Alu 131 304 -8 2500 166 31 9 chr6 14333672 14334125 -168081117 - MLT1C LTR MaLR -4 463 1 1811 140 7 7 chr6 14334333 14334604 -168080638 - AluSx SINE Alu -29 283 13 260 256 64 64 chr6 14334729 14334854 -168080388 - MIR SINE MIR -132 130 6 1747 104 0 90 chr6 14334983 14335272 -168079970 - AluSq SINE Alu -20 293 31 3695 169 107 39 chr6 14335272 14336574 -168078668 + pTR5 LTR ERV1 743 2438 0 2030 118 38 0 chr6 14337344 14337631 -168077611 + AluSx SINE Alu 1 298 -14 910 182 13 0 chr6 14337631 14337790 -168077452 + AluJb SINE Alu 134 294 -18 479 290 37 25 chr6 14337889 14338051 -168077191 + MIR3 SINE MIR 17 180 -28 210 206 0 0 chr6 14338081 14338144 -168077098 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2353 79 0 3 chr6 14338157 14338460 -168076782 + AluSx SINE Alu 1 302 -10 2029 105 51 3 chr6 14338726 14339021 -168076221 - AluSx SINE Alu -3 309 1 352 288 75 7 chr6 14339165 14339311 -168075931 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14339365 14339392 -168075850 + AT_rich Low_complexity Low_complexity 1 27 0 2701 213 73 47 chr6 14339472 14339752 -168075490 - L1ME2 LINE L1 -44 6120 5849 2187 113 0 0 chr6 14339752 14340060 -168075182 + AluSx SINE Alu 1 308 0 2701 213 73 47 chr6 14340060 14341174 -168074068 - L1ME2 LINE L1 -315 5849 4686 2408 88 3 0 chr6 14341174 14341480 -168073762 + AluSp SINE Alu 1 307 -6 2701 213 73 47 chr6 14341480 14341602 -168073640 - L1ME2 LINE L1 -1478 4686 4569 404 338 6 6 chr6 14341631 14341788 -168073454 - L1MEd LINE L1 -5367 752 596 2006 146 7 3 chr6 14342395 14342704 -168072538 - AluSg SINE Alu 0 310 1 183 80 0 0 chr6 14343000 14343025 -168072217 + (A)n Simple_repeat Simple_repeat 1 25 0 2275 91 3 10 chr6 14343199 14343495 -168071747 - AluSg SINE Alu -16 294 1 948 207 50 18 chr6 14343590 14343812 -168071430 - MIR SINE MIR -26 236 8 182 250 0 0 chr6 14344138 14344174 -168071068 - L2 LINE L2 -24 3289 3254 314 346 96 60 chr6 14346013 14346345 -168068897 - L2 LINE L2 0 3272 2929 257 275 30 131 chr6 14346334 14346503 -168068739 + MIR SINE MIR 20 169 -65 * 21 57 0 0 chr6 14346817 14346852 -168068390 + AT_rich Low_complexity Low_complexity 1 35 0 340 183 0 87 chr6 14348337 14348441 -168066801 - MIR SINE MIR -62 146 99 753 164 0 15 chr6 14348710 14348844 -168066398 + FLAM_C SINE Alu 1 132 -1 23 0 0 0 chr6 14349098 14349121 -168066121 + AT_rich Low_complexity Low_complexity 1 23 0 2195 86 0 17 chr6 14349348 14349639 -168065603 - AluSg SINE Alu -24 286 1 2745 134 125 15 chr6 14350494 14351039 -168064203 + L1MB3 LINE L1 5572 6176 -7 184 425 78 26 chr6 14351847 14352000 -168063242 - L2 LINE L2 -4 3268 3108 26 50 0 0 chr6 14352324 14352364 -168062878 + AT_rich Low_complexity Low_complexity 1 40 0 40 49 0 0 chr6 14352523 14352584 -168062658 + AT_rich Low_complexity Low_complexity 1 61 0 479 285 73 19 chr6 14355710 14355886 -168059356 - MIR SINE MIR -66 142 7 237 247 0 17 chr6 14356229 14356288 -168058954 - MIR3 SINE MIR -51 157 99 2160 122 3 0 chr6 14356289 14356600 -168058642 + AluSq SINE Alu 1 312 -1 304 358 44 0 chr6 14357158 14357295 -168057947 + L1MC/D LINE L1 5455 5597 -2211 477 243 77 12 chr6 14357419 14357588 -168057654 - MER104 DNA Tc2 0 180 1 1301 154 49 45 chr6 14358082 14358303 -168056939 - L1MB8 LINE L1 -65 6113 5889 2233 88 34 3 chr6 14358303 14358597 -168056645 - AluSc SINE Alu -4 305 3 1301 154 49 45 chr6 14358597 14358642 -168056600 - L1MB8 LINE L1 -289 5889 5846 286 119 0 0 chr6 14359003 14359045 -168056197 - L1MB8 LINE L1 -65 6113 6072 180 0 0 0 chr6 14359623 14359643 -168055599 + (A)n Simple_repeat Simple_repeat 1 20 0 691 248 95 0 chr6 14359871 14360093 -168055149 + L2 LINE L2 1710 1952 -1362 24 0 0 0 chr6 14360239 14360263 -168054979 + AT_rich Low_complexity Low_complexity 1 24 0 538 217 0 0 chr6 14360320 14360426 -168054816 - FLAM_C SINE Alu -1 142 37 479 194 71 10 chr6 14360606 14360704 -168054538 + HsTC2 DNA Tc2 43 146 -1752 279 238 69 29 chr6 14360782 14360925 -168054317 + HsTC2 DNA Tc2 1260 1591 -307 1245 150 0 5 chr6 14360925 14361118 -168054124 + AluJb SINE Alu 84 275 -37 944 221 80 23 chr6 14361121 14361420 -168053822 + HsTC2 DNA Tc2 1579 1894 -4 773 252 66 84 chr6 14361453 14361551 -168053691 + L2 LINE L2 2588 2686 -627 2436 65 0 19 chr6 14361551 14361861 -168053381 - AluY SINE Alu -7 304 1 773 252 66 84 chr6 14361861 14362501 -168052741 + L2 LINE L2 2686 3311 -2 308 288 40 71 chr6 14362967 14363165 -168052077 + MARNA DNA Mariner 27 218 -368 424 252 50 19 chr6 14363382 14363541 -168051701 + MARNA DNA Mariner 327 490 -96 255 291 101 50 chr6 14363635 14363814 -168051428 + MIR3 SINE MIR 20 207 -1 21 36 0 0 chr6 14363873 14363901 -168051341 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr6 14364136 14364195 -168051047 + AT_rich Low_complexity Low_complexity 1 59 0 683 226 113 15 chr6 14364759 14364963 -168050279 - MER58A DNA MER1_type 0 224 1 476 231 153 26 chr6 14365041 14365270 -168049972 - MIR SINE MIR -1 261 4 1933 143 16 7 chr6 14365351 14365658 -168049584 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr6 14365744 14365765 -168049477 + AT_rich Low_complexity Low_complexity 1 21 0 2130 124 0 3 chr6 14368488 14368794 -168046448 + AluSx SINE Alu 1 305 -7 456 19 0 0 chr6 14369404 14369457 -168045785 + (CA)n Simple_repeat Simple_repeat 1 53 0 403 311 92 13 chr6 14369851 14370166 -168045076 + L1 LINE L1 3919 4258 -1888 1388 206 7 22 chr6 14370393 14370669 -168044573 + AluJb SINE Alu 6 277 -35 449 312 88 18 chr6 14371917 14372305 -168042937 + HAL1 LINE L1 1370 1784 -723 349 250 92 32 chr6 14372349 14372601 -168042641 + L1ME2 LINE L1 1330 1722 -5225 1670 188 52 20 chr6 14372605 14372951 -168042291 + MLT1A1 LTR MaLR 1 357 -8 983 236 141 25 chr6 14372951 14373585 -168041657 + L1ME2 LINE L1 1717 2410 -4547 338 242 103 48 chr6 14373590 14373755 -168041487 + L1ME2 LINE L1 2583 2756 -4382 2137 269 94 7 chr6 14373838 14374667 -168040575 + L1ME2 LINE L1 4569 5469 -1488 1126 199 61 0 chr6 14374663 14374925 -168040317 + L1MA4 LINE L1 6018 6295 -5 * 2995 246 47 20 chr6 14374940 14376290 -168038952 + L1ME2 LINE L1 5454 6964 -11 1147 157 106 75 chr6 14376647 14376940 -168038302 + AluJb SINE Alu 1 302 0 1457 143 30 158 chr6 14377641 14378034 -168037208 + Tigger3(Golem) DNA MER2_type 1 3023 -6 6707 208 65 40 chr6 14378061 14379748 -168035494 + L1MB7 LINE L1 3836 5479 -1516 1506 174 20 33 chr6 14379748 14380053 -168035189 - AluJb SINE Alu -9 303 3 6707 208 65 40 chr6 14380053 14380169 -168035073 + L1MB7 LINE L1 5479 5591 -1404 1820 178 0 10 chr6 14380169 14380467 -168034775 + AluSx SINE Alu 1 295 -17 6707 208 65 40 chr6 14380467 14380676 -168034566 + L1MB7 LINE L1 5591 5793 -1202 2410 81 0 13 chr6 14380676 14380983 -168034259 + AluY SINE Alu 1 303 -8 6707 208 65 40 chr6 14380983 14381966 -168033276 + L1MB7 LINE L1 5793 6995 0 706 277 162 9 chr6 14381957 14382376 -168032866 + L1MCa LINE L1 140 622 -5942 * 2243 215 147 26 chr6 14382369 14383968 -168031274 + L1MCa LINE L1 498 2535 -4029 1881 154 20 3 chr6 14383968 14384260 -168030982 + AluJb SINE Alu 1 297 -15 2243 215 147 26 chr6 14384260 14384630 -168030612 + L1MCa LINE L1 2535 2859 -3705 3335 109 4 30 chr6 14384642 14385135 -168030107 + LTR3b LTR ERVK 21 500 0 2707 242 85 30 chr6 14385138 14385801 -168029441 + L1MCa LINE L1 2864 3603 -2961 216 0 0 0 chr6 14385801 14385825 -168029417 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2707 242 85 30 chr6 14385825 14386178 -168029064 + L1MCa LINE L1 3603 3935 -2629 275 220 17 0 chr6 14386227 14386286 -168028956 + L1MC4a LINE L1 6624 6683 -1125 3695 221 29 62 chr6 14386426 14387569 -168027673 + L1MCa LINE L1 3867 4971 -1593 1830 181 3 3 chr6 14387997 14388296 -168026946 + AluJb SINE Alu 1 299 -13 1462 228 67 13 chr6 14388577 14388963 -168026279 + MER74B LTR ERVL 139 545 -77 25 0 0 0 chr6 14389768 14389793 -168025449 + AT_rich Low_complexity Low_complexity 1 25 0 336 210 16 0 chr6 14390241 14390303 -168024939 + U7 snRNA snRNA 1 63 0 325 289 218 30 chr6 14390306 14390617 -168024625 + HAL1b LINE L1 98 349 -999 1761 161 0 55 chr6 14390617 14390946 -168024296 + AluJb SINE Alu 1 311 -1 325 289 218 30 chr6 14390946 14391239 -168024003 + HAL1b LINE L1 349 816 -532 1078 196 107 38 chr6 14391252 14391569 -168023673 + L1ME1 LINE L1 5811 6149 -17 313 187 27 27 chr6 14391909 14391984 -168023258 + L1MC4a LINE L1 5957 6031 -1777 2144 114 7 10 chr6 14392022 14392321 -168022921 - AluSx SINE Alu -12 300 3 326 261 142 60 chr6 14392327 14392545 -168022697 + L1MC4a LINE L1 6108 6343 -1465 24 0 0 0 chr6 14392551 14392575 -168022667 + AT_rich Low_complexity Low_complexity 1 24 0 1816 115 7 11 chr6 14392618 14392887 -168022355 - AluSq SINE Alu -19 294 27 271 295 60 20 chr6 14393029 14393178 -168022064 + L1MC4 LINE L1 7872 8026 -16 350 200 47 118 chr6 14393760 14393930 -168021312 + L1ME4a LINE L1 5964 6121 0 367 267 43 35 chr6 14394293 14394409 -168020833 - L2 LINE L2 -4 3309 3193 206 359 148 0 chr6 14394798 14394926 -168020316 - L2 LINE L2 -10 3262 3116 576 228 56 41 chr6 14395218 14395418 -168019824 + L1ME LINE L1 5543 5662 -459 882 162 6 62 chr6 14395565 14395744 -168019498 + AluJo SINE Alu 114 282 -30 2307 88 0 10 chr6 14395809 14396105 -168019137 + AluSc SINE Alu 1 293 -16 22 0 0 0 chr6 14396262 14396284 -168018958 + GC_rich Low_complexity Low_complexity 1 22 0 1682 170 18 0 chr6 14396284 14396441 -168018801 - AluJo SINE Alu -30 282 116 2204 112 7 3 chr6 14396441 14396746 -168018496 - AluSx SINE Alu -6 306 1 1682 170 18 0 chr6 14396746 14396865 -168018377 - AluJo SINE Alu -196 116 1 270 318 100 6 chr6 14397234 14397404 -168017838 + L2 LINE L2 2090 2275 -1039 1055 124 6 19 chr6 14397503 14397664 -168017578 + FRAM SINE Alu 1 159 -17 266 71 0 24 chr6 14398120 14398162 -168017080 + (CAG)n Simple_repeat Simple_repeat 1 41 0 317 248 223 25 chr6 14398220 14398377 -168016865 - MIR SINE MIR -18 244 57 283 321 12 111 chr6 14398647 14398809 -168016433 + L2 LINE L2 3107 3252 -20 1475 177 23 35 chr6 14399034 14399344 -168015898 + AluJo SINE Alu 3 308 -4 1978 152 3 10 chr6 14399426 14399735 -168015507 - AluSx SINE Alu -5 307 1 691 203 31 0 chr6 14400148 14400276 -168014966 + Tigger3(Golem) DNA MER2_type 2897 3028 -1 2086 127 13 7 chr6 14401045 14401344 -168013898 + AluSx SINE Alu 1 301 -11 29 0 0 0 chr6 14401389 14401418 -168013824 + AT_rich Low_complexity Low_complexity 1 29 0 1833 123 22 7 chr6 14401807 14402120 -168013122 - AluSg SINE Alu 0 318 2 2192 96 30 0 chr6 14402415 14402716 -168012526 + AluSq SINE Alu 1 310 -3 2208 118 0 3 chr6 14402731 14403035 -168012207 + AluSx SINE Alu 1 303 -9 708 151 66 20 chr6 14403468 14403620 -168011622 + L1ME1 LINE L1 5392 5550 -616 1047 117 0 7 chr6 14403626 14403780 -168011462 + AluSq SINE Alu 1 153 -160 2308 112 0 0 chr6 14403922 14404234 -168011008 + AluSx SINE Alu 1 312 0 1950 222 75 10 chr6 14404240 14404722 -168010520 + L1ME1 LINE L1 5543 6055 -111 1433 179 18 47 chr6 14404724 14404998 -168010244 + Tigger7 DNA MER2_type 2 267 -466 658 149 0 0 chr6 14404999 14405093 -168010149 + Tigger7 DNA MER2_type 2390 2483 -4 412 224 35 26 chr6 14405094 14405210 -168010032 + L1ME1 LINE L1 6050 6166 0 216 0 0 0 chr6 14405563 14405587 -168009655 + (T)n Simple_repeat Simple_repeat 1 24 0 338 299 142 8 chr6 14405597 14405731 -168009511 - L2 LINE L2 -962 2352 2201 273 314 6 63 chr6 14406228 14406387 -168008855 + MER5B DNA MER1_type 4 153 -25 21 0 0 0 chr6 14408559 14408580 -168006662 + AT_rich Low_complexity Low_complexity 1 21 0 730 207 73 69 chr6 14408801 14409047 -168006195 - MIR SINE MIR 0 262 16 21 0 0 0 chr6 14409499 14409520 -168005722 + AT_rich Low_complexity Low_complexity 1 21 0 1058 158 163 5 chr6 14409594 14409742 -168005500 - MER46A DNA MER2_type -2495 236 46 2152 120 10 0 chr6 14409742 14410041 -168005201 + AluSx SINE Alu 1 302 -10 1058 158 163 5 chr6 14410041 14410095 -168005147 - MER46A DNA MER2_type -2685 46 2 241 347 127 41 chr6 14410511 14410756 -168004486 + L2 LINE L2 2826 3091 -181 2099 123 10 3 chr6 14411652 14411960 -168003282 + AluSx SINE Alu 1 310 -2 1640 109 0 0 chr6 14412322 14412533 -168002709 + AluSq SINE Alu 1 211 -102 542 297 63 18 chr6 14412884 14413170 -168002072 + L2 LINE L2 1698 1996 -1318 793 233 7 7 chr6 14413189 14413335 -168001907 - AluJb SINE Alu -27 285 140 333 321 79 21 chr6 14413400 14413590 -168001652 + L2 LINE L2 2100 2300 -1014 365 373 115 16 chr6 14414138 14414503 -168000739 + L2 LINE L2 2407 2807 -507 1847 164 0 10 chr6 14414507 14414811 -168000431 + AluJb SINE Alu 1 301 -11 190 328 113 55 chr6 14414914 14415225 -168000017 + L2 LINE L2 2943 3271 -1 2205 127 0 10 chr6 14415283 14415597 -167999645 + AluSx SINE Alu 1 311 -1 2312 71 0 26 chr6 14415741 14416052 -167999190 + AluY SINE Alu 1 303 -8 2172 82 0 3 chr6 14416239 14416521 -167998721 + AluY SINE Alu 17 297 -14 2336 84 0 10 chr6 14416574 14416871 -167998371 + AluSc SINE Alu 1 294 -15 2123 109 13 26 chr6 14416881 14417185 -167998057 + AluSx SINE Alu 1 300 -12 1652 135 90 11 chr6 14417209 14417476 -167997766 - AluJo SINE Alu -20 292 5 1569 209 3 17 chr6 14418301 14418588 -167996654 + AluJb SINE Alu 1 283 -19 252 0 0 0 chr6 14418981 14419009 -167996233 + (CA)n Simple_repeat Simple_repeat 1 28 0 310 292 0 10 chr6 14419380 14419476 -167995766 - MIR3 SINE MIR 0 208 114 22 0 0 0 chr6 14419585 14419607 -167995635 + AT_rich Low_complexity Low_complexity 1 22 0 321 292 82 47 chr6 14421302 14421473 -167993769 - L1M2 LINE L1 -6038 811 635 213 39 0 0 chr6 14421595 14421612 -167993630 + (CTG)n Simple_repeat Simple_repeat 1 43 0 213 39 0 0 chr6 14421612 14421638 -167993604 + (CTG)n Simple_repeat Simple_repeat 3 28 0 211 257 9 53 chr6 14421839 14421952 -167993290 + G-rich Low_complexity Low_complexity 6 113 0 254 167 37 74 chr6 14422003 14422111 -167993131 + (CGGGG)n Simple_repeat Simple_repeat 5 108 0 186 43 0 0 chr6 14423261 14423284 -167991958 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2027 99 8 0 chr6 14423285 14423548 -167991694 - AluSx SINE Alu -47 265 1 249 257 52 81 chr6 14423935 14424071 -167991171 + L1ME LINE L1 5494 5625 -496 205 133 0 0 chr6 14424338 14424368 -167990874 - MER91 DNA MER1_type -36 160 131 515 277 74 7 chr6 14424757 14424905 -167990337 - LTR67 LTR ERVL 0 557 400 2247 219 81 20 chr6 14425463 14426006 -167989236 - MLT1E LTR MaLR 0 593 18 1231 217 14 0 chr6 14426095 14426316 -167988926 - MER58A DNA MER1_type 0 224 1 4610 166 63 39 chr6 14426739 14428253 -167986989 + pTR5 LTR ERV1 742 2438 0 2104 162 22 11 chr6 14428254 14428618 -167986624 + THE1C LTR MaLR 8 375 0 1029 189 71 89 chr6 14428636 14428986 -167986256 + MER2 DNA MER2_type 1 344 0 327 291 0 25 chr6 14429029 14429108 -167986134 - MER5A DNA MER1_type -95 94 18 1458 170 22 11 chr6 14429138 14429409 -167985833 - AluJo SINE Alu -38 274 1 1831 150 3 17 chr6 14429931 14430231 -167985011 - AluJo SINE Alu -16 296 1 846 134 0 0 chr6 14430285 14430404 -167984838 + FLAM_C SINE Alu 1 119 -24 207 0 0 0 chr6 14430405 14430428 -167984814 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2251 93 28 0 chr6 14430439 14430730 -167984512 + AluSg SINE Alu 1 299 -11 238 278 0 14 chr6 14430930 14431002 -167984240 + A-rich Low_complexity Low_complexity 5 75 0 240 289 99 92 chr6 14431119 14431261 -167983981 - L2 LINE L2 -1 3271 3129 2053 118 35 0 chr6 14431320 14431609 -167983633 - AluSq SINE Alu -14 299 1 2415 88 0 0 chr6 14432040 14432346 -167982896 + AluSg SINE Alu 1 306 -4 2063 117 0 7 chr6 14432849 14433148 -167982094 + AluSx SINE Alu 1 297 -15 1641 198 118 32 chr6 14433294 14433759 -167981483 + MLT1D LTR MaLR 1 505 0 1131 271 89 26 chr6 14434297 14434722 -167980520 - LTR16A1 LTR ERVL 0 457 6 2126 127 3 0 chr6 14434729 14435028 -167980214 - AluSx SINE Alu -12 300 1 359 292 0 10 chr6 14435565 14435661 -167979581 - MER102b DNA MER1_type 0 341 247 2466 59 0 0 chr6 14436156 14436462 -167978780 + AluY SINE Alu 1 306 -5 3541 143 28 69 chr6 14436499 14436779 -167978463 + L1MB8 LINE L1 5482 5772 -406 1741 136 32 4 chr6 14436779 14437058 -167978184 + AluJb SINE Alu 1 287 -25 3541 143 28 69 chr6 14437058 14437499 -167977743 + L1MB8 LINE L1 5772 6173 -5 297 215 13 38 chr6 14437564 14437643 -167977599 + L2 LINE L2 3234 3310 -3 197 256 0 0 chr6 14437757 14437796 -167977446 + L2 LINE L2 3215 3253 -19 316 119 107 6 chr6 14438003 14438087 -167977155 - MER5A DNA MER1_type 0 189 47 25 0 0 0 chr6 14438105 14438130 -167977112 + AT_rich Low_complexity Low_complexity 1 25 0 2437 207 79 2 chr6 14438180 14439154 -167976088 - L1MC4 LINE L1 -143 7899 6691 2224 231 60 33 chr6 14439156 14439530 -167975712 - MLT1E LTR MaLR 0 593 231 1870 122 7 11 chr6 14439530 14439809 -167975433 + AluJb SINE Alu 13 290 -22 2155 121 0 0 chr6 14439814 14440120 -167975122 + AluSx SINE Alu 1 306 -6 2224 231 60 33 chr6 14440120 14440304 -167974938 - MLT1E LTR MaLR -365 228 15 643 221 43 0 chr6 14440390 14440553 -167974689 - L1MC4 LINE L1 -1372 6670 6501 300 237 17 0 chr6 14440553 14440612 -167974630 + L1MCa LINE L1 2005 2064 -4362 * 351 247 115 77 chr6 14440569 14440666 -167974576 - L1MC4 LINE L1 -1339 6703 6611 1501 131 5 0 chr6 14440666 14440888 -167974354 - AluSg/x SINE Alu -13 297 75 351 247 115 77 chr6 14440888 14440972 -167974270 - L1MC4 LINE L1 -1431 6611 6515 1902 138 24 0 chr6 14441714 14442010 -167973232 - AluSq SINE Alu -10 303 1 2241 93 0 0 chr6 14442816 14443107 -167972135 + AluSx SINE Alu 1 291 -21 288 77 0 0 chr6 14443697 14443736 -167971506 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr6 14443890 14443914 -167971328 + (T)n Simple_repeat Simple_repeat 1 24 0 312 261 116 58 chr6 14444281 14444419 -167970823 + MIR3 SINE MIR 2 147 -61 1415 162 41 48 chr6 14444683 14444936 -167970306 + L1MB4 LINE L1 5887 6139 -41 1675 185 0 7 chr6 14444936 14445233 -167970009 + AluJb SINE Alu 1 295 -17 1415 162 41 48 chr6 14445233 14445269 -167969973 + L1MB4 LINE L1 6139 6174 -6 490 271 20 13 chr6 14445304 14445455 -167969787 + L1MC4a LINE L1 5771 5922 -1886 786 224 0 12 chr6 14445463 14445624 -167969618 - MIR SINE MIR -43 219 61 2150 109 0 6 chr6 14445627 14445939 -167969303 - AluSg SINE Alu 0 310 1 529 239 168 7 chr6 14445970 14446125 -167969117 + MER5A DNA MER1_type 4 183 -6 2365 67 0 13 chr6 14446431 14446746 -167968496 - AluY SINE Alu 0 311 1 292 189 0 0 chr6 14447216 14447269 -167967973 + MIR SINE MIR 100 152 -110 337 87 0 0 chr6 14447305 14447351 -167967891 + MER91B DNA MER1_type 18 63 -127 330 282 0 0 chr6 14447384 14447469 -167967773 + MIR SINE MIR 168 252 -10 1074 75 0 0 chr6 14447732 14447866 -167967376 + AluSq/x SINE Alu 1 134 -179 623 299 49 20 chr6 14447892 14448136 -167967106 + MIR SINE MIR 12 262 0 2243 105 0 0 chr6 14448525 14448831 -167966411 - AluSx SINE Alu -6 306 1 2191 96 7 0 chr6 14448842 14449145 -167966097 - AluSp SINE Alu -7 306 2 26 0 0 0 chr6 14449558 14449584 -167965658 + AT_rich Low_complexity Low_complexity 1 26 0 399 289 10 0 chr6 14449584 14449681 -167965561 - L1MC4 LINE L1 -1339 6703 6606 31 96 0 0 chr6 14449731 14449825 -167965417 + AT_rich Low_complexity Low_complexity 1 94 0 1946 119 10 0 chr6 14449881 14450174 -167965068 - AluSx SINE Alu -16 296 1 2177 100 3 29 chr6 14450242 14450552 -167964690 + AluSq SINE Alu 2 303 -10 1498 144 13 48 chr6 14450568 14450881 -167964361 + AluJo SINE Alu 11 312 0 30 0 0 0 chr6 14450921 14450951 -167964291 + AT_rich Low_complexity Low_complexity 1 30 0 1915 107 3 57 chr6 14451153 14451298 -167963944 + AluSc SINE Alu 1 121 -188 261 57 0 0 chr6 14451298 14451333 -167963909 + (TA)n Simple_repeat Simple_repeat 1 35 0 1915 107 3 57 chr6 14451333 14451505 -167963737 + AluSc SINE Alu 121 301 -8 2554 170 31 7 chr6 14451585 14452037 -167963205 - MLT1C LTR MaLR -4 463 1 1711 140 7 7 chr6 14452245 14452516 -167962726 - AluSx SINE Alu -29 283 13 284 256 64 64 chr6 14452641 14452766 -167962476 - MIR SINE MIR -132 130 6 1668 104 0 90 chr6 14452895 14453184 -167962058 - AluSq SINE Alu -20 293 31 3968 167 107 39 chr6 14453184 14454487 -167960755 + pTR5 LTR ERV1 743 2438 0 1958 115 38 0 chr6 14455259 14455546 -167959696 + AluSx SINE Alu 1 298 -14 858 182 13 0 chr6 14455546 14455705 -167959537 + AluJb SINE Alu 134 294 -18 482 287 40 29 chr6 14455804 14455978 -167959264 + MIR3 SINE MIR 17 192 -16 210 206 0 0 chr6 14455996 14456059 -167959183 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2184 92 0 3 chr6 14456072 14456365 -167958877 + AluSq SINE Alu 1 292 -21 2084 102 0 3 chr6 14456616 14456900 -167958342 - AluSc SINE Alu -20 289 7 467 284 22 40 chr6 14456955 14457177 -167958065 - L1MC/D LINE L1 -2287 5521 5304 434 204 35 56 chr6 14457345 14457487 -167957755 + MER58C DNA MER1_type 67 205 -10 2109 39 0 4 chr6 14457652 14457909 -167957333 + AluY SINE Alu 46 301 -10 1969 102 51 3 chr6 14458175 14458470 -167956772 - AluSx SINE Alu -3 309 1 377 288 75 7 chr6 14458614 14458760 -167956482 - MIR3 SINE MIR -50 158 3 27 0 0 0 chr6 14458814 14458841 -167956401 + AT_rich Low_complexity Low_complexity 1 27 0 2752 221 44 59 chr6 14458921 14459201 -167956041 - L1ME2 LINE L1 -44 6120 5837 2095 113 0 0 chr6 14459201 14459521 -167955721 + AluSx SINE Alu 1 320 0 2752 221 44 59 chr6 14459521 14460119 -167955123 - L1ME2 LINE L1 -327 5837 5254 2235 220 33 22 chr6 14460146 14460623 -167954619 - L1ME2 LINE L1 -971 5175 4688 2332 88 3 0 chr6 14460623 14460930 -167954312 + AluSp SINE Alu 1 308 -5 2235 220 33 22 chr6 14460930 14461052 -167954190 - L1ME2 LINE L1 -1458 4688 4569 385 319 19 19 chr6 14461081 14461238 -167954004 - L1MEd LINE L1 -5367 752 596 2125 120 0 13 chr6 14461845 14462161 -167953081 - AluSx SINE Alu 0 312 1 215 280 200 32 chr6 14462229 14462354 -167952888 + MER5A DNA MER1_type 21 166 -23 * 516 242 174 8 chr6 14462247 14462379 -167952863 - MER5A DNA MER1_type -26 163 10 442 88 0 0 chr6 14462404 14462461 -167952781 + AluSg/x SINE Alu 156 212 -100 1755 111 8 11 chr6 14462462 14462715 -167952527 + AluSx SINE Alu 32 285 -27 210 71 0 0 chr6 14462715 14462743 -167952499 + (TAAAG)n Simple_repeat Simple_repeat 2 29 0 2168 106 0 3 chr6 14462824 14463125 -167952117 - AluSg SINE Alu -10 300 1 1991 91 10 49 chr6 14463966 14464274 -167950968 - AluSx SINE Alu -16 296 1 594 249 158 39 chr6 14464285 14464570 -167950672 - L2 LINE L2 -5 3308 2990 22 0 0 0 chr6 14464739 14464761 -167950481 + AT_rich Low_complexity Low_complexity 1 22 0 329 217 57 74 chr6 14464841 14464989 -167950253 - L2 LINE L2 -207 3065 2923 1600 260 114 41 chr6 14465926 14466055 -167949187 + L2 LINE L2 1710 1828 -1486 2064 119 0 3 chr6 14466055 14466211 -167949031 - AluSx SINE Alu -20 292 136 2357 72 0 0 chr6 14466211 14466504 -167948738 - AluSc SINE Alu -16 293 1 2064 119 0 3 chr6 14466504 14466640 -167948602 - AluSx SINE Alu -176 136 1 1600 260 114 41 chr6 14466640 14466967 -167948275 + L2 LINE L2 1828 2130 -1184 1633 149 31 76 chr6 14466967 14467054 -167948188 + MER44D DNA MER2_type 1 90 -2401 1948 106 27 20 chr6 14467054 14467182 -167948060 + AluSx SINE Alu 1 127 -185 2063 132 0 3 chr6 14467182 14467492 -167947750 + AluSg1 SINE Alu 1 309 0 1948 106 27 20 chr6 14467492 14467655 -167947587 + AluSx SINE Alu 127 294 -18 1633 149 31 76 chr6 14467655 14467922 -167947320 + MER44D DNA MER2_type 90 609 0 1600 260 114 41 chr6 14467922 14468103 -167947139 + L2 LINE L2 2130 2395 -919 2717 158 32 29 chr6 14468105 14468478 -167946764 + MLT1D LTR MaLR 12 390 -115 1251 138 142 58 chr6 14468478 14468778 -167946464 - AluSx SINE Alu 0 324 3 2717 158 32 29 chr6 14468778 14468895 -167946347 + MLT1D LTR MaLR 390 505 0 1471 279 55 4 chr6 14468895 14469368 -167945874 + L2 LINE L2 2392 2888 -426 1108 251 47 33 chr6 14469395 14469754 -167945488 + LTR16A LTR ERVL 67 430 -20 1110 297 58 20 chr6 14469767 14470161 -167945081 + L2 LINE L2 2883 3291 -22 323 323 22 9 chr6 14470598 14470741 -167944501 + MIR SINE MIR 34 179 -62 2129 81 3 3 chr6 14472153 14472564 -167942678 - AluSq SINE Alu 0 411 1 354 23 0 0 chr6 14473343 14473386 -167941856 + (CA)n Simple_repeat Simple_repeat 2 44 0 1071 255 63 94 chr6 14474071 14474624 -167940618 + MLT1F LTR MaLR 7 542 0 1976 110 65 0 chr6 14474646 14474937 -167940305 - AluSg SINE Alu 0 310 1 2334 86 0 10 chr6 14474939 14475252 -167939990 - AluSx SINE Alu -2 310 1 628 184 97 92 chr6 14475367 14475465 -167939777 + MER5A DNA MER1_type 2 103 -86 2079 87 0 63 chr6 14475465 14475797 -167939445 + AluY SINE Alu 1 311 0 628 184 97 92 chr6 14475797 14475883 -167939359 + MER5A DNA MER1_type 103 187 -2 240 190 0 69 chr6 14475887 14475924 -167939318 + MLT1L LTR MaLR 148 181 -434 3154 110 131 8 chr6 14475924 14476452 -167938790 - LTR59 LTR ERV1 -4 593 1 240 190 0 69 chr6 14476452 14476472 -167938770 + MLT1L LTR MaLR 181 201 -414 600 270 128 18 chr6 14476552 14476778 -167938464 + MLT1L LTR MaLR 365 615 0 2088 117 0 3 chr6 14476849 14477148 -167938094 - AluSx SINE Alu -14 298 1 2107 122 3 0 chr6 14478183 14478494 -167936748 - AluSx SINE Alu 0 312 1 696 241 121 0 chr6 14478494 14478660 -167936582 - MIR SINE MIR -62 200 15 1611 141 39 33 chr6 14478802 14479108 -167936134 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr6 14479149 14479172 -167936070 + AT_rich Low_complexity Low_complexity 1 23 0 543 101 0 0 chr6 14479195 14479274 -167935968 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 646 130 123 43 chr6 14479275 14479413 -167935829 - AluJb SINE Alu -21 291 143 1056 163 13 53 chr6 14480200 14480427 -167934815 - AluJo SINE Alu -8 304 87 2141 113 0 6 chr6 14480545 14480856 -167934386 - AluSq SINE Alu -4 309 1 251 222 42 42 chr6 14481022 14481094 -167934148 + MIR3 SINE MIR 111 182 -26 1173 170 24 32 chr6 14481148 14481395 -167933847 - L1MB8 LINE L1 0 6178 5934 2130 104 10 0 chr6 14481429 14481728 -167933514 + AluSx SINE Alu 1 302 -10 2150 93 10 0 chr6 14482095 14482396 -167932846 + AluSq SINE Alu 1 304 -9 4523 147 58 86 chr6 14482476 14483773 -167931469 + pTR5 LTR ERV1 743 2296 -142 1168 190 40 12 chr6 14483784 14484037 -167931205 + AluJb SINE Alu 31 290 -22 1922 128 3 7 chr6 14484476 14484773 -167930469 - AluSg SINE Alu -14 296 1 538 196 30 200 chr6 14484859 14484950 -167930292 + MIR SINE MIR 31 136 -126 2199 129 0 0 chr6 14484950 14485260 -167929982 - AluSx SINE Alu -2 310 1 538 196 30 200 chr6 14485260 14485283 -167929959 + MIR SINE MIR 136 161 -101 829 164 0 50 chr6 14485283 14485423 -167929819 - FLAM_C SINE Alu 0 133 1 538 196 30 200 chr6 14485423 14485542 -167929700 + MIR SINE MIR 161 225 -37 1881 108 7 58 chr6 14485542 14485837 -167929405 + AluSg SINE Alu 1 280 -30 183 42 0 0 chr6 14485841 14485865 -167929377 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1728 167 16 13 chr6 14485875 14486181 -167929061 + AluJb SINE Alu 1 307 -5 1679 159 60 63 chr6 14486269 14486407 -167928835 + MLT1A1 LTR MaLR 1 138 -227 2647 30 0 0 chr6 14486407 14486705 -167928537 + AluY SINE Alu 1 298 -13 1679 159 60 63 chr6 14486705 14486931 -167928311 + MLT1A1 LTR MaLR 138 364 -1 237 296 120 19 chr6 14486933 14487041 -167928201 - MIR3 SINE MIR -87 121 3 2563 86 0 0 chr6 14487252 14487565 -167927677 - AluSq SINE Alu 0 313 1 819 167 0 0 chr6 14487577 14487715 -167927527 - FRAM SINE Alu 0 176 39 1463 94 0 49 chr6 14487738 14487962 -167927280 - AluY SINE Alu -12 299 87 1026 187 128 0 chr6 14487999 14488202 -167927040 + LTR39 LTR ERV1 555 783 0 3640 169 75 58 chr6 14488711 14488798 -167926444 - LTR39 LTR ERV1 0 783 699 1751 113 0 4 chr6 14488798 14489045 -167926197 - AluSx SINE Alu -10 302 57 3640 169 75 58 chr6 14489045 14489518 -167925724 - LTR39 LTR ERV1 -84 699 235 2232 113 7 0 chr6 14489518 14489819 -167925423 - AluSx SINE Alu -9 303 1 3640 169 75 58 chr6 14489819 14489937 -167925305 - LTR39 LTR ERV1 -548 235 120 2316 102 0 0 chr6 14489937 14490242 -167925000 - AluSx SINE Alu -7 305 1 3640 169 75 58 chr6 14490242 14490331 -167924911 - LTR39 LTR ERV1 -663 120 1 1025 132 18 12 chr6 14490395 14490562 -167924680 + HSMAR2 DNA Mariner 1 168 -1134 2400 92 0 7 chr6 14490569 14490872 -167924370 + AluSg SINE Alu 2 302 -8 1085 151 0 6 chr6 14490872 14491044 -167924198 + AluJb SINE Alu 134 304 -8 758 164 0 9 chr6 14491049 14491165 -167924077 + FLAM_C SINE Alu 2 116 -27 1646 108 24 12 chr6 14491194 14491217 -167924025 + HSMAR2 DNA Mariner 1051 1072 -230 1700 175 19 7 chr6 14491217 14491525 -167923717 + AluJb SINE Alu 1 312 0 1646 108 24 12 chr6 14491525 14491750 -167923492 + HSMAR2 DNA Mariner 1072 1302 0 2245 126 0 0 chr6 14491794 14492103 -167923139 - AluJb SINE Alu -3 309 1 2017 101 73 0 chr6 14492111 14492397 -167922845 - AluSx SINE Alu -5 307 1 551 264 40 102 chr6 14492796 14493118 -167922124 + MLT1L LTR MaLR 207 508 -107 2133 114 0 10 chr6 14493309 14493606 -167921636 - AluSg SINE Alu -16 294 1 233 29 29 0 chr6 14494004 14494038 -167921204 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2498 74 0 7 chr6 14494410 14494720 -167920522 + AluSx SINE Alu 1 308 -4 2344 93 10 0 chr6 14494732 14495034 -167920208 + AluSq SINE Alu 9 313 0 848 144 0 0 chr6 14495340 14495458 -167919784 - FLAM_C SINE Alu -13 120 3 253 225 28 70 chr6 14495868 14495939 -167919303 + MLT1K LTR MaLR 486 553 -35 2063 135 0 0 chr6 14495957 14496254 -167918988 - AluJb SINE Alu -15 297 1 1761 144 13 39 chr6 14496282 14496594 -167918648 + AluJb SINE Alu 1 304 -8 1890 118 0 67 chr6 14498029 14498343 -167916899 - AluSx SINE Alu -18 294 2 21 0 0 0 chr6 14498691 14498712 -167916530 + AT_rich Low_complexity Low_complexity 1 21 0 2255 92 3 0 chr6 14499282 14499575 -167915667 + AluSg SINE Alu 1 294 -16 2190 83 38 3 chr6 14500626 14500914 -167914328 - AluSx SINE Alu -14 298 1 1004 171 46 37 chr6 14501193 14501409 -167913833 - AluJo SINE Alu -8 304 87 693 209 40 40 chr6 14501790 14501967 -167913275 - MER104 DNA MER2_type -3 177 1 347 238 30 50 chr6 14502266 14502367 -167912875 + MIR SINE MIR 43 141 -67 847 128 149 0 chr6 14503167 14503315 -167911927 + AluSg/x SINE Alu 138 307 -2 2871 151 61 8 chr6 14503417 14503941 -167911301 + L1MB3 LINE L1 5631 6182 -1 811 181 0 0 chr6 14504275 14504408 -167910834 - FLAM_C SINE Alu -4 139 7 819 130 0 22 chr6 14504800 14504938 -167910304 - AluSc SINE Alu -2 307 173 264 154 0 0 chr6 14505285 14505337 -167909905 + A-rich Low_complexity Low_complexity 1 52 0 1555 92 23 5 chr6 14505836 14506054 -167909188 + L1PB1 LINE L1 5928 6149 -2 2351 104 7 0 chr6 14506439 14506746 -167908496 - AluSx SINE Alu -2 310 2 21 0 0 0 chr6 14506917 14506938 -167908304 + AT_rich Low_complexity Low_complexity 1 21 0 2518 62 0 0 chr6 14507588 14507893 -167907349 + AluY SINE Alu 1 305 -6 2117 135 3 0 chr6 14507903 14508214 -167907028 + AluSx SINE Alu 1 312 0 2249 92 0 13 chr6 14508258 14508561 -167906681 - AluSq SINE Alu -14 299 1 29 47 0 0 chr6 14508587 14508630 -167906612 + AT_rich Low_complexity Low_complexity 1 43 0 2137 122 3 0 chr6 14509349 14509644 -167905598 - AluSg SINE Alu -14 296 1 2415 91 10 0 chr6 14509984 14510292 -167904950 - AluSq SINE Alu -2 311 1 229 230 13 27 chr6 14511012 14511113 -167904129 + L1ME3 LINE L1 5666 5765 -397 592 270 94 4 chr6 14511171 14511404 -167903838 + L1ME3 LINE L1 5902 6155 -7 1879 151 0 31 chr6 14511729 14512048 -167903194 + AluJb SINE Alu 1 309 -3 328 291 10 10 chr6 14512747 14512850 -167902392 + L1ME4a LINE L1 5808 5910 -211 2337 85 3 0 chr6 14513227 14513522 -167901720 - AluSp SINE Alu -17 296 1 777 143 27 0 chr6 14514013 14514125 -167901117 + AluJb SINE Alu 2 116 -196 36 23 0 0 chr6 14514126 14514169 -167901073 + AT_rich Low_complexity Low_complexity 1 43 0 2226 128 0 6 chr6 14514202 14514514 -167900728 + AluSx SINE Alu 3 312 0 2500 50 0 50 chr6 14514654 14514976 -167900266 + AluY SINE Alu 1 306 -5 955 118 0 15 chr6 14515318 14515453 -167899789 - FLAM_C SINE Alu 0 133 1 210 307 72 36 chr6 14515604 14515770 -167899472 - MIR SINE MIR -56 206 35 2427 84 7 0 chr6 14516135 14516443 -167898799 + AluSg SINE Alu 1 310 0 1036 160 12 0 chr6 14516789 14516958 -167898284 + AluJb SINE Alu 120 290 -22 4167 159 64 93 chr6 14517307 14518114 -167897128 - L1MB8 LINE L1 -1 6177 5347 1726 183 101 25 chr6 14518114 14518481 -167896761 + MSTD LTR MaLR 2 396 0 4167 159 64 93 chr6 14518481 14519089 -167896153 - L1MB8 LINE L1 -831 5347 4730 593 154 0 39 chr6 14519089 14519193 -167896049 - FRAM SINE Alu -3 173 74 4167 159 64 93 chr6 14519193 14519424 -167895818 - L1MB8 LINE L1 -1448 4730 4494 557 187 0 0 chr6 14519466 14519573 -167895669 - L1MB8 LINE L1 -2367 3779 3673 1824 158 0 33 chr6 14519773 14520076 -167895166 + AluJo SINE Alu 1 293 -19 2281 96 0 0 chr6 14520084 14520375 -167894867 + AluSg SINE Alu 1 291 -19 231 337 116 0 chr6 14521399 14521494 -167893748 + L2 LINE L2 3137 3242 -30 348 269 54 130 chr6 14523078 14523098 -167892144 + L2 LINE L2 2995 3015 -298 1709 173 58 6 chr6 14523098 14523427 -167891815 + MER7A DNA MER2_type 2 345 -1 348 269 54 130 chr6 14523427 14523722 -167891520 + L2 LINE L2 3015 3286 -27 304 295 123 57 chr6 14524224 14524573 -167890669 - L1M2 LINE L1 -5599 1250 879 30 69 0 0 chr6 14524719 14524777 -167890465 + GC_rich Low_complexity Low_complexity 1 58 0 680 63 0 0 chr6 14525565 14525644 -167889598 - MADE1 DNA Mariner -1 79 1 277 215 31 0 chr6 14525791 14525856 -167889386 - MER116 DNA Mariner -1 79 13 2713 199 73 50 chr6 14525974 14526178 -167889064 - L1ME2 LINE L1 0 6164 5966 2365 87 0 0 chr6 14526178 14526476 -167888766 - AluSg SINE Alu -12 298 1 2713 199 73 50 chr6 14526476 14527056 -167888186 - L1ME2 LINE L1 -198 5966 5362 308 254 0 0 chr6 14527065 14527128 -167888114 + MIR SINE MIR 194 256 -6 496 290 122 42 chr6 14527168 14527334 -167887908 + MLT1K LTR MaLR 5 156 -432 2158 92 35 0 chr6 14527334 14527617 -167887625 + AluSp SINE Alu 1 293 -20 496 290 122 42 chr6 14527617 14527632 -167887610 + MLT1K LTR MaLR 156 168 -420 2216 121 0 3 chr6 14527632 14527937 -167887305 - AluSx SINE Alu -8 304 1 496 290 122 42 chr6 14527937 14528198 -167887044 + MLT1K LTR MaLR 168 555 -33 318 305 28 22 chr6 14528822 14528963 -167886279 + L1MDa LINE L1 21 593 -5937 1621 246 38 12 chr6 14529035 14529535 -167885707 + L1MDa LINE L1 1868 2380 -4160 1374 172 0 52 chr6 14529535 14529785 -167885457 + AluJo SINE Alu 1 237 -75 581 195 29 17 chr6 14529790 14529964 -167885278 + L1MDa LINE L1 2385 2560 -3980 356 250 35 5 chr6 14529964 14530107 -167885135 - MER58C DNA MER1_type 0 215 1 469 207 7 64 chr6 14530107 14530247 -167884995 + L1MDa LINE L1 2593 2724 -3997 420 65 97 0 chr6 14530806 14530930 -167884312 + (TA)n Simple_repeat Simple_repeat 1 136 0 730 192 0 8 chr6 14530930 14531055 -167884187 - FLAM_C SINE Alu -19 124 1 848 247 44 68 chr6 14531153 14531495 -167883747 - L1MC4 LINE L1 -323 7672 7331 1911 199 22 10 chr6 14531620 14532032 -167883210 - Zaphod DNA AcHobo -8 4023 3607 2418 89 0 10 chr6 14532037 14532351 -167882891 - AluY SINE Alu 0 311 1 1942 107 43 11 chr6 14532394 14532675 -167882567 + AluSc SINE Alu 1 290 -19 2535 225 99 46 chr6 14532699 14532818 -167882424 - Zaphod DNA AcHobo -3074 957 846 1435 173 79 22 chr6 14532818 14533095 -167882147 - AluJo SINE Alu -19 293 1 2535 225 99 46 chr6 14533095 14533125 -167882117 - Zaphod DNA AcHobo -3185 846 819 2113 115 10 7 chr6 14533125 14533430 -167881812 + AluSq SINE Alu 3 308 -5 2535 225 99 46 chr6 14533430 14534171 -167881071 - Zaphod DNA AcHobo -3212 819 19 2395 92 0 3 chr6 14534699 14535003 -167880239 - AluSg SINE Alu -7 303 1 202 185 56 56 chr6 14535302 14535356 -167879886 - L2 LINE L2 -665 2649 2596 424 196 164 32 chr6 14535603 14535792 -167879450 + L1ME4a LINE L1 5874 6087 -34 1030 175 52 65 chr6 14535964 14536137 -167879105 + MER33 DNA MER1_type 38 207 -2378 2086 178 89 0 chr6 14536137 14536497 -167878745 - MSTD LTR MaLR -2 394 3 1030 175 52 65 chr6 14536497 14536614 -167878628 + MER33 DNA MER1_type 207 324 0 806 122 9 0 chr6 14536893 14537008 -167878234 - AluSg/x SINE Alu -19 290 175 2145 111 7 3 chr6 14536896 14537185 -167878057 - AluSx SINE Alu -22 290 1 215 190 68 181 chr6 14537802 14537938 -167877304 + MIR SINE MIR 65 169 -93 2264 102 0 0 chr6 14537938 14538248 -167876994 + AluY SINE Alu 1 310 0 215 190 68 181 chr6 14538248 14538331 -167876911 + MIR SINE MIR 169 260 -2 749 254 84 50 chr6 14538399 14538817 -167876425 - MLT1L LTR MaLR -8 607 109 6620 58 134 64 chr6 14538968 14540060 -167875182 - MER11A LTR ERVK 0 1266 2 419 362 74 29 chr6 14540319 14541170 -167874072 - L2 LINE L2 -179 3093 2202 356 141 0 14 chr6 14541239 14541310 -167873932 + (TCCCC)n Simple_repeat Simple_repeat 3 72 0 2064 130 10 0 chr6 14541310 14541617 -167873625 - AluSq SINE Alu -3 310 1 1198 236 217 12 chr6 14541786 14542201 -167873041 + MLT1F LTR MaLR 1 500 -42 2223 94 24 0 chr6 14542455 14542743 -167872499 - AluSp SINE Alu -18 295 1 21 82 0 0 chr6 14542834 14542883 -167872359 + AT_rich Low_complexity Low_complexity 1 49 0 208 250 0 0 chr6 14543247 14543299 -167871943 - MER91B DNA MER1_type -60 130 79 219 324 0 0 chr6 14543366 14543437 -167871805 + MER91B DNA MER1_type 70 140 0 3595 55 4 0 chr6 14544276 14544728 -167870514 + L1PA8 LINE L1 5719 6172 0 2946 49 3 0 chr6 14545398 14545806 -167869436 + L1PA8 LINE L1 5805 6213 0 472 295 58 12 chr6 14546321 14546494 -167868748 + MLT1J2 LTR MaLR 270 450 0 400 218 69 10 chr6 14546495 14546596 -167868646 + MER91C DNA MER1_type 33 139 -1 356 272 152 58 chr6 14546602 14546793 -167868449 + LTR67 LTR ERVL 86 294 -263 353 238 50 10 chr6 14546869 14546970 -167868272 + LTR67 LTR ERVL 401 505 -52 700 218 51 13 chr6 14547166 14547321 -167867921 - MLT1J LTR MaLR -246 265 105 547 86 0 25 chr6 14547321 14547402 -167867840 + MER65A LTR ERV1 1 79 -366 1280 126 5 0 chr6 14547402 14547592 -167867650 + AluSg/x SINE Alu 120 310 0 1967 122 31 88 chr6 14547592 14547799 -167867443 + MER65A LTR ERV1 82 299 -146 2410 77 0 32 chr6 14547799 14548111 -167867131 - AluY SINE Alu -9 302 1 1967 122 31 88 chr6 14548111 14548142 -167867100 + MER65A LTR ERV1 299 330 -115 2056 125 7 0 chr6 14548142 14548430 -167866812 + AluSx SINE Alu 1 290 -22 1967 122 31 88 chr6 14548430 14548575 -167866667 + MER65A LTR ERV1 330 444 -1 227 311 23 45 chr6 14548614 14548746 -167866496 - L2 LINE L2 -323 2949 2821 311 272 92 82 chr6 14548862 14549068 -167866174 - LTR67 LTR ERVL -21 536 329 337 246 113 49 chr6 14549155 14549297 -167865945 - LTR67 LTR ERVL -267 290 140 264 242 0 45 chr6 14549328 14549394 -167865848 - LTR67 LTR ERVL -492 65 3 375 277 57 21 chr6 14549632 14549773 -167865469 - MIR SINE MIR -116 146 1 1848 169 0 7 chr6 14550348 14550650 -167864592 - AluJb SINE Alu -12 300 1 339 25 0 0 chr6 14550841 14550881 -167864361 + (CA)n Simple_repeat Simple_repeat 2 41 0 2564 51 0 0 chr6 14551171 14551467 -167863775 - AluY SINE Alu -15 296 1 2958 189 20 16 chr6 14552210 14552770 -167862472 + MER68 LTR ERV1 1 562 0 281 229 86 0 chr6 14552844 14552914 -167862328 + L2 LINE L2 3192 3267 -46 1892 173 33 92 chr6 14553207 14553323 -167861919 + MLT1C LTR MaLR 6 127 -340 2100 106 3 14 chr6 14553323 14553616 -167861626 + AluSx SINE Alu 6 295 -17 1892 173 33 92 chr6 14553616 14553722 -167861520 + MLT1C LTR MaLR 127 238 -229 1857 187 152 0 chr6 14553722 14554144 -167861098 + MER66B LTR ERV1 1 486 0 1892 173 33 92 chr6 14554144 14554411 -167860831 + MLT1C LTR MaLR 238 467 0 204 40 0 0 chr6 14554704 14554729 -167860513 + (T)n Simple_repeat Simple_repeat 1 25 0 2516 63 0 13 chr6 14554919 14555234 -167860008 + AluY SINE Alu 1 311 0 1441 69 0 21 chr6 14555525 14555714 -167859528 - AluSq SINE Alu -1 312 128 607 226 0 16 chr6 14555891 14556015 -167859227 - FLAM_A SINE Alu -11 122 1 2041 138 0 13 chr6 14556027 14556332 -167858910 - AluSx SINE Alu -10 302 2 2048 75 21 108 chr6 14556343 14556677 -167858565 - AluYb8 SINE Alu -13 305 1 1541 155 4 30 chr6 14556704 14556975 -167858267 + AluJb SINE Alu 36 299 -13 1062 190 86 23 chr6 14556984 14557409 -167857833 - MER74A LTR ERVL -2 556 50 407 178 78 93 chr6 14557409 14557584 -167857658 + LTR8 LTR ERV1 1 145 -396 928 230 108 65 chr6 14557690 14558171 -167857071 + LTR8A LTR ERV1 116 727 0 1378 170 78 40 chr6 14558229 14558652 -167856590 - L1MC5 LINE L1 -36 7925 7487 2922 162 31 23 chr6 14559047 14559538 -167855704 - MER89 LTR ERV1 0 559 73 2496 87 0 3 chr6 14559538 14559849 -167855393 - AluSq SINE Alu -3 310 1 255 31 0 0 chr6 14559851 14559883 -167855359 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2132 107 0 0 chr6 14559883 14560163 -167855079 - AluSx SINE Alu -30 282 3 2922 162 31 23 chr6 14560163 14560222 -167855020 - MER89 LTR ERV1 -485 74 1 1435 148 169 57 chr6 14560583 14560726 -167854516 + MSTA LTR MaLR 1 127 -301 2108 117 4 0 chr6 14560726 14561036 -167854206 - AluSx SINE Alu 0 311 1 1435 148 169 57 chr6 14561036 14561276 -167853966 + MSTA LTR MaLR 127 428 0 1696 235 76 12 chr6 14561310 14561812 -167853430 + MER74B LTR ERVL 85 618 -4 1446 137 144 4 chr6 14561830 14562099 -167853143 + MLT1A1 LTR MaLR 2 341 -55 354 174 41 10 chr6 14562117 14562215 -167853027 + CT-rich Low_complexity Low_complexity 4 104 0 1799 185 3 3 chr6 14562240 14562543 -167852699 - AluJo SINE Alu -7 305 3 428 136 0 86 chr6 14562544 14562625 -167852617 + MLT1A1 LTR MaLR 292 365 0 261 222 58 159 chr6 14562775 14562982 -167852260 - HERVL LTR ERVL -4275 1379 1194 1441 183 84 7 chr6 14563257 14563531 -167851711 - AluJo SINE Alu -17 295 1 321 210 190 0 chr6 14563821 14563921 -167851321 - Charlie7 DNA MER1_type -2044 568 450 5477 162 34 27 chr6 14563926 14565439 -167849803 - pTR5 LTR ERV1 0 2438 743 2201 152 26 5 chr6 14565480 14565862 -167849380 - MLT1B LTR MaLR 0 390 1 601 292 55 18 chr6 14565918 14566192 -167849050 - Charlie7 DNA MER1_type -2238 374 91 569 175 60 96 chr6 14566874 14566965 -167848277 - MER5A DNA MER1_type -29 160 76 2206 115 3 0 chr6 14566965 14567260 -167847982 - AluSg SINE Alu -14 296 1 569 175 60 96 chr6 14567260 14567334 -167847908 - MER5A DNA MER1_type -113 76 1 2172 118 0 10 chr6 14567371 14567677 -167847565 - AluSx SINE Alu -9 303 1 218 232 36 0 chr6 14569300 14569356 -167845886 - L2 LINE L2 -1531 1783 1726 24 32 0 0 chr6 14569379 14569410 -167845832 + AT_rich Low_complexity Low_complexity 1 31 0 4839 173 64 61 chr6 14569971 14571663 -167843579 + pTR5 LTR ERV1 741 2438 0 1262 213 39 18 chr6 14571723 14572005 -167843237 + AluJo SINE Alu 5 292 -20 369 264 163 20 chr6 14572025 14572271 -167842971 - L1M4 LINE L1 -1077 5069 4789 2026 130 7 20 chr6 14573079 14573380 -167841862 - AluSx SINE Alu -15 297 1 2618 205 22 16 chr6 14573786 14574341 -167840901 - MER74A LTR ERVL 0 558 1 2829 69 0 0 chr6 14574844 14575205 -167840037 - L1PA8 LINE L1 -7 6165 5805 726 270 93 9 chr6 14576859 14577085 -167838157 + MIR SINE MIR 18 262 0 338 304 88 23 chr6 14577162 14577333 -167837909 + MIR3 SINE MIR 20 201 -7 194 0 39 0 chr6 14577438 14577464 -167837778 + (CA)n Simple_repeat Simple_repeat 2 28 0 275 0 29 0 chr6 14577604 14577639 -167837603 + (CA)n Simple_repeat Simple_repeat 2 37 0 2190 120 0 3 chr6 14577711 14578011 -167837231 - AluSx SINE Alu -13 299 1 338 295 127 52 chr6 14578119 14578488 -167836754 - LTR16C LTR ERVL -5 486 90 857 165 44 118 chr6 14579124 14579271 -167835971 - L1MA9 LINE L1 -37 6275 6156 198 0 0 0 chr6 14579271 14579293 -167835949 + (TG)n Simple_repeat Simple_repeat 1 22 0 857 165 44 118 chr6 14579293 14579417 -167835825 - L1MA9 LINE L1 -156 6156 6024 21 0 0 0 chr6 14579683 14579704 -167835538 + AT_rich Low_complexity Low_complexity 1 21 0 3555 156 23 58 chr6 14579730 14580456 -167834786 - L1MB3 LINE L1 -33 6150 5450 6933 123 123 117 chr6 14580961 14582648 -167832594 - pTR5 LTR ERV1 0 2438 742 1826 177 44 36 chr6 14583076 14583461 -167831781 + MLT1B LTR MaLR 3 390 0 204 40 0 0 chr6 14583522 14583547 -167831695 + (TG)n Simple_repeat Simple_repeat 1 25 0 404 228 94 34 chr6 14584649 14584798 -167830444 + L1M4 LINE L1 2371 2528 -3618 2268 156 22 34 chr6 14584821 14584922 -167830320 - MSTB LTR MaLR 0 426 325 1547 113 41 0 chr6 14584922 14585143 -167830099 - MER30 DNA MER1_type 0 230 1 2268 156 22 34 chr6 14585143 14585451 -167829791 - MSTB LTR MaLR -101 325 22 2022 130 0 17 chr6 14585459 14585760 -167829482 + AluSg SINE Alu 1 296 -14 599 285 92 14 chr6 14585800 14586225 -167829017 + L1M4 LINE L1 2558 3015 -3131 261 213 117 0 chr6 14586245 14586339 -167828903 + L1M4 LINE L1 3118 3222 -2924 487 276 58 12 chr6 14586434 14586688 -167828554 + L1MDa LINE L1 1776 2080 -4538 1703 141 35 0 chr6 14586702 14586958 -167828284 + AluSx SINE Alu 36 300 -12 2228 126 34 28 chr6 14586961 14587037 -167828205 - MER7C DNA MER2_type -2659 369 295 2699 153 36 2 chr6 14587037 14587449 -167827793 - MSTB LTR MaLR 0 426 1 2228 126 34 28 chr6 14587449 14587730 -167827512 - MER7C DNA MER2_type -2733 295 10 264 223 152 0 chr6 14587945 14588057 -167827185 + L1MDa LINE L1 2526 2654 -3888 303 215 0 35 chr6 14588362 14588447 -167826795 + L1MDa LINE L1 1573 1737 -4645 3501 111 46 4 chr6 14588496 14589000 -167826242 + LTR17 LTR ERV1 256 780 0 14419 75 24 30 chr6 14589024 14590709 -167824533 + HERV17 LTR ERV1 22 1693 -6933 2406 77 3 0 chr6 14590709 14591009 -167824233 + AluY SINE Alu 1 301 -10 14419 75 24 30 chr6 14591009 14591322 -167823920 + HERV17 LTR ERV1 1693 2007 -6619 10946 54 5 8 chr6 14591314 14593244 -167821998 + HERV17 LTR ERV1 2430 6019 -2607 * 304 51 0 0 chr6 14593237 14593276 -167821966 + HERV17 LTR ERV1 7510 7548 -1078 * 2356 52 3 3 chr6 14593266 14593553 -167821689 + HERV17 LTR ERV1 8335 8621 -5 2427 104 0 6 chr6 14593557 14593885 -167821357 + LTR17 LTR ERV1 1 326 -454 204 149 0 21 chr6 14593887 14593934 -167821308 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 309 205 8 148 chr6 14593981 14594103 -167821139 + L2 LINE L2 3117 3221 -92 209 238 12 0 chr6 14594660 14594740 -167820502 + (TG)n Simple_repeat Simple_repeat 1 81 0 2034 124 28 0 chr6 14595380 14595663 -167819579 - AluSx SINE Alu -21 291 1 22 56 0 0 chr6 14596118 14596154 -167819088 + AT_rich Low_complexity Low_complexity 1 36 0 990 194 25 138 chr6 14596156 14596481 -167818761 - AluYb8 SINE Alu -30 288 1 260 255 142 28 chr6 14596523 14596629 -167818613 + MER5B DNA MER1_type 1 118 -60 686 257 160 51 chr6 14596804 14596936 -167818306 + L2 LINE L2 2926 3042 -271 1922 111 56 0 chr6 14596936 14597206 -167818036 - AluSx SINE Alu -9 303 19 686 257 160 51 chr6 14597206 14597423 -167817819 + L2 LINE L2 3042 3313 0 285 289 67 0 chr6 14597440 14597544 -167817698 - MIR SINE MIR -55 207 97 1598 142 104 21 chr6 14597545 14597833 -167817409 + AluJo SINE Alu 1 312 0 186 43 0 0 chr6 14597837 14597860 -167817382 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 268 233 63 74 chr6 14597861 14597972 -167817270 - MIR SINE MIR -93 115 19 189 345 18 0 chr6 14598031 14598086 -167817156 - L2 LINE L2 -94 3178 3123 322 312 183 46 chr6 14598146 14598565 -167816677 + L2 LINE L2 2393 2753 -519 2091 119 3 3 chr6 14598565 14598860 -167816382 - AluSx SINE Alu -17 295 1 322 312 183 46 chr6 14598860 14599212 -167816030 + L2 LINE L2 2753 3261 -11 1100 182 10 0 chr6 14599321 14599519 -167815723 - MLT1B LTR MaLR 0 390 191 1586 121 71 36 chr6 14599526 14599807 -167815435 + THE1B LTR MaLR 1 291 -73 269 297 0 0 chr6 14599824 14599915 -167815327 + L1MC4 LINE L1 6613 6703 -1339 2257 93 14 0 chr6 14599921 14600211 -167815031 - AluSx SINE Alu -18 294 1 600 133 0 11 chr6 14600211 14600301 -167814941 + THE1B LTR MaLR 276 364 0 915 96 86 91 chr6 14600326 14600513 -167814729 - MLT1B LTR MaLR -204 186 1 431 246 80 85 chr6 14600513 14600737 -167814505 + LTR16A LTR ERVL 216 438 -12 1542 216 30 24 chr6 14601926 14602264 -167812978 - MER58B DNA MER1_type -1 340 1 38 0 0 0 chr6 14602723 14602761 -167812481 + AT_rich Low_complexity Low_complexity 1 38 0 311 241 49 0 chr6 14603009 14603233 -167812009 + (TA)n Simple_repeat Simple_repeat 1 235 0 2131 128 0 3 chr6 14603275 14603580 -167811662 - AluSx SINE Alu -8 304 1 515 258 52 0 chr6 14603654 14603809 -167811433 - L1ME3A LINE L1 -281 5889 5727 1630 172 29 16 chr6 14603929 14604237 -167811005 + MLT1B LTR MaLR 79 390 0 591 286 80 10 chr6 14604386 14604697 -167810545 - L1ME3A LINE L1 -1419 4727 4395 218 254 76 34 chr6 14604881 14604999 -167810243 - L2 LINE L2 -973 2341 2219 1671 157 66 11 chr6 14605130 14605404 -167809838 + AluJb SINE Alu 1 289 -23 1530 161 57 143 chr6 14605427 14605488 -167809754 - MLT1C LTR MaLR 0 467 402 1854 147 25 0 chr6 14605488 14605767 -167809475 + AluSx SINE Alu 1 286 -26 1530 161 57 143 chr6 14605767 14606165 -167809077 - MLT1C LTR MaLR -65 402 48 24 53 0 0 chr6 14606523 14606561 -167808681 + AT_rich Low_complexity Low_complexity 1 38 0 1605 98 13 17 chr6 14606561 14606767 -167808475 - L1MA5A LINE L1 -5 6292 6086 2731 88 59 0 chr6 14606767 14607121 -167808121 - THE1C LTR MaLR 0 375 1 1605 98 13 17 chr6 14607121 14607150 -167808092 - L1MA5A LINE L1 -211 6086 6058 320 319 38 11 chr6 14607165 14607350 -167807892 - L3 LINE CR1 -199 1378 1189 771 293 19 0 chr6 14607364 14607569 -167807673 - MIR SINE MIR -2 260 52 273 154 103 39 chr6 14607766 14607844 -167807398 - MLT1L LTR MaLR -4 611 529 754 286 50 36 chr6 14608465 14608881 -167806361 + L1ME4a LINE L1 5691 6112 -9 2306 101 0 0 chr6 14609502 14609808 -167805434 - AluSx SINE Alu -6 306 1 873 148 7 14 chr6 14610136 14610278 -167804964 + FLAM_C SINE Alu 1 141 -2 2067 115 26 26 chr6 14610377 14610689 -167804553 - AluSx SINE Alu 0 312 1 663 258 38 113 chr6 14610811 14611102 -167804140 - MLT1L LTR MaLR -7 608 236 2693 42 0 0 chr6 14611120 14611430 -167803812 - AluY SINE Alu -1 310 1 231 114 0 0 chr6 14612230 14612265 -167802977 + (GAA)n Simple_repeat Simple_repeat 1 35 0 2517 54 0 3 chr6 14612344 14612640 -167802602 + AluY SINE Alu 1 295 -16 1841 161 13 3 chr6 14612655 14612960 -167802282 + AluJb SINE Alu 5 312 0 240 35 0 0 chr6 14613504 14613533 -167801709 + (TG)n Simple_repeat Simple_repeat 2 30 0 353 169 14 14 chr6 14613791 14613862 -167801380 + MLT1J2 LTR MaLR 74 144 -306 370 217 22 22 chr6 14613983 14614075 -167801167 + MLT1I LTR MaLR 309 400 -9 395 287 16 39 chr6 14614462 14614591 -167800651 + MIR3 SINE MIR 15 140 -68 187 299 39 52 chr6 14614604 14614647 -167800595 + MIR3 SINE MIR 6 49 -159 1195 162 133 41 chr6 14614647 14614918 -167800324 - AluJb SINE Alu -6 296 1 187 299 39 52 chr6 14614918 14614951 -167800291 + MIR3 SINE MIR 49 81 -127 266 302 88 39 chr6 14615726 14615908 -167799334 - L1MC4a LINE L1 -1853 5955 5765 300 333 217 19 chr6 14615957 14616266 -167798976 - L1MC4a LINE L1 -1895 5913 5544 40 49 0 0 chr6 14616291 14616352 -167798890 + AT_rich Low_complexity Low_complexity 1 61 0 2259 104 3 0 chr6 14616423 14616721 -167798521 + AluSx SINE Alu 1 299 -13 478 267 116 54 chr6 14616724 14617065 -167798177 - L1MC4a LINE L1 -83 6038 5674 253 284 49 0 chr6 14617687 14617768 -167797474 - L2 LINE L2 -4 3309 3225 833 122 0 7 chr6 14618035 14618183 -167797059 + (TTCC)n Simple_repeat Simple_repeat 4 150 0 343 346 86 0 chr6 14619762 14619924 -167795318 - MIR SINE MIR -11 251 76 2282 81 17 3 chr6 14620309 14620604 -167794638 + L1PA10 LINE L1 5868 6166 -2 4399 149 55 17 chr6 14620734 14621547 -167793695 + L1MB8 LINE L1 5337 6178 0 745 260 44 52 chr6 14621570 14621820 -167793422 - MIR SINE MIR -13 249 2 209 209 66 77 chr6 14621803 14621894 -167793348 - MIR3 SINE MIR -1 207 118 * 2295 103 3 0 chr6 14622500 14622802 -167792440 - AluSx SINE Alu -9 303 1 198 0 0 0 chr6 14623643 14623665 -167791577 + (ATG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr6 14623859 14623889 -167791353 + (T)n Simple_repeat Simple_repeat 1 30 0 943 269 124 38 chr6 14623905 14624358 -167790884 + MLT1L LTR MaLR 122 613 -2 228 357 0 18 chr6 14625249 14625361 -167789881 - L2 LINE L2 -217 3055 2946 199 329 71 41 chr6 14626390 14626560 -167788682 + L2 LINE L2 2804 2978 -294 815 295 60 48 chr6 14627158 14627571 -167787671 - L2 LINE L2 -9 3304 2887 206 132 0 26 chr6 14627613 14627637 -167787605 + (TC)n Simple_repeat Simple_repeat 2 26 -12 2027 106 0 0 chr6 14627637 14627901 -167787341 - AluSq SINE Alu -9 304 41 206 132 0 26 chr6 14627901 14627914 -167787328 + (TC)n Simple_repeat Simple_repeat 26 38 0 487 335 36 33 chr6 14628084 14628359 -167786883 + L2 LINE L2 2440 2715 -599 627 119 0 28 chr6 14628753 14628862 -167786380 + MER53 DNA DNA 1 106 -83 183 167 0 0 chr6 14629376 14629406 -167785836 - MIR SINE MIR -56 152 123 224 200 0 0 chr6 14631162 14631197 -167784045 + MIR SINE MIR 64 98 -110 23 54 0 0 chr6 14631404 14631441 -167783801 + AT_rich Low_complexity Low_complexity 1 37 0 2491 74 0 0 chr6 14631687 14631983 -167783259 + AluY SINE Alu 1 296 -15 688 273 43 0 chr6 14632056 14632217 -167783025 - MIR SINE MIR -72 190 23 1086 163 153 28 chr6 14632427 14632715 -167782527 - MER33 DNA MER1_type 0 324 1 806 275 81 6 chr6 14633395 14633741 -167781501 - L1MC4a LINE L1 -1862 5946 5575 189 107 0 0 chr6 14634553 14634581 -167780661 + (GGA)n Simple_repeat Simple_repeat 2 29 0 201 174 0 22 chr6 14634735 14634781 -167780461 + (TGG)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr6 14634996 14635017 -167780225 + GC_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr6 14635133 14635182 -167780060 + GC_rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr6 14635194 14635236 -167780006 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr6 14635339 14635360 -167779882 + GC_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 14635447 14635478 -167779764 + GC_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr6 14637054 14637079 -167778163 + (TG)n Simple_repeat Simple_repeat 2 26 0 648 177 31 8 chr6 14639851 14639981 -167775261 - MIR SINE MIR -10 252 120 1208 144 5 5 chr6 14640447 14640648 -167774594 - MER2 DNA MER2_type -143 202 2 288 344 0 0 chr6 14641009 14641102 -167774140 - MIR SINE MIR -2 260 168 743 243 22 33 chr6 14641968 14642066 -167773176 + MIR SINE MIR 35 132 -130 2236 164 0 3 chr6 14642066 14642432 -167772810 + MLT1A1 LTR MaLR 1 365 0 743 243 22 33 chr6 14642432 14642514 -167772728 + MIR SINE MIR 132 213 -49 731 198 5 5 chr6 14643523 14643538 -167771704 - Charlie5 DNA MER1_type -75 2549 2535 1417 156 93 42 chr6 14643538 14643827 -167771415 + AluJo SINE Alu 1 304 -8 731 198 5 5 chr6 14643827 14644013 -167771229 - Charlie5 DNA MER1_type -88 2536 2348 * 2204 128 0 6 chr6 14644022 14644335 -167770907 + AluSx SINE Alu 1 311 -1 881 211 5 0 chr6 14644335 14644518 -167770724 - Charlie5 DNA MER1_type -2437 187 1 224 391 0 0 chr6 14644930 14645017 -167770225 + L2 LINE L2 1227 1313 -2001 682 277 84 64 chr6 14645114 14645498 -167769744 - L2 LINE L2 -280 3033 2594 272 282 0 0 chr6 14645522 14645600 -167769642 + L2 LINE L2 3158 3235 -78 2393 118 83 8 chr6 14646142 14646540 -167768702 - MSTA LTR MaLR 0 428 1 270 309 64 77 chr6 14646858 14647372 -167767870 - L2 LINE L2 -47 3225 2665 3414 245 67 38 chr6 14647450 14648291 -167766951 - L1ME3A LINE L1 -6 6233 5418 2072 74 32 58 chr6 14648291 14648603 -167766639 - AluY SINE Alu -7 304 1 3414 245 67 38 chr6 14648603 14649112 -167766130 - L1ME3A LINE L1 -821 5418 4925 2116 105 0 0 chr6 14649112 14649389 -167765853 + AluSq SINE Alu 26 302 -11 3414 245 67 38 chr6 14649389 14649818 -167765424 - L1ME3A LINE L1 -1314 4925 4510 2427 87 0 0 chr6 14649818 14650127 -167765115 - AluY SINE Alu 0 311 3 3414 245 67 38 chr6 14650127 14650727 -167764515 - L1ME3A LINE L1 -1729 4510 3771 1517 272 91 19 chr6 14650743 14652033 -167763209 - L1MEc LINE L1 -2839 3376 2032 724 281 107 35 chr6 14652195 14652638 -167762604 - L1MEc LINE L1 -4583 1813 1305 1816 186 0 0 chr6 14652638 14652928 -167762314 - AluSx SINE Alu -22 290 1 724 281 107 35 chr6 14652928 14653147 -167762095 - L1MEc LINE L1 -5091 1305 1103 400 191 11 11 chr6 14653183 14653277 -167761965 - L1MB8 LINE L1 -10 6168 6075 22 35 0 0 chr6 14653467 14653496 -167761746 + AT_rich Low_complexity Low_complexity 1 29 0 844 181 0 0 chr6 14653569 14653707 -167761535 - FLAM_C SINE Alu -5 138 1 328 399 69 17 chr6 14653817 14653990 -167761252 + L2 LINE L2 3089 3270 -2 259 229 36 0 chr6 14654004 14654090 -167761152 - MER31B LTR ERV1 -16 527 385 292 225 0 34 chr6 14654183 14654272 -167760970 - MER67B LTR ERV1 -307 403 318 1404 203 90 35 chr6 14654272 14654744 -167760498 - MER67B LTR ERV1 -255 406 5 550 92 0 0 chr6 14654740 14654828 -167760414 - MER31B LTR ERV1 -391 75 1 * 531 331 39 11 chr6 14654959 14655137 -167760105 - MIR SINE MIR -48 214 32 406 297 41 28 chr6 14655401 14655546 -167759696 - MIR3 SINE MIR -1 207 61 2524 170 27 83 chr6 14656099 14656427 -167758815 - MER41C LTR ERV1 0 554 271 2020 138 7 0 chr6 14656427 14656751 -167758491 - AluSx SINE Alu 0 326 1 2524 170 27 83 chr6 14656751 14657008 -167758234 - MER41C LTR ERV1 -283 271 1 12144 123 36 47 chr6 14657009 14659372 -167755870 - MER41C-int LTR ERV1 -1 5945 3609 3421 151 26 16 chr6 14660086 14660785 -167754457 - MER41C-int LTR ERV1 -2301 3645 2955 2072 139 10 0 chr6 14660785 14661080 -167754162 - AluSx SINE Alu -11 301 4 2146 136 0 0 chr6 14661089 14661383 -167753859 - AluSx SINE Alu -18 294 1 3421 151 26 16 chr6 14661383 14661892 -167753350 - MER41C-int LTR ERV1 -2998 2948 2349 * 5093 165 13 32 chr6 14661884 14662933 -167752309 - MER41C-int LTR ERV1 -4820 1126 7 2058 197 13 111 chr6 14662940 14663554 -167751688 - MER41C LTR ERV1 0 554 1 249 308 234 9 chr6 14664097 14664204 -167751038 + L2 LINE L2 3142 3272 0 1654 222 52 46 chr6 14664299 14664726 -167750516 - L1MC5 LINE L1 -36 7925 7491 1083 163 17 54 chr6 14664726 14664965 -167750277 - MER30 DNA MER1_type 0 230 1 1654 222 52 46 chr6 14664965 14665167 -167750075 - L1MC5 LINE L1 -470 7491 7292 585 253 160 10 chr6 14665364 14665558 -167749684 - MER58A DNA MER1_type -1 223 1 399 218 35 105 chr6 14665607 14665836 -167749406 - L1MC5 LINE L1 -823 7138 6926 819 142 0 17 chr6 14666055 14666175 -167749067 + FLAM_C SINE Alu 1 118 -25 1294 116 27 9 chr6 14666287 14666511 -167748731 - L1MA5 LINE L1 -356 5944 5717 2184 131 0 3 chr6 14666599 14666911 -167748331 - AluSx SINE Alu -1 311 1 265 200 0 0 chr6 14667328 14667373 -167747869 + MER41B LTR ERV1 1 45 -590 1972 86 0 0 chr6 14668430 14668693 -167746549 + AluSc SINE Alu 39 301 0 248 361 114 11 chr6 14668843 14669106 -167746136 - L2 LINE L2 -4 3309 3020 1589 164 40 20 chr6 14669109 14669484 -167745758 + MSTB1 LTR MaLR 1 432 0 1651 335 111 21 chr6 14669528 14670473 -167744769 - L2 LINE L2 -373 2941 1912 331 323 42 0 chr6 14670487 14670583 -167744659 + L2 LINE L2 3173 3272 0 839 173 0 0 chr6 14670646 14670779 -167744463 + FLAM_C SINE Alu 1 133 0 342 67 0 0 chr6 14670943 14670988 -167744254 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 255 91 14 chr6 14671645 14671741 -167743501 - MIR SINE MIR -72 190 37 1030 232 109 71 chr6 14673669 14674190 -167741052 - MLT1H LTR MaLR -8 541 1 21 36 0 0 chr6 14674356 14674384 -167740858 + AT_rich Low_complexity Low_complexity 1 28 0 382 270 104 56 chr6 14675566 14675940 -167739302 + HAL1 LINE L1 1141 1532 -975 2169 178 52 11 chr6 14675966 14676409 -167738833 - LOR1b LTR ERV1 0 461 1 1922 156 0 0 chr6 14676767 14677049 -167738193 + AluSx SINE Alu 1 282 -30 288 77 0 0 chr6 14677101 14677140 -167738102 + (TG)n Simple_repeat Simple_repeat 2 40 0 1742 144 0 8 chr6 14677151 14677414 -167737828 - AluJb SINE Alu -40 272 12 1030 298 143 48 chr6 14677425 14678023 -167737219 + L1M4 LINE L1 2226 2765 -3381 592 146 89 57 chr6 14678023 14678146 -167737096 - FLAM_C SINE Alu -6 127 1 1030 298 143 48 chr6 14678146 14678928 -167736314 + L1M4 LINE L1 2765 3738 -2408 235 306 0 0 chr6 14679047 14679109 -167736133 + (TATG)n Simple_repeat Simple_repeat 3 64 0 22 0 0 0 chr6 14679151 14679173 -167736069 + AT_rich Low_complexity Low_complexity 1 22 0 367 261 94 112 chr6 14679243 14679392 -167735850 - MLT1K LTR MaLR 0 588 438 261 0 0 0 chr6 14679392 14679421 -167735821 + (TTG)n Simple_repeat Simple_repeat 2 30 0 367 261 94 112 chr6 14679421 14679869 -167735373 - MLT1K LTR MaLR -150 438 2 2399 152 73 9 chr6 14680313 14680998 -167734244 - L1MA4A LINE L1 -12 6279 5532 227 87 65 43 chr6 14681188 14681234 -167734008 + CT-rich Low_complexity Low_complexity 3 49 0 1900 139 50 36 chr6 14681410 14681769 -167733473 + THE1B LTR MaLR 1 364 0 10995 81 23 62 chr6 14681769 14682305 -167732937 + THE1B-int LTR MaLR 1 556 -1024 2239 92 7 23 chr6 14682305 14682608 -167732634 + AluY SINE Alu 1 298 -13 10995 81 23 62 chr6 14682608 14683715 -167731527 + THE1B-int LTR MaLR 556 1580 0 2028 116 41 41 chr6 14683715 14684077 -167731165 + THE1B LTR MaLR 1 362 -2 407 141 43 11 chr6 14684154 14684246 -167730996 - L1ME3A LINE L1 -216 5954 5860 397 0 38 0 chr6 14690488 14690541 -167724701 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 233 213 0 0 chr6 14691982 14692029 -167723213 - L2 LINE L2 -1046 2268 2222 4534 99 48 24 chr6 14692059 14692805 -167722437 - L1MA5A LINE L1 -4 6293 5530 297 209 67 57 chr6 14693074 14693179 -167722063 - L1MC4 LINE L1 -17 8025 7920 600 271 122 85 chr6 14693338 14693822 -167721420 - L1MC4 LINE L1 -349 7693 7192 2259 117 0 0 chr6 14695320 14695627 -167719615 - AluSc SINE Alu -2 307 1 2397 141 25 30 chr6 14695928 14696362 -167718880 + MSTB1 LTR MaLR 1 432 0 297 278 35 26 chr6 14696685 14696800 -167718442 - MER103 DNA DNA -48 118 3 185 259 52 0 chr6 14697300 14697358 -167717884 - MIR3 SINE MIR -11 197 137 3783 249 112 86 chr6 14698216 14698483 -167716759 - HAL1 LINE L1 0 2507 2249 288 0 0 0 chr6 14698483 14698515 -167716727 + (CA)n Simple_repeat Simple_repeat 2 33 0 3783 249 112 86 chr6 14698515 14699051 -167716191 - HAL1 LINE L1 -258 2249 1729 288 150 0 0 chr6 14699051 14699091 -167716151 + 5S rRNA rRNA 1 40 -81 3783 249 112 86 chr6 14699091 14700473 -167714769 - HAL1 LINE L1 -778 1729 223 2230 110 13 3 chr6 14701537 14701838 -167713404 - AluSx SINE Alu -8 304 1 24 0 0 0 chr6 14701994 14702018 -167713224 + AT_rich Low_complexity Low_complexity 1 24 0 3106 147 139 129 chr6 14702300 14702614 -167712628 - L1MC3 LINE L1 0 7785 7475 2225 123 0 0 chr6 14702614 14702914 -167712328 - AluSq SINE Alu -13 300 1 3106 147 139 129 chr6 14702914 14703184 -167712058 - L1MC3 LINE L1 -310 7475 7209 233 250 29 29 chr6 14703184 14703288 -167711954 - MLT1F1 LTR MaLR -450 117 14 3106 147 139 129 chr6 14703288 14703558 -167711684 - L1MC3 LINE L1 -576 7209 6818 1182 207 27 51 chr6 14703582 14703915 -167711327 - L1M4 LINE L1 -780 5366 5042 402 173 0 0 chr6 14703921 14703996 -167711246 + CT-rich Low_complexity Low_complexity 1 75 0 566 276 91 5 chr6 14703996 14704217 -167711025 - L1M4 LINE L1 -1086 5060 4821 2717 222 19 8 chr6 14704281 14704924 -167710318 - L1M4 LINE L1 -2078 4068 3419 362 238 0 0 chr6 14704926 14705010 -167710232 - L1MCb LINE L1 -5101 944 861 25 51 0 0 chr6 14705011 14705050 -167710192 + AT_rich Low_complexity Low_complexity 1 39 0 434 265 59 15 chr6 14705220 14705356 -167709886 - MIR SINE MIR -84 178 37 319 341 92 13 chr6 14705490 14705719 -167709523 - MLT1L LTR MaLR -23 592 346 2348 110 0 0 chr6 14705719 14706028 -167709214 + AluSc SINE Alu 1 309 0 303 114 0 0 chr6 14706300 14706344 -167708898 - MSTC LTR MaLR -12 416 373 2056 88 21 0 chr6 14706358 14706642 -167708600 - L1PA8 LINE L1 -2 6170 5881 2655 114 16 10 chr6 14706642 14707028 -167708214 - MSTC LTR MaLR -40 388 1 28 38 0 19 chr6 14707481 14707520 -167707722 + AT_rich Low_complexity Low_complexity 1 40 -12 2106 122 0 7 chr6 14707520 14707808 -167707434 - AluSg SINE Alu -24 286 1 28 38 0 19 chr6 14707808 14707821 -167707421 + AT_rich Low_complexity Low_complexity 40 52 0 303 330 128 21 chr6 14708400 14708588 -167706654 - MIR SINE MIR -35 227 20 469 165 39 29 chr6 14708607 14708710 -167706532 + MER5B DNA MER1_type 1 104 -74 2288 146 59 7 chr6 14708738 14709142 -167706100 - MSTB1 LTR MaLR -3 429 5 246 214 253 33 chr6 14709394 14709552 -167705690 - L1ME3A LINE L1 -230 5940 5764 1664 170 43 0 chr6 14709590 14709867 -167705375 + AluJb SINE Alu 1 289 -23 387 290 61 20 chr6 14709878 14710369 -167704873 - L1ME3A LINE L1 -644 5526 4987 904 243 74 49 chr6 14710377 14710768 -167704474 - MLT1I LTR MaLR 0 409 9 700 158 83 0 chr6 14711051 14711171 -167704071 + FLAM_A SINE Alu 2 131 -2 267 262 36 12 chr6 14712450 14712534 -167702708 + L3 LINE CR1 1384 1469 -108 4370 145 58 48 chr6 14712541 14713927 -167701315 + pTR5 LTR ERV1 743 2438 0 357 24 0 0 chr6 14713938 14713980 -167701262 + (TA)n Simple_repeat Simple_repeat 2 43 0 941 239 79 45 chr6 14714046 14714468 -167700774 - MLT1C LTR MaLR -5 462 1 2433 94 0 3 chr6 14716355 14716663 -167698579 - AluSc SINE Alu -2 307 1 256 276 0 13 chr6 14717317 14717393 -167697849 + C-rich Low_complexity Low_complexity 4 78 0 1918 179 0 3 chr6 14717454 14717766 -167697476 - AluJo SINE Alu -1 311 1 2190 120 17 0 chr6 14717843 14718142 -167697100 + AluSx SINE Alu 1 304 -8 262 309 60 1 chr6 14718605 14718749 -167696493 + MIR SINE MIR 20 172 -64 278 247 136 0 chr6 14721151 14721232 -167694010 + MLT1J1 LTR MaLR 1 92 -354 314 218 13 13 chr6 14721233 14721311 -167693931 + MLT1J1 LTR MaLR 369 446 0 1447 163 66 42 chr6 14721358 14721646 -167693596 - AluJb SINE Alu -12 300 6 2628 205 5 51 chr6 14721854 14721888 -167693354 - MLT2B3 LTR ERVL -6 548 514 405 0 0 0 chr6 14721888 14721933 -167693309 + (CA)n Simple_repeat Simple_repeat 2 46 0 2628 205 5 51 chr6 14721933 14722103 -167693139 - MLT2B3 LTR ERVL -40 514 338 2154 135 27 43 chr6 14722103 14722473 -167692769 - THE1B LTR MaLR 0 364 1 2628 205 5 51 chr6 14722473 14722837 -167692405 - MLT2B3 LTR ERVL -216 338 5 333 47 0 0 chr6 14723691 14723734 -167691508 + (TG)n Simple_repeat Simple_repeat 1 43 0 2340 106 0 0 chr6 14724342 14724645 -167690597 - AluSq SINE Alu -10 303 1 243 302 62 0 chr6 14725031 14725127 -167690115 - MIR SINE MIR -72 190 89 1618 199 89 35 chr6 14725343 14725715 -167689527 - MSTD LTR MaLR 0 396 5 207 235 29 29 chr6 14725892 14725960 -167689282 + CT-rich Low_complexity Low_complexity 5 72 0 554 224 135 86 chr6 14726122 14726367 -167688875 - LTR41 LTR ERVL -7 766 510 446 226 185 0 chr6 14726644 14726790 -167688452 - LTR41 LTR ERVL -581 192 20 255 277 53 11 chr6 14727113 14727207 -167688035 + L2 LINE L2 3172 3269 -44 326 241 46 0 chr6 14728039 14728126 -167687116 + L2 LINE L2 3223 3313 0 4179 143 49 98 chr6 14728131 14729422 -167685820 + pTR5 LTR ERV1 7 557 -157 1226 243 53 27 chr6 14729438 14729775 -167685467 - MLT1A1 LTR MaLR -15 350 5 482 301 15 36 chr6 14729779 14729975 -167685267 - MLT1K LTR MaLR -40 548 357 682 235 67 10 chr6 14730006 14730211 -167685031 - MER20B DNA MER1_type 0 219 3 1596 204 74 71 chr6 14730404 14730928 -167684314 - MLT1F LTR MaLR -13 529 4 414 149 11 21 chr6 14731974 14732068 -167683174 + CT-rich Low_complexity Low_complexity 2 94 0 1710 164 0 25 chr6 14732070 14732350 -167682892 - AluJo SINE Alu -39 273 1 436 177 0 0 chr6 14733121 14733200 -167682042 + MIR SINE MIR 75 153 -109 1862 148 62 28 chr6 14733200 14733557 -167681685 + THE1C LTR MaLR 1 369 -6 2300 107 0 3 chr6 14733732 14734030 -167681212 - AluSx SINE Alu -14 298 2 307 339 68 8 chr6 14735818 14736054 -167679188 + L2 LINE L2 2808 3057 -215 324 204 7 40 chr6 14737528 14737680 -167677562 + T-rich Low_complexity Low_complexity 4 150 0 220 254 36 0 chr6 14738258 14738313 -167676929 + CT-rich Low_complexity Low_complexity 1 57 0 246 338 0 13 chr6 14739756 14739833 -167675409 + MIR SINE MIR 36 111 -97 1582 158 32 57 chr6 14739899 14740215 -167675027 + AluJb SINE Alu 1 308 -4 1431 202 92 56 chr6 14740819 14740922 -167674320 + MLT1C LTR MaLR 6 104 -363 2336 110 0 3 chr6 14740922 14741231 -167674011 + AluSg SINE Alu 1 308 -2 1431 202 92 56 chr6 14741231 14741573 -167673669 + MLT1C LTR MaLR 104 467 0 489 17 0 0 chr6 14741594 14741652 -167673590 + (CA)n Simple_repeat Simple_repeat 2 59 0 585 208 47 0 chr6 14744192 14744298 -167670944 + FLAM_A SINE Alu 2 112 -30 1076 257 170 13 chr6 14745774 14746163 -167669079 + MLT1J2 LTR MaLR 1 450 0 1974 167 0 7 chr6 14746921 14747215 -167668027 - AluSx SINE Alu -20 292 1 336 191 0 0 chr6 14747400 14747484 -167667758 + CT-rich Low_complexity Low_complexity 2 85 0 842 211 0 0 chr6 14748620 14748767 -167666475 - FRAM SINE Alu -26 150 4 2186 128 0 0 chr6 14750657 14750953 -167664289 - AluSx SINE Alu -16 296 1 6309 48 10 15 chr6 14751197 14752002 -167663240 - L1PA8 LINE L1 0 6172 5372 1174 150 0 0 chr6 14752248 14752421 -167662821 - AluSg/x SINE Alu -2 308 136 304 242 63 0 chr6 14752506 14752601 -167662641 + MIR3 SINE MIR 101 201 -7 227 325 187 0 chr6 14752859 14753025 -167662217 - MIR SINE MIR -21 241 45 450 336 76 4 chr6 14753146 14753384 -167661858 + L2 LINE L2 3059 3313 0 198 0 0 0 chr6 14753653 14753675 -167661567 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2544 62 0 3 chr6 14754225 14754531 -167660711 - AluY SINE Alu -6 305 1 2166 116 7 3 chr6 14755385 14755686 -167659556 - AluSx SINE Alu -10 302 1 2274 88 3 0 chr6 14756083 14756394 -167658848 - AluSp SINE Alu 0 312 1 33 25 0 0 chr6 14756394 14756434 -167658808 + AT_rich Low_complexity Low_complexity 1 40 0 691 215 53 38 chr6 14757115 14757168 -167658074 + L2 LINE L2 3102 3153 -160 1870 144 77 12 chr6 14757168 14757508 -167657734 - MER47A DNA MER2_type -4 362 1 691 215 53 38 chr6 14757508 14757663 -167657579 + L2 LINE L2 3153 3313 0 373 200 104 17 chr6 14757842 14757957 -167657285 + L3 LINE CR1 1247 1371 -206 297 299 10 21 chr6 14758030 14758127 -167657115 + MER5A DNA MER1_type 72 167 -22 195 321 27 36 chr6 14758044 14758156 -167657086 - MER5A DNA MER1_type -75 114 4 * 2173 125 0 3 chr6 14758239 14758536 -167656706 + AluSq SINE Alu 7 302 -11 1023 121 83 0 chr6 14758906 14759063 -167656179 + THE1C LTR MaLR 1 170 -205 2088 153 31 0 chr6 14760058 14760379 -167654863 - MER7A DNA MER2_type 0 346 18 228 35 0 0 chr6 14761524 14761553 -167653689 + (CA)n Simple_repeat Simple_repeat 2 30 0 194 310 70 0 chr6 14762812 14762883 -167652359 - L2 LINE L2 -42 3230 3155 349 246 68 8 chr6 14763168 14763286 -167651956 - L2 LINE L2 -4 3309 3185 3176 175 109 71 chr6 14763848 14764757 -167650485 + MER63D DNA MER1_type 2 955 -106 2208 111 0 3 chr6 14764757 14765055 -167650187 - AluSg SINE Alu -9 301 5 3176 175 109 71 chr6 14765055 14765167 -167650075 + MER63D DNA MER1_type 955 1061 0 2310 95 0 0 chr6 14765252 14765565 -167649677 + AluSg SINE Alu 1 313 0 2014 132 10 7 chr6 14766308 14766636 -167648606 - AluJb SINE Alu 0 329 1 833 185 20 0 chr6 14766919 14767070 -167648172 - FRAM SINE Alu -25 151 1 270 81 0 0 chr6 14767397 14767434 -167647808 + (A)n Simple_repeat Simple_repeat 1 37 0 2355 92 0 7 chr6 14767436 14767772 -167647470 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 14768047 14768071 -167647171 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 192 250 20 60 chr6 14768387 14768487 -167646755 + L2 LINE L2 2566 2661 -653 265 232 0 0 chr6 14768534 14768603 -167646639 + MER5A DNA MER1_type 15 83 -106 1021 245 65 23 chr6 14768644 14769016 -167646226 + L1ME1 LINE L1 5752 6119 -45 2113 244 51 16 chr6 14769039 14769288 -167645954 + L1MC4 LINE L1 6990 7229 -813 734 205 58 18 chr6 14769288 14769459 -167645783 + MER45A DNA AcHobo 1 178 0 2113 244 51 16 chr6 14769459 14769899 -167645343 + L1MC4 LINE L1 7229 7893 -149 1052 231 86 10 chr6 14769997 14770413 -167644829 - L2 LINE L2 -261 3052 2608 1151 171 139 81 chr6 14771806 14772151 -167643091 + MLT1A1 LTR MaLR 1 365 0 2158 142 40 18 chr6 14772434 14772814 -167642428 + MLT1B LTR MaLR 3 390 0 2009 169 98 0 chr6 14772818 14773268 -167641974 + MLT1B-int LTR MaLR 5 600 -771 287 186 68 0 chr6 14773272 14773331 -167641911 + MLT1B LTR MaLR 95 157 -233 1635 153 11 30 chr6 14773613 14773881 -167641361 + AluJo SINE Alu 1 263 -49 216 0 0 0 chr6 14774554 14774578 -167640664 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2175 128 3 0 chr6 14774587 14774892 -167640350 + AluSx SINE Alu 1 306 -6 471 220 0 0 chr6 14775729 14775897 -167639345 + (TG)n Simple_repeat Simple_repeat 1 168 0 629 114 0 57 chr6 14776003 14776108 -167639134 + AluJo SINE Alu 37 135 -177 307 243 68 10 chr6 14776177 14776280 -167638962 - MIR SINE MIR -30 232 124 2309 108 0 0 chr6 14776315 14776621 -167638621 + AluSx SINE Alu 1 306 -6 360 0 0 0 chr6 14776915 14776955 -167638287 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 71 0 0 chr6 14776955 14776997 -167638245 + (GA)n Simple_repeat Simple_repeat 2 43 0 195 167 0 0 chr6 14777599 14777635 -167637607 - MIR SINE MIR -61 147 112 2384 95 0 3 chr6 14777645 14777951 -167637291 - AluSx SINE Alu -7 305 1 543 179 77 8 chr6 14778442 14778559 -167636683 - Charlie4 DNA MER1_type -5 1956 1832 830 188 55 143 chr6 14778604 14778721 -167636521 - MLT1A2 LTR MaLR 0 467 341 5883 66 33 3 chr6 14778721 14779478 -167635764 + LTR17 LTR ERV1 1 780 0 830 188 55 143 chr6 14779478 14779788 -167635454 - MLT1A2 LTR MaLR -126 341 2 * 1034 218 25 8 chr6 14779788 14780014 -167635228 - Charlie4 DNA MER1_type -1692 269 40 382 94 0 0 chr6 14780018 14780071 -167635171 + MLT2A1 LTR ERVL 1 53 -391 2195 82 147 0 chr6 14780149 14780468 -167634774 + MLT2A1 LTR ERVL 39 404 -40 282 233 47 0 chr6 14780472 14780558 -167634684 + L1MC4 LINE L1 6614 6703 -1339 316 62 62 0 chr6 14780561 14780609 -167634633 + MLT2A1 LTR ERVL 390 440 -4 1851 154 7 10 chr6 14781792 14782097 -167633145 + AluJb SINE Alu 6 309 -3 2222 94 0 11 chr6 14782106 14782393 -167632849 + AluSx SINE Alu 21 304 -8 2142 136 3 0 chr6 14782689 14782991 -167632251 + AluSx SINE Alu 1 303 -9 254 316 106 52 chr6 14783216 14783621 -167631621 - L1ME LINE L1 -335 5786 5360 27 0 0 0 chr6 14783764 14783791 -167631451 + AT_rich Low_complexity Low_complexity 1 27 0 315 108 31 108 chr6 14783844 14783885 -167631357 - MER41D LTR ERV1 0 557 521 2040 122 140 34 chr6 14783885 14784102 -167631140 - MSTA LTR MaLR 0 428 235 1904 162 0 3 chr6 14784102 14784398 -167630844 - AluSx SINE Alu -17 295 1 2040 122 140 34 chr6 14784398 14784566 -167630676 - MSTA LTR MaLR -193 235 2 315 108 31 108 chr6 14784566 14784589 -167630653 - MER41D LTR ERV1 -36 521 498 193 191 24 0 chr6 14784595 14784637 -167630605 - MER5B DNA MER1_type -134 44 2 369 0 0 0 chr6 14784661 14784702 -167630540 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 330 28 18 chr6 14785332 14785441 -167629801 - MIR SINE MIR 0 262 153 324 243 200 37 chr6 14785819 14786144 -167629098 + L1MC4a LINE L1 5852 6229 -1579 724 130 32 24 chr6 14786570 14786693 -167628549 + FLAM_C SINE Alu 15 138 -5 1718 230 20 81 chr6 14786711 14786920 -167628322 + L1MC5 LINE L1 6657 6877 -1084 1936 120 0 0 chr6 14786920 14787178 -167628064 + AluSx SINE Alu 39 296 -16 1718 230 20 81 chr6 14787178 14787577 -167627665 + L1MC5 LINE L1 6877 7228 -733 4045 130 13 8 chr6 14787618 14788250 -167626992 + MER41B LTR ERV1 1 635 0 421 195 0 0 chr6 14788322 14788399 -167626843 - MLT1C LTR MaLR -184 283 207 536 177 83 44 chr6 14788435 14788616 -167626626 + L1MC5 LINE L1 7309 7496 -465 1932 183 93 45 chr6 14788619 14789015 -167626227 + MLT1C LTR MaLR 1 377 -90 2116 116 10 3 chr6 14789015 14789318 -167625924 - AluSx SINE Alu -7 305 1 1932 183 93 45 chr6 14789318 14789347 -167625895 + MLT1C LTR MaLR 377 403 -64 4860 83 40 16 chr6 14789347 14790022 -167625220 + LTR8 LTR ERV1 1 691 0 1932 183 93 45 chr6 14790022 14790037 -167625205 + MLT1C LTR MaLR 403 463 -4 917 203 146 22 chr6 14790043 14790364 -167624878 + L1MC5 LINE L1 7495 7855 -106 326 240 96 68 chr6 14790417 14790563 -167624679 + MER63 DNA MER1_type 687 1060 0 2204 105 0 22 chr6 14790647 14790824 -167624418 - AluSp SINE Alu -7 306 138 2486 92 0 0 chr6 14790824 14791128 -167624114 - AluSc SINE Alu -5 304 1 2204 105 0 22 chr6 14791128 14791263 -167623979 - AluSp SINE Alu -175 138 1 1371 190 129 92 chr6 14791323 14791822 -167623420 - LTR48 LTR ERV1 0 644 161 1877 141 0 17 chr6 14791822 14792113 -167623129 + AluJo SINE Alu 1 286 -26 1371 190 129 92 chr6 14792113 14792281 -167622961 - LTR48 LTR ERV1 -483 161 1 590 221 66 0 chr6 14792299 14792435 -167622807 + MIR SINE MIR 56 200 -62 27 0 0 0 chr6 14793058 14793085 -167622157 + AT_rich Low_complexity Low_complexity 1 27 0 396 285 13 20 chr6 14793718 14793869 -167621373 + MIR SINE MIR 80 229 -33 21 0 0 0 chr6 14793952 14793973 -167621269 + AT_rich Low_complexity Low_complexity 1 21 0 309 26 0 0 chr6 14794480 14794518 -167620724 + (TC)n Simple_repeat Simple_repeat 2 39 0 341 153 14 0 chr6 14794518 14794590 -167620652 + (TA)n Simple_repeat Simple_repeat 1 73 0 2210 105 3 0 chr6 14794590 14794875 -167620367 - AluSp SINE Alu -24 289 4 293 281 95 71 chr6 14795024 14795102 -167620140 + L2 LINE L2 2344 2419 -895 2631 181 50 6 chr6 14795102 14795599 -167619643 - LTR53 LTR ERVL 0 519 1 293 281 95 71 chr6 14795599 14795858 -167619384 + L2 LINE L2 2419 2689 -625 * 400 254 44 0 chr6 14795840 14795954 -167619288 - MER91A DNA MER1_type -76 120 2 254 332 113 43 chr6 14796083 14796481 -167618761 + L2 LINE L2 2828 3253 -19 222 37 0 0 chr6 14796573 14796600 -167618642 + (GA)n Simple_repeat Simple_repeat 2 28 0 480 111 0 0 chr6 14796612 14796684 -167618558 + (TA)n Simple_repeat Simple_repeat 2 73 0 256 289 44 0 chr6 14797219 14797309 -167617933 - MIR3 SINE MIR -8 200 107 2304 99 10 0 chr6 14797700 14798002 -167617240 - AluSp SINE Alu -6 307 3 248 306 0 0 chr6 14799153 14799215 -167616027 - MLT1I LTR MaLR -123 286 225 * 319 286 28 62 chr6 14799204 14799382 -167615860 - MLT1H LTR MaLR -281 268 97 2600 50 0 0 chr6 14799786 14800085 -167615157 - AluY SINE Alu -12 299 1 1851 158 66 34 chr6 14800868 14801217 -167614025 - MLT1A1 LTR MaLR -5 360 1 314 299 10 0 chr6 14802148 14802245 -167612997 + L1ME4a LINE L1 5955 6052 -69 734 267 98 7 chr6 14802246 14802531 -167612711 + MARNA DNA Mariner 261 571 -15 395 289 59 70 chr6 14803654 14804076 -167611166 - MLT1H LTR MaLR -2 565 46 190 259 0 17 chr6 14804518 14804576 -167610666 + MIR3 SINE MIR 142 198 -10 1112 105 0 20 chr6 14804851 14805004 -167610238 + AluSq/x SINE Alu 1 150 -162 282 56 0 0 chr6 14805004 14805040 -167610202 + (CA)n Simple_repeat Simple_repeat 1 36 0 191 285 8 98 chr6 14805359 14805482 -167609760 + L2 LINE L2 3202 3313 0 898 299 97 24 chr6 14807210 14807718 -167607524 - MLT1K LTR MaLR -18 570 26 243 274 0 24 chr6 14807734 14807811 -167607431 - L1MC4a LINE L1 -1631 6177 6101 2274 108 3 0 chr6 14807811 14808107 -167607135 + AluSq SINE Alu 1 297 -16 531 160 0 0 chr6 14808113 14808207 -167607035 + GA-rich Low_complexity Low_complexity 3 96 0 2003 44 0 48 chr6 14808349 14808600 -167606642 + AluY SINE Alu 54 292 -19 2452 254 51 37 chr6 14808608 14809157 -167606085 - L1MC4a LINE L1 -748 5398 5366 2272 108 0 13 chr6 14809157 14809473 -167605769 - AluSx SINE Alu 0 312 1 2452 254 51 37 chr6 14809473 14810108 -167605134 - L1MC4a LINE L1 -780 5366 4742 1778 149 22 0 chr6 14810150 14810418 -167604824 - AluJb SINE Alu -18 294 21 874 261 327 10 chr6 14810427 14811296 -167603946 - L2 LINE L2 -1592 1722 579 2207 105 7 26 chr6 14812205 14812511 -167602731 - AluSq SINE Alu -13 300 1 209 289 53 13 chr6 14814061 14814137 -167601105 + MIR SINE MIR 112 190 -72 529 254 133 38 chr6 14815242 14815482 -167599760 + Charlie8 DNA MER1_type 2 264 -2153 336 238 31 85 chr6 14815867 14816064 -167599178 - MLT1H LTR MaLR -200 349 131 4182 124 17 71 chr6 14816064 14816302 -167598940 + LTR62 LTR ERVK 1 250 -469 2359 109 0 0 chr6 14816302 14816614 -167598628 - AluSq SINE Alu -1 312 1 4182 124 17 71 chr6 14816614 14817135 -167598107 + LTR62 LTR ERVK 250 719 0 336 238 31 85 chr6 14817135 14817161 -167598081 - MLT1H LTR MaLR -418 131 105 1831 270 58 13 chr6 14817229 14817751 -167597491 + MER77 LTR ERV1 54 598 -7 726 280 109 25 chr6 14817895 14818263 -167596979 - L2 LINE L2 0 3313 2915 21 0 0 0 chr6 14818295 14818316 -167596926 + AT_rich Low_complexity Low_complexity 1 21 0 2080 139 30 0 chr6 14818319 14818621 -167596621 + AluSx SINE Alu 1 311 -1 210 71 0 0 chr6 14818621 14818649 -167596593 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 880 93 0 0 chr6 14819846 14819954 -167595288 + FLAM_C SINE Alu 1 108 -35 1413 281 101 65 chr6 14820906 14821540 -167593702 + L1ME4a LINE L1 59 746 -5373 1870 111 92 0 chr6 14821540 14821811 -167593431 + AluSq SINE Alu 3 298 -15 1413 281 101 65 chr6 14821811 14822220 -167593022 + L1ME4a LINE L1 746 1139 -4980 2414 81 3 13 chr6 14822317 14822627 -167592615 + AluSx SINE Alu 1 307 -5 403 301 135 17 chr6 14822644 14822933 -167592309 + HAL1 LINE L1 1433 1755 -752 2032 121 45 0 chr6 14823214 14823386 -167591856 - AluSx SINE Alu -7 305 113 198 0 0 0 chr6 14823386 14823408 -167591834 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2032 121 45 0 chr6 14823408 14823525 -167591717 - AluSx SINE Alu -199 113 3 368 255 216 33 chr6 14823614 14823850 -167591392 + L1ME4a LINE L1 2093 2284 -3845 2409 83 10 0 chr6 14823850 14824151 -167591091 + AluSg SINE Alu 1 304 -6 368 255 216 33 chr6 14824151 14824580 -167590662 + L1ME4a LINE L1 2284 2880 -3249 1299 277 88 34 chr6 14824635 14824967 -167590275 + L1ME4a LINE L1 4312 4625 -1504 1900 128 3 54 chr6 14824967 14825280 -167589962 - AluJb SINE Alu -15 297 1 1299 277 88 34 chr6 14825280 14825853 -167589389 + L1ME4a LINE L1 4625 5266 -863 898 134 8 0 chr6 14825994 14826121 -167589121 + FLAM_C SINE Alu 1 128 -5 1798 35 22 35 chr6 14826336 14826566 -167588676 + AluY SINE Alu 80 306 -5 252 193 137 13 chr6 14826677 14826772 -167588470 + L1M1 LINE L1 5476 5584 -561 649 241 145 68 chr6 14826786 14827213 -167588029 + L1ME4a LINE L1 5421 5880 -224 21 36 0 0 chr6 14827289 14827317 -167587925 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 14827814 14827835 -167587407 + GC_rich Low_complexity Low_complexity 1 21 0 340 147 11 32 chr6 14827835 14827930 -167587312 + G-rich Low_complexity Low_complexity 6 98 0 682 277 21 25 chr6 14829685 14829920 -167585322 - MIR SINE MIR -10 252 19 1789 164 0 24 chr6 14831464 14831751 -167583491 - AluJb SINE Alu -20 292 13 804 136 7 57 chr6 14831778 14831918 -167583324 + FLAM_C SINE Alu 1 133 0 2384 99 0 3 chr6 14833373 14833685 -167581557 - AluSq SINE Alu -2 311 1 2056 200 51 16 chr6 14835074 14835524 -167579718 + MLT1C LTR MaLR 2 467 0 355 167 0 17 chr6 14835658 14835718 -167579524 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 273 61 0 0 chr6 14835701 14835734 -167579508 - Tigger4(Zombi) DNA MER2_type -2698 33 1 * 308 300 126 17 chr6 14836288 14836476 -167578766 - MIR SINE MIR -51 211 6 255 318 56 39 chr6 14836658 14836837 -167578405 - MIR SINE MIR -78 184 3 2254 118 0 3 chr6 14837271 14837576 -167577666 - AluSx SINE Alu -8 304 1 279 0 0 0 chr6 14840120 14840151 -167575091 + (TG)n Simple_repeat Simple_repeat 2 32 0 1739 153 3 29 chr6 14840729 14841037 -167574205 + AluJo SINE Alu 1 300 -12 215 245 296 13 chr6 14842463 14842622 -167572620 + L2 LINE L2 3104 3307 -6 548 271 70 35 chr6 14842741 14842970 -167572272 + MIR SINE MIR 18 254 -8 219 195 0 0 chr6 14843651 14843692 -167571550 + MIR SINE MIR 108 148 -114 373 194 54 43 chr6 14844941 14845034 -167570208 - L2 LINE L2 -25 3247 3154 971 103 7 0 chr6 14847006 14847151 -167568091 + L1PA13 LINE L1 6018 6163 0 2482 65 0 0 chr6 14847556 14847850 -167567392 + AluY SINE Alu 1 294 -17 525 319 60 13 chr6 14847968 14848203 -167567039 + MIR SINE MIR 9 254 -8 2283 99 3 0 chr6 14848502 14848795 -167566447 + AluSg SINE Alu 1 294 -16 225 0 0 0 chr6 14848811 14848836 -167566406 + (GA)n Simple_repeat Simple_repeat 2 26 0 2530 33 7 23 chr6 14850511 14850813 -167564429 + AluY SINE Alu 3 299 -12 194 307 67 13 chr6 14852186 14852261 -167562981 - MIR SINE MIR -51 211 133 356 234 94 23 chr6 14852579 14852707 -167562535 + MER117 DNA MER1_type 5 141 -56 1849 197 95 12 chr6 14852718 14853149 -167562093 + MLT1C LTR MaLR 1 467 0 286 198 105 23 chr6 14853776 14853862 -167561380 + MIR SINE MIR 115 207 -55 180 0 0 0 chr6 14854152 14854172 -167561070 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1881 113 0 82 chr6 14854439 14854757 -167560485 + AluJb SINE Alu 1 292 -20 346 287 37 24 chr6 14856193 14856339 -167558903 - MIR SINE MIR -62 146 11 261 163 0 0 chr6 14857281 14857330 -167557912 + (TG)n Simple_repeat Simple_repeat 2 50 0 1319 189 69 71 chr6 14857410 14857802 -167557440 + MER96B DNA MER1_type? 25 415 -2 425 316 105 46 chr6 14858950 14859387 -167555855 - HAL1 LINE L1 -1855 652 190 591 15 0 0 chr6 14861778 14861846 -167553396 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2253 98 14 7 chr6 14861846 14862131 -167553111 - AluSp SINE Alu -23 290 1 633 156 7 14 chr6 14862290 14862431 -167552811 + CT-rich Low_complexity Low_complexity 2 141 0 768 286 86 26 chr6 14862535 14862874 -167552368 - L3 LINE CR1 -695 882 524 449 330 44 76 chr6 14863782 14864491 -167550751 + L2 LINE L2 2217 2902 -412 21 0 0 0 chr6 14865040 14865061 -167550181 + AT_rich Low_complexity Low_complexity 1 21 0 390 151 0 0 chr6 14865184 14865257 -167549985 + CT-rich Low_complexity Low_complexity 2 74 0 463 211 37 9 chr6 14865504 14865613 -167549629 + MLT1F1 LTR MaLR 6 117 -450 1460 251 99 12 chr6 14865703 14866190 -167549052 - L1MC4a LINE L1 -1963 5845 5317 484 264 112 48 chr6 14866447 14866742 -167548500 - L1MC4a LINE L1 -1095 5051 4738 317 137 20 0 chr6 14866749 14866800 -167548442 + U7 snRNA snRNA 2 53 -10 1423 187 87 22 chr6 14866835 14867156 -167548086 - MER2 DNA MER2_type -2 342 1 963 26 0 0 chr6 14867330 14867444 -167547798 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 1622 188 35 0 chr6 14867467 14867754 -167547488 - AluJo SINE Alu -15 297 1 488 258 0 39 chr6 14868080 14868208 -167547034 - L2 LINE L2 0 3313 3191 361 125 33 33 chr6 14868234 14868354 -167546888 + (TA)n Simple_repeat Simple_repeat 2 121 0 413 323 30 36 chr6 14868600 14868767 -167546475 + MLT1K LTR MaLR 252 417 -171 1461 135 107 21 chr6 14868811 14869092 -167546150 + MSTA LTR MaLR 1 305 -123 4867 150 18 32 chr6 14869096 14870092 -167545150 - MER11C LTR ERVK 0 1071 1 746 154 88 0 chr6 14870092 14870209 -167545033 + MSTA LTR MaLR 300 428 0 237 222 48 32 chr6 14870213 14870276 -167544966 + MLT1K LTR MaLR 465 528 -60 373 220 48 30 chr6 14871044 14871211 -167544031 + MER20B DNA MER1_type 1 172 -47 206 32 32 0 chr6 14871730 14871761 -167543481 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1677 111 7 117 chr6 14871765 14872072 -167543170 - AluSg SINE Alu -37 273 1 2254 84 42 0 chr6 14873744 14874030 -167541212 - AluSc SINE Alu -11 298 1 249 33 0 0 chr6 14874123 14874153 -167541089 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1932 164 50 24 chr6 14874698 14875077 -167540165 + MLT1B LTR MaLR 1 389 -1 2427 69 30 3 chr6 14876601 14876904 -167538338 + AluY SINE Alu 1 311 0 236 239 87 11 chr6 14877742 14877834 -167537408 - MER5C DNA MER1_type -8 316 218 319 262 56 19 chr6 14877863 14877970 -167537272 - MER5C DNA MER1_type -212 112 2 221 313 162 0 chr6 14878342 14878441 -167536801 - L2 LINE L2 0 3313 3199 541 205 0 31 chr6 14879393 14879520 -167535722 + L2 LINE L2 3190 3312 -1 1908 211 54 18 chr6 14880478 14881049 -167534193 + L1MB7 LINE L1 1431 2115 -4269 * 2345 200 97 35 chr6 14881048 14881727 -167533515 + L1MB7 LINE L1 3635 4355 -2027 3736 154 71 43 chr6 14881746 14882238 -167533004 + L1MB7 LINE L1 4849 5326 -1094 2220 109 20 0 chr6 14882238 14882542 -167532700 + AluSx SINE Alu 3 312 0 3736 154 71 43 chr6 14882542 14883496 -167531746 + L1MB7 LINE L1 5326 6323 -97 962 159 12 18 chr6 14883502 14883672 -167531570 + AluJo SINE Alu 121 289 -23 290 197 14 0 chr6 14883679 14883750 -167531492 + L1MB3 LINE L1 6111 6182 -1 512 214 162 12 chr6 14883851 14884024 -167531218 - ORSL DNA AcHobo -76 199 1 21 0 0 0 chr6 14884536 14884557 -167530685 + AT_rich Low_complexity Low_complexity 1 21 0 462 193 73 27 chr6 14885646 14885796 -167529446 + MIR3 SINE MIR 22 178 -30 1910 199 146 7 chr6 14885876 14886314 -167528928 + MLT1D LTR MaLR 7 505 0 362 311 25 12 chr6 14888833 14888994 -167526248 + MIR SINE MIR 65 227 -35 1626 123 119 12 chr6 14889113 14889397 -167525845 + AluSg SINE Alu 1 311 0 491 270 15 115 chr6 14890505 14890645 -167524597 - MIR SINE MIR 0 262 160 2118 132 3 0 chr6 14890645 14890940 -167524302 - AluSx SINE Alu -16 296 1 491 270 15 115 chr6 14890940 14891069 -167524173 - MIR SINE MIR -102 160 20 203 159 45 0 chr6 14891246 14891290 -167523952 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2316 111 0 0 chr6 14892490 14892796 -167522446 - AluSx SINE Alu -6 306 1 291 104 0 0 chr6 14893345 14893393 -167521849 + (TG)n Simple_repeat Simple_repeat 1 48 0 273 228 0 18 chr6 14894605 14894662 -167520580 - L2 LINE L2 0 3272 3217 1724 169 7 3 chr6 14895274 14895575 -167519667 - AluJo SINE Alu -10 302 1 1414 197 76 80 chr6 14895689 14896151 -167519091 + MLT1C LTR MaLR 8 467 0 449 300 22 39 chr6 14896153 14896333 -167518909 - MIR SINE MIR -76 186 10 1703 113 57 47 chr6 14896988 14897289 -167517953 - AluSx SINE Alu -8 304 1 453 181 12 0 chr6 14897301 14897384 -167517858 - MER5A DNA MER1_type -84 105 22 555 250 6 121 chr6 14897425 14897781 -167517461 - L1ME4a LINE L1 -225 5896 5582 765 181 0 0 chr6 14898389 14898516 -167516726 - FLAM_A SINE Alu -6 127 1 182 222 0 0 chr6 14899317 14899362 -167515880 + L2 LINE L2 3264 3308 -5 525 212 10 0 chr6 14899362 14899461 -167515781 - MER117 DNA MER1_type -97 100 1 200 170 213 0 chr6 14901530 14901577 -167513665 + L2 LINE L2 3235 3291 -22 462 244 119 28 chr6 14901634 14901810 -167513432 + MIR SINE MIR 68 259 -3 221 136 0 23 chr6 14902456 14902500 -167512742 + (TTC)n Simple_repeat Simple_repeat 2 44 0 218 280 28 65 chr6 14903604 14903711 -167511531 - MER5A DNA MER1_type -1 188 86 350 231 215 92 chr6 14905463 14905658 -167509584 + MIR SINE MIR 12 230 -32 388 267 20 0 chr6 14905921 14906022 -167509220 - MIR SINE MIR -10 252 150 4020 153 24 13 chr6 14906023 14906721 -167508521 + MER50 LTR ERV1 1 706 -28 449 262 16 48 chr6 14906730 14906856 -167508386 - MIR SINE MIR -111 151 30 211 234 0 0 chr6 14906862 14906909 -167508333 + T-rich Low_complexity Low_complexity 1 47 0 227 306 47 35 chr6 14906953 14907038 -167508204 + L2 LINE L2 3222 3307 -6 285 277 40 62 chr6 14907356 14907528 -167507714 + MIR SINE MIR 16 190 -18 255 329 71 35 chr6 14907590 14907760 -167507482 - MLT1J2 LTR MaLR -13 437 262 350 206 28 65 chr6 14907810 14907917 -167507325 - MLT1J2 LTR MaLR -321 129 27 657 281 139 8 chr6 14908927 14909165 -167506077 + L2 LINE L2 3042 3310 -3 935 249 190 57 chr6 14909868 14910346 -167504896 + MLT1F LTR MaLR 1 542 0 2086 178 5 22 chr6 14910431 14910482 -167504760 - MLT1A1 LTR MaLR 0 365 315 2297 130 92 27 chr6 14910482 14910883 -167504359 + MSTA LTR MaLR 2 428 0 2086 178 5 22 chr6 14910883 14911201 -167504041 - MLT1A1 LTR MaLR -50 315 2 484 302 58 9 chr6 14911441 14911666 -167503576 - MLT1K LTR MaLR -15 573 338 347 264 25 33 chr6 14911934 14912055 -167503187 - MIR3 SINE MIR -80 128 9 323 308 48 27 chr6 14912094 14912240 -167503002 - MIR SINE MIR -19 243 95 582 229 0 0 chr6 14912519 14912761 -167502481 + (CA)n Simple_repeat Simple_repeat 1 242 0 311 274 129 23 chr6 14913555 14913728 -167501514 + MIR SINE MIR 12 206 -56 268 337 154 35 chr6 14914973 14915142 -167500100 - MIR3 SINE MIR -13 195 7 1788 112 81 0 chr6 14915468 14915753 -167499489 - AluSx SINE Alu -4 308 1 666 235 207 5 chr6 14916803 14917020 -167498222 + MIR SINE MIR 2 262 0 257 320 21 41 chr6 14917045 14917142 -167498100 - MIR3 SINE MIR -45 163 69 309 146 0 0 chr6 14919093 14919141 -167496101 - MIR3 SINE MIR -48 160 113 200 271 59 68 chr6 14919163 14919281 -167495961 - MIR SINE MIR -98 164 48 263 172 78 16 chr6 14919538 14919602 -167495640 + L2 LINE L2 3236 3303 -10 2009 118 7 0 chr6 14919781 14920070 -167495172 + AluSq SINE Alu 1 291 -22 240 301 92 68 chr6 14920290 14920453 -167494789 + L3b LINE CR1 1329 1495 -88 221 128 21 0 chr6 14920583 14920630 -167494612 + GA-rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr6 14921447 14921489 -167493753 + GC_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr6 14921842 14921863 -167493379 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1621 184 29 0 chr6 14923335 14923612 -167491630 + MLT1A1 LTR MaLR 1 285 -80 533 274 70 13 chr6 14923908 14924065 -167491177 - MIR SINE MIR -51 211 46 805 278 76 23 chr6 14924281 14924623 -167490619 - MARNA DNA Mariner -166 420 61 1728 136 4 7 chr6 14924741 14925021 -167490221 - AluJb SINE Alu 0 312 34 279 206 118 0 chr6 14925742 14925810 -167489432 + MLT1L LTR MaLR 23 98 -517 923 225 37 0 chr6 14925843 14926034 -167489208 + MER58A DNA MER1_type 27 224 0 674 276 69 20 chr6 14926034 14926419 -167488823 + MLT1L LTR MaLR 148 597 -18 554 315 80 14 chr6 14926547 14926760 -167488482 - MIR SINE MIR -34 228 2 248 314 176 0 chr6 14926765 14926867 -167488375 + MIR SINE MIR 32 151 -111 2071 201 50 10 chr6 14929386 14929785 -167485457 - MLT1F LTR MaLR -4 538 124 736 258 122 14 chr6 14930087 14930300 -167484942 - MIR SINE MIR 0 262 27 329 231 15 0 chr6 14930484 14930549 -167484693 + LTR33 LTR ERVL 306 371 -150 668 144 152 8 chr6 14930552 14930682 -167484560 + MLT1D LTR MaLR 1 149 -356 1025 228 46 95 chr6 14930682 14930864 -167484378 - MER39 LTR ERV1 0 707 518 1727 134 48 3 chr6 14930864 14931156 -167484086 - AluSg SINE Alu -5 305 1 1025 228 46 95 chr6 14931156 14931503 -167483739 - MER39 LTR ERV1 -189 518 5 938 214 83 76 chr6 14931519 14931719 -167483523 + MLT1D LTR MaLR 166 370 -135 2151 110 0 3 chr6 14931719 14932028 -167483214 - AluSq SINE Alu -4 309 2 938 214 83 76 chr6 14932028 14932116 -167483126 + MLT1D LTR MaLR 370 456 -49 603 295 4 100 chr6 14934229 14934500 -167480742 + MIR SINE MIR 18 262 0 446 353 14 45 chr6 14935708 14936000 -167479242 - L2 LINE L2 -342 2972 2690 1138 270 42 15 chr6 14936505 14936838 -167478404 - MLT1I LTR MaLR -2 407 66 946 296 113 22 chr6 14937460 14938110 -167477132 + L2 LINE L2 2573 3311 -2 2023 106 0 13 chr6 14938555 14938856 -167476386 + AluSq SINE Alu 1 297 -16 248 306 0 0 chr6 14939853 14939915 -167475327 + MIR SINE MIR 190 251 -11 * 362 361 38 0 chr6 14939882 14940015 -167475227 - MIR SINE MIR -33 229 92 619 278 16 14 chr6 14940015 14940250 -167474992 - LTR33 LTR ERVL -2 519 278 283 221 0 29 chr6 14940561 14940665 -167474577 + CT-rich Low_complexity Low_complexity 4 104 0 208 297 136 17 chr6 14941152 14941270 -167473972 + MIR SINE MIR 19 150 -112 355 293 54 54 chr6 14942076 14942223 -167473019 + MIR SINE MIR 36 147 -61 192 188 0 0 chr6 14942226 14942258 -167472984 - L2 LINE L2 0 3313 3282 289 317 73 8 chr6 14942398 14942521 -167472721 - L2 LINE L2 -188 3084 2954 191 344 16 0 chr6 14942686 14942750 -167472492 - L2 LINE L2 -560 2754 2690 2402 84 0 0 chr6 14942753 14943064 -167472178 + AluSq SINE Alu 1 311 -2 1450 241 103 21 chr6 14943143 14943611 -167471631 + LTR33 LTR ERVL 7 512 -9 426 310 195 24 chr6 14943678 14944181 -167471061 - L2 LINE L2 -747 2567 1979 1017 178 70 37 chr6 14944758 14945015 -167470227 - L1MB2 LINE L1 0 6171 5907 513 221 0 0 chr6 14945019 14945123 -167470119 + Tigger7 DNA MER2_type 3 106 -2381 730 127 0 51 chr6 14945134 14945252 -167469990 + FLAM_C SINE Alu 13 124 -19 562 269 0 0 chr6 14945255 14945374 -167469868 + Tigger7 DNA MER2_type 101 219 -2268 563 140 35 53 chr6 14945375 14945407 -167469835 + Tigger7 DNA MER2_type 2380 2411 -80 2527 116 5 18 chr6 14945407 14945787 -167469455 + THE1C LTR MaLR 1 375 0 563 140 35 53 chr6 14945787 14945868 -167469374 + Tigger7 DNA MER2_type 2411 2491 0 508 200 42 58 chr6 14945868 14945988 -167469254 - L1MB3 LINE L1 -277 5906 5789 633 255 42 23 chr6 14947830 14948046 -167467196 + MIR SINE MIR 32 251 -11 413 284 148 6 chr6 14948117 14948286 -167466956 + MIR SINE MIR 51 243 -19 270 0 0 0 chr6 14948293 14948323 -167466919 + (TTA)n Simple_repeat Simple_repeat 3 32 0 207 0 0 0 chr6 14948448 14948471 -167466771 + (T)n Simple_repeat Simple_repeat 1 23 0 449 272 133 19 chr6 14949448 14949841 -167465401 + L1MC4a LINE L1 5176 5614 -507 307 284 99 67 chr6 14949854 14950167 -167465075 + L1MC4a LINE L1 5642 5964 -1844 351 60 0 0 chr6 14950270 14950320 -167464922 + (TG)n Simple_repeat Simple_repeat 1 50 0 1243 186 109 0 chr6 14950918 14951192 -167464050 + MER33 DNA MER1_type 1 304 -20 333 0 0 0 chr6 14952611 14952648 -167462594 + (CA)n Simple_repeat Simple_repeat 1 37 0 720 119 18 0 chr6 14953124 14953233 -167462009 - L1PA14 LINE L1 -522 5639 5529 3868 78 6 4 chr6 14953233 14953742 -167461500 + L1PA14 LINE L1 5642 6158 -3 348 288 51 0 chr6 14953785 14953903 -167461339 - MIR SINE MIR -29 233 110 262 180 82 16 chr6 14953913 14953974 -167461268 - MLT1I LTR MaLR -9 400 336 248 211 44 56 chr6 14954608 14954698 -167460544 - MIR SINE MIR -170 92 4 793 177 78 16 chr6 14954955 14955147 -167460095 - MER3 DNA MER1_type -4 205 2 2205 99 0 3 chr6 14955247 14955565 -167459677 + AluSg SINE Alu 1 317 0 391 161 49 37 chr6 14956323 14956404 -167458838 + MER103 DNA DNA 77 158 -8 4279 214 74 35 chr6 14957452 14958071 -167457171 + L1ME2 LINE L1 3915 4508 -1656 1835 159 0 7 chr6 14958071 14958354 -167456888 + AluJo SINE Alu 1 281 -31 4279 214 74 35 chr6 14958354 14959897 -167455345 + L1ME2 LINE L1 4508 6163 -1 372 285 64 29 chr6 14960165 14960337 -167454905 + MIR SINE MIR 14 191 -71 239 283 201 0 chr6 14961330 14961489 -167453753 + MIR SINE MIR 64 254 -8 2214 121 84 53 chr6 14961756 14962171 -167453071 - MSTA LTR MaLR 0 428 1 542 92 0 11 chr6 14962173 14962260 -167452982 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 2168 111 10 3 chr6 14964254 14964551 -167450691 - AluSx SINE Alu -13 299 1 2373 142 21 8 chr6 14964818 14965198 -167450044 - MER57A LTR ERV1 -18 385 1 2285 107 3 0 chr6 14965418 14965718 -167449524 + AluSx SINE Alu 1 301 -11 519 200 20 0 chr6 14965736 14965836 -167449406 + MIR3 SINE MIR 53 154 -54 4714 153 63 39 chr6 14966787 14967679 -167447563 - MER21A LTR ERV1 0 931 19 357 297 100 75 chr6 14967741 14967808 -167447434 - L3 LINE CR1 -1 1576 1512 601 174 92 76 chr6 14967808 14967872 -167447370 + MER5A DNA MER1_type 1 62 -127 2318 94 0 3 chr6 14967872 14968169 -167447073 + AluSg SINE Alu 15 310 0 601 174 92 76 chr6 14968169 14968288 -167446954 + MER5A DNA MER1_type 62 187 -2 357 297 100 75 chr6 14968288 14968459 -167446783 - L3 LINE CR1 -65 1512 1332 312 91 0 0 chr6 14969146 14969190 -167446052 + (GGA)n Simple_repeat Simple_repeat 1 44 0 216 254 232 43 chr6 14970567 14970705 -167444537 + MIR SINE MIR 20 183 -79 26 0 0 0 chr6 14970785 14970811 -167444431 + AT_rich Low_complexity Low_complexity 1 26 0 456 295 73 33 chr6 14971342 14971671 -167443571 + L1MCa LINE L1 1252 1593 -4833 * 586 286 79 10 chr6 14971668 14971958 -167443284 + L1MCa LINE L1 2801 3110 -3316 3014 279 76 48 chr6 14972106 14974547 -167440695 + L1MCa LINE L1 3408 5919 -531 975 207 38 114 chr6 14974700 14974954 -167440288 - MER39 LTR ERV1 -83 624 409 2527 93 0 0 chr6 14974954 14975267 -167439975 + AluSp SINE Alu 1 313 0 975 207 38 114 chr6 14975267 14975408 -167439834 - MER39 LTR ERV1 -298 409 259 852 260 73 74 chr6 14975911 14976388 -167438854 - MLT1L LTR MaLR 0 615 73 2091 110 32 0 chr6 14977861 14978143 -167437099 + AluSq SINE Alu 1 291 -22 466 138 11 23 chr6 14978166 14978253 -167436989 - L1MB8 LINE L1 0 6178 6093 551 218 21 21 chr6 14978265 14978407 -167436835 - L1MB4 LINE L1 -1 6179 6038 733 165 33 0 chr6 14978503 14978624 -167436618 + FLAM_C SINE Alu 2 126 -7 252 250 56 0 chr6 14978635 14978707 -167436535 - MER91A DNA MER1_type -92 104 29 1359 229 75 48 chr6 14979094 14979549 -167435693 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr6 14980316 14980345 -167434897 + AT_rich Low_complexity Low_complexity 1 29 0 549 228 85 76 chr6 14980960 14981171 -167434071 - MIR SINE MIR -3 259 47 180 0 0 0 chr6 14981673 14981693 -167433549 + (T)n Simple_repeat Simple_repeat 1 20 0 2314 159 62 154 chr6 14982163 14982960 -167432282 + LTR8A LTR ERV1 1 723 -4 205 314 71 0 chr6 14983258 14983328 -167431914 + L2 LINE L2 3146 3220 -52 1304 202 88 62 chr6 14984404 14984824 -167430418 - MER31B LTR ERV1 -29 437 7 249 219 27 55 chr6 14985051 14985124 -167430118 - L2 LINE L2 0 3313 3243 1079 265 98 14 chr6 14986189 14986627 -167428615 - LTR16C LTR ERVL 0 491 17 707 169 7 0 chr6 14987153 14987301 -167427941 + CT-rich Low_complexity Low_complexity 2 150 0 859 254 157 34 chr6 14987707 14988395 -167426847 + L2 LINE L2 2542 3309 -4 186 265 0 0 chr6 14988756 14988824 -167426418 + GA-rich Low_complexity Low_complexity 4 71 0 212 141 28 70 chr6 14989438 14989451 -167425791 + A-rich Low_complexity Low_complexity 3 15 -55 2086 121 6 16 chr6 14989451 14989766 -167425476 + AluSx SINE Alu 1 312 0 212 141 28 70 chr6 14989766 14989823 -167425419 + A-rich Low_complexity Low_complexity 15 70 0 1649 168 43 45 chr6 14990367 14990742 -167424500 - MLT1A2 LTR MaLR 0 374 1 282 317 135 0 chr6 14991896 14992000 -167423242 + MIR3 SINE MIR 64 181 -27 189 0 0 0 chr6 14993571 14993592 -167421650 + (CA)n Simple_repeat Simple_repeat 2 22 0 405 0 0 0 chr6 14993892 14993937 -167421305 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 302 211 28 14 chr6 14994483 14994554 -167420688 + GA-rich Low_complexity Low_complexity 3 74 0 258 32 0 0 chr6 14994620 14994651 -167420591 + (TG)n Simple_repeat Simple_repeat 2 32 0 291 309 36 18 chr6 14994713 14994823 -167420419 + MER91A DNA MER1_type 60 171 -25 831 168 70 0 chr6 14995026 14995169 -167420073 + FRAM SINE Alu 8 160 -16 1165 213 67 59 chr6 14997163 14997534 -167417708 - MER21B LTR ERV1 -109 754 381 563 315 18 22 chr6 14997731 14997953 -167417289 - MER21B LTR ERV1 -483 380 160 * 712 274 28 30 chr6 14997936 14998243 -167416999 - MER21B LTR ERV1 -400 205 49 714 245 147 64 chr6 14998300 14998736 -167416506 + MLT1H LTR MaLR 78 549 0 321 277 118 73 chr6 14999150 14999464 -167415778 - MLT1J1 LTR MaLR -26 420 93 3031 61 3 13 chr6 14999575 14999966 -167415276 + L1PA6 LINE L1 5767 6153 -1 267 217 17 0 chr6 15001023 15001083 -167414159 + GA-rich Low_complexity Low_complexity 3 63 0 21 0 0 0 chr6 15001649 15001670 -167413572 + AT_rich Low_complexity Low_complexity 1 21 0 570 235 122 20 chr6 15002339 15002535 -167412707 + LTR33 LTR ERVL 1 216 -305 294 276 51 32 chr6 15002542 15002698 -167412544 + LTR33 LTR ERVL 363 521 0 2277 88 7 7 chr6 15002734 15003029 -167412213 - AluSg SINE Alu -15 295 1 398 264 66 8 chr6 15003030 15003151 -167412091 - MIR SINE MIR -19 243 116 276 77 0 0 chr6 15004144 15004183 -167411059 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 303 85 0 0 chr6 15004190 15004237 -167411005 + (CA)n Simple_repeat Simple_repeat 1 47 0 212 381 0 0 chr6 15004269 15004353 -167410889 + L2 LINE L2 3186 3269 -3 1852 145 16 3 chr6 15004933 15005237 -167410005 - L1M1 LINE L1 -6168 1397 1090 234 128 0 0 chr6 15006364 15006403 -167408839 + (CA)n Simple_repeat Simple_repeat 2 40 0 2230 116 0 0 chr6 15006788 15007082 -167408160 - AluSg SINE Alu -16 294 1 907 147 0 14 chr6 15007083 15007226 -167408016 - L1MC1 LINE L1 -9 6324 6184 3665 51 0 2 chr6 15007228 15007677 -167407565 - LTR7 LTR ERV1 -2 448 1 2611 74 45 13 chr6 15007677 15008057 -167407185 - HERVH LTR ERV1 0 7713 7322 1427 115 23 9 chr6 15008055 15008272 -167406970 - HERVH LTR ERV1 -1894 5819 5600 * 4493 136 1 1 chr6 15008273 15008935 -167406307 - HERVH LTR ERV1 -2564 5149 4488 3384 116 6 6 chr6 15008937 15009439 -167405803 - HERVH LTR ERV1 -3720 3993 3492 * 20978 80 61 43 chr6 15009429 15012662 -167402580 - HERVH LTR ERV1 -4423 3290 1 3707 40 7 2 chr6 15012662 15013110 -167402132 - LTR7 LTR ERV1 0 450 1 5850 156 21 4 chr6 15013110 15014296 -167400946 - L1MC1 LINE L1 -145 6188 4976 337 194 47 70 chr6 15014280 15014409 -167400833 - L1MC5 LINE L1 -30 7931 7806 * 246 315 139 9 chr6 15014913 15015021 -167400221 - MIR3 SINE MIR -6 202 81 2741 132 29 0 chr6 15018152 15018568 -167396674 + MSTA LTR MaLR 1 428 0 210 254 0 56 chr6 15019076 15019147 -167396095 + L2 LINE L2 3243 3309 -4 209 333 82 22 chr6 15019243 15019426 -167395816 + MIR3 SINE MIR 5 198 -10 356 292 0 8 chr6 15020844 15020964 -167394278 + L2 LINE L2 3193 3311 -2 507 212 62 62 chr6 15022200 15022393 -167392849 - MLT1K LTR MaLR 0 588 396 427 327 22 63 chr6 15022468 15022737 -167392505 - MLT1K LTR MaLR -329 259 2 203 329 12 0 chr6 15024035 15024120 -167391122 - MIR SINE MIR -112 150 65 346 267 69 9 chr6 15024195 15024256 -167390986 - L2 LINE L2 0 3313 3257 441 0 0 0 chr6 15024256 15024305 -167390937 + (TA)n Simple_repeat Simple_repeat 1 49 0 346 267 69 9 chr6 15024305 15024359 -167390883 - L2 LINE L2 -56 3257 3191 1125 104 129 64 chr6 15124680 15124882 -167290360 + AluSg/x SINE Alu 81 295 -15 2512 75 0 0 chr6 15124937 15125243 -167289999 + AluY SINE Alu 1 306 -5 1931 133 0 68 chr6 15125419 15125743 -167289499 + AluSx SINE Alu 1 302 -10 276 250 135 7 chr6 15125873 15126012 -167289230 - L1ME LINE L1 -523 5641 5486 195 231 0 19 chr6 15126474 15126526 -167288716 + MIR SINE MIR 211 261 -1 2217 124 0 0 chr6 15127262 15127561 -167287681 - AluSx SINE Alu -13 299 1 330 296 122 57 chr6 15128472 15128557 -167286685 - L1ME LINE L1 -471 5699 5621 387 0 0 0 chr6 15128557 15128600 -167286642 + (TG)n Simple_repeat Simple_repeat 2 44 0 1634 161 44 18 chr6 15128600 15128874 -167286368 - AluSx SINE Alu -28 284 4 330 296 122 57 chr6 15128874 15129155 -167286087 - L1ME LINE L1 -548 5622 5290 317 149 35 11 chr6 15129165 15129252 -167285990 + CT-rich Low_complexity Low_complexity 2 90 0 2180 81 15 0 chr6 15129263 15129535 -167285707 - AluSp SINE Alu -37 276 1 2551 65 0 0 chr6 15129606 15129912 -167285330 - AluY SINE Alu -5 306 1 2274 93 0 7 chr6 15129976 15130276 -167284966 - AluY SINE Alu -13 298 1 324 264 83 67 chr6 15130285 15130340 -167284902 - L1ME LINE L1 -896 5250 5197 2399 89 0 7 chr6 15130340 15130643 -167284599 - AluY SINE Alu -10 301 1 324 264 83 67 chr6 15130643 15130780 -167284462 - L1ME LINE L1 -949 5197 5055 2071 91 87 0 chr6 15131148 15131423 -167283819 - AluSq SINE Alu -14 299 1 2352 82 0 44 chr6 15131743 15132061 -167283181 - AluSq SINE Alu -9 304 1 320 149 45 0 chr6 15132678 15132745 -167282497 - AluS SINE Alu 0 302 233 2229 114 3 0 chr6 15132889 15133186 -167282056 - AluSg SINE Alu -12 298 1 834 58 0 0 chr6 15133215 15133318 -167281924 + AluY SINE Alu 1 103 -208 2016 58 0 8 chr6 15133418 15133661 -167281581 + AluY SINE Alu 54 294 -17 1163 87 5 65 chr6 15133742 15133954 -167281288 + AluSp SINE Alu 123 323 0 1232 251 72 19 chr6 15134011 15134425 -167280817 - Charlie4a DNA MER1_type -34 474 39 255 271 65 19 chr6 15134669 15134776 -167280466 + L2 LINE L2 3155 3266 -6 1860 180 79 27 chr6 15134893 15135298 -167279944 - MSTA LTR MaLR -2 426 1 869 96 26 0 chr6 15136199 15136314 -167278928 - FLAM_C SINE Alu -25 118 1 2018 127 38 0 chr6 15136358 15136649 -167278593 + AluSx SINE Alu 1 302 -10 477 220 232 6 chr6 15136789 15136957 -167278285 - L1ME2 LINE L1 -9 6155 5950 1343 205 128 0 chr6 15136968 15137319 -167277923 - L1ME2 LINE L1 -289 5875 5480 2191 92 0 7 chr6 15137421 15137703 -167277539 - AluY SINE Alu -31 280 1 1541 182 7 18 chr6 15137755 15138030 -167277212 + AluJo SINE Alu 24 295 -17 2340 48 21 17 chr6 15138814 15139103 -167276139 - AluY SINE Alu -21 290 1 328 301 0 0 chr6 15139230 15139333 -167275909 - L1ME LINE L1 -460 5661 5559 1432 207 7 20 chr6 15139454 15139754 -167275488 - AluSx SINE Alu -16 296 1 1107 138 0 18 chr6 15140047 15140214 -167275028 + AluY SINE Alu 132 295 -16 2152 97 3 17 chr6 15140975 15141265 -167273977 - AluSc SINE Alu -15 294 9 2594 65 0 0 chr6 15141894 15142202 -167273040 - AluY SINE Alu 0 311 4 1946 143 4 0 chr6 15142442 15142744 -167272498 - AluSg SINE Alu 0 304 2 567 194 21 35 chr6 15143324 15143468 -167271774 - L1MC4 LINE L1 -115 7927 7786 458 244 8 0 chr6 15143482 15143601 -167271641 - L1MC4 LINE L1 -1073 6969 6850 24 0 0 0 chr6 15143922 15143946 -167271296 + AT_rich Low_complexity Low_complexity 1 24 0 1980 95 51 4 chr6 15143946 15144219 -167271023 - AluSg1 SINE Alu -23 286 1 836 151 0 8 chr6 15144300 15144426 -167270816 - FLAM_C SINE Alu -18 125 1 2273 98 20 0 chr6 15145190 15145485 -167269757 + AluSx SINE Alu 4 304 -8 432 0 0 0 chr6 15147467 15147515 -167267727 + (TG)n Simple_repeat Simple_repeat 1 48 0 210 37 0 0 chr6 15147514 15147541 -167267701 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 2317 92 3 0 chr6 15148917 15149211 -167266031 + AluSx SINE Alu 1 295 -17 2077 110 41 3 chr6 15149515 15149807 -167265435 - AluSx SINE Alu -9 303 1 346 256 171 23 chr6 15150035 15150164 -167265078 - MER5A DNA MER1_type -8 181 34 539 237 79 13 chr6 15150757 15150909 -167264333 + MIR SINE MIR 79 240 -22 2525 67 3 13 chr6 15153108 15153420 -167261822 - AluSq SINE Alu -4 309 1 189 58 29 72 chr6 15153654 15153723 -167261519 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1997 128 3 10 chr6 15153742 15154038 -167261204 + AluSg SINE Alu 1 294 -16 1422 144 53 4 chr6 15154045 15154288 -167260954 - AluSq SINE Alu -45 268 14 294 201 206 49 chr6 15156405 15156589 -167258653 + L1ME4a LINE L1 5754 5966 -155 220 286 0 0 chr6 15156589 15156638 -167258604 + (TATG)n Simple_repeat Simple_repeat 1 49 0 197 247 165 21 chr6 15156925 15157022 -167258220 - L2 LINE L2 -467 2847 2737 2367 88 3 3 chr6 15158232 15158537 -167256705 + AluSp SINE Alu 1 305 -8 2178 99 0 0 chr6 15159005 15159288 -167255954 - AluSg1 SINE Alu -26 283 1 280 232 106 53 chr6 15159298 15159317 -167255925 - L1MA10 LINE L1 -2 6332 6314 780 231 169 13 chr6 15159317 15159624 -167255618 - L1ME2 LINE L1 -9 6155 5801 180 289 60 48 chr6 15161024 15161107 -167254135 - MIR SINE MIR -145 117 34 289 211 80 164 chr6 15161179 15161392 -167253850 + L2 LINE L2 3119 3313 0 779 131 0 0 chr6 15161854 15161961 -167253281 + U6 snRNA snRNA 1 107 0 1390 126 190 16 chr6 15163062 15163309 -167251933 - AluSx SINE Alu -22 290 1 1549 128 124 8 chr6 15163479 15163736 -167251506 - AluSg1 SINE Alu -22 287 1 647 185 123 19 chr6 15163778 15163940 -167251302 + MIR SINE MIR 15 193 -69 1016 129 0 7 chr6 15165003 15165158 -167250084 + AluSq SINE Alu 142 295 -18 1459 152 72 45 chr6 15166329 15166619 -167248623 - AluSx SINE Alu -14 298 1 351 0 0 0 chr6 15167789 15167828 -167247414 + (TG)n Simple_repeat Simple_repeat 2 40 0 2137 104 23 3 chr6 15168728 15169027 -167246215 - AluSg SINE Alu -5 305 1 235 189 0 0 chr6 15169256 15169293 -167245949 + Alu SINE Alu 137 173 -129 263 233 163 39 chr6 15169403 15169532 -167245710 + MIR SINE MIR 71 215 -47 478 186 0 0 chr6 15170466 15170552 -167244690 - MLT1B LTR MaLR -304 86 1 1477 142 142 0 chr6 15170590 15170843 -167244399 + AluSg SINE Alu 5 293 -17 2482 61 10 13 chr6 15170843 15171153 -167244089 + AluY SINE Alu 1 309 -2 330 262 148 0 chr6 15171161 15171283 -167243959 - L1M4 LINE L1 -984 5162 5023 598 184 39 0 chr6 15171312 15171415 -167243827 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 15171435 15171728 -167243514 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 15172621 15173054 -167242188 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 15173066 15173162 -167242080 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 15173187 15173433 -167241809 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 15173447 15173742 -167241500 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 15174186 15174266 -167240976 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 15174471 15174522 -167240720 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 15175245 15175325 -167239917 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 15175354 15175485 -167239757 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 15177999 15178307 -167236935 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 15178413 15178518 -167236724 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 15178526 15178770 -167236472 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 15178781 15178868 -167236374 + Tigger7 DNA MER2_type 9 112 -2375 1491 158 62 121 chr6 15179802 15179873 -167235369 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 15179873 15180173 -167235069 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 15180173 15180499 -167234743 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 15180499 15180632 -167234610 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 15180632 15180688 -167234554 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 15182029 15182342 -167232900 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 15182758 15183022 -167232220 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 15183028 15183076 -167232166 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 15183650 15183781 -167231461 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 15183956 15183994 -167231248 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 15184108 15186481 -167228761 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 15186481 15186777 -167228465 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 15186777 15186907 -167228335 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 15186908 15187082 -167228160 - AluSg/x SINE Alu -18 294 121 199 192 0 25 chr6 15187216 15187262 -167227980 - MIR SINE MIR -63 145 105 1962 111 12 71 chr6 15189868 15190193 -167225049 + AluSq SINE Alu 1 306 -7 243 0 0 0 chr6 15191047 15191074 -167224168 + (T)n Simple_repeat Simple_repeat 1 27 0 324 182 83 58 chr6 15191420 15191541 -167223701 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 15191781 15191802 -167223440 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 15192518 15192551 -167222691 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 15192823 15192884 -167222358 + MIR SINE MIR 43 102 -160 2064 124 7 0 chr6 15193683 15193973 -167221269 - AluSg SINE Alu -14 296 5 1170 163 54 128 chr6 15194670 15194983 -167220259 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 15194998 15195027 -167220215 + AT_rich Low_complexity Low_complexity 1 30 -26 2269 108 0 0 chr6 15195027 15195333 -167219909 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 15195333 15195360 -167219882 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 15195409 15195434 -167219808 + AT_rich Low_complexity Low_complexity 1 25 0 825 276 112 43 chr6 15197505 15197951 -167217291 + HsTC2 DNA Tc2 105 581 -1317 258 219 173 26 chr6 15198375 15198489 -167216753 + MIR SINE MIR 20 150 -58 1887 198 52 20 chr6 15199820 15200279 -167214963 - L1MB8 LINE L1 -344 5834 5361 1502 204 96 18 chr6 15201015 15201411 -167213831 + MLT1D LTR MaLR 79 505 0 238 181 179 14 chr6 15201542 15201629 -167213613 - MIR SINE MIR -71 137 38 183 100 50 50 chr6 15201807 15201847 -167213395 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 15202158 15202178 -167213064 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1583 202 84 46 chr6 15202469 15202562 -167212680 - L1MB5 LINE L1 -17 6157 6069 1951 147 3 0 chr6 15202562 15202855 -167212387 - AluSx SINE Alu -18 294 1 1583 202 84 46 chr6 15202855 15203290 -167211952 - L1MB5 LINE L1 -105 6069 5577 942 253 169 27 chr6 15202877 15203402 -167211840 - L1MC4 LINE L1 -1993 6049 5450 * 2113 133 10 0 chr6 15203677 15203985 -167211257 + AluSx SINE Alu 1 311 -1 1615 166 95 0 chr6 15206648 15206931 -167208311 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 15207085 15207137 -167208105 + AT_rich Low_complexity Low_complexity 1 52 0 1958 124 14 21 chr6 15207137 15207427 -167207815 - AluSg SINE Alu -22 288 1 1363 197 3 72 chr6 15207429 15207749 -167207493 - AluJo SINE Alu -14 298 1 559 274 181 0 chr6 15208049 15208341 -167206901 + L2 LINE L2 2429 2773 -541 1748 156 44 3 chr6 15208837 15209132 -167206110 - AluSx SINE Alu -5 307 1 271 192 19 0 chr6 15210212 15210264 -167204978 + MER5A DNA MER1_type 1 53 -136 183 250 0 0 chr6 15210293 15210341 -167204901 + MER5A DNA MER1_type 132 179 -10 743 224 87 20 chr6 15211716 15211912 -167203330 + MER3 DNA MER1_type 1 209 0 404 221 147 32 chr6 15213664 15213854 -167201388 - MER5C DNA MER1_type -36 288 77 198 0 0 0 chr6 15217926 15217948 -167197294 + (A)n Simple_repeat Simple_repeat 1 22 0 1756 83 46 12 chr6 15220645 15220918 -167194324 + AluSq SINE Alu 44 313 0 2129 123 0 10 chr6 15223635 15223937 -167191305 - AluSx SINE Alu -13 299 1 881 74 0 0 chr6 15224863 15224971 -167190271 - AluSc SINE Alu -12 297 190 313 218 20 59 chr6 15225019 15225120 -167190122 + MER34 LTR ERV1 432 528 -14 3732 134 96 23 chr6 15226026 15226758 -167188484 + LTR1 LTR ERV1 1 785 0 28 0 0 0 chr6 15226946 15226974 -167188268 + AT_rich Low_complexity Low_complexity 1 28 0 258 364 130 5 chr6 15227294 15227478 -167187764 + L1MEd LINE L1 457 663 -5456 27 0 0 0 chr6 15228517 15228544 -167186698 + AT_rich Low_complexity Low_complexity 1 27 0 450 0 0 0 chr6 15228712 15228762 -167186480 + (CA)n Simple_repeat Simple_repeat 2 51 0 369 0 0 0 chr6 15229232 15229273 -167185969 + (CA)n Simple_repeat Simple_repeat 2 42 0 967 212 0 11 chr6 15229592 15229781 -167185461 + MER5A DNA MER1_type 3 189 0 457 101 157 22 chr6 15229921 15230010 -167185232 + MER51A LTR ERV1 5 105 -529 1307 83 47 156 chr6 15230066 15230202 -167185040 + MER51A LTR ERV1 389 538 -96 291 28 0 0 chr6 15230202 15230238 -167185004 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 15230238 15230260 -167184982 + MER51A LTR ERV1 538 561 -73 1775 155 14 4 chr6 15230260 15230537 -167184705 - AluSx SINE Alu -32 280 1 1307 83 47 156 chr6 15230537 15230653 -167184589 + MER51A LTR ERV1 561 634 0 1572 184 7 32 chr6 15233119 15233429 -167181813 + AluJo SINE Alu 5 306 -6 2146 134 0 0 chr6 15233753 15234059 -167181183 - AluSx SINE Alu -5 307 2 2669 49 0 6 chr6 15234080 15234407 -167180835 + L1PA5 LINE L1 5822 6146 -8 1179 205 151 29 chr6 15236904 15237255 -167177987 - MSTD LTR MaLR -2 394 1 394 252 0 66 chr6 15237635 15237786 -167177456 + MIR SINE MIR 112 252 -10 2198 98 0 3 chr6 15237793 15238108 -167177134 - AluSp SINE Alu 0 314 1 822 165 0 0 chr6 15238416 15238549 -167176693 + FLAM_C SINE Alu 1 133 0 1725 167 10 19 chr6 15239386 15239698 -167175544 + AluJb SINE Alu 1 309 -3 2177 282 167 27 chr6 15241356 15242267 -167172975 + L1MEc LINE L1 11 793 -5603 2232 83 11 0 chr6 15242267 15242544 -167172698 - AluSg SINE Alu -13 297 18 2177 282 167 27 chr6 15242544 15243059 -167172183 + L1MEc LINE L1 793 1637 -4759 303 207 117 69 chr6 15243081 15243226 -167172016 + L1MEc LINE L1 1599 1750 -4646 2069 94 20 10 chr6 15244169 15244467 -167170775 + AluSc SINE Alu 1 301 -8 1577 186 7 20 chr6 15244933 15245228 -167170014 - AluJb SINE Alu -21 291 1 350 260 29 0 chr6 15245252 15245356 -167169886 - MIR SINE MIR -65 197 91 5919 62 22 66 chr6 15245941 15246847 -167168395 + SVA Other Other 1 866 -520 6343 78 9 60 chr6 15247039 15248047 -167167195 + SVA Other Other 430 1385 -1 21 82 0 0 chr6 15248048 15248097 -167167145 + AT_rich Low_complexity Low_complexity 1 49 0 970 142 13 7 chr6 15248919 15249074 -167166168 + MSTD LTR MaLR 4 159 -237 810 196 5 73 chr6 15249074 15249278 -167165964 + AluJo SINE Alu 123 312 0 698 236 46 6 chr6 15249288 15249462 -167165780 + MSTD LTR MaLR 216 396 0 2294 89 23 0 chr6 15249550 15249853 -167165389 + AluSp SINE Alu 2 311 -2 1844 152 22 4 chr6 15250260 15250536 -167164706 + AluSx SINE Alu 2 282 -30 285 344 39 0 chr6 15252318 15252446 -167162796 + Charlie8 DNA MER1_type 77 209 -2208 226 253 61 30 chr6 15253020 15253119 -167162123 + MARNA DNA Mariner 157 258 -328 592 233 196 19 chr6 15254066 15254337 -167160905 + MER33 DNA MER1_type 5 323 -1 1839 157 42 0 chr6 15254592 15254879 -167160363 - AluJo SINE Alu -13 299 1 181 242 227 0 chr6 15254964 15255030 -167160212 - L2 LINE L2 -4 3268 3188 228 186 0 66 chr6 15255470 15255573 -167159669 - MER5A DNA MER1_type -1 188 20 1333 174 32 36 chr6 15255602 15255883 -167159359 - AluJo SINE Alu -32 280 1 2138 114 0 0 chr6 15256426 15256707 -167158535 - AluSc SINE Alu -28 281 1 486 0 0 0 chr6 15258287 15258341 -167156901 + (TG)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chr6 15260940 15260962 -167154280 + (A)n Simple_repeat Simple_repeat 1 22 0 226 239 0 0 chr6 15261930 15261976 -167153266 + GA-rich Low_complexity Low_complexity 2 47 0 223 237 34 0 chr6 15263141 15263200 -167152042 - MIR SINE MIR -45 217 157 204 214 0 0 chr6 15263320 15263376 -167151866 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 292 303 10 10 chr6 15263447 15263546 -167151696 - MIR3 SINE MIR -34 174 76 428 273 48 94 chr6 15264805 15265179 -167150063 - L1ME3A LINE L1 -282 5888 5532 828 213 63 6 chr6 15266059 15266233 -167149009 + Tigger7 DNA MER2_type 3 186 -2301 616 184 0 9 chr6 15266248 15266362 -167148880 + Tigger7 DNA MER2_type 2379 2491 0 21 0 0 0 chr6 15266373 15266394 -167148848 + AT_rich Low_complexity Low_complexity 1 21 0 218 233 0 0 chr6 15266490 15266533 -167148709 + MIR SINE MIR 116 158 -104 1797 124 4 4 chr6 15266908 15267166 -167148076 + AluSc SINE Alu 9 266 -43 979 109 0 0 chr6 15267167 15267295 -167147947 + AluSp SINE Alu 5 132 -181 1550 124 120 8 chr6 15267298 15267548 -167147694 + AluY SINE Alu 1 278 -33 229 286 48 0 chr6 15267649 15267712 -167147530 + L1ME LINE L1 5519 5584 -537 183 286 117 0 chr6 15268073 15268150 -167147092 + L2 LINE L2 2924 3009 -263 1316 186 68 21 chr6 15268250 15268530 -167146712 - AluJb SINE Alu -16 296 4 259 194 56 14 chr6 15269110 15269182 -167146060 - L1ME4a LINE L1 -83 6038 5964 631 241 31 42 chr6 15269809 15269878 -167145364 - MER3 DNA MER1_type -16 193 125 2111 122 3 10 chr6 15269878 15270182 -167145060 + AluSq SINE Alu 1 302 -11 631 241 31 42 chr6 15270182 15270303 -167144939 - MER3 DNA MER1_type -84 125 5 764 285 29 21 chr6 15270927 15271169 -167144073 + MIR SINE MIR 15 258 -4 214 309 116 44 chr6 15271247 15271428 -167143814 + L2 LINE L2 3120 3313 0 203 337 131 34 chr6 15271552 15271727 -167143515 - L3b LINE CR1 -141 1442 1251 183 42 0 0 chr6 15273048 15273072 -167142170 + (CAT)n Simple_repeat Simple_repeat 1 24 0 397 127 25 13 chr6 15274510 15274589 -167140653 + GA-rich Low_complexity Low_complexity 2 81 0 588 122 0 0 chr6 15274603 15274685 -167140557 + AluS SINE Alu 5 86 -226 180 0 0 0 chr6 15274685 15274705 -167140537 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 678 168 0 26 chr6 15277420 15277533 -167137709 - AluY SINE Alu -16 295 186 213 333 30 0 chr6 15278198 15278297 -167136945 - L3 LINE CR1 -166 1411 1310 297 289 24 12 chr6 15279577 15279660 -167135582 + L3 LINE CR1 1127 1210 -367 334 261 231 0 chr6 15279868 15280002 -167135240 - MER5A DNA MER1_type 0 189 25 369 200 60 10 chr6 15281119 15281219 -167134023 - L2 LINE L2 -4 3268 3164 2278 61 16 39 chr6 15281332 15281642 -167133600 - AluY SINE Alu -8 303 1 1949 114 21 11 chr6 15283374 15283655 -167131587 - AluSg SINE Alu -26 284 1 2097 136 3 0 chr6 15283699 15284008 -167131234 - AluSg SINE Alu 0 310 1 1724 164 0 27 chr6 15287440 15287732 -167127510 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 15287948 15288017 -167127225 + (TG)n Simple_repeat Simple_repeat 1 70 0 2351 89 123 0 chr6 15288147 15288463 -167126779 - THE1A LTR MaLR 0 355 1 939 132 0 0 chr6 15288501 15288630 -167126612 - AluSg SINE Alu -46 266 138 264 132 0 118 chr6 15288630 15288698 -167126544 + AluJo SINE Alu 94 153 -149 843 132 0 0 chr6 15288702 15288823 -167126419 - AluSg SINE Alu -179 131 11 2164 109 3 13 chr6 15288876 15289188 -167126054 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 15289191 15289216 -167126026 + AT_rich Low_complexity Low_complexity 1 25 0 260 295 9 86 chr6 15289556 15289661 -167125581 - MIR SINE MIR -95 113 17 479 238 186 26 chr6 15290674 15290867 -167124375 - MIR SINE MIR -18 244 21 1994 120 3 14 chr6 15291053 15291336 -167123906 - AluSx SINE Alu -32 280 1 193 54 0 54 chr6 15292012 15292049 -167123193 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2203 48 62 24 chr6 15292073 15292365 -167122877 + AluY SINE Alu 1 303 -8 440 179 123 49 chr6 15292797 15292959 -167122283 - MER104 DNA Tc2 0 180 7 1920 112 76 0 chr6 15293003 15293280 -167121962 + AluSg SINE Alu 1 298 -12 277 266 11 32 chr6 15293557 15293651 -167121591 - MIR3 SINE MIR -7 201 110 717 217 16 0 chr6 15294170 15294299 -167120943 - FLAM_A SINE Alu -1 132 2 420 294 122 42 chr6 15294378 15294762 -167120480 + L2 LINE L2 1576 1990 -1324 2214 104 13 0 chr6 15294797 15295095 -167120147 - AluSp SINE Alu -11 302 1 1168 186 53 0 chr6 15295097 15295323 -167119919 - AluJo SINE Alu -9 303 66 289 259 43 86 chr6 15295392 15295554 -167119688 + L2 LINE L2 2323 2477 -837 1022 181 111 48 chr6 15295593 15295863 -167119379 - AluJb SINE Alu -14 298 12 348 343 97 23 chr6 15295916 15296426 -167118816 + L2 LINE L2 2562 3149 -164 36 70 0 0 chr6 15296466 15296537 -167118705 + AT_rich Low_complexity Low_complexity 1 71 0 202 291 55 36 chr6 15296538 15296648 -167118594 + L2 LINE L2 3148 3259 -54 317 319 0 14 chr6 15297138 15297252 -167117990 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 15297252 15297301 -167117941 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 15297306 15297333 -167117909 + (TG)n Simple_repeat Simple_repeat 2 28 0 328 202 123 97 chr6 15297488 15297623 -167117619 - FLAM_C SINE Alu 0 138 1 690 222 247 45 chr6 15298301 15298593 -167116649 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 15299574 15299659 -167115583 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 834 177 39 28 chr6 15300195 15300376 -167114866 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 15303041 15303085 -167112157 + (TG)n Simple_repeat Simple_repeat 2 45 0 4466 166 23 6 chr6 15303388 15304264 -167110978 + L1MA8 LINE L1 5400 6290 -1 352 277 81 20 chr6 15304362 15304510 -167110732 - MIR SINE MIR -51 211 55 30 0 0 0 chr6 15304642 15304672 -167110570 + AT_rich Low_complexity Low_complexity 1 30 0 1256 267 112 57 chr6 15304697 15305367 -167109875 - HAL1 LINE L1 -1260 1247 486 936 173 12 0 chr6 15305367 15305529 -167109713 - U1 snRNA snRNA 0 165 2 1256 267 112 57 chr6 15305529 15306010 -167109232 - HAL1 LINE L1 -2021 486 33 793 150 0 58 chr6 15306526 15306699 -167108543 + pTR5 LTR ERV1 743 905 -1533 232 271 18 22 chr6 15307096 15307285 -167107957 - L1M2 LINE L1 -857 5443 5254 3383 168 84 27 chr6 15307341 15307405 -167107837 - L1MC3 LINE L1 -1 7784 7725 2003 183 19 6 chr6 15307405 15307765 -167107477 + MLT1A1 LTR MaLR 1 365 0 3383 168 84 27 chr6 15307765 15308520 -167106722 - L1MC3 LINE L1 -60 7725 6918 478 329 118 18 chr6 15308599 15309092 -167106150 - L1M4 LINE L1 -1022 5124 4583 430 192 34 20 chr6 15309093 15309239 -167106003 + CT-rich Low_complexity Low_complexity 3 150 0 405 307 173 41 chr6 15309256 15309650 -167105592 - L1M4 LINE L1 -1587 4559 4114 1728 200 36 53 chr6 15309651 15310256 -167104986 - L1M4 LINE L1 -3269 2877 2283 433 365 50 41 chr6 15310685 15310897 -167104345 + L1MEd LINE L1 590 807 -5398 225 0 0 0 chr6 15310897 15310922 -167104320 + (CA)n Simple_repeat Simple_repeat 2 26 0 433 365 50 41 chr6 15310922 15311027 -167104215 + L1MEd LINE L1 807 910 -5295 1060 337 15 15 chr6 15311031 15311426 -167103816 - LTR16C LTR ERVL -8 483 89 39 0 0 0 chr6 15311528 15311567 -167103675 + AT_rich Low_complexity Low_complexity 1 39 0 257 254 101 42 chr6 15311672 15311889 -167103353 + L1MEd LINE L1 1463 1692 -4704 566 247 24 0 chr6 15312045 15312215 -167103027 - L1MC2 LINE L1 -3 6341 6168 205 224 0 26 chr6 15312220 15312296 -167102946 + (CATA)n Simple_repeat Simple_repeat 4 77 0 421 249 93 44 chr6 15312485 15312690 -167102552 + LTR33 LTR ERVL 1 215 -306 247 278 22 11 chr6 15312767 15312857 -167102385 + LTR33 LTR ERVL 327 417 -104 2275 77 14 0 chr6 15312908 15313195 -167102047 - AluY SINE Alu -20 291 1 1987 267 76 28 chr6 15313196 15314309 -167100933 - L1M4 LINE L1 -1407 4739 3573 909 285 155 44 chr6 15314630 15315152 -167100090 + L2 LINE L2 2738 3297 -16 253 244 0 7 chr6 15315228 15315320 -167099922 - L1ME LINE L1 -338 5826 5738 252 265 51 0 chr6 15315321 15315419 -167099823 - Charlie2a DNA MER1_type -44 2818 2716 803 166 44 0 chr6 15315424 15315605 -167099637 - Charlie2a DNA MER1_type -1196 1666 1478 225 264 55 0 chr6 15315707 15315798 -167099444 - Charlie2b DNA MER1_type -2127 655 560 2429 59 7 16 chr6 15315798 15316105 -167099137 - AluY SINE Alu -7 304 1 958 205 84 16 chr6 15316453 15316702 -167098540 + MLT1A1 LTR MaLR 100 365 0 384 317 70 7 chr6 15317096 15317238 -167098004 - LTR33 LTR ERVL -123 398 248 24 32 0 0 chr6 15317273 15317304 -167097938 + AT_rich Low_complexity Low_complexity 1 31 0 1340 308 78 68 chr6 15317551 15317799 -167097443 + L2 LINE L2 2219 2463 -850 2213 122 20 0 chr6 15317799 15318102 -167097140 - AluSx SINE Alu -3 309 1 1340 308 78 68 chr6 15318102 15318917 -167096325 + L2 LINE L2 2463 3313 0 249 247 104 26 chr6 15419458 15419535 -166995707 - MIR SINE MIR -94 114 32 2345 184 37 0 chr6 15420298 15420701 -166994541 - MER47B DNA MER2_type 0 418 1 229 355 0 0 chr6 15421371 15421447 -166993795 + L2 LINE L2 3186 3261 -11 190 308 62 77 chr6 15422661 15422791 -166992451 - L2 LINE L2 -10 3303 3176 2294 97 0 55 chr6 15423249 15423579 -166991663 - AluSx SINE Alu 0 312 1 303 259 155 17 chr6 15424665 15424781 -166990461 - L2 LINE L2 -3 3269 3138 2466 183 67 30 chr6 15425026 15425562 -166989680 + MER74A LTR ERVL 3 558 0 380 300 142 2 chr6 15427038 15427200 -166988042 - MIR SINE MIR -51 211 32 329 309 144 27 chr6 15427342 15427640 -166987602 + L1MC2 LINE L1 5265 5597 -567 1929 115 0 87 chr6 15427644 15427965 -166987277 - AluSx SINE Alu -19 293 1 424 287 39 17 chr6 15428287 15428468 -166986774 + LTR16A LTR ERVL 164 348 -102 332 239 45 60 chr6 15428534 15428668 -166986574 + Charlie7 DNA MER1_type 2478 2609 -3 2111 165 105 37 chr6 15428673 15429110 -166986132 + MLT1C LTR MaLR 1 467 0 262 290 110 25 chr6 15429129 15429329 -166985913 + L1MC2 LINE L1 5679 5895 -1913 2154 131 0 0 chr6 15429542 15429839 -166985403 + AluSg SINE Alu 1 297 -13 38 0 0 0 chr6 15429885 15429923 -166985319 + AT_rich Low_complexity Low_complexity 1 38 0 378 157 14 0 chr6 15429941 15430011 -166985231 + L1MC3 LINE L1 7524 7594 -191 976 161 75 5 chr6 15430011 15430197 -166985045 + L1MC2 LINE L1 6137 6335 -9 365 285 0 31 chr6 15430205 15430329 -166984913 - MER5A DNA MER1_type -32 146 30 285 316 114 0 chr6 15430969 15431083 -166984159 - L2 LINE L2 0 3313 3187 256 263 0 18 chr6 15432219 15432276 -166982966 - MER91A DNA MER1_type 0 196 141 243 247 82 48 chr6 15432835 15432989 -166982253 - MIR SINE MIR -62 146 27 365 309 107 37 chr6 15433262 15433505 -166981737 - MIR SINE MIR 0 262 3 386 261 115 32 chr6 15433621 15433778 -166981464 - MER112 DNA MER1_type -90 170 1 1491 223 14 28 chr6 15434589 15435001 -166980241 - MLT1A2 LTR MaLR -4 370 1 908 203 51 99 chr6 15436895 15437235 -166978007 - MLT1C LTR MaLR -1 466 168 2002 195 22 6 chr6 15437343 15437702 -166977540 - MLT1A1 LTR MaLR 0 365 1 473 213 15 66 chr6 15437988 15438124 -166977118 + MIR3 SINE MIR 15 143 -65 526 324 45 33 chr6 15439031 15439275 -166975967 - MIR SINE MIR -11 251 5 242 272 62 12 chr6 15439382 15439463 -166975779 - L2 LINE L2 -4 3268 3184 300 326 153 0 chr6 15439659 15439803 -166975439 + MIR3 SINE MIR 30 195 -13 204 40 0 0 chr6 15440307 15440332 -166974910 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 332 317 60 33 chr6 15440399 15440582 -166974660 - MIR SINE MIR -43 219 32 417 311 85 34 chr6 15440726 15440903 -166974339 - MER91A DNA MER1_type -3 193 8 7721 48 7 0 chr6 15441515 15442885 -166972357 - L1PA6 LINE L1 0 6154 4780 376 303 112 0 chr6 15442948 15443100 -166972142 - MIR SINE MIR -60 202 34 3165 164 6 8 chr6 15443209 15443733 -166971509 - LTR26B LTR ERV1 -8 523 1 201 224 0 0 chr6 15444487 15444545 -166970697 + CT-rich Low_complexity Low_complexity 1 58 0 1053 148 40 139 chr6 15444756 15445059 -166970183 + MER34B LTR ERV1 1 273 -292 1782 163 24 84 chr6 15445063 15445432 -166969810 + Tigger3(Golem) DNA MER2_type 2 3028 -1 1634 135 28 11 chr6 15445432 15445714 -166969528 + MER34B LTR ERV1 275 561 -4 280 321 155 0 chr6 15446974 15447161 -166968081 + MIR SINE MIR 47 262 0 293 342 154 7 chr6 15447173 15447322 -166967920 + L2 LINE L2 3102 3272 0 3179 149 25 39 chr6 15448299 15448716 -166966526 - MER34C LTR ERV1 -3 582 174 1614 171 12 50 chr6 15448716 15449037 -166966205 - AluJo SINE Alu -3 309 1 3179 149 25 39 chr6 15449037 15449209 -166966033 - MER34C LTR ERV1 -411 174 1 334 252 142 13 chr6 15449565 15449720 -166965522 + MIR SINE MIR 23 197 -65 1607 190 71 54 chr6 15449871 15450423 -166964819 + MER39 LTR ERV1 1 707 0 286 333 26 8 chr6 15450550 15450667 -166964575 + LTR67 LTR ERVL 432 550 -7 1404 203 61 75 chr6 15450675 15451198 -166964044 - MER39 LTR ERV1 -3 704 1 1819 153 134 0 chr6 15451352 15451659 -166963583 - MER7A DNA MER2_type 0 346 1 698 251 34 22 chr6 15452139 15452253 -166962989 + MER5A DNA MER1_type 9 127 -62 959 122 0 0 chr6 15452253 15452384 -166962858 + FLAM_C SINE Alu 2 132 -1 698 251 34 22 chr6 15452384 15452448 -166962794 + MER5A DNA MER1_type 127 189 0 183 283 50 0 chr6 15453492 15453552 -166961690 - L3 LINE CR1 -888 689 627 4362 165 45 3 chr6 15454281 15455021 -166960221 - LTR39 LTR ERV1 -12 771 1 2418 169 61 33 chr6 15455405 15455927 -166959315 - MER34C LTR ERV1 -2 583 47 1918 107 0 30 chr6 15455998 15456261 -166958981 + AluSx SINE Alu 1 255 -57 422 176 44 14 chr6 15456281 15456447 -166958795 + LTR29 LTR ERV1 1 198 -424 1434 132 128 15 chr6 15456490 15456755 -166958487 + LTR29 LTR ERV1 305 599 -23 284 357 102 39 chr6 15457155 15457460 -166957782 - L2 LINE L2 -4 3268 2945 450 305 6 58 chr6 15457855 15458029 -166957213 - L2 LINE L2 -607 2707 2543 238 293 70 32 chr6 15458117 15458262 -166956980 + MIR3 SINE MIR 15 164 -62 282 301 78 10 chr6 15458659 15458762 -166956480 + MIR3 SINE MIR 71 180 -28 593 251 70 91 chr6 15459436 15459723 -166955519 + LTR16B LTR ERVL 24 304 -160 481 250 17 0 chr6 15459725 15459845 -166955397 + MLT2C1 LTR ERVL 1 122 -275 4411 158 4 4 chr6 15459846 15460555 -166954687 - MER50 LTR ERV1 -23 711 3 1497 177 45 4 chr6 15460559 15460825 -166954417 + MLT2C1 LTR ERVL 121 397 0 2110 107 3 27 chr6 15460829 15461129 -166954113 - AluSp SINE Alu -13 300 8 530 248 7 14 chr6 15461138 15461279 -166953963 + LTR16B LTR ERVL 302 441 -23 223 314 32 48 chr6 15462118 15462242 -166953000 - L2 LINE L2 0 3313 3192 1051 238 42 34 chr6 15462687 15462728 -166952514 - MLT2D LTR ERVL 0 414 375 414 0 0 0 chr6 15462728 15462774 -166952468 + (TG)n Simple_repeat Simple_repeat 1 46 0 252 0 0 0 chr6 15462773 15462801 -166952441 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1051 238 42 34 chr6 15462774 15463024 -166952218 - MLT2D LTR ERVL -39 375 148 1786 181 89 66 chr6 15463041 15463556 -166951686 + MER34C LTR ERV1 51 577 -8 873 84 28 21 chr6 15463562 15463705 -166951537 - MLT2C2 LTR ERVL -314 150 7 1553 168 178 50 chr6 15463981 15464458 -166950784 - MER34C LTR ERV1 -2 583 46 750 292 14 52 chr6 15464486 15464852 -166950390 - L1ME4a LINE L1 -226 5895 5544 24 0 0 0 chr6 15465048 15465072 -166950170 + AT_rich Low_complexity Low_complexity 1 24 0 2119 117 70 6 chr6 15465433 15465775 -166949467 - MER34C LTR ERV1 -185 400 37 207 143 0 0 chr6 15468283 15468318 -166946924 + MIR SINE MIR 195 229 -33 981 56 14 7 chr6 15468683 15468825 -166946417 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 3305 152 18 132 chr6 15469103 15469987 -166945255 - LTR39 LTR ERV1 0 783 1 476 214 141 81 chr6 15471414 15471662 -166943580 - LTR48B LTR ERV1 0 644 382 1174 66 0 7 chr6 15471680 15471831 -166943411 + AluY SINE Alu 158 307 -4 1012 169 159 53 chr6 15471882 15472202 -166943040 - MLT1A1 LTR MaLR -9 356 3 541 245 25 19 chr6 15472215 15472444 -166942798 - MER34 LTR ERV1 -371 273 1 1815 142 73 109 chr6 15472862 15472923 -166942319 - MER31B LTR ERV1 0 466 404 3694 81 28 14 chr6 15472923 15473429 -166941813 - LTR10D LTR ERV1 0 513 1 1815 142 73 109 chr6 15473429 15473846 -166941396 - MER31B LTR ERV1 -62 404 5 2295 89 7 0 chr6 15473846 15474138 -166941104 + AluY SINE Alu 1 294 -17 283 297 31 83 chr6 15474248 15474351 -166940891 - MIR3 SINE MIR -9 199 92 3738 184 49 36 chr6 15474351 15475123 -166940119 + LTR39 LTR ERV1 2 783 0 283 297 31 83 chr6 15475123 15475137 -166940105 - MIR3 SINE MIR -116 92 79 2836 180 12 108 chr6 15475137 15475305 -166939937 - LTR8 LTR ERV1 0 691 508 2301 111 0 6 chr6 15475305 15475620 -166939622 - AluSq SINE Alu 0 313 1 2836 180 12 108 chr6 15475620 15476216 -166939026 - LTR8 LTR ERV1 -183 508 1 283 297 31 83 chr6 15476216 15476289 -166938953 - MIR3 SINE MIR -129 79 18 243 256 128 53 chr6 15477533 15477666 -166937576 + MIR3 SINE MIR 11 153 -55 435 280 48 8 chr6 15478049 15478174 -166937068 + MIR SINE MIR 20 149 -113 1913 180 0 0 chr6 15478234 15478540 -166936702 - AluJo SINE Alu -4 308 3 200 313 83 0 chr6 15478962 15479058 -166936184 + MIR SINE MIR 146 249 -13 242 146 36 36 chr6 15479201 15479256 -166935986 + GA-rich Low_complexity Low_complexity 3 57 0 2249 170 113 18 chr6 15479497 15479762 -166935480 - MER101B LTR ERV1 -33 537 298 303 28 0 0 chr6 15479762 15479798 -166935444 + (TG)n Simple_repeat Simple_repeat 2 37 0 2249 170 113 18 chr6 15479798 15480021 -166935221 - MER101B LTR ERV1 -272 298 3 3060 151 80 16 chr6 15480233 15481001 -166934241 + MER21A LTR ERV1 1 931 0 301 316 79 19 chr6 15481721 15481936 -166933306 - L3b LINE CR1 -225 1358 1131 302 251 16 13 chr6 15482318 15482429 -166932813 + MIR3 SINE MIR 48 160 -48 1048 263 72 12 chr6 15484240 15484559 -166930683 - MER58B DNA MER1_type -3 338 1 209 238 90 82 chr6 15484607 15484729 -166930513 + L2 LINE L2 3150 3272 0 358 350 0 7 chr6 15485385 15485522 -166929720 - L2 LINE L2 0 3272 3137 286 325 58 0 chr6 15486402 15486522 -166928720 + MIR SINE MIR 81 207 -55 207 0 0 0 chr6 15488068 15488091 -166927151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 204 310 39 54 chr6 15488259 15488306 -166926936 - MIR SINE MIR -99 163 117 234 0 0 0 chr6 15488306 15488332 -166926910 + (TTG)n Simple_repeat Simple_repeat 3 28 0 2334 72 0 0 chr6 15488332 15488611 -166926631 - AluY SINE Alu -32 279 1 204 310 39 54 chr6 15488611 15488691 -166926551 - MIR SINE MIR -143 119 37 1728 201 74 22 chr6 15488942 15489386 -166925856 - MLT1C LTR MaLR 0 467 1 231 239 0 0 chr6 15489641 15489687 -166925555 + L2 LINE L2 3141 3186 -86 207 0 0 0 chr6 15489889 15489912 -166925330 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 320 71 0 0 chr6 15490056 15490098 -166925144 - 5S rRNA rRNA -79 42 1 1630 174 46 3 chr6 15490237 15490519 -166924723 - AluJo SINE Alu -14 298 5 260 194 0 82 chr6 15490643 15490741 -166924501 + L1MC4 LINE L1 6614 6703 -1339 218 243 265 33 chr6 15491616 15491797 -166923445 - L2 LINE L2 -72 3241 3019 405 267 110 20 chr6 15491847 15491979 -166923263 - MIR3 SINE MIR -28 180 32 1868 100 97 7 chr6 15491979 15492248 -166922994 + AluSg SINE Alu 1 293 -17 405 267 110 20 chr6 15492248 15492261 -166922981 - MIR3 SINE MIR -176 32 22 200 64 0 106 chr6 15492612 15492659 -166922583 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 208 287 11 32 chr6 15492781 15492875 -166922367 + CT-rich Low_complexity Low_complexity 5 96 0 25 0 0 0 chr6 15493902 15493927 -166921315 + AT_rich Low_complexity Low_complexity 1 25 0 851 135 26 26 chr6 15494902 15495013 -166920229 + MER3 DNA MER1_type 9 119 -43 315 0 0 0 chr6 15495013 15495048 -166920194 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr6 15495047 15495070 -166920172 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 851 135 26 26 chr6 15495048 15495070 -166920172 + MER3 DNA MER1_type 119 140 -22 2538 81 3 0 chr6 15495070 15495380 -166919862 - AluSx SINE Alu -1 311 1 851 135 26 26 chr6 15495380 15495423 -166919819 + MER3 DNA MER1_type 139 164 -45 246 305 19 57 chr6 15495812 15495917 -166919325 + MER5A DNA MER1_type 62 167 -16 198 296 157 0 chr6 15496385 15496493 -166918749 - MIR SINE MIR -73 189 65 2335 231 33 29 chr6 15496760 15497453 -166917789 + L1MC4 LINE L1 7344 8039 -3 579 271 93 13 chr6 15497489 15497725 -166917517 - MIR SINE MIR 0 262 8 309 341 45 23 chr6 15497906 15498038 -166917204 + L2 LINE L2 3138 3272 0 336 294 186 16 chr6 15498048 15498300 -166916942 - L3 LINE CR1 -301 1276 982 2342 243 77 49 chr6 15498344 15499134 -166916108 + HAL1 LINE L1 1 812 -1695 1779 171 96 0 chr6 15499150 15499519 -166915723 - L1MB4 LINE L1 0 6180 5776 207 0 0 0 chr6 15499722 15499745 -166915497 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1699 148 25 14 chr6 15499748 15500026 -166915216 - AluSx SINE Alu -31 281 1 1013 156 6 17 chr6 15500057 15500230 -166915012 + FRAM SINE Alu 1 171 -5 281 263 79 0 chr6 15500638 15500714 -166914528 - L2 LINE L2 -1 3271 3190 1934 143 65 25 chr6 15501420 15501776 -166913466 + THE1C LTR MaLR 6 375 0 239 318 64 18 chr6 15502567 15502677 -166912565 + L2 LINE L2 3158 3272 0 192 276 41 51 chr6 15503200 15503298 -166911944 + L2 LINE L2 3189 3285 -28 1708 179 7 0 chr6 15503320 15503599 -166911643 - AluJb SINE Alu -31 281 1 996 215 106 7 chr6 15503630 15503914 -166911328 - L1M4 LINE L1 -1413 4733 4422 825 219 24 0 chr6 15503958 15504127 -166911115 + MSTD LTR MaLR 1 173 -223 354 310 42 38 chr6 15504135 15504348 -166910894 - L1M4 LINE L1 -1873 4273 4060 528 200 82 0 chr6 15504356 15504491 -166910751 - L1M4 LINE L1 -2157 3989 3844 974 188 0 0 chr6 15504492 15504652 -166910590 - AluSg/x SINE Alu -14 298 139 2886 251 21 20 chr6 15504658 15504890 -166910352 - L1M4 LINE L1 -2303 3843 3613 2145 103 0 7 chr6 15504890 15505215 -166910027 + AluSg SINE Alu 1 323 0 2886 251 21 20 chr6 15505215 15505918 -166909324 - L1M4 LINE L1 -2533 3613 2905 822 229 22 6 chr6 15506237 15506416 -166908826 - MER5A DNA MER1_type -6 183 2 732 194 8 0 chr6 15506982 15507111 -166908131 + FLAM_A SINE Alu 3 132 -1 2229 94 23 10 chr6 15508301 15508609 -166906633 + AluSx SINE Alu 1 312 0 24 0 0 0 chr6 15509679 15509703 -166905539 + AT_rich Low_complexity Low_complexity 1 24 0 3363 157 5 11 chr6 15509704 15510278 -166904964 - L1PB4 LINE L1 -2 6154 5584 360 43 0 0 chr6 15510539 15510585 -166904657 + (CA)n Simple_repeat Simple_repeat 2 47 0 192 125 0 0 chr6 15511310 15511342 -166903900 + (T)n Simple_repeat Simple_repeat 1 32 0 2139 137 0 0 chr6 15511417 15511724 -166903518 + AluSx SINE Alu 1 307 -5 1355 209 43 55 chr6 15513014 15513359 -166901883 + MER58B DNA MER1_type 1 341 0 23 86 0 0 chr6 15513495 15513553 -166901689 + AT_rich Low_complexity Low_complexity 1 58 0 2196 103 20 0 chr6 15513609 15513909 -166901333 + AluSc SINE Alu 1 306 -3 543 289 77 38 chr6 15513921 15514208 -166901034 + L1ME LINE L1 5403 5700 -462 309 258 67 8 chr6 15514220 15514340 -166900902 + MLT1I LTR MaLR 56 182 -227 248 188 188 0 chr6 15514467 15514552 -166900690 + L1M4 LINE L1 2949 3049 -3097 437 132 15 0 chr6 15514571 15514639 -166900603 - LTR16C LTR ERVL -2 489 421 2243 141 17 0 chr6 15514639 15515001 -166900241 - MLT1B LTR MaLR 0 390 23 853 287 42 48 chr6 15515071 15515405 -166899837 - LTR16C LTR ERVL -102 389 58 2380 189 43 15 chr6 15515742 15516275 -166898967 + L1MB5 LINE L1 5627 6174 0 1955 111 0 25 chr6 15516391 15516527 -166898715 + AluSx SINE Alu 1 128 -184 2069 113 20 10 chr6 15516527 15516827 -166898415 + AluSx SINE Alu 1 303 -9 1955 111 0 25 chr6 15516827 15516970 -166898272 + AluSx SINE Alu 128 273 -39 222 37 0 0 chr6 15516970 15516997 -166898245 + (TC)n Simple_repeat Simple_repeat 1 27 0 483 162 67 0 chr6 15518344 15518449 -166896793 - L1MB4 LINE L1 0 6180 6069 30947 169 34 9 chr6 15518469 15518489 -166896753 + ERVL LTR ERVL 13 31 -5733 1754 173 0 37 chr6 15518489 15518813 -166896429 + AluJb SINE Alu 1 312 0 30947 169 34 9 chr6 15518813 15519918 -166895324 + ERVL LTR ERVL 31 1106 -4658 2434 164 31 2 chr6 15519918 15520334 -166894908 + MSTB1 LTR MaLR 1 428 -4 30947 169 34 9 chr6 15520334 15524486 -166890756 + ERVL LTR ERVL 1106 5426 -338 2290 187 118 14 chr6 15524935 15525442 -166889800 - MER90 LTR ERV1 -13 562 3 1754 153 69 53 chr6 15525465 15525844 -166889398 - MLT1B LTR MaLR 0 390 6 180 0 0 0 chr6 15526627 15526647 -166888595 + (T)n Simple_repeat Simple_repeat 1 20 0 312 190 20 10 chr6 15528440 15528540 -166886702 + (TA)n Simple_repeat Simple_repeat 2 102 0 1507 160 100 21 chr6 15528806 15529137 -166886105 + MER46B DNA MER2_type 5 236 0 279 187 67 27 chr6 15529186 15529261 -166885981 + LTR48 LTR ERV1 673 750 -37 1251 176 110 33 chr6 15529902 15530203 -166885039 + MER46C DNA MER2_type 14 337 -1 1228 218 80 33 chr6 15530339 15530798 -166884444 - MER39 LTR ERV1 -6 701 1 502 292 12 6 chr6 15531199 15531367 -166883875 + MER69A DNA AcHobo 9 177 0 358 319 23 24 chr6 15531569 15531711 -166883531 - MIR SINE MIR -60 148 34 2128 161 75 47 chr6 15532272 15532530 -166882712 - MLT1C LTR MaLR -2 465 187 2154 138 0 6 chr6 15532530 15532841 -166882401 - AluSx SINE Alu -3 309 1 2128 161 75 47 chr6 15532841 15533034 -166882208 - MLT1C LTR MaLR -280 187 1 1978 202 33 3 chr6 15533049 15533416 -166881826 - MLT1C-int LTR MaLR -28 1343 966 764 217 0 12 chr6 15533417 15533583 -166881659 - MLT2C2 LTR ERVL -300 164 1 848 215 130 93 chr6 15533900 15534439 -166880803 + MER34B LTR ERV1 3 561 -4 651 152 0 0 chr6 15534551 15534663 -166880579 + (TCTA)n Simple_repeat Simple_repeat 3 114 0 191 330 33 11 chr6 15534678 15534769 -166880473 + L2 LINE L2 3180 3272 0 474 18 0 0 chr6 15534808 15534863 -166880379 + (TA)n Simple_repeat Simple_repeat 1 55 0 309 26 0 0 chr6 15534863 15534901 -166880341 + (TG)n Simple_repeat Simple_repeat 2 39 0 1470 168 80 8 chr6 15534902 15535164 -166880078 - AluJb SINE Alu -25 287 7 188 215 112 65 chr6 15536828 15536935 -166878307 - MIR SINE MIR -62 146 35 1765 161 10 24 chr6 15537694 15537985 -166877257 - AluJo SINE Alu -25 287 1 1533 187 35 74 chr6 15539719 15540125 -166875117 - MLT1B LTR MaLR 0 390 1 232 139 0 0 chr6 15540559 15540595 -166874647 + LTR16A1 LTR ERVL 422 457 0 821 275 4 26 chr6 15542772 15543005 -166872237 + MIR SINE MIR 14 241 -21 225 94 0 0 chr6 15543020 15543052 -166872190 + (TCC)n Simple_repeat Simple_repeat 2 33 0 269 348 28 7 chr6 15543069 15543210 -166872032 - MIR SINE MIR -99 163 20 2878 252 98 24 chr6 15544076 15545150 -166870092 - L1ME3A LINE L1 -5 6165 4942 1033 201 121 0 chr6 15545150 15545349 -166869893 + MER58A DNA MER1_type 1 223 -1 2878 252 98 24 chr6 15545349 15545952 -166869290 - L1ME3A LINE L1 -1228 4942 4385 2058 145 134 8 chr6 15546008 15546388 -166868854 + MSTA LTR MaLR 1 428 0 362 306 28 28 chr6 15546601 15546745 -166868497 + MIR3 SINE MIR 10 153 -55 234 216 20 0 chr6 15547498 15547549 -166867693 + MLT1J2 LTR MaLR 245 296 -154 1184 182 47 130 chr6 15547556 15547941 -166867301 - MLT1A1 LTR MaLR -12 353 1 472 317 12 30 chr6 15547941 15548105 -166867137 + MLT1J2 LTR MaLR 290 450 0 207 100 0 0 chr6 15548706 15548736 -166866506 + (T)n Simple_repeat Simple_repeat 1 30 0 362 287 33 16 chr6 15548943 15549065 -166866177 - MIR3 SINE MIR -15 193 70 2561 68 0 3 chr6 15549237 15549546 -166865696 + AluY SINE Alu 1 308 -3 213 65 0 0 chr6 15549591 15549622 -166865620 + (T)n Simple_repeat Simple_repeat 1 31 0 204 376 83 0 chr6 15549644 15549753 -166865489 - L2 LINE L2 -44 3228 3111 255 125 0 0 chr6 15549849 15549889 -166865353 + (CAG)n Simple_repeat Simple_repeat 1 40 0 328 326 20 0 chr6 15550430 15550528 -166864714 + MIR3 SINE MIR 91 190 -18 421 283 27 59 chr6 15550760 15550795 -166864447 + LTR33 LTR ERVL 22 57 -464 1472 214 65 89 chr6 15550795 15551347 -166863895 + MER34 LTR ERV1 4 542 0 421 283 27 59 chr6 15551347 15551498 -166863744 + LTR33 LTR ERVL 57 202 -319 578 279 5 30 chr6 15551553 15551750 -166863492 + LTR33 LTR ERVL 327 518 -3 534 346 75 16 chr6 15551935 15552319 -166862923 - L2 LINE L2 -356 2958 2552 2776 124 29 9 chr6 15552456 15552876 -166862366 - MSTA LTR MaLR 0 428 1 194 209 0 0 chr6 15553158 15553201 -166862041 - L2 LINE L2 -1 3312 3270 309 242 30 20 chr6 15553272 15553371 -166861871 + CT-rich Low_complexity Low_complexity 6 105 0 5516 167 12 3 chr6 15554398 15555291 -166859951 - MER54A LTR ERVL 0 901 1 2833 165 16 42 chr6 15555643 15555696 -166859546 + MER89 LTR ERV1 5 58 -501 2298 117 3 0 chr6 15555696 15555994 -166859248 + AluSp SINE Alu 1 299 -14 2833 165 16 42 chr6 15555994 15556510 -166858732 + MER89 LTR ERV1 58 559 0 2451 181 24 33 chr6 15557087 15557578 -166857664 + MER110 LTR ERV1 1 487 -4 2506 124 8 3 chr6 15558007 15558369 -166856873 + THE1B LTR MaLR 1 364 0 213 200 0 0 chr6 15558369 15558403 -166856839 + polypurine Low_complexity Low_complexity 7 40 0 207 0 0 0 chr6 15559304 15559327 -166855915 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 606 189 117 0 chr6 15559329 15559440 -166855802 - FLAM_A SINE Alu -9 124 1 217 281 122 0 chr6 15559481 15559563 -166855679 + L3 LINE CR1 1286 1377 -200 312 171 134 12 chr6 15559656 15559738 -166855504 + L1ME3A LINE L1 6079 6170 0 2388 95 0 0 chr6 15559807 15560101 -166855141 - AluSg SINE Alu -16 294 1 602 228 117 6 chr6 15561166 15561328 -166853914 - MIR SINE MIR -70 192 13 614 228 0 0 chr6 15561364 15561499 -166853743 + FLAM_A SINE Alu 3 137 0 303 335 32 32 chr6 15561549 15561707 -166853535 + HAL1 LINE L1 1109 1266 -1241 1148 173 28 14 chr6 15562076 15562290 -166852952 + MER58A DNA MER1_type 6 222 -2 272 294 42 0 chr6 15563515 15563634 -166851608 - MIR SINE MIR -98 164 41 245 360 44 0 chr6 15563717 15563831 -166851411 + L2 LINE L2 3190 3308 -5 324 201 103 121 chr6 15565279 15565453 -166849789 - MLT1H LTR MaLR -249 300 130 295 231 85 50 chr6 15565506 15565645 -166849597 - LTR45 LTR ERV1 0 783 390 45294 33 1 3 chr6 15565767 15571914 -166843328 + L1PA3 LINE L1 22 6155 0 24 0 0 0 chr6 15571914 15571938 -166843304 + AT_rich Low_complexity Low_complexity 1 24 0 7115 184 39 98 chr6 15572689 15574555 -166840687 + MER52A LTR ERV1 1 1755 0 909 165 74 0 chr6 15574701 15574877 -166840365 + MER5A DNA MER1_type 1 189 0 553 308 27 48 chr6 15575580 15575914 -166839328 + L1ME4a LINE L1 5381 5894 -227 * 3848 160 54 28 chr6 15575864 15576595 -166838647 + L1MB4 LINE L1 5381 6134 -46 2090 149 7 0 chr6 15576595 15576904 -166838338 + AluJb SINE Alu 1 311 -1 3848 160 54 28 chr6 15576904 15576936 -166838306 + L1MB4 LINE L1 6134 6164 -16 253 238 150 20 chr6 15577181 15577328 -166837914 + L1ME4a LINE L1 5944 6109 -12 477 0 0 0 chr6 15577765 15577818 -166837424 + (TG)n Simple_repeat Simple_repeat 2 54 0 3721 146 29 0 chr6 15578179 15578763 -166836479 + LTR26 LTR ERV1 1 601 -2 637 286 15 10 chr6 15578790 15578989 -166836253 + MIR SINE MIR 60 259 -3 319 260 0 0 chr6 15579459 15579536 -166835706 - L1ME3A LINE L1 -67 6103 6027 3868 263 103 28 chr6 15579551 15579705 -166835537 - L1M4 LINE L1 -1263 4883 4742 2206 116 7 0 chr6 15579705 15580015 -166835227 - AluSx SINE Alu 0 312 1 3868 263 103 28 chr6 15580015 15581645 -166833597 - L1M4 LINE L1 -1404 4742 2965 1923 145 0 7 chr6 15581646 15581936 -166833306 - AluSx SINE Alu -7 305 18 3534 242 150 22 chr6 15581963 15583286 -166831956 - L1MEc LINE L1 -4893 1503 12 216 0 0 0 chr6 15583621 15583645 -166831597 + (T)n Simple_repeat Simple_repeat 1 24 0 277 290 93 9 chr6 15583650 15583757 -166831485 - MIR SINE MIR -115 147 32 2012 97 15 4 chr6 15584051 15584319 -166830923 + AluY SINE Alu 22 292 -19 801 31 0 0 chr6 15584353 15584449 -166830793 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 21 0 0 0 chr6 15584487 15584508 -166830734 + AT_rich Low_complexity Low_complexity 1 21 0 1982 143 0 22 chr6 15584892 15585207 -166830035 - AluJo SINE Alu -4 308 1 418 215 43 0 chr6 15585248 15585341 -166829901 - MIR SINE MIR -67 141 45 1931 131 3 33 chr6 15586135 15586440 -166828802 + AluSx SINE Alu 1 296 -16 1959 176 39 53 chr6 15588235 15588702 -166826540 - MER88 LTR ERVL 0 464 5 240 35 0 0 chr6 15589207 15589236 -166826006 + (TAA)n Simple_repeat Simple_repeat 3 31 0 581 260 80 92 chr6 15589248 15589498 -166825744 - MIR SINE MIR -15 247 1 3851 111 4 93 chr6 15589562 15589628 -166825614 + MER39B LTR ERV1 1 71 -582 2100 113 31 0 chr6 15589628 15589920 -166825322 + AluSx SINE Alu 1 301 -11 3851 111 4 93 chr6 15589920 15590402 -166824840 + MER39B LTR ERV1 71 478 -175 2326 75 0 7 chr6 15590402 15590696 -166824546 + AluSc SINE Alu 1 292 -17 3851 111 4 93 chr6 15590696 15590832 -166824410 + MER39B LTR ERV1 478 625 -28 670 177 8 0 chr6 15590911 15591035 -166824207 - MIR SINE MIR -106 156 32 1080 187 35 5 chr6 15592168 15592371 -166822871 + MER3 DNA MER1_type 1 209 0 267 324 113 11 chr6 15592732 15592917 -166822325 + L2 LINE L2 2552 2755 -559 296 250 170 0 chr6 15593028 15593128 -166822114 + L2 LINE L2 3197 3313 0 1359 194 37 23 chr6 15593389 15593688 -166821554 + AluJo SINE Alu 7 309 -3 1705 167 12 86 chr6 15594412 15594831 -166820411 + MLT1B LTR MaLR 3 390 0 1936 218 102 20 chr6 15598664 15599165 -166816077 - MLT1F LTR MaLR 0 542 1 180 0 0 0 chr6 15599368 15599388 -166815854 + (A)n Simple_repeat Simple_repeat 1 20 0 683 106 0 29 chr6 15600571 15600675 -166814567 - AluSg SINE Alu -208 102 2 311 237 103 0 chr6 15600930 15601027 -166814215 + MIR SINE MIR 116 222 -40 2640 44 0 0 chr6 15605058 15605355 -166809887 - AluY SINE Alu -14 297 1 2625 181 22 52 chr6 15605416 15605652 -166809590 - MER44D DNA MER2_type -1882 605 363 1746 161 11 7 chr6 15605652 15605937 -166809305 - AluJo SINE Alu -26 286 1 2625 181 22 52 chr6 15605937 15606254 -166808988 - MER44D DNA MER2_type -2124 363 14 314 133 0 0 chr6 15606475 15606520 -166808722 - MLT2B1 LTR ERVL -61 459 415 1279 203 8 23 chr6 15606524 15606790 -166808452 - MLT2B1 LTR ERVL -258 262 1 226 365 47 7 chr6 15606832 15606980 -166808262 + MIR SINE MIR 1 154 -108 1170 180 86 23 chr6 15607372 15607628 -166807614 + MLT1B LTR MaLR 2 273 -117 1989 105 7 17 chr6 15607649 15607945 -166807297 + AluSc SINE Alu 17 309 0 2332 193 80 12 chr6 15608536 15608577 -166806665 - MLT2B1 LTR ERVL 0 520 483 222 37 0 0 chr6 15608577 15608604 -166806638 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 2332 193 80 12 chr6 15608604 15609049 -166806193 - MLT2B1 LTR ERVL -37 483 1 2896 13 0 0 chr6 15609513 15609822 -166805420 - AluYb8 SINE Alu -9 309 1 1583 147 29 111 chr6 15610816 15611196 -166804046 - MLT1B LTR MaLR -9 381 33 1064 142 7 0 chr6 15611206 15611361 -166803881 - FRAM SINE Alu -22 154 1 255 257 157 81 chr6 15611646 15611907 -166803335 + HAL1 LINE L1 8 288 -2219 390 265 90 41 chr6 15611933 15612178 -166803064 + L2 LINE L2 2204 2460 -854 2096 270 69 4 chr6 15612193 15612742 -166802500 + L1MDa LINE L1 55 639 -5901 * 4079 207 55 7 chr6 15612737 15613835 -166801407 + L1MDa LINE L1 2543 3692 -2848 2088 144 0 7 chr6 15613842 15614148 -166801094 + AluSx SINE Alu 1 304 -8 770 81 9 0 chr6 15614162 15614207 -166801035 + (GGGAA)n Simple_repeat Simple_repeat 1 157 0 770 81 9 0 chr6 15614207 15614318 -166800924 + (GGGAA)n Simple_repeat Simple_repeat 5 116 0 603 273 34 61 chr6 15614339 15614503 -166800739 + L1MDa LINE L1 3647 3801 -2739 2364 74 20 3 chr6 15614503 15614801 -166800441 + AluSg SINE Alu 1 303 -7 603 273 34 61 chr6 15614801 15614933 -166800309 + L1MDa LINE L1 3801 3935 -2605 1389 214 126 10 chr6 15614935 15615341 -166799901 + HAL1 LINE L1 1466 1918 -589 1253 244 44 60 chr6 15615377 15615898 -166799344 + HAL1 LINE L1 1995 2507 0 2157 102 3 3 chr6 15615923 15616206 -166799036 - AluSq SINE Alu -17 296 14 28 0 0 0 chr6 15616903 15616931 -166798311 + AT_rich Low_complexity Low_complexity 1 28 0 1869 144 4 7 chr6 15616966 15617265 -166797977 + AluJb SINE Alu 17 314 0 567 219 116 30 chr6 15617321 15617485 -166797757 - MER45A DNA AcHobo 0 178 1 2048 104 0 4 chr6 15617591 15617860 -166797382 + AluSx SINE Alu 35 302 -10 270 0 0 0 chr6 15619687 15619717 -166795525 + (A)n Simple_repeat Simple_repeat 1 30 0 775 312 87 25 chr6 15619872 15620388 -166794854 - L1MC4a LINE L1 -1875 5933 5386 1009 196 28 0 chr6 15621124 15621303 -166793939 + MER20 DNA MER1_type 36 219 0 1468 207 70 6 chr6 15621423 15621766 -166793476 - MLT1A1 LTR MaLR 0 365 1 562 237 175 65 chr6 15622284 15622685 -166792557 + MLT1H LTR MaLR 96 540 -9 536 170 104 22 chr6 15623748 15623883 -166791359 + MLT1H LTR MaLR 396 541 -8 2247 129 7 45 chr6 15625402 15625805 -166789437 + MLT1B LTR MaLR 1 388 -2 238 206 55 27 chr6 15627163 15627236 -166788006 - L2 LINE L2 -1 3271 3197 189 147 0 0 chr6 15628505 15628539 -166786703 + (CAT)n Simple_repeat Simple_repeat 2 35 0 212 349 45 15 chr6 15628539 15628671 -166786571 - MIR SINE MIR -71 191 56 336 313 38 0 chr6 15628909 15629040 -166786202 - MIR SINE MIR -21 241 106 1222 204 0 9 chr6 15629505 15629726 -166785516 - MER20 DNA MER1_type 0 219 1 525 281 36 10 chr6 15630053 15630245 -166784997 + MIR SINE MIR 53 249 -13 270 0 0 0 chr6 15630974 15631004 -166784238 + (GA)n Simple_repeat Simple_repeat 1 30 0 782 216 52 39 chr6 15631596 15631748 -166783494 + MIR SINE MIR 3 160 -102 1868 224 42 11 chr6 15631748 15632198 -166783044 - MLT1C LTR MaLR 0 467 4 782 216 52 39 chr6 15632198 15632276 -166782966 + MIR SINE MIR 160 236 -26 228 287 64 75 chr6 15632275 15632463 -166782779 - MIR SINE MIR -59 203 18 * 1486 109 41 5 chr6 15632684 15632905 -166782337 - MER30 DNA MER1_type 0 230 2 612 251 72 43 chr6 15633030 15633237 -166782005 - MIR SINE MIR -26 236 24 488 281 133 3 chr6 15633237 15633448 -166781794 - L1MC/D LINE L1 -345 5776 5572 43 92 0 0 chr6 15633900 15634020 -166781222 + AT_rich Low_complexity Low_complexity 1 120 0 521 213 0 0 chr6 15634020 15634114 -166781128 + Tigger7 DNA MER2_type 1 94 -611 * 903 200 24 6 chr6 15634112 15634282 -166780960 - MER105 DNA DNA -31 173 1 327 276 74 36 chr6 15634377 15634652 -166780590 - L1MC/D LINE L1 -629 5533 5247 240 372 36 29 chr6 15634796 15634933 -166780309 - L2 LINE L2 -1 3271 3134 388 237 53 24 chr6 15636050 15636219 -166779023 - Charlie7 DNA MER1_type 0 2612 2439 379 247 10 21 chr6 15636205 15636302 -166778940 - Charlie7 DNA MER1_type -2516 96 1 * 343 240 0 0 chr6 15636303 15636378 -166778864 - MIR SINE MIR -71 137 63 2104 120 7 0 chr6 15637398 15637681 -166777561 + AluSp SINE Alu 1 285 -28 363 44 0 0 chr6 15637682 15637727 -166777515 + (GGAGAA)n Simple_repeat Simple_repeat 5 49 0 1822 168 0 19 chr6 15637868 15638178 -166777064 + AluJb SINE Alu 1 304 -8 322 259 80 9 chr6 15638182 15638294 -166776948 + MIR SINE MIR 84 203 -59 355 279 116 52 chr6 15638805 15639038 -166776204 + LTR16C LTR ERVL 244 491 0 3607 111 38 30 chr6 15639087 15639612 -166775630 - MER1A DNA MER1_type 0 529 1 1035 221 0 35 chr6 15639618 15639849 -166775393 + MER58A DNA MER1_type 2 224 0 222 140 140 0 chr6 15639850 15639907 -166775335 + MER5A DNA MER1_type 10 74 -115 483 287 41 83 chr6 15640058 15640230 -166775012 - Charlie8 DNA MER1_type -1916 501 323 2137 131 3 0 chr6 15640230 15640527 -166774715 - AluSx SINE Alu -14 298 1 483 287 41 83 chr6 15640527 15640838 -166774404 - Charlie8 DNA MER1_type -2094 323 38 246 316 79 0 chr6 15641522 15641674 -166773568 + MIR SINE MIR 45 208 -54 343 183 0 0 chr6 15643529 15643589 -166771653 + MIR3 SINE MIR 107 166 -42 1434 81 0 0 chr6 15643880 15644066 -166771176 - L1PA8 LINE L1 -8 6164 5979 434 257 47 29 chr6 15644111 15644291 -166770951 - L1MC/D LINE L1 -371 5750 5579 2265 103 3 3 chr6 15645066 15645367 -166769875 + AluSg SINE Alu 1 301 -9 200 299 0 124 chr6 15645593 15645730 -166769512 + L3 LINE CR1 1393 1512 -65 5014 87 10 9 chr6 15647231 15647912 -166767330 + L1PA11 LINE L1 5492 6173 -1 284 331 92 11 chr6 15648043 15648327 -166766915 + LTR16A LTR ERVL 60 366 -84 1723 211 64 10 chr6 15648414 15648821 -166766421 + L1MB2 LINE L1 5741 6169 -2 3415 306 43 28 chr6 15648840 15650196 -166765046 + HERV16 LTR ERVL 39 1415 -3581 2504 132 3 6 chr6 15650406 15650771 -166764471 - THE1B LTR MaLR 0 364 1 1611 270 69 15 chr6 15650883 15651406 -166763836 + HERV16 LTR ERVL 1841 2391 -2605 367 329 10 13 chr6 15651540 15651833 -166763409 + MERVL LTR ERVL 4731 5097 -667 436 328 90 4 chr6 15652046 15652314 -166762928 + LTR16A LTR ERVL 148 438 -12 824 176 0 0 chr6 15652472 15652597 -166762645 + FLAM_C SINE Alu 1 125 -18 2271 109 0 16 chr6 15653161 15653473 -166761769 + AluSc SINE Alu 1 307 -2 180 0 0 0 chr6 15654067 15654087 -166761155 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 343 262 113 21 chr6 15654111 15654252 -166760990 - MER5B DNA MER1_type -7 171 18 771 307 96 54 chr6 15654518 15655091 -166760151 + L3 LINE CR1 185 781 -796 603 351 62 27 chr6 15655091 15655573 -166759669 + L3 LINE CR1 1076 1574 -3 2400 204 24 22 chr6 15656627 15657166 -166758076 + MER74A LTR ERVL 1 540 -18 2384 86 3 3 chr6 15657173 15657486 -166757756 + AluSp SINE Alu 1 313 0 765 278 86 42 chr6 15657493 15658132 -166757110 + L2 LINE L2 2637 3313 0 748 234 97 21 chr6 15659297 15659535 -166755707 - MIR SINE MIR -1 261 3 484 270 68 14 chr6 15659905 15660053 -166755189 - MER63A DNA MER1_type 0 210 55 204 158 0 0 chr6 15660053 15660091 -166755151 + (TG)n Simple_repeat Simple_repeat 1 38 0 369 241 191 6 chr6 15660467 15660629 -166754613 + MIR SINE MIR 37 228 -34 206 369 67 13 chr6 15660743 15660892 -166754350 + L2 LINE L2 2904 3060 -212 357 234 109 8 chr6 15661122 15661250 -166753992 - MIR3 SINE MIR -7 201 61 4626 95 0 3 chr6 15661683 15662304 -166752938 + L1PA11 LINE L1 5546 6164 -10 180 0 0 0 chr6 15662309 15662329 -166752913 + (TAA)n Simple_repeat Simple_repeat 2 21 0 261 251 185 71 chr6 15662355 15662566 -166752676 + L2 LINE L2 3078 3312 -1 704 274 102 45 chr6 15662602 15663112 -166752130 - L1MEc LINE L1 -3009 3206 2668 31 0 0 0 chr6 15663127 15663158 -166752084 + AT_rich Low_complexity Low_complexity 1 31 0 483 331 56 43 chr6 15663383 15663851 -166751391 - L1MEc LINE L1 -4619 1777 1304 315 0 0 0 chr6 15663852 15663887 -166751355 + (TTC)n Simple_repeat Simple_repeat 2 36 0 238 229 0 49 chr6 15663941 15664002 -166751240 + MER3 DNA MER1_type 41 98 -111 198 103 0 0 chr6 15664197 15664226 -166751016 + (TA)n Simple_repeat Simple_repeat 1 29 0 441 54 0 0 chr6 15664255 15664311 -166750931 + (CA)n Simple_repeat Simple_repeat 2 57 0 315 297 0 85 chr6 15664340 15664505 -166750737 - L1MEc LINE L1 -5538 667 517 1087 192 65 39 chr6 15664799 15665059 -166750183 + L1MD3 LINE L1 7582 7848 -147 1075 128 0 0 chr6 15665071 15665227 -166750015 - AluSg/x SINE Alu -3 307 152 645 139 93 0 chr6 15665236 15665365 -166749877 + L1MD3 LINE L1 7855 7995 0 527 90 0 8 chr6 15665428 15665650 -166749592 + AluY SINE Alu 1 301 -11 2386 186 21 21 chr6 15666021 15666131 -166749111 + MLT1C LTR MaLR 1 110 -357 2494 149 84 0 chr6 15666131 15666548 -166748694 + LTR47A LTR ERVL 1 452 0 2386 186 21 21 chr6 15666548 15666904 -166748338 + MLT1C LTR MaLR 109 467 0 1038 214 54 44 chr6 15668096 15668413 -166746829 - MER33 DNA MER1_type 0 324 5 34 0 0 0 chr6 15669254 15669288 -166745954 + AT_rich Low_complexity Low_complexity 1 34 0 528 145 0 0 chr6 15669288 15669364 -166745878 - FAM SINE Alu -22 163 88 922 219 48 88 chr6 15669396 15669647 -166745595 - MLT1F LTR MaLR -294 248 8 2071 92 37 7 chr6 15670583 15670893 -166744349 + AluSg SINE Alu 1 318 0 359 282 53 62 chr6 15672254 15672463 -166742779 + HAL1 LINE L1 31 237 -2270 207 0 0 0 chr6 15672596 15672619 -166742623 + (CAA)n Simple_repeat Simple_repeat 2 24 0 894 241 55 43 chr6 15672619 15672964 -166742278 + HAL1 LINE L1 1745 2093 -414 2030 183 66 29 chr6 15673041 15673081 -166742161 - MSTB LTR MaLR 0 426 389 2275 89 14 0 chr6 15673081 15673374 -166741868 + AluSq SINE Alu 1 297 -16 2030 183 66 29 chr6 15673374 15673744 -166741498 - MSTB LTR MaLR -37 389 1 2586 170 74 2 chr6 15673744 15674215 -166741027 - MSTB-int LTR MaLR 0 1651 1147 306 0 0 0 chr6 15676877 15676911 -166738331 + (CA)n Simple_repeat Simple_repeat 2 35 0 713 272 0 0 chr6 15676932 15677105 -166738137 + MIR SINE MIR 4 176 -86 2135 75 0 8 chr6 15677245 15677511 -166737731 + AluY SINE Alu 1 264 -47 2022 234 66 55 chr6 15677863 15678411 -166736831 + MLT2B3 LTR ERVL 1 554 0 219 315 0 14 chr6 15678523 15678596 -166736646 - MIR SINE MIR -189 73 2 180 333 0 0 chr6 15680400 15680457 -166734785 + L2 LINE L2 3256 3312 -1 2494 262 12 4 chr6 15682070 15682632 -166732610 + MLT1F1 LTR MaLR 1 567 0 220 279 44 0 chr6 15683191 15683259 -166731983 - MIR SINE MIR -69 193 123 1605 311 85 14 chr6 15684521 15685377 -166729865 + L2 LINE L2 1978 2894 -420 1825 154 175 21 chr6 15686113 15686535 -166728707 + LTR10A LTR ERV1 15 548 -61 252 304 133 13 chr6 15688357 15688515 -166726727 + MIR SINE MIR 48 224 -38 2321 117 122 8 chr6 15688842 15689226 -166726016 + MSTA LTR MaLR 1 428 0 2054 145 3 0 chr6 15689707 15690011 -166725231 + AluSq SINE Alu 1 305 -8 384 238 0 24 chr6 15691269 15691353 -166723889 + MLT1K LTR MaLR 433 514 -74 932 63 87 0 chr6 15691783 15691910 -166723332 + MER85 DNA T2_type 1 138 -1 1480 257 158 19 chr6 15692009 15692527 -166722715 - MLT1F1 LTR MaLR 0 567 4 198 0 0 0 chr6 15692773 15692795 -166722447 + (CA)n Simple_repeat Simple_repeat 2 23 0 4632 171 32 22 chr6 15692878 15693869 -166721373 - Charlie1a DNA MER1_type -6 1449 449 888 201 0 13 chr6 15693885 15694044 -166721198 + FRAM SINE Alu 1 157 -19 243 0 0 0 chr6 15694051 15694078 -166721164 + (CA)n Simple_repeat Simple_repeat 2 28 0 1281 192 31 102 chr6 15694092 15694525 -166720717 - Charlie1a DNA MER1_type -1035 420 29 1846 128 29 42 chr6 15694876 15695189 -166720053 + AluJo SINE Alu 1 309 -3 225 0 0 0 chr6 15695774 15695799 -166719443 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 148 3 0 chr6 15696259 15696557 -166718685 + AluSx SINE Alu 1 299 -13 2167 267 89 9 chr6 15696634 15697440 -166717802 + L1ME3A LINE L1 5295 6165 -5 237 280 27 0 chr6 15697706 15697781 -166717461 - L2 LINE L2 -25 3247 3171 180 179 0 0 chr6 15698607 15698646 -166716596 + GA-rich Low_complexity Low_complexity 2 40 0 524 261 137 0 chr6 15699819 15699972 -166715270 + MER5A DNA MER1_type 9 182 -7 491 324 55 21 chr6 15700131 15700369 -166714873 + MLT1K LTR MaLR 334 579 -9 1794 224 75 27 chr6 15701765 15702247 -166712995 - MLT1D LTR MaLR 0 505 1 261 300 133 0 chr6 15704232 15704322 -166710920 - MIR SINE MIR -126 136 35 225 139 0 0 chr6 15704507 15704550 -166710692 + (TC)n Simple_repeat Simple_repeat 1 43 0 263 330 0 0 chr6 15704670 15704758 -166710484 - MIR SINE MIR -55 207 120 977 212 33 24 chr6 15705637 15705849 -166709393 - MER58C DNA MER1_type 0 215 2 197 222 62 49 chr6 15706109 15706190 -166709052 + MIR SINE MIR 73 154 -108 472 238 86 13 chr6 15706679 15706830 -166708412 + MIR3 SINE MIR 33 194 -14 889 169 54 33 chr6 15708628 15708812 -166706430 + MER5A DNA MER1_type 2 189 0 327 294 70 47 chr6 15709599 15709813 -166705429 + L2 LINE L2 3067 3285 -28 223 235 12 74 chr6 15710324 15710405 -166704837 - MIR SINE MIR -46 216 141 2090 112 0 7 chr6 15710626 15710929 -166704313 - AluSg SINE Alu -9 301 1 270 203 14 43 chr6 15711651 15711720 -166703522 + G-rich Low_complexity Low_complexity 4 70 0 411 56 0 0 chr6 15712152 15712206 -166703036 + (TG)n Simple_repeat Simple_repeat 1 54 0 1740 202 62 29 chr6 15712256 15712706 -166702536 - MLT1C LTR MaLR -2 465 1 222 426 0 0 chr6 15712980 15713081 -166702161 - MIR SINE MIR -3 259 159 461 285 207 6 chr6 15713100 15713279 -166701963 - MIR SINE MIR -21 241 27 223 244 31 87 chr6 15713683 15713810 -166701432 + L2 LINE L2 2661 2780 -534 956 200 28 5 chr6 15714169 15714384 -166700858 - L1MB2 LINE L1 -12 6159 5940 328 281 130 65 chr6 15717060 15717245 -166697997 - MIR SINE MIR -19 243 47 1128 163 76 58 chr6 15717653 15717821 -166697421 + L1MB4 LINE L1 5892 6068 -112 441 54 0 0 chr6 15717821 15717877 -166697365 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1128 163 76 58 chr6 15717877 15717985 -166697257 + L1MB4 LINE L1 6068 6173 -7 2009 162 3 21 chr6 15717985 15718361 -166696881 + L1MB3 LINE L1 5813 6181 -2 343 282 43 8 chr6 15720406 15720523 -166694719 - MIR SINE MIR 0 262 142 2158 138 40 0 chr6 15720523 15720871 -166694371 + MLT2D LTR ERVL 5 366 -48 241 169 15 31 chr6 15720890 15720955 -166694287 + T-rich Low_complexity Low_complexity 5 68 0 247 167 0 0 chr6 15720979 15721021 -166694221 + MLT2D LTR ERVL 348 389 -8 * 253 56 111 0 chr6 15720989 15721025 -166694217 + MLT2B1 LTR ERVL 481 520 0 417 298 15 15 chr6 15721025 15721156 -166694086 - MIR SINE MIR -117 145 15 258 299 109 40 chr6 15721300 15721474 -166693768 + MIR SINE MIR 21 206 -56 628 307 36 13 chr6 15722189 15722414 -166692828 - MIR SINE MIR -29 233 4 242 273 224 14 chr6 15722464 15722607 -166692635 + MIR3 SINE MIR 33 205 -3 212 261 15 15 chr6 15723644 15723709 -166691533 + L2 LINE L2 3004 3068 -204 285 264 186 0 chr6 15725815 15725944 -166689298 - MIR3 SINE MIR -23 185 33 479 165 146 0 chr6 15726214 15726317 -166688925 + MER96 DNA MER1_type? 50 167 -8 273 57 0 0 chr6 15727335 15727370 -166687872 + (TG)n Simple_repeat Simple_repeat 2 36 0 246 81 0 0 chr6 15728185 15728222 -166687020 + (CA)n Simple_repeat Simple_repeat 1 37 0 355 331 25 16 chr6 15729549 15729670 -166685572 - MIR SINE MIR -71 137 16 181 238 0 0 chr6 15729681 15729723 -166685519 - L3 LINE CR1 -148 1429 1388 221 364 61 23 chr6 15730326 15730458 -166684784 - L2 LINE L2 0 3272 3136 273 255 49 49 chr6 15730494 15730596 -166684646 + L2 LINE L2 2988 3089 -183 279 133 0 0 chr6 15730775 15730820 -166684422 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1979 115 0 7 chr6 15731923 15732209 -166683033 + AluSx SINE Alu 17 300 -12 643 154 29 0 chr6 15732309 15732413 -166682829 + U6 snRNA snRNA 1 107 0 202 242 145 0 chr6 15732798 15732860 -166682382 - L3 LINE CR1 -4 1573 1503 2151 111 0 0 chr6 15732876 15733182 -166682060 + AluY SINE Alu 1 306 -5 2170 112 0 0 chr6 15733541 15733845 -166681397 - AluSc SINE Alu -5 304 1 1380 228 132 41 chr6 15734347 15734808 -166680434 - MLT1D LTR MaLR 0 505 3 345 193 0 0 chr6 15736721 15736778 -166678464 - L2 LINE L2 -12 3260 3204 437 313 60 43 chr6 15737261 15737494 -166677748 - L3 LINE CR1 -33 1544 1308 1284 235 150 22 chr6 15737954 15738402 -166676840 + MLT1D LTR MaLR 1 626 0 1207 261 14 14 chr6 15739477 15739760 -166675482 + Tigger8 DNA MER2_type 4 286 -380 592 236 72 29 chr6 15739816 15740024 -166675218 + Tigger8 DNA MER2_type 421 637 -29 703 226 167 16 chr6 15740232 15740418 -166674824 + MER20 DNA MER1_type 1 214 -5 2458 133 25 46 chr6 15740523 15740958 -166674284 - MSTB LTR MaLR 0 426 1 724 279 88 0 chr6 15741029 15741244 -166673998 - MIR SINE MIR 0 262 29 272 268 98 0 chr6 15742322 15742434 -166672808 - MIR SINE MIR -8 254 132 1207 233 41 80 chr6 15742435 15742895 -166672347 - L1ME3A LINE L1 -9 6161 5720 364 267 92 30 chr6 15742898 15743029 -166672213 - MIR SINE MIR -123 139 1 1812 163 17 98 chr6 15744236 15744646 -166670596 - MLT1B LTR MaLR -9 381 5 207 0 0 0 chr6 15745082 15745105 -166670137 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 295 330 231 14 chr6 15746188 15746482 -166668760 - L2 LINE L2 0 3272 2915 291 371 61 35 chr6 15746950 15747292 -166667950 - L2 LINE L2 -80 3192 2842 756 165 0 45 chr6 15747653 15747815 -166667427 + FRAM SINE Alu 20 175 0 359 356 127 28 chr6 15748489 15748843 -166666399 - L2 LINE L2 -1149 2165 1777 1873 159 35 35 chr6 15748846 15749089 -166666153 - MER7A DNA MER2_type -2693 345 102 2040 127 0 13 chr6 15749089 15749405 -166665837 + AluSx SINE Alu 1 312 0 1873 159 35 35 chr6 15749405 15749507 -166665735 - MER7A DNA MER2_type -2935 103 2 274 220 285 19 chr6 15749638 15749852 -166665390 + L1ME4a LINE L1 5813 6083 -38 2095 68 24 31 chr6 15751335 15751627 -166663615 + AluSp SINE Alu 1 290 -23 4461 156 103 14 chr6 15751631 15752446 -166662796 - MER54A LTR ERVL -13 888 1 3325 190 50 106 chr6 15752457 15753183 -166662059 - L1MC5 LINE L1 -75 7886 7262 782 168 158 16 chr6 15753183 15753373 -166661869 + MER20 DNA MER1_type 1 217 -2 3325 190 50 106 chr6 15753373 15753928 -166661314 - L1MC5 LINE L1 -699 7262 6677 1627 82 0 0 chr6 15754399 15754607 -166660635 + AluSc SINE Alu 1 208 -101 266 216 0 0 chr6 15754607 15754658 -166660584 + AluSc SINE Alu 249 299 0 189 0 0 0 chr6 15755263 15755284 -166659958 + (T)n Simple_repeat Simple_repeat 1 21 0 602 221 108 28 chr6 15757451 15757664 -166657578 + MLT1J2 LTR MaLR 17 246 -204 624 205 13 128 chr6 15757764 15757986 -166657256 + MLT1J2 LTR MaLR 259 409 0 189 339 0 0 chr6 15758005 15758061 -166657181 + MIR SINE MIR 182 237 -25 222 222 44 0 chr6 15758061 15758106 -166657136 + L2 LINE L2 3205 3251 -21 1663 191 36 28 chr6 15758305 15758667 -166656575 + MLT1A1 LTR MaLR 1 365 0 540 253 62 7 chr6 15758941 15759087 -166656155 + MER97b DNA MER1_type? 8 161 -892 342 171 13 13 chr6 15759609 15759685 -166655557 - L1MB8 LINE L1 -104 6074 5999 2282 138 30 54 chr6 15759818 15760245 -166654997 + MSTC LTR MaLR 1 417 -11 365 336 30 8 chr6 15760665 15760799 -166654443 - MIR SINE MIR -79 183 47 230 320 95 35 chr6 15760813 15761013 -166654229 - MLT1J LTR MaLR -3 508 297 253 243 40 27 chr6 15761027 15761101 -166654141 - MLT1L LTR MaLR -318 297 223 258 253 20 71 chr6 15762223 15762322 -166652920 + MIR3 SINE MIR 110 203 -5 231 268 102 24 chr6 15762402 15762529 -166652713 - MIR SINE MIR -10 252 116 736 225 95 161 chr6 15762542 15763581 -166651661 + L2 LINE L2 2295 3296 -17 22 35 0 0 chr6 15764330 15764359 -166650883 + AT_rich Low_complexity Low_complexity 1 29 0 3058 48 0 16 chr6 15764368 15764742 -166650500 - L1PA8 LINE L1 -1 6171 5804 246 149 64 0 chr6 15764913 15764960 -166650282 + MER54A LTR ERVL 337 386 -515 2143 113 0 10 chr6 15765025 15765327 -166649915 - AluSq SINE Alu -12 301 3 2038 203 19 7 chr6 15765438 15765871 -166649371 + MER114 LTR ERV 1 438 -210 383 239 18 9 chr6 15765909 15766018 -166649224 + MER114 LTR ERV 539 648 0 2177 110 3 0 chr6 15767050 15767350 -166647892 - AluSg SINE Alu -9 301 1 180 0 0 0 chr6 15767362 15767382 -166647860 + (T)n Simple_repeat Simple_repeat 1 20 0 331 314 24 32 chr6 15767763 15767887 -166647355 + MIR SINE MIR 25 147 -115 1143 157 13 55 chr6 15767888 15768124 -166647118 + L1MB5 LINE L1 5799 6024 -150 1526 187 43 82 chr6 15768124 15768563 -166646679 + MLT1C LTR MaLR 1 422 -45 740 184 0 7 chr6 15768575 15768716 -166646526 + L1MB5 LINE L1 6025 6164 -10 366 230 35 0 chr6 15768768 15768855 -166646387 + MIR SINE MIR 173 262 0 3015 103 37 18 chr6 15768985 15769026 -166646216 - MLT2A1 LTR ERVL 0 444 405 387 0 0 0 chr6 15769026 15769069 -166646173 + (CA)n Simple_repeat Simple_repeat 2 44 0 3015 103 37 18 chr6 15769069 15769463 -166645779 - MLT2A1 LTR ERVL -39 405 1 596 298 88 17 chr6 15770817 15771055 -166644187 - MIR SINE MIR 0 262 8 216 0 0 0 chr6 15771275 15771299 -166643943 + (A)n Simple_repeat Simple_repeat 1 24 0 222 253 0 27 chr6 15771421 15771496 -166643746 + A-rich Low_complexity Low_complexity 3 75 0 3600 129 17 17 chr6 15772067 15772594 -166642648 - MER1A DNA MER1_type 0 527 1 299 290 0 0 chr6 15772740 15772809 -166642433 + L1ME LINE L1 5525 5593 -528 1867 126 0 0 chr6 15773205 15773460 -166641782 - AluSx SINE Alu -5 307 53 2021 115 7 7 chr6 15773497 15773776 -166641466 - AluSx SINE Alu -19 293 15 554 274 142 5 chr6 15773846 15774036 -166641206 + MIR SINE MIR 47 262 0 190 362 57 29 chr6 15774026 15774131 -166641111 - L2 LINE L2 -3 3269 3162 * 1077 214 106 65 chr6 15774155 15774477 -166640765 + MER2 DNA MER2_type 3 337 -8 204 306 42 14 chr6 15774796 15774868 -166640374 - MIR SINE MIR -88 120 47 554 239 61 61 chr6 15775422 15775635 -166639607 + MIR SINE MIR 20 232 -30 2241 86 4 0 chr6 15775700 15775980 -166639262 + AluSp SINE Alu 1 281 -32 2078 99 23 30 chr6 15776760 15777062 -166638180 - AluSq SINE Alu -13 300 1 370 343 50 14 chr6 15777612 15777752 -166637490 + MIR SINE MIR 43 187 -75 495 230 24 8 chr6 15778113 15778239 -166637003 - MER94 DNA DNA 0 134 7 314 189 47 9 chr6 15778495 15778601 -166636641 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 535 44 108 0 chr6 15778601 15778759 -166636483 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 0 0 0 chr6 15778823 15778850 -166636392 + AT_rich Low_complexity Low_complexity 1 27 0 405 243 62 35 chr6 15779604 15779748 -166635494 + MLT1L LTR MaLR 466 613 -2 533 289 44 72 chr6 15780210 15780459 -166634783 + MIR SINE MIR 21 262 0 2257 92 0 0 chr6 15780964 15781270 -166633972 - AluSx SINE Alu 0 306 1 753 280 88 79 chr6 15782389 15782697 -166632545 + Charlie7 DNA MER1_type 89 404 -2208 2404 90 0 19 chr6 15782697 15783008 -166632234 + AluSq SINE Alu 1 305 -8 753 280 88 79 chr6 15783008 15783131 -166632111 + Charlie7 DNA MER1_type 404 524 -2088 1083 142 7 0 chr6 15783224 15783414 -166631828 + AluSg/x SINE Alu 130 320 0 967 213 36 0 chr6 15783416 15783641 -166631601 + Charlie7 DNA MER1_type 599 831 -1781 24 53 0 0 chr6 15783668 15783706 -166631536 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr6 15783735 15783762 -166631480 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr6 15783762 15783783 -166631459 + AT_rich Low_complexity Low_complexity 1 21 0 2248 109 0 3 chr6 15783923 15784227 -166631015 + AluSx SINE Alu 1 303 -9 694 259 132 9 chr6 15784305 15784533 -166630709 + MIR SINE MIR 7 262 0 222 118 0 0 chr6 15784535 15784569 -166630673 + (TTA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr6 15784701 15784736 -166630506 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1729 164 4 7 chr6 15784736 15785017 -166630225 - AluJb SINE Alu -32 280 1 1617 145 4 0 chr6 15785023 15785257 -166629985 - AluSx SINE Alu -77 235 1 233 302 71 78 chr6 15785267 15785562 -166629680 + L2 LINE L2 3021 3313 0 274 356 61 0 chr6 15785705 15785837 -166629405 + MIR3 SINE MIR 38 177 -31 2958 152 12 0 chr6 15785885 15786306 -166628936 + MSTB LTR MaLR 1 426 0 880 95 16 0 chr6 15786594 15786720 -166628522 + L1MA8 LINE L1 6154 6281 -10 333 328 120 20 chr6 15786741 15787084 -166628158 - LTR33A LTR ERVL -106 415 54 2185 114 0 0 chr6 15787177 15787466 -166627776 - AluSx SINE Alu -15 297 9 270 95 0 0 chr6 15788600 15788642 -166626600 + (GA)n Simple_repeat Simple_repeat 2 43 0 236 302 53 0 chr6 15788714 15788801 -166626441 + MIR SINE MIR 77 168 -61 1914 134 33 0 chr6 15788905 15789180 -166626062 - AluSg SINE Alu -26 284 1 200 350 40 20 chr6 15789772 15789872 -166625370 + MIR SINE MIR 38 139 -69 231 336 254 0 chr6 15790009 15790131 -166625111 + MER91A DNA MER1_type 3 155 -41 271 279 174 0 chr6 15792779 15792865 -166622377 - MIR SINE MIR -75 187 87 2321 93 3 3 chr6 15794612 15794914 -166620328 + AluSg SINE Alu 1 302 -8 1264 264 40 46 chr6 15795997 15796546 -166618696 - L2 LINE L2 -4 3309 2767 993 237 176 0 chr6 15796551 15797142 -166618100 - LTR50 LTR ERVL -3 792 2 858 221 172 50 chr6 15797143 15797470 -166617772 - L2 LINE L2 -545 2769 2483 2037 125 11 0 chr6 15797470 15797750 -166617492 + AluSx SINE Alu 20 302 -10 858 221 172 50 chr6 15797750 15797875 -166617367 - L2 LINE L2 -831 2483 2183 288 359 124 17 chr6 15797900 15798134 -166617108 + MIR SINE MIR 3 261 -1 24 0 0 0 chr6 15798353 15798377 -166616865 + AT_rich Low_complexity Low_complexity 1 24 0 588 150 177 0 chr6 15798377 15798490 -166616752 - FLAM_C SINE Alu 0 133 1 615 265 86 6 chr6 15799495 15799657 -166615585 + MER5B DNA MER1_type 1 175 -3 724 129 8 8 chr6 15799766 15799784 -166615458 + (TTCC)n Simple_repeat Simple_repeat 1 18 -114 2596 158 10 2 chr6 15799784 15800183 -166615059 - MER57A LTR ERV1 0 403 2 724 129 8 8 chr6 15800183 15800296 -166614946 + (TTCC)n Simple_repeat Simple_repeat 17 132 0 22 35 0 0 chr6 15800563 15800592 -166614650 + AT_rich Low_complexity Low_complexity 1 29 0 1696 171 54 7 chr6 15801953 15802323 -166612919 + AluJo SINE Alu 1 384 0 2188 119 32 3 chr6 15803518 15803863 -166611379 + L1MA4 LINE L1 5941 6295 -5 2471 70 7 0 chr6 15804053 15804353 -166610889 + AluY SINE Alu 1 302 -9 2017 135 10 0 chr6 15804389 15804678 -166610564 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 15805748 15805770 -166609472 + AT_rich Low_complexity Low_complexity 1 22 0 305 296 34 0 chr6 15807197 15807285 -166607957 + MIR SINE MIR 36 126 -136 1834 169 0 7 chr6 15807511 15807807 -166607435 + AluJo SINE Alu 1 294 -18 631 263 142 12 chr6 15808287 15808527 -166606715 - MLT1J LTR MaLR 0 511 241 747 240 58 0 chr6 15808947 15809118 -166606124 + MLT1J LTR MaLR 28 208 -303 225 0 0 0 chr6 15809126 15809151 -166606091 + (CA)n Simple_repeat Simple_repeat 2 26 0 1543 182 19 4 chr6 15809153 15809422 -166605820 + AluJo SINE Alu 1 273 -39 616 141 16 8 chr6 15809429 15809550 -166605692 + GA-rich Low_complexity Low_complexity 3 124 0 731 258 20 63 chr6 15809550 15809802 -166605440 + MLT1J LTR MaLR 271 511 0 208 305 63 11 chr6 15810664 15810759 -166604483 + MIR SINE MIR 46 145 -63 2087 125 3 23 chr6 15810774 15811079 -166604163 + AluSx SINE Alu 1 299 -13 1662 170 6 50 chr6 15812014 15812337 -166602905 + AluJo SINE Alu 1 309 -3 3475 169 19 2 chr6 15812555 15813170 -166602072 + L1MB3 LINE L1 5551 6176 -7 586 175 70 0 chr6 15813450 15813564 -166601678 + L1ME3A LINE L1 6034 6155 -15 1651 145 34 0 chr6 15816979 15817248 -166597994 - MLT1B LTR MaLR 0 390 113 292 217 241 0 chr6 15817313 15817396 -166597846 - MIR3 SINE MIR -49 159 57 755 235 31 10 chr6 15817629 15817825 -166597417 - MLT1C LTR MaLR 0 467 268 1170 100 6 6 chr6 15817843 15818013 -166597229 + MER4A LTR ERV1 1 170 -494 2119 105 7 17 chr6 15818022 15818318 -166596924 + MER4A LTR ERV1 372 664 0 1412 166 25 17 chr6 15818318 15818559 -166596683 - MLT1C LTR MaLR -224 243 1 583 134 34 59 chr6 15819524 15819643 -166595599 + MLT1B LTR MaLR 5 120 -270 2477 170 70 19 chr6 15819838 15820368 -166594874 + MER89 LTR ERV1 3 559 0 393 22 0 0 chr6 15821546 15821592 -166593650 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 266 38 0 chr6 15822441 15822520 -166592722 + GA-rich Low_complexity Low_complexity 4 85 0 711 286 95 36 chr6 15823047 15823463 -166591779 - LTR16A LTR ERVL -8 449 1 553 228 102 45 chr6 15823774 15824020 -166591222 - L1ME4a LINE L1 -21 6100 5841 192 238 0 0 chr6 15824481 15824523 -166590719 + L3 LINE CR1 1530 1571 -6 454 168 32 80 chr6 15825843 15825905 -166589337 - LTR33 LTR ERVL 0 521 466 1878 128 40 17 chr6 15825905 15826202 -166589040 - AluSx SINE Alu -3 309 6 454 168 32 80 chr6 15826202 15826264 -166588978 - LTR33 LTR ERVL -55 466 403 478 262 87 17 chr6 15826337 15826509 -166588733 - LTR33 LTR ERVL -236 285 102 1127 203 266 18 chr6 15827014 15827408 -166587834 + MLT1C LTR MaLR 14 467 0 217 250 28 42 chr6 15828962 15829034 -166586208 + MIR SINE MIR 186 256 -6 214 159 68 0 chr6 15829603 15829647 -166585595 + GA-rich Low_complexity Low_complexity 4 50 0 2307 112 0 0 chr6 15830298 15830610 -166584632 + AluSx SINE Alu 1 312 0 827 180 7 0 chr6 15830612 15830751 -166584491 + AluJb SINE Alu 134 273 -39 1682 176 59 115 chr6 15831675 15832214 -166583028 + L1MD1 LINE L1 5722 6230 -12 220 281 0 0 chr6 15832216 15832273 -166582969 + GA-rich Low_complexity Low_complexity 2 58 0 1701 166 35 0 chr6 15833272 15833555 -166581687 - AluJb SINE Alu -19 293 1 27 0 0 0 chr6 15834463 15834490 -166580752 + AT_rich Low_complexity Low_complexity 1 27 0 710 158 105 18 chr6 15836384 15836555 -166578687 + MER53 DNA DNA 1 186 -3 2432 84 0 10 chr6 15836891 15837202 -166578040 + AluY SINE Alu 2 309 -2 2109 124 41 0 chr6 15838652 15838943 -166576299 - AluSq SINE Alu -10 303 1 280 220 0 10 chr6 15838954 15839054 -166576188 - L2 LINE L2 -1 3271 3177 2873 122 19 36 chr6 15839198 15839722 -166575520 - L1MA8 LINE L1 -3 6288 5774 1364 201 0 0 chr6 15839771 15840010 -166575232 - L1MA8 LINE L1 -498 5793 5555 1626 157 3 67 chr6 15840152 15840452 -166574790 - AluJo SINE Alu -31 281 1 233 278 127 24 chr6 15840457 15840583 -166574659 - MER113 DNA MER1_type? -378 143 5 304 169 121 48 chr6 15841103 15841186 -166574056 - MLT1C LTR MaLR -378 89 1 593 245 69 65 chr6 15841186 15841286 -166573956 - L2 LINE L2 -522 2792 2694 2364 52 24 10 chr6 15841286 15841577 -166573665 + AluY SINE Alu 1 295 -16 593 245 69 65 chr6 15841577 15841692 -166573550 - L2 LINE L2 -620 2694 2576 564 274 128 54 chr6 15842314 15842458 -166572784 - L2 LINE L2 0 3313 3181 2149 132 3 0 chr6 15842458 15842761 -166572481 + AluSq SINE Alu 1 304 -9 564 274 128 54 chr6 15842761 15843021 -166572221 - L2 LINE L2 -132 3181 2879 262 242 0 15 chr6 15843056 15843122 -166572120 - MER20B DNA MER1_type -623 160 96 725 269 63 16 chr6 15843241 15843291 -166571951 - L2 LINE L2 -474 2840 2794 1806 177 107 19 chr6 15843291 15843720 -166571522 - MLT1C LTR MaLR 0 467 1 725 269 63 16 chr6 15843720 15843922 -166571320 - L2 LINE L2 -520 2794 2576 207 0 0 0 chr6 15844528 15844551 -166570691 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1293 220 23 71 chr6 15845019 15845373 -166569869 + MER58B DNA MER1_type 4 340 -1 2346 113 0 3 chr6 15845439 15845750 -166569492 - AluSx SINE Alu -2 310 1 357 282 57 8 chr6 15845792 15845916 -166569326 - L2 LINE L2 -1 3271 3142 514 220 88 90 chr6 15846284 15846543 -166568699 + L1ME3A LINE L1 5682 5940 -249 733 199 50 50 chr6 15846729 15846910 -166568332 + AluJo SINE Alu 125 305 -7 643 116 0 0 chr6 15846920 15847015 -166568227 + L1MA3 LINE L1 6211 6305 0 377 243 32 54 chr6 15847070 15847255 -166567987 - L2 LINE L2 -580 2734 2554 1784 70 0 17 chr6 15847367 15847608 -166567634 + L1PA14 LINE L1 5925 6161 0 411 244 76 0 chr6 15849231 15849350 -166565892 - MIR3 SINE MIR -23 185 58 1284 132 57 44 chr6 15849641 15849868 -166565374 + Tigger2a DNA MER2_type 1 230 -204 1931 132 0 0 chr6 15849926 15850184 -166565058 - AluSx SINE Alu -54 258 1 1152 178 82 0 chr6 15850186 15850405 -166564837 + Tigger2a DNA MER2_type 198 434 0 1736 174 0 3 chr6 15850603 15850896 -166564346 + AluJo SINE Alu 1 292 -20 202 258 258 0 chr6 15850905 15850994 -166564248 + MER5A DNA MER1_type 69 180 -9 2198 126 0 0 chr6 15851138 15851432 -166563810 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr6 15852192 15852212 -166563030 + (A)n Simple_repeat Simple_repeat 1 20 0 249 108 0 0 chr6 15852429 15852466 -166562776 + (CA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr6 15852657 15852677 -166562565 + (A)n Simple_repeat Simple_repeat 1 20 0 2125 133 0 13 chr6 15853879 15854188 -166561054 - AluSx SINE Alu -7 305 1 33 56 0 0 chr6 15854659 15854713 -166560529 + AT_rich Low_complexity Low_complexity 1 54 0 2051 121 3 0 chr6 15854731 15855013 -166560229 + AluSx SINE Alu 15 297 -15 23 54 0 0 chr6 15855045 15855082 -166560160 + AT_rich Low_complexity Low_complexity 1 37 0 1706 181 15 75 chr6 15855356 15855502 -166559740 + MLT1A2 LTR MaLR 1 154 -220 2029 188 25 0 chr6 15855502 15855858 -166559384 + MLT1A1 LTR MaLR 1 365 0 1706 181 15 75 chr6 15855858 15856109 -166559133 + MLT1A2 LTR MaLR 154 374 0 195 42 0 0 chr6 15856228 15856252 -166558990 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 15857038 15857064 -166558178 + (A)n Simple_repeat Simple_repeat 1 26 0 192 97 0 0 chr6 15857225 15857256 -166557986 + (A)n Simple_repeat Simple_repeat 1 31 0 2502 56 7 3 chr6 15857522 15857824 -166557418 + AluSp SINE Alu 1 303 -10 796 278 100 70 chr6 15858616 15859803 -166555439 - L1ME LINE L1 -260 5904 4654 2490 66 0 3 chr6 15859803 15860104 -166555138 + AluSp SINE Alu 3 302 -11 796 278 100 70 chr6 15860104 15860412 -166554830 - L1ME LINE L1 -1510 4654 4357 2350 87 3 6 chr6 15860623 15860937 -166554305 + AluSp SINE Alu 1 310 -3 1358 237 55 23 chr6 15861732 15862116 -166553126 - MSTD LTR MaLR 0 396 1 2358 77 7 0 chr6 15862886 15863196 -166552046 + AluSp SINE Alu 1 312 -1 188 253 165 11 chr6 15865334 15865425 -166549817 - L2 LINE L2 -21 3251 3147 786 136 0 0 chr6 15865756 15865866 -166549376 + MSTC LTR MaLR 1 110 -318 739 151 8 0 chr6 15865856 15865975 -166549267 + MSTC LTR MaLR 309 428 0 * 22 0 0 0 chr6 15865995 15866017 -166549225 + AT_rich Low_complexity Low_complexity 1 22 0 315 208 57 28 chr6 15866591 15866697 -166548545 + L1 LINE L1 5172 5280 -866 239 318 12 12 chr6 15866706 15866791 -166548451 + L1ME3A LINE L1 5545 5629 -2179 348 351 79 10 chr6 15866859 15867061 -166548181 + L1ME3A LINE L1 5683 5898 -272 312 290 93 93 chr6 15867523 15867847 -166547395 - L2 LINE L2 -12 3260 2937 718 168 34 0 chr6 15868376 15868495 -166546747 + AluY SINE Alu 2 124 -187 4350 131 95 47 chr6 15868497 15869891 -166545351 - pTR5 LTR ERV1 0 2438 744 1357 70 0 30 chr6 15869891 15870090 -166545152 + AluY SINE Alu 119 311 0 820 184 63 23 chr6 15870140 15870314 -166544928 - MER5A DNA MER1_type -7 182 2 217 292 15 15 chr6 15870314 15870377 -166544865 - MIR SINE MIR -63 145 83 1401 170 49 35 chr6 15871769 15872057 -166543185 - AluJo SINE Alu -20 292 1 280 288 0 0 chr6 15873361 15873420 -166541822 + MIR SINE MIR 87 145 -63 556 172 123 0 chr6 15874135 15874257 -166540985 - MER103 DNA DNA -3 163 27 1774 166 3 10 chr6 15874272 15874586 -166540656 + AluJb SINE Alu 1 312 0 303 319 138 12 chr6 15874945 15875105 -166540137 - MIR3 SINE MIR -5 203 24 473 258 166 6 chr6 15875317 15875480 -166539762 + MIR3 SINE MIR 20 208 0 1399 204 15 55 chr6 15879304 15879668 -166535574 - MLT1A1 LTR MaLR -3 425 20 2510 163 0 45 chr6 15879673 15880048 -166535194 + Tigger2a DNA MER2_type 3 356 -2352 1566 166 6 54 chr6 15880048 15880361 -166534881 + AluJb SINE Alu 1 298 -14 2510 163 0 45 chr6 15880361 15880432 -166534810 + Tigger2a DNA MER2_type 356 429 -5 492 255 31 31 chr6 15880601 15880762 -166534480 + MIR3 SINE MIR 34 194 -14 1166 143 0 11 chr6 15880909 15881098 -166534144 + AluJo SINE Alu 1 187 -125 245 27 0 0 chr6 15881099 15881136 -166534106 + Alu SINE Alu 130 166 0 242 222 25 74 chr6 15882144 15882225 -166533017 - MIR SINE MIR -78 184 108 233 276 0 46 chr6 15883729 15883816 -166531426 + L2 LINE L2 3230 3312 -1 429 218 7 14 chr6 15883854 15883996 -166531246 + GA-rich Low_complexity Low_complexity 4 144 0 264 59 0 0 chr6 15884910 15884944 -166530298 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 599 135 0 9 chr6 15885034 15885145 -166530097 + (GGAA)n Simple_repeat Simple_repeat 4 113 0 660 291 14 19 chr6 15885150 15885360 -166529882 - MIR SINE MIR -14 248 40 846 246 44 26 chr6 15885750 15885978 -166529264 + MLT1J LTR MaLR 28 259 -252 2133 160 3 8 chr6 15886321 15886689 -166528553 + MER47A DNA MER2_type 1 366 0 2033 147 0 0 chr6 15887554 15887866 -166527376 - AluSx SINE Alu 0 312 1 1793 124 40 40 chr6 15888939 15889238 -166526004 - AluSg SINE Alu -11 299 1 1968 98 4 7 chr6 15891108 15891382 -166523860 + AluSc SINE Alu 1 273 -36 28 29 0 0 chr6 15891382 15891417 -166523825 + AT_rich Low_complexity Low_complexity 1 35 0 262 298 96 10 chr6 15891891 15891995 -166523247 - L2 LINE L2 -6 3266 3154 334 354 53 0 chr6 15892037 15892150 -166523092 + L2 LINE L2 3150 3268 -4 248 0 0 30 chr6 15893000 15893033 -166522209 + (CA)n Simple_repeat Simple_repeat 2 33 0 2178 190 70 0 chr6 15893789 15894220 -166521022 - LOR1b LTR ERV1 0 461 1 2967 239 17 2 chr6 15894498 15895139 -166520103 + MER82 DNA MER2_type 2 652 -1 281 102 8 76 chr6 15895295 15895413 -166519829 + (TA)n Simple_repeat Simple_repeat 1 110 0 1351 138 0 5 chr6 15895416 15895626 -166519616 - AluJb SINE Alu -6 306 98 22 35 0 0 chr6 15895781 15895810 -166519432 + AT_rich Low_complexity Low_complexity 1 29 0 663 158 72 13 chr6 15896272 15896424 -166518818 - MER58 DNA MER1_type -1 2419 2259 1689 169 3 13 chr6 15896426 15896727 -166518515 + AluSq SINE Alu 1 298 -15 359 213 11 75 chr6 15896730 15896824 -166518418 - MER58 DNA MER1_type -2329 91 4 729 203 172 0 chr6 15896839 15897002 -166518240 + MER3 DNA MER1_type 1 191 -18 720 210 40 158 chr6 15897216 15897280 -166517962 + MER119 DNA MER1_type 8 78 -505 1600 183 30 3 chr6 15897280 15897575 -166517667 - AluJb SINE Alu -7 305 3 720 210 40 158 chr6 15897575 15897838 -166517404 + MER119 DNA MER1_type 78 296 -287 1698 103 64 29 chr6 15898117 15898423 -166516819 - AluJo SINE Alu 0 312 2 240 111 0 0 chr6 15899008 15899044 -166516198 + (T)n Simple_repeat Simple_repeat 1 36 0 258 314 114 0 chr6 15899400 15899505 -166515737 - L2 LINE L2 -26 3287 3171 486 368 36 10 chr6 15899918 15900111 -166515131 + L2 LINE L2 2983 3180 -92 802 140 6 28 chr6 15900125 15900304 -166514938 + GA-rich Low_complexity Low_complexity 2 176 0 1802 197 117 5 chr6 15900527 15900939 -166514303 - Charlie4a DNA MER1_type -13 495 38 369 309 69 37 chr6 15900977 15901165 -166514077 - L2 LINE L2 -1407 1907 1714 204 238 83 36 chr6 15902427 15902511 -166512731 - MIR SINE MIR -87 121 34 1404 157 92 0 chr6 15903709 15903971 -166511271 + MER7A DNA MER2_type 1 284 -62 851 159 0 132 chr6 15904042 15904231 -166511011 + Tigger3(Golem) DNA MER2_type 2866 3029 0 2231 108 0 0 chr6 15906047 15906352 -166508890 - AluSq SINE Alu -6 307 3 240 341 55 59 chr6 15906674 15906800 -166508442 + MIR SINE MIR 34 160 -102 2103 136 0 0 chr6 15906800 15907110 -166508132 + AluSx SINE Alu 1 310 -2 240 341 55 59 chr6 15907110 15907203 -166508039 + MIR SINE MIR 160 252 -10 918 193 0 0 chr6 15907232 15907398 -166507844 + FRAM SINE Alu 1 165 -11 577 249 170 61 chr6 15907630 15908125 -166507117 + MLT1H LTR MaLR 1 549 0 360 297 39 8 chr6 15908539 15908667 -166506575 - MIR SINE MIR 0 262 131 * 1067 283 215 8 chr6 15908648 15909137 -166506105 - L2 LINE L2 0 3313 2927 1905 134 3 13 chr6 15909137 15909450 -166505792 + AluJb SINE Alu 1 310 -2 1067 283 215 8 chr6 15909450 15909648 -166505594 - L2 LINE L2 -386 2927 2471 378 309 79 14 chr6 15909667 15909806 -166505436 - MIR SINE MIR -113 149 2 237 180 40 0 chr6 15910603 15910653 -166504589 + CT-rich Low_complexity Low_complexity 1 52 0 743 201 5 79 chr6 15911220 15911409 -166503833 + MIR SINE MIR 61 235 -27 1672 159 43 40 chr6 15911414 15911715 -166503527 - AluJo SINE Alu -10 302 1 21 57 0 0 chr6 15911715 15911750 -166503492 + AT_rich Low_complexity Low_complexity 1 35 0 1278 207 0 7 chr6 15912005 15912275 -166502967 + AluSc SINE Alu 12 279 -30 2109 125 57 20 chr6 15913495 15913846 -166501396 - THE1B LTR MaLR 0 364 1 192 152 0 0 chr6 15914931 15914964 -166500278 + CT-rich Low_complexity Low_complexity 3 35 0 2141 120 0 0 chr6 15915079 15915383 -166499859 + AluSx SINE Alu 1 304 0 753 195 32 37 chr6 15916469 15916659 -166498583 - MER53 DNA DNA 0 189 1 249 259 47 12 chr6 15916874 15916959 -166498283 + GA-rich Low_complexity Low_complexity 1 88 0 219 69 0 0 chr6 15919022 15919051 -166496191 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr6 15919258 15919279 -166495963 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 69 63 chr6 15919642 15919817 -166495425 - MIR SINE MIR -67 195 20 975 169 0 0 chr6 15921181 15921369 -166493873 - AluJo/FRAM SINE Alu 0 321 134 2179 101 35 0 chr6 15921369 15921655 -166493587 - AluSx SINE Alu -6 306 11 845 339 97 21 chr6 15922219 15923178 -166492064 - L2 LINE L2 -576 2738 1707 235 281 88 9 chr6 15923353 15923467 -166491775 - MIR3 SINE MIR -13 195 73 25 0 0 0 chr6 15924239 15924264 -166490978 + AT_rich Low_complexity Low_complexity 1 25 0 503 211 109 0 chr6 15926067 15926130 -166489112 - MER5A DNA MER1_type 0 189 134 2600 38 3 25 chr6 15926130 15926444 -166488798 + AluY SINE Alu 1 307 -4 503 211 109 0 chr6 15926444 15926527 -166488715 - MER5A DNA MER1_type -55 134 27 245 29 29 0 chr6 15926648 15926682 -166488560 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 458 248 15 14 chr6 15927067 15927206 -166488036 - L1ME3 LINE L1 0 6170 6031 1578 109 0 35 chr6 15927210 15927440 -166487802 - AluSq SINE Alu -9 304 83 2053 128 0 7 chr6 15927440 15927722 -166487520 - AluSx SINE Alu -28 284 5 461 285 52 65 chr6 15927737 15928142 -166487100 - L1MB8 LINE L1 -226 5944 5542 401 282 32 32 chr6 15928257 15928381 -166486861 - L2 LINE L2 0 3313 3190 1758 162 23 10 chr6 15928495 15928620 -166486622 + AluJb SINE Alu 5 127 -185 2340 97 3 3 chr6 15928620 15928919 -166486323 + AluSq SINE Alu 1 299 -14 1758 162 23 10 chr6 15928919 15929096 -166486146 + AluJb SINE Alu 127 311 -1 2590 43 7 3 chr6 15929656 15929957 -166485285 + AluY SINE Alu 1 302 -9 4222 179 13 55 chr6 15930609 15930828 -166484414 - Charlie1a DNA MER1_type -1306 1455 1228 2202 99 0 0 chr6 15930828 15931137 -166484105 + AluSx SINE Alu 1 309 0 4222 179 13 55 chr6 15931137 15931911 -166483331 - Charlie1a DNA MER1_type -1533 1228 503 1146 206 56 103 chr6 15931950 15932417 -166482825 + MLT1C LTR MaLR 23 467 0 * 2051 228 16 46 chr6 15932417 15932631 -166482611 - Charlie1a DNA MER1_type -2259 502 283 2421 69 16 0 chr6 15932631 15932934 -166482308 + AluSp SINE Alu 1 308 -5 2051 228 16 46 chr6 15932934 15933235 -166482007 - Charlie1a DNA MER1_type -2478 283 3 199 342 71 26 chr6 15933572 15933727 -166481515 + L2 LINE L2 2902 3063 -209 2232 127 0 0 chr6 15934199 15934507 -166480735 + AluSx SINE Alu 1 308 -4 346 301 62 20 chr6 15934755 15934901 -166480341 + L2 LINE L2 3117 3268 -4 476 92 46 58 chr6 15935751 15935838 -166479404 - MER53 DNA DNA -2 187 102 513 0 0 0 chr6 15936082 15936139 -166479103 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2034 111 30 0 chr6 15936141 15936412 -166478830 - AluSg SINE Alu -31 279 1 2528 54 0 0 chr6 15937329 15937625 -166477617 + AluY SINE Alu 1 296 -15 2168 128 0 0 chr6 15937695 15937991 -166477251 + AluSx SINE Alu 1 296 -16 610 283 61 67 chr6 15937995 15938400 -166476842 - MLT1I LTR MaLR 0 409 5 2167 104 3 10 chr6 15938441 15938748 -166476494 + AluSc SINE Alu 1 305 -4 317 243 37 19 chr6 15938853 15938960 -166476282 + L1ME4a LINE L1 6012 6120 -1 195 129 0 0 chr6 15939901 15939932 -166475310 + (A)n Simple_repeat Simple_repeat 1 31 0 2178 111 0 20 chr6 15939934 15940240 -166475002 + AluSg SINE Alu 1 300 -10 2334 88 3 10 chr6 15941522 15941828 -166473414 - AluSp SINE Alu -8 305 2 2027 156 15 38 chr6 15941967 15942269 -166472973 - MLT1B LTR MaLR 0 390 98 1859 135 43 0 chr6 15942269 15942551 -166472691 + AluSx SINE Alu 14 307 -5 2027 156 15 38 chr6 15942551 15942646 -166472596 - MLT1B LTR MaLR -292 98 2 2148 90 31 3 chr6 15944025 15944315 -166470927 + AluSg SINE Alu 1 298 -12 204 67 0 0 chr6 15944315 15944345 -166470897 + (TA)n Simple_repeat Simple_repeat 2 31 0 751 284 43 16 chr6 15944739 15944993 -166470249 + MIR SINE MIR 2 262 0 212 270 32 0 chr6 15945035 15945098 -166470144 - MIR SINE MIR -2 260 196 31 0 0 0 chr6 15945107 15945138 -166470104 + AT_rich Low_complexity Low_complexity 1 31 0 378 243 224 7 chr6 15945643 15945795 -166469447 - MIR SINE MIR -71 191 7 895 200 6 6 chr6 15945936 15946111 -166469131 + FAM SINE Alu 1 49 0 1475 263 77 29 chr6 15946126 15946852 -166468390 - L1MC4a LINE L1 -334 5787 5390 2154 109 27 3 chr6 15947553 15947846 -166467396 + AluSq SINE Alu 1 300 -13 351 302 78 15 chr6 15947969 15948159 -166467083 - L1ME LINE L1 -312 5809 5632 183 80 0 0 chr6 15948159 15948184 -166467058 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1776 156 14 18 chr6 15948188 15948470 -166466772 - AluJo SINE Alu -31 281 1 313 291 127 8 chr6 15948508 15948642 -166466600 - L2 LINE L2 0 3313 3164 279 301 121 60 chr6 15948807 15949205 -166466037 - L2 LINE L2 -351 2963 2502 2162 112 3 0 chr6 15949205 15949501 -166465741 - AluSq SINE Alu -15 298 2 279 301 121 60 chr6 15949501 15949803 -166465439 - L2 LINE L2 -812 2502 2220 272 206 32 16 chr6 15951092 15951155 -166464087 - L1ME4a LINE L1 -90 6031 5968 2383 103 7 0 chr6 15952068 15952378 -166462864 + AluSx SINE Alu 1 312 0 274 250 15 0 chr6 15952496 15952564 -166462678 - MER5B DNA MER1_type 0 178 110 203 149 43 21 chr6 15952575 15952622 -166462620 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 23 0 0 0 chr6 15952949 15952972 -166462270 + AT_rich Low_complexity Low_complexity 1 23 0 2293 106 3 0 chr6 15954036 15954337 -166460905 + AluSp SINE Alu 1 302 -11 208 342 176 5 chr6 15954665 15955080 -166460162 + L2 LINE L2 2013 2498 -816 330 297 51 61 chr6 15955403 15955797 -166459445 + L2 LINE L2 2579 2968 -346 2475 125 188 10 chr6 15955980 15956460 -166458782 + MER34B LTR ERV1 1 565 0 1512 201 43 59 chr6 15957993 15958522 -166456720 - MER39 LTR ERV1 -2 705 1 1098 98 75 61 chr6 15959140 15959354 -166455888 - MER34B LTR ERV1 0 565 349 1429 210 28 10 chr6 15959355 15959646 -166455596 - AluJo SINE Alu -13 299 4 758 176 0 0 chr6 15959651 15959776 -166455466 - FLAM_C SINE Alu -12 131 7 2074 167 14 3 chr6 15959784 15960131 -166455111 - MER34B LTR ERV1 -214 351 1 1652 179 42 0 chr6 15960805 15961090 -166454152 - AluJb SINE Alu -15 297 1 189 0 0 0 chr6 15962398 15962419 -166452823 + (TC)n Simple_repeat Simple_repeat 2 22 0 959 131 7 0 chr6 15962423 15962560 -166452682 - FLAM_C SINE Alu -5 138 1 254 132 19 0 chr6 15962560 15962613 -166452629 + CT-rich Low_complexity Low_complexity 1 54 0 364 200 124 65 chr6 15963932 15964117 -166451125 - MER34C LTR ERV1 -5 580 385 2202 94 33 0 chr6 15964956 15965255 -166449987 + AluSx SINE Alu 1 309 -3 950 165 33 0 chr6 15965546 15965728 -166449514 - MER53 DNA DNA -1 188 1 208 399 74 31 chr6 15968655 15968818 -166446424 + L2 LINE L2 3102 3271 -1 2123 102 7 0 chr6 15969306 15969609 -166445633 + AluSq SINE Alu 2 306 -7 2144 116 10 0 chr6 15970851 15971161 -166444081 + AluSq SINE Alu 1 313 0 1574 98 45 29 chr6 15972273 15972517 -166442725 - AluSx SINE Alu -17 295 48 488 219 10 0 chr6 15972759 15972855 -166442387 + MER5A DNA MER1_type 10 106 -83 478 326 32 11 chr6 15973005 15973195 -166442047 - MIR SINE MIR -55 207 14 805 161 0 29 chr6 15973582 15973719 -166441523 - FLAM_C SINE Alu 0 133 1 181 288 207 27 chr6 15974080 15974191 -166441051 + L3 LINE CR1 340 470 -1107 578 159 251 25 chr6 15974758 15974921 -166440321 + MER63C DNA MER1_type 2 201 -729 719 121 40 87 chr6 15974921 15975070 -166440172 - FLAM_C SINE Alu 0 143 2 2229 202 40 68 chr6 15975072 15975403 -166439839 + MER63C DNA MER1_type 192 530 -530 908 228 27 14 chr6 15975403 15975622 -166439620 - MER58A DNA MER1_type -1 223 2 2229 202 40 68 chr6 15975622 15975786 -166439456 + MER63C DNA MER1_type 530 697 -363 2600 159 19 21 chr6 15975786 15976251 -166438991 - MLT1C LTR MaLR -1 466 3 2229 202 40 68 chr6 15976251 15976311 -166438931 + MER63C DNA MER1_type 697 757 -303 1918 57 4 12 chr6 15976311 15976581 -166438661 + AluY SINE Alu 39 306 0 2114 123 3 0 chr6 15976591 15976899 -166438343 + AluSg SINE Alu 1 309 -1 2229 202 40 68 chr6 15976899 15976996 -166438246 + MER63C DNA MER1_type 766 840 -90 1684 161 0 57 chr6 15977037 15977353 -166437889 - AluSx SINE Alu -12 300 3 455 212 121 0 chr6 15977355 15977454 -166437788 + MER63C DNA MER1_type 820 930 0 2929 68 3 0 chr6 15977503 15977857 -166437385 + THE1A LTR MaLR 1 355 0 680 285 28 64 chr6 15978675 15979088 -166436154 - MLT1J1 LTR MaLR 0 446 71 2168 202 29 2 chr6 15979456 15979871 -166435371 - MSTB LTR MaLR 0 426 1 2156 105 3 7 chr6 15980293 15980597 -166434645 + AluSq SINE Alu 1 303 -10 2206 80 3 7 chr6 15981153 15981452 -166433790 + AluY SINE Alu 1 298 -13 280 242 117 40 chr6 15982269 15982569 -166432673 + MLT1G1 LTR MaLR 3 351 -204 289 262 74 8 chr6 15982569 15982691 -166432551 + MLT1G1 LTR MaLR 462 591 -4 208 339 57 24 chr6 15982720 15982844 -166432398 + MIR SINE MIR 17 144 -118 189 107 0 0 chr6 15982971 15982999 -166432243 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr6 15983022 15983044 -166432198 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2165 97 3 0 chr6 15983047 15983335 -166431907 - AluSp SINE Alu -24 289 1 370 235 137 78 chr6 15983422 15983626 -166431616 + MLT1K LTR MaLR 369 584 -4 211 263 18 0 chr6 15984167 15984224 -166431018 + MIR SINE MIR 95 152 -56 2145 113 0 3 chr6 15984224 15984526 -166430716 + AluSq SINE Alu 1 301 -12 2212 170 22 3 chr6 15984600 15984958 -166430284 + MLT1A1 LTR MaLR 1 365 0 207 246 185 0 chr6 15985119 15985184 -166430058 - MIR SINE MIR -12 250 174 8461 125 72 69 chr6 15985224 15986511 -166428731 + L1PA10 LINE L1 4026 5329 -839 2071 104 3 10 chr6 15986511 15986810 -166428432 + AluSx SINE Alu 1 297 -15 8461 125 72 69 chr6 15986810 15987647 -166427595 + L1PA10 LINE L1 5329 6163 -5 619 264 81 30 chr6 15987868 15988266 -166426976 + L1ME3A LINE L1 5727 6169 -1 2282 66 0 53 chr6 15988529 15988847 -166426395 - AluY SINE Alu -10 301 1 660 217 142 9 chr6 15989076 15989288 -166425954 + MIR SINE MIR 5 244 -18 435 324 35 12 chr6 15989552 15989722 -166425520 - MIR SINE MIR -88 174 1 620 215 30 0 chr6 15990119 15990254 -166424988 - MER77 LTR ERV1 0 605 467 2126 92 7 26 chr6 15990258 15990561 -166424681 + AluSq SINE Alu 1 297 -16 267 217 0 0 chr6 15990561 15990621 -166424621 + GA-rich Low_complexity Low_complexity 1 60 0 1011 180 14 104 chr6 15990621 15990899 -166424343 - LTR37B LTR ERV1 -159 309 57 1397 169 33 113 chr6 15990923 15991320 -166423922 + MLT1A1 LTR MaLR 1 365 0 233 252 98 70 chr6 15992079 15992222 -166423020 - MER5A DNA MER1_type -24 165 19 860 225 107 0 chr6 15992492 15992670 -166422572 + MER58A DNA MER1_type 2 198 -26 1487 256 43 34 chr6 15992737 15992899 -166422343 + L1ME1 LINE L1 5259 5418 -748 2124 116 3 28 chr6 15992899 15993219 -166422023 + AluSx SINE Alu 1 312 0 1487 256 43 34 chr6 15993219 15993350 -166421892 + L1ME1 LINE L1 5418 5546 -620 2171 109 0 0 chr6 15993350 15993653 -166421589 - AluSx SINE Alu -9 303 1 1487 256 43 34 chr6 15993653 15993804 -166421438 + L1ME1 LINE L1 5546 5708 -458 929 112 0 8 chr6 15993825 15993959 -166421283 - FLAM_C SINE Alu -6 137 5 1692 187 111 28 chr6 15993964 15994256 -166420986 + L1ME1 LINE L1 5702 6041 -125 2086 126 7 0 chr6 15994256 15994557 -166420685 + AluSx SINE Alu 1 303 -9 1692 187 111 28 chr6 15994557 15994687 -166420555 + L1ME1 LINE L1 6041 6159 -7 1246 213 22 0 chr6 15994699 15994976 -166420266 + L1MC4 LINE L1 6935 7217 -825 1090 184 25 72 chr6 15994981 15995259 -166419983 + AluJo SINE Alu 1 265 -47 964 216 51 0 chr6 15995273 15995513 -166419729 + L1MC4a LINE L1 7127 7554 -441 1989 125 0 0 chr6 15995526 15995807 -166419435 + AluSx SINE Alu 1 281 -31 2406 97 132 5 chr6 15996907 15997287 -166417955 + MSTA LTR MaLR 1 428 0 3221 198 80 39 chr6 15999522 16000651 -166414591 + L1M3 LINE L1 4366 5555 -613 1144 157 44 39 chr6 16000651 16000711 -166414531 + AluJb SINE Alu 83 141 -171 2260 99 0 0 chr6 16000711 16001014 -166414228 + AluSq SINE Alu 1 303 -10 1144 157 44 39 chr6 16001014 16001182 -166414060 + AluJb SINE Alu 141 312 0 3735 149 135 34 chr6 16001523 16002869 -166412373 + pTR5 LTR ERV1 741 2606 0 2115 100 3 7 chr6 16003735 16004035 -166411207 + AluSq SINE Alu 1 299 -14 737 176 0 23 chr6 16004915 16005046 -166410196 - FLAM_C SINE Alu -3 130 3 2090 71 41 20 chr6 16005277 16005572 -166409670 + AluY SINE Alu 1 301 -10 2161 106 0 3 chr6 16005593 16005894 -166409348 + AluSx SINE Alu 1 300 -12 2052 121 3 0 chr6 16006450 16006747 -166408495 + AluSx SINE Alu 1 298 -14 519 274 92 24 chr6 16007839 16008003 -166407239 - MER69A DNA AcHobo -2 175 1 321 356 75 6 chr6 16008487 16008661 -166406581 + MIR3 SINE MIR 7 192 -16 304 219 12 37 chr6 16009675 16009757 -166405485 + MER116 DNA Mariner 1 80 0 1144 161 18 40 chr6 16009889 16010113 -166405129 + MER20 DNA MER1_type 1 219 0 231 200 0 0 chr6 16012001 16012041 -166403201 - MIR SINE MIR -101 161 122 2148 104 7 0 chr6 16012168 16012477 -166402765 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr6 16012582 16012610 -166402632 + (TG)n Simple_repeat Simple_repeat 1 28 0 2108 103 33 0 chr6 16012712 16013015 -166402227 + AluSx SINE Alu 1 313 0 2215 72 20 0 chr6 16013389 16013682 -166401560 + AluY SINE Alu 1 299 -12 2268 87 0 3 chr6 16014020 16014320 -166400922 + AluSq SINE Alu 1 299 -14 1681 135 7 4 chr6 16014430 16014728 -166400514 + AluJo SINE Alu 11 309 0 801 214 96 123 chr6 16014864 16015304 -166399938 + MER113 DNA MER1_type? 20 447 -74 2310 82 0 0 chr6 16015555 16015859 -166399383 - AluY SINE Alu -7 304 1 2211 113 0 0 chr6 16016611 16016920 -166398322 - AluSx SINE Alu -1 311 3 498 201 73 62 chr6 16017030 16017209 -166398033 - MER34B LTR ERV1 0 565 385 2212 105 0 0 chr6 16017220 16017516 -166397726 + AluSx SINE Alu 1 296 -16 759 203 0 0 chr6 16017779 16017907 -166397335 + FLAM_C SINE Alu 1 128 -5 911 127 0 15 chr6 16017971 16018105 -166397137 - FLAM_C SINE Alu -1 132 1 236 200 109 0 chr6 16018131 16018186 -166397056 - MER34C LTR ERV1 -485 100 40 255 61 0 0 chr6 16018504 16018537 -166396705 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1880 129 4 0 chr6 16019335 16019638 -166395604 - AluSx SINE Alu 0 304 1 22 35 0 0 chr6 16019785 16019814 -166395428 + AT_rich Low_complexity Low_complexity 1 29 0 1212 249 90 21 chr6 16020495 16020929 -166394313 + MER110A LTR ERV1 1 464 -4 998 99 0 0 chr6 16021055 16021186 -166394056 + AluSq/x SINE Alu 1 131 -182 1981 128 10 0 chr6 16021193 16021319 -166393923 + AluSx SINE Alu 1 124 -188 279 0 0 0 chr6 16021319 16021350 -166393892 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1981 128 10 0 chr6 16021350 16021519 -166393723 + AluSx SINE Alu 124 299 -13 236 193 0 18 chr6 16021728 16021785 -166393457 - L1MA5 LINE L1 -2 6298 6243 * 922 140 9 9 chr6 16021762 16021933 -166393309 - L1MA5 LINE L1 -10 6302 6128 1448 184 44 0 chr6 16021935 16022207 -166393035 + AluJo SINE Alu 11 294 -18 5392 152 17 32 chr6 16022218 16023253 -166391989 - L1MA5 LINE L1 -152 6148 5146 2273 83 7 0 chr6 16023253 16023554 -166391688 - AluSc SINE Alu -6 303 1 5392 152 17 32 chr6 16023554 16023688 -166391554 - L1MA5 LINE L1 -1154 5146 5012 981 152 21 11 chr6 16023688 16023879 -166391363 - L1MC2 LINE L1 -15 6329 6137 2644 149 97 166 chr6 16023879 16023958 -166391284 - L1MC3 LINE L1 -191 7594 7511 381 43 0 0 chr6 16023958 16024005 -166391237 + (CA)n Simple_repeat Simple_repeat 2 48 0 1869 142 0 29 chr6 16024014 16024324 -166390918 - AluJb SINE Alu -10 302 2 2644 149 97 166 chr6 16024324 16024673 -166390569 - L1MC3 LINE L1 -282 7503 7131 267 267 0 13 chr6 16024673 16024748 -166390494 - MLT1F1 LTR MaLR -453 114 41 2644 149 97 166 chr6 16024748 16025132 -166390110 - L1MC3 LINE L1 -654 7131 6759 2034 102 7 0 chr6 16025338 16025623 -166389619 - AluSp SINE Alu -15 298 12 28 29 0 0 chr6 16025878 16025913 -166389329 + AT_rich Low_complexity Low_complexity 1 35 0 1562 159 43 40 chr6 16025913 16026214 -166389028 + AluJo SINE Alu 1 302 -10 970 219 4 62 chr6 16026219 16026461 -166388781 - MIR SINE MIR -27 235 8 2409 44 14 3 chr6 16026587 16026884 -166388358 - AluY SINE Alu -11 300 1 1665 162 10 0 chr6 16027341 16027637 -166387605 + AluSx SINE Alu 1 299 -13 1827 140 3 3 chr6 16028336 16028622 -166386620 + AluJb SINE Alu 1 286 -26 2097 93 17 0 chr6 16028627 16028917 -166386325 - AluSg SINE Alu -15 295 1 200 152 0 0 chr6 16029360 16029393 -166385849 - MIR SINE MIR -63 145 113 465 193 111 117 chr6 16029663 16029834 -166385408 - MER5A DNA MER1_type -14 175 6 2172 147 18 33 chr6 16029923 16030319 -166384923 + MLT1B LTR MaLR 1 390 0 238 253 207 23 chr6 16030363 16030450 -166384792 + MIR SINE MIR 33 135 -73 2159 108 0 0 chr6 16030559 16030855 -166384387 + AluSx SINE Alu 1 296 -16 390 347 103 35 chr6 16030893 16031233 -166384009 + L1ME LINE L1 61 423 -5647 2568 100 34 78 chr6 16031342 16031439 -166383803 + MSTC LTR MaLR 1 101 -327 1901 151 0 3 chr6 16031439 16031738 -166383504 + AluSx SINE Alu 1 298 -14 2568 100 34 78 chr6 16031738 16032088 -166383154 + MSTC LTR MaLR 101 428 0 1707 205 81 10 chr6 16032258 16032667 -166382575 + Charlie4a DNA MER1_type 17 454 -54 2035 120 17 0 chr6 16032669 16032970 -166382272 - AluSx SINE Alu -6 306 1 4888 83 8 67 chr6 16033475 16033660 -166381582 + LTR8 LTR ERV1 1 195 -496 1872 132 0 0 chr6 16033660 16033932 -166381310 + AluSx SINE Alu 28 299 -13 4888 83 8 67 chr6 16033932 16034480 -166380762 + LTR8 LTR ERV1 195 691 0 237 74 37 19 chr6 16034675 16034729 -166380513 + (TTATA)n Simple_repeat Simple_repeat 1 55 0 197 298 39 96 chr6 16034805 16034909 -166380333 + MIR3 SINE MIR 96 193 -15 1591 137 0 12 chr6 16035003 16035294 -166379948 - AluSx SINE Alu 0 331 44 1542 93 9 9 chr6 16035312 16035537 -166379705 - AluSc SINE Alu -2 307 83 1876 132 4 4 chr6 16036178 16036459 -166378783 - AluSp SINE Alu -32 281 1 801 121 7 54 chr6 16036821 16036970 -166378272 + FLAM_C SINE Alu 2 143 0 971 149 54 6 chr6 16037433 16037601 -166377641 - AluSg/x SINE Alu -3 307 132 2294 92 3 0 chr6 16037601 16037905 -166377337 - AluSp SINE Alu -7 306 2 183 156 0 0 chr6 16038208 16038240 -166377002 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1106 153 6 0 chr6 16038242 16038419 -166376823 - AluJo SINE Alu -30 282 105 244 154 39 58 chr6 16038422 16038474 -166376768 + HSMAR1 DNA Mariner 1 51 -1236 672 147 0 0 chr6 16038480 16038582 -166376660 - AluJo SINE Alu -210 102 1 2322 169 4 50 chr6 16038649 16039007 -166376235 + L1M3 LINE L1 5369 5703 -480 2111 107 7 0 chr6 16039007 16039307 -166375935 + AluSq SINE Alu 1 302 -11 2322 169 4 50 chr6 16039307 16039405 -166375837 + L1M3 LINE L1 5703 5804 -379 2051 102 6 22 chr6 16039420 16039735 -166375507 + AluY SINE Alu 1 310 -1 488 241 106 0 chr6 16039977 16040118 -166375124 + MER3 DNA MER1_type 5 160 -49 1004 144 11 17 chr6 16040118 16040299 -166374943 - AluSg/x SINE Alu -3 309 130 276 171 0 0 chr6 16040701 16040742 -166374500 - FLAM_A SINE Alu -68 64 24 2079 104 3 3 chr6 16040753 16041042 -166374200 - AluSx SINE Alu -23 289 1 610 39 0 0 chr6 16041204 16041281 -166373961 - AluS SINE Alu -234 78 2 1690 120 34 8 chr6 16041781 16042047 -166373195 - AluSx SINE Alu 0 312 40 2120 97 3 3 chr6 16042057 16042356 -166372886 - AluY SINE Alu -12 299 1 1619 115 11 65 chr6 16042562 16042840 -166372402 + LTR48B LTR ERV1 1 263 -381 249 25 0 0 chr6 16042829 16042869 -166372373 + Alu SINE Alu 262 301 0 * 907 120 8 0 chr6 16042907 16043032 -166372210 - FLAM_C SINE Alu -3 130 5 2552 49 0 0 chr6 16043185 16043490 -166371752 + AluY SINE Alu 1 305 -6 2035 62 12 4 chr6 16043490 16043748 -166371494 + AluY SINE Alu 38 297 -14 227 224 0 0 chr6 16044046 16044095 -166371147 + L2 LINE L2 3224 3272 0 413 278 77 35 chr6 16045567 16045736 -166369506 + MER5A DNA MER1_type 7 182 -7 717 136 0 0 chr6 16045743 16045846 -166369396 + AluJo SINE Alu 2 104 -208 581 155 25 1 chr6 16045846 16045962 -166369280 + MER41A LTR ERV1 3 127 -427 23 0 0 0 chr6 16046043 16046066 -166369176 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr6 16046082 16046121 -166369121 + AT_rich Low_complexity Low_complexity 1 39 0 2967 149 2 4 chr6 16046124 16046606 -166368636 + MER41B LTR ERV1 148 628 -7 812 212 20 10 chr6 16046606 16046809 -166368433 + AluJo SINE Alu 93 297 -15 265 222 111 71 chr6 16046974 16047073 -166368169 - MER5A DNA MER1_type -78 111 9 309 280 25 42 chr6 16047487 16047605 -166367637 - L2 LINE L2 -15 3257 3142 2316 87 7 0 chr6 16047964 16048273 -166366969 + AluSq SINE Alu 1 311 -2 24 0 0 0 chr6 16048308 16048332 -166366910 + AT_rich Low_complexity Low_complexity 1 24 0 1374 229 41 85 chr6 16048342 16048909 -166366333 - MER34 LTR ERV1 0 542 1 2166 227 66 43 chr6 16049261 16049834 -166365408 + Zaphod DNA AcHobo 185 779 -3252 2053 114 13 0 chr6 16049834 16050141 -166365101 - AluSx SINE Alu -1 311 1 2166 227 66 43 chr6 16050141 16050282 -166364960 + Zaphod DNA AcHobo 779 915 -3116 1538 150 24 0 chr6 16050282 16050528 -166364714 - Tigger2 DNA MER2_type 0 2718 2467 1476 74 0 15 chr6 16050587 16050790 -166364452 - AluY SINE Alu -109 202 3 280 237 26 0 chr6 16050899 16050975 -166364267 + GA-rich Low_complexity Low_complexity 1 78 0 1065 82 0 0 chr6 16051210 16051344 -166363898 + AluSq/x SINE Alu 1 134 -179 2009 99 10 7 chr6 16051346 16051640 -166363602 + AluSx SINE Alu 1 295 -17 289 293 196 0 chr6 16052028 16052161 -166363081 + MIR3 SINE MIR 41 199 -9 294 209 38 67 chr6 16052208 16052313 -166362929 + LTR48B LTR ERV1 1 102 -542 811 205 97 62 chr6 16052313 16052572 -166362670 + MER39 LTR ERV1 325 592 -115 828 138 0 22 chr6 16052572 16052710 -166362532 - FLAM_C SINE Alu -6 137 3 364 202 57 57 chr6 16052711 16052835 -166362407 + MER39 LTR ERV1 417 705 -2 2215 116 0 0 chr6 16053524 16053835 -166361407 + AluSq SINE Alu 1 311 -2 1919 113 55 0 chr6 16054060 16054353 -166360889 + AluSx SINE Alu 1 309 -3 1846 131 44 0 chr6 16055028 16055490 -166359752 + AluSx SINE Alu 1 475 0 2259 103 0 0 chr6 16056212 16056522 -166358720 + AluSx SINE Alu 3 312 0 227 143 71 36 chr6 16056736 16056792 -166358450 - MER20B DNA MER1_type -712 71 14 2286 89 0 3 chr6 16056875 16057178 -166358064 + AluSc SINE Alu 1 302 -7 1975 133 20 0 chr6 16057510 16057804 -166357438 - AluSx SINE Alu -12 300 1 803 57 0 9 chr6 16057879 16057984 -166357258 + AluSq/x SINE Alu 2 105 -207 967 165 21 0 chr6 16058183 16058371 -166356871 + AluSc SINE Alu 96 287 -22 1095 114 6 6 chr6 16058459 16058626 -166356616 + AluSc SINE Alu 128 294 -15 2014 122 0 41 chr6 16058693 16058828 -166356414 + AluSg SINE Alu 1 140 -170 2342 84 3 0 chr6 16058828 16059138 -166356104 + AluSp SINE Alu 1 311 -2 2014 122 0 41 chr6 16059138 16059322 -166355920 + AluSg SINE Alu 140 307 -3 1033 164 27 170 chr6 16059362 16059692 -166355550 - MLT1A1 LTR MaLR 0 365 83 3242 110 26 46 chr6 16059693 16059762 -166355480 + L1MB2 LINE L1 5631 5700 -471 1986 141 20 0 chr6 16059762 16060068 -166355174 - AluSx SINE Alu 0 312 1 3242 110 26 46 chr6 16060068 16060497 -166354745 + L1MB2 LINE L1 5700 6120 -51 2196 84 6 26 chr6 16060497 16060808 -166354434 + AluSx SINE Alu 1 305 -7 3242 110 26 46 chr6 16060808 16060853 -166354389 + L1MB2 LINE L1 6120 6164 -7 189 372 13 0 chr6 16060887 16060965 -166354277 - L2 LINE L2 -214 3058 2980 346 262 111 23 chr6 16061356 16061528 -166353714 + MER2 DNA MER2_type 159 345 0 189 0 0 0 chr6 16061849 16061870 -166353372 + (A)n Simple_repeat Simple_repeat 1 21 0 2234 145 60 0 chr6 16062095 16062475 -166352767 + MER57A LTR ERV1 1 403 0 1278 128 0 5 chr6 16062646 16062842 -166352400 - AluSg SINE Alu -2 308 114 2078 179 74 31 chr6 16062842 16063300 -166351942 - LTR2B LTR ERV1 0 490 13 576 97 269 0 chr6 16063305 16063398 -166351844 - AluSg SINE Alu -190 120 3 546 199 226 22 chr6 16063518 16063699 -166351543 - MIR SINE MIR -3 259 42 1553 224 23 11 chr6 16063699 16064047 -166351195 - MLT1C LTR MaLR 0 467 116 2138 101 13 0 chr6 16064047 16064353 -166350889 - AluSp SINE Alu -3 310 1 1350 195 3 69 chr6 16064371 16064705 -166350537 - AluJo SINE Alu 0 312 1 3477 182 15 24 chr6 16064715 16065008 -166350234 - L1MB4 LINE L1 -1 6179 5885 1967 99 49 0 chr6 16065008 16065292 -166349950 - AluSq SINE Alu -12 301 4 3477 182 15 24 chr6 16065292 16065712 -166349530 - L1MB4 LINE L1 -295 5885 5472 726 183 7 29 chr6 16065712 16065849 -166349393 - FLAM_C SINE Alu -8 135 2 1557 155 9 51 chr6 16065883 16066199 -166349043 + AluJo SINE Alu 1 303 -9 279 96 0 159 chr6 16066216 16066277 -166348965 - MLT1C LTR MaLR -265 125 80 1855 76 13 83 chr6 16066277 16066579 -166348663 - AluSp SINE Alu -32 281 1 279 96 0 159 chr6 16066579 16066594 -166348648 - MLT1C LTR MaLR -310 80 64 2291 104 0 0 chr6 16066815 16067124 -166348118 - AluSg SINE Alu -1 309 1 2052 109 27 0 chr6 16067941 16068235 -166347007 - AluSx SINE Alu -8 304 3 2063 75 0 0 chr6 16068324 16068590 -166346652 - AluSc SINE Alu -12 297 32 1641 135 49 118 chr6 16068634 16069065 -166346177 + MER57A LTR ERV1 3 403 0 813 198 169 21 chr6 16069248 16069332 -166345910 + AluJo SINE Alu 11 81 -231 2053 103 7 3 chr6 16069332 16069622 -166345620 - AluSp SINE Alu -22 291 1 813 198 169 21 chr6 16069622 16069641 -166345601 + AluJo SINE Alu 81 96 -216 216 0 0 0 chr6 16069641 16069665 -166345577 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 813 198 169 21 chr6 16069665 16069803 -166345439 + AluJo SINE Alu 96 289 -23 2070 132 0 13 chr6 16069958 16070268 -166344974 + AluJo SINE Alu 3 308 -4 313 270 131 7 chr6 16071277 16071415 -166343827 - MIR SINE MIR -80 128 18 2604 153 2 42 chr6 16072656 16072699 -166342543 - MER50 LTR ERV1 -25 709 666 2045 116 3 0 chr6 16072699 16073001 -166342241 - AluSx SINE Alu -9 303 1 2604 153 2 42 chr6 16073001 16073408 -166341834 - MER50 LTR ERV1 -68 666 277 1762 95 28 60 chr6 16073464 16073622 -166341620 - MER50 LTR ERV1 -459 275 127 1729 136 33 7 chr6 16073622 16073925 -166341317 - AluSc SINE Alu 0 310 1 1762 95 28 60 chr6 16073925 16074049 -166341193 - MER50 LTR ERV1 -607 127 1 294 194 0 0 chr6 16074882 16074954 -166340288 + (TG)n Simple_repeat Simple_repeat 2 73 0 1712 152 11 105 chr6 16074956 16075338 -166339904 - MER7A DNA MER2_type -1 345 2 398 313 65 13 chr6 16075354 16075584 -166339658 - L1MC4 LINE L1 -112 7930 7689 2266 98 7 0 chr6 16075737 16076042 -166339200 + AluSq SINE Alu 1 307 -6 194 281 0 94 chr6 16076307 16076372 -166338870 + L2 LINE L2 3227 3282 -31 2239 98 7 0 chr6 16076372 16076678 -166338564 + AluSx SINE Alu 3 310 -2 194 281 0 94 chr6 16076678 16076708 -166338534 + L2 LINE L2 3282 3313 0 315 0 0 0 chr6 16076809 16076844 -166338398 + (TA)n Simple_repeat Simple_repeat 2 36 0 1840 114 96 0 chr6 16077586 16077866 -166337376 - AluSg SINE Alu -3 307 1 23 33 0 0 chr6 16077925 16077955 -166337287 + AT_rich Low_complexity Low_complexity 1 30 0 780 200 7 7 chr6 16077955 16078100 -166337142 - FRAM SINE Alu -31 145 1 337 353 43 0 chr6 16079153 16079292 -166335950 + MIR SINE MIR 88 232 -30 415 156 0 0 chr6 16079318 16079382 -166335860 - MSTA LTR MaLR 0 428 365 580 167 0 0 chr6 16079382 16079472 -166335770 + AluJb SINE Alu 210 299 -13 581 250 0 9 chr6 16079484 16079644 -166335598 + FLAM_A SINE Alu 2 160 0 2703 138 40 26 chr6 16079664 16080123 -166335119 + L1MB2 LINE L1 5657 6125 -46 2106 105 7 0 chr6 16080123 16080419 -166334823 - AluSp SINE Alu -15 298 1 2703 138 40 26 chr6 16080419 16080453 -166334789 + L1MB2 LINE L1 6125 6157 -14 2153 105 0 13 chr6 16080589 16080895 -166334347 + AluSx SINE Alu 2 303 -9 24 103 0 0 chr6 16080941 16081028 -166334214 + AT_rich Low_complexity Low_complexity 1 87 0 1630 190 0 3 chr6 16081206 16081506 -166333736 - AluJb SINE Alu -13 299 1 209 256 227 64 chr6 16082741 16082913 -166332329 - L2 LINE L2 -13 3300 3101 745 145 0 0 chr6 16083019 16083136 -166332106 + FLAM_C SINE Alu 27 143 0 2028 123 3 0 chr6 16083149 16083442 -166331800 + AluSx SINE Alu 1 294 -18 820 206 50 0 chr6 16083455 16083635 -166331607 + AluSg/x SINE Alu 121 309 -1 795 271 48 0 chr6 16083655 16083906 -166331336 - MLT1J LTR MaLR -248 263 1 275 300 29 73 chr6 16084353 16084512 -166330730 + MIR SINE MIR 33 183 -77 1257 187 37 95 chr6 16084532 16084601 -166330641 - MLT1E3 LTR MaLR 0 624 553 2354 63 0 3 chr6 16084601 16084900 -166330342 + AluY SINE Alu 1 298 -13 1797 117 0 54 chr6 16084908 16085103 -166330139 - AluJb SINE Alu 0 317 144 2398 67 0 13 chr6 16085103 16085418 -166329824 - AluY SINE Alu 0 311 1 1797 117 0 54 chr6 16085418 16085555 -166329687 - AluJb SINE Alu -173 144 1 1257 187 37 95 chr6 16085555 16085823 -166329419 - MLT1E3 LTR MaLR -78 546 297 711 121 0 0 chr6 16085923 16086022 -166329220 + AluJ/FLAM SINE Alu 2 100 -212 393 253 149 32 chr6 16086084 16086238 -166329004 + MIR SINE MIR 20 191 -71 192 217 0 0 chr6 16086339 16086385 -166328857 + CT-rich Low_complexity Low_complexity 4 49 0 2635 94 0 121 chr6 16086434 16086518 -166328724 - Tigger2 DNA MER2_type -1 2717 2624 1714 170 0 3 chr6 16086518 16086812 -166328430 - AluJb SINE Alu -19 293 1 2635 94 0 121 chr6 16086812 16086824 -166328418 - Tigger2 DNA MER2_type -94 2624 2612 2066 105 3 3 chr6 16086824 16087120 -166328122 - AluSg SINE Alu -14 296 1 2635 94 0 121 chr6 16087120 16087419 -166327823 - Tigger2 DNA MER2_type -106 2612 2386 2288 76 0 10 chr6 16087419 16087733 -166327509 - AluY SINE Alu 0 311 1 2635 94 0 121 chr6 16087733 16087813 -166327429 - Tigger2 DNA MER2_type -332 2386 2298 490 100 0 14 chr6 16087819 16087889 -166327353 - Tigger2 DNA MER2_type -2649 69 1 1595 152 44 34 chr6 16089043 16089340 -166325902 - AluJo SINE Alu -11 301 2 667 229 0 0 chr6 16089423 16089541 -166325701 + FLAM_A SINE Alu 5 122 -11 2196 90 3 0 chr6 16089544 16089845 -166325397 - AluSq SINE Alu -11 302 1 27 0 0 0 chr6 16089845 16089872 -166325370 + AT_rich Low_complexity Low_complexity 1 27 0 340 247 60 73 chr6 16090035 16090185 -166325057 - MLT1J LTR MaLR 0 511 303 * 445 275 140 17 chr6 16090182 16090360 -166324882 - MLT1J LTR MaLR -311 200 1 412 329 71 6 chr6 16090478 16090648 -166324594 + MIR3 SINE MIR 18 198 -10 680 108 0 0 chr6 16090939 16091032 -166324210 - MER46B DNA MER2_type 0 236 144 349 126 78 6 chr6 16091032 16091199 -166324043 + (TA)n Simple_repeat Simple_repeat 2 180 0 1601 109 90 0 chr6 16091201 16091457 -166323785 - MER46B DNA MER2_type -82 154 1 378 100 0 33 chr6 16091409 16091469 -166323773 + MER46A DNA MER2_type 97 154 -82 * 1679 168 3 23 chr6 16091589 16091898 -166323344 - AluJo SINE Alu -9 303 1 283 86 0 0 chr6 16092208 16092243 -166322999 + U2 snRNA snRNA 1 35 -153 186 246 29 29 chr6 16092382 16092451 -166322791 - MIR SINE MIR -19 243 175 934 251 81 79 chr6 16092484 16092574 -166322668 + MLT1J LTR MaLR 17 105 -406 2127 90 0 14 chr6 16092574 16092897 -166322345 - AluSq SINE Alu 0 319 1 934 251 81 79 chr6 16092897 16093299 -166321943 + MLT1J LTR MaLR 105 511 0 1711 149 0 43 chr6 16093331 16093632 -166321610 + AluJo SINE Alu 1 288 -24 317 205 181 0 chr6 16093648 16093731 -166321511 - MIR SINE MIR -124 138 41 1952 132 3 7 chr6 16094709 16095004 -166320238 - AluSx SINE Alu -18 294 1 805 306 113 21 chr6 16095041 16095476 -166319766 + LTR33 LTR ERVL 40 514 -7 1837 107 28 77 chr6 16095647 16095785 -166319457 + AluSx SINE Alu 1 144 -168 1860 115 30 27 chr6 16095785 16096081 -166319161 + AluSx SINE Alu 3 299 -13 1837 107 28 77 chr6 16096081 16096269 -166318973 + AluSx SINE Alu 144 311 -1 2338 156 98 48 chr6 16097115 16097193 -166318049 + L1MB2 LINE L1 5587 5660 -511 2377 63 0 7 chr6 16097193 16097492 -166317750 + AluY SINE Alu 1 297 -14 2325 87 0 3 chr6 16097500 16097809 -166317433 + AluSg SINE Alu 1 308 -2 2338 156 98 48 chr6 16097809 16098130 -166317112 + L1MB2 LINE L1 5666 6029 -142 2151 125 30 25 chr6 16098130 16098497 -166316745 + L1PA14 LINE L1 5792 6160 -1 2338 156 98 48 chr6 16098497 16098605 -166316637 + L1MB2 LINE L1 6029 6130 -41 2197 109 0 10 chr6 16098611 16098923 -166316319 + AluSx SINE Alu 4 312 0 259 130 87 0 chr6 16098924 16098970 -166316272 + L1MB2 LINE L1 6115 6164 -7 249 269 192 0 chr6 16098980 16099058 -166316184 + MIR SINE MIR 159 251 -11 1241 196 51 75 chr6 16099232 16099604 -166315638 + MLT1A1 LTR MaLR 3 365 0 278 352 0 0 chr6 16099806 16099897 -166315345 - L2 LINE L2 0 3313 3223 2189 87 0 20 chr6 16099897 16100197 -166315045 + AluSq SINE Alu 1 294 -19 2156 100 0 10 chr6 16100520 16100820 -166314422 - AluSg SINE Alu -13 297 1 2156 94 3 3 chr6 16101360 16101658 -166313584 + AluSx SINE Alu 1 298 -14 367 95 108 27 chr6 16102072 16102146 -166313096 - MADE1 DNA Mariner 0 80 1 * 1054 171 87 66 chr6 16102144 16102166 -166313076 - MER33 DNA MER1_type -2278 307 287 1867 124 52 0 chr6 16102166 16102457 -166312785 - AluSq SINE Alu -7 306 1 1054 171 87 66 chr6 16102457 16102720 -166312522 - MER33 DNA MER1_type -2298 287 16 294 284 108 34 chr6 16102724 16102872 -166312370 + MIR3 SINE MIR 49 207 -1 333 208 104 66 chr6 16102949 16103055 -166312187 - L1ME4a LINE L1 -3 6118 6009 793 173 0 0 chr6 16103077 16103204 -166312038 + FLAM_A SINE Alu 1 127 -6 415 207 102 15 chr6 16104760 16104775 -166310467 - MLT1A2 LTR MaLR -232 158 146 2125 69 35 0 chr6 16104775 16105064 -166310178 + AluSx SINE Alu 1 299 -13 415 207 102 15 chr6 16105064 16105175 -166310067 - MLT1A2 LTR MaLR -244 146 42 246 279 36 36 chr6 16105175 16105286 -166309956 + MER34B LTR ERV1 5 115 -450 216 97 0 0 chr6 16105616 16105647 -166309595 + (TA)n Simple_repeat Simple_repeat 1 31 0 363 148 102 45 chr6 16105651 16105739 -166309503 + MER34 LTR ERV1 450 542 0 476 129 165 0 chr6 16106111 16106196 -166309046 + MER41C LTR ERV1 1 99 -455 2118 79 18 0 chr6 16106196 16106473 -166308769 - AluSq SINE Alu -2 311 30 1447 101 5 19 chr6 16106473 16106680 -166308562 - AluSx SINE Alu -108 204 1 3722 120 0 11 chr6 16106686 16107234 -166308008 + MER41B LTR ERV1 94 635 0 2008 115 10 22 chr6 16107559 16107873 -166307369 + AluSq SINE Alu 1 310 -3 356 0 23 0 chr6 16107930 16107974 -166307268 + (CA)n Simple_repeat Simple_repeat 1 45 0 242 222 0 19 chr6 16108680 16108734 -166306508 + CT-rich Low_complexity Low_complexity 5 57 0 836 178 24 24 chr6 16109037 16109206 -166306036 + MER20B DNA MER1_type 17 185 -34 2433 77 0 0 chr6 16109209 16109521 -166305721 + AluSx SINE Alu 1 312 0 2412 71 3 0 chr6 16109644 16109955 -166305287 + AluSq SINE Alu 2 313 0 230 248 173 45 chr6 16110032 16110165 -166305077 - MIR SINE MIR -82 180 31 2015 120 0 0 chr6 16110320 16110633 -166304609 + AluSc SINE Alu 1 309 0 2373 71 0 0 chr6 16110737 16111045 -166304197 + AluY SINE Alu 1 308 -3 1030 57 0 0 chr6 16111058 16111181 -166304061 + AluSq/x SINE Alu 1 123 -190 635 111 0 11 chr6 16111188 16111278 -166303964 + L1MD1 LINE L1 5504 5592 -767 1959 93 30 0 chr6 16111282 16111550 -166303692 + AluSg SINE Alu 1 276 -34 192 40 0 0 chr6 16111552 16111577 -166303665 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1198 174 0 43 chr6 16111603 16111838 -166303404 - AluJo SINE Alu -32 280 56 2248 176 36 38 chr6 16111841 16111878 -166303364 + L1MD1 LINE L1 5576 5612 -630 2028 119 0 13 chr6 16111878 16112180 -166303062 + AluSg SINE Alu 1 298 -12 2248 176 36 38 chr6 16112180 16112613 -166302629 + L1MD1 LINE L1 5612 6045 -197 1197 90 0 0 chr6 16112618 16112774 -166302468 + AluSg SINE Alu 49 204 -106 1039 187 36 0 chr6 16112775 16112994 -166302248 + L1MD1 LINE L1 6009 6235 -7 194 0 39 0 chr6 16112994 16113020 -166302222 + (TA)n Simple_repeat Simple_repeat 1 27 0 200 151 0 38 chr6 16113020 16113043 -166302199 + (TAGA)n Simple_repeat Simple_repeat 1 23 -28 2119 128 3 0 chr6 16113043 16113348 -166301894 + AluJo SINE Alu 1 306 -6 200 151 0 38 chr6 16113348 16113377 -166301865 + (TAGA)n Simple_repeat Simple_repeat 23 51 0 240 345 73 0 chr6 16114105 16114215 -166301027 - L2 LINE L2 -10 3262 3145 793 306 78 0 chr6 16114250 16114469 -166300773 + MIR SINE MIR 15 250 -12 881 217 116 98 chr6 16114556 16114913 -166300329 - MER4C LTR ERV1 0 695 156 1234 160 14 0 chr6 16114913 16115132 -166300110 + AluJb SINE Alu 84 305 -7 1220 148 3 172 chr6 16115137 16115521 -166299721 - MER4A LTR ERV1 -345 319 1 2403 52 0 16 chr6 16116280 16116588 -166298654 + AluY SINE Alu 1 303 -8 1780 173 0 6 chr6 16116819 16117131 -166298111 + AluJb SINE Alu 2 311 -1 5111 81 25 23 chr6 16117160 16117698 -166297544 - LTR8 LTR ERV1 0 691 150 2062 119 3 3 chr6 16117698 16118008 -166297234 + AluSx SINE Alu 1 310 -2 5111 81 25 23 chr6 16118008 16118159 -166297083 - LTR8 LTR ERV1 -541 150 1 297 241 35 11 chr6 16118526 16118613 -166296629 + GA-rich Low_complexity Low_complexity 5 93 0 820 218 33 90 chr6 16119510 16119679 -166295563 - MLT1B LTR MaLR -4 361 187 1200 181 52 38 chr6 16119679 16119967 -166295275 - AluJo SINE Alu -16 296 5 820 218 33 90 chr6 16119967 16120134 -166295108 - MLT1B LTR MaLR -178 187 12 1559 130 16 4 chr6 16120139 16120386 -166294856 - AluSq SINE Alu -63 250 1 3494 141 65 14 chr6 16120397 16120979 -166294263 - LTR9 LTR ERV1 0 612 1 693 161 0 9 chr6 16120993 16121105 -166294137 + AluJo/FLAM SINE Alu 9 119 -193 2102 123 0 0 chr6 16121107 16121400 -166293842 - AluSx SINE Alu -19 293 1 261 180 0 0 chr6 16121713 16121763 -166293479 + T-rich Low_complexity Low_complexity 1 50 0 196 255 0 0 chr6 16121865 16121916 -166293326 + L2 LINE L2 3263 3313 0 195 161 0 0 chr6 16122260 16122291 -166292951 - L2 LINE L2 -11 3261 3231 246 344 75 11 chr6 16122292 16122385 -166292857 - L2 LINE L2 -6 3307 3209 1621 183 0 22 chr6 16122568 16122880 -166292362 + AluJo SINE Alu 2 306 -6 2201 75 3 0 chr6 16122908 16123214 -166292028 + AluSp SINE Alu 1 307 0 659 188 0 0 chr6 16123214 16123331 -166291911 + AluSg/x SINE Alu 184 300 -10 302 239 14 0 chr6 16123953 16124024 -166291218 + MER116 DNA Mariner 5 76 -4 1049 156 0 0 chr6 16124072 16124239 -166291003 - FRAM SINE Alu -10 166 1 463 257 223 0 chr6 16124239 16124414 -166290828 - MIR SINE MIR -37 225 12 1714 152 14 3 chr6 16124678 16124968 -166290274 - AluJb SINE Alu -8 304 12 262 254 123 57 chr6 16125153 16125275 -166289967 - MIR SINE MIR -82 180 51 1889 139 20 3 chr6 16126029 16126324 -166288918 - AluJo SINE Alu -10 302 3 2063 116 3 19 chr6 16126461 16126779 -166288463 + AluSq SINE Alu 1 313 0 1711 147 0 0 chr6 16127063 16127329 -166287913 - AluSq SINE Alu -47 266 1 189 0 0 0 chr6 16127337 16127358 -166287884 + (T)n Simple_repeat Simple_repeat 1 21 0 718 172 16 0 chr6 16127370 16127492 -166287750 - FLAM_A SINE Alu -9 124 1 2137 104 10 0 chr6 16127572 16127870 -166287372 + AluSg SINE Alu 1 301 -9 1928 125 0 0 chr6 16127871 16128150 -166287092 - AluSx SINE Alu -31 281 3 435 261 72 31 chr6 16128165 16128360 -166286882 - MER113 DNA MER1_type? -209 312 110 278 290 139 16 chr6 16128362 16128607 -166286635 - L1MC5 LINE L1 -72 7889 7615 253 144 45 126 chr6 16128627 16128738 -166286504 - MER113 DNA MER1_type? -388 133 32 1315 86 0 0 chr6 16128795 16128969 -166286273 + AluSq SINE Alu 138 311 -2 2043 137 0 3 chr6 16129062 16129369 -166285873 + AluSx SINE Alu 1 306 -6 301 209 0 15 chr6 16129578 16129645 -166285597 - Tigger5 DNA MER2_type -16 2307 2242 * 435 200 0 0 chr6 16129635 16129710 -166285532 + Tigger5 DNA MER2_type 2242 2316 -7 369 157 129 0 chr6 16129713 16129783 -166285459 - Tigger5 DNA MER2_type -2244 79 1 518 305 14 7 chr6 16129866 16130007 -166285235 + MIR SINE MIR 26 167 -95 2136 113 0 3 chr6 16130322 16130622 -166284620 + AluSq SINE Alu 1 299 -14 326 224 0 0 chr6 16130817 16130884 -166284358 + MIR SINE MIR 196 262 0 251 169 15 46 chr6 16131194 16131259 -166283983 + LTR29 LTR ERV1 137 199 -423 * 1505 238 88 33 chr6 16131246 16131737 -166283505 + LTR48B LTR ERV1 91 608 -36 199 176 20 59 chr6 16132244 16132295 -166282947 - MIR3 SINE MIR 0 208 160 432 241 44 79 chr6 16132350 16132468 -166282774 + L1ME4a LINE L1 5576 5684 -437 2098 98 14 14 chr6 16132468 16132764 -166282478 - AluSx SINE Alu -16 296 1 432 241 44 79 chr6 16132764 16132873 -166282369 + L1ME4a LINE L1 5684 5795 -326 2036 117 0 0 chr6 16132917 16133199 -166282043 + AluSx SINE Alu 1 282 -30 227 236 75 38 chr6 16133390 16133496 -166281746 + L1ME4a LINE L1 6012 6121 0 1266 258 79 12 chr6 16133711 16134129 -166281113 + MLT1C LTR MaLR 22 467 0 888 158 48 0 chr6 16134254 16134400 -166280842 + AluJb SINE Alu 141 293 -19 2282 83 0 6 chr6 16134420 16134733 -166280509 + AluY SINE Alu 1 311 0 2133 65 8 0 chr6 16135541 16135803 -166279439 + HERVL LTR ERVL 4375 4638 -1016 2038 107 6 38 chr6 16136356 16136675 -166278567 - AluSx SINE Alu -3 309 1 234 0 0 0 chr6 16136675 16136701 -166278541 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 889 139 6 44 chr6 16136701 16136859 -166278383 - FRAM SINE Alu -29 147 1 2203 104 0 7 chr6 16137252 16137559 -166277683 + AluSx SINE Alu 1 305 -7 2039 127 0 0 chr6 16138720 16139019 -166276223 + AluSq SINE Alu 2 300 -13 494 76 25 0 chr6 16139021 16139100 -166276142 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 262 359 28 9 chr6 16139144 16139250 -166275992 + MIR SINE MIR 20 127 -81 8429 112 49 42 chr6 16139543 16140119 -166275123 - Tigger1 DNA MER2_type 0 2418 1848 2174 92 3 3 chr6 16140119 16140413 -166274829 + AluSg SINE Alu 1 294 -16 2152 122 3 0 chr6 16140423 16140734 -166274508 + AluSx SINE Alu 1 312 0 8429 112 49 42 chr6 16140734 16140842 -166274400 - Tigger1 DNA MER2_type -578 1840 1734 1721 139 51 14 chr6 16140842 16141136 -166274106 - AluSq SINE Alu -8 305 1 8429 112 49 42 chr6 16141136 16141846 -166273396 - Tigger1 DNA MER2_type -684 1734 1002 22 0 0 0 chr6 16141846 16141868 -166273374 + AT_rich Low_complexity Low_complexity 1 22 0 2155 128 0 0 chr6 16141910 16142259 -166272983 - AluSx SINE Alu 0 349 1 2148 98 0 25 chr6 16142278 16142596 -166272646 - AluSg SINE Alu 0 310 1 369 0 0 0 chr6 16142596 16142637 -166272605 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 201 74 0 0 chr6 16142653 16142680 -166272562 + (T)n Simple_repeat Simple_repeat 1 27 0 236 224 0 0 chr6 16142680 16142729 -166272513 - Tigger1 DNA MER2_type -1407 1011 963 735 84 0 0 chr6 16142730 16142825 -166272417 + AluSp SINE Alu 2 96 -217 2073 87 35 0 chr6 16142825 16143114 -166272128 + AluSp SINE Alu 1 299 -14 1479 128 4 0 chr6 16143114 16143340 -166271902 + AluSp SINE Alu 82 309 -4 5674 128 15 81 chr6 16143343 16144121 -166271121 - Tigger1 DNA MER2_type -1448 970 143 1758 156 7 3 chr6 16144121 16144410 -166270832 + AluJb SINE Alu 1 290 -22 1993 106 3 11 chr6 16144417 16144699 -166270543 + AluSx SINE Alu 1 280 -32 222 23 45 45 chr6 16144700 16144744 -166270498 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5674 128 15 81 chr6 16144744 16144936 -166270306 - Tigger1 DNA MER2_type -2281 137 59 180 0 0 0 chr6 16144936 16144956 -166270286 + (GA)n Simple_repeat Simple_repeat 2 21 0 5674 128 15 81 chr6 16144956 16145012 -166270230 - Tigger1 DNA MER2_type -2359 59 1 902 193 17 80 chr6 16145429 16145668 -166269574 - MLT1A2 LTR MaLR 0 374 151 655 169 14 68 chr6 16145674 16145822 -166269420 - L1PA16 LINE L1 -22 6144 6005 722 181 12 50 chr6 16145827 16145848 -166269394 - MLT1A2 LTR MaLR -211 154 134 1867 181 48 14 chr6 16145848 16146201 -166269041 - MLT1A1 LTR MaLR 0 365 1 722 181 12 50 chr6 16146201 16146339 -166268903 - MLT1A2 LTR MaLR -231 134 1 211 256 336 40 chr6 16146339 16146464 -166268778 - MIR SINE MIR -99 163 2 2015 138 0 3 chr6 16146517 16146829 -166268413 + AluSx SINE Alu 1 311 -1 2191 86 0 13 chr6 16146865 16147166 -166268076 + AluSq SINE Alu 1 297 -16 953 211 54 5 chr6 16147200 16147404 -166267838 - MLT1C LTR MaLR -61 406 193 2243 119 0 0 chr6 16147444 16147756 -166267486 - AluSx SINE Alu 0 312 1 535 292 149 14 chr6 16147919 16148207 -166267035 - L2 LINE L2 -3 3269 2943 2166 108 3 0 chr6 16148266 16148573 -166266669 - AluSx SINE Alu -4 308 1 1606 158 70 0 chr6 16148576 16148861 -166266381 - AluJb SINE Alu -7 305 1 583 289 62 9 chr6 16149356 16149581 -166265661 + MER46C DNA MER2_type 3 239 -99 1621 183 0 3 chr6 16149977 16150261 -166264981 + AluJb SINE Alu 2 284 -28 787 174 54 27 chr6 16150293 16150442 -166264800 - FRAM SINE Alu -23 153 1 183 317 92 49 chr6 16150451 16150615 -166264627 + MIR SINE MIR 28 198 -64 1779 149 13 19 chr6 16150771 16151079 -166264163 - AluSx SINE Alu -6 306 1 26 0 0 0 chr6 16151084 16151110 -166264132 + AT_rich Low_complexity Low_complexity 1 26 0 816 115 0 31 chr6 16151110 16151240 -166264002 - FLAM_C SINE Alu -17 126 1 2396 53 0 13 chr6 16151358 16151662 -166263580 + AluY SINE Alu 1 300 -11 898 92 59 59 chr6 16151813 16151965 -166263277 - THE1C LTR MaLR -223 152 1 184 300 17 33 chr6 16152241 16152301 -166262941 + MER5A DNA MER1_type 84 142 -47 838 283 25 18 chr6 16152944 16153209 -166262033 + L2 LINE L2 3031 3300 -13 222 118 0 0 chr6 16153209 16153243 -166261999 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 838 283 25 18 chr6 16153243 16153256 -166261986 + L2 LINE L2 3300 3311 -2 284 272 136 22 chr6 16153967 16154151 -166261091 + MLT1K LTR MaLR 316 520 -68 231 36 0 0 chr6 16154154 16154182 -166261060 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1950 109 3 20 chr6 16154184 16154341 -166260901 - AluY SINE Alu -22 289 138 2440 57 0 13 chr6 16154341 16154656 -166260586 - AluY SINE Alu 0 311 1 1950 109 3 20 chr6 16154656 16154792 -166260450 - AluY SINE Alu -173 138 1 1834 140 18 0 chr6 16154798 16155084 -166260158 - AluSx SINE Alu -18 294 4 243 0 0 0 chr6 16155769 16155796 -166259446 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1979 132 6 28 chr6 16155800 16156118 -166259124 - AluSx SINE Alu -1 311 1 678 163 0 16 chr6 16156179 16156302 -166258940 - L1M1 LINE L1 -7431 134 14 2289 100 125 31 chr6 16156776 16157167 -166258075 + MSTA LTR MaLR 1 428 0 1029 275 123 37 chr6 16157167 16157713 -166257529 + MLT1L LTR MaLR 18 610 -5 331 184 103 11 chr6 16157728 16157815 -166257427 + MIR SINE MIR 158 252 -10 276 130 0 0 chr6 16158566 16158612 -166256630 + (CA)n Simple_repeat Simple_repeat 1 46 0 191 175 0 0 chr6 16159403 16159443 -166255799 + MIR SINE MIR 167 206 -56 348 153 0 111 chr6 16159539 16159611 -166255631 - AluJ/FLAM SINE Alu -238 64 1 2062 134 0 0 chr6 16159706 16160011 -166255231 - AluSx SINE Alu -7 305 1 1704 194 35 65 chr6 16161086 16161225 -166254017 - MLT1C LTR MaLR -6 461 319 3423 123 39 10 chr6 16161225 16161737 -166253505 - MER1A DNA MER1_type 0 527 1 1704 194 35 65 chr6 16161737 16162028 -166253214 - MLT1C LTR MaLR -148 319 43 1454 167 137 44 chr6 16162028 16162219 -166253023 - MLT1A2 LTR MaLR 0 374 202 2156 110 0 0 chr6 16162219 16162519 -166252723 + AluSx SINE Alu 1 300 -12 1454 167 137 44 chr6 16162519 16162669 -166252573 - MLT1A2 LTR MaLR -172 202 1 1704 194 35 65 chr6 16162669 16162695 -166252547 - MLT1C LTR MaLR -424 43 18 192 254 18 0 chr6 16163412 16163467 -166251775 - MIR SINE MIR -45 217 162 462 135 62 31 chr6 16163572 16163668 -166251574 + FLAM_C SINE Alu 30 128 -15 919 253 88 34 chr6 16163848 16164236 -166251006 + MLT1I LTR MaLR 1 409 0 1768 137 39 3 chr6 16164263 16164547 -166250695 - AluSx SINE Alu -18 294 1 286 267 19 38 chr6 16164903 16165008 -166250234 + MLT1K LTR MaLR 463 565 -23 1950 133 0 0 chr6 16165013 16165307 -166249935 - AluJb SINE Alu -5 307 14 2008 100 0 0 chr6 16165336 16165615 -166249627 + AluSx SINE Alu 34 312 0 1242 100 0 0 chr6 16165615 16165769 -166249473 + AluSg/x SINE Alu 129 305 -2 23 0 0 0 chr6 16165769 16165792 -166249450 + AT_rich Low_complexity Low_complexity 1 23 0 369 292 10 0 chr6 16165958 16166054 -166249188 - MIR3 SINE MIR -16 192 96 2399 72 3 0 chr6 16166778 16167083 -166248159 + AluSp SINE Alu 5 310 -3 2006 113 31 3 chr6 16167297 16167590 -166247652 + AluSx SINE Alu 1 301 -11 1863 157 0 3 chr6 16167855 16168161 -166247081 - AluJo SINE Alu -7 305 1 193 213 43 149 chr6 16168311 16168405 -166246837 + MIR SINE MIR 124 207 -55 198 0 0 0 chr6 16168576 16168598 -166246644 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 245 255 0 0 chr6 16168598 16168649 -166246593 - FLAM SINE Alu -17 116 66 2454 53 0 0 chr6 16168649 16168948 -166246294 + AluY SINE Alu 1 299 -12 1327 183 0 27 chr6 16168959 16169216 -166246026 - AluJo SINE Alu -62 250 1 2254 96 3 6 chr6 16169694 16170008 -166245234 - AluSp SINE Alu 0 313 1 2048 133 0 0 chr6 16170014 16170323 -166244919 - AluSx SINE Alu -3 309 1 1465 112 70 0 chr6 16170436 16170650 -166244592 + MER30 DNA MER1_type 1 229 -1 764 204 46 20 chr6 16170693 16170845 -166244397 + FRAM SINE Alu 1 156 -10 1591 101 86 34 chr6 16170877 16171324 -166243918 + AluSx SINE Alu 1 461 0 546 216 19 91 chr6 16171406 16171614 -166243628 + L1MD1 LINE L1 6035 6227 -15 1427 171 80 0 chr6 16171619 16171893 -166243349 + AluJb SINE Alu 1 296 -16 212 128 0 85 chr6 16172016 16172063 -166243179 + L2 LINE L2 3271 3313 0 2167 121 0 0 chr6 16172106 16172412 -166242830 + AluSc SINE Alu 1 306 -3 2071 131 0 0 chr6 16172417 16172722 -166242520 + AluSq SINE Alu 1 305 -8 746 223 146 5 chr6 16172724 16172944 -166242298 + MIR SINE MIR 12 262 0 1687 266 93 26 chr6 16173084 16173555 -166241687 - MLT1G1 LTR MaLR 0 595 84 1925 142 0 7 chr6 16173555 16173858 -166241384 - AluSx SINE Alu -11 301 1 1687 266 93 26 chr6 16173858 16173913 -166241329 - MLT1G1 LTR MaLR -511 84 34 796 139 9 0 chr6 16173913 16174028 -166241214 + MER74A LTR ERVL 1 116 -442 446 315 61 6 chr6 16174381 16174546 -166240696 - MIR3 SINE MIR -16 192 19 1915 138 40 0 chr6 16174754 16175052 -166240190 - AluSx SINE Alu 0 312 3 2148 109 6 6 chr6 16175066 16175378 -166239864 - AluSq SINE Alu -1 312 1 244 150 25 25 chr6 16175754 16175834 -166239408 + GA-rich Low_complexity Low_complexity 2 81 0 1182 128 0 0 chr6 16177544 16177723 -166237519 - AluSq SINE Alu 0 313 135 1747 166 0 10 chr6 16177763 16178070 -166237172 + AluJo SINE Alu 1 304 -8 322 299 111 14 chr6 16178075 16178219 -166237023 - MIR SINE MIR -14 248 91 2058 109 0 54 chr6 16178246 16178559 -166236683 - AluSx SINE Alu -16 296 1 2285 79 3 0 chr6 16178602 16178892 -166236350 - AluSp SINE Alu -18 295 5 230 261 114 23 chr6 16179265 16179353 -166235889 + LTR48B LTR ERV1 1 96 -548 * 1028 220 40 40 chr6 16179345 16179645 -166235597 + MER39 LTR ERV1 312 611 -96 1277 199 17 51 chr6 16179647 16179784 -166235458 + AluJo SINE Alu 1 141 -171 198 0 0 0 chr6 16179784 16179806 -166235436 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1277 199 17 51 chr6 16179806 16179960 -166235282 + AluJo SINE Alu 141 282 -30 2208 90 0 3 chr6 16179962 16180251 -166234991 - AluSx SINE Alu -13 299 12 28 0 0 0 chr6 16180269 16180297 -166234945 + AT_rich Low_complexity Low_complexity 1 28 0 2215 80 0 7 chr6 16180297 16180597 -166234645 + AluY SINE Alu 2 299 -12 2338 92 0 6 chr6 16180909 16181224 -166234018 + AluSq SINE Alu 1 313 0 312 206 205 12 chr6 16181227 16181342 -166233900 + MIR SINE MIR 46 181 -65 231 352 167 19 chr6 16181678 16181840 -166233402 - MIR SINE MIR -56 206 21 2227 60 0 7 chr6 16181914 16182227 -166233015 - AluY SINE Alu 0 311 1 2135 112 0 3 chr6 16182933 16183237 -166232005 + AluSx SINE Alu 1 303 -9 2061 78 60 0 chr6 16183244 16183525 -166231717 + AluSg SINE Alu 1 298 -12 497 228 0 88 chr6 16184103 16184158 -166231084 + MIR SINE MIR 96 154 -108 2162 113 0 0 chr6 16184158 16184460 -166230782 + AluSx SINE Alu 1 302 -10 497 228 0 88 chr6 16184460 16184540 -166230702 + MIR SINE MIR 154 219 -43 1801 113 22 7 chr6 16184671 16184946 -166230296 + AluSx SINE Alu 11 289 -23 27 62 0 0 chr6 16184946 16184994 -166230248 + AT_rich Low_complexity Low_complexity 1 48 0 1748 164 10 0 chr6 16185208 16185500 -166229742 + AluJo SINE Alu 1 295 -17 2211 68 0 42 chr6 16185677 16185984 -166229258 - AluY SINE Alu -17 294 1 257 236 0 90 chr6 16186098 16186145 -166229097 + L1ME4a LINE L1 5583 5620 -501 2267 89 0 7 chr6 16186145 16186449 -166228793 - AluSg SINE Alu -8 302 1 257 236 0 90 chr6 16186449 16186490 -166228752 + L1ME4a LINE L1 5620 5663 -458 277 236 97 42 chr6 16186569 16186713 -166228529 + L1ME4a LINE L1 5778 5929 -192 25 31 0 0 chr6 16186713 16186745 -166228497 + AT_rich Low_complexity Low_complexity 1 32 0 985 70 8 0 chr6 16186752 16186880 -166228362 - AluY SINE Alu -181 130 2 337 228 149 53 chr6 16186906 16186991 -166228251 + L1ME4a LINE L1 5959 6059 -62 2266 99 3 0 chr6 16186991 16187293 -166227949 - AluSx SINE Alu -9 303 1 337 228 149 53 chr6 16187293 16187321 -166227921 + L1ME4a LINE L1 6059 6083 -38 1908 214 85 26 chr6 16187323 16187963 -166227279 - L1ME2 LINE L1 -8 6162 5452 1197 162 0 50 chr6 16187977 16188199 -166227043 - AluJb SINE Alu -15 297 87 1800 98 44 63 chr6 16188238 16188553 -166226689 - AluSx SINE Alu -3 309 1 712 123 0 15 chr6 16188555 16188685 -166226557 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 2052 134 0 0 chr6 16188690 16188996 -166226246 + AluSx SINE Alu 3 308 -4 1243 168 34 71 chr6 16189035 16189188 -166226054 - AluJo SINE Alu -18 294 156 2110 111 0 3 chr6 16189188 16189476 -166225766 - AluSg SINE Alu -19 291 5 1243 168 34 71 chr6 16189476 16189619 -166225623 - AluJo SINE Alu -156 156 9 1721 146 56 0 chr6 16189717 16189890 -166225352 - AluSg SINE Alu -7 303 106 234 0 0 0 chr6 16189890 16189916 -166225326 + (TA)n Simple_repeat Simple_repeat 2 27 0 1721 146 56 0 chr6 16189916 16190029 -166225213 - AluSg SINE Alu -204 106 1 267 235 0 0 chr6 16190859 16190927 -166224315 - L1ME2 LINE L1 -767 5395 5328 2076 181 57 75 chr6 16191291 16191855 -166223387 - MLT2B3 LTR ERVL 0 554 1 2019 113 0 45 chr6 16191938 16192248 -166222994 - AluSg SINE Alu -14 296 1 630 323 16 16 chr6 16192310 16192502 -166222740 - L2 LINE L2 0 3272 3081 27 49 0 0 chr6 16192566 16192607 -166222635 + AT_rich Low_complexity Low_complexity 1 41 0 2085 125 3 0 chr6 16192726 16193022 -166222220 - AluSx SINE Alu -15 297 1 540 100 0 0 chr6 16195023 16195103 -166220139 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 238 200 150 0 chr6 16196380 16196460 -166218782 - L1MC4 LINE L1 -1337 6705 6614 333 258 21 43 chr6 16196500 16196593 -166218649 + L1MC4 LINE L1 6614 6704 -1338 187 155 0 69 chr6 16196594 16196652 -166218590 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 235 150 0 0 chr6 16196654 16196694 -166218548 - L1MC4 LINE L1 -1341 6701 6662 1917 120 0 11 chr6 16196821 16197130 -166218112 - AluY SINE Alu 0 306 1 2065 122 3 0 chr6 16197130 16197425 -166217817 - AluSq SINE Alu -16 297 2 385 230 14 74 chr6 16197826 16197974 -166217268 + Charlie7 DNA MER1_type 1 139 -2473 1384 200 48 3 chr6 16198142 16198437 -166216805 + AluJb SINE Alu 5 312 0 213 65 0 0 chr6 16198437 16198468 -166216774 + (GA)n Simple_repeat Simple_repeat 1 31 0 567 0 0 0 chr6 16198468 16198531 -166216711 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 776 173 8 8 chr6 16198550 16198683 -166216559 + FLAM_C SINE Alu 1 133 0 1472 101 0 18 chr6 16198900 16199118 -166216124 - AluSx SINE Alu -96 216 3 669 143 9 194 chr6 16199154 16199206 -166216036 - MER33 DNA MER1_type -2298 326 266 1953 118 0 67 chr6 16199206 16199520 -166215722 + AluSx SINE Alu 3 295 -17 669 143 9 194 chr6 16199520 16199638 -166215604 - MER33 DNA MER1_type -2358 266 128 1576 139 95 7 chr6 16199638 16199911 -166215331 + 7SLRNA srpRNA srpRNA 15 311 -9 669 143 9 194 chr6 16199911 16199931 -166215311 - MER33 DNA MER1_type -2496 128 106 1810 156 0 0 chr6 16199931 16200213 -166215029 + AluJo SINE Alu 1 282 -30 324 0 0 0 chr6 16200213 16200249 -166214993 + (TA)n Simple_repeat Simple_repeat 2 37 0 669 143 9 194 chr6 16200249 16200405 -166214837 - MER33 DNA MER1_type -2516 108 3 1721 156 7 20 chr6 16200642 16200944 -166214298 + AluJb SINE Alu 1 298 -14 498 197 27 122 chr6 16200974 16201092 -166214150 - MIR SINE MIR -87 175 79 1875 117 7 4 chr6 16201092 16201402 -166213840 + AluSx SINE Alu 8 318 0 498 197 27 122 chr6 16201402 16201470 -166213772 - MIR SINE MIR -183 79 6 2585 154 66 59 chr6 16201562 16201625 -166213617 + LTR26B LTR ERV1 1 62 -469 2073 114 0 3 chr6 16201625 16201922 -166213320 + AluSx SINE Alu 1 296 -16 2585 154 66 59 chr6 16201922 16202385 -166212857 + LTR26B LTR ERV1 62 531 0 2154 106 0 0 chr6 16202943 16203235 -166212007 - AluSq SINE Alu -21 292 1 22 0 0 0 chr6 16203393 16203415 -166211827 + AT_rich Low_complexity Low_complexity 1 22 0 1346 162 13 87 chr6 16204172 16204313 -166210929 + AluJo SINE Alu 1 109 -203 1603 195 0 0 chr6 16204313 16204617 -166210625 + AluJb SINE Alu 1 304 0 1346 162 13 87 chr6 16204617 16204783 -166210459 + AluJo SINE Alu 109 286 -26 25 0 0 0 chr6 16205509 16205534 -166209708 + AT_rich Low_complexity Low_complexity 1 25 0 1399 12 6 6 chr6 16205536 16205701 -166209541 - L1PA3 LINE L1 0 6155 5991 804 128 21 57 chr6 16205723 16205864 -166209378 - FLAM_C SINE Alu -6 137 2 2165 100 0 0 chr6 16206216 16206506 -166208736 - AluSq SINE Alu -23 290 1 23 78 0 0 chr6 16206729 16206780 -166208462 + AT_rich Low_complexity Low_complexity 1 51 0 187 295 175 12 chr6 16206881 16207034 -166208208 + MIR SINE MIR 20 208 -54 624 198 48 0 chr6 16207071 16207197 -166208045 + AluJo SINE Alu 39 170 -142 2289 88 3 3 chr6 16207251 16207559 -166207683 + AluSp SINE Alu 3 310 -3 724 164 0 36 chr6 16208278 16208418 -166206824 - FRAM SINE Alu 0 40 1 829 215 0 36 chr6 16208593 16208788 -166206454 - AluSg/x SINE Alu -7 303 116 786 304 11 8 chr6 16208793 16209056 -166206186 - L1ME4a LINE L1 -247 5874 5611 2256 100 49 31 chr6 16209077 16209226 -166206016 + THE1A LTR MaLR 1 146 -209 2026 118 3 0 chr6 16209226 16209530 -166205712 - AluSq SINE Alu -8 305 1 2256 100 49 31 chr6 16209530 16209729 -166205513 + THE1A LTR MaLR 146 355 0 432 103 0 0 chr6 16210025 16210093 -166205149 - L1PB3 LINE L1 0 6154 6087 2103 106 10 0 chr6 16210116 16210408 -166204834 - AluSq SINE Alu -18 295 1 966 108 36 209 chr6 16210624 16210703 -166204539 + MER30 DNA MER1_type 1 92 -138 1836 153 3 0 chr6 16210703 16210990 -166204252 + AluSx SINE Alu 1 288 -24 1931 115 11 0 chr6 16211000 16211287 -166203955 + AluSq SINE Alu 1 290 -23 966 108 36 209 chr6 16211287 16211474 -166203768 + MER30 DNA MER1_type 102 230 0 1393 165 76 3 chr6 16211513 16211804 -166203438 + AluJo SINE Alu 1 312 0 494 69 0 14 chr6 16211804 16211876 -166203366 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1127 71 0 33 chr6 16211876 16212060 -166203182 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2432 58 3 7 chr6 16212393 16212703 -166202539 - AluSc SINE Alu 0 309 1 1555 192 3 42 chr6 16212714 16213022 -166202220 - AluJo SINE Alu -2 300 5 1888 53 0 16 chr6 16213041 16213284 -166201958 + AluY SINE Alu 57 295 -16 1064 99 6 17 chr6 16213288 16213469 -166201773 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 240 111 0 0 chr6 16213469 16213505 -166201737 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2179 99 7 3 chr6 16213505 16213809 -166201433 - AluSx SINE Alu -3 309 5 1864 140 7 3 chr6 16213839 16214131 -166201111 + AluSq SINE Alu 1 293 -20 1837 135 0 43 chr6 16214216 16214354 -166200888 + AluJb SINE Alu 1 143 -190 2252 92 3 3 chr6 16214354 16214660 -166200582 + AluSp SINE Alu 1 306 -7 1837 135 0 43 chr6 16214660 16214868 -166200374 + AluJb SINE Alu 143 333 0 3682 105 39 60 chr6 16215147 16215396 -166199846 + MER39B LTR ERV1 1 254 -399 2211 115 0 3 chr6 16215396 16215708 -166199534 + AluSq SINE Alu 1 311 -2 3682 105 39 60 chr6 16215708 16215955 -166199287 + MER39B LTR ERV1 254 482 -171 2212 102 0 3 chr6 16215955 16216258 -166198984 + AluSx SINE Alu 1 302 -10 3682 105 39 60 chr6 16216258 16216427 -166198815 + MER39B LTR ERV1 482 653 0 227 182 36 18 chr6 16216863 16216918 -166198324 + MIR SINE MIR 96 151 -111 2095 129 0 0 chr6 16217086 16217389 -166197853 + AluSx SINE Alu 1 303 -9 1222 196 0 0 chr6 16217401 16217651 -166197591 + L1MA4 LINE L1 6049 6298 -2 2258 97 0 0 chr6 16217659 16217957 -166197285 + AluSx SINE Alu 1 298 -14 832 118 0 59 chr6 16217958 16218094 -166197148 + FLAM_C SINE Alu 1 128 -5 306 143 0 0 chr6 16218285 16218348 -166196894 + (TC)n Simple_repeat Simple_repeat 2 64 0 282 29 0 0 chr6 16218348 16218383 -166196859 + (CA)n Simple_repeat Simple_repeat 1 35 0 259 395 35 23 chr6 16218897 16219069 -166196173 - MIR3 SINE MIR -15 193 20 196 274 129 0 chr6 16219100 16219162 -166196080 - L2 LINE L2 0 3313 3244 28 0 0 0 chr6 16220512 16220540 -166194702 + AT_rich Low_complexity Low_complexity 1 28 0 1517 126 72 47 chr6 16220596 16220874 -166194368 - AluJb SINE Alu -27 285 1 275 238 0 0 chr6 16221060 16221123 -166194119 + L1MA8 LINE L1 6181 6243 -48 269 309 12 12 chr6 16221491 16221575 -166193667 - MIR3 SINE MIR -30 178 95 202 288 54 72 chr6 16221546 16221657 -166193585 + MIR3 SINE MIR 85 193 -15 * 2220 88 7 0 chr6 16222473 16222770 -166192472 + AluSx SINE Alu 1 299 -13 1749 161 0 10 chr6 16223438 16223742 -166191500 - AluJb SINE Alu -11 301 1 2282 94 3 3 chr6 16224257 16224566 -166190676 + AluSc SINE Alu 1 309 0 229 253 274 11 chr6 16224872 16224967 -166190275 - MER5A DNA MER1_type 0 189 70 2231 90 0 16 chr6 16224988 16225300 -166189942 - AluSq SINE Alu -6 307 1 2249 81 0 3 chr6 16225865 16226162 -166189080 - AluSg SINE Alu -14 296 1 392 374 61 9 chr6 16226183 16226397 -166188845 - MIR SINE MIR -7 255 31 923 128 0 0 chr6 16226688 16226821 -166188421 - FLAM_C SINE Alu 0 133 1 2349 93 0 0 chr6 16226888 16227198 -166188044 + AluSx SINE Alu 1 310 -2 1285 208 39 108 chr6 16227259 16227667 -166187575 - MSTD LTR MaLR 0 396 17 1715 170 0 20 chr6 16227732 16228032 -166187210 + AluJb SINE Alu 1 294 -18 1959 155 0 0 chr6 16228300 16228610 -166186632 - AluSx SINE Alu -2 310 1 912 132 0 0 chr6 16228610 16228746 -166186496 - AluSq/x SINE Alu -176 136 1 254 301 165 8 chr6 16228747 16228880 -166186362 + MIR SINE MIR 96 249 -13 1504 180 14 4 chr6 16228933 16229231 -166186011 - AluJb SINE Alu 0 301 1 30 0 0 0 chr6 16229393 16229423 -166185819 + AT_rich Low_complexity Low_complexity 1 30 0 496 208 21 10 chr6 16230239 16230335 -166184907 + MER5A DNA MER1_type 16 112 -77 326 275 191 15 chr6 16230268 16230399 -166184843 - MER5A DNA MER1_type -32 157 4 * 328 164 0 0 chr6 16230659 16230714 -166184528 + AluJ SINE Alu 87 141 -161 2062 114 7 3 chr6 16230718 16231203 -166184039 + AluSc SINE Alu 1 309 0 1043 117 11 6 chr6 16230995 16231254 -166183988 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 856 179 13 0 chr6 16231254 16231410 -166183832 + AluJ SINE Alu 129 286 -26 538 178 59 20 chr6 16231416 16231517 -166183725 - AluJb SINE Alu -25 287 183 1612 152 21 28 chr6 16231517 16231807 -166183435 + AluJb SINE Alu 14 301 -11 23 0 0 0 chr6 16231813 16231836 -166183406 + AT_rich Low_complexity Low_complexity 1 23 0 193 298 0 0 chr6 16231884 16231931 -166183311 + L2 LINE L2 3262 3308 -5 826 57 0 0 chr6 16232082 16232187 -166183055 + AluY SINE Alu 1 105 -206 2114 108 7 0 chr6 16232796 16233093 -166182149 + AluSp SINE Alu 1 299 -14 1196 114 0 0 chr6 16233093 16233260 -166181982 + AluSq SINE Alu 135 301 -12 2189 101 0 0 chr6 16233459 16233757 -166181485 - AluSq SINE Alu -15 298 1 454 98 0 98 chr6 16233760 16233842 -166181400 - U3 snRNA snRNA -143 74 1 1854 142 30 0 chr6 16233860 16234039 -166181203 - AluJo SINE Alu -1 311 139 2114 109 6 10 chr6 16234039 16234352 -166180890 - AluSx SINE Alu 0 312 1 203 79 26 0 chr6 16234356 16234394 -166180848 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 1854 142 30 0 chr6 16234394 16234511 -166180731 - AluJo SINE Alu -175 137 1 1575 125 0 0 chr6 16235899 16236123 -166179119 - AluSx SINE Alu -88 224 1 2162 92 0 3 chr6 16236330 16236656 -166178586 - AluSg SINE Alu 0 325 1 305 0 50 0 chr6 16236658 16236698 -166178544 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 1402 196 11 25 chr6 16236698 16236984 -166178258 - AluJo SINE Alu -30 282 1 200 200 50 0 chr6 16237231 16237271 -166177971 + MIR SINE MIR 81 122 -140 891 118 0 37 chr6 16237307 16237443 -166177799 + FLAM_C SINE Alu 1 131 -2 1915 96 4 0 chr6 16237476 16237736 -166177506 - AluSc SINE Alu -12 297 37 565 85 0 64 chr6 16237736 16237830 -166177412 + FLAM_C SINE Alu 52 139 -4 195 293 80 13 chr6 16238109 16238184 -166177058 + MIR SINE MIR 109 188 -74 2039 115 3 7 chr6 16238338 16238634 -166176608 + AluSq SINE Alu 1 295 -18 2201 98 3 0 chr6 16238638 16238934 -166176308 + AluSp SINE Alu 1 297 -16 237 254 17 0 chr6 16238988 16239047 -166176195 + L1MC/D LINE L1 5574 5633 -2175 2300 94 0 0 chr6 16239076 16239375 -166175867 - AluSg SINE Alu -9 301 3 1410 109 5 0 chr6 16239930 16240132 -166175110 + AluSp SINE Alu 2 204 -109 2017 108 3 16 chr6 16240488 16240795 -166174447 + AluSx SINE Alu 5 307 -5 401 0 20 0 chr6 16240943 16240992 -166174250 + (TG)n Simple_repeat Simple_repeat 2 51 0 786 169 0 0 chr6 16241001 16241131 -166174111 - FLAM_C SINE Alu -2 131 2 2108 114 0 3 chr6 16241268 16241565 -166173677 + AluSc SINE Alu 1 296 -13 1976 191 22 37 chr6 16241696 16241848 -166173394 + MSTD LTR MaLR 1 154 -242 1731 159 11 0 chr6 16241848 16242131 -166173111 - AluJb SINE Alu -20 292 7 1976 191 22 37 chr6 16242131 16242307 -166172935 + MSTD LTR MaLR 154 325 -71 1869 118 37 0 chr6 16242307 16242608 -166172634 - AluSx SINE Alu 0 311 1 1976 191 22 37 chr6 16242608 16242679 -166172563 + MSTD LTR MaLR 325 396 0 795 186 0 0 chr6 16242774 16242898 -166172344 + FRAM SINE Alu 23 146 -30 2045 107 4 0 chr6 16242900 16243227 -166172015 - AluSq SINE Alu 0 328 1 1338 159 63 22 chr6 16244123 16244394 -166170848 - AluJb SINE Alu -30 282 1 653 162 0 8 chr6 16244452 16244569 -166170673 + FLAM_C SINE Alu 24 139 -4 1791 127 33 4 chr6 16244820 16245096 -166170146 - AluSx SINE Alu -28 284 1 1682 167 3 28 chr6 16245189 16245507 -166169735 + AluJb SINE Alu 2 311 -1 242 265 29 0 chr6 16245558 16245626 -166169616 - LTR16A LTR ERVL 0 450 381 1844 130 40 7 chr6 16245639 16245939 -166169303 + AluSq SINE Alu 1 310 -3 569 155 0 10 chr6 16245957 16246054 -166169188 + AluJb SINE Alu 206 301 -11 913 164 0 0 chr6 16246055 16246201 -166169041 - AluJo SINE Alu -30 282 137 182 207 0 0 chr6 16246201 16246230 -166169012 + L2 LINE L2 3249 3277 -36 742 273 90 60 chr6 16246334 16246634 -166168608 - MLT1G1 LTR MaLR -250 345 37 1988 101 6 52 chr6 16246705 16247032 -166168210 - AluSx SINE Alu 0 312 1 834 134 0 15 chr6 16247032 16247166 -166168076 - AluJo SINE Alu -178 134 3 2004 107 11 0 chr6 16248652 16248702 -166166540 + AluSg SINE Alu 1 49 -260 198 0 0 0 chr6 16248702 16248724 -166166518 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2004 107 11 0 chr6 16248724 16248979 -166166263 + AluSg SINE Alu 49 309 0 2072 115 0 0 chr6 16249166 16249461 -166165781 - AluSx SINE Alu -17 295 1 2065 102 3 0 chr6 16249678 16249971 -166165271 + AluSq SINE Alu 1 294 -19 230 145 145 48 chr6 16250040 16250102 -166165140 - MIR SINE MIR -109 153 86 732 165 0 30 chr6 16250259 16250392 -166164850 - FLAM_C SINE Alu -10 133 5 2479 62 0 0 chr6 16250420 16250725 -166164517 + AluY SINE Alu 2 306 -5 1767 155 0 23 chr6 16250931 16251241 -166164001 - AluJb SINE Alu -9 303 1 2243 77 3 3 chr6 16251326 16251675 -166163567 + AluSp SINE Alu 1 349 0 1712 159 14 0 chr6 16251812 16252095 -166163147 - AluSx SINE Alu -20 292 6 2133 100 0 32 chr6 16252156 16252466 -166162776 - AluSx SINE Alu 0 312 13 23 0 0 0 chr6 16252466 16252489 -166162753 + AT_rich Low_complexity Low_complexity 1 23 0 2034 125 3 28 chr6 16253302 16253621 -166161621 - AluSx SINE Alu -1 311 1 1078 194 0 37 chr6 16253737 16253953 -166161289 + AluJb SINE Alu 87 294 -18 2050 116 7 10 chr6 16254203 16254513 -166160729 - AluSx SINE Alu -3 309 1 2110 103 0 30 chr6 16255180 16255481 -166159761 + AluSg SINE Alu 1 292 -18 2048 119 0 0 chr6 16255537 16255823 -166159419 + AluSq SINE Alu 1 286 -27 195 42 0 0 chr6 16255826 16255850 -166159392 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 240 338 52 13 chr6 16255913 16255990 -166159252 - L2 LINE L2 0 3272 3193 893 113 0 23 chr6 16255991 16256124 -166159118 + FLAM_C SINE Alu 1 130 -3 375 307 35 0 chr6 16256176 16256290 -166158952 + MIR SINE MIR 47 164 -98 289 281 56 0 chr6 16256367 16256456 -166158786 - MIR SINE MIR -11 251 158 466 319 7 7 chr6 16256730 16256868 -166158374 - MIR SINE MIR -97 165 28 183 267 23 47 chr6 16257487 16257573 -166157669 + L3 LINE CR1 1346 1429 -148 518 231 28 66 chr6 16258679 16258965 -166156277 - L1MC5 LINE L1 -36 7925 7651 1585 160 4 4 chr6 16258980 16259248 -166155994 + AluJb SINE Alu 1 268 -44 2014 118 3 16 chr6 16259277 16259590 -166155652 + AluSg SINE Alu 1 309 -1 2235 89 0 3 chr6 16259593 16259924 -166155318 + AluY SINE Alu 1 311 0 1187 120 0 0 chr6 16259924 16260091 -166155151 + AluSg/x SINE Alu 134 300 -12 1883 162 3 3 chr6 16260101 16260415 -166154827 + L1MB3 LINE L1 5828 6141 -42 2187 74 27 3 chr6 16260415 16260712 -166154530 + AluSp SINE Alu 1 304 -9 2338 84 0 0 chr6 16260724 16261022 -166154220 + AluSq SINE Alu 1 298 -15 1177 128 11 0 chr6 16261037 16261217 -166154025 + AluSg/x SINE Alu 125 306 -6 631 260 113 40 chr6 16261282 16261549 -166153693 - L1MC5 LINE L1 -302 7659 7360 1651 141 22 59 chr6 16261549 16261869 -166153373 - AluSx SINE Alu 0 312 5 631 260 113 40 chr6 16261869 16261947 -166153295 - L1MC5 LINE L1 -601 7360 7289 1118 148 0 95 chr6 16262130 16262373 -166152869 - AluJb SINE Alu -6 306 87 1978 114 0 23 chr6 16262477 16262784 -166152458 + AluSx SINE Alu 1 300 -12 473 196 50 33 chr6 16263294 16263444 -166151798 + L1MC5 LINE L1 7786 7995 0 388 312 72 8 chr6 16263498 16263623 -166151619 + MIR SINE MIR 16 148 -60 187 328 17 0 chr6 16263632 16263690 -166151552 - MIR SINE MIR -3 259 201 2047 92 0 18 chr6 16264158 16264441 -166150801 + AluY SINE Alu 2 279 -32 318 26 0 0 chr6 16264443 16264482 -166150760 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2100 113 0 0 chr6 16264494 16264787 -166150455 + AluSx SINE Alu 1 293 -19 1971 130 16 7 chr6 16264798 16265105 -166150137 + AluSx SINE Alu 1 310 -2 1610 137 10 48 chr6 16265121 16265368 -166149874 - L1MB3 LINE L1 -261 5922 5667 1920 113 13 19 chr6 16265368 16265679 -166149563 + AluSc SINE Alu 1 309 0 2060 102 48 0 chr6 16265686 16265980 -166149262 + AluSx SINE Alu 1 308 -4 1610 137 10 48 chr6 16265980 16266016 -166149226 - L1MB3 LINE L1 -522 5661 5642 1987 125 0 0 chr6 16266308 16266587 -166148655 + AluSx SINE Alu 18 296 -16 288 111 0 0 chr6 16266599 16266644 -166148598 + (CA)n Simple_repeat Simple_repeat 2 46 0 770 153 0 62 chr6 16266648 16266792 -166148450 - AluJo SINE Alu -176 136 2 1749 180 0 0 chr6 16266801 16267106 -166148136 - AluJo SINE Alu -7 305 1 2296 74 0 3 chr6 16267529 16267828 -166147414 + AluY SINE Alu 1 298 -13 2207 108 0 10 chr6 16267924 16268221 -166147021 - AluSx SINE Alu -16 296 3 216 67 0 0 chr6 16268287 16268317 -166146925 + (TG)n Simple_repeat Simple_repeat 2 31 0 2256 106 0 3 chr6 16268521 16268823 -166146419 + AluSx SINE Alu 1 301 -11 3479 86 2 20 chr6 16318992 16319050 -166096192 - MER41A LTR ERV1 -63 491 433 2457 82 0 3 chr6 16319050 16319355 -166095887 + AluSp SINE Alu 1 304 -9 3479 86 2 20 chr6 16319355 16319796 -166095446 - MER41A LTR ERV1 -121 433 1 1196 229 20 0 chr6 16319874 16320123 -166095119 - AluJb SINE Alu -1 311 58 239 237 118 26 chr6 16320141 16320217 -166095025 - MLT1L LTR MaLR -327 288 206 235 316 0 13 chr6 16320272 16320351 -166094891 - MLT1L LTR MaLR -536 79 2 279 186 80 53 chr6 16320351 16320464 -166094778 - L2 LINE L2 -1226 2088 1973 719 122 9 9 chr6 16320464 16320579 -166094663 + FLAM_C SINE Alu 25 139 -4 1804 156 0 17 chr6 16320602 16320891 -166094351 + AluSq SINE Alu 29 312 -1 437 247 22 116 chr6 16320892 16321106 -166094136 - L2 LINE L2 -1321 1993 1807 2425 73 20 0 chr6 16321106 16321406 -166093836 - AluY SINE Alu -5 306 1 437 247 22 116 chr6 16321406 16321458 -166093784 - L2 LINE L2 -1507 1807 1752 655 283 83 5 chr6 16321590 16321815 -166093427 + MIR SINE MIR 9 250 -12 2162 96 7 7 chr6 16322407 16322700 -166092542 + AluSq SINE Alu 1 293 -20 2330 101 0 0 chr6 16322780 16323078 -166092164 + AluSg SINE Alu 1 298 -12 640 267 24 6 chr6 16323167 16323332 -166091910 + MIR SINE MIR 21 188 -74 534 163 0 0 chr6 16323566 16323676 -166091566 - AluJb SINE Alu 0 312 203 382 56 42 56 chr6 16323752 16323800 -166091442 - MLT1B LTR MaLR -2 388 341 1341 231 0 32 chr6 16323800 16324108 -166091134 - AluJo SINE Alu -14 298 1 2319 73 3 17 chr6 16324114 16324426 -166090816 - AluSp SINE Alu 0 308 1 382 56 42 56 chr6 16324426 16324440 -166090802 - MLT1B LTR MaLR -54 336 319 183 206 37 19 chr6 16324515 16324622 -166090620 + GA-rich Low_complexity Low_complexity 2 110 0 4882 84 14 50 chr6 16324654 16324745 -166090497 - LTR8 LTR ERV1 0 691 598 2445 86 3 10 chr6 16324745 16325059 -166090183 + AluSp SINE Alu 2 313 0 4882 84 14 50 chr6 16325059 16325104 -166090138 - LTR8 LTR ERV1 -93 598 553 2135 95 0 7 chr6 16325104 16325425 -166089817 - AluY SINE Alu 0 319 1 4882 84 14 50 chr6 16325425 16325680 -166089562 - LTR8 LTR ERV1 -138 553 290 2308 71 10 7 chr6 16325680 16325976 -166089266 - AluY SINE Alu -14 297 1 4882 84 14 50 chr6 16325976 16326298 -166088944 - LTR8 LTR ERV1 -401 290 1 2084 152 0 0 chr6 16326387 16326689 -166088553 + AluSq SINE Alu 1 302 -11 186 302 0 38 chr6 16326689 16326742 -166088500 - MIR SINE MIR -190 72 22 263 282 43 133 chr6 16326843 16326968 -166088274 + MIR3 SINE MIR 16 120 -88 2111 131 0 16 chr6 16326968 16327281 -166087961 - AluSx SINE Alu -4 308 1 263 282 43 133 chr6 16327281 16327343 -166087899 + MIR3 SINE MIR 120 186 -22 1991 145 0 0 chr6 16327481 16327784 -166087458 - AluSx SINE Alu 0 304 2 873 69 9 0 chr6 16327896 16328012 -166087230 - AluY SINE Alu -8 303 187 1080 175 0 0 chr6 16328714 16328880 -166086362 + AluJo SINE Alu 1 166 -146 3400 120 15 9 chr6 16328880 16329208 -166086034 + MER41A LTR ERV1 1 336 -218 2358 72 0 14 chr6 16329208 16329526 -166085716 + AluY SINE Alu 1 314 0 3400 120 15 9 chr6 16329526 16329721 -166085521 + MER41A LTR ERV1 336 528 -26 937 152 0 0 chr6 16329728 16329879 -166085363 + FRAM SINE Alu 1 40 0 198 103 0 0 chr6 16330787 16330816 -166084426 + (TA)n Simple_repeat Simple_repeat 2 30 0 2078 87 4 4 chr6 16330816 16331080 -166084162 - AluSp SINE Alu -49 264 1 2232 113 13 0 chr6 16331311 16331612 -166083630 - AluSx SINE Alu -4 308 4 549 269 223 20 chr6 16331693 16332083 -166083159 - L2 LINE L2 0 3313 2845 2079 106 29 26 chr6 16332083 16332256 -166082986 + MER41A LTR ERV1 1 172 -463 2327 92 20 0 chr6 16332256 16332560 -166082682 + AluSq SINE Alu 1 310 -3 2079 106 29 26 chr6 16332560 16332875 -166082367 + MER41A LTR ERV1 172 528 -107 683 262 102 67 chr6 16332894 16333013 -166082229 - L2 LINE L2 -593 2721 2608 2348 100 7 0 chr6 16333013 16333322 -166081920 + AluY SINE Alu 1 311 0 683 262 102 67 chr6 16333322 16333515 -166081727 - L2 LINE L2 -706 2608 2398 337 221 197 8 chr6 16333541 16333668 -166081574 + MIR SINE MIR 112 262 0 2002 69 127 22 chr6 16333709 16333984 -166081258 - AluSx SINE Alu -8 304 1 2137 124 0 10 chr6 16333998 16334296 -166080946 + AluSx SINE Alu 1 295 -17 578 222 0 8 chr6 16334502 16334619 -166080623 + MER63 DNA MER1_type 19 760 -76 292 263 26 0 chr6 16334617 16334693 -166080549 + MER63 DNA MER1_type 983 1060 0 * 2342 95 3 0 chr6 16334809 16335104 -166080138 + AluSq SINE Alu 1 296 -17 2482 74 0 0 chr6 16335110 16335449 -166079793 - AluY SINE Alu 0 339 1 325 289 0 89 chr6 16335453 16335588 -166079654 - L2 LINE L2 0 3272 3150 212 194 0 0 chr6 16335823 16335859 -166079383 + L2 LINE L2 3271 3306 -7 778 245 89 64 chr6 16335966 16336233 -166079009 + L1MC5 LINE L1 7391 7650 -311 2140 129 3 3 chr6 16336233 16336544 -166078698 - AluSq SINE Alu -2 311 1 778 245 89 64 chr6 16336544 16336790 -166078452 + L1MC5 LINE L1 7650 7917 -44 1473 185 50 4 chr6 16336793 16337074 -166078168 + AluJb SINE Alu 3 296 -16 2342 81 3 7 chr6 16337119 16337417 -166077825 - AluSp SINE Alu -16 297 1 1372 208 26 30 chr6 16337456 16337588 -166077654 + AluJb SINE Alu 1 132 -180 2042 103 65 7 chr6 16337588 16337880 -166077362 + AluSg SINE Alu 2 310 0 1372 208 26 30 chr6 16337880 16338050 -166077192 + AluJb SINE Alu 132 302 -10 2093 110 0 54 chr6 16338050 16338367 -166076875 + AluSx SINE Alu 1 300 -12 2119 112 3 17 chr6 16338385 16338681 -166076561 + AluSx SINE Alu 6 297 -15 2421 83 3 0 chr6 16338863 16339164 -166076078 - AluY SINE Alu -9 302 1 25 51 0 0 chr6 16339650 16339689 -166075553 + AT_rich Low_complexity Low_complexity 1 39 0 2064 107 7 20 chr6 16339718 16340017 -166075225 - AluSx SINE Alu -17 295 1 2196 103 13 0 chr6 16340224 16340525 -166074717 + AluSp SINE Alu 1 305 -8 2150 128 3 7 chr6 16340757 16341062 -166074180 + AluSq SINE Alu 1 304 -9 2069 129 26 22 chr6 16341077 16341205 -166074037 + AluSx SINE Alu 1 127 -185 2389 82 3 0 chr6 16341205 16341508 -166073734 + AluY SINE Alu 1 304 -7 2069 129 26 22 chr6 16341508 16341690 -166073552 + AluSx SINE Alu 127 312 0 246 136 0 167 chr6 16341699 16341765 -166073477 - MLT1G1 LTR MaLR 0 595 541 1090 156 31 0 chr6 16341974 16342134 -166073108 - AluJo SINE Alu -13 299 135 2446 87 0 13 chr6 16342188 16342499 -166072743 - AluSx SINE Alu -4 308 2 309 218 85 20 chr6 16342499 16342616 -166072626 - MLT1E LTR MaLR -379 176 55 187 315 65 82 chr6 16342770 16342923 -166072319 - L2 LINE L2 -639 2675 2525 2377 71 0 0 chr6 16342923 16343252 -166071990 + AluY SINE Alu 2 330 0 187 315 65 82 chr6 16343252 16343329 -166071913 - L2 LINE L2 -789 2525 2448 824 171 0 0 chr6 16343349 16343466 -166071776 - AluJo SINE Alu -185 127 11 2691 35 0 10 chr6 16344267 16344581 -166070661 + AluY SINE Alu 1 311 0 2256 87 17 0 chr6 16344716 16345004 -166070238 - AluSp SINE Alu -20 293 1 448 97 0 0 chr6 16345236 16345308 -166069934 - AluSp/q SINE Alu -2 311 240 742 161 12 54 chr6 16345443 16345611 -166069631 - BC200 scRNA scRNA -38 162 2 1193 88 23 23 chr6 16346027 16346198 -166069044 - AluY SINE Alu -7 304 134 728 143 36 0 chr6 16346376 16346488 -166068754 + AluJb SINE Alu 2 117 -195 188 228 11 109 chr6 16346620 16346712 -166068530 - L2 LINE L2 -70 3243 3161 2290 103 13 0 chr6 16346747 16347047 -166068195 + AluSc SINE Alu 1 304 -5 2134 128 13 0 chr6 16347128 16347426 -166067816 + AluSx SINE Alu 1 302 -10 543 241 69 52 chr6 16347525 16347699 -166067543 - MER5A DNA MER1_type -6 183 7 2202 128 3 3 chr6 16347797 16348109 -166067133 - AluSx SINE Alu 0 312 1 358 164 60 0 chr6 16348253 16348320 -166066922 + AluJ/FLAM SINE Alu 1 71 -231 2340 97 10 0 chr6 16348320 16348618 -166066624 - AluSx SINE Alu -11 301 1 2031 124 28 0 chr6 16348618 16348908 -166066334 - AluSx SINE Alu -14 298 1 233 191 0 0 chr6 16349765 16349807 -166065435 + Alu SINE Alu 1 42 -91 258 311 142 0 chr6 16349928 16350005 -166065237 - L2 LINE L2 0 3313 3216 2029 139 23 0 chr6 16350005 16350308 -166064934 + AluSx SINE Alu 1 310 -2 258 311 142 0 chr6 16350308 16350336 -166064906 - L2 LINE L2 -97 3216 3193 381 265 41 0 chr6 16350353 16350451 -166064791 + MER81 DNA DNA 1 102 -12 1097 162 0 17 chr6 16350479 16350652 -166064590 + AluJo SINE Alu 1 170 -142 1151 112 0 0 chr6 16350654 16350833 -166064409 - AluSq SINE Alu 0 310 132 1906 127 4 0 chr6 16350833 16351129 -166064113 + AluSx SINE Alu 26 322 0 2477 71 0 0 chr6 16351131 16351427 -166063815 + AluY SINE Alu 1 296 -15 1028 165 12 0 chr6 16351427 16351591 -166063651 + AluJb SINE Alu 134 299 -13 498 236 132 0 chr6 16351592 16351698 -166063544 - FLAM_A SINE Alu -13 120 1 28 29 0 0 chr6 16351812 16351847 -166063395 + AT_rich Low_complexity Low_complexity 1 35 0 2092 148 3 0 chr6 16351853 16352163 -166063079 - AluSx SINE Alu -1 311 1 2421 72 0 37 chr6 16352221 16352542 -166062700 + AluY SINE Alu 1 309 -2 1817 158 15 0 chr6 16352547 16352819 -166062423 - AluJo SINE Alu -36 276 1 1801 171 8 40 chr6 16352824 16353002 -166062240 - MLT1B LTR MaLR -44 346 164 2305 92 0 20 chr6 16353002 16353308 -166061934 - AluSg SINE Alu -10 300 1 1604 158 10 65 chr6 16353308 16353476 -166061766 - AluJo SINE Alu -15 297 152 1975 126 28 0 chr6 16353476 16353762 -166061480 - AluSp SINE Alu -19 294 1 1604 158 10 65 chr6 16353762 16353903 -166061339 - AluJo SINE Alu -160 152 5 1801 171 8 40 chr6 16353903 16354075 -166061167 - MLT1B LTR MaLR -224 166 6 746 191 8 0 chr6 16354165 16354291 -166060951 + AluJo/FLAM SINE Alu 1 127 -185 2140 125 0 0 chr6 16354292 16354587 -166060655 - AluY SINE Alu -16 295 1 489 233 112 0 chr6 16354593 16354709 -166060533 - FLAM_A SINE Alu -4 129 1 1457 177 0 110 chr6 16354946 16355105 -166060137 - AluJb SINE Alu -20 292 117 2197 110 0 7 chr6 16355105 16355396 -166059846 - AluSg1 SINE Alu -18 291 3 1457 177 0 110 chr6 16355396 16355468 -166059774 - AluJb SINE Alu -195 117 105 2458 90 3 0 chr6 16355468 16355779 -166059463 - AluSp SINE Alu 0 313 2 1457 177 0 110 chr6 16355779 16355874 -166059368 - AluJb SINE Alu -207 105 1 217 242 113 16 chr6 16355875 16355937 -166059305 - L2 LINE L2 0 3272 3205 939 158 35 23 chr6 16356290 16356461 -166058781 - FRAM SINE Alu -10 166 1 1819 141 0 89 chr6 16356466 16356656 -166058586 - AluSq SINE Alu -15 298 147 2158 103 13 16 chr6 16356656 16356968 -166058274 - AluY SINE Alu 0 311 1 1819 141 0 89 chr6 16356968 16357104 -166058138 - AluSq SINE Alu -166 147 1 2837 157 49 33 chr6 16357127 16357644 -166057598 - MER21A LTR ERV1 0 931 403 1638 169 3 50 chr6 16357644 16357824 -166057418 - AluJo SINE Alu -5 307 147 1981 137 3 20 chr6 16357824 16358124 -166057118 - AluSx SINE Alu -15 297 3 1638 169 3 50 chr6 16358124 16358263 -166056979 - AluJo SINE Alu -165 147 3 2837 157 49 33 chr6 16358263 16358292 -166056950 - MER21A LTR ERV1 -528 403 376 944 206 0 0 chr6 16358373 16358543 -166056699 + FRAM SINE Alu 2 171 -5 639 122 7 109 chr6 16358545 16358589 -166056653 - MER21A LTR ERV1 -748 183 136 2239 84 7 32 chr6 16358589 16358898 -166056344 + AluSp SINE Alu 1 301 -12 639 122 7 109 chr6 16358898 16359000 -166056242 - MER21A LTR ERV1 -795 136 52 1343 153 0 31 chr6 16359001 16359229 -166056013 + AluJb SINE Alu 1 221 -91 356 269 32 0 chr6 16359267 16359360 -166055882 - MIR3 SINE MIR -2 206 111 2367 98 3 3 chr6 16359574 16359880 -166055362 - AluSp SINE Alu -7 306 1 2316 103 0 0 chr6 16359887 16360178 -166055064 - AluSg SINE Alu -19 291 1 21 0 0 0 chr6 16360178 16360199 -166055043 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr6 16360721 16360744 -166054498 + (TA)n Simple_repeat Simple_repeat 2 24 0 195 42 0 0 chr6 16360744 16360768 -166054474 + (T)n Simple_repeat Simple_repeat 1 24 0 2092 118 14 0 chr6 16360846 16361142 -166054100 - AluSx SINE Alu -12 300 1 314 281 152 18 chr6 16361220 16361391 -166053851 + MLT1K LTR MaLR 395 588 0 2231 96 7 13 chr6 16362298 16362601 -166052641 - AluSg SINE Alu -9 301 1 2431 87 3 0 chr6 16362607 16362907 -166052335 - AluSp SINE Alu -12 301 1 480 286 44 28 chr6 16363154 16363336 -166051906 + MIR SINE MIR 34 218 -44 882 150 7 29 chr6 16363580 16363720 -166051522 - AluJo SINE Alu -175 137 1 247 318 12 12 chr6 16363721 16363806 -166051436 - MIR SINE MIR -57 151 67 1839 143 13 54 chr6 16363933 16364247 -166050995 - AluJb SINE Alu -11 301 1 180 0 0 0 chr6 16364841 16364861 -166050381 + (T)n Simple_repeat Simple_repeat 1 20 0 268 308 108 17 chr6 16365797 16365917 -166049325 - MIR SINE MIR -112 150 20 212 239 0 33 chr6 16366959 16367051 -166048191 + G-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr6 16367808 16367834 -166047408 + (CCG)n Simple_repeat Simple_repeat 3 28 0 209 208 28 69 chr6 16370008 16370152 -166045090 + (CGGG)n Simple_repeat Simple_repeat 3 140 0 218 164 0 16 chr6 16370167 16370228 -166045014 + G-rich Low_complexity Low_complexity 3 62 0 21 0 0 0 chr6 16370295 16370316 -166044926 + GC_rich Low_complexity Low_complexity 1 21 0 200 253 0 27 chr6 16370387 16370462 -166044780 + C-rich Low_complexity Low_complexity 2 74 0 200 241 36 12 chr6 16370596 16370679 -166044563 + G-rich Low_complexity Low_complexity 3 87 0 1858 128 30 16 chr6 16372777 16373082 -166042160 - AluSx SINE Alu -3 309 1 1741 79 0 4 chr6 16373467 16373694 -166041548 + AluSg SINE Alu 5 230 -80 721 132 8 25 chr6 16373699 16373820 -166041422 + AluSg/x SINE Alu 170 288 -21 1997 108 0 14 chr6 16374834 16375129 -166040113 - AluSg SINE Alu -19 291 1 1570 99 22 13 chr6 16376524 16376756 -166038486 + AluSq SINE Alu 1 234 -79 180 97 0 0 chr6 16376771 16376802 -166038440 + (A)n Simple_repeat Simple_repeat 1 31 0 482 82 14 0 chr6 16376902 16376975 -166038267 - AluSc SINE Alu -6 303 230 1498 82 0 0 chr6 16376975 16377169 -166038073 - AluSc SINE Alu -115 194 1 278 273 112 62 chr6 16377736 16377897 -166037345 + MIR SINE MIR 76 244 -18 223 287 47 62 chr6 16378767 16378896 -166036346 - MIR SINE MIR -66 142 16 418 298 180 39 chr6 16379117 16379500 -166035742 - L1ME4a LINE L1 -159 5962 5526 412 222 116 86 chr6 16380068 16380266 -166034976 + MIR SINE MIR 21 224 -38 2214 99 0 0 chr6 16380268 16380562 -166034680 + AluSg SINE Alu 1 294 -16 2062 98 0 25 chr6 16383069 16383386 -166031856 - AluSc SINE Alu 0 309 1 2109 98 10 3 chr6 16383551 16383846 -166031396 - AluSg SINE Alu -13 297 1 355 208 3 67 chr6 16383935 16384042 -166031200 - AluJb SINE Alu -161 141 56 1534 171 44 32 chr6 16384042 16384300 -166030942 - L1MB7 LINE L1 -197 5987 5723 2078 78 34 20 chr6 16384300 16384595 -166030647 - AluSg SINE Alu -11 299 1 1534 171 44 32 chr6 16384595 16384680 -166030562 - L1MB7 LINE L1 -461 5723 5640 444 19 0 0 chr6 16384832 16384885 -166030357 + (TG)n Simple_repeat Simple_repeat 1 53 0 2360 76 0 0 chr6 16385358 16385659 -166029583 - AluSx SINE Alu -11 301 1 904 175 0 6 chr6 16385664 16385830 -166029412 - AluJb SINE Alu -17 295 131 282 29 0 0 chr6 16386373 16386408 -166028834 + (TG)n Simple_repeat Simple_repeat 1 35 0 237 33 0 0 chr6 16386407 16386437 -166028805 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1214 128 29 166 chr6 16391129 16391473 -166023769 - AluJo SINE Alu -5 297 1 210 160 0 0 chr6 16391865 16391915 -166023327 + (TCCG)n Simple_repeat Simple_repeat 3 52 0 1981 111 4 0 chr6 16391918 16392198 -166023044 - AluSp SINE Alu -32 281 1 1747 152 30 3 chr6 16392433 16392735 -166022507 + AluSx SINE Alu 1 310 -2 212 224 282 12 chr6 16393029 16393114 -166022128 + MER5A DNA MER1_type 43 150 -39 * 318 226 16 0 chr6 16393055 16393117 -166022125 - MER5A DNA MER1_type -80 109 47 1414 157 3 124 chr6 16393294 16393484 -166021758 + AluJo SINE Alu 1 134 -168 1979 113 0 0 chr6 16393484 16393759 -166021483 + AluSx SINE Alu 1 275 -37 1414 157 3 124 chr6 16393759 16393906 -166021336 + AluJo SINE Alu 134 297 -5 253 296 141 56 chr6 16394231 16394373 -166020869 - MIR SINE MIR -1 261 108 343 74 0 56 chr6 16394520 16394574 -166020668 + MIR SINE MIR 110 160 -102 2082 105 3 0 chr6 16395186 16395494 -166019748 + AluSp SINE Alu 1 309 0 2119 100 0 3 chr6 16395697 16395996 -166019246 - AluSx SINE Alu -14 298 1 24 0 0 0 chr6 16397288 16397312 -166017930 + GC_rich Low_complexity Low_complexity 1 24 0 852 138 0 0 chr6 16399063 16399186 -166016056 - FLAM_C SINE Alu -16 127 5 1138 99 152 0 chr6 16399732 16399903 -166015339 + AluSx SINE Alu 1 197 -115 598 184 39 0 chr6 16499923 16500026 -165915216 - U6 snRNA snRNA 0 107 1 1147 191 89 68 chr6 16500046 16500339 -165914903 - AluJo SINE Alu 0 302 4 1588 217 99 14 chr6 16501232 16501665 -165913577 + Charlie1b DNA MER1_type 1 470 -53 249 240 219 0 chr6 16501677 16501773 -165913469 - L1MC5 LINE L1 -91 7870 7754 1185 195 61 12 chr6 16501798 16502044 -165913198 - AluJo SINE Alu -54 258 1 1698 186 3 0 chr6 16502058 16502353 -165912889 - AluSx SINE Alu -15 297 2 492 163 0 0 chr6 16502797 16502877 -165912365 - AluJ/FRAM SINE Alu -12 300 221 333 118 0 0 chr6 16503082 16503133 -165912109 + (TG)n Simple_repeat Simple_repeat 1 51 0 231 225 38 75 chr6 16503856 16503936 -165911306 - MIR SINE MIR -13 249 173 233 290 30 53 chr6 16503965 16504096 -165911146 + MIR SINE MIR 95 222 -40 1765 182 19 10 chr6 16506610 16506918 -165908324 + AluJb SINE Alu 1 311 -1 494 171 19 38 chr6 16507024 16507129 -165908113 + L1MC2 LINE L1 6060 6162 -182 1754 86 189 0 chr6 16507137 16507381 -165907861 + AluSp SINE Alu 1 290 -13 369 161 195 0 chr6 16507392 16507479 -165907763 + Tigger7 DNA MER2_type 9 112 -621 1491 158 62 121 chr6 16508413 16508484 -165906758 - L1MB7 LINE L1 0 6184 6110 2410 50 33 3 chr6 16508484 16508784 -165906458 - AluY SINE Alu -1 310 2 1491 158 62 121 chr6 16508784 16509110 -165906132 - L1MB7 LINE L1 -74 6110 5815 785 158 0 8 chr6 16509110 16509243 -165905999 - L1MB4 LINE L1 -6 6174 6043 1491 158 62 121 chr6 16509243 16509299 -165905943 - L1MB7 LINE L1 -369 5815 5757 1997 141 6 10 chr6 16510640 16510953 -165904289 - AluSx SINE Alu 0 312 1 1334 186 61 11 chr6 16511369 16511633 -165903609 + AluJo SINE Alu 6 282 -30 348 83 0 0 chr6 16511639 16511687 -165903555 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 680 137 23 61 chr6 16512261 16512392 -165902850 - FLAM_C SINE Alu -8 135 10 253 132 0 0 chr6 16512567 16512605 -165902637 - LTR1 LTR ERV1 0 785 748 13319 153 41 33 chr6 16512719 16515092 -165900150 + HUERS-P2 LTR ERV1 208 2679 -409 2260 91 10 0 chr6 16515092 16515388 -165899854 - AluSp SINE Alu -14 299 1 13319 153 41 33 chr6 16515388 16515518 -165899724 + HUERS-P2 LTR ERV1 2679 2806 -282 1084 167 0 0 chr6 16515519 16515693 -165899549 - AluSg/x SINE Alu -18 292 119 199 192 0 25 chr6 16515827 16515873 -165899369 - MIR SINE MIR -63 145 105 2100 98 9 68 chr6 16518479 16518804 -165896438 + AluSq SINE Alu 1 306 -7 234 0 0 0 chr6 16519658 16519684 -165895558 + (T)n Simple_repeat Simple_repeat 1 26 0 324 182 83 58 chr6 16520030 16520151 -165895091 - L1MB8 LINE L1 -9 6169 6046 21 0 0 0 chr6 16520391 16520412 -165894830 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 16521128 16521161 -165894081 + AT_rich Low_complexity Low_complexity 1 33 0 269 246 0 16 chr6 16521433 16521494 -165893748 + MIR SINE MIR 43 102 -160 2079 124 7 0 chr6 16522293 16522583 -165892659 - AluSg SINE Alu -14 296 5 1057 163 54 128 chr6 16523280 16523593 -165891649 - AluJb SINE Alu -11 291 2 25 53 0 18 chr6 16523608 16523637 -165891605 + AT_rich Low_complexity Low_complexity 1 30 -26 2283 108 0 0 chr6 16523637 16523943 -165891299 - AluSg SINE Alu -4 306 1 25 53 0 18 chr6 16523943 16523970 -165891272 + AT_rich Low_complexity Low_complexity 30 56 0 25 0 0 0 chr6 16524019 16524044 -165891198 + AT_rich Low_complexity Low_complexity 1 25 0 808 271 114 41 chr6 16526115 16526555 -165888687 + HsTC2 DNA Tc2 105 576 -1322 226 235 174 0 chr6 16527000 16527098 -165888144 + MIR SINE MIR 36 150 -58 1887 198 52 20 chr6 16528429 16528888 -165886354 - L1MB8 LINE L1 -344 5834 5361 1502 204 96 18 chr6 16529624 16530020 -165885222 + MLT1D LTR MaLR 79 505 0 238 181 179 14 chr6 16530151 16530238 -165885004 - MIR SINE MIR -71 137 38 183 100 50 50 chr6 16530416 16530456 -165884786 - L2 LINE L2 -218 3054 3015 180 0 0 0 chr6 16530767 16530787 -165884455 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 1583 202 84 46 chr6 16531078 16531171 -165884071 - L1MB5 LINE L1 -17 6157 6069 1951 147 3 0 chr6 16531171 16531464 -165883778 - AluSx SINE Alu -18 294 1 1583 202 84 46 chr6 16531464 16531899 -165883343 - L1MB5 LINE L1 -105 6069 5577 942 253 169 27 chr6 16531486 16532011 -165883231 - L1MC4 LINE L1 -1993 6049 5450 * 2113 133 10 0 chr6 16532286 16532594 -165882648 + AluSx SINE Alu 1 311 -1 1615 166 95 0 chr6 16535257 16535540 -165879702 - AluSq SINE Alu -3 310 1 31 58 0 0 chr6 16535694 16535746 -165879496 + AT_rich Low_complexity Low_complexity 1 52 0 1958 124 14 21 chr6 16535746 16536036 -165879206 - AluSg SINE Alu -22 288 1 1363 197 3 72 chr6 16536038 16536358 -165878884 - AluJo SINE Alu -14 298 1 559 274 181 0 chr6 16536658 16536950 -165878292 + L2 LINE L2 2429 2773 -541 1748 156 44 3 chr6 16537446 16537741 -165877501 - AluSx SINE Alu -5 307 1 271 192 19 0 chr6 16538821 16538873 -165876369 + MER5A DNA MER1_type 1 53 -136 183 250 0 0 chr6 16538902 16538950 -165876292 + MER5A DNA MER1_type 132 179 -10 743 224 87 20 chr6 16540325 16540521 -165874721 + MER3 DNA MER1_type 1 209 0 195 125 0 0 chr6 16542052 16542092 -165873150 + (G)n Simple_repeat Simple_repeat 1 40 0 211 268 14 0 chr6 16542750 16542821 -165872421 - L3 LINE CR1 -166 1411 1340 271 289 24 12 chr6 16544129 16544212 -165871030 + L3 LINE CR1 1127 1210 -367 290 261 231 0 chr6 16544420 16544554 -165870688 - MER5A DNA MER1_type 0 189 25 334 200 60 10 chr6 16545671 16545771 -165869471 - L2 LINE L2 -4 3268 3164 2299 61 16 39 chr6 16545884 16546194 -165869048 - AluY SINE Alu -8 303 1 1968 114 21 11 chr6 16547926 16548207 -165867035 - AluSg SINE Alu -26 284 1 2108 136 3 0 chr6 16548251 16548560 -165866682 - AluSg SINE Alu 0 310 1 1738 164 0 27 chr6 16551992 16552284 -165862958 + AluJo SINE Alu 6 289 -23 254 290 14 0 chr6 16552500 16552569 -165862673 + (TG)n Simple_repeat Simple_repeat 1 70 0 2227 89 123 0 chr6 16552699 16553015 -165862227 - THE1A LTR MaLR 0 355 1 951 132 0 0 chr6 16553053 16553182 -165862060 - AluSg SINE Alu -46 266 138 263 132 0 118 chr6 16553182 16553250 -165861992 + AluJo SINE Alu 94 153 -149 849 132 0 0 chr6 16553254 16553375 -165861867 - AluSg SINE Alu -179 131 11 2183 109 3 13 chr6 16553428 16553740 -165861502 - AluSc SINE Alu 0 309 1 25 0 0 0 chr6 16553743 16553768 -165861474 + AT_rich Low_complexity Low_complexity 1 25 0 228 304 0 88 chr6 16554108 16554210 -165861032 - MIR SINE MIR -95 113 21 418 238 186 26 chr6 16555226 16555419 -165859823 - MIR SINE MIR -18 244 21 2013 123 3 14 chr6 16555603 16555888 -165859354 - AluSx SINE Alu -30 282 1 193 54 0 54 chr6 16556564 16556601 -165858641 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2227 48 62 24 chr6 16556625 16556917 -165858325 + AluY SINE Alu 1 303 -8 429 179 123 49 chr6 16557349 16557511 -165857731 - MER104 DNA Tc2 0 180 7 1942 112 76 0 chr6 16557555 16557832 -165857410 + AluSg SINE Alu 1 298 -12 251 234 13 26 chr6 16558109 16558186 -165857056 - MIR3 SINE MIR -7 201 126 672 217 16 0 chr6 16558722 16558851 -165856391 - FLAM_A SINE Alu -1 132 2 382 270 123 10 chr6 16558936 16559140 -165856102 + L2 LINE L2 1584 1810 -1504 2234 104 13 0 chr6 16559349 16559647 -165855595 - AluSp SINE Alu -11 302 1 1169 186 53 0 chr6 16559649 16559875 -165855367 - AluJo SINE Alu -9 303 66 248 259 43 86 chr6 16559944 16560106 -165855136 + L2 LINE L2 2323 2477 -837 1035 181 111 48 chr6 16560145 16560415 -165854827 - AluJb SINE Alu -14 298 12 270 343 97 23 chr6 16560468 16560978 -165854264 + L2 LINE L2 2562 3149 -164 50 71 0 0 chr6 16561018 16561117 -165854125 + AT_rich Low_complexity Low_complexity 1 99 0 293 319 0 14 chr6 16561690 16561804 -165853438 - MIR SINE MIR -97 111 3 240 184 0 0 chr6 16561804 16561853 -165853389 + CT-rich Low_complexity Low_complexity 6 54 0 189 74 0 0 chr6 16561858 16561885 -165853357 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 202 123 97 chr6 16562040 16562175 -165853067 - FLAM_C SINE Alu 0 138 1 691 222 247 45 chr6 16562853 16563145 -165852097 - MLT1B LTR MaLR 0 390 24 231 165 24 35 chr6 16564126 16564211 -165851031 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 849 177 39 28 chr6 16564747 16564928 -165850314 - AluJb SINE Alu -45 267 85 375 23 0 0 chr6 16567593 16567637 -165847605 + (TG)n Simple_repeat Simple_repeat 2 45 0 627 241 31 42 chr6 16568113 16568234 -165847008 + MER3 DNA MER1_type 5 125 -84 2132 122 3 10 chr6 16568234 16568538 -165846704 - AluSq SINE Alu -11 302 1 627 241 31 42 chr6 16568538 16568607 -165846635 + MER3 DNA MER1_type 125 193 -16 255 194 56 14 chr6 16569234 16569306 -165845936 + L1ME4a LINE L1 5964 6038 -83 1330 186 68 21 chr6 16569886 16570166 -165845076 + AluJb SINE Alu 4 296 -16 226 286 48 0 chr6 16570704 16570767 -165844475 - L1ME LINE L1 -537 5584 5519 1569 124 120 8 chr6 16570868 16571118 -165844124 - AluY SINE Alu -33 278 1 988 109 0 0 chr6 16571121 16571249 -165843993 - AluSp SINE Alu -181 132 5 1820 124 4 4 chr6 16571250 16571508 -165843734 - AluSc SINE Alu -43 266 9 209 147 0 0 chr6 16571892 16571926 -165843316 - MIR SINE MIR -113 149 116 21 0 0 0 chr6 16572022 16572043 -165843199 + AT_rich Low_complexity Low_complexity 1 21 0 612 184 0 9 chr6 16572054 16572168 -165843074 - Tigger7 DNA MER2_type 0 2487 2375 821 213 63 6 chr6 16572183 16572357 -165842885 - Tigger7 DNA MER2_type -519 186 3 406 273 48 94 chr6 16573237 16573611 -165841631 + L1ME3A LINE L1 5532 5888 -282 263 303 10 10 chr6 16574870 16574969 -165840273 + MIR3 SINE MIR 76 174 -34 204 214 0 0 chr6 16575040 16575096 -165840146 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 207 237 34 0 chr6 16575216 16575275 -165839967 + MIR SINE MIR 157 217 -45 226 239 0 0 chr6 16576438 16576484 -165838758 + CT-rich Low_complexity Low_complexity 2 47 0 198 0 0 0 chr6 16577452 16577474 -165837768 + (T)n Simple_repeat Simple_repeat 1 22 0 486 0 0 0 chr6 16580073 16580127 -165835115 + (CA)n Simple_repeat Simple_repeat 1 54 0 2161 114 0 0 chr6 16581707 16581988 -165833254 + AluSc SINE Alu 1 281 -28 1353 177 32 35 chr6 16582531 16582814 -165832428 + AluJo SINE Alu 1 282 -30 212 186 0 66 chr6 16582841 16582944 -165832298 + MER5A DNA MER1_type 20 188 -1 1859 157 42 0 chr6 16583535 16583822 -165831420 + AluJo SINE Alu 1 299 -13 565 229 199 19 chr6 16584077 16584344 -165830898 - MER33 DNA MER1_type -1 323 9 281 344 39 0 chr6 16585968 16586096 -165829146 - Charlie8 DNA MER1_type -2208 209 77 1870 152 22 4 chr6 16587879 16588155 -165827087 - AluSx SINE Alu -30 282 2 2294 89 23 0 chr6 16588562 16588865 -165826377 - AluSp SINE Alu -2 311 2 694 236 46 6 chr6 16588953 16589127 -165826115 - MSTD LTR MaLR 0 396 216 748 196 5 73 chr6 16589137 16589341 -165825901 - AluJo SINE Alu 0 312 123 970 142 13 7 chr6 16589341 16589496 -165825746 - MSTD LTR MaLR -237 159 4 21 82 0 0 chr6 16590318 16590367 -165824875 + AT_rich Low_complexity Low_complexity 1 49 0 6315 79 9 61 chr6 16590368 16591373 -165823869 - SVA Other Other -1 1385 433 5919 62 22 66 chr6 16591390 16592296 -165822946 - SVA Other Other -520 866 1 350 260 29 0 chr6 16592881 16592985 -165822257 + MIR SINE MIR 91 197 -65 1577 186 7 20 chr6 16593009 16593304 -165821938 + AluJb SINE Alu 1 291 -21 2069 94 20 10 chr6 16593770 16594068 -165821174 - AluSc SINE Alu -8 301 1 303 207 117 69 chr6 16595011 16595156 -165820086 - L1MEc LINE L1 -4646 1750 1599 2177 282 167 27 chr6 16595178 16595693 -165819549 - L1MEc LINE L1 -4759 1637 1196 2232 83 11 0 chr6 16595693 16595970 -165819272 + AluSg SINE Alu 18 297 -13 2177 282 167 27 chr6 16595970 16596881 -165818361 - L1MEc LINE L1 -5200 1196 11 1725 167 10 19 chr6 16598539 16598851 -165816391 - AluJb SINE Alu -3 309 1 822 165 0 0 chr6 16599688 16599821 -165815421 - FLAM_C SINE Alu 0 133 1 2199 98 0 3 chr6 16600129 16600444 -165814798 + AluSp SINE Alu 1 314 0 394 252 0 66 chr6 16600451 16600602 -165814640 - MIR SINE MIR -10 252 112 1179 205 151 29 chr6 16600982 16601333 -165813909 + MSTD LTR MaLR 1 394 -2 2669 49 0 6 chr6 16603830 16604157 -165811085 - L1PA5 LINE L1 -8 6146 5822 2146 134 0 0 chr6 16604178 16604484 -165810758 + AluSx SINE Alu 2 307 -5 1572 184 7 32 chr6 16604808 16605118 -165810124 - AluJo SINE Alu -6 306 5 1307 83 47 156 chr6 16607584 16607700 -165807542 - MER51A LTR ERV1 0 634 507 1775 155 14 4 chr6 16607700 16607977 -165807265 + AluSx SINE Alu 1 280 -32 1307 83 47 156 chr6 16607977 16607999 -165807243 - MER51A LTR ERV1 -127 507 484 291 28 0 0 chr6 16607999 16608035 -165807207 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1307 83 47 156 chr6 16608035 16608171 -165807071 - MER51A LTR ERV1 -150 484 389 457 101 157 22 chr6 16608227 16608316 -165806926 - MER51A LTR ERV1 -529 105 5 967 212 0 11 chr6 16608456 16608645 -165806597 - MER5A DNA MER1_type 0 189 3 369 0 0 0 chr6 16608964 16609005 -165806237 + (TG)n Simple_repeat Simple_repeat 2 42 0 450 0 0 0 chr6 16609475 16609525 -165805717 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 0 0 0 chr6 16609693 16609720 -165805522 + AT_rich Low_complexity Low_complexity 1 27 0 258 364 130 5 chr6 16610759 16610943 -165804299 - L1MEd LINE L1 -5456 663 457 28 0 0 0 chr6 16611263 16611291 -165803951 + AT_rich Low_complexity Low_complexity 1 28 0 3732 134 96 23 chr6 16611479 16612211 -165803031 - LTR1 LTR ERV1 0 785 1 313 218 20 59 chr6 16613117 16613218 -165802024 - MER34 LTR ERV1 -14 528 432 881 74 0 0 chr6 16613266 16613374 -165801868 + AluSc SINE Alu 190 297 -12 2129 123 0 10 chr6 16614300 16614602 -165800640 + AluSx SINE Alu 1 299 -13 1756 83 46 12 chr6 16617319 16617592 -165797650 - AluSq SINE Alu 0 313 44 198 0 0 0 chr6 16620289 16620311 -165794931 + (T)n Simple_repeat Simple_repeat 1 22 0 404 221 147 32 chr6 16624383 16624573 -165790669 + MER5C DNA MER1_type 77 288 -36 1475 158 15 85 chr6 16624917 16625247 -165789995 + AluJo SINE Alu 1 307 -5 2367 98 0 0 chr6 16625716 16626022 -165789220 - AluSq SINE Alu -6 307 2 1788 103 0 66 chr6 16626419 16626690 -165788552 + AluSx SINE Alu 1 253 -59 219 36 0 0 chr6 16626693 16626721 -165788521 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr6 16628541 16628576 -165786666 + AT_rich Low_complexity Low_complexity 1 35 0 1199 252 121 34 chr6 16628611 16629175 -165786067 - L1MC4 LINE L1 -184 7858 7246 * 1455 226 55 30 chr6 16629159 16629693 -165785549 - L1MC4 LINE L1 -800 7080 6455 1445 158 6 76 chr6 16630016 16630332 -165784910 - AluJo SINE Alu -13 299 6 633 233 25 0 chr6 16630602 16630765 -165784477 + FRAM SINE Alu 1 165 -11 1331 118 126 0 chr6 16630816 16631054 -165784188 - L1MA5A LINE L1 0 6297 6030 2345 78 14 0 chr6 16631097 16631380 -165783862 - AluSx SINE Alu -24 288 2 342 236 186 67 chr6 16632444 16632804 -165782438 - L1ME4a LINE L1 0 6121 5719 222 267 35 12 chr6 16634615 16634701 -165780541 + MIR SINE MIR 90 177 -85 1675 188 24 18 chr6 16634759 16635100 -165780142 + MER2 DNA MER2_type 2 344 0 2155 103 0 14 chr6 16636234 16636558 -165778684 - AluSx SINE Alu 0 320 1 236 304 0 0 chr6 16637741 16637820 -165777422 - MER113 DNA MER1_type? -442 79 1 2076 148 0 3 chr6 16638974 16639285 -165775957 - AluSq SINE Alu -3 310 1 1735 170 11 0 chr6 16640725 16641007 -165774235 + AluJo SINE Alu 1 285 -27 2366 85 0 7 chr6 16641329 16641657 -165773585 - AluSx SINE Alu 0 312 1 1461 150 118 0 chr6 16643117 16643371 -165771871 + AluJo SINE Alu 5 288 -24 21 0 0 0 chr6 16643788 16643809 -165771433 + AT_rich Low_complexity Low_complexity 1 21 0 730 145 13 0 chr6 16644814 16644966 -165770276 + CT-rich Low_complexity Low_complexity 1 154 0 1126 84 0 89 chr6 16644977 16645167 -165770075 - AluY SINE Alu -3 308 136 2393 71 0 3 chr6 16645450 16645745 -165769497 + AluSc SINE Alu 1 294 -15 61 15 0 0 chr6 16647531 16647599 -165767643 + AT_rich Low_complexity Low_complexity 1 68 0 278 239 0 57 chr6 16650032 16650120 -165765122 + MIR SINE MIR 69 151 -111 189 0 0 0 chr6 16653058 16653079 -165762163 + (T)n Simple_repeat Simple_repeat 1 21 0 227 221 63 87 chr6 16653770 16653897 -165761345 + MIR SINE MIR 59 182 -80 238 139 0 0 chr6 16653940 16653976 -165761266 + MER2 DNA MER2_type 310 345 0 2142 105 20 3 chr6 16654224 16654518 -165760724 - AluSq SINE Alu -14 299 1 3596 216 102 50 chr6 16657825 16659058 -165756184 - Charlie1a DNA MER1_type -4 1451 155 1770 190 53 30 chr6 16659117 16659548 -165755694 - L1MB7 LINE L1 -336 5848 5408 636 234 32 6 chr6 16659548 16659706 -165755536 - Charlie1a DNA MER1_type -1293 162 1 215 206 294 0 chr6 16660170 16660238 -165755004 - MIR SINE MIR -116 146 59 681 197 204 29 chr6 16660945 16661219 -165754023 + L1MA7 LINE L1 5991 6312 0 270 324 0 19 chr6 16662080 16662185 -165753057 + MIR SINE MIR 158 260 -2 264 27 0 0 chr6 16662360 16662397 -165752845 - AluY SINE Alu -2 299 263 1909 130 67 28 chr6 16662438 16662799 -165752443 - THE1C LTR MaLR 0 375 1 206 182 18 36 chr6 16665395 16665450 -165749792 + CT-rich Low_complexity Low_complexity 3 56 0 230 321 107 0 chr6 16668799 16668930 -165746312 + MER5B DNA MER1_type 34 178 0 643 199 45 0 chr6 16669780 16669936 -165745306 + MER5A DNA MER1_type 1 163 -26 231 299 44 29 chr6 16669814 16669951 -165745291 - MER5A DNA MER1_type -27 162 24 * 2205 73 29 4 chr6 16669967 16670242 -165745000 - AluY SINE Alu -10 301 20 2361 46 42 7 chr6 16672934 16673219 -165742023 + AluY SINE Alu 2 296 -15 1703 161 29 29 chr6 16673368 16673678 -165741564 - MLT1B LTR MaLR -79 311 2 206 133 0 44 chr6 16675912 16675957 -165739285 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 181 333 120 26 chr6 16676133 16676250 -165738992 + L2 LINE L2 2959 3086 -227 339 245 71 0 chr6 16676300 16676398 -165738844 + L2 LINE L2 3203 3307 -6 548 196 98 0 chr6 16677109 16677242 -165738000 - MSTD LTR MaLR 0 396 251 429 277 90 28 chr6 16679096 16679273 -165735969 + L2 LINE L2 3121 3308 -5 859 219 93 12 chr6 16682270 16682517 -165732725 - L1MB3 LINE L1 -284 5899 5633 228 75 0 50 chr6 16684227 16684267 -165730975 - L1M4 LINE L1 -743 5403 5366 267 31 0 0 chr6 16684319 16684351 -165730891 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 681 179 62 34 chr6 16690236 16690415 -165724827 - MLT1B LTR MaLR -205 185 2 1098 184 161 19 chr6 16690598 16690865 -165724377 - AluJb SINE Alu -7 305 1 1249 159 174 15 chr6 16691065 16691329 -165723913 + AluJo SINE Alu 1 306 -6 1357 102 255 4 chr6 16691329 16691564 -165723678 + AluSg SINE Alu 3 296 -4 2181 99 10 7 chr6 16694041 16694335 -165720907 - AluSx SINE Alu -17 295 1 25 31 0 0 chr6 16695826 16695858 -165719384 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr6 16696234 16696260 -165718982 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr6 16696625 16696655 -165718587 + (A)n Simple_repeat Simple_repeat 1 30 0 280 174 29 58 chr6 16697785 16697854 -165717388 - 5S rRNA rRNA -54 67 1 352 194 194 19 chr6 16700872 16700980 -165714262 + L1ME3A LINE L1 518 644 -5475 592 313 127 41 chr6 16701119 16701810 -165713432 + L1ME3A LINE L1 739 1562 -928 341 239 102 68 chr6 16702453 16702746 -165712496 + L1ME3A LINE L1 2115 2417 -3712 283 267 143 24 chr6 16702901 16703111 -165712131 + L1ME3A LINE L1 2771 3005 -3124 1085 170 14 19 chr6 16703810 16704022 -165711220 - MER20 DNA MER1_type -5 214 4 522 276 79 71 chr6 16704133 16704345 -165710897 + L1ME3A LINE L1 5423 5632 -521 590 200 213 0 chr6 16704345 16704500 -165710742 + MER5A DNA MER1_type 2 189 0 522 276 79 71 chr6 16704500 16704556 -165710686 + L1ME3A LINE L1 5632 5686 -467 1924 143 10 3 chr6 16704556 16704849 -165710393 + AluJo SINE Alu 1 295 -17 522 276 79 71 chr6 16704849 16705004 -165710238 + L1ME3A LINE L1 5686 5851 -302 1402 203 34 23 chr6 16706455 16706805 -165708437 + MLT1A2 LTR MaLR 4 357 -17 2466 91 0 0 chr6 16707178 16707485 -165707757 - AluSc SINE Alu -2 307 1 503 312 142 15 chr6 16707914 16708251 -165706991 + L1ME4a LINE L1 5732 6111 -10 2337 93 10 0 chr6 16708251 16708552 -165706690 - AluSx SINE Alu -8 304 1 275 287 127 77 chr6 16709150 16709488 -165705754 + L2 LINE L2 2909 3263 -9 1494 154 54 109 chr6 16709489 16709912 -165705330 + L1MB3 LINE L1 5781 6180 -3 2392 77 0 46 chr6 16709923 16710250 -165704992 + AluSx SINE Alu 1 312 0 1698 139 113 29 chr6 16710570 16710874 -165704368 + THE1C LTR MaLR 1 339 -36 2044 128 3 24 chr6 16710874 16711170 -165704072 - AluSx SINE Alu -22 290 1 1698 139 113 29 chr6 16711170 16711211 -165704031 + THE1C LTR MaLR 339 375 0 9578 119 39 48 chr6 16711211 16712692 -165702550 + THE1C-int LTR MaLR 1 1467 -113 2059 125 0 33 chr6 16712692 16712996 -165702246 + AluSg SINE Alu 1 294 -16 9578 119 39 48 chr6 16712996 16713109 -165702133 + THE1C-int LTR MaLR 1467 1580 0 1687 156 95 12 chr6 16713109 16713455 -165701787 + THE1C LTR MaLR 1 375 0 1489 246 36 24 chr6 16713695 16714162 -165701080 + MLT1E3 LTR MaLR 139 611 -13 288 303 132 24 chr6 16715151 16715402 -165699840 + LTR16C LTR ERVL 187 464 -27 287 316 44 37 chr6 16715449 16715585 -165699657 + MIR SINE MIR 126 262 0 2342 88 0 3 chr6 16716200 16716495 -165698747 - AluY SINE Alu -17 294 1 2277 120 0 0 chr6 16717914 16718223 -165697019 - AluSc SINE Alu 0 309 1 2118 129 0 26 chr6 16718251 16718553 -165696689 - AluSx SINE Alu -18 294 1 626 234 164 12 chr6 16718774 16719020 -165696222 - L1MD3 LINE L1 0 7995 6087 257 91 45 0 chr6 16719065 16719109 -165696133 + LTR10B LTR ERV1 6 51 -496 2474 129 137 6 chr6 16719132 16719614 -165695628 + LTR10A LTR ERV1 1 545 -64 2310 194 34 2 chr6 16719656 16720129 -165695113 - L1MD3 LINE L1 -382 5977 5490 1025 169 0 11 chr6 16720163 16720352 -165694890 + MER46A DNA MER2_type 41 227 -9 2503 76 0 3 chr6 16721614 16721918 -165693324 - AluSg SINE Alu -7 303 1 231 114 0 0 chr6 16722462 16722497 -165692745 + (T)n Simple_repeat Simple_repeat 1 35 0 648 220 90 34 chr6 16722813 16722990 -165692252 - MER5A DNA MER1_type 0 189 3 453 19 0 0 chr6 16723982 16724036 -165691206 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 71 0 0 chr6 16724465 16724507 -165690735 + AT_rich Low_complexity Low_complexity 1 42 0 2422 83 0 19 chr6 16724758 16725071 -165690171 + AluSg SINE Alu 1 307 -3 190 283 188 52 chr6 16727068 16727340 -165687902 + L2 LINE L2 2955 3263 -9 751 171 0 0 chr6 16728059 16728176 -165687066 + FLAM_C SINE Alu 1 117 -26 851 92 0 0 chr6 16728736 16728856 -165686386 - MER72 LTR ERV1 -44 678 559 1121 200 48 102 chr6 16729319 16729805 -165685437 + MER39 LTR ERV1 1 471 -94 655 209 8 8 chr6 16729805 16729934 -165685308 - FLAM_C SINE Alu -2 131 3 1121 200 48 102 chr6 16729934 16730019 -165685223 + MER39 LTR ERV1 471 559 -6 4240 131 20 6 chr6 16730019 16730721 -165684521 - MER72 LTR ERV1 0 722 11 3821 114 38 22 chr6 16730853 16731478 -165683764 + MER41B LTR ERV1 1 635 0 2898 149 127 69 chr6 16731478 16731737 -165683505 + MER41B-int LTR ERV1 1 244 -5702 2353 88 7 0 chr6 16731737 16732033 -165683209 - AluSq SINE Alu -15 298 1 2898 149 127 69 chr6 16732033 16732466 -165682776 + MER41B-int LTR ERV1 244 733 -5213 * 8763 125 48 22 chr6 16732462 16733827 -165681415 + MER41B-int LTR ERV1 3025 4441 -1505 2300 92 17 0 chr6 16733827 16734120 -165681122 - AluSx SINE Alu -14 298 1 8763 125 48 22 chr6 16734120 16734370 -165680872 + MER41B-int LTR ERV1 4441 4683 -1263 8425 121 11 6 chr6 16734370 16735579 -165679663 + HSMAR1 DNA Mariner 1 1219 -68 2262 89 10 0 chr6 16735579 16735870 -165679372 + AluY SINE Alu 1 294 -17 8425 121 11 6 chr6 16735870 16735935 -165679307 + HSMAR1 DNA Mariner 1219 1282 -5 7743 117 13 23 chr6 16735935 16737206 -165678036 + MER41B-int LTR ERV1 4688 5946 0 3939 127 16 19 chr6 16737207 16737843 -165677399 + MER41B LTR ERV1 2 635 0 505 241 54 42 chr6 16738368 16738534 -165676708 + L2 LINE L2 2578 2745 -569 346 269 152 6 chr6 16738602 16738773 -165676469 + L2 LINE L2 2864 3059 -213 3540 188 28 38 chr6 16738812 16738944 -165676298 + L1MB7 LINE L1 5032 5164 -1020 3541 119 6 20 chr6 16738944 16739329 -165675913 + LTR26B LTR ERV1 1 377 -154 2017 109 32 51 chr6 16739329 16739640 -165675602 + AluSx SINE Alu 1 305 -7 3541 119 6 20 chr6 16739640 16739793 -165675449 + LTR26B LTR ERV1 377 531 0 3540 188 28 38 chr6 16739793 16739950 -165675292 + L1MB7 LINE L1 5164 5321 -863 2149 141 0 3 chr6 16739950 16740262 -165674980 - AluSx SINE Alu -1 311 1 3540 188 28 38 chr6 16740262 16740386 -165674856 + L1MB7 LINE L1 5321 5445 -739 1537 186 41 0 chr6 16740386 16740676 -165674566 + AluJo SINE Alu 1 302 -10 3540 188 28 38 chr6 16740676 16741411 -165673831 + L1MB7 LINE L1 5445 6174 -10 433 244 158 30 chr6 16741554 16741580 -165673662 + MIR SINE MIR 20 41 -221 3956 148 58 70 chr6 16741580 16741602 -165673640 + MER4D LTR ERV1 1 22 -881 2651 3 0 3 chr6 16741602 16741890 -165673352 + AluYa5 SINE Alu 17 303 -8 3956 148 58 70 chr6 16741890 16742255 -165672987 + MER4D LTR ERV1 22 390 -513 1861 142 42 0 chr6 16742255 16742544 -165672698 - AluSx SINE Alu -11 301 1 3956 148 58 70 chr6 16742544 16742726 -165672516 + MER4D LTR ERV1 390 573 -330 1769 179 7 0 chr6 16742726 16743006 -165672236 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr6 16743011 16743051 -165672191 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3956 148 58 70 chr6 16743051 16743387 -165671855 + MER4D LTR ERV1 577 903 0 433 244 158 30 chr6 16743387 16743524 -165671718 + MIR SINE MIR 41 204 -58 267 185 222 56 chr6 16743544 16743652 -165671590 + MER34 LTR ERV1 1 126 -416 * 1202 223 38 41 chr6 16743620 16744037 -165671205 + MER39 LTR ERV1 259 674 -33 418 116 0 43 chr6 16744057 16744126 -165671116 + Tigger2 DNA MER2_type 4 69 -2649 * 2248 133 76 19 chr6 16744116 16744538 -165670704 + Tigger2 DNA MER2_type 2273 2718 0 3659 119 22 22 chr6 16744574 16745196 -165670046 + LTR26E LTR ERV1 1 622 0 384 326 28 28 chr6 16745200 16745418 -165669824 + L2 LINE L2 2842 3059 -213 228 288 0 27 chr6 16745553 16745626 -165669616 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 1686 133 208 0 chr6 16745910 16746247 -165668995 + MER101 LTR ERV1 68 474 0 725 246 32 25 chr6 16746537 16746818 -165668424 + L1MC5 LINE L1 7634 7916 -45 198 270 216 9 chr6 16747271 16747382 -165667860 + L2 LINE L2 3138 3271 -1 458 272 174 0 chr6 16747674 16747858 -165667384 - MIR SINE MIR -10 252 37 542 219 138 81 chr6 16748071 16748283 -165666959 - MIR SINE MIR 0 262 33 1715 195 0 0 chr6 16748283 16748580 -165666662 - AluJb SINE Alu -10 302 6 542 219 138 81 chr6 16748580 16748614 -165666628 - MIR SINE MIR -229 33 2 588 179 57 0 chr6 16749090 16749196 -165666046 + AluSq/x SINE Alu 5 116 -197 2202 110 0 7 chr6 16749247 16749556 -165665686 - AluSg1 SINE Alu 0 309 3 2400 78 0 13 chr6 16751670 16751976 -165663266 - AluSx SINE Alu -10 302 1 271 160 0 0 chr6 16751987 16752037 -165663205 - MER113 DNA MER1_type? -321 200 151 1784 179 27 3 chr6 16752047 16752344 -165662898 + AluSx SINE Alu 1 304 -8 225 283 152 0 chr6 16752453 16752545 -165662697 - L2 LINE L2 -17 3296 3191 681 299 317 27 chr6 16752642 16754106 -165661136 - L2 LINE L2 -355 2959 1071 4982 124 50 16 chr6 16754329 16755077 -165660165 + L1MA5 LINE L1 5368 6154 -146 2301 99 3 10 chr6 16755077 16755381 -165659861 + AluSx SINE Alu 1 302 -10 4982 124 50 16 chr6 16755381 16755532 -165659710 + L1MA5 LINE L1 6154 6298 -2 248 337 77 12 chr6 16755786 16755955 -165659287 + L1ME4a LINE L1 5426 5605 -516 300 258 92 8 chr6 16756077 16756197 -165659045 + L1ME4a LINE L1 5831 5960 -161 190 262 0 0 chr6 16756329 16756371 -165658871 + L3 LINE CR1 893 934 -643 296 360 29 14 chr6 16756411 16756550 -165658692 + L3 LINE CR1 1058 1198 -379 2217 106 0 0 chr6 16756729 16757031 -165658211 - AluSg SINE Alu -8 302 1 2226 107 10 3 chr6 16757032 16757330 -165657912 - AluSx SINE Alu -10 302 3 396 263 105 12 chr6 16757810 16757928 -165657314 + MIR SINE MIR 9 135 -73 1968 135 0 10 chr6 16758536 16758832 -165656410 - AluJo SINE Alu -15 297 5 222 37 0 0 chr6 16760255 16760282 -165654960 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr6 16760507 16760537 -165654705 + (TA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr6 16760618 16760666 -165654576 + (TA)n Simple_repeat Simple_repeat 2 49 0 235 307 131 88 chr6 16761951 16762709 -165652533 + L2 LINE L2 1560 2349 -965 1604 190 63 123 chr6 16762722 16763391 -165651851 + L1MB8 LINE L1 4396 5024 -1122 * 1765 186 0 3 chr6 16763388 16763733 -165651509 + L1MB8 LINE L1 5490 5833 -345 206 400 30 15 chr6 16763789 16763924 -165651318 + L2 LINE L2 2607 2743 -571 194 350 33 42 chr6 16764145 16764265 -165650977 + L2 LINE L2 2763 2881 -433 2069 124 0 17 chr6 16765489 16765787 -165649455 - AluSx SINE Alu -19 293 1 264 341 82 14 chr6 16765829 16766037 -165649205 + L2 LINE L2 1876 2097 -1217 1984 93 33 43 chr6 16766664 16766965 -165648277 - AluSx SINE Alu -14 298 1 338 298 53 30 chr6 16768101 16768232 -165647010 - MIR3 SINE MIR -33 175 42 2328 98 0 13 chr6 16769734 16770050 -165645192 + AluSx SINE Alu 1 312 0 2465 89 0 6 chr6 16770806 16771120 -165644122 - AluSx SINE Alu 0 312 1 239 341 57 63 chr6 16771476 16771793 -165643449 - L2 LINE L2 -575 2739 2425 1457 279 203 0 chr6 16771914 16772573 -165642669 + L2 LINE L2 1808 2600 -714 275 295 122 58 chr6 16772604 16772882 -165642360 - L2 LINE L2 -2 3311 3016 506 286 125 0 chr6 16774790 16774982 -165640260 - MIR SINE MIR -11 251 36 39 50 0 0 chr6 16775343 16775403 -165639839 + AT_rich Low_complexity Low_complexity 1 60 0 480 296 111 5 chr6 16775807 16776006 -165639236 + MIR SINE MIR 29 248 -14 421 345 141 21 chr6 16776084 16776707 -165638535 - L2 LINE L2 -613 2701 2004 1957 107 4 7 chr6 16777158 16777429 -165637813 + AluSp SINE Alu 44 313 0 437 206 0 0 chr6 16777540 16777613 -165637629 + FRAM/FAM SINE Alu 1 69 -107 216 0 0 0 chr6 16777634 16777658 -165637584 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr6 16778823 16778851 -165636391 + AT_rich Low_complexity Low_complexity 1 28 0 2385 236 95 29 chr6 16778959 16779827 -165635415 - L1MEc LINE L1 -5403 993 35 472 302 83 54 chr6 16780893 16781171 -165634071 + L2 LINE L2 2919 3204 -109 432 258 52 39 chr6 16782521 16782564 -165632678 + MER103 DNA DNA 3 44 -122 1946 132 42 0 chr6 16782564 16782852 -165632390 - AluSx SINE Alu -12 300 1 2292 108 0 0 chr6 16782858 16783154 -165632088 - AluSx SINE Alu -15 297 2 432 258 52 39 chr6 16783154 16783258 -165631984 + MER103 DNA DNA 48 159 -7 2867 259 126 75 chr6 16783422 16783894 -165631348 - HAL1 LINE L1 -64 2443 1997 225 0 0 0 chr6 16783894 16783919 -165631323 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2867 259 126 75 chr6 16783919 16784872 -165630370 - HAL1 LINE L1 -510 1997 875 2141 107 7 3 chr6 16784872 16785172 -165630070 - AluSg SINE Alu -9 301 1 2867 259 126 75 chr6 16785172 16785825 -165629417 - HAL1 LINE L1 -1632 875 257 13162 129 31 18 chr6 16785838 16787986 -165627256 + Tigger1 DNA MER2_type 237 2413 -5 403 154 173 19 chr6 16788167 16788271 -165626971 - MIR SINE MIR -20 242 123 213 351 106 39 chr6 16788325 16788533 -165626709 + L2 LINE L2 235 456 -2858 2235 101 19 3 chr6 16788579 16788886 -165626356 + AluSq SINE Alu 1 312 -1 2562 65 0 0 chr6 16788911 16789219 -165626023 - AluY SINE Alu -3 308 1 202 278 0 19 chr6 16789420 16789474 -165625768 + MER5A DNA MER1_type 8 60 -129 185 296 28 42 chr6 16789553 16789624 -165625618 + MER5B DNA MER1_type 85 154 -24 671 273 116 5 chr6 16790236 16790452 -165624790 - MIR SINE MIR -1 261 22 344 259 79 79 chr6 16791877 16792093 -165623149 - L2 LINE L2 -32 3240 3025 1702 125 16 22 chr6 16792312 16792633 -165622609 + L1PB4 LINE L1 4126 4444 -1702 604 163 98 24 chr6 16792633 16792756 -165622486 + AluJ SINE Alu 1 132 -180 3806 176 21 19 chr6 16792756 16793548 -165621694 + L1PB4 LINE L1 4469 5262 -884 581 135 23 60 chr6 16793538 16793671 -165621571 - L1M2 LINE L1 -631 5669 5542 * 1170 197 24 21 chr6 16793680 16794092 -165621150 + L1PB4 LINE L1 5267 6156 0 4786 129 38 5 chr6 16794097 16794908 -165620334 + L1MA5 LINE L1 5461 6298 -2 308 156 67 44 chr6 16794950 16795040 -165620202 + L1M4 LINE L1 5197 5288 -858 * 1058 174 38 9 chr6 16795035 16795247 -165619995 + L1MC3 LINE L1 7399 7616 -169 965 90 7 0 chr6 16795326 16795470 -165619772 - L1MA1 LINE L1 -104 6198 6054 757 154 24 0 chr6 16795918 16796041 -165619201 - FLAM_C SINE Alu -7 126 1 203 297 47 16 chr6 16796402 16796466 -165618776 + MIR SINE MIR 127 192 -70 799 169 11 71 chr6 16798956 16799139 -165616103 + AluJ SINE Alu 137 308 -4 256 308 48 19 chr6 16799562 16799666 -165615576 + L2 LINE L2 3144 3250 -22 * 492 322 60 0 chr6 16799665 16799864 -165615378 - MIR SINE MIR -31 231 21 584 273 98 5 chr6 16801695 16801889 -165613353 + MIR SINE MIR 51 262 0 710 174 0 0 chr6 16802322 16802437 -165612805 - FLAM_A SINE Alu -18 115 1 222 167 0 33 chr6 16803345 16803405 -165611837 + A-rich Low_complexity Low_complexity 2 59 0 294 273 156 0 chr6 16803567 16803695 -165611547 + L3b LINE CR1 1316 1463 -120 2347 103 0 3 chr6 16803949 16804260 -165610982 - AluSq SINE Alu -3 310 1 244 310 159 44 chr6 16804712 16804825 -165610417 - L2 LINE L2 0 3272 3147 22 56 0 0 chr6 16804921 16804957 -165610285 + AT_rich Low_complexity Low_complexity 1 36 0 697 289 75 4 chr6 16805169 16805408 -165609834 - MIR SINE MIR 0 262 7 330 226 89 86 chr6 16805778 16805943 -165609299 - MIR SINE MIR -65 143 18 2375 75 0 7 chr6 16806189 16806484 -165608758 + AluSc SINE Alu 1 293 -16 360 254 122 37 chr6 16807029 16807218 -165608024 - L1ME3A LINE L1 -310 5929 5725 271 268 60 27 chr6 16807301 16807432 -165607810 - L1ME3A LINE L1 -470 5720 5608 503 284 62 28 chr6 16807516 16807941 -165607301 - L1ME3A LINE L1 -676 5555 5072 294 261 43 0 chr6 16807970 16808062 -165607180 + L1M4 LINE L1 4101 4196 -1950 442 280 136 8 chr6 16808167 16808410 -165606832 - L1ME3A LINE L1 -2122 4093 3820 4942 128 186 14 chr6 16808728 16809616 -165605626 + Tigger1 DNA MER2_type 1376 2416 -2 1986 142 0 3 chr6 16809889 16810171 -165605071 - AluSx SINE Alu -31 281 1 340 308 88 28 chr6 16810398 16810580 -165604662 - L1ME3A LINE L1 -4579 1817 1625 2151 103 14 0 chr6 16810676 16810967 -165604275 - AluSx SINE Alu -12 300 6 1476 276 137 40 chr6 16811014 16811148 -165604094 - L1ME3A LINE L1 -4862 1343 1223 329 228 13 0 chr6 16811148 16811227 -165604015 - MER116 DNA Mariner 0 80 1 1476 276 137 40 chr6 16811227 16811711 -165603531 - L1ME3A LINE L1 -4982 1223 787 2283 99 14 0 chr6 16811711 16812004 -165603238 - AluSx SINE Alu -15 297 1 1476 276 137 40 chr6 16812004 16812335 -165602907 - L1ME3A LINE L1 -5418 787 489 189 0 0 0 chr6 16812335 16812356 -165602886 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1476 276 137 40 chr6 16812356 16812542 -165602700 - L1ME3A LINE L1 -5716 489 96 2977 193 30 25 chr6 16813419 16813687 -165601555 + L1MC4a LINE L1 6781 7046 -762 2244 88 28 0 chr6 16813687 16813971 -165601271 - AluSg SINE Alu -18 292 1 2977 193 30 25 chr6 16813971 16814391 -165600851 + L1MC4a LINE L1 7046 7473 -335 942 184 32 0 chr6 16814392 16814550 -165600692 - AluJb SINE Alu -13 299 137 1311 229 82 3 chr6 16814552 16814871 -165600371 + L1MC4a LINE L1 7465 7808 0 222 366 24 0 chr6 16815272 16815354 -165599888 + L2 LINE L2 3189 3272 0 2787 176 56 14 chr6 16816226 16816742 -165598500 + L1M4c LINE L1 29 566 -5818 189 0 0 0 chr6 16816771 16816792 -165598450 + (TTTTTG)n Simple_repeat Simple_repeat 6 26 0 316 350 87 60 chr6 16816794 16817128 -165598114 + L1MB2 LINE L1 12 354 -6495 13733 223 31 21 chr6 16817856 16821812 -165593430 + L1P4 LINE L1 394 4504 -1719 273 57 0 0 chr6 16821812 16821847 -165593395 + (CA)n Simple_repeat Simple_repeat 2 36 0 13733 223 31 21 chr6 16821847 16822875 -165592367 + L1P4 LINE L1 4504 5520 -703 597 143 44 118 chr6 16822880 16823083 -165592159 + L1MB2 LINE L1 1446 1633 -5217 5108 205 75 25 chr6 16823083 16824495 -165590747 + L1MB2 LINE L1 3924 5406 -1442 3305 186 40 17 chr6 16824504 16825228 -165590014 + L1MB2 LINE L1 6131 6871 -2 1980 113 7 35 chr6 16825825 16826135 -165589107 - AluSq SINE Alu -12 301 1 1431 156 18 0 chr6 16826135 16826483 -165588759 - L1M4 LINE L1 -738 5440 5089 23 33 0 0 chr6 16827695 16827725 -165587517 + AT_rich Low_complexity Low_complexity 1 30 0 1762 156 7 7 chr6 16827746 16828035 -165587207 - AluJo SINE Alu -23 289 1 185 216 81 0 chr6 16828130 16828167 -165587075 - L2 LINE L2 -11 3302 3263 1497 196 28 11 chr6 16828190 16828476 -165586766 - AluJo SINE Alu -21 291 1 524 263 84 22 chr6 16829332 16829511 -165585731 - MER91B DNA MER1_type 0 190 1 310 282 59 35 chr6 16830322 16830524 -165584718 + L1MC5 LINE L1 7528 7734 -227 1920 149 0 10 chr6 16830683 16830978 -165584264 - AluJo SINE Alu -20 292 1 244 281 0 0 chr6 16831139 16831221 -165584021 + A-rich Low_complexity Low_complexity 1 82 0 181 221 73 29 chr6 16831544 16831612 -165583630 + MIR SINE MIR 121 191 -71 1414 153 9 0 chr6 16832107 16832323 -165582919 + AluJb SINE Alu 87 304 -8 495 186 0 62 chr6 16833233 16833346 -165581896 + L2 LINE L2 3207 3312 -1 611 118 39 94 chr6 16835065 16835101 -165580141 - FLAM_A SINE Alu -169 142 106 2345 102 0 3 chr6 16835101 16835405 -165579837 - AluSg SINE Alu -7 303 1 611 118 39 94 chr6 16835405 16835495 -165579747 - FLAM_A SINE Alu -205 106 23 771 191 6 25 chr6 16836761 16836918 -165578324 + FRAM SINE Alu 1 154 -12 2062 76 47 4 chr6 16836931 16837207 -165578035 + AluSg SINE Alu 1 288 -22 439 251 129 12 chr6 16837392 16837555 -165577687 - MIR SINE MIR -52 210 29 461 204 164 7 chr6 16837562 16837714 -165577528 - MER5B DNA MER1_type -2 176 1 186 143 0 0 chr6 16838234 16838269 -165576973 + (CGGGG)n Simple_repeat Simple_repeat 3 37 0 265 291 17 8 chr6 16838488 16838605 -165576637 + C-rich Low_complexity Low_complexity 3 120 0 229 318 47 9 chr6 16838875 16838982 -165576260 + MIR SINE MIR 43 153 -109 * 1289 293 92 48 chr6 16838977 16839948 -165575294 + L2 LINE L2 1795 2807 -507 180 0 0 0 chr6 16840029 16840049 -165575193 + (T)n Simple_repeat Simple_repeat 1 20 0 890 138 12 12 chr6 16840319 16840479 -165574763 - MER96B DNA MER1_type? -20 397 238 349 245 11 11 chr6 16840539 16840633 -165574609 + L2 LINE L2 3178 3271 -1 22 88 0 0 chr6 16841442 16841499 -165573743 + AT_rich Low_complexity Low_complexity 1 57 0 2346 106 0 0 chr6 16841735 16842037 -165573205 - AluSx SINE Alu -9 303 2 485 232 155 13 chr6 16842129 16842284 -165572958 + MER5A DNA MER1_type 7 183 -6 7165 29 48 0 chr6 16842407 16843348 -165571894 + L1PA4 LINE L1 5174 6155 0 685 199 33 55 chr6 16844490 16844671 -165570571 - MER5B DNA MER1_type -1 177 1 210 23 70 23 chr6 16844947 16844990 -165570252 + T-rich Low_complexity Low_complexity 2 46 0 279 179 40 51 chr6 16845088 16845187 -165570055 + MER34 LTR ERV1 1 43 -499 1269 202 94 34 chr6 16845205 16845606 -165569636 + MER39 LTR ERV1 296 585 0 190 250 105 13 chr6 16846952 16847028 -165568214 - MIR SINE MIR -1 261 179 877 186 6 13 chr6 16847149 16847305 -165567937 + AluJb SINE Alu 137 291 -21 194 238 95 0 chr6 16849470 16849533 -165565709 - MIR3 SINE MIR -11 197 129 2185 114 7 0 chr6 16849690 16849987 -165565255 + AluSq SINE Alu 1 299 -14 269 217 76 22 chr6 16852041 16852133 -165563109 + LTR67 LTR ERVL 459 555 -2 330 283 131 16 chr6 16852887 16853078 -165562164 - MIR SINE MIR -10 252 40 763 298 119 34 chr6 16853262 16853530 -165561712 + MLT1F LTR MaLR 1 245 -297 225 0 0 0 chr6 16853530 16853555 -165561687 + (GA)n Simple_repeat Simple_repeat 1 25 0 763 298 119 34 chr6 16853555 16853780 -165561462 + MLT1F LTR MaLR 245 536 -6 521 306 39 6 chr6 16854441 16854621 -165560621 - MIR SINE MIR -64 198 13 2002 151 3 3 chr6 16854769 16855067 -165560175 - AluSq SINE Alu -15 298 1 27 0 0 0 chr6 16855926 16855953 -165559289 + AT_rich Low_complexity Low_complexity 1 27 0 357 265 10 0 chr6 16856006 16856104 -165559138 + MIR SINE MIR 51 149 -113 2221 112 23 7 chr6 16856449 16856752 -165558490 + AluSx SINE Alu 1 308 -4 2313 102 0 0 chr6 16856880 16857174 -165558068 - AluSx SINE Alu -18 294 1 655 122 9 19 chr6 16857298 16857405 -165557837 - L1PA11 LINE L1 -5 6169 6064 545 226 89 47 chr6 16857625 16857860 -165557382 + MIR SINE MIR 8 252 -10 251 264 217 0 chr6 16858901 16859007 -165556235 - L2 LINE L2 0 3272 3144 184 268 207 0 chr6 16859572 16859654 -165555588 + L2 LINE L2 3168 3266 -6 231 140 0 0 chr6 16859825 16859875 -165555367 + (CA)n Simple_repeat Simple_repeat 1 50 0 468 269 122 38 chr6 16860189 16860427 -165554815 - LTR16A1 LTR ERVL 0 457 200 1058 150 0 40 chr6 16860479 16860652 -165554590 + Charlie3 DNA MER1_type 2 167 -2543 3221 110 89 20 chr6 16860656 16861148 -165554094 + MER1A DNA MER1_type 1 526 -1 416 193 34 11 chr6 16861349 16861437 -165553805 + L2 LINE L2 2231 2320 -994 576 268 51 75 chr6 16861437 16861732 -165553510 - MLT1H LTR MaLR 0 549 262 211 182 0 0 chr6 16861733 16861766 -165553476 + polypurine Low_complexity Low_complexity 3 35 0 579 292 49 52 chr6 16861826 16862093 -165553149 - MER57B LTR ERV1 -168 266 1 551 192 88 0 chr6 16862093 16862218 -165553024 - MLT1H LTR MaLR -349 200 65 2283 36 4 14 chr6 16862299 16862578 -165552664 + AluY SINE Alu 17 292 -19 2468 71 0 13 chr6 16862855 16863163 -165552079 - AluY SINE Alu -7 304 1 604 168 69 0 chr6 16863198 16863329 -165551913 - HsTC2 DNA Tc2 -178 1720 1581 283 208 0 0 chr6 16863345 16863398 -165551844 - HsTC2 DNA Tc2 -542 1356 1304 430 266 141 8 chr6 16863415 16863543 -165551699 - HsTC2 DNA Tc2 -1753 145 1 2318 73 42 0 chr6 16863580 16863868 -165551374 - AluY SINE Alu -11 300 1 721 222 130 17 chr6 16864157 16864387 -165550855 + MER2 DNA MER2_type 89 344 -1 2226 119 0 0 chr6 16864431 16864724 -165550518 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr6 16864781 16864822 -165550420 + AT_rich Low_complexity Low_complexity 1 41 0 1084 157 35 0 chr6 16864870 16865042 -165550200 + AluJb SINE Alu 109 286 -26 3643 156 19 3 chr6 16865066 16865657 -165549585 - L1MB5 LINE L1 -76 6098 5499 2122 96 0 4 chr6 16867568 16867869 -165547373 - AluSc SINE Alu 0 300 1 266 264 40 56 chr6 16868034 16868159 -165547083 - HAL1 LINE L1 -145 2362 2240 428 331 14 0 chr6 16868159 16868298 -165546944 - MIR SINE MIR -97 165 25 3802 102 10 142 chr6 16868327 16868658 -165546584 + LTR8 LTR ERV1 3 376 -315 2405 90 0 6 chr6 16868658 16868969 -165546273 + AluSg1 SINE Alu 1 309 0 3802 102 10 142 chr6 16868969 16869262 -165545980 + LTR8 LTR ERV1 376 502 -189 2652 55 0 0 chr6 16869262 16869573 -165545669 + AluY SINE Alu 1 311 0 3802 102 10 142 chr6 16869573 16869741 -165545501 + LTR8 LTR ERV1 502 691 0 2322 115 0 3 chr6 16869814 16870126 -165545116 + AluSx SINE Alu 1 311 -1 621 130 0 0 chr6 16870166 16870258 -165544984 + MER53 DNA DNA 23 114 -75 1226 197 87 79 chr6 16870310 16870436 -165544806 - MER39 LTR ERV1 0 707 583 1776 166 0 42 chr6 16870436 16870749 -165544493 + AluJo SINE Alu 1 300 -12 1226 197 87 79 chr6 16870749 16871003 -165544239 - MER39 LTR ERV1 -124 583 324 272 266 73 37 chr6 16870999 16871108 -165544134 - LTR48B LTR ERV1 -531 113 1 * 29 0 0 0 chr6 16871488 16871517 -165543725 + AT_rich Low_complexity Low_complexity 1 29 0 2345 108 3 16 chr6 16871517 16871833 -165543409 + AluSx SINE Alu 1 312 0 295 247 62 0 chr6 16871886 16871983 -165543259 + MIR SINE MIR 105 207 -55 898 251 114 80 chr6 16872824 16873536 -165541706 + L1ME4a LINE L1 5385 6120 -1 1866 176 59 42 chr6 16874120 16874545 -165540697 - MSTB1 LTR MaLR 0 432 1 510 149 0 43 chr6 16874928 16875022 -165540220 + FLAM_C SINE Alu 49 138 -5 2316 105 3 0 chr6 16875810 16876115 -165539127 - AluY SINE Alu -5 306 1 1703 179 43 0 chr6 16876284 16876564 -165538678 + AluJb SINE Alu 1 292 -20 1710 224 187 25 chr6 16876817 16877501 -165537741 + LTR50 LTR ERVL 1 795 0 1037 190 0 15 chr6 16877788 16877983 -165537259 - AluJo SINE Alu -8 304 113 2012 204 42 44 chr6 16877983 16878511 -165536731 - L1M4 LINE L1 -1057 5089 4563 1977 182 34 20 chr6 16878513 16878958 -165536284 - Charlie1a DNA MER1_type -529 926 476 1291 200 141 40 chr6 16878958 16879031 -165536211 + L1M4 LINE L1 2176 2240 -3906 1237 134 27 5 chr6 16879031 16879217 -165536025 + L1PA15 LINE L1 5976 6165 0 1291 200 141 40 chr6 16879217 16879518 -165535724 + L1M4 LINE L1 2240 2588 -3558 401 156 62 94 chr6 16879520 16879616 -165535626 - Charlie1a DNA MER1_type -962 493 401 14078 122 85 16 chr6 16879617 16880281 -165534961 + Tigger2 DNA MER2_type 2 619 -2099 2269 118 0 3 chr6 16880281 16880594 -165534648 + AluSx SINE Alu 1 312 0 14078 122 85 16 chr6 16880594 16882235 -165533007 + Tigger2 DNA MER2_type 619 2466 -252 998 97 7 13 chr6 16882232 16882386 -165532856 - Tigger2 DNA MER2_type -74 2644 2492 * 853 148 0 0 chr6 16882386 16882514 -165532728 + FLAM_C SINE Alu 11 138 -5 1957 206 9 45 chr6 16882571 16882993 -165532249 - Charlie1a DNA MER1_type -1048 407 1 594 110 49 0 chr6 16882998 16883080 -165532162 + AluSx SINE Alu 2 87 -226 741 147 0 0 chr6 16883087 16883203 -165532039 + Tigger2 DNA MER2_type 1780 1895 -823 1349 144 5 5 chr6 16883211 16883419 -165531823 + AluSx SINE Alu 86 293 -17 205 307 148 37 chr6 16883619 16883863 -165531379 - L2 LINE L2 -449 2865 2595 2065 153 30 12 chr6 16884299 16884632 -165530610 + MER7A DNA MER2_type 1 337 -9 2138 115 0 3 chr6 16884696 16884991 -165530251 - AluSq SINE Alu -19 294 1 1081 284 95 22 chr6 16884992 16885351 -165529891 + L2 LINE L2 2593 2977 -337 332 234 0 0 chr6 16885463 16885527 -165529715 + L2 LINE L2 3250 3313 0 211 176 0 0 chr6 16885656 16885690 -165529552 + C-rich Low_complexity Low_complexity 4 37 0 662 124 0 9 chr6 16885694 16885807 -165529435 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 2987 150 21 24 chr6 16885896 16886364 -165528878 + MLT1C LTR MaLR 1 467 0 2150 121 0 7 chr6 16886441 16886739 -165528503 - AluSx SINE Alu -16 296 1 185 308 13 83 chr6 16886903 16886969 -165528273 - L2 LINE L2 -210 3062 2993 2062 141 3 6 chr6 16886969 16887282 -165527960 - AluJo SINE Alu 0 312 1 185 308 13 83 chr6 16887282 16887371 -165527871 - L2 LINE L2 -279 2993 2918 946 251 207 16 chr6 16887691 16888077 -165527165 + LTR16B LTR ERVL 1 460 -4 1429 199 26 85 chr6 16889071 16889459 -165525783 + MLT1A1 LTR MaLR 1 365 0 357 268 188 35 chr6 16889478 16889947 -165525295 - L2 LINE L2 -1 3312 2742 191 271 43 86 chr6 16890099 16890169 -165525073 + L2 LINE L2 3242 3308 -5 276 236 56 0 chr6 16890524 16890596 -165524646 + LTR67 LTR ERVL 2 77 -480 551 284 7 0 chr6 16890854 16891009 -165524233 + LTR67 LTR ERVL 402 557 0 407 325 31 6 chr6 16892166 16892329 -165522913 + ERVL LTR ERVL 2738 2904 -2860 207 0 0 0 chr6 16892330 16892353 -165522889 + (TG)n Simple_repeat Simple_repeat 2 24 0 264 262 141 20 chr6 16892531 16892680 -165522562 + MLT1J LTR MaLR 1 167 -344 302 187 187 126 chr6 16892740 16892938 -165522304 + MLT1J LTR MaLR 277 486 -25 682 290 36 9 chr6 16892955 16893176 -165522066 + ERVL LTR ERVL 3027 3253 -2401 1016 279 113 22 chr6 16893235 16893826 -165521416 - L1M4 LINE L1 -1314 4832 4188 1231 121 6 0 chr6 16893851 16894024 -165521218 + AluSg/x SINE Alu 131 304 -8 290 275 30 53 chr6 16894051 16894182 -165521060 - L1M4 LINE L1 -1992 4154 4027 192 77 0 0 chr6 16894211 16894237 -165521005 + (TG)n Simple_repeat Simple_repeat 2 27 0 622 293 135 40 chr6 16894243 16894624 -165520618 - L1MC/D LINE L1 -683 5468 5125 2346 97 3 0 chr6 16894624 16894923 -165520319 - AluSp SINE Alu -13 300 1 622 293 135 40 chr6 16894923 16896121 -165519121 - L1MC/D LINE L1 -1026 5125 3875 24 0 0 0 chr6 16896192 16896216 -165519026 + AT_rich Low_complexity Low_complexity 1 24 0 407 316 76 46 chr6 16896333 16896874 -165518368 - L1MC/D LINE L1 -2421 3725 3169 711 153 18 92 chr6 16897221 16897384 -165517858 - MER106B DNA MER1_type -908 151 1 2704 104 30 3 chr6 16898190 16898555 -165516687 - THE1C LTR MaLR 0 375 1 1042 275 121 38 chr6 16898644 16899091 -165516151 + LTR33A LTR ERVL 2 485 -38 281 262 12 12 chr6 16899373 16899457 -165515785 + L2 LINE L2 3188 3271 -1 1780 191 110 45 chr6 16899514 16899583 -165515659 + Charlie4a DNA MER1_type 6 69 -1892 2302 79 13 23 chr6 16899583 16899887 -165515355 - AluY SINE Alu -10 301 1 2278 102 7 0 chr6 16899887 16900181 -165515061 - AluSx SINE Alu -16 296 1 1780 191 110 45 chr6 16900181 16900582 -165514660 + Charlie4a DNA MER1_type 68 508 0 315 275 194 25 chr6 16900609 16900769 -165514473 + MIR SINE MIR 49 235 -27 252 0 0 0 chr6 16901101 16901129 -165514113 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6951 63 40 25 chr6 16901129 16902911 -165512331 - SVA Other Other -518 1367 6 395 169 62 0 chr6 16903313 16903378 -165511864 + Tigger2 DNA MER2_type 1 69 -2649 * 2800 122 28 19 chr6 16903376 16903809 -165511433 + Tigger2 DNA MER2_type 2280 2716 -2 308 307 30 60 chr6 16903825 16903991 -165511251 - MIR SINE MIR -49 213 53 333 0 0 0 chr6 16904486 16904523 -165510719 + (GA)n Simple_repeat Simple_repeat 2 38 0 335 289 109 8 chr6 16904582 16904710 -165510532 - MIR3 SINE MIR -4 204 64 205 290 130 46 chr6 16904946 16905077 -165510165 - MIR3 SINE MIR -64 144 3 274 344 74 0 chr6 16905814 16905936 -165509306 + MIR SINE MIR 84 214 -48 788 241 176 0 chr6 16906171 16906432 -165508810 - LTR16A LTR ERVL -40 410 104 1943 122 0 82 chr6 16908131 16908460 -165506782 + AluSg SINE Alu 1 302 -8 324 0 0 0 chr6 16909097 16909133 -165506109 + (CA)n Simple_repeat Simple_repeat 2 37 0 431 301 23 27 chr6 16909998 16910217 -165505025 + Charlie8 DNA MER1_type 10 227 -2190 1810 146 43 10 chr6 16910705 16911007 -165504235 - AluSx SINE Alu 0 312 1 599 303 120 8 chr6 16911207 16911441 -165503801 + MIR SINE MIR 3 262 0 198 304 196 27 chr6 16911496 16911644 -165503598 - MIR SINE MIR -79 183 11 223 227 0 0 chr6 16912452 16912496 -165502746 + C-rich Low_complexity Low_complexity 1 44 0 658 194 20 80 chr6 16912775 16912976 -165502266 - MER53 DNA DNA 0 189 1 27 29 0 0 chr6 16913253 16913287 -165501955 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 16913328 16913349 -165501893 + AT_rich Low_complexity Low_complexity 1 21 0 1824 206 40 53 chr6 16913518 16913562 -165501680 + MER31B LTR ERV1 1 44 -422 4125 36 0 0 chr6 16913562 16914028 -165501214 - L1PA4 LINE L1 -3 6152 5687 1824 206 40 53 chr6 16914028 16914455 -165500787 + MER31B LTR ERV1 44 466 0 582 220 53 8 chr6 16914524 16914656 -165500586 + MER31B-int LTR ERV1 35 172 -4764 2211 119 0 0 chr6 16914707 16915009 -165500233 + AluSx SINE Alu 1 302 -10 511 128 73 37 chr6 16915055 16915164 -165500078 + MER31B-int LTR ERV1 169 281 -4655 * 3073 214 45 41 chr6 16915139 16915895 -165499347 + MER31B-int LTR ERV1 197 955 -3981 1904 139 9 6 chr6 16915904 16916228 -165499014 + MER31B-int LTR ERV1 1129 1453 -3483 1702 201 75 34 chr6 16916239 16916548 -165498694 + MER31B-int LTR ERV1 1632 1974 -2962 1843 164 0 7 chr6 16916548 16916840 -165498402 + AluJb SINE Alu 4 293 -19 1702 201 75 34 chr6 16916840 16917066 -165498176 + MER31B-int LTR ERV1 1974 2189 -2747 1617 168 53 83 chr6 16917064 16917203 -165498039 + MER31B-int LTR ERV1 3670 3812 -2484 * 852 181 0 0 chr6 16917203 16917330 -165497912 + FLAM_C SINE Alu 1 127 -6 1617 168 53 83 chr6 16917330 16917605 -165497637 + MER31B-int LTR ERV1 3812 5390 -906 2421 109 18 0 chr6 16917620 16917949 -165497293 - THE1B LTR MaLR -29 335 1 2598 196 84 92 chr6 16917949 16918785 -165496457 + MER31B-int LTR ERV1 4083 4911 -25 1879 184 70 48 chr6 16918790 16919246 -165495996 + MER31B LTR ERV1 1 466 0 1174 310 73 17 chr6 16919343 16919975 -165495267 - L1ME4a LINE L1 -175 5946 5280 49 76 0 0 chr6 16919977 16920082 -165495160 + AT_rich Low_complexity Low_complexity 1 105 0 23 0 0 0 chr6 16920324 16920347 -165494895 + AT_rich Low_complexity Low_complexity 1 23 0 2101 142 41 16 chr6 16920395 16920761 -165494481 + THE1C LTR MaLR 1 375 0 465 204 58 67 chr6 16920775 16920929 -165494313 - MER5B DNA MER1_type -13 176 17 516 210 166 25 chr6 16921354 16921511 -165493731 - MER5A DNA MER1_type -7 182 4 7509 191 58 100 chr6 16921613 16922137 -165493105 + L1MC4a LINE L1 5581 6125 -1809 2080 112 43 23 chr6 16922137 16922442 -165492800 + AluSx SINE Alu 1 311 -1 7509 191 58 100 chr6 16922442 16922787 -165492455 + L1MC4a LINE L1 6125 6483 -1451 528 236 9 0 chr6 16922787 16922893 -165492349 - MER81 DNA DNA -7 107 1 7509 191 58 100 chr6 16922893 16923350 -165491892 + L1MC4a LINE L1 6483 6957 -977 1844 186 0 0 chr6 16923350 16923651 -165491591 + AluJo SINE Alu 5 305 -7 7509 191 58 100 chr6 16923651 16924383 -165490859 + L1MC4a LINE L1 6957 7761 -173 1682 186 14 10 chr6 16924383 16924679 -165490563 + AluJo SINE Alu 1 297 -15 7509 191 58 100 chr6 16924679 16924846 -165490396 + L1MC4a LINE L1 7761 7933 -1 229 288 88 16 chr6 16925539 16925664 -165489578 + MIR SINE MIR 119 252 -10 305 292 0 0 chr6 16926223 16926319 -165488923 - MIR SINE MIR -1 261 166 331 291 156 0 chr6 16926346 16926487 -165488755 - MIR SINE MIR -21 241 79 219 69 0 0 chr6 16926743 16926772 -165488470 + (TG)n Simple_repeat Simple_repeat 1 29 0 650 198 26 37 chr6 16926818 16927053 -165488189 + MER31-int LTR ERV1 4430 4609 -327 582 256 213 0 chr6 16927053 16927264 -165487978 + MLT1L LTR MaLR 352 607 -8 1148 261 67 17 chr6 16927451 16927811 -165487431 - MLT1I LTR MaLR -29 380 3 690 242 31 0 chr6 16927941 16928102 -165487140 - L1ME3A LINE L1 -13 6157 5992 2123 138 0 3 chr6 16928776 16929087 -165486155 + AluJb SINE Alu 1 310 -2 922 208 110 20 chr6 16929570 16930123 -165485119 - MLT2F LTR ERVL 0 663 3 696 214 112 29 chr6 16930230 16930436 -165484806 - LTR16B LTR ERVL 0 464 242 2836 13 0 0 chr6 16931961 16932267 -165482975 - AluYb8 SINE Alu -12 306 1 1692 126 0 8 chr6 16932500 16932739 -165482503 + AluSq SINE Alu 1 237 -76 370 178 0 27 chr6 16933230 16933303 -165481939 + MLT1C LTR MaLR 95 165 -340 5725 133 60 33 chr6 16933339 16934874 -165480368 - pTR5 LTR ERV1 0 2438 744 842 208 64 101 chr6 16934874 16935172 -165480070 + MLT1C LTR MaLR 181 467 0 2141 125 0 25 chr6 16935210 16935530 -165479712 - AluSx SINE Alu 0 312 1 532 215 137 17 chr6 16935674 16935897 -165479345 - MIR SINE MIR 0 262 15 2394 93 3 0 chr6 16936045 16936357 -165478885 - AluSq SINE Alu 0 313 1 1558 176 55 0 chr6 16937199 16937360 -165477882 - AluJb SINE Alu -15 297 113 180 0 0 0 chr6 16937360 16937380 -165477862 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1558 176 55 0 chr6 16937380 16937490 -165477752 - AluJb SINE Alu -199 113 11 242 234 110 128 chr6 16937506 16937713 -165477529 - HAL1b LINE L1 -613 735 533 787 207 32 27 chr6 16937713 16937901 -165477341 - MER53 DNA DNA 0 189 1 242 234 110 128 chr6 16937901 16937966 -165477276 - HAL1b LINE L1 -815 533 468 6094 27 0 0 chr6 16937986 16938686 -165476556 - L1PA4 LINE L1 0 6155 5456 412 244 11 13 chr6 16941910 16942055 -165473187 - MIR SINE MIR -63 145 13 1756 81 0 0 chr6 16942326 16942548 -165472694 + AluY SINE Alu 86 307 -4 2011 224 20 13 chr6 16942606 16943062 -165472180 + MLT1C LTR MaLR 9 467 0 1984 125 18 4 chr6 16943101 16943414 -165471828 - AluSx SINE Alu 0 317 1 454 256 170 39 chr6 16943561 16943925 -165471317 + L1ME4a LINE L1 5710 6121 0 200 269 45 30 chr6 16944157 16944224 -165471018 - MIR SINE MIR -70 192 125 198 186 23 0 chr6 16945264 16945307 -165469935 - L2 LINE L2 -5 3308 3265 208 277 139 51 chr6 16945339 16945476 -165469766 - L2 LINE L2 -1 3271 3123 392 365 40 5 chr6 16945513 16945735 -165469507 + MIR SINE MIR 27 256 -6 575 350 65 21 chr6 16947455 16948178 -165467064 - L2 LINE L2 -457 2857 2103 1302 181 14 14 chr6 16948551 16948916 -165466326 + Tigger1 DNA MER2_type 1 2418 0 2250 234 131 35 chr6 16948924 16948945 -165466297 + L2 LINE L2 2224 2242 -1071 390 212 130 14 chr6 16948945 16949091 -165466151 - MER103 DNA DNA -1 165 3 2250 234 131 35 chr6 16949091 16950069 -165465173 + L2 LINE L2 2242 3312 -1 2075 131 3 10 chr6 16950160 16950474 -165464768 - AluSx SINE Alu 0 312 1 435 244 67 30 chr6 16950958 16951093 -165464149 + L2 LINE L2 3161 3300 -13 718 139 0 0 chr6 16951588 16951696 -165463546 + AluSg/x SINE Alu 195 302 -10 1286 100 39 0 chr6 16952575 16952755 -165462487 - MER39B LTR ERV1 -26 627 441 632 164 36 9 chr6 16952755 16952865 -165462377 + AluJo SINE Alu 79 191 -121 745 259 109 51 chr6 16952881 16953175 -165462067 - MLT1D LTR MaLR -189 316 6 834 153 0 88 chr6 16953444 16953614 -165461628 + FRAM SINE Alu 1 155 -21 200 321 57 38 chr6 16953620 16953779 -165461463 - MIR SINE MIR -70 192 31 2362 82 0 0 chr6 16954555 16954888 -165460354 + AluY SINE Alu 1 311 0 559 128 128 8 chr6 16955993 16956126 -165459116 - MIR SINE MIR -65 197 49 478 283 60 12 chr6 16956251 16956417 -165458825 + MIR SINE MIR 2 175 -87 2368 106 25 124 chr6 16957689 16957895 -165457347 - Tigger2a DNA MER2_type -2274 434 209 971 34 8 0 chr6 16957895 16958013 -165457229 - L1PA3 LINE L1 0 6155 6037 2368 106 25 124 chr6 16958013 16958068 -165457174 - Tigger2a DNA MER2_type -2499 209 150 1752 156 44 0 chr6 16958068 16958343 -165456899 + AluJo SINE Alu 1 287 -25 2368 106 25 124 chr6 16958343 16958562 -165456680 - Tigger2a DNA MER2_type -2558 150 1 200 182 0 23 chr6 16958744 16958788 -165456454 + MIR3 SINE MIR 112 154 -54 212 333 130 0 chr6 16959049 16959157 -165456085 - MIR SINE MIR -78 184 63 1851 65 0 16 chr6 16959527 16959772 -165455470 - L1PA6 LINE L1 0 6154 5914 916 78 0 0 chr6 16960353 16960469 -165454773 + MSTA LTR MaLR 1 116 -312 2741 131 16 14 chr6 16960970 16961397 -165453845 + MSTA LTR MaLR 1 428 0 2667 147 24 47 chr6 16962712 16963249 -165451993 + L1MA7 LINE L1 5726 6250 -41 188 278 44 33 chr6 16963630 16963720 -165451522 + MIR SINE MIR 61 151 -111 2701 94 8 6 chr6 16964096 16964459 -165450783 + THE1B LTR MaLR 1 364 0 405 296 15 8 chr6 16964740 16964872 -165450370 + MIR3 SINE MIR 65 197 -11 422 280 47 57 chr6 16965012 16965205 -165450037 + MIR SINE MIR 7 197 -65 590 196 33 98 chr6 16965295 16965479 -165449763 + MER5B DNA MER1_type 4 175 -3 4819 70 27 21 chr6 16966569 16967225 -165448017 - PABL_A LTR ERV1 0 660 1 607 179 0 9 chr6 16967225 16967320 -165447922 + MLT2F LTR ERVL 10 105 -558 1611 239 75 47 chr6 16967363 16967630 -165447612 + MLT2F LTR ERVL 181 468 -195 1523 183 67 14 chr6 16967630 16967975 -165447267 - MLT1A1 LTR MaLR 0 365 3 1611 239 75 47 chr6 16967975 16968172 -165447070 + MLT2F LTR ERVL 468 658 -5 2030 173 18 25 chr6 16968381 16968774 -165446468 - MLT1B LTR MaLR 0 390 1 308 108 4 13 chr6 16970120 16970171 -165445071 + MLT2D LTR ERVL 367 406 -8 1024 158 22 0 chr6 16970214 16970397 -165444845 - MER53 DNA DNA -2 187 1 311 272 23 69 chr6 16970407 16970580 -165444662 - MLT1J LTR MaLR -330 181 17 531 268 89 67 chr6 16970660 16970884 -165444358 - MIR SINE MIR -16 246 18 271 277 50 10 chr6 16970895 16970996 -165444246 - L2 LINE L2 -11 3302 3198 1083 186 3 111 chr6 16971021 16971083 -165444159 + MLT1B LTR MaLR 118 185 -205 2099 95 20 26 chr6 16971083 16971388 -165443854 + AluSc SINE Alu 1 303 -6 1083 186 3 111 chr6 16971388 16971631 -165443611 + MLT1B LTR MaLR 185 390 0 624 252 155 20 chr6 16971759 16972253 -165442989 - L2 LINE L2 -274 3039 2401 577 281 218 18 chr6 16972703 16973038 -165442204 - L2 LINE L2 -965 2349 1948 1519 240 52 103 chr6 16973074 16973225 -165442017 + MER21B LTR ERV1 11 168 -695 1480 162 9 104 chr6 16973225 16973553 -165441689 + AluSp SINE Alu 1 297 -16 1519 240 52 103 chr6 16973553 16974185 -165441057 + MER21B LTR ERV1 168 754 -109 471 238 28 0 chr6 16974186 16974329 -165440913 - L2 LINE L2 -1429 1885 1739 1186 200 80 85 chr6 16974437 16974802 -165440440 + MLT1A1 LTR MaLR 1 363 -2 2088 142 3 0 chr6 16975147 16975442 -165439800 - AluSx SINE Alu -16 296 1 235 296 0 0 chr6 16975469 16975523 -165439719 + L2 LINE L2 3214 3267 -5 576 226 82 0 chr6 16975777 16975936 -165439306 - MIR SINE MIR -3 259 88 620 269 11 6 chr6 16975988 16976163 -165439079 + MER5B DNA MER1_type 1 176 -2 2510 201 72 34 chr6 16977244 16977830 -165437412 - MLT1E3 LTR MaLR 0 624 13 1559 91 5 0 chr6 16977830 16978029 -165437213 + AluSq SINE Alu 106 305 -8 199 277 253 0 chr6 16978730 16978813 -165436429 - L2 LINE L2 -29 3243 3140 272 330 62 23 chr6 16979112 16979279 -165435963 - MIR3 SINE MIR -11 197 24 709 161 31 31 chr6 16979279 16979405 -165435837 - MER5A DNA MER1_type 0 189 61 1761 163 13 13 chr6 16979405 16979712 -165435530 - AluJo SINE Alu -5 307 1 709 161 31 31 chr6 16979712 16979747 -165435495 - MER5A DNA MER1_type -127 62 28 511 255 196 12 chr6 16980838 16981093 -165434149 + L2 LINE L2 2274 2575 -739 19767 27 0 0 chr6 16981140 16984095 -165431147 - L1PA4 LINE L1 -8 6147 3193 1286 148 29 29 chr6 16984121 16984364 -165430878 + THE1C LTR MaLR 133 375 0 497 308 174 10 chr6 16984412 16984607 -165430635 - MIR SINE MIR -7 255 29 200 130 22 0 chr6 16984703 16984749 -165430493 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1115 268 214 21 chr6 16985202 16985867 -165429375 - LTR50 LTR ERVL 0 795 3 685 257 43 10 chr6 16986088 16986298 -165428944 - MIR SINE MIR -3 259 38 544 318 25 20 chr6 16986371 16986616 -165428626 + MIR SINE MIR 14 259 -3 2012 205 80 17 chr6 16986989 16987310 -165427932 + MLT1D LTR MaLR 2 377 -128 689 216 24 0 chr6 16987310 16987435 -165427807 - FLAM_A SINE Alu -4 129 2 2012 205 80 17 chr6 16987435 16987573 -165427669 + MLT1D LTR MaLR 377 505 0 1659 51 0 10 chr6 16988735 16988932 -165426310 + AluY SINE Alu 99 293 -18 581 88 0 12 chr6 16988995 16989075 -165426167 + MADE1 DNA Mariner 1 79 -1 248 224 0 35 chr6 16989075 16989133 -165426109 + MER63 DNA MER1_type 687 742 -94 * 358 256 47 0 chr6 16989119 16989205 -165426037 + MER63 DNA MER1_type 970 1059 -2 24 0 0 0 chr6 16989220 16989244 -165425998 + AT_rich Low_complexity Low_complexity 1 24 0 1321 123 100 9 chr6 16989275 16989495 -165425747 - MSTA LTR MaLR 0 428 189 2207 114 3 7 chr6 16989495 16989802 -165425440 - AluSg1 SINE Alu -3 306 1 2072 133 10 0 chr6 16989802 16990102 -165425140 - AluSx SINE Alu -9 303 1 4609 158 15 13 chr6 16990102 16991345 -165423897 - L1M1 LINE L1 -562 5738 4493 2151 100 4 0 chr6 16991617 16991917 -165423325 + AluSx SINE Alu 1 301 0 323 23 23 0 chr6 16991918 16991962 -165423280 + (CA)n Simple_repeat Simple_repeat 2 46 0 470 325 65 22 chr6 16991987 16992206 -165423036 - MIR SINE MIR -27 235 1 218 254 0 16 chr6 16992232 16992295 -165422947 + G-rich Low_complexity Low_complexity 2 63 0 720 248 130 4 chr6 16994666 16994928 -165420314 - L1ME4a LINE L1 -238 5883 5589 2239 136 76 35 chr6 16995047 16995203 -165420039 - MER83 LTR ERV1 -25 423 275 2412 74 23 0 chr6 16995203 16995502 -165419740 - AluY SINE Alu -5 306 1 2239 136 76 35 chr6 16995502 16995751 -165419491 - MER83 LTR ERV1 -173 275 1 1888 144 0 42 chr6 16995776 16996089 -165419153 - AluSx SINE Alu -12 300 1 345 149 0 0 chr6 16996123 16996190 -165419052 + (GA)n Simple_repeat Simple_repeat 2 68 0 290 323 118 35 chr6 16996872 16997126 -165418116 - L1ME4a LINE L1 -529 5592 5318 875 266 86 44 chr6 16997241 16997625 -165417617 - MLT1L LTR MaLR -74 541 142 971 192 0 0 chr6 16997762 16997929 -165417313 + AluJb SINE Alu 136 302 -10 1045 226 146 14 chr6 16998250 16998538 -165416704 - MLT1D LTR MaLR 0 505 180 972 169 0 13 chr6 16998545 16998699 -165416543 - FRAM SINE Alu -24 152 1 617 209 29 91 chr6 16998700 16998910 -165416332 - MLT1D LTR MaLR -308 197 1 2102 119 0 29 chr6 16999802 17000113 -165415129 + AluSx SINE Alu 1 302 -10 1652 189 48 46 chr6 17000420 17000791 -165414451 - MLT1A2 LTR MaLR -2 372 1 2100 206 43 57 chr6 17001601 17002112 -165413130 + MLT1D LTR MaLR 1 504 -1 28 0 0 0 chr6 17002932 17002960 -165412282 + AT_rich Low_complexity Low_complexity 1 28 0 2166 117 7 0 chr6 17002960 17003251 -165411991 - AluSx SINE Alu -19 293 1 494 179 89 9 chr6 17003364 17003476 -165411766 - L2 LINE L2 -11 3302 3182 243 296 42 0 chr6 17004156 17004227 -165411015 - L3 LINE CR1 -254 1323 1250 276 260 10 31 chr6 17004476 17004572 -165410670 - L3 LINE CR1 -341 1236 1143 2502 170 10 0 chr6 17004757 17005156 -165410086 - MER57A LTR ERV1 0 403 1 346 227 43 71 chr6 17005395 17005536 -165409706 + MIR3 SINE MIR 60 196 -12 2512 56 3 40 chr6 17007600 17007921 -165407321 + AluY SINE Alu 1 309 -2 2481 87 3 0 chr6 17007979 17008288 -165406954 + AluSg SINE Alu 1 310 0 588 252 176 22 chr6 17008640 17008862 -165406380 - MIR SINE MIR 0 262 7 349 331 56 28 chr6 17008991 17009133 -165406109 - MIR3 SINE MIR -25 183 37 1331 263 94 35 chr6 17009504 17010067 -165405175 - MLT1L LTR MaLR 0 615 20 1607 183 48 0 chr6 17010193 17010488 -165404754 + AluJb SINE Alu 1 309 -3 420 295 137 13 chr6 17010515 17010749 -165404493 + L1ME LINE L1 5478 5740 -381 1994 140 34 0 chr6 17010992 17011284 -165403958 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr6 17011326 17011347 -165403895 + AT_rich Low_complexity Low_complexity 1 21 0 239 317 183 0 chr6 17012857 17012939 -165402303 + L2 LINE L2 3143 3239 -33 393 22 0 0 chr6 17012944 17012990 -165402252 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 981 236 56 36 chr6 17013571 17013992 -165401250 - MER20B DNA MER1_type -1 782 297 1913 105 4 14 chr6 17013992 17014268 -165400974 + AluSg SINE Alu 30 302 -8 981 236 56 36 chr6 17014268 17014334 -165400908 - MER20B DNA MER1_type -486 297 234 299 167 15 0 chr6 17014344 17014410 -165400832 - L1MC4 LINE L1 0 8042 7976 505 239 147 51 chr6 17014440 17014754 -165400488 - L1MC4 LINE L1 -139 7903 7560 1094 254 82 9 chr6 17015052 17015371 -165399871 - L1MC4a LINE L1 -1942 5866 5525 393 232 50 118 chr6 17015378 17015598 -165399644 - MER20B DNA MER1_type -543 240 36 226 237 158 26 chr6 17016170 17016246 -165398996 + MIR SINE MIR 143 228 -34 2082 126 0 7 chr6 17016410 17016711 -165398531 - AluSx SINE Alu 0 312 14 399 91 0 0 chr6 17016866 17016921 -165398321 - MLT2B1 LTR ERVL 0 520 466 3518 203 38 65 chr6 17016983 17017859 -165397383 - MER21B LTR ERV1 -11 852 1 1773 224 48 60 chr6 17017859 17018338 -165396904 - MLT2B1 LTR ERVL -47 473 1 336 209 58 35 chr6 17019127 17019213 -165396029 - MIR SINE MIR -87 121 34 344 250 162 35 chr6 17020743 17020971 -165394271 - L1ME4a LINE L1 -169 5952 5696 1763 169 37 3 chr6 17022351 17022526 -165392716 - AluJo SINE Alu -7 305 114 282 29 0 0 chr6 17022526 17022561 -165392681 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1763 169 37 3 chr6 17022561 17022680 -165392562 - AluJo SINE Alu -198 114 1 971 208 0 12 chr6 17022705 17022873 -165392369 - FAM SINE Alu -9 166 1 313 150 0 33 chr6 17022983 17023044 -165392198 + FRAM/FAM SINE Alu 16 68 -98 714 148 0 26 chr6 17023045 17023160 -165392082 - FAM SINE Alu -18 167 56 2179 107 3 13 chr6 17023180 17023479 -165391763 + AluSg SINE Alu 1 296 -14 268 321 52 11 chr6 17023488 17023609 -165391633 - MIR SINE MIR -63 145 38 685 297 73 69 chr6 17023709 17024151 -165391091 + L2 LINE L2 2467 2919 -394 573 113 0 0 chr6 17024151 17024231 -165391011 - MADE1 DNA Mariner 0 80 1 685 297 73 69 chr6 17024231 17024360 -165390882 + L2 LINE L2 2919 3046 -267 657 274 167 0 chr6 17024474 17024678 -165390564 - MIR SINE MIR -5 257 20 485 262 0 0 chr6 17024678 17024781 -165390461 + L2 LINE L2 3211 3313 0 2022 147 0 13 chr6 17025396 17025703 -165389539 + AluSx SINE Alu 1 303 -9 588 264 61 20 chr6 17026055 17026252 -165388990 + MIR SINE MIR 23 227 -35 229 138 17 17 chr6 17026276 17026334 -165388908 + (TTA)n Simple_repeat Simple_repeat 2 59 0 228 35 0 0 chr6 17027653 17027682 -165387560 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 575 194 97 0 chr6 17027757 17027860 -165387382 - MER81 DNA DNA 0 114 2 574 133 18 0 chr6 17028901 17029014 -165386228 + CT-rich Low_complexity Low_complexity 1 115 0 2003 114 26 0 chr6 17029015 17029466 -165385776 - AluSx SINE Alu 0 462 5 1196 154 27 23 chr6 17029526 17029747 -165385495 - AluJo SINE Alu -3 309 88 651 140 0 0 chr6 17029797 17029890 -165385352 - AluJo SINE Alu -218 94 2 728 233 41 65 chr6 17029972 17030198 -165385044 + MLT1J2 LTR MaLR 265 450 0 1089 268 144 28 chr6 17031323 17032121 -165383121 + L1ME4a LINE L1 5258 6120 -1 1339 150 14 5 chr6 17032181 17032388 -165382854 - AluJb SINE Alu -103 209 1 910 265 126 6 chr6 17032407 17032724 -165382518 + L1ME3 LINE L1 5530 5884 -278 2271 117 3 0 chr6 17032754 17033053 -165382189 - AluSp SINE Alu -13 300 1 1056 149 0 6 chr6 17033354 17033515 -165381727 - AluJb SINE Alu -8 304 145 375 177 371 8 chr6 17033875 17033999 -165381243 + L3 LINE CR1 1389 1557 -20 246 185 111 0 chr6 17035113 17035167 -165380075 + MIR SINE MIR 157 216 -46 202 321 0 29 chr6 17035300 17035440 -165379802 + A-rich Low_complexity Low_complexity 3 138 0 468 267 92 33 chr6 17037264 17037504 -165377738 - LTR41 LTR ERVL -10 763 510 750 212 56 11 chr6 17037781 17037989 -165377253 - LTR41 LTR ERVL -554 241 1 248 314 23 0 chr6 17039165 17039251 -165375991 + L1MC4 LINE L1 6615 6702 -1340 261 206 0 16 chr6 17039252 17039315 -165375927 + (TA)n Simple_repeat Simple_repeat 2 63 0 345 24 0 0 chr6 17039465 17039507 -165375735 + (TG)n Simple_repeat Simple_repeat 1 42 0 419 318 41 42 chr6 17039911 17040101 -165375141 - MIR3 SINE MIR -64 144 2 388 267 23 15 chr6 17040826 17040957 -165374285 - MIR SINE MIR -14 248 117 2365 78 7 0 chr6 17041696 17041992 -165373250 + AluSg SINE Alu 1 298 -12 965 95 22 0 chr6 17043394 17043531 -165371711 - L1PB2 LINE L1 -2 6149 6010 450 241 35 17 chr6 17043618 17043734 -165371508 + MIR SINE MIR 89 206 -56 270 307 119 0 chr6 17044503 17044604 -165370638 + L2 LINE L2 2923 3035 -237 1606 156 26 11 chr6 17044802 17045071 -165370171 - MER2 DNA MER2_type -1 344 72 670 151 19 0 chr6 17045083 17045189 -165370053 - MER2 DNA MER2_type -232 113 6 1884 164 0 3 chr6 17045645 17045938 -165369304 - AluJb SINE Alu -20 292 1 237 388 86 0 chr6 17046639 17046791 -165368451 - L3b LINE CR1 -115 1468 1304 322 154 0 90 chr6 17047053 17047131 -165368111 + L2 LINE L2 3182 3252 -61 958 233 34 25 chr6 17047504 17047740 -165367502 - MIR SINE MIR -1 261 24 281 346 83 55 chr6 17047899 17048116 -165367126 + L2 LINE L2 3046 3268 -4 1346 267 70 14 chr6 17048503 17048934 -165366308 + MLT1G1 LTR MaLR 73 527 -68 5254 156 15 20 chr6 17050277 17050899 -165364343 + L1PA16 LINE L1 5148 5773 -393 2264 107 0 0 chr6 17050899 17051188 -165364054 + AluSq SINE Alu 1 289 -24 5254 156 15 20 chr6 17051188 17051576 -165363666 + L1PA16 LINE L1 5773 6161 -5 427 283 256 25 chr6 17051811 17052175 -165363067 + MLT1J2 LTR MaLR 1 448 -2 3240 56 0 0 chr6 17052497 17052874 -165362368 + L1PA6 LINE L1 5778 6154 0 1957 157 3 0 chr6 17053939 17054244 -165360998 - AluJb SINE Alu -6 306 1 217 336 114 7 chr6 17054577 17054717 -165360525 + L2 LINE L2 3118 3272 0 225 0 0 0 chr6 17055521 17055546 -165359696 + (TG)n Simple_repeat Simple_repeat 2 26 0 1398 188 44 76 chr6 17056102 17056226 -165359016 + MLT1C LTR MaLR 38 164 -232 4203 120 16 2 chr6 17056226 17056835 -165358407 - L1PA13 LINE L1 0 6163 5546 1398 188 44 76 chr6 17056835 17057152 -165358090 + MLT1C LTR MaLR 164 391 -5 2018 148 0 0 chr6 17057496 17057786 -165357456 - AluJb SINE Alu -22 290 1 2368 80 3 0 chr6 17059124 17059413 -165355829 + AluSp SINE Alu 1 290 -23 256 182 0 0 chr6 17059432 17059487 -165355755 + L1MC4 LINE L1 6648 6702 -1340 183 71 71 0 chr6 17059490 17059532 -165355710 + (TA)n Simple_repeat Simple_repeat 1 45 0 1854 164 0 10 chr6 17059543 17059842 -165355400 + AluJo SINE Alu 3 298 -14 1878 151 9 38 chr6 17059896 17060215 -165355027 + AluSx SINE Alu 1 310 -2 1804 102 121 11 chr6 17060429 17060694 -165354548 - AluSx SINE Alu -18 294 1 479 314 124 19 chr6 17060751 17061009 -165354233 - L1MC/D LINE L1 -2092 5716 5432 267 330 129 36 chr6 17061010 17061319 -165353923 + L2 LINE L2 2636 2973 -341 278 358 43 12 chr6 17061598 17061760 -165353482 + L2 LINE L2 3102 3268 -4 208 150 0 25 chr6 17061940 17061980 -165353262 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 185 366 49 8 chr6 17062296 17062419 -165352823 - MIR SINE MIR -76 186 59 21 57 0 0 chr6 17062564 17062599 -165352643 + AT_rich Low_complexity Low_complexity 1 35 0 380 307 52 26 chr6 17062647 17062839 -165352403 - L2 LINE L2 -153 3160 2964 1770 141 17 37 chr6 17064303 17064601 -165350641 + AluJo SINE Alu 1 292 -20 214 181 111 56 chr6 17064638 17064710 -165350532 - MIR SINE MIR -73 189 114 430 177 38 0 chr6 17065248 17065327 -165349915 - MER103 DNA DNA -48 118 37 2132 135 3 0 chr6 17065449 17065760 -165349482 + AluSx SINE Alu 1 312 0 822 200 24 6 chr6 17065941 17066111 -165349131 + MER5B DNA MER1_type 1 173 -5 309 238 152 19 chr6 17066738 17066843 -165348399 - MIR SINE MIR -26 236 118 232 325 12 0 chr6 17066838 17066918 -165348324 + MIR SINE MIR 176 256 -6 * 364 113 32 0 chr6 17066928 17066990 -165348252 - MIR3 SINE MIR -8 200 137 2266 85 3 3 chr6 17067007 17067302 -165347940 + AluSp SINE Alu 1 295 -18 1876 167 6 10 chr6 17067644 17067956 -165347286 + AluJb SINE Alu 1 311 -1 850 274 25 61 chr6 17068106 17068383 -165346859 + LTR16A LTR ERVL 18 284 -166 190 239 0 0 chr6 17068430 17068476 -165346766 - L2 LINE L2 0 3313 3268 1033 224 51 9 chr6 17069528 17069742 -165345500 - MER58A DNA MER1_type 0 224 2 698 305 35 0 chr6 17069778 17069978 -165345264 - MER102b DNA MER1_type -51 290 84 180 0 0 0 chr6 17069978 17069998 -165345244 + (CCA)n Simple_repeat Simple_repeat 1 20 0 2353 93 3 0 chr6 17070097 17070397 -165344845 + AluSp SINE Alu 1 301 -12 2058 173 195 24 chr6 17070451 17070959 -165344283 + LTR49 LTR ERV1 1 595 0 855 211 99 30 chr6 17070961 17071193 -165344049 - MIR SINE MIR -10 252 5 4254 119 10 8 chr6 17071201 17071825 -165343417 - MER41B LTR ERV1 -8 627 3 518 223 0 0 chr6 17072739 17072833 -165342409 - MER81 DNA DNA -20 94 1 311 290 65 38 chr6 17072957 17073129 -165342113 - MER5A DNA MER1_type 0 189 2 4142 120 8 35 chr6 17073229 17073593 -165341649 + MER41B LTR ERV1 1 341 -294 829 174 0 8 chr6 17073593 17073725 -165341517 + FLAM_C SINE Alu 2 132 -1 4142 120 8 35 chr6 17073725 17074011 -165341231 + MER41B LTR ERV1 341 633 -2 517 279 34 0 chr6 17074454 17074601 -165340641 + MIR SINE MIR 110 261 -1 1860 160 7 0 chr6 17074730 17075017 -165340225 + AluJb SINE Alu 1 289 -23 1940 163 0 0 chr6 17075018 17075333 -165339909 + AluSx SINE Alu 1 315 0 1776 102 0 12 chr6 17076116 17076362 -165338880 - AluSg SINE Alu -8 302 60 3746 164 40 37 chr6 17076447 17077156 -165338086 - MER50 LTR ERV1 -23 711 1 1683 191 7 0 chr6 17077536 17077839 -165337403 + AluJo SINE Alu 1 305 -7 2124 111 3 0 chr6 17078047 17078335 -165336907 + AluSq SINE Alu 1 289 -24 227 253 301 0 chr6 17078455 17078538 -165336704 - MIR SINE MIR -70 192 85 2189 176 50 23 chr6 17078542 17078991 -165336251 + MLT1C LTR MaLR 7 549 0 2754 86 18 39 chr6 17079033 17079378 -165335864 - THE1C LTR MaLR 0 375 37 2159 133 0 0 chr6 17079378 17079679 -165335563 + AluSx SINE Alu 1 301 -11 2754 86 18 39 chr6 17079679 17079716 -165335526 - THE1C LTR MaLR -338 37 1 4151 125 35 65 chr6 17079803 17080515 -165334727 - LTR8 LTR ERV1 0 691 1 2836 123 23 44 chr6 17080668 17081320 -165333922 - LTR8A LTR ERV1 0 727 1 5114 87 11 53 chr6 17082405 17082590 -165332652 - LTR8 LTR ERV1 0 691 500 2186 105 3 0 chr6 17082590 17082885 -165332357 + AluSx SINE Alu 1 296 -16 5114 87 11 53 chr6 17082885 17083420 -165331822 - LTR8 LTR ERV1 -191 500 1 282 141 26 13 chr6 17084602 17084680 -165330562 + (TG)n Simple_repeat Simple_repeat 2 80 0 749 161 32 0 chr6 17084755 17084910 -165330332 + L1MA4A LINE L1 6132 6291 -12 257 372 37 12 chr6 17085282 17085446 -165329796 + MIR SINE MIR 29 196 -66 1714 167 127 27 chr6 17085551 17085847 -165329395 - LTR54B LTR ERV1 -1 497 139 216 0 0 0 chr6 17085847 17085871 -165329371 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1714 167 127 27 chr6 17085871 17086024 -165329218 - LTR54B LTR ERV1 -359 139 3 2231 117 3 0 chr6 17086315 17086622 -165328620 - AluSx SINE Alu -2 310 3 891 168 56 0 chr6 17086656 17086817 -165328425 + L1PB4 LINE L1 5947 6116 -40 22 0 0 0 chr6 17086817 17086839 -165328403 + AT_rich Low_complexity Low_complexity 1 22 0 1888 223 90 33 chr6 17087380 17087860 -165327382 - MLT1F LTR MaLR 0 542 36 486 271 169 0 chr6 17087901 17088067 -165327175 + MIR SINE MIR 53 246 -16 219 69 0 0 chr6 17088549 17088578 -165326664 + (TG)n Simple_repeat Simple_repeat 2 30 0 1928 171 3 3 chr6 17088639 17088949 -165326293 + AluSx SINE Alu 1 310 -2 640 212 39 11 chr6 17088957 17089136 -165326106 + L1MB2 LINE L1 5148 5331 -815 796 223 0 51 chr6 17089136 17089311 -165325931 + AluJb SINE Alu 137 302 -10 254 175 0 18 chr6 17089317 17089374 -165325868 + A-rich Low_complexity Low_complexity 3 58 0 4409 148 55 28 chr6 17089384 17089750 -165325492 + L1MB2 LINE L1 5296 5651 -520 2126 128 44 0 chr6 17089750 17090047 -165325195 + AluSq SINE Alu 1 310 -3 4409 148 55 28 chr6 17090047 17090531 -165324711 + L1MB2 LINE L1 5651 6169 -2 209 285 4 111 chr6 17091902 17092091 -165323151 - MIR SINE MIR -60 202 29 4944 144 55 5 chr6 17092139 17092924 -165322318 - LTR1B LTR ERV1 0 826 3 570 164 10 0 chr6 17093292 17093396 -165321846 + MER53 DNA DNA 1 105 -84 311 143 6 246 chr6 17094453 17094579 -165320663 - L2 LINE L2 0 3313 3239 2206 120 3 3 chr6 17094579 17094879 -165320363 + AluJb SINE Alu 1 300 -12 311 143 6 246 chr6 17094879 17094927 -165320315 - L2 LINE L2 -74 3239 3181 1910 152 6 19 chr6 17095036 17095352 -165319890 - AluSx SINE Alu 0 312 1 567 236 91 25 chr6 17095354 17095596 -165319646 - L2 LINE L2 -59 3254 2997 339 277 115 76 chr6 17095626 17095983 -165319259 + MLT1K LTR MaLR 204 574 -14 1341 202 0 0 chr6 17096888 17097111 -165318131 - MER58A DNA MER1_type 0 224 2 1480 155 139 89 chr6 17097391 17097829 -165317413 + MLT1C LTR MaLR 1 460 -7 249 224 212 0 chr6 17099531 17099616 -165315626 - MIR3 SINE MIR -13 195 93 394 305 19 62 chr6 17099639 17099718 -165315524 + MIR SINE MIR 29 110 -152 2495 90 0 0 chr6 17099718 17100029 -165315213 - AluSx SINE Alu -1 311 1 394 305 19 62 chr6 17100029 17100159 -165315083 + MIR SINE MIR 110 229 -33 744 253 95 12 chr6 17100509 17100750 -165314492 + MIR SINE MIR 2 262 0 4638 104 6 2 chr6 17100835 17101471 -165313771 + L1PA15 LINE L1 5521 6159 -6 450 223 41 16 chr6 17101681 17101802 -165313440 + MIR3 SINE MIR 31 154 -54 1745 232 90 114 chr6 17101850 17102468 -165312774 - L2 LINE L2 -48 3265 2634 699 199 8 15 chr6 17102468 17102599 -165312643 + FAM SINE Alu 41 170 -15 1745 232 90 114 chr6 17102599 17103162 -165312080 - L2 LINE L2 -679 2634 1993 1837 184 25 22 chr6 17104154 17104519 -165310723 + MLT1B LTR MaLR 21 386 -4 752 161 12 50 chr6 17105190 17105351 -165309891 - MLT2C1 LTR ERVL 0 397 243 1282 225 62 3 chr6 17105362 17105682 -165309560 - MER58B DNA MER1_type -1 340 2 358 288 119 29 chr6 17105742 17106020 -165309222 + L1ME4a LINE L1 5746 6048 -73 1206 209 15 67 chr6 17106174 17106449 -165308793 - MLT1G LTR MaLR 0 590 333 2337 179 38 20 chr6 17106449 17106901 -165308341 - MLT1C LTR MaLR -4 463 4 1206 209 15 67 chr6 17106901 17106955 -165308287 - MLT1G LTR MaLR -257 333 278 7530 101 7 20 chr6 17106972 17108044 -165307198 - MER11C LTR ERVK -14 1057 1 687 210 129 20 chr6 17108053 17108261 -165306981 - MLT1G LTR MaLR -328 267 9 818 124 23 0 chr6 17108271 17108400 -165306842 + FLAM_C SINE Alu 1 132 -1 691 157 0 67 chr6 17108559 17108693 -165306549 - AluJb SINE Alu -187 125 1 1697 132 92 4 chr6 17108693 17108974 -165306268 - L1MC1 LINE L1 -10 6323 6018 256 197 167 0 chr6 17109915 17109981 -165305261 + MIR3 SINE MIR 14 90 -118 203 267 50 3 chr6 17110060 17110163 -165305079 + MIR SINE MIR 35 142 -66 382 272 10 0 chr6 17111038 17111141 -165304101 - MIR SINE MIR -21 241 138 682 244 160 91 chr6 17112334 17112454 -165302788 + MLT1D LTR MaLR 5 115 -352 1812 197 21 13 chr6 17112454 17112839 -165302403 - MLT1B LTR MaLR -2 388 1 682 244 160 91 chr6 17112839 17113147 -165302095 + MLT1D LTR MaLR 115 467 0 1867 174 30 22 chr6 17113456 17113818 -165301424 + MLT1A1 LTR MaLR 1 365 0 2197 66 216 3 chr6 17113998 17114318 -165300924 + THE1B-int LTR MaLR 1172 1559 -21 1685 129 101 21 chr6 17114325 17114611 -165300631 + THE1B LTR MaLR 1 309 -55 666 280 8 42 chr6 17114653 17114892 -165300350 + MIR SINE MIR 32 262 0 622 219 52 89 chr6 17115293 17115465 -165299777 - L2 LINE L2 0 3313 3153 2587 67 0 0 chr6 17115465 17115764 -165299478 + AluSc SINE Alu 1 299 -10 622 219 52 89 chr6 17115764 17115861 -165299381 - L2 LINE L2 -160 3153 3054 2343 160 80 34 chr6 17115862 17116337 -165298905 - MLT1D LTR MaLR -6 499 3 426 228 193 1 chr6 17116338 17116576 -165298666 - L2 LINE L2 -254 3059 2779 1555 142 130 128 chr6 17116725 17116766 -165298476 - MSTB LTR MaLR 0 426 387 2074 128 7 3 chr6 17116766 17117063 -165298179 + AluSx SINE Alu 1 298 -14 1555 142 130 128 chr6 17117063 17117106 -165298136 - MSTB LTR MaLR -39 387 346 4760 58 5 5 chr6 17117106 17117704 -165297538 + L1PA8 LINE L1 5570 6167 -5 1555 142 130 128 chr6 17117704 17118041 -165297201 - MSTB LTR MaLR -80 346 3 1645 169 34 0 chr6 17119381 17119647 -165295595 + AluJb SINE Alu 1 275 -37 254 93 0 23 chr6 17119648 17119691 -165295551 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 219 286 12 12 chr6 17119900 17119984 -165295258 - L2 LINE L2 -33 3239 3156 459 324 7 0 chr6 17120014 17120162 -165295080 - L2 LINE L2 -582 2732 2584 231 322 40 53 chr6 17120436 17120588 -165294654 + LTR67 LTR ERVL 99 248 -309 365 317 89 86 chr6 17120904 17121582 -165293660 - L2 LINE L2 -974 2340 1655 1686 176 3 30 chr6 17121582 17121884 -165293358 - AluJb SINE Alu -16 296 3 365 317 89 86 chr6 17121884 17122471 -165292771 - L2 LINE L2 -1659 1655 1071 452 269 48 36 chr6 17122490 17122687 -165292555 + MER20B DNA MER1_type 1 202 -17 833 219 15 5 chr6 17122931 17123127 -165292115 - LTR16B LTR ERVL -6 458 261 2163 138 0 6 chr6 17123414 17123725 -165291517 - AluSx SINE Alu 0 312 4 220 308 48 0 chr6 17123931 17124035 -165291207 + MIR SINE MIR 139 247 -15 21 0 0 0 chr6 17125198 17125219 -165290023 + AT_rich Low_complexity Low_complexity 1 21 0 227 208 0 0 chr6 17125247 17125300 -165289942 - MIR SINE MIR -13 249 197 2277 147 34 54 chr6 17125389 17125830 -165289412 + MSTB1 LTR MaLR 1 432 0 1054 240 12 4 chr6 17125994 17126248 -165288994 - MIR SINE MIR -1 261 6 1792 156 184 11 chr6 17126455 17126820 -165288422 + MSTA LTR MaLR 1 428 0 536 224 10 83 chr6 17127930 17128052 -165287190 - MER5B DNA MER1_type 0 178 73 548 213 19 0 chr6 17128052 17128160 -165287082 + MER81 DNA DNA 4 113 -1 536 224 10 83 chr6 17128160 17128229 -165287013 - MER5B DNA MER1_type -105 73 1 768 218 23 11 chr6 17128785 17128959 -165286283 + MER5B DNA MER1_type 3 178 0 938 185 28 0 chr6 17128970 17129148 -165286094 + MER5A DNA MER1_type 4 186 -3 288 185 0 0 chr6 17129960 17130014 -165285228 - AluJb SINE Alu 0 302 249 1276 135 0 16 chr6 17130014 17130206 -165285036 - AluJb SINE Alu -123 189 1 378 290 146 38 chr6 17130288 17130446 -165284796 - MIR SINE MIR -62 146 16 1732 206 161 33 chr6 17130561 17131021 -165284221 + LTR40a LTR ERVL 1 519 0 4575 117 15 24 chr6 17131466 17132183 -165283059 - MER50 LTR ERV1 -23 711 1 555 201 179 0 chr6 17133199 17133333 -165281909 + MER5A DNA MER1_type 9 166 -23 2114 116 0 23 chr6 17133360 17133661 -165281581 + AluSg SINE Alu 1 294 -16 314 203 0 40 chr6 17134642 17134716 -165280526 + 7SK RNA RNA 3 73 -120 214 155 0 28 chr6 17135250 17135321 -165279921 + (CA)n Simple_repeat Simple_repeat 1 69 0 3866 102 34 51 chr6 17135373 17135983 -165279259 + MER4A LTR ERV1 1 600 0 375 171 18 9 chr6 17136034 17136145 -165279097 + (CA)n Simple_repeat Simple_repeat 2 113 0 2255 109 0 0 chr6 17136598 17136905 -165278337 - AluSx SINE Alu 0 307 1 341 302 26 55 chr6 17136940 17137097 -165278145 + MIR SINE MIR 37 187 -75 2094 151 0 10 chr6 17137097 17137408 -165277834 - AluJb SINE Alu -4 308 1 341 302 26 55 chr6 17137408 17137451 -165277791 + MIR SINE MIR 187 230 -32 234 0 0 0 chr6 17137506 17137532 -165277710 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 226 58 15 chr6 17137533 17137670 -165277572 + (TTATA)n Simple_repeat Simple_repeat 2 144 0 2378 82 0 10 chr6 17137894 17138198 -165277044 - AluSc SINE Alu -8 301 1 2330 118 118 20 chr6 17139416 17139806 -165275436 + MSTA LTR MaLR 1 428 0 586 273 34 0 chr6 17139831 17140007 -165275235 + MIR SINE MIR 7 188 -74 1721 131 103 22 chr6 17140819 17141131 -165274111 + MER1B DNA MER1_type 1 337 0 2270 112 0 0 chr6 17141263 17141557 -165273685 - AluSc SINE Alu -15 294 1 258 349 48 30 chr6 17141567 17141733 -165273509 - MIR SINE MIR -74 188 20 1984 128 3 7 chr6 17141852 17142158 -165273084 + AluSx SINE Alu 3 307 0 224 735 0 0 chr6 17142206 17142342 -165272900 + A-rich Low_complexity Low_complexity 1 136 0 1845 205 34 38 chr6 17143202 17143483 -165271759 - MLT1C LTR MaLR 0 467 186 2258 123 0 0 chr6 17143483 17143791 -165271451 - AluSx SINE Alu -4 308 1 1845 205 34 38 chr6 17143791 17143952 -165271290 - MLT1C LTR MaLR -281 186 25 2197 186 47 2 chr6 17143952 17144360 -165270882 + MSTB LTR MaLR 1 426 0 1845 205 34 38 chr6 17144360 17144385 -165270857 - MLT1C LTR MaLR -442 25 1 204 162 27 0 chr6 17144635 17144672 -165270570 + GA-rich Low_complexity Low_complexity 4 41 0 230 330 68 15 chr6 17146079 17146343 -165268899 + L1MC/D LINE L1 4781 5058 -1088 297 312 70 19 chr6 17147591 17147748 -165267494 - MIR3 SINE MIR -5 203 39 22 35 0 0 chr6 17148185 17148214 -165267028 + AT_rich Low_complexity Low_complexity 1 29 0 39 60 0 0 chr6 17148407 17148474 -165266768 + AT_rich Low_complexity Low_complexity 1 67 0 280 218 141 0 chr6 17148540 17148618 -165266624 + MIR3 SINE MIR 107 195 -13 2134 133 7 0 chr6 17148847 17149141 -165266101 - AluSx SINE Alu -12 300 5 2248 88 17 3 chr6 17149745 17150040 -165265202 + AluSp SINE Alu 1 299 -14 356 100 33 56 chr6 17150040 17150130 -165265112 + GA-rich Low_complexity Low_complexity 1 88 0 3864 136 102 107 chr6 17151017 17152401 -165262841 - pTR5 LTR ERV1 -3 2435 729 321 290 77 24 chr6 17152645 17152893 -165262349 + L1MC/D LINE L1 5123 5383 -763 257 362 58 31 chr6 17153723 17153980 -165261262 + L1MC/D LINE L1 5526 5789 -2019 2109 140 0 9 chr6 17153980 17154295 -165260947 + AluSx SINE Alu 1 312 0 27 0 0 0 chr6 17154537 17154564 -165260678 + AT_rich Low_complexity Low_complexity 1 27 0 1320 150 122 0 chr6 17155642 17155888 -165259354 - LTR47A LTR ERVL -42 410 135 2369 130 7 94 chr6 17155988 17156388 -165258854 - L1PB4 LINE L1 -14 6142 5783 231 88 0 0 chr6 17156388 17156422 -165258820 + (TA)n Simple_repeat Simple_repeat 2 35 0 2369 130 7 94 chr6 17156422 17156467 -165258775 - L1PB4 LINE L1 -373 5783 5736 1805 155 0 43 chr6 17157534 17157856 -165257386 - AluJb SINE Alu -4 308 1 304 183 17 5 chr6 17158048 17158165 -165257077 - MER5B DNA MER1_type 0 178 2 3360 193 42 3 chr6 17158461 17159123 -165256119 - L1MC3 LINE L1 -11 7774 7087 2161 180 51 18 chr6 17159400 17159851 -165255391 + MLT1C LTR MaLR 1 466 -1 2059 125 10 13 chr6 17159897 17160067 -165255175 - AluSx SINE Alu -9 303 133 189 74 0 0 chr6 17160067 17160094 -165255148 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2059 125 10 13 chr6 17160094 17160227 -165255015 - AluSx SINE Alu -179 133 1 897 294 36 33 chr6 17160545 17160851 -165254391 - LTR16A LTR ERVL -15 435 129 276 206 32 0 chr6 17160951 17161014 -165254228 - MLT1C LTR MaLR -399 68 4 615 226 0 0 chr6 17161180 17161286 -165253956 + LTR39 LTR ERV1 673 778 -5 4435 163 52 4 chr6 17161824 17162571 -165252671 + LTR39 LTR ERV1 1 783 0 335 237 59 74 chr6 17163023 17163158 -165252084 + MIR SINE MIR 57 189 -73 378 42 0 0 chr6 17164096 17164144 -165251098 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 91 0 0 chr6 17164207 17164240 -165251002 + (TC)n Simple_repeat Simple_repeat 2 34 0 1713 248 93 77 chr6 17164689 17165545 -165249697 + L1MC4a LINE L1 5296 6165 -1643 335 277 87 33 chr6 17165774 17165958 -165249284 + MIR SINE MIR 8 201 -61 180 0 0 0 chr6 17166735 17166755 -165248487 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 182 182 0 0 chr6 17166890 17166923 -165248319 - L3 LINE CR1 -15 1562 1530 * 347 280 208 0 chr6 17166899 17167024 -165248218 - MIR3 SINE MIR -28 180 30 225 0 0 0 chr6 17167117 17167142 -165248100 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 588 296 140 40 chr6 17167766 17168188 -165247054 - MLT1J LTR MaLR -17 494 31 1138 207 83 109 chr6 17169360 17169936 -165245306 + MER34B LTR ERV1 5 565 0 183 308 189 0 chr6 17170942 17171085 -165244157 + MIR SINE MIR 77 246 -16 1704 152 0 79 chr6 17171088 17171416 -165243826 - AluJo SINE Alu -8 304 3 1940 209 34 5 chr6 17172211 17172623 -165242619 + MSTB LTR MaLR 3 426 0 967 177 0 0 chr6 17172725 17172883 -165242359 - FRAM SINE Alu -6 170 13 2089 102 6 57 chr6 17173904 17174218 -165241024 + AluSx SINE Alu 1 298 -14 192 292 188 0 chr6 17174223 17174319 -165240923 - L2 LINE L2 0 3313 3200 335 277 124 37 chr6 17175815 17176155 -165239087 + L2 LINE L2 2861 3290 -23 192 77 0 0 chr6 17176159 17176185 -165239057 + (TG)n Simple_repeat Simple_repeat 2 27 0 191 61 30 0 chr6 17176886 17176919 -165238323 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 530 246 59 69 chr6 17177004 17177207 -165238035 - L2 LINE L2 -2 3311 3111 255 278 259 4 chr6 17177337 17177607 -165237635 - L2 LINE L2 -48 3265 2927 265 323 83 0 chr6 17178354 17178450 -165236792 - MIR SINE MIR -67 141 38 784 149 104 26 chr6 17178558 17178712 -165236530 + MER5B DNA MER1_type 13 178 0 21 0 0 0 chr6 17178881 17178902 -165236340 + AT_rich Low_complexity Low_complexity 1 21 0 2367 103 0 0 chr6 17179245 17179546 -165235696 + AluSg SINE Alu 1 301 -9 1142 191 4 52 chr6 17181524 17181564 -165233678 - MER58A DNA MER1_type -2199 221 181 1815 116 3 78 chr6 17181564 17181883 -165233359 - AluY SINE Alu -16 295 1 1142 191 4 52 chr6 17181883 17182073 -165233169 - MER58A DNA MER1_type -2239 181 2 399 245 142 0 chr6 17182157 17182263 -165232979 + MIR SINE MIR 2 122 -140 180 152 0 0 chr6 17182306 17182339 -165232903 + MIR SINE MIR 129 161 -101 454 321 20 10 chr6 17182340 17182536 -165232706 - LTR16C LTR ERVL 0 491 294 199 329 0 37 chr6 17182687 17182769 -165232473 + MIR SINE MIR 161 239 -23 2120 123 10 0 chr6 17183196 17183489 -165231753 - AluSx SINE Alu -16 296 1 408 212 121 66 chr6 17184199 17184397 -165230845 - MLT1L LTR MaLR 0 615 407 217 0 0 57 chr6 17184816 17184851 -165230391 + (CCA)n Simple_repeat Simple_repeat 3 35 0 473 342 34 58 chr6 17186370 17186665 -165228577 - L2 LINE L2 0 3272 2985 749 154 0 0 chr6 17186670 17186780 -165228462 + AluJb SINE Alu 2 111 -201 337 244 0 12 chr6 17186780 17186866 -165228376 + MER61E LTR ERV1 1 85 -484 238 254 0 17 chr6 17186949 17187008 -165228234 + LTR19B LTR ERV1 227 284 -296 * 2444 177 22 44 chr6 17186987 17187444 -165227798 + MER61E LTR ERV1 85 531 -38 1232 133 6 0 chr6 17187467 17187648 -165227594 + AluJb SINE Alu 107 288 -24 228 319 7 52 chr6 17187755 17187890 -165227352 - L2 LINE L2 -455 2859 2731 384 276 171 7 chr6 17188633 17188696 -165226546 + MER5B DNA MER1_type 2 53 -125 633 193 0 0 chr6 17188696 17188815 -165226427 + L1PA16 LINE L1 6043 6161 -5 2415 135 38 19 chr6 17188818 17189189 -165226053 + MER83B LTR ERV1 1 378 0 384 276 171 7 chr6 17189189 17189273 -165225969 + MER5B DNA MER1_type 54 178 0 304 276 144 83 chr6 17190009 17190322 -165224920 + MER77 LTR ERV1 156 529 -76 1858 163 0 0 chr6 17190826 17191114 -165224128 + AluJo SINE Alu 4 291 -21 598 154 22 39 chr6 17191123 17191305 -165223937 + GA-rich Low_complexity Low_complexity 1 179 0 558 304 66 0 chr6 17192771 17192998 -165222244 - MIR SINE MIR -3 259 18 3916 94 0 23 chr6 17193151 17193336 -165221906 + MER9 LTR ERVK 1 189 -322 2615 58 0 0 chr6 17193336 17193647 -165221595 - AluY SINE Alu 0 311 1 3916 94 0 23 chr6 17193647 17193984 -165221258 + MER9 LTR ERVK 189 511 0 2389 98 3 0 chr6 17194924 17195229 -165220013 - AluSp SINE Alu -7 306 1 323 304 149 41 chr6 17195338 17195700 -165219542 - L2 LINE L2 -2 3311 2911 43430 37 22 1 chr6 17195862 17201887 -165213355 - L1PA3 LINE L1 -4 6151 1 199 214 0 0 chr6 17202717 17202759 -165212483 + L2 LINE L2 3272 3313 0 462 289 146 16 chr6 17203083 17203329 -165211913 - L3 LINE CR1 -721 856 579 850 261 73 46 chr6 17203366 17203640 -165211602 - MLT1J LTR MaLR -1 510 226 5141 119 11 7 chr6 17203640 17204364 -165210878 - LTR8A LTR ERV1 0 727 1 850 261 73 46 chr6 17204364 17204392 -165210850 - MLT1J LTR MaLR -285 226 200 2121 98 0 0 chr6 17204406 17204671 -165210571 - AluSg SINE Alu -45 265 1 4356 184 40 15 chr6 17204951 17205827 -165209415 + MER4D LTR ERV1 1 898 -5 236 312 97 0 chr6 17205992 17206085 -165209157 - MLT2F LTR ERVL 0 663 562 633 248 145 14 chr6 17206205 17206487 -165208755 - MLT2F LTR ERVL -319 344 26 1932 206 73 108 chr6 17207770 17208242 -165207000 - L1ME3 LINE L1 -2 6160 5673 2232 194 43 62 chr6 17208242 17208772 -165206470 + MLT2B1 LTR ERVL 1 520 0 1932 206 73 108 chr6 17208772 17208802 -165206440 - L1ME3 LINE L1 -489 5673 5643 2004 159 0 0 chr6 17208802 17209098 -165206144 - AluSx SINE Alu -16 296 1 1932 206 73 108 chr6 17209098 17209482 -165205760 - L1ME3 LINE L1 -519 5643 5304 257 231 0 0 chr6 17209760 17209812 -165205430 + L2 LINE L2 3212 3263 -9 257 229 147 28 chr6 17209839 17209948 -165205294 - HAL1b LINE L1 -472 876 755 1038 249 99 57 chr6 17210029 17210599 -165204643 + MLT1H1 LTR MaLR 2 555 0 1464 189 18 11 chr6 17211049 17211334 -165203908 + AluJo SINE Alu 1 287 -25 37 0 0 0 chr6 17211334 17211371 -165203871 + AT_rich Low_complexity Low_complexity 1 37 0 1102 248 65 83 chr6 17211382 17212104 -165203138 - HAL1 LINE L1 -824 1683 975 604 162 19 0 chr6 17212520 17212625 -165202617 - LTR47A LTR ERVL -343 109 3 630 233 53 72 chr6 17213339 17213696 -165201546 - MLT1H LTR MaLR -16 533 109 198 317 49 24 chr6 17213759 17213882 -165201360 - MIR SINE MIR -27 235 110 2153 95 3 0 chr6 17214102 17214385 -165200857 + THE1B-int LTR MaLR 1297 1580 0 2277 144 36 30 chr6 17214385 17214747 -165200495 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr6 17214903 17214925 -165200317 + AT_rich Low_complexity Low_complexity 1 22 0 1976 143 60 33 chr6 17214954 17215319 -165199923 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr6 17216118 17216142 -165199100 + (CA)n Simple_repeat Simple_repeat 1 24 0 232 277 40 50 chr6 17216372 17216473 -165198769 - MER5A DNA MER1_type -9 180 81 309 236 112 11 chr6 17216511 17216600 -165198642 + L2 LINE L2 2219 2316 -998 1520 127 9 18 chr6 17217728 17217957 -165197285 - AluSg/x SINE Alu 0 310 84 1666 174 34 7 chr6 17218305 17218603 -165196639 - AluJo SINE Alu -6 306 1 255 65 0 81 chr6 17220017 17220079 -165195163 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 345 318 23 8 chr6 17220162 17220291 -165194951 + MIR3 SINE MIR 10 140 -68 1609 165 0 84 chr6 17220771 17220917 -165194325 + AluJb SINE Alu 1 105 -207 2510 83 0 0 chr6 17220917 17221219 -165194023 + AluY SINE Alu 1 302 -9 1609 165 0 84 chr6 17221219 17221405 -165193837 + AluJb SINE Alu 105 305 -7 508 290 7 14 chr6 17222194 17222339 -165192903 - MER5B DNA MER1_type -12 166 23 366 322 84 7 chr6 17222395 17222538 -165192704 + MER5B DNA MER1_type 25 178 0 2171 114 0 0 chr6 17223288 17223587 -165191655 - AluSx SINE Alu 0 312 14 191 204 20 0 chr6 17223646 17223695 -165191547 + (CA)n Simple_repeat Simple_repeat 1 50 0 705 229 88 0 chr6 17224679 17224849 -165190393 + MIR SINE MIR 29 213 -49 332 349 48 66 chr6 17224917 17225011 -165190231 + L2 LINE L2 2456 2550 -764 2384 79 7 0 chr6 17225011 17225315 -165189927 - AluSp SINE Alu -7 306 1 332 349 48 66 chr6 17225315 17225616 -165189626 + L2 LINE L2 2550 2844 -470 212 256 0 0 chr6 17225700 17225743 -165189499 + polypyrimidine Low_complexity Low_complexity 5 47 0 356 289 40 40 chr6 17228110 17228335 -165186907 - MLT1J LTR MaLR 0 511 287 2212 85 97 22 chr6 17228340 17228659 -165186583 + MER61A LTR ERV1 1 343 0 2170 65 0 4 chr6 17229348 17229610 -165185632 - AluSc SINE Alu -14 295 35 570 238 139 0 chr6 17229941 17230092 -165185150 + MER45A DNA AcHobo 1 172 -6 593 346 11 23 chr6 17230103 17230366 -165184876 + MIR SINE MIR 2 261 -1 649 262 123 71 chr6 17230390 17230730 -165184512 - L2 LINE L2 -4 3309 2952 2232 107 0 0 chr6 17230971 17231262 -165183980 - AluSg SINE Alu -9 301 11 573 139 12 12 chr6 17231734 17231900 -165183342 + GA-rich Low_complexity Low_complexity 1 166 0 3355 173 65 37 chr6 17233295 17233470 -165181772 + L1MB3 LINE L1 5338 5507 -676 2523 75 0 0 chr6 17233470 17233777 -165181465 - AluY SINE Alu -4 307 1 3355 173 65 37 chr6 17233777 17234316 -165180926 + L1MB3 LINE L1 5507 6088 -95 2237 89 20 3 chr6 17234316 17234609 -165180633 - AluSx SINE Alu -14 298 1 3355 173 65 37 chr6 17234609 17234694 -165180548 + L1MB3 LINE L1 6088 6169 -14 393 22 0 0 chr6 17234694 17234740 -165180502 + (CA)n Simple_repeat Simple_repeat 1 46 0 251 24 71 0 chr6 17235310 17235352 -165179890 + T-rich Low_complexity Low_complexity 2 180 0 1687 183 3 3 chr6 17235352 17235636 -165179606 - AluJb SINE Alu -28 284 1 3973 133 139 88 chr6 17236519 17237868 -165177374 - pTR5 LTR ERV1 -143 2295 743 924 289 89 58 chr6 17237887 17238564 -165176678 + L1MEd LINE L1 2 712 -5407 207 69 0 0 chr6 17238564 17238593 -165176649 + (CA)n Simple_repeat Simple_repeat 1 29 0 924 289 89 58 chr6 17238593 17238772 -165176470 + L1MEd LINE L1 712 884 -5235 44 0 0 0 chr6 17238854 17238898 -165176344 + AT_rich Low_complexity Low_complexity 1 44 0 364 256 88 82 chr6 17238898 17239093 -165176149 + L1MEd LINE L1 814 1006 -5137 2215 96 3 35 chr6 17239093 17239407 -165175835 + AluSx SINE Alu 7 310 -2 364 256 88 82 chr6 17239407 17239652 -165175590 + L1MEd LINE L1 1006 1281 -4862 224 217 67 0 chr6 17239695 17239755 -165175487 - MIR SINE MIR -1 261 198 227 81 0 54 chr6 17240015 17240052 -165175190 - MER57B LTR ERV1 -319 115 81 201 366 0 12 chr6 17240052 17240134 -165175108 - MER5B DNA MER1_type -30 148 68 459 184 61 0 chr6 17240288 17240386 -165174856 - MER5A DNA MER1_type -83 106 3 251 150 0 0 chr6 17240428 17240468 -165174774 - MER5B DNA MER1_type -2 176 137 1301 165 70 70 chr6 17240478 17240679 -165174563 - MLT1A1 LTR MaLR -13 352 149 2104 117 3 31 chr6 17240679 17240996 -165174246 - AluSx SINE Alu -4 308 1 1301 165 70 70 chr6 17240996 17241122 -165174120 - MLT1A1 LTR MaLR -215 150 25 232 330 19 29 chr6 17241129 17241151 -165174091 - MER5B DNA MER1_type -37 141 120 1232 184 42 42 chr6 17241151 17241390 -165173852 + MER8 DNA MER2_type 1 239 0 232 330 19 29 chr6 17241390 17241470 -165173772 - MER5B DNA MER1_type -58 120 40 21 57 0 0 chr6 17242773 17242808 -165172434 + AT_rich Low_complexity Low_complexity 1 35 0 444 37 0 0 chr6 17242904 17242958 -165172284 + (TG)n Simple_repeat Simple_repeat 2 55 0 439 186 0 0 chr6 17243962 17244032 -165171210 - MER8 DNA MER2_type 0 239 170 * 2665 136 36 23 chr6 17244021 17244461 -165170781 + Tigger2 DNA MER2_type 2273 2718 0 280 344 75 0 chr6 17244554 17244647 -165170595 + L2 LINE L2 3173 3272 0 2297 94 0 16 chr6 17245294 17245601 -165169641 + AluSq SINE Alu 1 302 -11 198 194 0 0 chr6 17246296 17246327 -165168915 - MIR SINE MIR -63 145 115 508 178 19 19 chr6 17246479 17246586 -165168656 + MER5A DNA MER1_type 7 113 -76 3892 136 5 8 chr6 17247158 17247760 -165167482 + L1PA16 LINE L1 5545 6144 -22 261 263 103 32 chr6 17249048 17249204 -165166038 + MIR SINE MIR 96 262 0 2079 170 80 3 chr6 17249542 17249907 -165165335 + MER47B DNA MER2_type 26 418 0 1538 219 19 27 chr6 17250871 17251237 -165164005 - MLT1A2 LTR MaLR -6 368 6 315 0 0 0 chr6 17252072 17252107 -165163135 + (CA)n Simple_repeat Simple_repeat 2 36 0 2113 202 33 54 chr6 17252131 17252647 -165162595 - MLT1D LTR MaLR 0 505 1 202 305 0 0 chr6 17253385 17253444 -165161798 - L2 LINE L2 -8 3264 3206 1874 120 8 2 chr6 17253694 17253971 -165161271 + THE1B LTR MaLR 1 293 -62 1689 185 6 22 chr6 17254766 17255080 -165160162 + AluJo SINE Alu 1 309 -3 184 320 10 30 chr6 17255330 17255430 -165159812 + MIR SINE MIR 61 158 -104 281 358 37 22 chr6 17255682 17255816 -165159426 + L2 LINE L2 3132 3267 -5 675 239 40 105 chr6 17256348 17256624 -165158618 - MIR SINE MIR -4 258 1 2199 140 83 34 chr6 17256991 17257060 -165158182 - MSTA LTR MaLR 0 428 364 2088 90 76 0 chr6 17257060 17257337 -165157905 + AluSp SINE Alu 1 298 -15 2199 140 83 34 chr6 17257337 17257675 -165157567 - MSTA LTR MaLR -64 364 1 387 0 0 0 chr6 17258317 17258360 -165156882 + (TG)n Simple_repeat Simple_repeat 2 44 0 814 144 0 0 chr6 17259756 17259867 -165155375 + FLAM_C SINE Alu 1 111 -32 207 0 0 0 chr6 17259879 17259902 -165155340 + (TTG)n Simple_repeat Simple_repeat 2 24 0 279 296 83 46 chr6 17260173 17260281 -165154961 + L2 LINE L2 3161 3272 0 369 241 65 9 chr6 17260658 17260766 -165154476 + MIR SINE MIR 65 178 -84 2447 90 0 0 chr6 17261435 17261736 -165153506 + AluSx SINE Alu 1 301 -11 2217 101 7 33 chr6 17261804 17262111 -165153131 - AluSq SINE Alu -14 299 1 1848 151 20 7 chr6 17262432 17262736 -165152506 + MER46B DNA MER2_type 2 184 -52 21 0 0 0 chr6 17263829 17263850 -165151392 + AT_rich Low_complexity Low_complexity 1 21 0 2186 119 3 0 chr6 17264015 17264309 -165150933 + AluSx SINE Alu 6 300 -12 202 204 0 0 chr6 17264871 17264915 -165150327 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 445 338 122 31 chr6 17265046 17265566 -165149676 - L2 LINE L2 -180 3092 2513 588 240 0 8 chr6 17265843 17265964 -165149278 - MER5C DNA MER1_type -200 124 5 1205 217 103 37 chr6 17265997 17266347 -165148895 - MLT1J2 LTR MaLR -40 410 38 1822 161 0 16 chr6 17267347 17267843 -165147399 + AluJb SINE Alu 1 312 0 1172 106 6 0 chr6 17267858 17268037 -165147205 + (GAA)n Simple_repeat Simple_repeat 1 180 0 355 238 195 43 chr6 17268062 17268247 -165146995 + MIR SINE MIR 50 262 0 1864 201 44 29 chr6 17268420 17268756 -165146486 - MLT1C LTR MaLR -8 459 113 2874 109 0 3 chr6 17268756 17269132 -165146110 + THE1C LTR MaLR 1 375 0 1864 201 44 29 chr6 17269132 17269247 -165145995 - MLT1C LTR MaLR -354 113 1 2178 98 0 0 chr6 17271235 17271531 -165143711 + AluSx SINE Alu 7 302 0 1506 114 50 5 chr6 17273512 17273732 -165141510 - MER30 DNA MER1_type 0 230 1 357 99 37 0 chr6 17273741 17273822 -165141420 + (TA)n Simple_repeat Simple_repeat 1 84 0 298 301 83 26 chr6 17273891 17274047 -165141195 + MIR3 SINE MIR 33 197 -11 2250 97 3 31 chr6 17274728 17275049 -165140193 - AluSp SINE Alu -1 312 1 273 57 0 0 chr6 17275261 17275296 -165139946 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 230 243 57 14 chr6 17275550 17275620 -165139622 - L2 LINE L2 -13 3300 3228 22 35 0 0 chr6 17276910 17276939 -165138303 + AT_rich Low_complexity Low_complexity 1 29 0 3445 167 22 2 chr6 17277264 17277815 -165137427 + MER68 LTR ERV1 1 562 0 1206 252 151 43 chr6 17277818 17278647 -165136595 - L2 LINE L2 -18 3295 2341 1764 157 3 26 chr6 17278647 17278952 -165136290 - AluJo SINE Alu -13 299 2 1206 252 151 43 chr6 17278952 17278963 -165136279 - L2 LINE L2 -972 2341 2333 566 278 102 5 chr6 17278966 17279153 -165136089 - MIR SINE MIR -56 206 2 2233 91 0 3 chr6 17279280 17279602 -165135640 - AluSp SINE Alu 0 321 1 234 62 0 0 chr6 17279636 17279668 -165135574 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 1773 263 24 0 chr6 17279723 17280141 -165135101 + LTR16A LTR ERVL 21 448 -2 237 33 0 0 chr6 17280157 17280187 -165135055 + (CA)n Simple_repeat Simple_repeat 1 30 0 607 158 21 0 chr6 17280187 17280282 -165134960 + L1MC4 LINE L1 6705 6801 -1241 816 214 0 12 chr6 17280282 17280450 -165134792 + AluJb SINE Alu 132 297 -15 6016 157 37 63 chr6 17280455 17281747 -165133495 + L1MC4 LINE L1 6793 7994 -1 2689 127 46 7 chr6 17281763 17282197 -165133045 - L1MB2 LINE L1 -2 6169 5719 2354 183 72 17 chr6 17282852 17283381 -165131861 + L1MD3 LINE L1 7435 7992 -3 180 149 64 85 chr6 17283446 17283493 -165131749 - L2 LINE L2 0 3272 3227 2296 116 0 0 chr6 17284032 17284333 -165130909 + AluSx SINE Alu 1 301 -11 2056 92 0 11 chr6 17285060 17285332 -165129910 - AluSx SINE Alu -43 269 1 324 256 244 12 chr6 17285392 17285560 -165129682 - MIR SINE MIR 0 262 56 22 56 0 0 chr6 17285661 17285697 -165129545 + AT_rich Low_complexity Low_complexity 1 36 0 823 249 37 12 chr6 17285945 17286186 -165129056 + L1M4 LINE L1 3535 3781 -2365 3312 119 4 13 chr6 17286386 17286858 -165128384 - MER1A DNA MER1_type 0 529 62 186 278 189 0 chr6 17287071 17287161 -165128081 - MIR SINE MIR -111 151 45 2480 55 0 7 chr6 17287660 17287969 -165127273 + AluY SINE Alu 1 307 -4 2335 103 0 3 chr6 17288352 17288653 -165126589 - AluSg SINE Alu -10 300 1 226 260 83 21 chr6 17288691 17288787 -165126455 - L1ME4a LINE L1 -97 6024 5923 291 211 100 11 chr6 17292108 17292198 -165123044 + L1ME4a LINE L1 6018 6115 -6 209 152 43 0 chr6 17293278 17293324 -165121918 + GA-rich Low_complexity Low_complexity 2 49 0 189 0 0 0 chr6 17293368 17293389 -165121853 + (T)n Simple_repeat Simple_repeat 1 21 0 1834 146 3 26 chr6 17293591 17293899 -165121343 + AluJo SINE Alu 4 304 -8 2093 110 3 3 chr6 17293953 17294259 -165120983 + AluSp SINE Alu 1 306 0 1696 188 0 7 chr6 17294278 17294586 -165120656 - AluJb SINE Alu -6 306 1 184 310 0 0 chr6 17295469 17295527 -165119715 - MIR SINE MIR -108 154 97 1957 124 3 22 chr6 17295550 17295865 -165119377 - AluJo SINE Alu -3 309 1 2318 75 6 40 chr6 17296392 17296755 -165118487 - AluSq SINE Alu 0 354 3 186 43 0 0 chr6 17299147 17299170 -165116072 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr6 17300099 17300120 -165115122 + AT_rich Low_complexity Low_complexity 1 21 0 216 203 51 68 chr6 17301237 17301296 -165113946 + MIR SINE MIR 22 79 -129 294 269 107 34 chr6 17302206 17302355 -165112887 + L2 LINE L2 3118 3277 -36 228 130 0 0 chr6 17303854 17303900 -165111342 + LTR66 LTR ERVL 394 439 -171 235 124 29 76 chr6 17303902 17304007 -165111235 + (TA)n Simple_repeat Simple_repeat 1 100 0 2765 219 92 34 chr6 17304204 17305307 -165109935 - L1ME2 LINE L1 -31 6133 4978 1894 80 53 0 chr6 17307258 17307520 -165107722 + AluY SINE Alu 21 296 -15 208 362 73 24 chr6 17308718 17308964 -165106278 - L2 LINE L2 -337 2977 2720 235 324 34 34 chr6 17309176 17309352 -165105890 - L2 LINE L2 -925 2389 2214 850 217 69 23 chr6 17310545 17310762 -165104480 - MLT1E LTR MaLR -4 589 363 301 230 120 40 chr6 17312239 17312339 -165102903 - MIR SINE MIR -36 226 119 258 259 0 62 chr6 17313690 17313771 -165101471 - MIR SINE MIR -117 91 16 24 0 0 0 chr6 17316465 17316489 -165098753 + AT_rich Low_complexity Low_complexity 1 24 0 576 81 0 0 chr6 17316489 17316563 -165098679 - U3 snRNA snRNA -143 74 1 21 0 0 0 chr6 17317036 17317057 -165098185 + AT_rich Low_complexity Low_complexity 1 21 0 212 233 192 0 chr6 17317129 17317202 -165098040 - L2 LINE L2 0 3313 3227 464 158 13 26 chr6 17318673 17318749 -165096493 + FLAM_A SINE Alu 9 83 -59 2309 87 0 26 chr6 17319193 17319504 -165095738 + AluY SINE Alu 9 311 0 310 349 92 64 chr6 17320415 17320481 -165094761 - L2 LINE L2 0 3272 3209 974 181 31 62 chr6 17320481 17320707 -165094535 + MER20 DNA MER1_type 1 219 0 310 349 92 64 chr6 17320707 17321076 -165094166 - L2 LINE L2 -63 3209 2825 482 193 156 46 chr6 17322267 17322376 -165092866 - FLAM_A SINE Alu -12 130 10 667 254 12 0 chr6 17322480 17322649 -165092593 - MIR SINE MIR -45 217 47 1105 228 185 92 chr6 17323751 17324469 -165090773 - LTR1B LTR ERV1 -37 983 1 677 218 79 12 chr6 17325501 17325666 -165089576 + L2 LINE L2 3119 3294 -19 537 254 19 89 chr6 17326698 17326808 -165088434 + MIR SINE MIR 56 146 -116 1539 28 0 6 chr6 17326808 17327015 -165088227 + AluY SINE Alu 104 309 0 537 254 19 89 chr6 17327015 17327116 -165088126 + MIR SINE MIR 146 253 -9 595 251 0 116 chr6 17327225 17327432 -165087810 + MER91B DNA MER1_type 8 190 0 385 238 9 38 chr6 17328282 17328387 -165086855 + L1ME1 LINE L1 6048 6149 -17 865 188 64 43 chr6 17328399 17328633 -165086609 + MLT1L LTR MaLR 1 239 -376 2121 108 17 0 chr6 17328637 17328924 -165086318 + AluSq SINE Alu 1 292 -21 979 136 0 0 chr6 17330787 17330919 -165084323 + FLAM_C SINE Alu 2 133 0 779 245 71 74 chr6 17331050 17331373 -165083869 + MLT1L LTR MaLR 294 615 0 912 157 82 0 chr6 17332562 17332721 -165082521 - FRAM SINE Alu -7 169 1 222 37 0 0 chr6 17333027 17333054 -165082188 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 507 185 11 0 chr6 17333070 17333162 -165082080 - L2 LINE L2 -41 3272 3180 1389 146 0 61 chr6 17333448 17333695 -165081547 - MER21B LTR ERV1 0 863 632 235 254 0 0 chr6 17333698 17333757 -165081485 - MLT1E3 LTR MaLR -453 171 113 5022 150 37 37 chr6 17333784 17334646 -165080596 - MER21B LTR ERV1 -1 862 1 203 250 68 80 chr6 17334646 17334734 -165080508 + MIR3 SINE MIR 118 204 -4 190 298 0 18 chr6 17335821 17335878 -165079364 + L2 LINE L2 3243 3298 -15 186 43 0 0 chr6 17335883 17335906 -165079336 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2130 141 29 29 chr6 17337007 17337382 -165077860 + THE1C LTR MaLR 1 375 0 210 71 0 0 chr6 17337399 17337427 -165077815 + (T)n Simple_repeat Simple_repeat 1 28 0 1111 210 76 45 chr6 17337678 17338059 -165077183 - L1MC5 LINE L1 -26 7935 7543 1652 114 18 9 chr6 17338059 17338286 -165076956 - MER30 DNA MER1_type 0 230 2 577 286 11 11 chr6 17338310 17338495 -165076747 - L1M4 LINE L1 -1939 4207 4023 203 288 26 20 chr6 17338507 17338660 -165076582 + (TA)n Simple_repeat Simple_repeat 1 154 0 257 267 43 17 chr6 17338694 17338810 -165076432 - L1M4 LINE L1 -2208 3938 3820 1996 175 48 11 chr6 17339237 17339612 -165075630 + L1MC3 LINE L1 6119 7703 -82 551 183 29 0 chr6 17340278 17340382 -165074860 + L1MC3 LINE L1 7678 7784 -1 2144 126 3 0 chr6 17340538 17340832 -165074410 + AluSx SINE Alu 1 295 -17 1011 195 45 112 chr6 17341950 17342396 -165072846 - L1MC5 LINE L1 -35 7926 7511 1544 149 15 98 chr6 17343282 17343617 -165071625 - AluSq SINE Alu -6 307 1 334 285 67 36 chr6 17344126 17344263 -165070979 + MIR SINE MIR 31 175 -87 2400 118 108 8 chr6 17344263 17344652 -165070590 + MSTA LTR MaLR 1 428 0 334 285 67 36 chr6 17344652 17344679 -165070563 + MIR SINE MIR 175 200 -62 4674 62 3 10 chr6 17344706 17345284 -165069958 + L1PA8 LINE L1 5599 6172 0 1745 119 51 10 chr6 17345649 17345942 -165069300 - L1MA7 LINE L1 0 6291 5987 423 232 89 53 chr6 17346467 17346657 -165068585 - MIR SINE MIR -46 216 20 293 180 0 0 chr6 17347108 17347158 -165068084 + L2 LINE L2 3258 3307 -6 1547 140 48 62 chr6 17347259 17347502 -165067740 - MER7A DNA MER2_type -2692 346 108 1600 184 7 7 chr6 17347502 17347790 -165067452 + AluJb SINE Alu 1 288 -24 1547 140 48 62 chr6 17347790 17347838 -165067404 - MER7A DNA MER2_type -2930 108 61 238 221 183 77 chr6 17347921 17348025 -165067217 + LTR31 LTR ERV1 109 223 -396 341 234 0 0 chr6 17348054 17348118 -165067124 + MER72 LTR ERV1 377 440 -282 3373 134 51 84 chr6 17348133 17349397 -165065845 - pTR5 LTR ERV1 -143 2295 741 417 269 155 5 chr6 17349397 17349590 -165065652 + LTR31 LTR ERV1 337 558 -61 1748 158 15 130 chr6 17349600 17350061 -165065181 - LTR12 LTR ERV1 -254 460 53 239 269 0 0 chr6 17350061 17350113 -165065129 - LTR30 LTR ERV1 -670 52 1 229 344 0 0 chr6 17350166 17350230 -165065012 - MER7A DNA MER2_type -284 64 1 252 0 0 0 chr6 17350639 17350667 -165064575 + (A)n Simple_repeat Simple_repeat 1 28 0 2100 102 0 10 chr6 17350849 17351143 -165064099 - AluSx SINE Alu -1 311 21 2089 98 7 0 chr6 17354596 17354882 -165060360 + AluSc SINE Alu 1 288 -21 237 108 0 0 chr6 17354934 17354971 -165060271 + (AATTG)n Simple_repeat Simple_repeat 4 40 0 245 227 15 15 chr6 17356802 17356868 -165058374 + (CATA)n Simple_repeat Simple_repeat 2 67 0 407 155 0 77 chr6 17356868 17357062 -165058180 + (TA)n Simple_repeat Simple_repeat 1 179 0 213 154 31 46 chr6 17357068 17357133 -165058109 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 1595 167 10 48 chr6 17357522 17357834 -165057408 + AluJb SINE Alu 1 300 -12 308 275 19 113 chr6 17359076 17359236 -165056006 - MIR SINE MIR -10 252 108 234 0 0 0 chr6 17359538 17359564 -165055678 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1756 31 0 0 chr6 17359564 17359758 -165055484 - L1PA4 LINE L1 -10 6145 5952 205 367 16 23 chr6 17359880 17360008 -165055234 + MER5A DNA MER1_type 15 141 -48 1998 154 0 10 chr6 17360169 17360480 -165054762 - AluSx SINE Alu -4 308 1 775 218 0 0 chr6 17360518 17360651 -165054591 - FLAM_A SINE Alu 0 133 1 1123 75 0 0 chr6 17360685 17360819 -165054423 + AluY SINE Alu 1 134 -177 2395 86 0 3 chr6 17360819 17361123 -165054119 + AluY SINE Alu 1 303 -8 811 183 84 120 chr6 17361125 17361492 -165053750 - L1MC4 LINE L1 -1 8041 7688 639 229 65 6 chr6 17362352 17362522 -165052720 - MIR SINE MIR -1 261 82 3510 183 60 93 chr6 17362609 17363452 -165051790 + L1MC5 LINE L1 6696 7565 -396 799 163 0 52 chr6 17363452 17363587 -165051655 + FLAM_C SINE Alu 5 132 -1 3510 183 60 93 chr6 17363587 17363864 -165051378 + L1MC5 LINE L1 7565 7772 -189 698 233 0 8 chr6 17363864 17363997 -165051245 + FLAM_A SINE Alu 1 132 -1 3510 183 60 93 chr6 17363997 17364148 -165051094 + L1MC5 LINE L1 7772 7926 -35 1716 180 99 46 chr6 17364323 17364354 -165050888 + L1M1 LINE L1 18 46 -7519 2135 96 32 0 chr6 17364354 17364636 -165050606 + AluSp SINE Alu 1 291 -22 1716 180 99 46 chr6 17364636 17365016 -165050226 + L1M1 LINE L1 46 451 -7114 6008 150 70 54 chr6 17365020 17366776 -165048466 - pTR5 LTR ERV1 0 2438 738 1406 186 0 0 chr6 17366776 17367012 -165048230 - AluJb SINE Alu -76 236 1 2389 85 3 3 chr6 17369382 17369688 -165045554 - AluSg SINE Alu -4 306 1 538 173 10 139 chr6 17370166 17370278 -165044964 + L1MB8 LINE L1 4136 4210 -1936 718 138 81 32 chr6 17370278 17370401 -165044841 + FLAM_C SINE Alu 1 129 -4 538 173 10 139 chr6 17370401 17370496 -165044746 + L1MB8 LINE L1 4210 4316 -1830 2139 96 0 3 chr6 17370504 17370786 -165044456 + AluSx SINE Alu 15 295 -17 3362 202 52 13 chr6 17370786 17371770 -165043472 + L1MB8 LINE L1 4535 5555 -629 2507 126 8 3 chr6 17371783 17372139 -165043103 + L1PA16 LINE L1 5792 6149 -17 3429 172 1 55 chr6 17372158 17372816 -165042426 + L1MB8 LINE L1 5550 6172 -6 1159 90 13 0 chr6 17372953 17373108 -165042134 + AluJb SINE Alu 156 312 0 570 136 0 11 chr6 17373131 17373219 -165042023 + U6 snRNA snRNA 1 87 -20 277 304 22 11 chr6 17373238 17373330 -165041912 - MIR SINE MIR -99 109 17 1359 211 4 15 chr6 17374104 17374369 -165040873 - AluJb SINE Alu -50 262 1 543 249 62 28 chr6 17375294 17375471 -165039771 + MIR3 SINE MIR 12 194 -14 2278 82 3 0 chr6 17375475 17375778 -165039464 + AluSx SINE Alu 1 304 0 1596 117 91 25 chr6 17375916 17376190 -165039052 + AluSx SINE Alu 1 292 -20 1631 159 29 18 chr6 17377039 17377316 -165037926 + AluJo SINE Alu 1 280 -32 1142 163 5 0 chr6 17377328 17377512 -165037730 + AluJo SINE Alu 119 303 -9 27 49 0 0 chr6 17378367 17378408 -165036834 + AT_rich Low_complexity Low_complexity 1 41 0 1229 105 18 0 chr6 17378464 17378635 -165036607 - Charlie3 DNA MER1_type -5 2705 2532 1681 108 0 62 chr6 17428635 17428895 -164986347 + AluSg1 SINE Alu 59 302 -7 279 226 38 75 chr6 17429027 17429133 -164986109 + MER21B LTR ERV1 5 106 -757 * 352 227 0 0 chr6 17429131 17429197 -164986045 + MER21B LTR ERV1 19 84 -779 333 203 16 0 chr6 17429204 17429268 -164985974 + MER21B LTR ERV1 42 106 -757 * 1188 257 57 33 chr6 17429266 17429715 -164985527 + MER21B LTR ERV1 19 492 -371 1754 203 37 6 chr6 17429929 17430283 -164984959 - MLT1A1 LTR MaLR 0 365 1 257 250 59 0 chr6 17430309 17430377 -164984865 + MIR SINE MIR 81 152 -56 2637 75 94 17 chr6 17431355 17431771 -164983471 - LTR7 LTR ERV1 -2 448 1 2176 108 53 16 chr6 17431771 17432149 -164983093 - HERVH LTR ERV1 0 7713 7322 1378 120 18 5 chr6 17432147 17432364 -164982878 - HERVH LTR ERV1 -1894 5819 5600 * 4299 143 0 1 chr6 17432365 17433028 -164982214 - HERVH LTR ERV1 -2564 5149 4488 3398 97 4 6 chr6 17433030 17433533 -164981709 - HERVH LTR ERV1 -3720 3993 3492 * 16417 97 20 33 chr6 17433523 17436823 -164978419 - HERVH LTR ERV1 -4423 3290 1 2712 68 95 7 chr6 17436825 17437237 -164978005 - LTR7 LTR ERV1 -2 448 1 601 256 0 0 chr6 17437474 17437595 -164977647 - FLAM_C SINE Alu -21 122 2 194 337 74 0 chr6 17437641 17437736 -164977506 - MIR SINE MIR -62 146 45 225 269 0 0 chr6 17437804 17437856 -164977386 + LTR30 LTR ERV1 1 52 -670 297 109 0 22 chr6 17437856 17437902 -164977340 + LTR12 LTR ERV1 53 97 -617 2755 153 32 65 chr6 17437902 17438839 -164976403 + LTR12 LTR ERV1 57 1023 309 1989 86 76 31 chr6 17438839 17439129 -164976113 + AluY SINE Alu 1 303 -8 605 107 196 0 chr6 17439019 17439131 -164976111 + AluY SINE Alu 172 305 -6 * 2755 153 32 65 chr6 17439129 17439400 -164975842 + LTR12 LTR ERV1 1023 386 -328 2280 70 7 30 chr6 17439400 17439698 -164975544 + AluY SINE Alu 1 291 -20 2755 153 32 65 chr6 17439698 17440018 -164975224 + LTR12 LTR ERV1 385 714 0 1679 120 139 4 chr6 17440636 17440895 -164974347 - AluSx SINE Alu -15 297 4 245 185 0 56 chr6 17440917 17440971 -164974271 + MER58 DNA MER1_type 2 52 -289 899 146 13 13 chr6 17441047 17441205 -164974037 + L1MB3 LINE L1 6009 6166 -17 30 27 0 0 chr6 17441205 17441242 -164974000 + AT_rich Low_complexity Low_complexity 1 37 0 247 213 0 0 chr6 17441242 17441303 -164973939 - L1MB4 LINE L1 -28 6152 6092 32 26 0 0 chr6 17441304 17441343 -164973899 + AT_rich Low_complexity Low_complexity 1 39 0 348 316 88 10 chr6 17441463 17441656 -164973586 - MIR SINE MIR -7 255 48 1477 161 61 72 chr6 17441767 17441832 -164973410 - MLT1A1 LTR MaLR -8 357 293 2087 152 0 3 chr6 17441832 17442141 -164973101 + AluJb SINE Alu 1 308 -4 1477 161 61 72 chr6 17442141 17442436 -164972806 - MLT1A1 LTR MaLR -72 293 1 819 147 0 16 chr6 17443223 17443352 -164971890 + FLAM_C SINE Alu 1 127 -16 2117 148 0 3 chr6 17443522 17443827 -164971415 + AluJb SINE Alu 1 304 -8 750 272 204 27 chr6 17444016 17444247 -164970995 - L1ME4a LINE L1 -6 6115 5926 2263 107 16 3 chr6 17444247 17444555 -164970687 + AluSx SINE Alu 1 312 0 750 272 204 27 chr6 17444555 17445052 -164970190 - L1ME4a LINE L1 -195 5926 5258 793 170 7 22 chr6 17445146 17445281 -164969961 - FLAM_C SINE Alu 0 133 1 2378 99 0 3 chr6 17446130 17446432 -164968810 - AluSc SINE Alu -8 301 1 1796 176 0 39 chr6 17448094 17448406 -164966836 + AluJb SINE Alu 1 300 -12 2251 99 7 3 chr6 17448496 17448789 -164966453 - AluSx SINE Alu -18 294 1 220 307 40 13 chr6 17449884 17449959 -164965283 - L2 LINE L2 -3 3310 3234 333 316 58 6 chr6 17450060 17450231 -164965011 - L2 LINE L2 -232 3040 2861 202 306 82 37 chr6 17450544 17450678 -164964564 - MIR SINE MIR -35 227 88 1053 228 17 31 chr6 17451483 17451879 -164963363 - MLT1C LTR MaLR -6 384 1 203 250 0 0 chr6 17452697 17452737 -164962505 - L2 LINE L2 0 3313 3274 223 270 0 100 chr6 17452950 17453050 -164962192 + MER5A DNA MER1_type 1 90 -99 889 149 48 43 chr6 17453416 17453604 -164961638 + MER5A DNA MER1_type 1 189 0 2340 80 13 25 chr6 17453812 17454126 -164961116 - AluSg SINE Alu 0 310 1 319 246 32 87 chr6 17454687 17454813 -164960429 - L1ME4a LINE L1 -1 6120 6002 287 211 40 13 chr6 17454813 17454889 -164960353 + MIR SINE MIR 51 128 -134 2322 119 0 0 chr6 17455122 17455424 -164959818 - AluSx SINE Alu -7 305 4 2429 87 10 0 chr6 17457056 17457365 -164957877 + AluSq SINE Alu 1 312 -1 180 111 0 0 chr6 17458175 17458202 -164957040 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 2036 128 33 10 chr6 17458947 17459252 -164955990 + AluSx SINE Alu 1 312 0 319 271 112 47 chr6 17459369 17459539 -164955703 - MIR3 SINE MIR -9 199 19 4172 163 35 31 chr6 17460409 17461626 -164953616 + pTR5 LTR ERV1 761 2296 -142 197 377 66 9 chr6 17462065 17462171 -164953071 + L3 LINE CR1 1447 1558 -19 945 67 0 0 chr6 17462177 17462296 -164952946 - AluSx SINE Alu 0 312 194 1089 121 0 0 chr6 17462297 17462437 -164952805 - AluSx SINE Alu -172 141 2 2222 135 0 0 chr6 17463531 17463843 -164951399 - AluSx SINE Alu 0 312 1 1868 171 7 0 chr6 17463948 17464246 -164950996 + AluJo SINE Alu 1 300 -12 207 0 0 0 chr6 17465336 17465359 -164949883 + (TC)n Simple_repeat Simple_repeat 2 24 0 231 345 99 9 chr6 17465463 17465598 -164949644 - MIR SINE MIR -61 147 49 1935 107 0 0 chr6 17465882 17466125 -164949117 + AluSq SINE Alu 48 290 -23 200 152 43 0 chr6 17467774 17467820 -164947422 + CT-rich Low_complexity Low_complexity 3 50 0 2216 119 13 10 chr6 17468985 17469296 -164945946 - AluJb SINE Alu 0 312 1 2156 120 13 0 chr6 17469511 17469810 -164945432 - AluSx SINE Alu -9 303 1 1921 166 10 0 chr6 17470709 17471005 -164944237 - AluJo SINE Alu -13 299 1 26 50 0 0 chr6 17472882 17472922 -164942320 + AT_rich Low_complexity Low_complexity 1 40 0 269 243 114 0 chr6 17479646 17479716 -164935526 + L2 LINE L2 3153 3230 -42 2153 112 0 23 chr6 17479717 17480022 -164935220 + AluSx SINE Alu 1 298 -14 244 201 9 50 chr6 17480039 17480145 -164935097 + L1MEd LINE L1 11 163 -5956 2042 131 3 20 chr6 17480201 17480506 -164934736 + AluSq SINE Alu 1 300 -13 1181 92 0 7 chr6 17480506 17480652 -164934590 + AluSg/x SINE Alu 135 279 -33 351 0 0 0 chr6 17480652 17480691 -164934551 + (CA)n Simple_repeat Simple_repeat 1 39 0 2012 134 7 10 chr6 17481266 17481587 -164933655 + AluJo SINE Alu 1 320 0 483 273 35 51 chr6 17481620 17482024 -164933218 + L1MEd LINE L1 920 1210 -4909 1639 111 0 0 chr6 17482072 17482280 -164932962 + AluSq SINE Alu 1 208 -105 1575 100 0 27 chr6 17482330 17482550 -164932692 - AluSc SINE Alu -85 224 11 430 325 61 35 chr6 17482881 17483112 -164932130 - MIR SINE MIR -6 256 20 206 246 49 0 chr6 17483359 17483420 -164931822 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 261 86 0 0 chr6 17484101 17484136 -164931106 + Alu SINE Alu 18 52 -250 1073 55 31 0 chr6 17484344 17484472 -164930770 + AluSq/x SINE Alu 1 132 -181 757 223 34 107 chr6 17484478 17484663 -164930579 + MER87 LTR ERV1 239 391 -150 2005 134 14 7 chr6 17484663 17484955 -164930287 - AluSx SINE Alu -18 294 1 757 223 34 107 chr6 17484955 17485096 -164930146 + MER87 LTR ERV1 391 541 0 253 151 0 57 chr6 17485112 17485165 -164930077 + Alu SINE Alu 236 285 -17 216 0 0 0 chr6 17485165 17485189 -164930053 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2189 110 0 17 chr6 17485333 17485632 -164929610 - AluSx SINE Alu -14 298 5 2320 102 16 0 chr6 17486382 17486685 -164928557 - AluSx SINE Alu -4 308 1 206 244 0 0 chr6 17486744 17486785 -164928457 - L2 LINE L2 -9 3263 3223 885 276 118 34 chr6 17486884 17487427 -164927815 + L2 LINE L2 2295 3082 -231 1663 157 3 64 chr6 17487443 17487756 -164927486 - AluJo SINE Alu -18 294 1 1884 130 34 25 chr6 17487773 17488096 -164927146 + MER1B DNA MER1_type 1 326 -13 242 226 0 151 chr6 17488138 17488231 -164927011 + L2 LINE L2 3221 3299 -14 2289 115 0 6 chr6 17488239 17488551 -164926691 + AluSg SINE Alu 1 310 0 180 0 0 0 chr6 17488640 17488660 -164926582 + (T)n Simple_repeat Simple_repeat 1 20 0 2148 121 0 0 chr6 17489081 17489390 -164925852 - AluSx SINE Alu 0 311 3 1998 137 0 3 chr6 17490712 17490997 -164924245 + AluJo SINE Alu 11 294 -18 2564 161 77 4 chr6 17491015 17491519 -164923723 + L1MC2 LINE L1 5799 6339 -5 216 352 24 32 chr6 17492813 17492938 -164922304 - MIR3 SINE MIR -81 127 4 1972 150 0 10 chr6 17493707 17494020 -164921222 + AluJo SINE Alu 1 310 -2 235 234 0 0 chr6 17494050 17494097 -164921145 - MIR SINE MIR -68 140 94 2311 98 9 22 chr6 17495006 17495322 -164919920 + AluSx SINE Alu 1 312 0 1690 183 10 29 chr6 17495927 17496233 -164919009 + AluJo SINE Alu 1 300 -12 1841 166 43 116 chr6 17496648 17496886 -164918356 + MER74A LTR ERVL 1 255 -303 2329 101 0 0 chr6 17496886 17497184 -164918058 - AluSx SINE Alu -14 298 1 1841 166 43 116 chr6 17497184 17497524 -164917718 + MER74A LTR ERVL 255 537 -21 927 192 6 0 chr6 17497542 17497698 -164917544 - FAM SINE Alu -18 157 1 713 265 41 0 chr6 17497838 17498034 -164917208 - MER105 DNA DNA 0 204 1 780 21 0 0 chr6 17499400 17499494 -164915748 + (CTG)n Simple_repeat Simple_repeat 2 95 0 223 169 15 62 chr6 17500242 17500307 -164914935 + GA-rich Low_complexity Low_complexity 1 62 0 1804 117 0 64 chr6 17500428 17500726 -164914516 + AluSc SINE Alu 31 309 0 219 36 0 0 chr6 17501167 17501195 -164914047 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr6 17501839 17501866 -164913376 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 747 154 0 0 chr6 17501868 17501978 -164913264 - FLAM_C SINE Alu -26 117 8 1844 150 31 0 chr6 17502160 17502453 -164912789 - AluSx SINE Alu -10 302 1 2329 79 3 3 chr6 17502779 17503071 -164912171 - AluSx SINE Alu -20 292 1 218 204 56 0 chr6 17504158 17504212 -164911030 + GA-rich Low_complexity Low_complexity 1 57 0 517 216 288 0 chr6 17504606 17504745 -164910497 + MER5A DNA MER1_type 10 188 -1 1166 308 81 77 chr6 17505634 17506228 -164909014 + L3 LINE CR1 436 1035 -542 1787 150 86 4 chr6 17506228 17506508 -164908734 + AluJo SINE Alu 1 303 -9 1166 308 81 77 chr6 17506508 17506701 -164908541 + L3 LINE CR1 1035 1226 -351 338 278 111 50 chr6 17506720 17506900 -164908342 + L3 LINE CR1 1385 1575 -2 23 54 0 0 chr6 17507314 17507351 -164907891 + AT_rich Low_complexity Low_complexity 1 37 0 1107 238 83 45 chr6 17507370 17507815 -164907427 + MLT1C LTR MaLR 6 467 0 439 263 206 0 chr6 17507815 17507990 -164907252 - MIR SINE MIR -3 259 49 213 227 127 67 chr6 17509591 17509741 -164905501 - MIR SINE MIR -97 165 7 22 0 0 0 chr6 17509799 17509821 -164905421 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 31 chr6 17509962 17509982 -164905260 + AT_rich Low_complexity Low_complexity 1 21 -10 2252 96 0 0 chr6 17509982 17510273 -164904969 + AluY SINE Alu 1 291 -20 21 0 0 31 chr6 17510273 17510284 -164904958 + AT_rich Low_complexity Low_complexity 21 31 0 362 252 34 5 chr6 17511372 17511474 -164903768 - MIR SINE MIR -40 168 66 2433 85 0 0 chr6 17511557 17511851 -164903391 - AluSc SINE Alu -15 294 1 1221 241 108 70 chr6 17511878 17512396 -164902846 + MER77 LTR ERV1 62 599 -6 680 259 24 6 chr6 17513109 17513275 -164901967 + MER5B DNA MER1_type 10 178 0 2587 59 0 3 chr6 17513285 17513589 -164901653 - AluY SINE Alu -8 303 1 2141 92 26 29 chr6 17513648 17513954 -164901288 - AluSx SINE Alu -7 305 1 3138 170 48 50 chr6 17514059 17514812 -164900430 + L1MB3 LINE L1 5432 6182 -1 2293 71 4 4 chr6 17514834 17515136 -164900106 + AluY SINE Alu 1 302 0 467 277 18 24 chr6 17515481 17515647 -164899595 - MER58B DNA MER1_type 0 341 177 392 271 9 9 chr6 17515745 17515852 -164899390 - MER5A DNA MER1_type -82 107 1 2129 157 28 28 chr6 17516067 17516624 -164898618 + MLT2A2 LTR ERVL 3 554 0 210 37 0 0 chr6 17517829 17517856 -164897386 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1742 106 7 59 chr6 17517867 17518140 -164897102 - AluSq SINE Alu -54 259 1 23 0 0 0 chr6 17518140 17518163 -164897079 + AT_rich Low_complexity Low_complexity 1 23 0 309 238 12 12 chr6 17518414 17518498 -164896744 - AluJ/FRAM SINE Alu -1 301 218 5082 131 71 47 chr6 17518498 17519600 -164895642 + pTR5 LTR ERV1 769 2025 -413 244 298 0 0 chr6 17519600 17519694 -164895548 + LTR30 LTR ERV1 544 637 -85 1135 175 5 0 chr6 17519694 17519883 -164895359 + LTR12 LTR ERV1 369 558 -156 561 210 67 17 chr6 17519888 17520007 -164895235 - AluJo SINE Alu -58 254 130 667 248 0 0 chr6 17520011 17520136 -164895106 - AluJo SINE Alu -177 125 1 267 276 72 92 chr6 17520138 17520187 -164895055 + MIR SINE MIR 104 152 -110 1870 150 24 14 chr6 17520187 17520480 -164894762 + AluSq SINE Alu 1 296 -17 267 276 72 92 chr6 17520480 17520582 -164894660 + MIR SINE MIR 152 252 -10 312 268 43 46 chr6 17520624 17520743 -164894499 + MIR SINE MIR 10 125 -83 510 246 90 0 chr6 17520756 17520878 -164894364 + MIR SINE MIR 98 230 -32 2468 98 0 0 chr6 17520994 17521300 -164893942 + AluSc SINE Alu 1 306 -3 399 230 53 18 chr6 17521965 17522078 -164893164 + MIR SINE MIR 75 191 -71 336 271 60 84 chr6 17522522 17522571 -164892671 + MIR SINE MIR 95 144 -118 1817 155 3 23 chr6 17522571 17522874 -164892368 + AluJb SINE Alu 1 297 -15 336 271 60 84 chr6 17522874 17522990 -164892252 + MIR SINE MIR 144 256 -6 2106 140 0 16 chr6 17523159 17523473 -164891769 - AluJb SINE Alu -3 309 1 2723 160 49 13 chr6 17524445 17524971 -164890271 - MER44D DNA MER2_type 0 605 6 2237 119 0 3 chr6 17525164 17525467 -164889775 + AluSg SINE Alu 1 302 -8 333 284 83 24 chr6 17525592 17525761 -164889481 + MER5A DNA MER1_type 10 188 -1 555 240 149 7 chr6 17525772 17525926 -164889316 + MER5B DNA MER1_type 3 178 0 2191 98 25 0 chr6 17526033 17526319 -164888923 - AluY SINE Alu -16 295 3 2441 80 0 7 chr6 17527332 17527634 -164887608 - AluSx SINE Alu -12 300 1 2249 102 0 0 chr6 17528982 17529335 -164885907 - AluSx SINE Alu 0 353 1 4822 85 25 9 chr6 17529897 17530336 -164884906 + L1PB1 LINE L1 5457 5912 -239 9288 90 21 8 chr6 17530336 17531598 -164883644 + MER52C LTR ERV1 1 1278 0 4822 85 25 9 chr6 17531598 17531841 -164883401 + L1PB1 LINE L1 5912 6150 -1 180 215 169 0 chr6 17531873 17531938 -164883304 - L2 LINE L2 -1332 1982 1907 * 226 232 18 18 chr6 17531937 17531993 -164883249 - MER5B DNA MER1_type -4 174 119 24 0 0 0 chr6 17532151 17532175 -164883067 + AT_rich Low_complexity Low_complexity 1 24 0 329 252 76 42 chr6 17534975 17535094 -164880148 + L2 LINE L2 3191 3313 0 2425 65 7 0 chr6 17536075 17536367 -164878875 - AluY SINE Alu -17 294 1 563 69 0 0 chr6 17536836 17536908 -164878334 - L1PA5 LINE L1 -9 6145 6074 2307 109 0 7 chr6 17536943 17537246 -164877996 - AluSx SINE Alu -11 301 1 2430 103 0 0 chr6 17538266 17538576 -164876666 + AluSx SINE Alu 1 310 -2 249 33 0 0 chr6 17539100 17539130 -164876112 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 288 53 0 0 chr6 17539129 17539167 -164876075 + (CA)n Simple_repeat Simple_repeat 1 38 0 769 227 57 134 chr6 17539369 17539693 -164875549 + MLT1J LTR MaLR 24 293 -218 1868 122 4 11 chr6 17539693 17539963 -164875279 + AluSx SINE Alu 44 311 -1 769 227 57 134 chr6 17539963 17540167 -164875075 + MLT1J LTR MaLR 293 511 0 204 229 98 0 chr6 17540167 17540228 -164875014 - MIR3 SINE MIR -31 177 111 226 304 38 51 chr6 17541830 17541988 -164873254 - MIR SINE MIR -45 217 62 333 249 124 42 chr6 17542289 17542530 -164872712 - L1ME4a LINE L1 -2 6119 5859 1684 124 19 102 chr6 17543320 17543642 -164871600 - AluJo SINE Alu -17 295 1 1634 173 7 11 chr6 17544395 17544730 -164870512 + AluJb SINE Alu 1 334 0 2400 122 36 30 chr6 17545256 17545618 -164869624 + THE1B LTR MaLR 1 364 0 190 329 40 67 chr6 17545815 17545964 -164869278 - L2 LINE L2 -6 3266 3122 180 0 0 0 chr6 17548727 17548747 -164866495 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1421 161 37 4 chr6 17548779 17549021 -164866221 + MLT1A1 LTR MaLR 116 365 0 196 358 60 15 chr6 17549204 17549338 -164865904 - L2 LINE L2 -21 3251 3112 345 327 64 35 chr6 17550063 17550265 -164864977 - MIR SINE MIR -48 214 7 1732 158 11 7 chr6 17550283 17550602 -164864640 - AluJb SINE Alu 0 322 3 3784 102 17 4 chr6 17550636 17551158 -164864084 + L1PB1 LINE L1 5620 6148 -3 312 300 61 82 chr6 17551324 17551604 -164863638 - L2 LINE L2 0 3272 2999 220 220 0 20 chr6 17551633 17551683 -164863559 + GA-rich Low_complexity Low_complexity 4 52 0 232 217 22 0 chr6 17552005 17552051 -164863191 - L2 LINE L2 -2 3270 3224 1964 189 94 27 chr6 17552569 17552753 -164862489 + MLT1C LTR MaLR 1 171 -296 2152 98 14 0 chr6 17552753 17553039 -164862203 + AluSg SINE Alu 1 290 -20 1964 189 94 27 chr6 17553039 17553292 -164861950 + MLT1C LTR MaLR 171 467 0 872 146 7 14 chr6 17553805 17553949 -164861293 + AluJo SINE Alu 1 143 -169 483 113 0 0 chr6 17553949 17554011 -164861231 + AluY SINE Alu 188 249 -62 1155 187 14 5 chr6 17554011 17554225 -164861017 + AluJo SINE Alu 85 300 -12 885 94 0 0 chr6 17554469 17554586 -164860656 + MER30 DNA MER1_type 1 117 -113 320 321 109 64 chr6 17556180 17556279 -164858963 - L2 LINE L2 -1 3271 3178 2369 112 146 8 chr6 17556279 17556655 -164858587 + MSTA LTR MaLR 1 428 0 320 321 109 64 chr6 17556655 17556960 -164858282 - L2 LINE L2 -94 3178 2849 935 127 0 15 chr6 17558581 17558715 -164856527 - FLAM_C SINE Alu -11 132 1 363 285 81 32 chr6 17558733 17558856 -164856386 + L2 LINE L2 3144 3272 0 217 329 120 32 chr6 17559575 17559791 -164855451 - MIR SINE MIR -2 260 26 25 31 0 0 chr6 17560635 17560667 -164854575 + AT_rich Low_complexity Low_complexity 1 32 0 2433 74 0 7 chr6 17560798 17561108 -164854134 + AluSg SINE Alu 1 308 -2 284 68 0 23 chr6 17562418 17562462 -164852780 + (CA)n Simple_repeat Simple_repeat 2 44 0 2249 114 0 3 chr6 17562622 17562928 -164852314 + AluSx SINE Alu 1 305 -7 24 53 0 0 chr6 17562975 17563013 -164852229 + AT_rich Low_complexity Low_complexity 1 38 0 324 268 62 73 chr6 17563077 17563256 -164851986 + MER5B DNA MER1_type 1 177 -1 2229 114 3 0 chr6 17564242 17564539 -164850703 - AluSq SINE Alu -15 298 1 525 177 291 14 chr6 17564570 17564711 -164850531 + MER5A DNA MER1_type 1 180 -9 32 0 0 0 chr6 17564966 17564998 -164850244 + AT_rich Low_complexity Low_complexity 1 32 0 1344 190 88 4 chr6 17565005 17565268 -164849974 - AluJo SINE Alu -17 295 11 877 134 0 0 chr6 17565479 17565598 -164849644 + AluSg SINE Alu 1 119 -191 955 162 0 0 chr6 17566163 17566330 -164848912 - L1MA6 LINE L1 -4 6296 6130 669 216 162 18 chr6 17566651 17566777 -164848465 - MER63B DNA MER1_type -626 436 330 1994 76 8 8 chr6 17566777 17567041 -164848201 + AluSp SINE Alu 47 310 -3 669 216 162 18 chr6 17567041 17567136 -164848106 - MER63B DNA MER1_type -732 330 183 3264 171 17 17 chr6 17567139 17567479 -164847763 + Tigger3b DNA MER2_type 4 346 -2682 2326 92 3 13 chr6 17567479 17567784 -164847458 + AluSc SINE Alu 1 302 -7 3264 171 17 17 chr6 17567784 17568045 -164847197 + Tigger3b DNA MER2_type 345 605 -626 801 180 0 0 chr6 17568045 17568167 -164847075 + FLAM_C SINE Alu 3 124 -19 3562 117 31 75 chr6 17568168 17568834 -164846408 + Tigger3b DNA MER2_type 596 1232 0 771 259 31 0 chr6 17568836 17568998 -164846244 - MER63B DNA MER1_type -254 182 16 2022 107 26 0 chr6 17569005 17569276 -164845966 - AluSx SINE Alu -1 311 34 361 288 198 7 chr6 17569634 17569795 -164845447 - MIR SINE MIR -65 197 9 279 257 0 14 chr6 17570264 17570335 -164844907 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 893 180 40 92 chr6 17571369 17571597 -164843645 + MER20 DNA MER1_type 4 219 0 415 193 11 0 chr6 17571727 17571815 -164843427 + MER5A DNA MER1_type 18 106 -83 339 274 86 57 chr6 17571937 17572112 -164843130 + L2 LINE L2 258 437 -2877 182 322 144 34 chr6 17572386 17572504 -164842738 - L2 LINE L2 0 3272 3142 878 172 10 69 chr6 17573070 17573273 -164841969 + AluJb SINE Alu 14 204 -108 2353 100 53 42 chr6 17573577 17573936 -164841306 - THE1B LTR MaLR -1 363 1 342 0 0 0 chr6 17573989 17574027 -164841215 + (T)n Simple_repeat Simple_repeat 1 38 0 335 298 0 11 chr6 17574799 17574893 -164840349 + (CATATA)n Simple_repeat Simple_repeat 5 97 0 1946 167 0 0 chr6 17575109 17575397 -164839845 - AluJb SINE Alu -24 288 1 246 283 17 0 chr6 17576408 17576468 -164838774 + (CACG)n Simple_repeat Simple_repeat 1 61 0 5102 48 7 0 chr6 17578216 17578803 -164836439 + LTR10C LTR ERV1 1 591 0 182 294 20 0 chr6 17578869 17578920 -164836322 - MIR SINE MIR -75 133 82 193 254 8 185 chr6 17580357 17580487 -164834755 - MIR SINE MIR -122 140 34 860 194 26 7 chr6 17580502 17580657 -164834585 - FRAM SINE Alu -23 153 1 251 303 15 0 chr6 17580674 17580740 -164834502 + L2 LINE L2 3247 3313 0 2171 129 0 0 chr6 17581117 17581420 -164833822 + AluSx SINE Alu 1 303 -9 2280 118 0 3 chr6 17582589 17582902 -164832340 + AluSx SINE Alu 1 312 0 21 57 0 0 chr6 17583002 17583037 -164832205 + AT_rich Low_complexity Low_complexity 1 35 0 235 316 125 7 chr6 17583632 17583768 -164831474 + L2 LINE L2 3160 3311 -2 508 285 140 22 chr6 17584838 17585066 -164830176 - MIR SINE MIR -6 256 2 266 172 31 0 chr6 17585295 17585359 -164829883 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 21 0 0 0 chr6 17586609 17586630 -164828612 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr6 17586883 17586918 -164828324 + AT_rich Low_complexity Low_complexity 1 35 0 2247 103 3 3 chr6 17586964 17587276 -164827966 - AluSx SINE Alu 0 312 1 404 259 15 52 chr6 17588208 17588343 -164826899 + MIR SINE MIR 133 262 0 1564 186 20 30 chr6 17588780 17589081 -164826161 - AluJo SINE Alu -14 298 1 2334 96 0 0 chr6 17589181 17589484 -164825758 - AluY SINE Alu -8 303 1 210 268 113 14 chr6 17589851 17589922 -164825320 + L2 LINE L2 3236 3313 0 1985 30 0 30 chr6 17590307 17590541 -164824701 - L1PA3 LINE L1 -3 6152 5926 621 251 0 108 chr6 17590731 17590865 -164824377 + MIR SINE MIR 61 163 -99 773 202 0 0 chr6 17590865 17590994 -164824248 - FLAM_A SINE Alu -4 129 1 621 251 0 108 chr6 17590994 17591082 -164824160 + MIR SINE MIR 163 259 -3 46 19 0 0 chr6 17591171 17591224 -164824018 + AT_rich Low_complexity Low_complexity 1 53 0 237 33 0 0 chr6 17592572 17592602 -164822640 + (TC)n Simple_repeat Simple_repeat 1 30 0 279 54 0 0 chr6 17598331 17598368 -164816874 + (TG)n Simple_repeat Simple_repeat 1 37 0 183 162 0 0 chr6 17598368 17598405 -164816837 + GA-rich Low_complexity Low_complexity 2 38 0 1040 146 36 0 chr6 17598940 17599105 -164816137 - MER20 DNA MER1_type 0 219 49 2164 130 0 0 chr6 17599865 17600165 -164815077 - AluSq SINE Alu -13 300 1 596 64 13 0 chr6 17600190 17600268 -164814974 - MADE1 DNA Mariner -1 79 1 589 238 124 0 chr6 17600269 17600462 -164814780 - MIR SINE MIR -13 249 33 2232 109 30 0 chr6 17601161 17601464 -164813778 - AluSq SINE Alu -1 312 1 195 303 106 28 chr6 17601513 17601655 -164813587 - MIR SINE MIR -70 192 40 185 246 15 0 chr6 17602049 17602114 -164813128 + GA-rich Low_complexity Low_complexity 2 67 0 351 65 0 0 chr6 17602453 17602499 -164812743 + (TG)n Simple_repeat Simple_repeat 2 47 0 269 227 193 17 chr6 17603338 17603457 -164811785 - MIR SINE MIR -13 249 110 216 200 0 0 chr6 17604427 17604472 -164810770 + T-rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr6 17604879 17604909 -164810333 + AT_rich Low_complexity Low_complexity 1 30 0 342 259 94 62 chr6 17606430 17606654 -164808588 - L2 LINE L2 -5 3308 3078 935 310 54 26 chr6 17606684 17607333 -164807909 - L2 LINE L2 -711 2603 1937 575 254 39 22 chr6 17607535 17607636 -164807606 + MIR SINE MIR 78 185 -77 2318 114 0 0 chr6 17607636 17607944 -164807298 - AluSx SINE Alu -4 308 1 575 254 39 22 chr6 17607944 17608023 -164807219 + MIR SINE MIR 185 261 -1 975 270 274 8 chr6 17608041 17608985 -164806257 - L2 LINE L2 -7 3306 2103 1416 136 0 62 chr6 17609784 17610027 -164805215 - MER1B DNA MER1_type -69 228 1 230 73 24 0 chr6 17611083 17611124 -164804118 + (CGGGGG)n Simple_repeat Simple_repeat 6 47 0 2278 107 0 3 chr6 17611538 17611837 -164803405 + AluSq SINE Alu 1 298 -15 1029 127 27 7 chr6 17611846 17611996 -164803246 + AluJo SINE Alu 1 153 -159 980 166 0 0 chr6 17612259 17612416 -164802826 + AluJo SINE Alu 155 311 -1 311 320 66 53 chr6 17613542 17613786 -164801456 + HAL1b LINE L1 39 285 -1063 419 294 106 25 chr6 17613806 17614041 -164801201 + HAL1b LINE L1 346 599 -749 2026 151 0 0 chr6 17614476 17614781 -164800461 + AluSx SINE Alu 1 305 -7 1081 141 0 60 chr6 17614784 17614969 -164800273 + AluJo SINE Alu 139 312 0 28 0 0 0 chr6 17615116 17615144 -164800098 + AT_rich Low_complexity Low_complexity 1 28 0 2804 225 57 86 chr6 17615392 17615581 -164799661 + L1MC5 LINE L1 6415 6608 -1353 2538 60 0 0 chr6 17615581 17615879 -164799363 + AluY SINE Alu 1 298 -13 2804 225 57 86 chr6 17615879 17617259 -164797983 + L1MC5 LINE L1 6608 7914 -47 7254 21 0 0 chr6 17617269 17618087 -164797155 - L1PA3 LINE L1 0 6155 5338 361 295 50 14 chr6 17618207 17618346 -164796896 + MER5A DNA MER1_type 36 179 -10 34 24 0 0 chr6 17618941 17618982 -164796260 + AT_rich Low_complexity Low_complexity 1 41 0 1968 149 3 0 chr6 17618982 17619270 -164795972 - AluSx SINE Alu -23 289 1 879 160 0 0 chr6 17619272 17619403 -164795839 - AluJo/FLAM SINE Alu -181 131 1 407 292 34 52 chr6 17619754 17619987 -164795255 + L2 LINE L2 2698 2926 -388 423 143 0 23 chr6 17620189 17620322 -164794920 - L1MA4 LINE L1 -1 6299 6010 186 233 67 17 chr6 17620334 17620394 -164794848 + L2 LINE L2 3209 3271 -1 1745 163 17 7 chr6 17622932 17623220 -164792022 + AluSx SINE Alu 1 291 -21 2299 105 3 0 chr6 17623220 17623524 -164791718 + AluSp SINE Alu 1 305 -8 183 302 79 0 chr6 17624886 17624949 -164790293 + MIR SINE MIR 83 150 -58 2202 73 0 4 chr6 17624953 17625226 -164790016 + AluY SINE Alu 29 300 -11 222 91 0 0 chr6 17625324 17625357 -164789885 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2063 101 64 10 chr6 17625605 17625901 -164789341 + AluSq SINE Alu 1 312 -1 486 238 9 0 chr6 17625914 17626019 -164789223 - L2 LINE L2 -10 3303 3198 2412 175 30 4 chr6 17626959 17627476 -164787766 + L1MB7 LINE L1 5283 5843 -359 241 186 0 0 chr6 17627476 17627519 -164787723 + LTR30 LTR ERV1 1 43 -679 742 172 142 12 chr6 17627519 17627688 -164787554 + LTR12 LTR ERV1 44 234 -480 274 176 88 15 chr6 17627728 17627796 -164787446 + LTR12 LTR ERV1 205 277 -437 319 232 30 20 chr6 17627796 17627895 -164787347 + LTR30 LTR ERV1 544 643 -79 707 134 22 28 chr6 17627895 17628041 -164787201 + LTR12 LTR ERV1 301 714 0 * 38823 110 9 10 chr6 17628041 17634364 -164780878 + HERV9 LTR ERV1 79 6478 -1921 10575 96 14 11 chr6 17634368 17635852 -164779390 + HERV9 LTR ERV1 6911 8399 0 268 163 0 0 chr6 17635852 17635895 -164779347 + LTR30 LTR ERV1 1 43 -679 746 189 98 76 chr6 17635895 17636179 -164779063 + LTR12 LTR ERV1 48 285 -429 342 147 69 98 chr6 17636180 17636282 -164778960 + LTR30 LTR ERV1 379 642 -80 569 114 0 0 chr6 17636282 17636361 -164778881 + LTR12 LTR ERV1 625 703 -11 1626 214 120 20 chr6 17636362 17636820 -164778422 + L1MC1 LINE L1 5830 6333 0 2040 119 22 0 chr6 17636927 17637230 -164778012 + AluSq SINE Alu 1 309 0 2328 96 3 10 chr6 17637781 17638094 -164777148 + AluY SINE Alu 1 311 0 323 267 43 74 chr6 17638282 17638608 -164776634 + L1ME4a LINE L1 5782 6097 -24 2428 84 0 13 chr6 17639924 17640235 -164775007 - AluY SINE Alu -4 307 1 184 244 0 0 chr6 17640835 17640876 -164774366 + L2 LINE L2 3273 3313 0 210 91 0 0 chr6 17640878 17640911 -164774331 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2276 104 13 0 chr6 17641428 17641727 -164773515 + AluSq SINE Alu 1 303 -10 2480 174 50 6 chr6 17641751 17642246 -164772996 + L1MB3 LINE L1 5667 6183 0 714 162 0 9 chr6 17642474 17642585 -164772657 + FLAM_C SINE Alu 18 127 -16 279 0 0 0 chr6 17642938 17642969 -164772273 + (CA)n Simple_repeat Simple_repeat 2 32 0 276 149 0 0 chr6 17643411 17643458 -164771784 + (TG)n Simple_repeat Simple_repeat 1 47 0 312 300 132 41 chr6 17645713 17645933 -164769309 + L2 LINE L2 2715 2954 -360 733 224 178 63 chr6 17645941 17646352 -164768890 + MLT1H LTR MaLR 92 549 0 276 30 0 0 chr6 17646579 17646612 -164768630 + (CA)n Simple_repeat Simple_repeat 1 33 0 519 320 35 10 chr6 17647197 17647400 -164767842 - MIR SINE MIR -26 236 29 249 289 107 25 chr6 17647455 17647576 -164767666 - MIR SINE MIR -62 146 16 2197 94 0 11 chr6 17647618 17647895 -164767347 - AluSx SINE Alu -14 298 25 2207 121 0 10 chr6 17651617 17651924 -164763318 + AluSx SINE Alu 2 305 -7 554 245 101 79 chr6 17653975 17654253 -164760989 - L2 LINE L2 -3 3310 3027 242 323 120 53 chr6 17654713 17654846 -164760396 - MIR3 SINE MIR -40 168 27 1848 170 0 10 chr6 17655897 17656203 -164759039 + AluJb SINE Alu 1 303 -9 204 319 14 14 chr6 17656257 17656326 -164758916 - MIR SINE MIR -104 104 36 405 0 0 0 chr6 17656684 17656694 -164758548 + (TG)n Simple_repeat Simple_repeat 1 55 0 405 0 0 0 chr6 17656694 17656739 -164758503 + (TG)n Simple_repeat Simple_repeat 2 46 0 412 319 86 43 chr6 17659313 17659664 -164755578 - L2 LINE L2 -2 3311 2946 235 333 30 30 chr6 17661055 17661187 -164754055 - L3b LINE CR1 -236 1347 1216 1009 191 0 0 chr6 17661418 17661580 -164753662 + FRAM SINE Alu 1 162 -4 971 150 0 7 chr6 17661593 17661746 -164753496 - MER5A DNA MER1_type -36 153 2 201 154 0 0 chr6 17661881 17661920 -164753322 + A-rich Low_complexity Low_complexity 1 39 0 223 292 130 59 chr6 17661961 17662368 -164752874 + L2 LINE L2 1544 1979 -1335 664 324 73 32 chr6 17662466 17662837 -164752405 + MLT1K LTR MaLR 106 491 -97 1116 134 29 0 chr6 17662837 17663008 -164752234 - AluSg/x SINE Alu -5 307 132 2332 88 0 38 chr6 17663024 17663343 -164751899 - AluSq SINE Alu -6 307 1 2196 215 65 19 chr6 17663368 17663949 -164751293 + MLT1E3 LTR MaLR 1 599 -55 2079 29 0 13 chr6 17663949 17664187 -164751055 + L1PA3 LINE L1 5921 6155 0 360 152 61 0 chr6 17664219 17664285 -164750957 + MLT1E3 LTR MaLR 555 624 0 198 314 96 32 chr6 17664726 17665070 -164750172 + L2 LINE L2 2538 2902 -370 206 118 0 0 chr6 17665193 17665227 -164750015 + (T)n Simple_repeat Simple_repeat 1 34 0 230 306 107 33 chr6 17665307 17665428 -164749814 + L2 LINE L2 3141 3270 -2 21 0 0 0 chr6 17666230 17666251 -164748991 + AT_rich Low_complexity Low_complexity 1 21 0 2225 108 0 26 chr6 17667327 17667632 -164747610 + AluSx SINE Alu 1 297 -15 4924 169 17 26 chr6 17669722 17671010 -164744232 - L1MB5 LINE L1 -1 6173 4899 27 29 0 0 chr6 17671068 17671102 -164744140 + AT_rich Low_complexity Low_complexity 1 34 0 982 214 0 0 chr6 17671613 17671786 -164743456 - MER5B DNA MER1_type -5 173 1 415 308 33 33 chr6 17671937 17672119 -164743123 - MIR SINE MIR -62 200 19 198 0 0 0 chr6 17672485 17672507 -164742735 + (A)n Simple_repeat Simple_repeat 1 22 0 207 350 0 0 chr6 17672843 17672903 -164742339 + (CACG)n Simple_repeat Simple_repeat 4 63 0 * 212 250 0 0 chr6 17672860 17672904 -164742338 + (CA)n Simple_repeat Simple_repeat 1 44 0 5803 46 5 3 chr6 17673059 17673732 -164741510 - L1PA8 LINE L1 -8 6164 5491 195 158 0 26 chr6 17674640 17674678 -164740564 - MIR SINE MIR -10 252 216 286 351 91 7 chr6 17675313 17675467 -164739775 + L2 LINE L2 3106 3272 0 793 161 20 0 chr6 17675568 17675717 -164739525 - L1MB3 LINE L1 -7 6176 6025 225 94 0 0 chr6 17678675 17678707 -164736535 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 192 293 69 0 chr6 17680239 17680297 -164734945 + L2 LINE L2 2251 2312 -1002 3559 158 46 18 chr6 17680312 17680965 -164734277 + L1MB2 LINE L1 5447 6117 -54 270 357 45 0 chr6 17680966 17681078 -164734164 + L2 LINE L2 2546 2662 -652 374 178 224 0 chr6 17681082 17681189 -164734053 - L2 LINE L2 -164 3149 3019 197 220 153 147 chr6 17681938 17682088 -164733154 + MER5A DNA MER1_type 38 188 -1 1805 164 26 7 chr6 17682208 17682513 -164732729 + AluJb SINE Alu 1 311 -1 582 147 0 0 chr6 17683363 17683438 -164731804 + AluJ/FLAM SINE Alu 16 90 -222 2000 74 0 8 chr6 17686474 17686765 -164728477 + AluSc SINE Alu 28 316 0 470 246 65 116 chr6 17688149 17688442 -164726800 + MLT1J2 LTR MaLR 132 450 0 510 281 44 7 chr6 17689074 17689209 -164726033 + MIR SINE MIR 77 216 -46 22 0 0 0 chr6 17689210 17689232 -164726010 + AT_rich Low_complexity Low_complexity 1 22 0 200 397 147 0 chr6 17689275 17689391 -164725851 - L2 LINE L2 -18 3254 3122 282 368 0 0 chr6 17689422 17689539 -164725703 + (CA)n Simple_repeat Simple_repeat 2 118 0 572 265 139 25 chr6 17689692 17689930 -164725312 - L2 LINE L2 -1 3312 3048 219 36 0 0 chr6 17692871 17692899 -164722343 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2373 62 20 0 chr6 17693028 17693333 -164721909 + AluY SINE Alu 1 311 0 299 340 49 6 chr6 17693826 17693988 -164721254 + MIR3 SINE MIR 33 201 -7 22 35 0 0 chr6 17694444 17694473 -164720769 + AT_rich Low_complexity Low_complexity 1 29 0 182 255 85 0 chr6 17694525 17694572 -164720670 + L2 LINE L2 3208 3258 -14 902 129 0 0 chr6 17694824 17694948 -164720294 - FLAM_C SINE Alu -19 124 1 349 283 50 0 chr6 17695008 17695128 -164720114 - MIR SINE MIR -118 144 19 781 169 44 62 chr6 17695155 17695315 -164719927 - AluJo SINE Alu -70 242 86 404 307 102 0 chr6 17696225 17696362 -164718880 + MIR SINE MIR 22 172 -90 1984 116 4 0 chr6 17696517 17696776 -164718466 + AluSx SINE Alu 1 260 -52 215 79 26 0 chr6 17696776 17696814 -164718428 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4932 93 31 4 chr6 17696882 17697558 -164717684 + L1MA1 LINE L1 5609 6302 0 269 159 16 0 chr6 17697757 17697820 -164717422 + (TA)n Simple_repeat Simple_repeat 1 64 0 2449 83 0 0 chr6 17698229 17698531 -164716711 + AluSq SINE Alu 1 302 -11 2247 112 0 0 chr6 17699766 17700070 -164715172 + AluSx SINE Alu 2 305 -7 485 207 111 0 chr6 17700401 17700536 -164714706 - MIR SINE MIR -56 206 57 2216 113 7 0 chr6 17700643 17700936 -164714306 + AluSx SINE Alu 1 295 -17 191 401 35 21 chr6 17701701 17701843 -164713399 + L3 LINE CR1 672 815 -762 1271 125 15 10 chr6 17702320 17702520 -164712722 + L1PA13 LINE L1 5963 6163 0 2346 103 0 0 chr6 17703087 17703389 -164711853 + AluSq SINE Alu 1 302 -11 1095 224 23 0 chr6 17703693 17703912 -164711330 - MER58A DNA MER1_type 0 224 1 3263 135 19 29 chr6 17704259 17704973 -164710269 + L1MB3 LINE L1 5289 6166 0 615 254 75 30 chr6 17706197 17706398 -164708844 + MER63A DNA MER1_type 1 210 0 1858 162 32 60 chr6 17706983 17707384 -164707858 + L1MC3 LINE L1 6708 7097 -688 359 243 47 28 chr6 17707384 17707491 -164707751 + MLT1F1 LTR MaLR 35 143 -424 332 185 241 19 chr6 17707508 17707616 -164707626 + L1MC3 LINE L1 7201 7332 -453 * 361 177 0 0 chr6 17707612 17707674 -164707568 - L1MC4 LINE L1 -473 7569 7508 1539 145 31 55 chr6 17707674 17708002 -164707240 + AluJb SINE Alu 1 321 0 414 254 35 0 chr6 17708129 17708243 -164706999 + L1MC4 LINE L1 7924 8041 -1 2164 131 0 3 chr6 17709169 17709483 -164705759 + AluSq SINE Alu 1 313 0 1625 114 0 0 chr6 17709567 17709777 -164705465 + AluSq SINE Alu 1 210 -103 321 189 283 9 chr6 17709979 17710085 -164705157 + MIR SINE MIR 86 220 -42 2398 30 7 0 chr6 17710180 17710450 -164704792 - L1PA4 LINE L1 0 6155 5884 2094 110 7 0 chr6 17710450 17710732 -164704510 - AluSx SINE Alu -28 284 1 816 238 54 18 chr6 17711912 17711971 -164703271 - MIR SINE MIR -3 259 204 2221 84 7 3 chr6 17711971 17712256 -164702986 - AluSx SINE Alu -24 288 3 816 238 54 18 chr6 17712256 17712419 -164702823 - MIR SINE MIR -58 204 29 233 323 24 65 chr6 17712624 17712748 -164702494 - MIR SINE MIR -63 145 79 21 0 0 0 chr6 17712781 17712802 -164702440 + AT_rich Low_complexity Low_complexity 1 21 0 441 344 89 0 chr6 17713480 17713637 -164701605 - MIR3 SINE MIR -11 197 27 2075 144 9 35 chr6 17714426 17714774 -164700468 - MER44D DNA MER2_type 0 609 1 21 36 0 0 chr6 17715148 17715176 -164700066 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 17715379 17715400 -164699842 + (A)n Simple_repeat Simple_repeat 1 21 0 366 243 58 19 chr6 17715793 17715896 -164699346 + MIR3 SINE MIR 78 184 -24 200 267 185 37 chr6 17718045 17718180 -164697062 - MIR3 SINE MIR -32 176 22 236 227 0 121 chr6 17718269 17718335 -164696907 + MIR SINE MIR 18 75 -133 1835 205 65 23 chr6 17719242 17719685 -164695557 - MLT1C LTR MaLR 0 467 6 7408 143 32 18 chr6 17719707 17720391 -164694851 - Tigger3b DNA MER2_type -1797 1231 521 2026 116 10 10 chr6 17720391 17720706 -164694536 + AluSx SINE Alu 4 312 0 7408 143 32 18 chr6 17720706 17721235 -164694007 - Tigger3b DNA MER2_type -2507 521 1 2228 106 7 0 chr6 17721362 17721664 -164693578 + AluSp SINE Alu 1 304 -9 1431 136 4 26 chr6 17721671 17721899 -164693343 + L1PA8A LINE L1 5909 6131 0 416 293 23 2 chr6 17722330 17722486 -164692756 - MIR SINE MIR -63 145 17 300 269 138 28 chr6 17722631 17722776 -164692466 - MIR SINE MIR -70 192 32 206 341 0 12 chr6 17723420 17723505 -164691737 + L2 LINE L2 2228 2311 -1003 398 308 17 0 chr6 17725259 17725379 -164689863 + L2 LINE L2 3190 3311 -2 2294 94 0 7 chr6 17726202 17726500 -164688742 - AluSq SINE Alu -17 296 1 1086 98 0 0 chr6 17726504 17726637 -164688605 - AluSq/x SINE Alu -180 133 1 305 171 29 29 chr6 17727093 17727163 -164688079 - MIR SINE MIR -120 142 73 503 303 154 34 chr6 17728414 17728788 -164686454 + L1MC4a LINE L1 4037 4365 -1781 2076 133 3 10 chr6 17728788 17729097 -164686145 + AluSq SINE Alu 1 307 -6 503 303 154 34 chr6 17729097 17729625 -164685617 + L1MC4a LINE L1 4365 5047 -1099 * 1283 195 16 12 chr6 17729622 17729878 -164685364 + L1MB7 LINE L1 5853 6109 -75 1095 161 6 0 chr6 17729902 17730076 -164685166 + FRAM SINE Alu 1 175 -1 228 150 0 117 chr6 17730076 17730116 -164685126 + L1MB7 LINE L1 6132 6164 -20 1799 156 20 13 chr6 17730116 17730417 -164684825 - AluJo SINE Alu -9 303 1 228 150 0 117 chr6 17730417 17730436 -164684806 + L1MB7 LINE L1 6164 6184 0 1952 251 46 34 chr6 17730675 17731393 -164683849 + L1MC4a LINE L1 5284 6019 -102 23 33 0 0 chr6 17731598 17731628 -164683614 + AT_rich Low_complexity Low_complexity 1 30 0 1742 110 16 0 chr6 17731960 17732206 -164683036 + AluSq SINE Alu 64 313 0 2062 139 3 0 chr6 17733846 17734147 -164681095 + AluJb SINE Alu 9 310 -2 668 169 0 7 chr6 17734166 17734302 -164680940 + GA-rich Low_complexity Low_complexity 1 135 0 328 273 58 50 chr6 17735762 17735901 -164679341 + MIR SINE MIR 23 162 -100 2622 160 13 17 chr6 17736113 17736589 -164678653 + L1MB7 LINE L1 5653 6126 -58 195 100 0 0 chr6 17737301 17737331 -164677911 + (TAA)n Simple_repeat Simple_repeat 2 31 0 800 172 55 43 chr6 17738186 17738293 -164676949 - AluJo SINE Alu -77 235 131 225 0 0 0 chr6 17738293 17738318 -164676924 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2184 85 0 11 chr6 17738318 17738636 -164676606 + AluY SINE Alu 1 315 0 800 172 55 43 chr6 17738636 17738689 -164676553 - AluJo SINE Alu -180 132 71 2252 86 0 35 chr6 17740980 17741293 -164673949 + AluSx SINE Alu 1 302 -10 858 273 76 32 chr6 17741429 17741839 -164673403 + MLT1J2 LTR MaLR 1 428 -22 1075 184 0 0 chr6 17743233 17743407 -164671835 - FRAM SINE Alu -7 169 1 1805 173 0 7 chr6 17743425 17743709 -164671533 - AluJo SINE Alu -30 282 1 1845 110 7 46 chr6 17745770 17745948 -164669294 - AluSx SINE Alu -7 305 122 198 0 0 0 chr6 17745948 17745970 -164669272 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2237 74 0 11 chr6 17745970 17746255 -164668987 - AluSx SINE Alu -30 282 1 1845 110 7 46 chr6 17746255 17746357 -164668885 - AluSx SINE Alu -188 124 35 2394 230 92 70 chr6 17746366 17747253 -164667989 - L1MC4a LINE L1 -3 7805 6934 261 377 57 29 chr6 17747389 17747564 -164667678 - L2 LINE L2 -45 3227 3048 2395 107 0 0 chr6 17748988 17749298 -164665944 + AluSx SINE Alu 1 310 -2 21 57 0 0 chr6 17749415 17749450 -164665792 + AT_rich Low_complexity Low_complexity 1 35 0 617 315 25 10 chr6 17749587 17749790 -164665452 - MIR SINE MIR -50 212 7 214 304 98 11 chr6 17751137 17751229 -164664013 - MIR3 SINE MIR -21 187 88 232 162 0 0 chr6 17751495 17751532 -164663710 - L2 LINE L2 -11 3302 3266 * 241 193 121 60 chr6 17751500 17751583 -164663659 - MIR SINE MIR -10 252 165 461 70 0 14 chr6 17752942 17753013 -164662229 + (TG)n Simple_repeat Simple_repeat 1 70 0 309 333 14 14 chr6 17754022 17754163 -164661079 + L2 LINE L2 3173 3313 0 442 233 212 8 chr6 17755743 17755903 -164659339 - MIR SINE MIR -42 220 31 312 323 0 0 chr6 17755966 17756059 -164659183 - L1MC4 LINE L1 -1335 6707 6615 23 0 0 0 chr6 17756110 17756133 -164659109 + AT_rich Low_complexity Low_complexity 1 23 0 606 306 82 69 chr6 17756401 17756699 -164658543 + L1ME4a LINE L1 5426 5736 -385 1849 158 0 44 chr6 17756699 17757016 -164658226 + AluJb SINE Alu 3 305 -7 606 306 82 69 chr6 17757016 17757168 -164658074 + L1ME4a LINE L1 5736 5884 -237 306 148 0 0 chr6 17757760 17757814 -164657428 + (CA)n Simple_repeat Simple_repeat 1 54 0 336 316 52 29 chr6 17758205 17758341 -164656901 - MIR SINE MIR -4 258 120 2253 101 3 0 chr6 17758489 17758776 -164656466 + AluSc SINE Alu 5 292 -17 216 301 48 12 chr6 17759314 17759397 -164655845 + L2 LINE L2 2924 3009 -263 2179 110 7 0 chr6 17759397 17759697 -164655545 + AluSq SINE Alu 1 302 -11 364 357 36 89 chr6 17760074 17760522 -164654720 + L2 LINE L2 2849 3272 0 281 118 20 0 chr6 17760527 17760578 -164654664 + GA-rich Low_complexity Low_complexity 3 54 0 224 169 52 0 chr6 17761134 17761211 -164654031 + (TA)n Simple_repeat Simple_repeat 2 82 0 498 280 40 0 chr6 17761323 17761448 -164653794 + MIR SINE MIR 129 258 -4 1791 159 0 26 chr6 17762415 17762583 -164652659 - AluJo SINE Alu -11 301 143 1902 100 79 7 chr6 17762583 17762863 -164652379 - AluSp SINE Alu -9 304 5 1791 159 0 26 chr6 17762863 17763003 -164652239 - AluJo SINE Alu -169 143 1 198 275 175 0 chr6 17763274 17763354 -164651888 + L2 LINE L2 2942 3035 -237 283 277 100 54 chr6 17763401 17763531 -164651711 + L2 LINE L2 3137 3272 0 712 153 27 0 chr6 17764406 17764517 -164650725 - LTR12 LTR ERV1 -234 480 367 253 270 14 0 chr6 17764523 17764597 -164650645 - LTR30 LTR ERV1 -95 627 553 912 156 50 105 chr6 17764626 17764911 -164650331 - LTR12 LTR ERV1 -435 1800 55 271 211 0 0 chr6 17764911 17764963 -164650279 - LTR30 LTR ERV1 -670 52 1 732 204 22 88 chr6 17765331 17765557 -164649685 - L1ME3A LINE L1 -174 5996 5786 306 194 0 0 chr6 17765566 17765628 -164649614 + (TA)n Simple_repeat Simple_repeat 1 62 0 324 234 171 9 chr6 17766012 17766123 -164649119 - L1ME3A LINE L1 -496 5625 5528 2458 81 0 0 chr6 17766220 17766527 -164648715 - AluSc SINE Alu -2 307 1 1877 135 24 7 chr6 17767744 17768041 -164647201 - AluJo SINE Alu -10 302 1 2094 120 0 7 chr6 17769187 17769487 -164645755 - AluSx SINE Alu -14 298 1 760 165 23 28 chr6 17769720 17769896 -164645346 + L1MA7 LINE L1 6117 6291 0 322 352 56 0 chr6 17770168 17770310 -164644932 + MIR SINE MIR 30 179 -83 2281 105 0 0 chr6 17771177 17771471 -164643771 + AluSc SINE Alu 1 294 -15 2337 81 0 10 chr6 17773315 17773612 -164641630 + AluY SINE Alu 1 294 -17 2237 104 0 3 chr6 17774199 17774496 -164640746 - AluSc SINE Alu -13 296 1 185 295 98 0 chr6 17774628 17774689 -164640553 + MIR SINE MIR 84 150 -112 192 77 0 0 chr6 17774690 17774716 -164640526 + (TATAA)n Simple_repeat Simple_repeat 2 27 0 1491 195 6 35 chr6 17775956 17776274 -164638968 + AluJo SINE Alu 1 309 -3 1488 190 45 39 chr6 17776322 17776632 -164638610 - AluJo SINE Alu 0 312 1 482 260 20 41 chr6 17777018 17777164 -164638078 - MIR3 SINE MIR -9 199 57 383 295 21 74 chr6 17777505 17777592 -164637650 + MIR SINE MIR 73 146 -116 1740 145 6 68 chr6 17777592 17777916 -164637326 + AluJo SINE Alu 1 304 -8 383 295 21 74 chr6 17777916 17778018 -164637224 + MIR SINE MIR 146 252 -10 233 75 25 0 chr6 17778226 17778266 -164636976 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2306 102 0 0 chr6 17778269 17778574 -164636668 - AluY SINE Alu -6 305 1 189 0 0 0 chr6 17778614 17778635 -164636607 + (TG)n Simple_repeat Simple_repeat 2 22 0 2101 95 50 3 chr6 17778637 17778920 -164636322 - AluSq SINE Alu -17 296 1 578 253 13 27 chr6 17778936 17779086 -164636156 + MIR3 SINE MIR 57 204 -4 341 293 69 34 chr6 17781789 17781992 -164633250 + HAL1b LINE L1 71 242 -1106 270 0 0 0 chr6 17782001 17782031 -164633211 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 32 0 0 0 chr6 17782068 17782100 -164633142 + AT_rich Low_complexity Low_complexity 1 32 0 1466 181 7 27 chr6 17782488 17782786 -164632456 + AluJo SINE Alu 1 292 -20 457 273 151 62 chr6 17783468 17783596 -164631646 + L1MB3 LINE L1 2445 2560 -3586 2559 68 0 0 chr6 17783596 17783905 -164631337 - AluY SINE Alu -2 309 1 457 273 151 62 chr6 17783905 17784326 -164630916 + L1MB3 LINE L1 2560 3043 -3103 2241 98 3 7 chr6 17784360 17784655 -164630587 + AluSc SINE Alu 5 298 -11 2903 10 0 0 chr6 17784730 17785042 -164630200 + AluYb8 SINE Alu 1 312 -6 28 61 0 0 chr6 17785093 17785142 -164630100 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr6 17785231 17785259 -164629983 + AT_rich Low_complexity Low_complexity 1 28 0 1806 149 14 20 chr6 17785291 17785587 -164629655 + AluJo SINE Alu 1 294 -18 2085 117 0 7 chr6 17786387 17786707 -164628535 + AluSx SINE Alu 1 318 0 306 303 106 61 chr6 17787424 17787498 -164627744 + L1MB3 LINE L1 3998 4067 -2079 2149 118 3 7 chr6 17787498 17787795 -164627447 + AluSx SINE Alu 1 296 -16 306 303 106 61 chr6 17787795 17787984 -164627258 + L1MB3 LINE L1 4067 4273 -1873 2115 135 0 0 chr6 17788004 17788292 -164626950 + AluSx SINE Alu 1 288 -24 255 95 88 14 chr6 17788292 17788439 -164626803 + (TA)n Simple_repeat Simple_repeat 1 158 0 1791 155 49 18 chr6 17788547 17788876 -164626366 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr6 17789068 17789089 -164626153 + AT_rich Low_complexity Low_complexity 1 21 0 2007 56 0 12 chr6 17789284 17789533 -164625709 + AluY SINE Alu 56 301 -10 23 0 0 0 chr6 17789799 17789822 -164625420 + AT_rich Low_complexity Low_complexity 1 23 0 3019 63 6 0 chr6 17789822 17790188 -164625054 + L1PA8 LINE L1 5805 6172 0 2215 86 35 3 chr6 17790195 17790485 -164624757 + AluSx SINE Alu 1 299 -13 610 277 106 66 chr6 17790686 17791156 -164624086 + L1MB3 LINE L1 5293 5781 -340 792 221 35 87 chr6 17791461 17791509 -164623733 + MIR SINE MIR 22 71 -191 801 163 7 22 chr6 17791509 17791644 -164623598 + FLAM_A SINE Alu 1 133 0 792 221 35 87 chr6 17791644 17791849 -164623393 + MIR SINE MIR 71 262 0 183 42 0 0 chr6 17791983 17792007 -164623235 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 0 0 0 chr6 17792009 17792048 -164623194 + (CA)n Simple_repeat Simple_repeat 2 40 0 248 228 10 50 chr6 17792111 17792212 -164623030 - L1ME LINE L1 -385 5736 5640 2086 92 41 10 chr6 17793186 17793478 -164621764 + AluSx SINE Alu 1 301 -11 511 303 17 28 chr6 17793577 17793755 -164621487 + MIR SINE MIR 2 177 -85 248 289 180 39 chr6 17793802 17794059 -164621183 - L2 LINE L2 -25 3288 2884 221 160 0 20 chr6 17794092 17794142 -164621100 + (TGG)n Simple_repeat Simple_repeat 1 49 0 745 311 36 45 chr6 17794661 17795082 -164620160 - L1ME3A LINE L1 -226 5944 5528 246 154 339 0 chr6 17795555 17795620 -164619622 + L1MB7 LINE L1 6091 6177 -7 1450 172 43 36 chr6 17795632 17795815 -164619427 + L1MB3 LINE L1 5871 6058 -125 2258 125 0 0 chr6 17795815 17796119 -164619123 + AluSq SINE Alu 1 304 -9 1450 172 43 36 chr6 17796119 17796238 -164619004 + L1MB3 LINE L1 6058 6175 -8 350 294 0 0 chr6 17797316 17797401 -164617841 - L2 LINE L2 0 3272 3188 406 323 24 8 chr6 17797783 17797907 -164617335 + L2 LINE L2 3134 3259 -13 2138 112 0 31 chr6 17798021 17798342 -164616900 - AluSx SINE Alu -1 311 1 2023 194 18 26 chr6 17798391 17798782 -164616460 + MLT1B LTR MaLR 1 388 -2 303 251 150 70 chr6 17798839 17799026 -164616216 + MIR3 SINE MIR 3 204 -4 2312 102 0 0 chr6 17799193 17799497 -164615745 + AluSg SINE Alu 1 304 -6 6061 96 8 13 chr6 17800209 17801065 -164614177 - L1PA14 LINE L1 -3 6158 5307 1817 109 4 16 chr6 17801091 17801348 -164613894 - AluSg SINE Alu -29 281 28 21 0 0 0 chr6 17801358 17801379 -164613863 + AT_rich Low_complexity Low_complexity 1 21 0 2363 88 0 3 chr6 17801380 17801677 -164613565 + AluSq SINE Alu 1 296 -17 406 300 198 12 chr6 17802796 17803011 -164612231 - MIR SINE MIR 0 262 12 266 306 50 78 chr6 17803641 17803860 -164611382 + MIR SINE MIR 12 224 -38 1867 116 83 7 chr6 17804495 17804771 -164610471 + AluSp SINE Alu 14 310 -3 192 40 0 0 chr6 17805040 17805065 -164610177 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 455 188 69 10 chr6 17806053 17806154 -164609088 + MIR SINE MIR 82 188 -74 1467 174 105 22 chr6 17806160 17806522 -164608720 - L1MB7 LINE L1 0 6184 5793 3504 102 16 8 chr6 17806716 17807216 -164608026 + MER1A DNA MER1_type 1 529 0 443 267 34 48 chr6 17807913 17808059 -164607183 - MIR3 SINE MIR -15 193 50 5635 49 1 0 chr6 17808602 17809288 -164605954 + L1PA5 LINE L1 5501 6154 0 482 207 10 173 chr6 17809809 17809909 -164605333 - MER69A DNA AcHobo -2349 177 127 1829 163 3 7 chr6 17809909 17810215 -164605027 + AluJb SINE Alu 1 305 -7 482 207 10 173 chr6 17810215 17810322 -164604920 - MER69A DNA AcHobo -2399 127 4 258 231 0 0 chr6 17810674 17810726 -164604516 + LTR30 LTR ERV1 1 52 -670 1320 126 112 5 chr6 17810726 17810940 -164604302 + LTR12 LTR ERV1 53 289 -425 323 174 35 23 chr6 17810940 17811026 -164604216 + LTR30 LTR ERV1 556 642 -80 732 129 0 0 chr6 17811028 17811129 -164604113 + LTR12 LTR ERV1 614 714 0 1772 91 4 4 chr6 17811129 17811360 -164603882 - AluSp SINE Alu -82 231 1 14958 118 42 21 chr6 17811757 17812148 -164603094 + Tigger1 DNA MER2_type 1 382 -2036 2426 86 0 0 chr6 17812148 17812451 -164602791 + AluY SINE Alu 1 303 -8 14958 118 42 21 chr6 17812451 17813852 -164601390 + Tigger1 DNA MER2_type 382 1860 -558 2072 93 3 31 chr6 17813852 17814170 -164601072 + AluY SINE Alu 1 310 0 14958 118 42 21 chr6 17814170 17814733 -164600509 + Tigger1 DNA MER2_type 1860 2409 -9 1980 97 68 4 chr6 17814736 17815015 -164600227 + AluSq SINE Alu 3 299 -14 2082 134 7 3 chr6 17815093 17815400 -164599842 + AluJb SINE Alu 1 308 -4 1647 117 50 39 chr6 17815739 17815988 -164599254 + L1MB4 LINE L1 5884 6138 -42 2336 73 24 0 chr6 17815988 17816277 -164598965 + AluSc SINE Alu 1 296 -13 1647 117 50 39 chr6 17816277 17816308 -164598934 + L1MB4 LINE L1 6138 6167 -13 216 0 0 0 chr6 17816310 17816334 -164598908 + (TG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr6 17816346 17816380 -164598862 + AT_rich Low_complexity Low_complexity 1 34 0 1372 208 10 20 chr6 17817684 17817982 -164597260 + AluJo SINE Alu 1 295 -17 186 263 53 0 chr6 17818040 17818097 -164597145 + L2 LINE L2 2715 2774 -540 251 284 156 0 chr6 17818112 17818221 -164597021 + MIR SINE MIR 124 249 -13 222 319 83 58 chr6 17818262 17818538 -164596704 + L2 LINE L2 2825 3107 -165 219 36 0 0 chr6 17818731 17818759 -164596483 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2183 104 3 0 chr6 17818761 17819048 -164596194 - AluSg SINE Alu -22 288 1 567 291 27 0 chr6 17819052 17819200 -164596042 - MIR SINE MIR -110 152 1 1282 160 88 0 chr6 17819294 17819532 -164595710 + L1MA9 LINE L1 6054 6312 0 2192 102 3 0 chr6 17819540 17819847 -164595395 + AluSq SINE Alu 1 308 0 185 154 26 0 chr6 17820689 17820728 -164594514 + (TA)n Simple_repeat Simple_repeat 1 40 0 676 250 103 0 chr6 17821687 17821843 -164593399 - AluJb SINE Alu -4 308 137 2424 152 0 46 chr6 17822329 17822744 -164592498 + MER57A LTR ERV1 8 403 0 200 383 25 0 chr6 17822858 17822978 -164592264 - L2 LINE L2 -642 2672 2550 2221 108 0 3 chr6 17823009 17823304 -164591938 + AluSg SINE Alu 1 294 -16 376 234 126 51 chr6 17825687 17825862 -164589380 - MER5A DNA MER1_type -1 188 1 2244 116 7 3 chr6 17826010 17826313 -164588929 + AluSc SINE Alu 1 304 -5 1194 137 0 6 chr6 17826985 17827160 -164588082 + AluJo SINE Alu 1 174 -138 309 136 0 68 chr6 17827379 17827480 -164587762 + AluJ/FRAM SINE Alu 228 324 0 2366 96 0 7 chr6 17827554 17827857 -164587385 + AluSc SINE Alu 1 301 -8 2250 145 8 39 chr6 17828450 17828728 -164586514 - MER7A DNA MER2_type -2693 345 81 2514 62 0 13 chr6 17828728 17829033 -164586209 - AluY SINE Alu -10 301 1 2250 145 8 39 chr6 17829033 17829112 -164586130 - MER7A DNA MER2_type -2957 81 1 191 341 93 31 chr6 17831268 17831397 -164583845 - MIR3 SINE MIR -25 183 47 2322 115 0 0 chr6 17832579 17832883 -164582359 - AluSg SINE Alu -6 304 1 274 263 93 25 chr6 17832885 17833003 -164582239 + L1 LINE L1 4887 5012 -1134 31 58 0 0 chr6 17833033 17833085 -164582157 + AT_rich Low_complexity Low_complexity 1 52 0 529 294 55 12 chr6 17833086 17833249 -164581993 - L2 LINE L2 -503 2811 2642 1522 239 88 53 chr6 17833257 17833781 -164581461 + MLT1F LTR MaLR 1 542 0 507 301 38 0 chr6 17833823 17833956 -164581286 - MIR SINE MIR -122 140 3 2365 100 0 3 chr6 17834079 17834380 -164580862 - AluSq SINE Alu -13 300 1 2323 90 13 0 chr6 17834716 17835015 -164580227 - AluSq SINE Alu -10 303 1 937 178 0 0 chr6 17835385 17835575 -164579667 - FRAM SINE Alu 0 190 1 287 73 24 0 chr6 17836477 17836518 -164578724 + Charlie1 DNA MER1_type 2687 2728 -33 2972 174 76 20 chr6 17836521 17837292 -164577950 - Charlie1 DNA MER1_type -32 2729 41 4227 135 20 0 chr6 17837599 17838244 -164576998 - L1MA4 LINE L1 -1 6299 5642 1964 146 17 0 chr6 17838249 17838550 -164576692 - AluSc SINE Alu -3 306 1 283 346 15 15 chr6 17838816 17838946 -164576296 - MIR SINE MIR -49 213 84 1716 40 30 0 chr6 17839946 17840146 -164575096 - L1PA4 LINE L1 0 6155 5950 508 119 48 24 chr6 17840515 17840651 -164574591 - FLAM_A SINE Alu 0 142 35 1184 91 0 0 chr6 17841418 17841572 -164573670 - L1PA8 LINE L1 0 6172 6019 183 362 21 0 chr6 17842987 17843034 -164572208 - L2 LINE L2 -98 3174 3127 198 103 0 0 chr6 17843042 17843071 -164572171 + (T)n Simple_repeat Simple_repeat 1 29 0 188 138 0 0 chr6 17843260 17843289 -164571953 - L2 LINE L2 -16 3297 3269 347 269 71 43 chr6 17843727 17843868 -164571374 + MER5A DNA MER1_type 1 145 -44 1964 198 68 60 chr6 17844176 17844484 -164570758 + MLT1D LTR MaLR 1 316 -189 1924 131 22 26 chr6 17844484 17844797 -164570445 + AluSx SINE Alu 1 312 0 1964 198 68 60 chr6 17844797 17844989 -164570253 + MLT1D LTR MaLR 316 505 0 498 171 0 34 chr6 17845277 17845365 -164569877 - MER20 DNA MER1_type 0 219 135 207 0 0 0 chr6 17845395 17845418 -164569824 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 814 189 0 0 chr6 17845430 17845562 -164569680 - FRAM SINE Alu -44 132 1 823 153 13 33 chr6 17845564 17845714 -164569528 - MER20 DNA MER1_type -72 147 1 2257 83 3 52 chr6 17846079 17846403 -164568839 - AluSg SINE Alu -2 308 1 2163 125 0 25 chr6 17847345 17847664 -164567578 + AluSx SINE Alu 1 311 -1 314 184 276 0 chr6 17848245 17848343 -164566899 - L2 LINE L2 -21 3292 3168 201 371 121 17 chr6 17848798 17848914 -164566328 - L2 LINE L2 -24 3248 3121 2314 90 3 3 chr6 17850500 17850800 -164564442 + AluSq SINE Alu 1 300 -13 1122 143 0 0 chr6 17850817 17851159 -164564083 + (TGGA)n Simple_repeat Simple_repeat 1 342 0 243 262 16 0 chr6 17851166 17851227 -164564015 + GA-rich Low_complexity Low_complexity 3 64 0 26 50 0 0 chr6 17851685 17851725 -164563517 + AT_rich Low_complexity Low_complexity 1 40 0 2375 92 0 0 chr6 17853950 17854243 -164560999 - AluSx SINE Alu -19 293 1 271 78 7 0 chr6 17856218 17856274 -164558968 - Alu SINE Alu -28 272 238 331 252 209 0 chr6 17856289 17856404 -164558838 - MIR3 SINE MIR -46 162 24 306 125 0 0 chr6 17856767 17856815 -164558427 + (CA)n Simple_repeat Simple_repeat 2 49 0 192 200 22 22 chr6 17858547 17858592 -164556650 - L2 LINE L2 -11 3261 3217 342 0 0 0 chr6 17859404 17859442 -164555800 + (CA)n Simple_repeat Simple_repeat 2 39 0 338 245 14 14 chr6 17860676 17860819 -164554423 + (TG)n Simple_repeat Simple_repeat 2 144 0 32 0 0 0 chr6 17861027 17861059 -164554183 + AT_rich Low_complexity Low_complexity 1 32 0 1007 169 12 0 chr6 17861067 17861239 -164554003 - AluJo SINE Alu -19 293 120 640 120 0 0 chr6 17861258 17861358 -164553884 - FLAM_C SINE Alu 0 143 44 1140 169 14 59 chr6 17861365 17861655 -164553587 - L1MA7 LINE L1 -3 6288 6012 486 212 159 0 chr6 17861839 17861952 -164553290 - FLAM_A SINE Alu -2 131 1 300 279 39 54 chr6 17862394 17862523 -164552719 - MIR3 SINE MIR -4 204 78 356 284 61 20 chr6 17862938 17863086 -164552156 + L2 LINE L2 3160 3313 0 870 192 106 10 chr6 17863510 17863708 -164551534 + MLT1A1 LTR MaLR 1 217 -148 2125 78 30 0 chr6 17863728 17863998 -164551244 + AluSx SINE Alu 1 278 -34 21 0 0 0 chr6 17864354 17864375 -164550867 + AT_rich Low_complexity Low_complexity 1 21 0 384 253 165 29 chr6 17864450 17864620 -164550622 - MIR SINE MIR -38 224 32 671 183 82 105 chr6 17864717 17864936 -164550306 + MIR SINE MIR 5 218 -44 379 276 0 38 chr6 17864986 17865091 -164550151 + MIR SINE MIR 48 148 -114 1546 101 4 21 chr6 17865986 17866223 -164549019 - AluSc SINE Alu -1 308 76 736 301 30 33 chr6 17866407 17866709 -164548533 - L3 LINE CR1 -14 1563 1263 1096 168 20 45 chr6 17867508 17867710 -164547532 + AluJo SINE Alu 86 282 -30 258 32 0 0 chr6 17867725 17867756 -164547486 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 17870397 17870417 -164544825 + (A)n Simple_repeat Simple_repeat 1 20 0 425 351 46 6 chr6 17870452 17870626 -164544616 + MIR3 SINE MIR 19 199 -9 223 319 100 62 chr6 17873031 17873168 -164542074 + MIR3 SINE MIR 43 188 -20 10821 31 7 0 chr6 17873168 17875237 -164540005 + L1PA4 LINE L1 4077 6152 -3 223 319 100 62 chr6 17875237 17875259 -164539983 + MIR3 SINE MIR 188 208 0 334 100 0 0 chr6 17875434 17875484 -164539758 + L1MB3 LINE L1 6093 6142 -41 2155 116 3 0 chr6 17875484 17875777 -164539465 + AluSq SINE Alu 1 294 -19 261 321 28 0 chr6 17876717 17876823 -164538419 + MIR3 SINE MIR 96 204 -4 282 360 0 9 chr6 17877396 17877510 -164537732 + L2 LINE L2 3137 3249 -23 291 300 50 81 chr6 17877530 17877827 -164537415 + L2 LINE L2 2596 2883 -431 284 340 50 10 chr6 17878032 17878132 -164537110 + L2 LINE L2 3209 3312 -1 230 286 122 20 chr6 17878172 17878189 -164537053 - MIR SINE MIR -66 142 128 2169 126 3 7 chr6 17878189 17878499 -164536743 + AluSg SINE Alu 1 309 -1 230 286 122 20 chr6 17878499 17878579 -164536663 - MIR SINE MIR -80 128 35 196 352 114 0 chr6 17878704 17878792 -164536450 + L2 LINE L2 2260 2357 -957 300 271 175 22 chr6 17879087 17879316 -164535926 + L2 LINE L2 2451 2714 -600 195 42 0 0 chr6 17879644 17879668 -164535574 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 530 343 70 18 chr6 17879703 17880102 -164535140 + L1M4 LINE L1 2121 2540 -3606 357 271 60 0 chr6 17880311 17880444 -164534798 + L1ME2 LINE L1 2329 2469 -3677 2295 125 0 0 chr6 17880490 17880801 -164534441 + AluSx SINE Alu 1 311 -1 574 227 70 44 chr6 17880802 17881186 -164534056 + L1ME2 LINE L1 3118 3511 -2635 405 158 35 55 chr6 17881173 17881292 -164533950 + L1MD2 LINE L1 6035 6141 -25 * 1231 246 50 47 chr6 17881301 17881902 -164533340 + L1ME2 LINE L1 3479 4081 -2065 555 265 103 29 chr6 17881917 17882294 -164532948 + L1ME2 LINE L1 4349 4753 -1393 23 55 0 18 chr6 17882299 17882333 -164532909 + AT_rich Low_complexity Low_complexity 1 35 -19 2071 143 0 0 chr6 17882333 17882634 -164532608 - AluJo SINE Alu -11 301 1 23 55 0 18 chr6 17882634 17882654 -164532588 + AT_rich Low_complexity Low_complexity 35 54 0 732 180 50 0 chr6 17882654 17882793 -164532449 - FRAM SINE Alu -30 146 1 1023 244 127 6 chr6 17882807 17883279 -164531963 + L1ME2 LINE L1 4757 5285 -861 228 182 0 0 chr6 17883279 17883323 -164531919 + (TA)n Simple_repeat Simple_repeat 1 44 0 1435 169 12 12 chr6 17883374 17883622 -164531620 - AluJb SINE Alu -22 290 43 1305 216 29 10 chr6 17883642 17883952 -164531290 + L1ME2 LINE L1 5825 6140 -24 867 194 0 6 chr6 17885420 17885580 -164529662 + MER5A DNA MER1_type 9 167 -22 2002 131 27 0 chr6 17885622 17885920 -164529322 + AluSx SINE Alu 1 306 -6 428 0 19 0 chr6 17885921 17885973 -164529269 + (CA)n Simple_repeat Simple_repeat 1 53 0 32 0 0 0 chr6 17886527 17886559 -164528683 + AT_rich Low_complexity Low_complexity 1 32 0 397 270 63 59 chr6 17886954 17887144 -164528098 - MIR SINE MIR -19 243 50 279 281 177 0 chr6 17887928 17888024 -164527218 + L2 LINE L2 3160 3272 0 427 275 25 17 chr6 17888181 17888301 -164526941 + MIR SINE MIR 32 152 -56 889 221 37 28 chr6 17888372 17888589 -164526653 - MER58A DNA MER1_type -5 219 1 285 235 173 12 chr6 17890764 17890845 -164524397 + L2 LINE L2 3214 3307 -6 978 204 76 25 chr6 17891447 17891761 -164523481 + MLT1C LTR MaLR 134 463 -4 602 258 79 120 chr6 17891822 17892240 -164523002 + L2 LINE L2 2913 3313 0 195 273 23 0 chr6 17892495 17892539 -164522703 + MIR SINE MIR 77 121 -87 197 294 92 28 chr6 17892609 17892718 -164522524 - L2 LINE L2 -7 3306 3191 1862 165 0 10 chr6 17893090 17893393 -164521849 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr6 17895045 17895070 -164520172 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr6 17895434 17895458 -164519784 + AT_rich Low_complexity Low_complexity 1 24 0 2263 100 3 3 chr6 17897845 17898144 -164517098 + AluSx SINE Alu 1 299 -13 2050 103 41 17 chr6 17898329 17898621 -164516621 + AluSq SINE Alu 1 299 -14 342 291 58 53 chr6 17899718 17899907 -164515335 - MIR3 SINE MIR -14 194 5 460 244 207 0 chr6 17900386 17900521 -164514721 - MIR SINE MIR -48 214 52 186 296 136 25 chr6 17900897 17900978 -164514264 - MIR3 SINE MIR -117 91 2 294 132 38 38 chr6 17901611 17901664 -164513578 + MIR SINE MIR 205 257 -5 1931 136 14 14 chr6 17901747 17902041 -164513201 + AluSx SINE Alu 1 294 -18 267 114 0 0 chr6 17902230 17902274 -164512968 + (TA)n Simple_repeat Simple_repeat 1 44 0 211 366 70 21 chr6 17902508 17902650 -164512592 - MIR3 SINE MIR -56 152 4 354 45 0 0 chr6 17903186 17903230 -164512012 + (T)n Simple_repeat Simple_repeat 1 44 0 2176 130 0 0 chr6 17904035 17904336 -164510906 + AluSx SINE Alu 1 301 -11 1791 158 3 20 chr6 17905025 17905328 -164509914 + AluJo SINE Alu 1 298 -14 1962 119 69 0 chr6 17905330 17905607 -164509635 + AluSp SINE Alu 1 296 -17 836 134 0 19 chr6 17905613 17905851 -164509391 + AluSx SINE Alu 2 291 -21 214 277 31 0 chr6 17906141 17906206 -164509036 + GA-rich Low_complexity Low_complexity 3 69 0 1884 139 51 0 chr6 17906266 17906540 -164508702 - AluSx SINE Alu -24 288 1 210 176 14 40 chr6 17906690 17906764 -164508478 + T-rich Low_complexity Low_complexity 2 73 0 730 225 182 10 chr6 17906822 17907031 -164508211 + MIR SINE MIR 2 246 -16 630 110 0 0 chr6 17907503 17907585 -164507657 + AluSg/x SINE Alu 214 295 -14 180 0 0 0 chr6 17910916 17910936 -164504306 + (A)n Simple_repeat Simple_repeat 1 20 0 875 158 0 0 chr6 17912446 17912579 -164502663 - FLAM_C SINE Alu 0 133 1 210 325 65 32 chr6 17912797 17912920 -164502322 + MIR SINE MIR 21 147 -61 318 358 64 37 chr6 17915386 17915862 -164499380 - L2 LINE L2 -162 3110 2624 332 292 168 30 chr6 17916765 17916967 -164498275 + L1ME LINE L1 5354 5583 -776 345 300 64 21 chr6 17917021 17917161 -164498081 + L1ME LINE L1 5677 5822 -299 363 23 0 0 chr6 17917680 17917724 -164497518 + (TG)n Simple_repeat Simple_repeat 2 45 0 531 267 39 37 chr6 17917776 17917963 -164497279 - MIR SINE MIR -62 146 3 528 284 53 12 chr6 17918612 17918781 -164496461 - MIR3 SINE MIR -3 205 30 185 250 0 0 chr6 17920125 17920165 -164495077 + L2 LINE L2 3179 3218 -95 746 236 5 1 chr6 17920171 17920343 -164494899 + MIR SINE MIR 24 198 -62 213 313 42 21 chr6 17921561 17921657 -164493585 + L2 LINE L2 2205 2302 -1012 2312 122 0 0 chr6 17922703 17923015 -164492227 - AluSx SINE Alu 0 312 1 603 306 54 27 chr6 17923597 17923819 -164491423 - MIR SINE MIR -28 234 7 310 290 149 26 chr6 17924063 17924218 -164491024 - MER5B DNA MER1_type 0 189 2 288 120 0 0 chr6 17925728 17925778 -164489464 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr6 17925954 17925975 -164489267 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 17927883 17927916 -164487326 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr6 17931277 17931305 -164483937 + (T)n Simple_repeat Simple_repeat 1 28 0 183 42 0 0 chr6 17931445 17931469 -164483773 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 228 246 0 0 chr6 17931725 17931782 -164483460 + (CA)n Simple_repeat Simple_repeat 1 57 0 365 294 154 89 chr6 17931848 17932790 -164482452 + L1M2 LINE L1 308 1310 -5539 327 49 0 0 chr6 17932804 17932845 -164482397 + (CA)n Simple_repeat Simple_repeat 2 42 0 362 100 17 0 chr6 17933231 17933291 -164481951 + (TCC)n Simple_repeat Simple_repeat 1 61 0 192 149 0 0 chr6 17933306 17933353 -164481889 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr6 17933491 17933515 -164481727 + GC_rich Low_complexity Low_complexity 1 24 0 406 310 168 0 chr6 17936107 17936262 -164478980 + MER5A DNA MER1_type 9 189 0 24 32 0 0 chr6 17937333 17937364 -164477878 + AT_rich Low_complexity Low_complexity 1 31 0 632 145 23 174 chr6 17938352 17938639 -164476603 + Charlie5 DNA MER1_type 23 352 -2233 1752 138 62 17 chr6 17938639 17938929 -164476313 - AluJb SINE Alu -9 303 1 632 145 23 174 chr6 17938929 17939018 -164476224 + Charlie5 DNA MER1_type 352 2585 0 1015 16 132 0 chr6 17940662 17940783 -164474459 - MER85 DNA T2_type -2 137 1 2162 192 44 26 chr6 17942109 17942568 -164472674 + MLT1C LTR MaLR 1 467 0 1536 236 121 19 chr6 17943237 17944061 -164471181 + L2 LINE L2 2403 3313 0 322 298 38 53 chr6 17944260 17944391 -164470851 - MIR SINE MIR -54 208 80 225 154 0 0 chr6 17945073 17945112 -164470130 + A-rich Low_complexity Low_complexity 1 39 0 567 254 45 57 chr6 17945944 17946121 -164469121 - MIR3 SINE MIR -19 189 15 1823 162 0 10 chr6 17946886 17947194 -164468048 - AluJo SINE Alu -7 305 1 676 48 0 0 chr6 17947301 17947384 -164467858 - L1P LINE L1 -2342 3804 3722 3246 27 27 0 chr6 17947384 17947751 -164467491 + L1PA4 LINE L1 5773 6151 -4 762 237 56 56 chr6 17948741 17949028 -164466214 + L1ME3A LINE L1 5817 6103 -67 2126 112 11 0 chr6 17949061 17949347 -164465895 + AluSx SINE Alu 1 289 -23 1045 254 116 19 chr6 17949441 17949779 -164465463 + L1ME3A LINE L1 5510 5897 -273 2200 130 0 0 chr6 17949779 17950086 -164465156 + AluSq SINE Alu 1 307 -6 1045 254 116 19 chr6 17950086 17950160 -164465082 + L1ME3A LINE L1 5897 5962 -208 1794 160 0 11 chr6 17950195 17950476 -164464766 - AluJo SINE Alu -34 278 1 378 237 23 53 chr6 17950477 17950608 -164464634 + L1ME3A LINE L1 6044 6170 0 21 0 0 0 chr6 17950718 17950739 -164464503 + AT_rich Low_complexity Low_complexity 1 21 0 273 248 174 9 chr6 17951471 17951580 -164463662 + L2 LINE L2 3186 3312 -1 1367 191 67 24 chr6 17951639 17951802 -164463440 - AluJo SINE Alu -1 311 157 213 39 0 0 chr6 17951802 17951828 -164463414 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2131 103 0 7 chr6 17951830 17952112 -164463130 - AluSx SINE Alu -32 280 1 1367 191 67 24 chr6 17952112 17952243 -164462999 - AluJo SINE Alu -155 157 1 250 306 50 50 chr6 17952422 17952588 -164462654 - MIR SINE MIR -49 213 51 504 217 167 0 chr6 17953103 17953241 -164462001 + MER5A DNA MER1_type 28 188 -1 237 139 0 0 chr6 17954882 17954925 -164460317 + (CA)n Simple_repeat Simple_repeat 2 44 0 1221 218 12 112 chr6 17955770 17956182 -164459060 + MLT1B LTR MaLR 6 376 -14 838 211 6 6 chr6 17956196 17956357 -164458885 + MLT1C LTR MaLR 307 467 0 6022 78 0 0 chr6 17956505 17957272 -164457970 + L1PA14 LINE L1 5395 6161 0 1584 194 3 3 chr6 17958025 17958339 -164456903 + AluJb SINE Alu 1 314 0 262 320 29 19 chr6 17958359 17958462 -164456780 - L2 LINE L2 -179 3093 2990 381 370 46 0 chr6 17958635 17958808 -164456434 - L2 LINE L2 -541 2773 2593 1706 180 31 63 chr6 17958850 17959233 -164456009 + MLT1A2 LTR MaLR 4 374 0 490 326 144 13 chr6 17959368 17959904 -164455338 - L2 LINE L2 -1216 2098 1493 3045 132 7 2 chr6 17959913 17960339 -164454903 - MSTA LTR MaLR 0 428 1 9799 150 39 6 chr6 17960345 17961937 -164453305 - MSTA-int LTR MaLR -7 1644 1 2979 126 19 0 chr6 17961937 17962357 -164452885 - MSTA LTR MaLR 0 428 1 451 344 122 36 chr6 17962360 17963035 -164452207 - L2 LINE L2 -1852 1462 730 2228 227 46 91 chr6 17963056 17963373 -164451869 + L1MD1 LINE L1 21 351 -6189 216 0 0 0 chr6 17963373 17963397 -164451845 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2228 227 46 91 chr6 17963397 17963937 -164451305 + L1MD1 LINE L1 351 1010 -5530 1412 170 0 5 chr6 17964008 17964226 -164451016 - Tigger3(Golem) DNA MER2_type -2812 217 1 330 104 0 0 chr6 17964226 17964274 -164450968 + L1MA9 LINE L1 6265 6312 0 1348 211 76 3 chr6 17964316 17964619 -164450623 - MLT1C LTR MaLR -90 377 53 6107 197 98 18 chr6 17964626 17966265 -164448977 + L1MD1 LINE L1 1095 2601 -3939 2230 125 0 0 chr6 17966265 17966569 -164448673 + AluSx SINE Alu 1 304 -8 6107 197 98 18 chr6 17966569 17967876 -164447366 + L1MD1 LINE L1 2601 4267 -2273 5179 178 47 20 chr6 17967879 17968328 -164446914 + L1MD1 LINE L1 5211 5646 -990 1972 121 66 0 chr6 17968328 17968617 -164446625 + AluSg SINE Alu 1 308 -2 5179 178 47 20 chr6 17968617 17969538 -164445704 + L1MD1 LINE L1 5646 6636 0 273 271 57 43 chr6 17970382 17970430 -164444812 + MIR3 SINE MIR 64 110 -98 2529 69 0 3 chr6 17970430 17970736 -164444506 - AluSg SINE Alu -5 305 1 273 271 57 43 chr6 17970736 17970827 -164444415 + MIR3 SINE MIR 110 205 -3 231 170 0 0 chr6 17971064 17971111 -164444131 + T-rich Low_complexity Low_complexity 3 49 0 180 0 0 0 chr6 17973805 17973825 -164441417 + (TC)n Simple_repeat Simple_repeat 2 21 0 196 336 59 8 chr6 17976219 17976338 -164438904 + L2 LINE L2 2933 3057 -215 624 289 31 21 chr6 17976573 17976813 -164438429 - MIR SINE MIR -6 256 7 185 165 215 89 chr6 17976813 17976892 -164438350 - MER5B DNA MER1_type -3 175 87 221 305 137 0 chr6 17976899 17976994 -164438248 + L2 LINE L2 3199 3306 -7 606 245 5 58 chr6 17977019 17977207 -164438035 - MER5B DNA MER1_type 0 178 1 398 217 0 24 chr6 17977207 17977290 -164437952 - MER5B DNA MER1_type -97 81 1 738 246 60 32 chr6 17978120 17978340 -164436902 - MIR SINE MIR 0 262 38 227 358 77 57 chr6 17978783 17979225 -164436017 + L2 LINE L2 2851 3301 -12 1902 113 3 45 chr6 17979239 17979568 -164435674 - AluSx SINE Alu 0 321 5 269 164 16 33 chr6 17979677 17979738 -164435504 + LTR33 LTR ERVL 462 521 0 1509 234 33 28 chr6 17980348 17980771 -164434471 - MLT1C LTR MaLR -42 425 1 2365 195 32 24 chr6 17981353 17982002 -164433240 - L1MCa LINE L1 -4601 2144 1310 2223 183 47 14 chr6 17982006 17982493 -164432749 - L1MCa LINE L1 -4849 1196 694 285 276 11 23 chr6 17982460 17982547 -164432695 - L1MCa LINE L1 -6320 244 159 * 306 259 159 41 chr6 17982565 17982785 -164432457 - L1ME4a LINE L1 -29 6092 5847 755 262 28 33 chr6 17982885 17983099 -164432143 + MIR SINE MIR 6 218 -44 223 175 12 38 chr6 17983579 17983659 -164431583 + A-rich Low_complexity Low_complexity 4 81 0 344 357 89 24 chr6 17983921 17984212 -164431030 + L2 LINE L2 2429 2738 -576 3498 112 0 6 chr6 17984554 17985046 -164430196 + LOR1a LTR ERV1 9 497 0 192 304 196 9 chr6 17985046 17985158 -164430084 + L2 LINE L2 3137 3269 -3 361 281 10 10 chr6 17985407 17985503 -164429739 - MIR3 SINE MIR -24 184 89 212 130 0 56 chr6 17985662 17985716 -164429526 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 562 200 130 0 chr6 17986222 17986322 -164428920 - AluJo/FRAM SINE Alu -63 249 137 1781 174 20 0 chr6 17986322 17986616 -164428626 - AluJo SINE Alu -8 304 5 26 30 0 0 chr6 17987046 17987079 -164428163 + AT_rich Low_complexity Low_complexity 1 33 0 2026 143 0 0 chr6 17987083 17987363 -164427879 - AluSx SINE Alu -30 282 3 2437 57 23 10 chr6 17987385 17987685 -164427557 - AluY SINE Alu -7 304 1 458 49 0 33 chr6 17988441 17988496 -164426746 + AluY SINE Alu 2 55 -258 1483 84 0 0 chr6 17988496 17988675 -164426567 + AluSg/x SINE Alu 96 274 -36 207 0 0 0 chr6 17988682 17988705 -164426537 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 294 29 0 0 chr6 17988939 17988974 -164426268 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 27 0 0 0 chr6 17989381 17989408 -164425834 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr6 17989945 17989996 -164425246 + AT_rich Low_complexity Low_complexity 1 51 0 188 302 19 0 chr6 17990131 17990184 -164425058 - MIR SINE MIR -14 248 195 336 121 3 0 chr6 17990191 17990246 -164424996 - AluJ/FLAM SINE Alu -243 59 14 2167 106 17 0 chr6 17990311 17990604 -164424638 + AluSg SINE Alu 1 298 -12 657 86 108 0 chr6 17991809 17991902 -164423340 + AluJ SINE Alu 23 125 -187 5303 70 44 3 chr6 17991904 17992580 -164422662 - L1PA8 LINE L1 0 6172 5469 2005 93 0 0 chr6 17992582 17992860 -164422382 - L1PA8 LINE L1 -771 5375 5098 905 139 85 12 chr6 17992936 17993101 -164422141 + AluJ SINE Alu 122 298 -14 190 266 38 38 chr6 17993358 17993437 -164421805 - L2 LINE L2 0 3272 3194 195 182 18 73 chr6 17994438 17994493 -164420749 - L3 LINE CR1 -5 1572 1521 246 342 26 17 chr6 17994654 17994771 -164420471 - MIR SINE MIR -109 153 36 551 244 101 12 chr6 17995135 17995303 -164419939 - MIR SINE MIR 0 262 80 331 319 43 0 chr6 17995761 17995855 -164419387 - L2 LINE L2 -25 3247 3150 1241 172 89 0 chr6 17995859 17996062 -164419180 + MER58A DNA MER1_type 4 224 0 766 261 111 4 chr6 17996171 17996405 -164418837 - MIR SINE MIR -2 260 2 2194 106 7 3 chr6 17998197 17998490 -164416752 + AluSc SINE Alu 1 294 -15 327 172 17 0 chr6 17998811 17998869 -164416373 + MER91B DNA MER1_type 2 60 -130 16067 123 36 1 chr6 17999579 18000472 -164414770 - Tigger1 DNA MER2_type -1 2417 1557 1753 179 0 13 chr6 18000472 18000774 -164414468 - AluJo SINE Alu -14 298 1 16067 123 36 1 chr6 18000774 18002212 -164413030 - Tigger1 DNA MER2_type -861 1557 3 243 259 0 0 chr6 18002318 18002372 -164412870 + T-rich Low_complexity Low_complexity 1 54 0 227 229 13 106 chr6 18002400 18002565 -164412677 - MIR3 SINE MIR -23 185 65 221 167 24 0 chr6 18002565 18002607 -164412635 + MER5B DNA MER1_type 1 43 -135 302 309 49 37 chr6 18002635 18002797 -164412445 + MER5A DNA MER1_type 8 171 -18 * 713 159 37 37 chr6 18002665 18002828 -164412414 - MER5A DNA MER1_type -24 165 3 2406 90 0 0 chr6 18003162 18003462 -164411780 - AluY SINE Alu -11 300 1 317 349 112 0 chr6 18003687 18003839 -164411403 - L2 LINE L2 -1 3271 3103 297 257 59 22 chr6 18005435 18005571 -164409671 + L3b LINE CR1 1122 1262 -321 1193 206 19 43 chr6 18005586 18005608 -164409634 - MER33 DNA MER1_type -2268 317 296 2346 103 0 0 chr6 18005608 18005908 -164409334 + AluSq SINE Alu 1 300 -13 1193 206 19 43 chr6 18005908 18006210 -164409032 - MER33 DNA MER1_type -2289 296 1 512 217 0 9 chr6 18006332 18006438 -164408804 - MER5B DNA MER1_type -73 105 1 193 209 0 0 chr6 18006444 18006487 -164408755 + L3b LINE CR1 1371 1413 -170 238 213 33 16 chr6 18006527 18006588 -164408654 - MIR3 SINE MIR -21 187 126 219 36 0 0 chr6 18006675 18006703 -164408539 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2155 98 0 18 chr6 18006703 18006989 -164408253 - AluSq SINE Alu -32 281 1 2321 49 0 11 chr6 18007329 18007641 -164407601 - AluY SINE Alu 0 309 1 336 338 80 7 chr6 18010104 18010255 -164404987 + MIR SINE MIR 88 249 -13 234 306 0 0 chr6 18010472 18010521 -164404721 + L2 LINE L2 3186 3234 -38 479 209 39 23 chr6 18010580 18010709 -164404533 - MER69A DNA AcHobo -45 132 2 2198 90 30 13 chr6 18010987 18011287 -164403955 + AluSc SINE Alu 1 305 -4 1685 167 57 47 chr6 18011293 18011676 -164403566 - MLT1B LTR MaLR 0 390 4 264 309 21 0 chr6 18011914 18012008 -164403234 + CT-rich Low_complexity Low_complexity 1 96 0 300 300 12 0 chr6 18012263 18012343 -164402899 + MIR3 SINE MIR 112 192 -16 203 382 53 59 chr6 18012820 18012972 -164402270 - L2 LINE L2 -18 3254 3104 1150 273 68 32 chr6 18014197 18014666 -164400576 - L1ME4a LINE L1 -21 6100 5615 2427 65 3 3 chr6 18015465 18015756 -164399486 - AluSp SINE Alu -22 291 1 183 245 38 19 chr6 18015805 18015858 -164399384 - L2 LINE L2 -82 3190 3137 1003 184 163 0 chr6 18016083 18016328 -164398914 - Zaphod DNA AcHobo -13 4018 3734 246 222 122 0 chr6 18016433 18016523 -164398719 + L1ME4a LINE L1 6021 6121 0 196 340 0 39 chr6 18016678 18016781 -164398461 + L3 LINE CR1 100 198 -1379 343 318 97 9 chr6 18016907 18017135 -164398107 - MIR SINE MIR -12 250 2 21 0 0 0 chr6 18017654 18017675 -164397567 + AT_rich Low_complexity Low_complexity 1 21 0 1951 93 0 0 chr6 18017815 18018062 -164397180 + AluY SINE Alu 50 296 -15 505 150 0 0 chr6 18018464 18018544 -164396698 - MADE1 DNA Mariner 0 80 1 332 322 34 80 chr6 18019804 18019916 -164395326 - L2 LINE L2 -56 3216 3100 186 43 0 0 chr6 18019916 18019939 -164395303 + (CAA)n Simple_repeat Simple_repeat 2 24 0 332 322 34 80 chr6 18019939 18020288 -164394954 - L2 LINE L2 -172 3100 2688 420 322 99 25 chr6 18020458 18020700 -164394542 - MIR SINE MIR 0 262 3 208 100 20 20 chr6 18022446 18022496 -164392746 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 368 305 120 73 chr6 18023809 18024068 -164391174 + L3 LINE CR1 241 511 -1066 413 276 269 15 chr6 18024104 18024372 -164390870 + L3 LINE CR1 1113 1448 -129 329 270 9 49 chr6 18024827 18024998 -164390244 - MIR SINE MIR -62 146 37 2344 105 3 0 chr6 18025542 18025846 -164389396 + AluSp SINE Alu 1 305 -8 23 78 0 0 chr6 18025874 18025925 -164389317 + AT_rich Low_complexity Low_complexity 1 51 0 336 224 112 9 chr6 18028235 18028342 -164386900 + MER103 DNA DNA 3 120 -46 199 265 20 0 chr6 18028426 18028475 -164386767 - MIR SINE MIR -80 128 79 258 81 0 0 chr6 18029638 18029675 -164385567 + (CA)n Simple_repeat Simple_repeat 1 37 0 657 196 6 18 chr6 18029866 18030034 -164385208 + GA-rich Low_complexity Low_complexity 3 168 0 3249 16 0 0 chr6 18031978 18032348 -164382894 - L1HS LINE L1 -1516 4630 4261 8010 18 0 0 chr6 18032348 18033848 -164381394 + L1HS LINE L1 4654 6153 -2 348 219 0 0 chr6 18033850 18033978 -164381264 + A-rich Low_complexity Low_complexity 1 128 0 198 326 0 0 chr6 18034148 18034194 -164381048 + MIR SINE MIR 36 81 -127 191 302 58 58 chr6 18034234 18034320 -164380922 - L3b LINE CR1 -30 1553 1468 381 244 12 0 chr6 18035383 18035465 -164379777 + MLT1L LTR MaLR 118 200 -415 451 239 26 9 chr6 18035762 18035875 -164379367 + MLT1L LTR MaLR 501 615 0 185 358 11 21 chr6 18036056 18036151 -164379091 + MIR SINE MIR 45 138 -70 199 310 113 0 chr6 18036227 18036298 -164378944 - L2 LINE L2 -36 3277 3199 548 291 141 10 chr6 18037046 18037252 -164377990 + MIR SINE MIR 20 252 -10 2616 55 0 3 chr6 18037401 18037711 -164377531 - AluY SINE Alu -2 309 1 2530 80 0 0 chr6 18038795 18039106 -164376136 + AluY SINE Alu 1 311 0 221 313 0 12 chr6 18039385 18039465 -164375777 + T-rich Low_complexity Low_complexity 4 82 0 1856 139 34 7 chr6 18039485 18039779 -164375463 + AluJb SINE Alu 3 304 -8 243 0 0 0 chr6 18040685 18040712 -164374530 + (TG)n Simple_repeat Simple_repeat 1 27 0 2185 130 0 0 chr6 18041772 18042073 -164373169 + AluSx SINE Alu 1 301 -11 466 305 117 20 chr6 18042196 18042445 -164372797 + L2 LINE L2 2808 3080 -233 245 237 160 38 chr6 18042477 18042608 -164372634 - MLT1J2 LTR MaLR -50 400 254 388 185 245 13 chr6 18042650 18042765 -164372477 - MLT1J2 LTR MaLR -284 163 28 334 319 43 37 chr6 18042824 18043012 -164372230 + L2 LINE L2 3121 3309 -4 1919 132 0 0 chr6 18043053 18043326 -164371916 + AluSc SINE Alu 36 308 -1 252 0 0 0 chr6 18043345 18043373 -164371869 + (TG)n Simple_repeat Simple_repeat 2 29 0 241 299 0 0 chr6 18043374 18043441 -164371801 - L2 LINE L2 -301 2971 2905 21 0 0 0 chr6 18043569 18043590 -164371652 + AT_rich Low_complexity Low_complexity 1 21 0 1561 184 40 4 chr6 18043980 18044257 -164370985 - AluJo SINE Alu -25 287 1 200 333 58 0 chr6 18044420 18044489 -164370753 - L2 LINE L2 -62 3210 3138 290 268 79 61 chr6 18045728 18045784 -164369458 + MLT1I LTR MaLR 70 123 -286 1642 234 14 22 chr6 18045784 18045944 -164369298 - MLT1A1 LTR MaLR 0 365 205 2350 85 0 20 chr6 18045944 18046249 -164368993 - AluY SINE Alu -12 299 1 1642 234 14 22 chr6 18046249 18046456 -164368786 - MLT1A1 LTR MaLR -160 205 1 290 268 79 61 chr6 18046456 18046563 -164368679 + MLT1I LTR MaLR 123 236 -173 345 264 11 0 chr6 18046586 18046673 -164368569 + MLT1J1 LTR MaLR 345 432 -14 185 309 189 45 chr6 18047260 18047461 -164367781 + L2 LINE L2 2829 3058 -214 4933 194 47 27 chr6 18047513 18048457 -164366785 - L1MB8 LINE L1 -59 6399 5475 6823 96 12 6 chr6 18048457 18050377 -164364865 - L1PA14 LINE L1 0 6161 4233 4933 194 47 27 chr6 18050377 18051541 -164363701 - L1MB8 LINE L1 -983 5475 4252 6609 210 73 43 chr6 18051565 18051954 -164363288 - L1MB8 LINE L1 -3327 3099 2723 2353 101 0 22 chr6 18051954 18052271 -164362971 + AluY SINE Alu 1 310 -1 6609 210 73 43 chr6 18052271 18054357 -164360885 - L1MB8 LINE L1 -3703 2723 493 207 0 0 0 chr6 18054923 18054946 -164360296 + (A)n Simple_repeat Simple_repeat 1 23 0 1926 150 7 0 chr6 18054958 18055252 -164359990 - AluSx SINE Alu -16 296 1 497 247 161 0 chr6 18055359 18055533 -164359709 + MIR SINE MIR 57 258 -4 471 291 0 0 chr6 18106219 18106329 -164308913 + MER81 DNA DNA 5 114 0 4859 267 63 38 chr6 18106656 18107474 -164307768 + L1MEc LINE L1 118 914 -5482 2045 151 0 0 chr6 18107474 18107766 -164307476 + AluJb SINE Alu 1 292 -20 234 0 0 0 chr6 18107776 18107802 -164307440 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4859 267 63 38 chr6 18107802 18108021 -164307221 + L1MEc LINE L1 922 1134 -5262 1376 236 12 60 chr6 18108021 18108274 -164306968 - MSTD LTR MaLR 0 396 169 2073 122 0 3 chr6 18108274 18108562 -164306680 - AluSx SINE Alu -19 293 7 1376 236 12 60 chr6 18108562 18108724 -164306518 - MSTD LTR MaLR -227 169 1 4859 267 63 38 chr6 18108724 18109868 -164305374 + L1MEc LINE L1 1134 2367 -4029 999 275 37 62 chr6 18110227 18110710 -164304532 - L1ME LINE L1 -366 5873 5403 407 297 118 44 chr6 18110750 18110865 -164304377 - L1ME LINE L1 -818 5397 5292 2217 112 3 0 chr6 18110865 18111168 -164304074 - AluY SINE Alu -7 304 1 407 297 118 44 chr6 18111168 18111281 -164303961 - L1ME LINE L1 -923 5292 5152 607 226 0 0 chr6 18111315 18111430 -164303812 - FLAM_A SINE Alu -17 116 2 2150 120 3 3 chr6 18111524 18111824 -164303418 + AluSx SINE Alu 1 300 -12 909 263 98 63 chr6 18111826 18112743 -164302499 - L1ME LINE L1 -1114 5101 4153 375 290 79 46 chr6 18112758 18112893 -164302349 - L1ME LINE L1 -3999 2397 2268 2083 144 0 6 chr6 18112893 18113206 -164302036 - AluSx SINE Alu -1 311 1 375 290 79 46 chr6 18113206 18113550 -164301692 - L1ME LINE L1 -4128 2268 1902 226 333 12 24 chr6 18113745 18113829 -164301413 - L2 LINE L2 -679 2635 2553 33 0 0 0 chr6 18114336 18114369 -164300873 + AT_rich Low_complexity Low_complexity 1 33 0 244 272 92 34 chr6 18114413 18114484 -164300758 - HAL1 LINE L1 -116 2391 2326 2300 118 31 11 chr6 18114484 18114841 -164300401 - THE1B LTR MaLR 0 364 1 244 272 92 34 chr6 18114841 18115952 -164299290 - HAL1 LINE L1 -181 2326 1113 1733 153 0 21 chr6 18116263 18116545 -164298697 + AluJo SINE Alu 5 280 -32 468 0 0 0 chr6 18116548 18116600 -164298642 + (CA)n Simple_repeat Simple_repeat 2 53 0 333 279 0 0 chr6 18117711 18117779 -164297463 + L2 LINE L2 3201 3268 -4 227 270 235 9 chr6 18117944 18118059 -164297183 - L2 LINE L2 -9 3304 3164 606 269 81 54 chr6 18118280 18118615 -164296627 + LTR33 LTR ERVL 1 344 -177 1288 189 30 43 chr6 18118616 18119005 -164296237 + MLT2B1 LTR ERVL 2 369 -45 387 171 0 0 chr6 18119012 18119088 -164296154 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 474 207 80 20 chr6 18119088 18119238 -164296004 + LTR33 LTR ERVL 363 521 0 4046 122 20 9 chr6 18119524 18120163 -164295079 - Tigger3b DNA MER2_type 0 1232 587 3257 50 0 2 chr6 18120173 18120575 -164294667 - L1PA7 LINE L1 -453 5701 5301 3583 50 7 4 chr6 18120575 18121022 -164294220 + L1PA7 LINE L1 5693 6151 -3 2467 94 90 17 chr6 18121039 18121452 -164293790 - Tigger3b DNA MER2_type -643 588 146 638 155 0 0 chr6 18121457 18121560 -164293682 + AluSp/q SINE Alu 207 309 -4 1667 128 0 8 chr6 18122167 18122410 -164292832 + AluSx SINE Alu 40 280 -32 240 35 0 0 chr6 18122410 18122439 -164292803 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 349 261 29 7 chr6 18122451 18122589 -164292653 + L1ME3A LINE L1 5811 5951 -219 259 227 40 148 chr6 18122657 18122751 -164292491 + L1ME3A LINE L1 5965 6033 -137 2509 77 0 0 chr6 18122751 18123061 -164292181 - AluY SINE Alu -1 310 1 259 227 40 148 chr6 18123061 18123142 -164292100 + L1ME3A LINE L1 6033 6121 -49 747 69 17 9 chr6 18123276 18123392 -164291850 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2161 165 6 0 chr6 18123489 18123853 -164291389 - L1PB4 LINE L1 -2 6154 5789 270 136 0 0 chr6 18123853 18123897 -164291345 + (TG)n Simple_repeat Simple_repeat 2 45 0 455 243 28 62 chr6 18123994 18124171 -164291071 - MLT1J LTR MaLR -24 487 317 2050 142 3 0 chr6 18124927 18125222 -164290020 - AluSx SINE Alu -16 296 1 299 322 42 25 chr6 18125849 18125967 -164289275 + L2 LINE L2 3153 3272 0 852 149 186 0 chr6 18126233 18126427 -164288815 + L1MD2 LINE L1 6113 6342 -17 34 0 0 0 chr6 18126449 18126483 -164288759 + AT_rich Low_complexity Low_complexity 1 34 0 6591 76 8 0 chr6 18126619 18127543 -164287699 + L1PA13 LINE L1 5214 6144 -19 32 57 0 0 chr6 18127717 18127770 -164287472 + AT_rich Low_complexity Low_complexity 1 53 0 418 93 0 27 chr6 18128147 18128222 -164287020 - L1MA7 LINE L1 -25 6266 6194 1870 161 0 26 chr6 18128408 18128719 -164286523 + AluJb SINE Alu 3 305 -7 483 18 0 0 chr6 18130401 18130457 -164284785 + (TA)n Simple_repeat Simple_repeat 1 56 0 306 223 43 0 chr6 18131439 18131533 -164283709 - L1ME4a LINE L1 -1 6120 6023 * 4249 188 54 17 chr6 18131531 18133235 -164282007 + L1MB7 LINE L1 4381 6155 -29 406 190 115 2 chr6 18133388 18133552 -164281690 + LTR54B LTR ERV1 68 279 -219 401 266 0 47 chr6 18133742 18133911 -164281331 - MER34 LTR ERV1 -362 180 20 242 95 0 0 chr6 18134075 18134117 -164281125 + L1MB7 LINE L1 6142 6183 -1 303 28 0 0 chr6 18134248 18134284 -164280958 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 241 19 0 chr6 18134391 18134445 -164280797 - MER113 DNA MER1_type? 0 521 467 440 219 18 0 chr6 18134584 18134698 -164280544 - MER113 DNA MER1_type? -405 116 1 531 287 59 87 chr6 18136376 18136881 -164278361 - MLT1J LTR MaLR -7 504 14 479 241 88 7 chr6 18137459 18137596 -164277646 - L1MC4a LINE L1 -1965 5843 5696 23 0 0 0 chr6 18137969 18137992 -164277250 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr6 18138446 18138480 -164276762 + AT_rich Low_complexity Low_complexity 1 34 0 228 325 49 32 chr6 18139050 18139173 -164276069 - MIR SINE MIR -64 144 20 336 275 152 7 chr6 18139456 18139594 -164275648 + MIR3 SINE MIR 29 186 -22 228 143 0 0 chr6 18140367 18140409 -164274833 + (TG)n Simple_repeat Simple_repeat 2 43 0 1423 256 96 29 chr6 18140586 18140960 -164274282 - L1ME LINE L1 -4676 1864 1516 2485 96 0 0 chr6 18140960 18141272 -164273970 - AluSx SINE Alu 0 312 1 1423 256 96 29 chr6 18141272 18141869 -164273373 - L1ME LINE L1 -5024 1516 853 375 298 32 43 chr6 18142144 18142332 -164272910 - L1ME LINE L1 -5883 647 462 231 269 40 99 chr6 18142536 18142628 -164272614 + L1ME LINE L1 103 178 -5892 195 42 0 0 chr6 18142628 18142652 -164272590 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 231 269 40 99 chr6 18142652 18142760 -164272482 + L1ME LINE L1 178 291 -5779 204 40 0 0 chr6 18143875 18143900 -164271342 + (TG)n Simple_repeat Simple_repeat 2 26 0 439 351 21 21 chr6 18144384 18144575 -164270667 - MIR3 SINE MIR -6 202 12 387 209 299 8 chr6 18145945 18146079 -164269163 + MER5A DNA MER1_type 9 181 -8 185 180 20 0 chr6 18146235 18146285 -164268957 + (TA)n Simple_repeat Simple_repeat 2 52 0 250 338 0 14 chr6 18146394 18146468 -164268774 - L2 LINE L2 -46 3226 3154 194 179 0 89 chr6 18147108 18147164 -164268078 - MIR3 SINE MIR -5 203 153 394 200 0 0 chr6 18147195 18147265 -164267977 - MIR3 SINE MIR -52 156 87 4088 216 61 81 chr6 18147491 18147908 -164267334 - L1ME LINE L1 -3890 2650 2226 2110 139 0 3 chr6 18147908 18148210 -164267032 + AluSx SINE Alu 3 303 -9 4088 216 61 81 chr6 18148210 18149059 -164266183 - L1ME LINE L1 -4314 2226 1465 231 61 0 0 chr6 18149059 18149092 -164266150 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4088 216 61 81 chr6 18149092 18149637 -164265605 - L1ME LINE L1 -5075 1465 911 327 362 53 32 chr6 18150100 18150382 -164264860 - L1ME LINE L1 -6194 346 59 290 287 29 103 chr6 18150382 18150518 -164264724 - MER5B DNA MER1_type -3 175 50 735 307 46 8 chr6 18150695 18150933 -164264309 + MIR SINE MIR 6 252 -10 253 295 0 13 chr6 18150925 18151003 -164264239 - MIR3 SINE MIR -40 168 92 * 243 0 0 0 chr6 18151375 18151402 -164263840 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 266 280 102 0 chr6 18152850 18152968 -164262274 + MIR SINE MIR 63 192 -70 388 312 0 0 chr6 18153049 18153158 -164262084 - MIR SINE MIR -1 261 153 203 133 0 0 chr6 18153208 18153238 -164262004 - MIR SINE MIR -115 147 118 180 97 0 0 chr6 18153254 18153285 -164261957 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 962 177 86 38 chr6 18153400 18153609 -164261633 + MER20 DNA MER1_type 1 219 0 261 368 7 14 chr6 18154520 18154664 -164260578 + GA-rich Low_complexity Low_complexity 4 146 0 1751 178 15 15 chr6 18156237 18156569 -164258673 + L1MC1 LINE L1 5907 6238 -95 883 135 8 0 chr6 18156827 18156953 -164258289 - MER20 DNA MER1_type 0 219 93 1359 257 149 39 chr6 18158026 18158644 -164256598 + L2 LINE L2 2172 2857 -457 1369 203 11 85 chr6 18158647 18159041 -164256201 + MLT1A1 LTR MaLR 1 456 -1 864 298 91 26 chr6 18159042 18159472 -164255770 + L2 LINE L2 2856 3313 0 553 261 174 19 chr6 18159754 18159961 -164255281 - MIR SINE MIR -1 261 23 309 256 13 13 chr6 18161588 18161666 -164253576 - MER102a DNA MER1_type -3 327 250 368 314 87 37 chr6 18161744 18161921 -164253321 - MER102a DNA MER1_type -66 264 70 2409 86 3 3 chr6 18161921 18162224 -164253018 - AluSq SINE Alu -10 303 1 368 314 87 37 chr6 18162224 18162288 -164252954 - MER102a DNA MER1_type -260 70 11 236 315 185 0 chr6 18162452 18162598 -164252644 + MIR3 SINE MIR 21 193 -15 515 277 6 51 chr6 18162769 18162946 -164252296 + MER5B DNA MER1_type 10 178 0 686 253 0 0 chr6 18163315 18163477 -164251765 + MER96B DNA MER1_type? 251 412 -5 381 254 85 0 chr6 18163495 18163613 -164251629 + MIR SINE MIR 90 217 -45 306 235 209 0 chr6 18164034 18164149 -164251093 - MER5A DNA MER1_type -5 184 46 640 171 57 0 chr6 18164149 18164254 -164250988 - MER45A DNA AcHobo -1 177 67 667 162 0 0 chr6 18164352 18164451 -164250791 + AluJ/FLAM SINE Alu 1 99 -213 258 200 44 0 chr6 18164519 18164564 -164250678 - MER5A DNA MER1_type -134 55 9 991 185 77 15 chr6 18164579 18164774 -164250468 + MER3 DNA MER1_type 1 207 -2 450 0 0 0 chr6 18165011 18165061 -164250181 + (TA)n Simple_repeat Simple_repeat 2 51 0 742 155 16 28 chr6 18165570 18165894 -164249348 + GA-rich Low_complexity Low_complexity 1 320 0 248 135 0 39 chr6 18165914 18165966 -164249276 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 227 198 22 22 chr6 18165997 18166088 -164249154 + GA-rich Low_complexity Low_complexity 2 92 0 253 273 91 21 chr6 18166437 18166580 -164248662 + L1P LINE L1 4886 5038 -1108 624 279 73 49 chr6 18166601 18166858 -164248384 - L1ME LINE L1 -525 5639 5356 1815 167 0 0 chr6 18166858 18167189 -164248053 - AluJb SINE Alu 0 331 1 624 279 73 49 chr6 18167189 18167341 -164247901 - L1ME LINE L1 -808 5356 5209 2071 127 6 13 chr6 18168025 18168325 -164246917 + AluSx SINE Alu 1 300 -12 811 86 0 16 chr6 18168325 18168453 -164246789 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 2071 127 6 13 chr6 18168453 18168466 -164246776 + AluSx SINE Alu 300 312 0 358 278 25 5 chr6 18168848 18169027 -164246215 + L3 LINE CR1 1193 1456 -121 295 275 114 23 chr6 18169523 18169654 -164245588 + MIR SINE MIR 2 144 -118 313 276 75 30 chr6 18169683 18169817 -164245425 - MIR SINE MIR -36 226 87 21 0 0 0 chr6 18170989 18171010 -164244232 + AT_rich Low_complexity Low_complexity 1 21 0 225 45 68 80 chr6 18172025 18172113 -164243129 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 185 235 103 29 chr6 18174828 18174896 -164240346 + L2 LINE L2 100 172 -3142 390 274 89 36 chr6 18175227 18175581 -164239661 + L2 LINE L2 2651 3021 -251 470 288 89 25 chr6 18176635 18176871 -164238371 - L2 LINE L2 -937 2377 2127 2410 134 48 70 chr6 18177511 18177857 -164237385 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18177857 18177885 -164237357 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18177885 18177979 -164237263 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18177989 18178139 -164237103 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18178228 18178523 -164236719 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18179191 18179486 -164235756 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18181415 18181440 -164233802 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18182802 18183113 -164232129 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18184036 18184173 -164231069 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18184178 18184256 -164230986 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18184337 18184646 -164230596 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18184646 18184869 -164230373 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18185110 18185412 -164229830 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18185714 18185897 -164229345 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18185897 18186273 -164228969 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18186273 18186792 -164228450 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18186825 18186875 -164228367 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18187434 18187542 -164227700 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18187546 18188053 -164227189 + L2 LINE L2 2687 3181 -91 205 281 67 101 chr6 18189915 18190093 -164225149 + L2 LINE L2 2931 3102 -170 760 322 90 40 chr6 18190136 18190656 -164224586 - L2 LINE L2 -6 3307 2747 493 281 88 69 chr6 18190800 18191177 -164224065 + L2 LINE L2 2324 2707 -607 349 345 170 44 chr6 18191393 18191735 -164223507 + L2 LINE L2 2887 3271 -1 428 279 70 84 chr6 18192914 18193201 -164222041 - L2 LINE L2 -32 3240 2958 579 287 123 96 chr6 18194054 18194851 -164220391 + L2 LINE L2 2198 3030 -242 315 325 18 0 chr6 18194872 18194986 -164220256 + L2 LINE L2 2673 2788 -526 368 284 78 9 chr6 18195322 18195438 -164219804 - L2 LINE L2 0 3272 3149 299 282 0 12 chr6 18195550 18195635 -164219607 + L2 LINE L2 3230 3313 0 987 127 0 0 chr6 18196046 18196219 -164219023 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 2211 96 14 3 chr6 18196503 18196795 -164218447 - AluSc SINE Alu -14 295 1 341 114 0 51 chr6 18198458 18198537 -164216705 + (TC)n Simple_repeat Simple_repeat 2 76 0 385 282 63 50 chr6 18199344 18199750 -164215492 + L1ME4a LINE L1 5461 5915 -206 2492 234 65 50 chr6 18200625 18201267 -164213975 - L1M4 LINE L1 -871 5275 4644 2346 94 3 0 chr6 18201267 18201564 -164213678 - AluY SINE Alu -13 298 1 2492 234 65 50 chr6 18201564 18201838 -164213404 - L1M4 LINE L1 -1502 4644 4341 523 138 0 0 chr6 18201838 18201918 -164213324 - MADE1 DNA Mariner 0 80 1 2492 234 65 50 chr6 18201918 18201966 -164213276 - L1M4 LINE L1 -1805 4341 4295 1851 83 4 0 chr6 18201967 18202207 -164213035 - LTR12 LTR ERV1 0 714 474 1370 124 0 5 chr6 18202207 18202408 -164212834 + AluY SINE Alu 104 303 -8 1823 92 251 136 chr6 18202409 18202843 -164212399 - LTR12 LTR ERV1 -230 484 1 488 204 35 42 chr6 18202843 18202875 -164212367 - L1M4 LINE L1 -1849 4297 4266 2317 166 8 0 chr6 18202875 18203237 -164212005 + MER47A DNA MER2_type 1 365 -1 488 204 35 42 chr6 18203237 18203346 -164211896 - L1M4 LINE L1 -1880 4266 4157 846 293 111 11 chr6 18203366 18203816 -164211426 + Charlie7 DNA MER1_type 89 583 -2029 6195 133 18 28 chr6 18204025 18205530 -164209712 + L1MA4A LINE L1 4658 6143 -160 2488 93 0 0 chr6 18205530 18205842 -164209400 + AluSx SINE Alu 1 312 0 6195 133 18 28 chr6 18205842 18205983 -164209259 + L1MA4A LINE L1 6143 6284 -19 5232 91 5 33 chr6 18206494 18207153 -164208089 - L1PA14 LINE L1 -17 6144 5507 2120 138 0 0 chr6 18207153 18207458 -164207784 - AluSx SINE Alu -2 310 6 5232 91 5 33 chr6 18207458 18207564 -164207678 - L1PA14 LINE L1 -654 5507 5400 1091 342 67 33 chr6 18207769 18208530 -164206712 + L2 LINE L2 2032 2818 -496 431 313 49 0 chr6 18209389 18209533 -164205709 + L2 LINE L2 3162 3312 -1 1369 201 123 18 chr6 18209967 18210213 -164205029 + MLT1D LTR MaLR 13 304 -201 1519 188 7 11 chr6 18210213 18210490 -164204752 + AluSx SINE Alu 37 312 0 1369 201 123 18 chr6 18210490 18210576 -164204666 + MLT1D LTR MaLR 304 380 -125 435 189 22 0 chr6 18210618 18210708 -164204534 - L1MA9 LINE L1 -34 6278 6187 1371 210 30 0 chr6 18210747 18211014 -164204228 - AluSg SINE Alu -17 293 19 269 286 39 0 chr6 18211021 18211098 -164204144 - AluY SINE Alu -4 297 218 2306 190 197 59 chr6 18211111 18211951 -164203291 - LTR12 LTR ERV1 -23 1523 6 539 216 119 57 chr6 18212056 18212232 -164203010 - pTR5 LTR ERV1 -1504 934 748 1573 118 0 0 chr6 18212237 18212458 -164202784 - AluY SINE Alu -90 221 1 1314 153 54 12 chr6 18212458 18212693 -164202549 - L1MA9 LINE L1 -254 6058 5814 1084 201 0 0 chr6 18212711 18212895 -164202347 - AluJo SINE Alu -14 298 115 1251 198 119 8 chr6 18212895 18213163 -164202079 + AluJb SINE Alu 1 298 -14 1436 176 23 55 chr6 18213163 18213396 -164201846 + L1 LINE L1 4321 4541 -1605 7851 123 27 14 chr6 18213396 18213594 -164201648 + Tigger3b DNA MER2_type 2 196 -2832 2250 93 0 3 chr6 18213594 18213884 -164201358 + AluSc SINE Alu 1 289 -20 7851 123 27 14 chr6 18213884 18214899 -164200343 + Tigger3b DNA MER2_type 196 1231 0 1436 176 23 55 chr6 18214899 18215012 -164200230 + L1 LINE L1 4541 4656 -1490 301 121 103 17 chr6 18215012 18215070 -164200172 + MLT1D LTR MaLR 402 464 -41 281 98 0 20 chr6 18215325 18215376 -164199866 + (CA)n Simple_repeat Simple_repeat 2 51 0 2525 71 3 0 chr6 18216114 18216424 -164198818 + AluY SINE Alu 1 311 0 258 306 28 9 chr6 18216487 18216595 -164198647 - MIR SINE MIR -42 220 111 647 231 176 18 chr6 18217329 18217550 -164197692 - MER112 DNA MER1_type 0 256 1 6701 173 29 11 chr6 18217770 18217968 -164197274 - L1MC1 LINE L1 -9 6324 6131 2059 106 3 40 chr6 18217968 18218270 -164196972 - AluSq SINE Alu -22 291 1 6701 173 29 11 chr6 18218270 18220034 -164195208 - L1MC1 LINE L1 -202 6131 4330 2623 132 51 10 chr6 18220036 18220445 -164194797 + MSTB LTR MaLR 1 426 0 9433 185 6 7 chr6 18220445 18222083 -164193159 + MSTB-int LTR MaLR 1 1637 -14 2511 162 36 12 chr6 18222096 18222509 -164192733 + MSTB LTR MaLR 1 423 -3 1739 208 25 0 chr6 18222510 18222871 -164192371 - L1MC1 LINE L1 -1811 4335 3966 384 277 31 19 chr6 18223647 18223806 -164191436 - MIR SINE MIR -5 257 97 2113 166 52 6 chr6 18223858 18224207 -164191035 + MLT1A1 LTR MaLR 1 365 0 2236 121 0 6 chr6 18224308 18224622 -164190620 - AluSx SINE Alu 0 312 1 1313 269 53 27 chr6 18224997 18225446 -164189796 - LTR16B LTR ERVL 0 464 4 2888 161 25 42 chr6 18225584 18226113 -164189129 + MLT2B1 LTR ERVL 1 520 0 2241 168 35 38 chr6 18227082 18227535 -164187707 + MLT1C LTR MaLR 1 452 -15 198 71 0 0 chr6 18227836 18227864 -164187378 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1459 136 9 5 chr6 18230081 18230295 -164184947 + AluJb SINE Alu 87 301 -11 261 322 52 17 chr6 18230298 18230413 -164184829 + MIR SINE MIR 62 180 -82 415 206 0 62 chr6 18230653 18230750 -164184492 + L1MC5 LINE L1 7033 7123 -838 600 329 24 0 chr6 18230823 18231033 -164184209 + L2 LINE L2 2874 3088 -225 769 324 16 28 chr6 18231117 18231367 -164183875 + MIR SINE MIR 11 257 -5 447 214 137 23 chr6 18231416 18231547 -164183695 + L2 LINE L2 3167 3312 -1 197 333 76 23 chr6 18232145 18232277 -164182965 - L3 LINE CR1 -330 1247 1109 313 257 7 71 chr6 18232279 18232419 -164182823 - MER94 DNA DNA 0 134 4 1850 174 0 0 chr6 18232435 18232723 -164182519 - AluJo SINE Alu -20 292 5 791 270 72 28 chr6 18233830 18234521 -164180721 - L1ME LINE L1 -580 5582 4710 300 265 0 78 chr6 18234697 18234799 -164180443 - L1ME3A LINE L1 -115 6055 5962 811 133 0 53 chr6 18234809 18234960 -164180282 - FLAM_C SINE Alu 0 143 1 5293 221 62 54 chr6 18235016 18235797 -164179445 - L1ME1 LINE L1 -19 6147 5374 2469 75 0 0 chr6 18235797 18236138 -164179104 - AluY SINE Alu 0 311 1 5293 221 62 54 chr6 18236138 18236941 -164178301 - L1ME1 LINE L1 -792 5374 4579 2464 76 3 0 chr6 18236941 18237243 -164177999 - AluSg SINE Alu -7 303 1 5293 221 62 54 chr6 18237243 18237811 -164177431 - L1ME1 LINE L1 -1587 4579 3968 2138 113 0 0 chr6 18237811 18238134 -164177108 + AluSq SINE Alu 1 323 0 5293 221 62 54 chr6 18238134 18238509 -164176733 - L1ME1 LINE L1 -2198 3968 3598 440 309 63 34 chr6 18238957 18239263 -164175979 - L1ME LINE L1 -5876 654 65 1771 204 165 45 chr6 18239417 18240157 -164175085 - L1MC5 LINE L1 -640 7321 6478 546 307 90 26 chr6 18240292 18240869 -164174373 - HAL1b LINE L1 -525 823 210 21 71 0 0 chr6 18240938 18240980 -164174262 + AT_rich Low_complexity Low_complexity 1 42 0 50 31 0 0 chr6 18241041 18241105 -164174137 + AT_rich Low_complexity Low_complexity 1 64 0 184 216 54 68 chr6 18241625 18241699 -164173543 - MIR SINE MIR -159 103 31 198 246 0 0 chr6 18242429 18242490 -164172752 + (TA)n Simple_repeat Simple_repeat 2 62 0 346 288 130 40 chr6 18243771 18243948 -164171294 - MIR SINE MIR -50 212 20 315 294 196 39 chr6 18245785 18245989 -164169253 - MIR SINE MIR -12 250 15 4129 172 61 45 chr6 18246269 18247107 -164168135 + MER21B LTR ERV1 2 852 -11 6508 119 80 51 chr6 18247264 18247907 -164167335 + Tigger3b DNA MER2_type 1 624 -2404 1690 192 0 7 chr6 18247907 18248214 -164167028 - AluJo SINE Alu 0 305 1 6508 119 80 51 chr6 18248214 18248417 -164166825 + Tigger3b DNA MER2_type 624 820 -2208 230 81 27 0 chr6 18248417 18248454 -164166788 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 6508 119 80 51 chr6 18248454 18248523 -164166719 + Tigger3b DNA MER2_type 820 886 -2142 2176 121 10 0 chr6 18248523 18248828 -164166414 - AluSx SINE Alu -4 308 1 6508 119 80 51 chr6 18248828 18249105 -164166137 + Tigger3b DNA MER2_type 886 1231 0 1183 240 83 52 chr6 18249770 18250215 -164165027 + MLT1L LTR MaLR 126 584 -31 2203 110 7 0 chr6 18250246 18250555 -164164687 - AluSp SINE Alu -2 311 1 2184 222 14 34 chr6 18250561 18251115 -164164127 - MER74A LTR ERVL -12 546 4 1342 113 43 0 chr6 18251200 18251386 -164163856 + AluJb SINE Alu 105 298 -14 702 282 127 50 chr6 18251533 18251973 -164163269 - MLT1J LTR MaLR -35 476 3 2360 81 0 13 chr6 18252018 18252326 -164162916 - AluY SINE Alu -7 304 1 192 186 53 0 chr6 18252892 18253005 -164162237 + (TA)n Simple_repeat Simple_repeat 2 120 0 407 217 8 42 chr6 18253229 18253349 -164161893 - MIR SINE MIR 0 262 147 2096 123 0 0 chr6 18253624 18253933 -164161309 - AluSx SINE Alu 0 309 1 2320 108 16 90 chr6 18254484 18254917 -164160325 + L1MA2 LINE L1 5902 6302 -2 1318 282 82 28 chr6 18256157 18256621 -164158621 - LTR33 LTR ERVL -2 519 31 2410 134 48 70 chr6 18306980 18307326 -164107916 - Tigger2a DNA MER2_type -2275 433 98 231 36 0 0 chr6 18307326 18307354 -164107888 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2410 134 48 70 chr6 18307354 18307448 -164107794 - Tigger2a DNA MER2_type -2610 98 3 1024 127 7 0 chr6 18307458 18307608 -164107634 + AluJb SINE Alu 1 151 -161 2280 98 0 7 chr6 18307697 18307992 -164107250 - AluSg SINE Alu -17 293 1 1601 153 51 37 chr6 18308660 18308955 -164106287 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr6 18310884 18310909 -164104333 + AT_rich Low_complexity Low_complexity 1 25 0 2489 84 0 0 chr6 18312271 18312582 -164102660 - AluY SINE Alu 0 311 1 572 124 277 22 chr6 18313505 18313642 -164101600 + MLT1C LTR MaLR 6 177 -290 460 192 0 0 chr6 18313647 18313725 -164101517 + FAM SINE Alu 97 174 -11 1614 171 26 55 chr6 18313806 18314115 -164101127 + AluJb SINE Alu 1 300 -12 943 197 67 31 chr6 18314115 18314338 -164100904 + MLT1C LTR MaLR 237 467 0 2316 99 0 0 chr6 18314579 18314881 -164100361 + AluSc SINE Alu 1 302 -7 263 324 152 58 chr6 18315183 18315366 -164099876 + L2 LINE L2 1271 1435 -1879 2361 112 16 48 chr6 18315366 18315742 -164099500 + THE1B LTR MaLR 1 364 0 263 324 152 58 chr6 18315742 18316261 -164098981 + L2 LINE L2 1435 2039 -1275 186 300 0 0 chr6 18316294 18316344 -164098898 + L2 LINE L2 2218 2267 -1047 342 324 28 0 chr6 18316903 18317011 -164098231 + L2 LINE L2 3203 3313 0 294 326 63 78 chr6 18317015 18317522 -164097720 + L2 LINE L2 2687 3181 -91 226 337 60 0 chr6 18318870 18318953 -164096289 + MIR SINE MIR 67 154 -108 1607 164 32 4 chr6 18319667 18319948 -164095294 + AluJo SINE Alu 1 289 -23 387 169 0 0 chr6 18319956 18320027 -164095215 + (TA)n Simple_repeat Simple_repeat 2 72 0 384 236 71 44 chr6 18320034 18320216 -164095026 - HAL1 LINE L1 0 2507 2321 * 527 328 58 9 chr6 18320209 18320538 -164094704 - L1ME3A LINE L1 -230 5940 5596 1289 167 0 17 chr6 18320596 18320785 -164094457 - L1MA3 LINE L1 -1 6304 6113 180 0 0 0 chr6 18320785 18320805 -164094437 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1895 149 7 0 chr6 18320805 18321087 -164094155 - AluSx SINE Alu -28 284 1 1289 167 0 17 chr6 18321087 18321129 -164094113 - L1MA3 LINE L1 -190 6115 6076 1128 273 191 71 chr6 18321303 18321572 -164093670 + L2 LINE L2 1822 2057 -1257 372 132 0 0 chr6 18321572 18321625 -164093617 - AluJb SINE Alu -84 218 166 1128 273 191 71 chr6 18321625 18322186 -164093056 + L2 LINE L2 2057 2810 -504 304 289 37 70 chr6 18322338 18322525 -164092717 + L2 LINE L2 3112 3292 -21 2173 103 3 13 chr6 18322693 18322993 -164092249 - AluSx SINE Alu -15 297 1 2015 138 27 0 chr6 18323465 18323763 -164091479 + AluSx SINE Alu 3 308 -4 473 210 74 80 chr6 18324503 18324665 -164090577 + MIR SINE MIR 23 183 -79 2701 174 154 24 chr6 18324893 18325147 -164090095 + MLT1E1 LTR MaLR 1 221 -433 1885 133 3 36 chr6 18325147 18325502 -164089740 - AluSx SINE Alu 0 312 1 2701 174 154 24 chr6 18325502 18325826 -164089416 + MLT1E1 LTR MaLR 221 654 0 302 209 45 27 chr6 18325926 18326036 -164089206 - L1MEc LINE L1 -3238 2977 2866 * 2146 251 62 19 chr6 18326029 18327787 -164087455 - L1MEc LINE L1 -4423 1973 35 2518 53 0 7 chr6 18328651 18328952 -164086290 + AluY SINE Alu 1 299 -12 990 269 155 5 chr6 18329169 18329596 -164085646 + L2 LINE L2 2823 3313 0 1242 144 45 0 chr6 18329909 18330110 -164085132 + MER2 DNA MER2_type 1 210 -135 232 265 20 0 chr6 18330152 18330201 -164085041 + MER2 DNA MER2_type 283 332 -13 252 0 0 0 chr6 18330834 18330862 -164084380 + (TC)n Simple_repeat Simple_repeat 1 28 0 1714 150 32 42 chr6 18331316 18331629 -164083613 - AluJb SINE Alu -2 310 1 2488 57 7 3 chr6 18331745 18332046 -164083196 + AluY SINE Alu 1 302 -9 326 221 96 85 chr6 18332235 18332315 -164082927 - MIR SINE MIR -38 224 146 2366 102 0 3 chr6 18332315 18332628 -164082614 - AluSx SINE Alu 0 312 1 326 221 96 85 chr6 18332628 18332759 -164082483 - MIR SINE MIR -116 146 4 185 263 53 26 chr6 18332759 18332834 -164082408 + MER5A DNA MER1_type 12 88 -101 302 336 4 13 chr6 18332775 18332943 -164082299 - MER5A DNA MER1_type -19 160 4 2240 81 14 0 chr6 18334176 18334461 -164080781 + AluSq SINE Alu 3 291 -22 28 0 0 0 chr6 18334461 18334489 -164080753 + AT_rich Low_complexity Low_complexity 1 28 0 1510 206 42 13 chr6 18334868 18335178 -164080064 - MER58B DNA MER1_type -2 339 21 630 189 68 20 chr6 18335992 18336140 -164079102 + MER63 DNA MER1_type 904 1058 -4 5668 128 31 36 chr6 18336173 18336887 -164078355 - MER49 LTR ERV1 0 923 212 2131 108 3 3 chr6 18336887 18337183 -164078059 - AluSx SINE Alu -8 304 9 5668 128 31 36 chr6 18337183 18337395 -164077847 - MER49 LTR ERV1 -711 212 1 369 274 198 25 chr6 18337951 18338108 -164077134 + MIR3 SINE MIR 1 184 -24 26 64 0 0 chr6 18338109 18338156 -164077086 + AT_rich Low_complexity Low_complexity 1 47 0 282 56 0 0 chr6 18339119 18339155 -164076087 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 504 341 12 12 chr6 18339565 18339732 -164075510 - MIR3 SINE MIR -21 187 21 346 258 125 17 chr6 18339933 18340053 -164075189 + MER94 DNA DNA 1 133 -1 2406 92 0 0 chr6 18340345 18340648 -164074594 - AluSg SINE Alu -7 303 1 564 278 41 45 chr6 18341008 18341274 -164073968 + MER97c DNA MER1_type? 810 1074 -16 337 245 18 110 chr6 18341351 18341514 -164073728 + L2 LINE L2 2592 2739 -575 801 272 8 56 chr6 18341549 18341685 -164073557 + MIR SINE MIR 25 145 -117 1894 143 61 18 chr6 18341685 18342014 -164073228 - MER2 DNA MER2_type -1 343 1 801 272 8 56 chr6 18342014 18342127 -164073115 + MIR SINE MIR 145 262 0 2198 110 3 7 chr6 18342142 18342442 -164072800 + AluSp SINE Alu 1 299 -14 2215 75 4 0 chr6 18342444 18342724 -164072518 + AluY SINE Alu 22 302 -9 223 302 71 93 chr6 18342767 18343187 -164072055 + L2 LINE L2 2832 3242 -30 225 135 39 77 chr6 18343188 18343240 -164072002 - L1M3f LINE L1 -4213 1115 1066 184 315 0 19 chr6 18343746 18343800 -164071442 + L3b LINE CR1 1512 1564 -19 213 136 0 23 chr6 18344041 18344085 -164071157 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 1214 188 9 5 chr6 18344364 18344587 -164070655 - AluJb SINE Alu -2 310 87 1891 130 0 11 chr6 18345460 18345737 -164069505 - AluSq SINE Alu -1 312 39 215 176 103 0 chr6 18345753 18345821 -164069421 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 362 343 96 23 chr6 18346464 18346910 -164068332 + L2 LINE L2 2524 3004 -309 774 200 117 0 chr6 18347020 18347165 -164068077 + FAM SINE Alu 5 166 -9 2378 82 0 0 chr6 18347268 18347560 -164067682 + AluSg SINE Alu 3 294 -16 642 265 56 67 chr6 18348047 18348433 -164066809 + L1MC4a LINE L1 5537 5796 -325 3440 172 103 28 chr6 18348459 18348505 -164066737 - L1MB8 LINE L1 -1 6177 6136 1271 191 164 37 chr6 18348505 18348829 -164066413 - MLT1A1 LTR MaLR 0 365 1 3440 172 103 28 chr6 18348829 18349274 -164065968 - L1MB8 LINE L1 -42 6136 5607 2520 73 0 0 chr6 18349274 18349577 -164065665 + AluY SINE Alu 1 303 -8 3440 172 103 28 chr6 18349577 18349839 -164065403 - L1MB8 LINE L1 -571 5607 5366 309 210 63 112 chr6 18349885 18349952 -164065290 + L1ME4a LINE L1 5984 6053 -68 1756 206 7 51 chr6 18349952 18350365 -164064877 - MLT2C1 LTR ERVL -2 395 1 309 210 63 112 chr6 18350365 18350413 -164064829 + L1ME4a LINE L1 6053 6093 -28 922 135 0 0 chr6 18350413 18350546 -164064696 - FLAM_C SINE Alu 0 133 1 309 210 63 112 chr6 18350546 18350572 -164064670 + L1ME4a LINE L1 6093 6119 -2 322 179 0 0 chr6 18350710 18350766 -164064476 - MLT1E2 LTR MaLR 0 626 571 3946 114 0 20 chr6 18350766 18351039 -164064203 - MER1A DNA MER1_type -2173 527 269 2439 82 0 3 chr6 18351039 18351344 -164063898 - AluSq SINE Alu -9 304 1 3946 114 0 20 chr6 18351344 18351606 -164063636 - MER1A DNA MER1_type -2431 269 3 204 40 0 0 chr6 18352151 18352176 -164063066 + (A)n Simple_repeat Simple_repeat 1 25 0 2253 114 0 0 chr6 18353226 18353515 -164061727 - AluSx SINE Alu -20 292 4 2509 194 52 40 chr6 18353574 18353843 -164061399 - L1MD3 LINE L1 0 8042 7778 2319 102 0 0 chr6 18353843 18354147 -164061095 - AluSq SINE Alu -9 304 1 2509 194 52 40 chr6 18354147 18354446 -164060796 - L1MD3 LINE L1 -264 7778 7480 2118 107 7 17 chr6 18354446 18354745 -164060497 - AluSx SINE Alu -4 308 13 2509 194 52 40 chr6 18354745 18354828 -164060414 - L1MD3 LINE L1 -562 7480 7400 226 273 104 22 chr6 18354835 18355018 -164060224 - L1MB8 LINE L1 -949 5197 5000 * 492 216 72 12 chr6 18355006 18355238 -164060004 + L1ME4a LINE L1 5820 6119 -2 601 291 64 13 chr6 18355534 18355768 -164059474 + MIR SINE MIR 17 262 0 195 100 0 0 chr6 18356106 18356136 -164059106 + (TG)n Simple_repeat Simple_repeat 2 31 0 2137 124 13 0 chr6 18356202 18356501 -164058741 + AluSq SINE Alu 3 305 -8 2124 116 82 25 chr6 18357705 18358058 -164057184 + THE1C LTR MaLR 3 375 0 238 333 13 0 chr6 18358176 18358254 -164056988 - L2 LINE L2 -1 3312 3234 815 86 103 0 chr6 18358282 18358399 -164056843 + L1MA6 LINE L1 6171 6299 -1 2144 138 0 0 chr6 18358642 18358939 -164056303 - AluSg SINE Alu -13 297 1 303 233 0 35 chr6 18359091 18359177 -164056065 + A-rich Low_complexity Low_complexity 2 84 0 564 230 79 0 chr6 18360242 18360407 -164054835 + MER5B DNA MER1_type 1 178 0 26 50 0 0 chr6 18360766 18360806 -164054436 + AT_rich Low_complexity Low_complexity 1 40 0 1889 151 6 19 chr6 18361494 18361805 -164053437 + AluJb SINE Alu 1 307 -5 735 227 0 0 chr6 18361814 18361946 -164053296 + FLAM_C SINE Alu 2 133 0 333 0 0 0 chr6 18362813 18362850 -164052392 + (TA)n Simple_repeat Simple_repeat 2 38 0 953 120 8 15 chr6 18362861 18362994 -164052248 - FLAM_C SINE Alu 0 133 2 262 276 61 10 chr6 18363620 18363718 -164051524 - MIR3 SINE MIR -7 201 99 285 292 25 75 chr6 18363971 18364047 -164051195 - MIR SINE MIR -108 154 89 2401 86 0 0 chr6 18364047 18364351 -164050891 + AluSx SINE Alu 2 305 -7 285 292 25 75 chr6 18364351 18364435 -164050807 - MIR SINE MIR -173 89 2 278 303 56 41 chr6 18364628 18364823 -164050419 + L1ME4a LINE L1 5835 6032 -89 21 82 0 0 chr6 18364866 18364915 -164050327 + AT_rich Low_complexity Low_complexity 1 49 0 1942 129 4 4 chr6 18365475 18365789 -164049453 - AluJb SINE Alu 0 316 3 1508 184 3 70 chr6 18366138 18366341 -164048901 - AluJo SINE Alu -7 305 131 2603 47 0 0 chr6 18366341 18366642 -164048600 + AluY SINE Alu 1 301 -10 1508 184 3 70 chr6 18366642 18366765 -164048477 - AluJo SINE Alu -181 131 1 216 255 0 0 chr6 18367184 18367235 -164048007 + L2 LINE L2 3149 3199 -73 1583 153 33 4 chr6 18368451 18368693 -164046549 - AluJb SINE Alu -15 297 49 918 66 33 0 chr6 18368695 18368817 -164046425 + Charlie3 DNA MER1_type 375 500 -2210 * 3600 77 4 11 chr6 18368811 18369279 -164045963 + Charlie3 DNA MER1_type 2242 2706 -4 236 261 210 17 chr6 18369405 18369524 -164045718 + MIR SINE MIR 66 207 -55 14734 178 18 23 chr6 18369535 18373681 -164041561 + L1PA16 LINE L1 912 5021 -1848 2433 84 0 0 chr6 18373681 18373980 -164041262 + AluY SINE Alu 1 299 -12 14734 178 18 23 chr6 18373980 18375819 -164039423 + L1PA16 LINE L1 5021 6867 -2 2332 91 7 0 chr6 18376269 18376566 -164038676 + AluY SINE Alu 1 299 -12 192 254 32 0 chr6 18376947 18377010 -164038232 - MIR SINE MIR -123 139 75 22 0 0 0 chr6 18377517 18377539 -164037703 + AT_rich Low_complexity Low_complexity 1 22 0 2371 78 3 0 chr6 18378027 18378323 -164036919 + AluY SINE Alu 1 297 -14 5797 126 29 3 chr6 18378389 18379574 -164035668 - L1PB1 LINE L1 0 6151 4938 11263 102 60 6 chr6 18379615 18379660 -164035582 - L1PBa LINE L1 -3738 3124 3083 2103 107 0 4 chr6 18379660 18379991 -164035251 - AluSg SINE Alu 0 330 1 11263 102 60 6 chr6 18379991 18382768 -164032474 - L1PBa LINE L1 -3779 3083 4 250 256 73 0 chr6 18382845 18382927 -164032315 - L1ME LINE L1 -223 5898 5811 6382 96 0 14 chr6 18383835 18385082 -164030160 - L1PA13 LINE L1 0 6163 4924 795 154 51 69 chr6 18385084 18385225 -164030017 + MER5A DNA MER1_type 8 147 -42 1841 169 0 3 chr6 18385225 18385520 -164029722 - AluJb SINE Alu -18 294 1 795 154 51 69 chr6 18385520 18385553 -164029689 + MER5A DNA MER1_type 147 179 -10 2221 85 0 7 chr6 18385778 18386072 -164029170 + AluSc SINE Alu 1 292 -17 21 71 0 0 chr6 18386279 18386321 -164028921 + AT_rich Low_complexity Low_complexity 1 42 0 3479 208 62 29 chr6 18386357 18387174 -164028068 - MER21B LTR ERV1 -1 862 19 414 188 10 89 chr6 18387171 18387272 -164027970 - MER21B LTR ERV1 -756 107 15 * 33 18 0 36 chr6 18387363 18387402 -164027840 + AT_rich Low_complexity Low_complexity 1 39 -14 2484 68 0 0 chr6 18387402 18387697 -164027545 - AluY SINE Alu -16 295 1 33 18 0 36 chr6 18387697 18387712 -164027530 + AT_rich Low_complexity Low_complexity 39 53 0 2111 134 0 0 chr6 18387727 18388026 -164027216 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr6 18388370 18388392 -164026850 + AT_rich Low_complexity Low_complexity 1 22 0 215 30 0 30 chr6 18388701 18388734 -164026508 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 283 249 84 89 chr6 18389629 18389987 -164025255 - HAL1 LINE L1 -868 1639 1284 262 284 52 26 chr6 18390842 18390958 -164024284 - L1M4 LINE L1 -2228 3918 3800 378 329 147 35 chr6 18390970 18391521 -164023721 - MLT1L LTR MaLR -2 613 1 234 0 0 0 chr6 18391549 18391575 -164023667 + (TG)n Simple_repeat Simple_repeat 2 27 0 922 116 0 0 chr6 18391575 18391696 -164023546 - AluSp SINE Alu -191 122 2 2400 86 0 0 chr6 18391696 18391997 -164023245 - AluSq SINE Alu -7 306 6 922 136 30 12 chr6 18392370 18392539 -164022703 - L1MD1 LINE L1 -44 6198 6027 514 153 59 34 chr6 18392554 18392672 -164022570 - L1MB4 LINE L1 -2 6178 6058 680 231 0 0 chr6 18393203 18393350 -164021892 + L2 LINE L2 614 760 -2554 199 274 27 41 chr6 18393363 18393436 -164021806 + L2 LINE L2 1196 1267 -2047 3298 261 84 51 chr6 18393480 18394235 -164021007 + L2 LINE L2 1560 2289 -1024 270 0 0 0 chr6 18394235 18394265 -164020977 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 145 20 0 chr6 18394265 18394617 -164020625 - L1PB3 LINE L1 -1 6153 5795 3298 261 84 51 chr6 18394617 18395295 -164019947 + L2 LINE L2 2289 2943 -370 2406 90 0 3 chr6 18395295 18395606 -164019636 - AluSg SINE Alu 0 310 1 1809 161 0 3 chr6 18395607 18395893 -164019349 - AluJo SINE Alu -17 295 11 3298 261 84 51 chr6 18395893 18396140 -164019102 + L2 LINE L2 2942 3313 0 1838 158 79 20 chr6 18396733 18397087 -164018155 + THE1C LTR MaLR 1 375 0 517 331 56 60 chr6 18397441 18397873 -164017369 - L2 LINE L2 -7 3265 2836 868 238 16 0 chr6 18397991 18398176 -164017066 + MER5A DNA MER1_type 1 188 -1 190 314 29 29 chr6 18398366 18398436 -164016806 - MER5A DNA MER1_type -5 184 115 454 323 79 18 chr6 18398676 18398840 -164016402 + MER5B DNA MER1_type 3 176 -2 2069 112 32 0 chr6 18399217 18399502 -164015740 + AluSx SINE Alu 1 294 -18 421 222 6 29 chr6 18399502 18399673 -164015569 + GA-rich Low_complexity Low_complexity 1 167 0 642 132 26 26 chr6 18399884 18399998 -164015244 + AluSg/x SINE Alu 195 308 -1 1160 156 47 19 chr6 18400008 18400219 -164015023 + MSTB LTR MaLR 210 426 0 818 146 8 23 chr6 18400437 18400567 -164014675 - FLAM_C SINE Alu -14 129 2 2018 155 0 16 chr6 18401043 18401360 -164013882 + AluSx SINE Alu 1 312 0 1548 134 0 13 chr6 18451378 18451609 -163963633 + AluJb SINE Alu 59 286 -26 345 100 0 0 chr6 18451615 18451665 -163963577 + (TA)n Simple_repeat Simple_repeat 1 50 0 491 323 25 10 chr6 18451667 18451865 -163963377 - L1ME LINE L1 -346 5775 5575 771 219 88 0 chr6 18452324 18452484 -163962758 + MER5B DNA MER1_type 3 176 -2 181 264 69 35 chr6 18452509 18452596 -163962646 - L2 LINE L2 -46 3226 3137 269 255 0 10 chr6 18452647 18452749 -163962493 + (TA)n Simple_repeat Simple_repeat 1 101 0 378 0 0 0 chr6 18453048 18453090 -163962152 + (TA)n Simple_repeat Simple_repeat 2 43 0 1829 142 7 29 chr6 18453526 18453835 -163961407 + AluJo SINE Alu 1 302 -10 349 303 103 23 chr6 18455233 18455408 -163959834 - MIR SINE MIR -40 222 34 970 165 23 65 chr6 18455691 18455763 -163959479 - MSTB LTR MaLR 0 426 353 2332 110 3 0 chr6 18455763 18456073 -163959169 + AluSx SINE Alu 1 311 -1 970 165 23 65 chr6 18456073 18456351 -163958891 - MSTB LTR MaLR -73 353 1 1902 159 36 3 chr6 18456686 18456988 -163958254 + AluSx SINE Alu 1 312 0 223 250 0 33 chr6 18458117 18458177 -163957065 + G-rich Low_complexity Low_complexity 1 58 0 1233 234 81 31 chr6 18458398 18458783 -163956459 + MLT1C LTR MaLR 6 409 -58 2340 107 0 0 chr6 18458783 18459093 -163956149 - AluSg SINE Alu 0 310 1 2371 97 6 0 chr6 18459124 18459435 -163955807 + AluSp SINE Alu 1 313 0 1335 139 0 0 chr6 18459440 18459627 -163955615 + AluSc SINE Alu 7 193 -116 263 305 128 21 chr6 18459972 18460113 -163955129 - MIR3 SINE MIR -9 199 44 1100 188 0 5 chr6 18460114 18460306 -163954936 + AluSg/x SINE Alu 113 303 -7 344 277 0 0 chr6 18460307 18460390 -163954852 - MIR SINE MIR -1 261 179 1883 145 21 0 chr6 18461302 18461584 -163953658 - AluSx SINE Alu -24 288 1 681 240 136 50 chr6 18462027 18462285 -163952957 + MLT1J LTR MaLR 223 502 -9 317 276 51 39 chr6 18462315 18462471 -163952771 - MLT1L LTR MaLR 0 615 458 243 212 152 0 chr6 18462497 18462563 -163952679 - MLT1L LTR MaLR -222 393 318 1499 217 26 37 chr6 18463759 18464137 -163951105 + MLT1A2 LTR MaLR 1 374 0 2329 167 59 133 chr6 18464312 18465097 -163950145 - LTR8A LTR ERV1 0 727 1 2880 190 36 122 chr6 18465183 18465568 -163949674 - L1MC5 LINE L1 -214 7747 7330 2391 100 0 0 chr6 18465568 18465877 -163949365 - AluSq SINE Alu -4 309 1 2880 190 36 122 chr6 18465877 18466174 -163949068 - L1MC5 LINE L1 -631 7330 7009 1600 187 76 15 chr6 18466174 18466516 -163948726 - MLT1A1 LTR MaLR 0 365 3 2880 190 36 122 chr6 18466516 18466755 -163948487 - L1MC5 LINE L1 -952 7009 6751 2569 75 0 0 chr6 18466755 18467063 -163948179 - AluSx SINE Alu -4 308 1 2880 190 36 122 chr6 18467063 18467511 -163947731 - L1MC5 LINE L1 -1210 6751 6476 2656 162 49 126 chr6 18467549 18468301 -163946941 + LTR8A LTR ERV1 34 727 0 1909 162 0 16 chr6 18468895 18469209 -163946033 + AluJb SINE Alu 1 309 -3 4653 113 45 49 chr6 18469235 18469432 -163945810 - MER4E LTR ERV1 0 779 583 2319 113 0 6 chr6 18469432 18469743 -163945499 + AluSq SINE Alu 1 309 -4 4653 113 45 49 chr6 18469743 18470327 -163944915 - MER4E LTR ERV1 -196 583 1 3020 157 48 66 chr6 18470373 18470977 -163944265 + LTR59 LTR ERV1 1 593 -4 2587 282 68 39 chr6 18470984 18472474 -163942768 - L1M4 LINE L1 -745 5401 3857 2133 77 4 0 chr6 18472474 18472735 -163942507 + AluSg SINE Alu 35 296 -14 2587 282 68 39 chr6 18472735 18472883 -163942359 - L1M4 LINE L1 -2289 3857 3715 2913 273 146 46 chr6 18472883 18473198 -163942044 - L2 LINE L2 -2 3311 3029 2396 67 3 3 chr6 18473198 18473495 -163941747 + AluY SINE Alu 1 297 -14 2913 273 146 46 chr6 18473495 18474215 -163941027 - L2 LINE L2 -284 3029 2383 2380 104 0 0 chr6 18474215 18474522 -163940720 + AluY SINE Alu 1 307 -4 2913 273 146 46 chr6 18474522 18475066 -163940176 - L2 LINE L2 -930 2383 1895 1769 176 3 3 chr6 18475066 18475361 -163939881 - AluJb SINE Alu -17 295 1 2913 273 146 46 chr6 18475361 18475535 -163939707 - L2 LINE L2 -1418 1895 1370 571 290 73 47 chr6 18475638 18476404 -163938838 - L1MEd LINE L1 -2958 3171 2386 242 263 0 0 chr6 18476375 18476474 -163938768 - L1MEd LINE L1 -3963 2166 2068 * 549 286 42 67 chr6 18476638 18476994 -163938248 - L1MEd LINE L1 -4433 1696 1350 355 225 11 34 chr6 18477155 18477244 -163937998 + MLT1H1 LTR MaLR 463 549 -6 231 250 0 17 chr6 18477311 18477371 -163937871 + MLT1H1-int LTR MaLR 33 91 -1644 2023 167 22 6 chr6 18477506 18477865 -163937377 - MLT1A1 LTR MaLR 0 365 1 3914 196 84 9 chr6 18478631 18479416 -163935826 + MER21B LTR ERV1 1 844 -19 1824 158 14 14 chr6 18479418 18479579 -163935663 - AluJo SINE Alu -14 298 135 2149 107 0 47 chr6 18479579 18479897 -163935345 - AluSg SINE Alu -7 303 1 1824 158 14 14 chr6 18479897 18480032 -163935210 - AluJo SINE Alu -176 136 2 2313 110 0 19 chr6 18480130 18480448 -163934794 + AluSx SINE Alu 1 312 0 2276 119 0 0 chr6 18480559 18480862 -163934380 - AluSx SINE Alu -9 303 1 392 253 99 78 chr6 18480862 18481146 -163934096 + MLT1H1-int LTR MaLR 1078 1370 -1 372 191 0 0 chr6 18481164 18481227 -163934015 + Tigger2 DNA MER2_type 1 63 -2655 2488 81 0 3 chr6 18481251 18481560 -163933682 - AluSq SINE Alu -5 308 1 2675 122 43 32 chr6 18481570 18482011 -163933231 + Tigger2 DNA MER2_type 2273 2718 0 278 279 0 0 chr6 18482018 18482079 -163933163 + MLT1F LTR MaLR 23 83 -459 2146 117 10 0 chr6 18482188 18482486 -163932756 - AluSx SINE Alu -11 301 1 342 194 39 48 chr6 18482661 18482764 -163932478 + MLT1H1 LTR MaLR 454 555 0 652 286 37 38 chr6 18482778 18483146 -163932096 - L1MEd LINE L1 -4892 1227 976 2184 104 0 22 chr6 18483146 18483463 -163931779 - AluSx SINE Alu -2 310 1 652 286 37 38 chr6 18483463 18483544 -163931698 - L1MEd LINE L1 -5143 976 896 1440 179 51 34 chr6 18483736 18484087 -163931155 - L1MB4 LINE L1 0 6180 5824 411 354 29 10 chr6 18484078 18484287 -163930955 - L1MEd LINE L1 -5455 664 452 * 1627 157 34 62 chr6 18484332 18484656 -163930586 - MLT1B LTR MaLR 0 390 76 1873 79 24 12 chr6 18484900 18485152 -163930090 - AluSx SINE Alu 0 312 58 812 207 62 76 chr6 18485152 18485442 -163929800 + pTR5 LTR ERV1 743 1028 -1410 3300 191 174 1 chr6 18485629 18486332 -163928910 + LTR12 LTR ERV1 3 826 0 642 142 117 8 chr6 18486332 18486452 -163928790 + LTR12 LTR ERV1 582 714 0 390 197 3 9 chr6 18486453 18486533 -163928709 - AluS SINE Alu -243 60 1 750 107 116 8 chr6 18486825 18486946 -163928296 - AluJo SINE Alu -176 136 3 2247 97 14 0 chr6 18488113 18488403 -163926839 - AluSp SINE Alu -19 294 1 2495 69 0 7 chr6 18488413 18488718 -163926524 - AluY SINE Alu -8 303 1 2373 77 0 3 chr6 18488907 18489207 -163926035 - AluY SINE Alu -12 299 1 262 179 64 51 chr6 18489812 18489890 -163925352 + MIR3 SINE MIR 129 207 -1 4461 128 40 75 chr6 18490225 18491076 -163924166 - LTR12 LTR ERV1 -1 825 5 437 161 31 31 chr6 18491100 18491261 -163923981 + G-rich Low_complexity Low_complexity 2 162 0 1359 167 184 40 chr6 18491263 18491665 -163923577 - pTR5 LTR ERV1 -1237 1201 742 1586 287 59 30 chr6 18491874 18492379 -163922863 + MLT1G1 LTR MaLR 76 595 0 714 201 0 8 chr6 18492424 18492558 -163922684 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr6 18492573 18492597 -163922645 + AT_rich Low_complexity Low_complexity 1 24 0 303 380 38 11 chr6 18492648 18492832 -163922410 + MER5A DNA MER1_type 1 189 0 1001 154 0 0 chr6 18492833 18492982 -163922260 - AluSc SINE Alu -88 221 73 216 0 0 0 chr6 18492982 18493006 -163922236 + (A)n Simple_repeat Simple_repeat 1 24 0 736 223 60 0 chr6 18493025 18493191 -163922051 - MER5B DNA MER1_type -2 176 1 2140 112 0 16 chr6 18493657 18493970 -163921272 + AluY SINE Alu 1 308 -3 1745 188 0 13 chr6 18494062 18494376 -163920866 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 18494891 18494920 -163920322 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 54 75 chr6 18495250 18495638 -163919604 + MLT1J2 LTR MaLR 67 446 -4 2488 66 16 0 chr6 18496165 18496468 -163918774 + AluY SINE Alu 1 308 -3 2017 87 42 52 chr6 18496620 18496932 -163918310 - AluSx SINE Alu 0 309 1 2346 81 0 36 chr6 18498027 18498336 -163916906 + AluY SINE Alu 1 298 -13 398 273 128 6 chr6 18498573 18498745 -163916497 + MIR SINE MIR 49 241 -21 500 268 49 5 chr6 18499078 18499238 -163916004 - MIR SINE MIR -62 146 9 1179 161 0 70 chr6 18499375 18499605 -163915637 + MER20B DNA MER1_type 1 214 -5 2436 71 3 3 chr6 18499810 18500105 -163915137 + AluY SINE Alu 1 295 -16 27 0 0 0 chr6 18500280 18500307 -163914935 + AT_rich Low_complexity Low_complexity 1 27 0 6103 107 4 0 chr6 18500307 18501340 -163913902 - L1PA16 LINE L1 -9 6157 5142 1725 98 128 22 chr6 18501471 18501745 -163913497 + AluY SINE Alu 1 303 -8 505 139 0 47 chr6 18501757 18501843 -163913399 + L1MD2 LINE L1 6257 6338 -21 190 105 18 70 chr6 18501848 18501905 -163913337 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2330 108 0 0 chr6 18501907 18502213 -163913029 - AluSx SINE Alu -6 306 1 262 212 145 50 chr6 18502448 18502627 -163912615 - ORSL DNA AcHobo 0 275 80 32 0 0 0 chr6 18502700 18502732 -163912510 + AT_rich Low_complexity Low_complexity 1 32 0 234 299 123 75 chr6 18503713 18504021 -163911221 + LTR16C LTR ERVL 168 490 -1 4048 146 6 2 chr6 18504937 18505569 -163909673 - MER41B LTR ERV1 0 635 1 521 300 67 10 chr6 18505914 18506420 -163908822 + L1M3 LINE L1 4839 5457 -711 354 193 243 7 chr6 18506442 18506582 -163908660 - MER5A DNA MER1_type -6 183 11 751 194 74 25 chr6 18506587 18506829 -163908413 + L1ME LINE L1 5526 5779 -342 2777 91 18 61 chr6 18506833 18506924 -163908318 + LTR56 LTR ERV1 1 94 -373 1925 130 82 23 chr6 18506924 18507278 -163907964 + THE1C LTR MaLR 1 375 0 2777 91 18 61 chr6 18507278 18507396 -163907846 + LTR56 LTR ERV1 94 216 -251 1541 83 69 5 chr6 18507396 18507612 -163907630 + MER30 DNA MER1_type 1 230 0 2777 91 18 61 chr6 18507612 18507747 -163907495 + LTR56 LTR ERV1 216 321 -146 2333 98 0 0 chr6 18507747 18508043 -163907199 + AluSq SINE Alu 1 296 -17 2777 91 18 61 chr6 18508043 18508184 -163907058 + LTR56 LTR ERV1 321 467 0 300 27 0 0 chr6 18508305 18508342 -163906900 + (TG)n Simple_repeat Simple_repeat 2 38 0 324 0 0 0 chr6 18508491 18508527 -163906715 + (CA)n Simple_repeat Simple_repeat 1 36 0 225 224 41 0 chr6 18508792 18508841 -163906401 + MLT1J LTR MaLR 435 485 -26 2675 144 6 45 chr6 18508870 18509120 -163906122 - LTR26B LTR ERV1 0 531 308 2214 112 56 34 chr6 18509120 18509476 -163905766 - THE1B LTR MaLR 0 364 1 2675 144 6 45 chr6 18509476 18509711 -163905531 - LTR26B LTR ERV1 -223 308 65 867 108 0 0 chr6 18509711 18509822 -163905420 - 7SLRNA srpRNA srpRNA -7 313 203 557 91 0 0 chr6 18509823 18509900 -163905342 - LTR26B LTR ERV1 -453 78 2 242 257 218 10 chr6 18509983 18510084 -163905158 + Charlie8 DNA MER1_type 103 224 -2193 642 281 156 85 chr6 18510742 18511319 -163903923 + L3 LINE CR1 908 1525 -52 419 296 10 77 chr6 18512368 18512467 -163902775 + MIR SINE MIR 79 161 -101 2147 116 3 0 chr6 18512467 18512806 -163902436 - AluSp SINE Alu 0 340 1 419 296 10 77 chr6 18512806 18512901 -163902341 + MIR SINE MIR 161 261 -1 3366 212 93 8 chr6 18512948 18513032 -163902210 - MER69B DNA AcHobo -1300 1226 1151 1582 190 16 19 chr6 18513032 18513343 -163901899 + AluJo SINE Alu 1 310 -2 3366 212 93 8 chr6 18513343 18514349 -163900893 - MER69B DNA AcHobo -1375 1151 10 2081 105 3 48 chr6 18514572 18514886 -163900356 + AluJb SINE Alu 1 300 -12 2323 107 3 0 chr6 18515367 18515676 -163899566 + AluSg SINE Alu 1 310 0 962 113 0 0 chr6 18515691 18515833 -163899409 + L1PA10 LINE L1 6026 6167 -1 573 266 55 126 chr6 18516168 18516372 -163898870 - L2 LINE L2 0 3313 3096 1961 115 24 10 chr6 18516372 18516660 -163898582 + AluSx SINE Alu 1 292 -20 573 266 55 126 chr6 18516660 18517122 -163898120 - L2 LINE L2 -217 3096 2710 2556 62 0 3 chr6 18517126 18517435 -163897807 - AluY SINE Alu -3 308 1 2157 79 11 4 chr6 18517435 18517715 -163897527 - AluSc SINE Alu -12 297 16 1223 174 0 10 chr6 18517715 18517896 -163897346 + AluJb SINE Alu 107 287 -25 477 0 0 0 chr6 18517896 18517949 -163897293 + (CA)n Simple_repeat Simple_repeat 2 54 0 1223 174 0 10 chr6 18517949 18517974 -163897268 + AluJb SINE Alu 287 311 -1 386 252 65 43 chr6 18518042 18518181 -163897061 - L2 LINE L2 -614 2700 2559 641 223 108 39 chr6 18518265 18518525 -163896717 + MLT1H LTR MaLR 144 421 -128 1719 161 52 17 chr6 18518740 18519031 -163896211 - AluJo SINE Alu -7 305 5 496 81 11 0 chr6 18519671 18519758 -163895484 + L1PB2 LINE L1 6063 6150 -1 545 338 47 22 chr6 18519784 18520131 -163895111 - LTR16A LTR ERVL -97 353 1 2328 92 3 0 chr6 18521102 18521397 -163893845 + AluSp SINE Alu 1 296 -17 2408 107 0 0 chr6 18522732 18523041 -163892201 + AluSc SINE Alu 1 309 0 357 294 68 14 chr6 18523373 18523519 -163891723 - MIR3 SINE MIR -25 183 30 1550 183 47 10 chr6 18523694 18523994 -163891248 + AluJo SINE Alu 1 311 -1 2159 100 35 3 chr6 18524549 18524838 -163890404 - AluSq SINE Alu -15 298 1 1667 154 0 19 chr6 18524851 18525118 -163890124 - AluSx SINE Alu -4 308 47 665 124 150 0 chr6 18525118 18525231 -163890011 - FRAM SINE Alu -48 128 1 494 282 90 65 chr6 18525603 18525880 -163889362 + MLT1H LTR MaLR 23 306 -243 520 268 67 40 chr6 18525933 18526479 -163888763 - L1MEd LINE L1 -4781 1603 1022 1764 256 84 40 chr6 18527214 18527636 -163887606 + L1MEc LINE L1 1535 1937 -4278 203 59 0 29 chr6 18527636 18527670 -163887572 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1955 98 76 0 chr6 18527672 18527936 -163887306 - AluSq SINE Alu -29 284 1 1764 256 84 40 chr6 18527936 18528065 -163887177 + L1MEc LINE L1 1937 2059 -4156 201 39 0 0 chr6 18528065 18528091 -163887151 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1764 256 84 40 chr6 18528091 18528927 -163886315 + L1MEc LINE L1 2059 2949 -3266 10346 141 23 19 chr6 18528946 18529829 -163885413 + L1PA13 LINE L1 3510 4388 -1775 351 0 0 0 chr6 18529829 18529868 -163885374 + (CA)n Simple_repeat Simple_repeat 1 39 0 10346 141 23 19 chr6 18529868 18530793 -163884449 + L1PA13 LINE L1 4388 5343 -820 2060 141 7 0 chr6 18530793 18531084 -163884158 + AluSx SINE Alu 1 293 -19 10346 141 23 19 chr6 18531084 18531909 -163883333 + L1PA13 LINE L1 5343 6163 0 445 203 0 24 chr6 18531910 18532033 -163883209 + L1MEc LINE L1 3884 4003 -2212 * 3981 193 36 67 chr6 18532029 18532223 -163883019 - L1MC/D LINE L1 -743 5403 5205 1973 140 24 0 chr6 18532223 18532516 -163882726 - AluJb SINE Alu -12 300 1 3981 193 36 67 chr6 18532516 18532877 -163882365 - L1MC/D LINE L1 -941 5205 4834 1934 174 0 3 chr6 18532877 18533175 -163882067 - AluJb SINE Alu -15 297 1 3981 193 36 67 chr6 18533175 18533307 -163881935 - L1MC/D LINE L1 -1312 4834 4699 2118 133 0 3 chr6 18533307 18533609 -163881633 - AluSg SINE Alu -9 301 1 3981 193 36 67 chr6 18533609 18534326 -163880916 - L1MC/D LINE L1 -1447 4699 4114 24 32 0 0 chr6 18534341 18534372 -163880870 + AT_rich Low_complexity Low_complexity 1 31 0 569 134 50 17 chr6 18534395 18534514 -163880728 + AluSg/x SINE Alu 181 303 -6 2941 132 0 9 chr6 18535328 18535782 -163879460 - L1PA16 LINE L1 0 6166 5717 1369 258 133 31 chr6 18536179 18536674 -163878568 + L2 LINE L2 2431 3032 -281 222 37 0 0 chr6 18536674 18536701 -163878541 + (TG)n Simple_repeat Simple_repeat 2 28 0 1369 258 133 31 chr6 18536701 18536955 -163878287 + L2 LINE L2 3032 3259 -54 607 157 112 51 chr6 18536959 18537137 -163878105 - MER53 DNA DNA 0 189 1 4410 168 24 12 chr6 18537222 18538218 -163877024 + L1PB4 LINE L1 4402 5433 -723 1850 164 3 14 chr6 18538218 18538510 -163876732 + AluJo SINE Alu 6 294 -18 4410 168 24 12 chr6 18538510 18539243 -163875999 + L1PB4 LINE L1 5433 6156 0 500 272 43 0 chr6 18539812 18539974 -163875268 + MARNA DNA Mariner 15 183 -403 302 240 13 0 chr6 18540003 18540078 -163875164 - MIR SINE MIR -179 83 8 1064 182 5 15 chr6 18540090 18540293 -163874949 + MLT1A1 LTR MaLR 165 365 0 1158 232 28 55 chr6 18540296 18540658 -163874584 - L1M4 LINE L1 -6038 504 153 2103 154 0 0 chr6 18540678 18540983 -163874259 - AluJb SINE Alu -7 305 1 815 182 0 0 chr6 18540984 18541132 -163874110 - L1M4 LINE L1 -6379 163 16 840 149 316 11 chr6 18541257 18541349 -163873893 - AluSg1 SINE Alu -28 281 218 1895 137 38 3 chr6 18541349 18541642 -163873600 - AluSg SINE Alu -7 303 1 840 149 316 11 chr6 18541642 18541723 -163873519 - AluSg1 SINE Alu -91 218 55 823 162 30 24 chr6 18542434 18542601 -163872641 - L1M4 LINE L1 -6359 183 16 362 253 0 40 chr6 18542650 18542749 -163872493 - L1MC4 LINE L1 -1339 6703 6609 2068 125 0 4 chr6 18544728 18545067 -163870175 - AluSg SINE Alu 0 338 1 368 251 131 76 chr6 18545152 18545602 -163869640 + L1ME1 LINE L1 1298 1722 -4999 261 0 0 0 chr6 18545602 18545631 -163869611 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 251 131 76 chr6 18545631 18546151 -163869091 + L1ME1 LINE L1 1722 2423 -4298 2439 81 0 0 chr6 18546151 18546447 -163868795 - AluSx SINE Alu -16 296 1 368 251 131 76 chr6 18546447 18546642 -163868600 + L1ME1 LINE L1 2423 2606 -4115 1530 260 74 27 chr6 18546706 18546995 -163868247 + L1ME1 LINE L1 2556 2830 -3710 1651 211 7 3 chr6 18546995 18547299 -163867943 + AluJb SINE Alu 1 305 -7 1530 260 74 27 chr6 18547299 18547790 -163867452 + L1ME1 LINE L1 2830 3373 -3167 1852 223 31 41 chr6 18547792 18548347 -163866895 + L1ME1 LINE L1 5968 6516 -44 2374 46 39 0 chr6 18548498 18548781 -163866461 + AluY SINE Alu 1 294 -17 550 339 32 0 chr6 18548794 18549045 -163866197 + L1MEc LINE L1 850 1108 -6030 796 247 60 39 chr6 18549599 18549752 -163865490 + L1MEc LINE L1 1377 1525 -5422 1929 130 6 22 chr6 18549752 18550068 -163865174 - AluSx SINE Alu -1 311 1 796 247 60 39 chr6 18550068 18550433 -163864809 + L1MEc LINE L1 1525 1966 -4981 1653 327 82 37 chr6 18550437 18551422 -163863820 + ERVL LTR ERVL 2719 3658 -1996 2723 29 0 0 chr6 18551422 18551729 -163863513 + AluYa5 SINE Alu 1 307 -4 1653 327 82 37 chr6 18551729 18552092 -163863150 + ERVL LTR ERVL 3658 4136 -1518 1890 145 134 31 chr6 18552092 18552479 -163862763 - MSTA LTR MaLR -1 427 1 1653 327 82 37 chr6 18552479 18552539 -163862703 + ERVL LTR ERVL 4136 4192 -1462 332 206 93 21 chr6 18552907 18553004 -163862238 + MSTA LTR MaLR 123 226 -202 2313 227 111 29 chr6 18553111 18553839 -163861403 - MER21B LTR ERV1 -62 801 14 514 345 42 41 chr6 18553878 18554340 -163860902 + ERVL LTR ERVL 4781 5246 -518 2070 140 7 94 chr6 18554340 18554775 -163860467 + MLT2C1 LTR ERVL 1 397 0 514 345 42 41 chr6 18554775 18554854 -163860388 + ERVL LTR ERVL 5246 5323 -441 1117 254 64 15 chr6 18555015 18555345 -163859897 + LTR16A LTR ERVL 1 346 -104 951 204 65 18 chr6 18555390 18555496 -163859746 + L1ME3 LINE L1 5871 5971 -191 396 0 0 0 chr6 18555496 18555540 -163859702 + (TG)n Simple_repeat Simple_repeat 2 45 0 951 204 65 18 chr6 18555540 18555712 -163859530 + L1ME3 LINE L1 5971 6162 0 303 313 40 0 chr6 18555744 18555843 -163859399 + MIR3 SINE MIR 58 160 -48 36 23 0 0 chr6 18555990 18556033 -163859209 + AT_rich Low_complexity Low_complexity 1 43 0 372 284 59 54 chr6 18556415 18556585 -163858657 + MLT1K LTR MaLR 332 505 -83 2417 168 16 12 chr6 18556585 18557009 -163858233 - MSTB LTR MaLR 0 426 1 372 284 59 54 chr6 18557009 18557077 -163858165 + MLT1K LTR MaLR 505 571 -17 2232 94 40 0 chr6 18557080 18557379 -163857863 - AluY SINE Alu 0 311 1 368 277 31 8 chr6 18557402 18557532 -163857710 + L1ME4a LINE L1 5493 5625 -496 523 192 158 0 chr6 18557553 18557673 -163857569 - L2 LINE L2 0 3313 3175 4004 114 44 8 chr6 18557688 18558176 -163857066 + LTR9 LTR ERV1 3 517 -95 180 0 0 0 chr6 18558176 18558196 -163857046 + (TTCTC)n Simple_repeat Simple_repeat 2 21 0 4004 114 44 8 chr6 18558196 18558296 -163856946 + LTR9 LTR ERV1 517 612 0 5329 134 10 35 chr6 18558318 18559446 -163855796 + L1PA15 LINE L1 4231 5258 -908 2216 105 0 3 chr6 18559446 18559741 -163855501 + AluSx SINE Alu 5 298 -14 5329 134 10 35 chr6 18559741 18560626 -163854616 + L1PA15 LINE L1 5258 6163 -3 597 251 128 37 chr6 18560621 18560632 -163854610 + L1ME4a LINE L1 5677 5686 -435 * 2436 86 0 0 chr6 18560632 18560933 -163854309 + AluSq SINE Alu 1 301 -12 270 0 0 0 chr6 18560933 18560963 -163854279 + (TA)n Simple_repeat Simple_repeat 2 31 0 597 251 128 37 chr6 18560963 18561356 -163853886 + L1ME4a LINE L1 5685 6119 -2 25 0 0 0 chr6 18565585 18565610 -163849632 + GC_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr6 18565638 18565687 -163849555 + GC_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr6 18565789 18565816 -163849426 + GC_rich Low_complexity Low_complexity 1 27 0 249 175 16 32 chr6 18566119 18566182 -163849060 + C-rich Low_complexity Low_complexity 2 63 0 24 32 0 0 chr6 18567311 18567342 -163847900 + GC_rich Low_complexity Low_complexity 1 31 0 2377 88 3 0 chr6 18568127 18568423 -163846819 - AluSq SINE Alu -16 297 1 276 318 38 14 chr6 18568442 18568583 -163846659 - MIR3 SINE MIR -4 204 59 22 0 0 0 chr6 18570892 18570914 -163844328 + AT_rich Low_complexity Low_complexity 1 22 0 2433 68 3 26 chr6 18572227 18572538 -163842704 + AluY SINE Alu 1 304 -7 432 309 56 34 chr6 18572677 18572910 -163842332 - MIR SINE MIR -5 257 20 202 308 100 0 chr6 18573116 18573236 -163842006 - MIR SINE MIR -14 248 117 24 0 0 0 chr6 18575848 18575872 -163839370 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr6 18576601 18576630 -163838612 + (CTG)n Simple_repeat Simple_repeat 3 31 0 203 184 0 0 chr6 18576739 18576777 -163838465 + (CTG)n Simple_repeat Simple_repeat 3 40 0 22 0 0 0 chr6 18578556 18578578 -163836664 + AT_rich Low_complexity Low_complexity 1 22 0 2511 73 0 0 chr6 18578985 18579287 -163835955 - AluY SINE Alu -9 302 1 223 294 55 18 chr6 18579309 18579418 -163835824 + MIR SINE MIR 125 237 -25 2017 92 27 44 chr6 18579433 18579727 -163835515 + AluY SINE Alu 1 289 -22 322 188 0 0 chr6 18579729 18579793 -163835449 + L1MC4 LINE L1 6640 6703 -1339 2226 105 3 25 chr6 18579986 18580300 -163834942 - AluSx SINE Alu -1 311 5 1548 185 7 27 chr6 18580892 18581071 -163834171 - AluJb SINE Alu -1 311 139 2143 106 0 0 chr6 18581071 18581344 -163833898 - AluSg SINE Alu -37 273 1 1548 185 7 27 chr6 18581344 18581461 -163833781 - AluJb SINE Alu -173 139 21 1909 124 5 93 chr6 18583328 18583482 -163831760 - L1MA7 LINE L1 0 6291 6125 1860 146 9 35 chr6 18583482 18583798 -163831444 - AluJb SINE Alu -4 308 1 1909 124 5 93 chr6 18583798 18584021 -163831221 - L1MA7 LINE L1 -166 6125 5947 1701 151 63 6 chr6 18584103 18584234 -163831008 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18584234 18584256 -163830986 + (TG)n Simple_repeat Simple_repeat 1 22 0 1701 151 63 6 chr6 18584256 18584441 -163830801 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18584865 18585004 -163830238 - MIR SINE MIR -47 215 53 2156 186 26 26 chr6 18585014 18585083 -163830159 - MSTB LTR MaLR -2 424 356 2395 86 0 13 chr6 18585083 18585396 -163829846 + AluY SINE Alu 1 309 -2 2156 186 26 26 chr6 18585396 18585750 -163829492 - MSTB LTR MaLR -69 357 1 2520 55 3 7 chr6 18586168 18586476 -163828766 - AluY SINE Alu -4 307 1 956 128 0 0 chr6 18586734 18586867 -163828375 - FLAM_C SINE Alu 0 133 1 186 218 333 39 chr6 18587019 18587175 -163828067 - MIR SINE MIR -8 254 53 1484 113 154 30 chr6 18587751 18588017 -163827225 + AluSg1 SINE Alu 1 299 -10 1019 191 0 0 chr6 18588017 18588195 -163827047 + AluJb SINE Alu 134 311 -1 185 103 77 0 chr6 18588206 18588245 -163826997 + G-rich Low_complexity Low_complexity 5 46 0 377 209 23 8 chr6 18588246 18588375 -163826867 + GA-rich Low_complexity Low_complexity 5 135 0 3053 116 15 48 chr6 18588377 18588724 -163826518 + L1MA4 LINE L1 5796 6122 -178 2499 51 0 0 chr6 18588724 18589016 -163826226 + AluY SINE Alu 1 292 -19 3053 116 15 48 chr6 18589016 18589187 -163826055 + L1MA4 LINE L1 6122 6297 -3 1842 156 11 3 chr6 18589193 18589475 -163825767 + AluJb SINE Alu 3 286 -26 2219 103 0 3 chr6 18589506 18589797 -163825445 - AluSc SINE Alu -19 290 1 2634 54 0 10 chr6 18590792 18591106 -163824136 - AluY SINE Alu 0 311 1 2254 113 0 3 chr6 18591538 18591838 -163823404 - AluSq SINE Alu -13 300 2 2534 66 3 0 chr6 18592167 18592470 -163822772 + AluSp SINE Alu 1 304 -9 2408 74 0 43 chr6 18592897 18593222 -163822020 - AluY SINE Alu 0 311 1 286 234 0 2 chr6 18593582 18593647 -163821595 - MLT1H1 LTR MaLR 0 590 532 2255 122 0 6 chr6 18593647 18593959 -163821283 + AluSx SINE Alu 1 310 -2 2437 97 0 3 chr6 18593971 18594282 -163820960 - AluSq SINE Alu -1 312 3 1856 148 33 7 chr6 18594301 18594605 -163820637 - AluSx SINE Alu 0 312 1 683 301 59 34 chr6 18594608 18595017 -163820225 - MLT1H1 LTR MaLR -57 533 10 22 0 0 0 chr6 18595100 18595122 -163820120 + AT_rich Low_complexity Low_complexity 1 22 0 2365 106 0 0 chr6 18595247 18595559 -163819683 - AluSx SINE Alu 0 312 1 246 313 123 25 chr6 18595813 18595976 -163819266 + MIR3 SINE MIR 1 179 -29 534 236 211 5 chr6 18597135 18597334 -163817908 + MIR SINE MIR 9 248 -14 2246 114 3 0 chr6 18597341 18597640 -163817602 - AluSp SINE Alu -13 300 1 312 316 0 0 chr6 18597644 18597742 -163817500 - L2 LINE L2 -985 2329 2232 653 199 58 53 chr6 18597744 18597772 -163817470 + MLT1I LTR MaLR 1 27 -382 2132 129 3 0 chr6 18597772 18598066 -163817176 - AluSq SINE Alu -18 295 1 653 199 58 53 chr6 18598066 18598208 -163817034 + MLT1I LTR MaLR 27 172 -237 2350 84 3 7 chr6 18598221 18598517 -163816725 + AluSp SINE Alu 1 295 -18 1924 134 28 3 chr6 18598531 18598821 -163816421 + AluSg1 SINE Alu 1 297 -12 415 246 85 15 chr6 18598837 18598967 -163816275 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18598989 18599128 -163816114 - L2 LINE L2 -1097 2217 2077 1260 159 103 43 chr6 18599129 18599290 -163815952 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18599290 18599567 -163815675 + AluJo SINE Alu 4 285 -27 1260 159 103 43 chr6 18599567 18599707 -163815535 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18599710 18599822 -163815420 - AluSg/x SINE Alu -113 199 88 286 103 0 0 chr6 18599824 18599863 -163815379 + MLT1A1 LTR MaLR 327 365 0 1140 260 125 13 chr6 18599892 18600435 -163814807 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18600441 18600733 -163814509 - AluSx SINE Alu -16 296 1 2440 74 0 7 chr6 18600758 18601068 -163814174 - AluY SINE Alu -1 310 3 1754 127 37 40 chr6 18601070 18601369 -163813873 - AluSg SINE Alu -12 298 1 1029 291 40 24 chr6 18601458 18601880 -163813362 + L2 LINE L2 2805 3233 -80 402 139 0 14 chr6 18601998 18602070 -163813172 + AluSp/q SINE Alu 235 305 -8 242 125 0 0 chr6 18602070 18602110 -163813132 - Tigger1 DNA MER2_type -170 2248 2209 * 755 202 42 12 chr6 18602097 18602265 -163812977 - Tigger1 DNA MER2_type -2245 173 1 227 232 195 0 chr6 18602266 18602348 -163812894 + MER20B DNA MER1_type 686 783 0 198 308 31 23 chr6 18602368 18602498 -163812744 + L2 LINE L2 2259 2389 -925 496 188 119 0 chr6 18602765 18602823 -163812419 + MLT2B3 LTR ERVL 442 492 -62 457 88 25 0 chr6 18602823 18602903 -163812339 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 496 188 119 0 chr6 18602903 18602945 -163812297 + MLT2B3 LTR ERVL 492 554 0 5490 223 54 22 chr6 18602945 18602981 -163812261 + HERVL-B3 LTR ERVL 1 34 -5620 2176 112 7 0 chr6 18602981 18603275 -163811967 - AluSp SINE Alu -17 296 1 5490 223 54 22 chr6 18603275 18603540 -163811702 + HERVL-B3 LTR ERVL 34 289 -5365 4820 98 1 52 chr6 18603540 18604265 -163810977 - LTR12 LTR ERV1 0 688 1 5490 223 54 22 chr6 18604265 18605287 -163809955 + HERVL-B3 LTR ERVL 289 1368 -4286 367 264 160 0 chr6 18605449 18605593 -163809649 - MIR3 SINE MIR -1 207 41 183 42 0 0 chr6 18605607 18605631 -163809611 + (CA)n Simple_repeat Simple_repeat 2 25 0 2019 130 27 0 chr6 18605731 18606030 -163809212 + AluSx SINE Alu 1 307 -5 383 248 103 0 chr6 18606071 18606188 -163809054 + MIR SINE MIR 82 210 -52 373 268 67 22 chr6 18606190 18606290 -163808952 - MLT1L LTR MaLR -2 613 519 2437 88 0 3 chr6 18606290 18606595 -163808647 + AluY SINE Alu 1 304 -7 373 268 67 22 chr6 18606595 18606757 -163808485 - MLT1L LTR MaLR -96 519 228 1802 161 20 13 chr6 18608345 18608643 -163806599 - AluJb SINE Alu -12 300 1 186 293 98 24 chr6 18608707 18608789 -163806453 - L2 LINE L2 -32 3240 3153 263 329 37 0 chr6 18609002 18609084 -163806158 + MIR SINE MIR 98 182 -80 2399 84 0 3 chr6 18609774 18610070 -163805172 - AluSc SINE Alu -14 295 1 1033 179 0 16 chr6 18610087 18610271 -163804971 + FRAM SINE Alu 1 176 0 1158 120 0 0 chr6 18610546 18610704 -163804538 - AluSg/x SINE Alu -17 295 138 985 320 128 16 chr6 18610816 18611569 -163803673 + L3 LINE CR1 619 1455 -122 2316 94 0 0 chr6 18611769 18612057 -163803185 + AluSg SINE Alu 1 288 -22 1836 161 7 0 chr6 18612689 18612987 -163802255 - AluJo SINE Alu -12 300 1 1141 132 0 0 chr6 18612995 18613154 -163802088 - AluSg/x SINE Alu -20 290 132 1484 113 154 30 chr6 18613154 18613420 -163801822 - AluSg1 SINE Alu -10 299 1 186 218 333 39 chr6 18613996 18614152 -163801090 + MIR SINE MIR 53 254 -8 934 135 0 0 chr6 18614304 18614437 -163800805 + FLAM_C SINE Alu 1 133 0 2351 74 10 3 chr6 18614695 18614992 -163800250 + AluSc SINE Alu 1 299 -10 2593 62 0 3 chr6 18614992 18615301 -163799941 + AluY SINE Alu 1 308 -3 260 257 62 124 chr6 18615305 18615708 -163799534 + L2 LINE L2 2710 3087 -226 2059 129 0 14 chr6 18615940 18616260 -163798982 - AluSq SINE Alu 0 316 1 326 0 68 0 chr6 18616267 18616311 -163798931 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 1576 197 3 19 chr6 18616334 18616643 -163798599 - AluJo SINE Alu -8 304 1 2248 93 7 0 chr6 18616809 18617099 -163798143 - AluSc SINE Alu -17 292 1 2083 108 3 48 chr6 18617580 18617894 -163797348 - AluJb SINE Alu -12 300 1 420 182 45 0 chr6 18618117 18618205 -163797037 + MER69 DNA AcHobo 10 101 -2425 789 226 100 42 chr6 18618308 18618569 -163796673 + MER21B LTR ERV1 526 801 -62 370 206 93 21 chr6 18618676 18618773 -163796469 - MSTA LTR MaLR -202 226 123 2098 321 84 39 chr6 18619122 18619201 -163796041 - HERVL LTR ERVL -1442 4212 4138 1930 145 134 31 chr6 18619201 18619588 -163795654 + MSTA LTR MaLR 1 427 -1 2098 321 84 39 chr6 18619588 18619951 -163795291 - HERVL LTR ERVL -1516 4138 3793 2695 45 0 0 chr6 18619951 18620260 -163794982 - AluYa5 SINE Alu -2 309 1 2098 321 84 39 chr6 18620260 18621257 -163793985 - HERVL LTR ERVL -1861 3793 2707 887 238 60 55 chr6 18621259 18621614 -163793628 - L1MEc LINE L1 -4952 1263 788 1946 130 6 22 chr6 18621614 18621930 -163793312 + AluSx SINE Alu 1 311 -1 887 238 60 55 chr6 18621930 18622093 -163793149 - L1MEc LINE L1 -5427 788 627 605 330 32 16 chr6 18622572 18622887 -163792355 - L1MEc LINE L1 -5969 427 108 2422 46 39 0 chr6 18622900 18623183 -163792059 - AluY SINE Alu -17 294 1 2055 218 32 43 chr6 18623334 18623889 -163791353 - L1ME1 LINE L1 -44 6191 5643 1750 262 74 27 chr6 18623891 18624382 -163790860 - L1ME1 LINE L1 -3167 3048 2505 1628 211 7 3 chr6 18624382 18624686 -163790556 - AluJb SINE Alu -7 305 1 1750 262 74 27 chr6 18624686 18624977 -163790265 - L1ME1 LINE L1 -3710 2505 2229 275 237 232 16 chr6 18625039 18625233 -163790009 - L1ME1 LINE L1 -4115 2281 2046 2403 77 0 35 chr6 18625234 18625544 -163789698 + AluSx SINE Alu 1 299 -13 340 249 89 109 chr6 18625827 18626063 -163789179 + L1MEd LINE L1 538 777 -5342 1702 154 14 20 chr6 18626063 18626392 -163788850 - AluSx SINE Alu 0 327 1 340 249 89 109 chr6 18626392 18626533 -163788709 + L1MEd LINE L1 777 919 -5200 1692 189 0 3 chr6 18626533 18626830 -163788412 + AluJo SINE Alu 1 296 -16 340 249 89 109 chr6 18626830 18627020 -163788222 + L1MEd LINE L1 919 1097 -5022 2189 75 0 34 chr6 18627022 18627362 -163787880 + AluY SINE Alu 1 330 0 2306 98 3 0 chr6 18627376 18627672 -163787570 + AluSq SINE Alu 1 297 -16 6582 238 34 47 chr6 18628387 18630600 -163784642 + HERVFH21 LTR ERV1 304 2412 -4117 11703 161 19 7 chr6 18630726 18633008 -163782234 + HERVFH21 LTR ERV1 2290 4665 -1864 2079 128 14 0 chr6 18633192 18633481 -163781761 - AluSg SINE Alu -17 293 1 181 299 30 30 chr6 18633493 18633560 -163781682 - L2 LINE L2 -540 2774 2708 2222 102 7 0 chr6 18633560 18633853 -163781389 - AluSx SINE Alu -17 295 1 322 333 102 50 chr6 18633880 18634243 -163780999 + L1MEd LINE L1 1 382 -5737 2395 208 29 11 chr6 18634276 18634728 -163780514 + L1ME2 LINE L1 5526 6014 -154 2128 98 3 55 chr6 18634728 18635053 -163780189 + AluY SINE Alu 2 309 -2 2395 208 29 11 chr6 18635053 18635210 -163780032 + L1ME2 LINE L1 6014 6167 -1 338 316 20 59 chr6 18635545 18635697 -163779545 - L2 LINE L2 0 3313 3168 2385 103 0 0 chr6 18635749 18636060 -163779182 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr6 18636185 18636207 -163779035 + AT_rich Low_complexity Low_complexity 1 22 0 683 301 59 34 chr6 18636290 18636699 -163778543 + MLT1H1 LTR MaLR 10 533 -57 2321 81 3 10 chr6 18636702 18636998 -163778244 + AluSp SINE Alu 2 295 -18 1942 128 28 3 chr6 18637012 18637301 -163777941 + AluSg1 SINE Alu 1 296 -13 415 246 85 15 chr6 18637317 18637447 -163777795 + MLT1I LTR MaLR 258 396 -13 240 259 86 72 chr6 18637469 18637608 -163777634 - L2 LINE L2 -1097 2217 2077 1279 156 103 43 chr6 18637609 18637770 -163777472 + MLT1A1 LTR MaLR 1 151 -214 1735 173 18 0 chr6 18637770 18638047 -163777195 + AluJo SINE Alu 4 285 -27 1279 156 103 43 chr6 18638047 18638187 -163777055 + MLT1A1 LTR MaLR 151 320 -45 864 107 0 0 chr6 18638190 18638302 -163776940 - AluSg/x SINE Alu -113 197 86 286 103 0 0 chr6 18638304 18638343 -163776899 + MLT1A1 LTR MaLR 336 374 0 1172 256 125 13 chr6 18638372 18638915 -163776327 - L2 LINE L2 -1293 2021 1418 2105 127 14 0 chr6 18638921 18639213 -163776029 - AluSx SINE Alu -16 296 1 1755 74 4 9 chr6 18639238 18639469 -163775773 - AluY SINE Alu -1 310 81 2222 114 0 7 chr6 18639846 18640154 -163775088 - AluSx SINE Alu -6 306 1 268 312 104 32 chr6 18640496 18640746 -163774496 + MLT1L LTR MaLR 302 569 -46 2265 108 0 0 chr6 18640757 18641064 -163774178 - AluY SINE Alu -4 307 1 2438 74 6 10 chr6 18641141 18641453 -163773789 - AluY SINE Alu 0 311 1 2243 128 0 0 chr6 18641475 18641780 -163773462 - AluSx SINE Alu -5 307 3 2254 248 13 6 chr6 18641828 18642376 -163772866 - L1ME1 LINE L1 -140 6026 5475 24 67 0 0 chr6 18643006 18643051 -163772191 + AT_rich Low_complexity Low_complexity 1 45 0 2473 64 3 3 chr6 18643062 18643358 -163771884 - AluSx SINE Alu -16 296 1 1556 164 25 29 chr6 18643848 18644122 -163771120 - AluJo SINE Alu -29 283 11 1979 80 53 4 chr6 18644230 18644492 -163770750 - AluSc SINE Alu -15 294 20 317 314 31 19 chr6 18644685 18644844 -163770398 - L1MC4a LINE L1 -1941 5867 5707 673 254 65 14 chr6 18644868 18645085 -163770157 - MIR SINE MIR -11 251 24 2113 313 26 26 chr6 18646603 18647631 -163767611 + HERVFH21 LTR ERV1 5502 6529 0 801 179 105 83 chr6 18647661 18648024 -163767218 + LTR21B LTR ERV1 68 438 0 739 278 76 4 chr6 18648165 18648485 -163766757 + MLT1I LTR MaLR 21 363 -46 2104 51 94 0 chr6 18649296 18649551 -163765691 + AluY SINE Alu 1 279 -32 341 58 19 0 chr6 18649551 18649603 -163765639 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 227 278 72 10 chr6 18649655 18649752 -163765490 + L2 LINE L2 1241 1343 -1971 * 1023 291 40 24 chr6 18649748 18650170 -163765072 - L2 LINE L2 -80 3233 2805 2518 61 0 0 chr6 18650259 18650556 -163764686 + AluY SINE Alu 1 297 -14 1365 95 0 0 chr6 18650557 18650725 -163764517 + AluSg/x SINE Alu 132 299 -11 1596 150 44 47 chr6 18650901 18651036 -163764206 - MER44D DNA MER2_type -1882 609 475 2103 102 7 14 chr6 18651036 18651330 -163763912 + AluSx SINE Alu 1 292 -20 1596 150 44 47 chr6 18651330 18651434 -163763808 - MER44D DNA MER2_type -2016 475 372 180 0 0 0 chr6 18651434 18651454 -163763788 + (TC)n Simple_repeat Simple_repeat 1 20 0 1596 150 44 47 chr6 18651454 18651552 -163763690 - MER44D DNA MER2_type -2119 372 2 249 231 15 0 chr6 18651556 18651621 -163763621 - L1M4c LINE L1 -5012 1372 1307 26 0 0 0 chr6 18651624 18651650 -163763592 + AT_rich Low_complexity Low_complexity 1 26 0 1115 129 8 133 chr6 18651806 18651845 -163763397 - L1MA7 LINE L1 -115 6176 6134 1862 142 9 41 chr6 18651845 18652163 -163763079 - AluJb SINE Alu -4 308 1 1115 129 8 133 chr6 18652163 18652386 -163762856 - L1MA7 LINE L1 -157 6134 5947 1717 151 63 6 chr6 18652468 18652599 -163762643 - L1MA7 LINE L1 -360 5931 5809 198 0 0 0 chr6 18652599 18652621 -163762621 + (TG)n Simple_repeat Simple_repeat 1 22 0 1717 151 63 6 chr6 18652621 18652806 -163762436 - L1MA7 LINE L1 -482 5809 5597 190 230 223 50 chr6 18653230 18653369 -163761873 - MIR SINE MIR -47 215 53 2103 191 26 26 chr6 18653379 18653448 -163761794 - MSTB LTR MaLR -2 424 356 2368 90 0 13 chr6 18653448 18653760 -163761482 + AluY SINE Alu 1 308 -3 2103 191 26 26 chr6 18653760 18654114 -163761128 - MSTB LTR MaLR -69 357 1 2486 68 3 7 chr6 18654532 18654840 -163760402 - AluY SINE Alu -4 307 1 186 43 0 0 chr6 18655171 18655194 -163760048 + (TG)n Simple_repeat Simple_repeat 2 24 0 2123 100 3 21 chr6 18655194 18655483 -163759759 - AluY SINE Alu -27 284 1 2089 122 10 0 chr6 18656060 18656356 -163758886 + AluSx SINE Alu 1 299 -13 1195 165 78 0 chr6 18656366 18656596 -163758646 + L1MB3 LINE L1 5893 6140 -43 1451 103 5 9 chr6 18656599 18656812 -163758430 + AluY SINE Alu 1 212 -99 465 98 0 0 chr6 18656912 18656973 -163758269 - Alu SINE Alu -248 62 2 1140 200 102 98 chr6 18656976 18657192 -163758050 - L1M4 LINE L1 -861 5285 5071 2271 113 3 0 chr6 18657192 18657492 -163757750 - AluSx SINE Alu -11 301 1 1140 200 102 98 chr6 18657492 18657764 -163757478 - L1M4 LINE L1 -1075 5071 4795 731 255 64 15 chr6 18657775 18657979 -163757263 + MER58A DNA MER1_type 11 224 0 1138 186 32 20 chr6 18657990 18658238 -163757004 - L1M4 LINE L1 -1357 4789 4539 1164 176 83 31 chr6 18658330 18658495 -163756747 + MER2 DNA MER2_type 41 196 -149 186 43 0 0 chr6 18658495 18658518 -163756724 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 918 177 6 12 chr6 18658519 18658683 -163756559 - FRAM SINE Alu -2 164 2 1164 176 83 31 chr6 18658683 18658805 -163756437 + MER2 DNA MER2_type 195 345 0 4027 215 41 71 chr6 18658805 18658967 -163756275 - L1M4 LINE L1 -1603 4543 4378 2407 80 6 13 chr6 18658967 18659279 -163755963 + AluY SINE Alu 1 310 -1 4027 215 41 71 chr6 18659279 18660676 -163754566 - L1M4 LINE L1 -1768 4378 3031 1160 219 29 0 chr6 18660679 18660921 -163754321 + Cheshire DNA MER1_type 1550 1798 -622 2147 174 61 9 chr6 18660924 18661367 -163753875 + Cheshire DNA MER1_type 1955 2420 0 406 184 22 50 chr6 18661603 18661782 -163753460 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 249 195 39 0 chr6 18661798 18661875 -163753367 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 6167 94 4 34 chr6 18661896 18662022 -163753220 - L1PB2 LINE L1 -4 6147 6019 2323 82 0 3 chr6 18662022 18662314 -163752928 - AluY SINE Alu -19 292 2 6167 94 4 34 chr6 18662314 18662569 -163752673 - L1PB2 LINE L1 -132 6019 5758 2373 103 0 0 chr6 18662569 18662869 -163752373 - AluSq SINE Alu -13 300 1 6167 94 4 34 chr6 18662869 18663449 -163751793 - L1PB2 LINE L1 -393 5758 5214 601 254 30 5 chr6 18663515 18663716 -163751526 - MER69 DNA AcHobo -165 2361 2156 * 2697 249 27 47 chr6 18663714 18663818 -163751424 - MER69 DNA AcHobo -1591 935 830 2326 105 0 10 chr6 18663818 18664131 -163751111 + AluSx SINE Alu 1 310 -2 2697 249 27 47 chr6 18664131 18664378 -163750864 - MER69 DNA AcHobo -1696 830 580 1678 183 3 14 chr6 18664378 18664696 -163750546 - AluJb SINE Alu 0 315 1 2697 249 27 47 chr6 18664696 18665050 -163750192 - MER69 DNA AcHobo -1946 580 242 526 176 73 39 chr6 18665187 18665392 -163749850 - Charlie5 DNA MER1_type 0 2618 2407 862 226 5 16 chr6 18665392 18665582 -163749660 - MER69 DNA AcHobo -2318 208 21 266 53 26 0 chr6 18665606 18665644 -163749598 + MADE1 DNA Mariner 42 80 0 1863 133 61 0 chr6 18665769 18666048 -163749194 + AluSq SINE Alu 1 296 -17 2033 121 0 21 chr6 18666052 18666364 -163748878 + AluSg SINE Alu 1 306 0 983 188 45 55 chr6 18666708 18666928 -163748314 + MER33 DNA MER1_type 19 237 -2348 2239 101 3 26 chr6 18666928 18667235 -163748007 - AluSx SINE Alu -12 300 1 983 188 45 55 chr6 18667235 18667323 -163747919 + MER33 DNA MER1_type 237 324 0 2355 82 3 0 chr6 18667826 18668108 -163747134 + AluSg SINE Alu 1 283 -27 850 149 44 135 chr6 18668126 18668291 -163746951 + L1 LINE L1 3819 3997 -2149 2269 70 0 21 chr6 18668291 18668577 -163746665 + AluY SINE Alu 1 280 -31 207 0 0 0 chr6 18668582 18668605 -163746637 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 850 149 44 135 chr6 18668605 18668629 -163746613 + L1 LINE L1 4001 4026 -2120 1810 163 0 46 chr6 18668629 18668955 -163746287 + AluJb SINE Alu 2 312 0 850 149 44 135 chr6 18668955 18669054 -163746188 + L1 LINE L1 4026 4087 -2059 2463 39 0 0 chr6 18669093 18669426 -163745816 - AluY SINE Alu 0 335 3 484 139 106 4 chr6 18669437 18669558 -163745684 - L1M4 LINE L1 -675 5480 5365 264 30 0 0 chr6 18669570 18669603 -163745639 + (CA)n Simple_repeat Simple_repeat 2 34 0 1977 162 0 0 chr6 18670036 18670333 -163744909 + AluSx SINE Alu 3 299 -13 725 247 0 0 chr6 18670387 18670549 -163744693 + L1ME1 LINE L1 5428 5589 -577 1125 159 0 11 chr6 18670550 18670726 -163744516 + AluSg/x SINE Alu 127 300 -10 1667 251 62 33 chr6 18670730 18671281 -163743961 + L1ME1 LINE L1 5596 6162 -4 2426 57 0 0 chr6 18671303 18671584 -163743658 + AluY SINE Alu 16 296 -15 1878 181 0 0 chr6 18671698 18672001 -163743241 - AluJb SINE Alu -7 305 3 296 269 27 81 chr6 18672136 18672322 -163742920 - MER3 DNA MER1_type 0 209 34 1796 184 7 0 chr6 18672368 18672672 -163742570 - AluJb SINE Alu -6 306 1 2484 87 0 0 chr6 18672821 18673130 -163742112 + AluSx SINE Alu 1 309 -3 2097 122 0 14 chr6 18674142 18674462 -163740780 - AluSq SINE Alu 0 316 1 1535 195 3 20 chr6 18674469 18674895 -163740347 - AluJo SINE Alu 0 421 1 2317 89 7 0 chr6 18675061 18675353 -163739889 - AluSc SINE Alu -15 294 1 1690 188 30 0 chr6 18676193 18676491 -163738751 + AluJo SINE Alu 1 307 -5 191 35 0 35 chr6 18676491 18676520 -163738722 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1999 165 0 0 chr6 18676520 18676823 -163738419 + AluJb SINE Alu 1 303 -9 566 176 0 8 chr6 18676848 18676973 -163738269 + GA-rich Low_complexity Low_complexity 4 127 0 604 156 0 0 chr6 18677018 18677108 -163738134 - Tigger5 DNA MER2_type 0 2323 2234 1791 174 34 0 chr6 18677154 18677482 -163737760 - L1MA7 LINE L1 -27 6264 5926 2591 65 0 0 chr6 18677911 18678221 -163737021 - AluY SINE Alu -1 310 1 188 159 0 23 chr6 18678763 18678807 -163736435 - L2 LINE L2 -4 3309 3267 2190 99 7 20 chr6 18679026 18679328 -163735914 - AluSx SINE Alu -14 298 1 2269 84 0 0 chr6 18679848 18680122 -163735120 + AluY SINE Alu 1 274 -37 180 0 0 0 chr6 18680126 18680146 -163735096 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2865 7 0 0 chr6 18680596 18680897 -163734345 + AluYa5 SINE Alu 2 302 -9 3421 188 20 40 chr6 18681292 18681491 -163733751 + MER44D DNA MER2_type 18 219 -2368 1348 157 36 5 chr6 18681491 18681714 -163733528 - MER30 DNA MER1_type 0 230 1 3421 188 20 40 chr6 18681714 18681797 -163733445 + MER44D DNA MER2_type 219 302 -2285 2435 120 72 8 chr6 18681797 18682197 -163733045 + MSTA LTR MaLR 1 426 -2 3421 188 20 40 chr6 18682197 18682615 -163732627 + MER44D DNA MER2_type 302 705 0 191 314 107 50 chr6 18683215 18683336 -163731906 - L2 LINE L2 -10 3303 3176 202 330 0 23 chr6 18685258 18685346 -163729896 + C-rich Low_complexity Low_complexity 4 89 0 216 258 11 70 chr6 18685566 18685752 -163729490 + G-rich Low_complexity Low_complexity 3 177 0 29 60 0 0 chr6 18685856 18685906 -163729336 + GC_rich Low_complexity Low_complexity 1 50 0 1051 235 80 37 chr6 18686987 18687311 -163727931 - MER58B DNA MER1_type -1 340 3 5157 162 11 13 chr6 18687644 18688632 -163726610 + L1MB8 LINE L1 5195 6178 0 2159 117 0 0 chr6 18688856 18689147 -163726095 - AluSx SINE Alu -21 291 1 2603 52 0 3 chr6 18689200 18689508 -163725734 + AluY SINE Alu 1 307 -4 468 256 36 23 chr6 18689515 18689697 -163725545 - L1P4 LINE L1 -341 5824 5641 1207 162 68 26 chr6 18690285 18690316 -163724926 - L1MB3 LINE L1 -15 6168 6140 2490 71 0 0 chr6 18690316 18690611 -163724631 - AluY SINE Alu -16 295 1 1207 162 68 26 chr6 18690611 18690844 -163724398 - L1MB3 LINE L1 -43 6140 5893 2102 118 10 0 chr6 18690854 18691150 -163724092 - AluSx SINE Alu -13 299 1 2123 100 3 21 chr6 18691727 18692016 -163723226 + AluY SINE Alu 1 284 -27 186 43 0 0 chr6 18692016 18692039 -163723203 + (CA)n Simple_repeat Simple_repeat 2 24 0 2504 70 0 7 chr6 18692369 18692671 -163722571 + AluY SINE Alu 1 300 -11 2021 131 64 12 chr6 18692872 18693215 -163722027 + MLT1A1 LTR MaLR 1 361 -4 569 284 38 54 chr6 18693818 18694079 -163721163 + Charlie2 DNA MER1_type 1 257 -2605 350 248 17 26 chr6 18694188 18694303 -163720939 + Charlie2 DNA MER1_type 1857 1970 -892 1048 199 143 56 chr6 18694303 18694695 -163720547 - LTR37A LTR ERV1 0 426 1 1470 217 92 41 chr6 18694740 18694878 -163720364 + Charlie2 DNA MER1_type 2034 2164 -698 2296 106 0 3 chr6 18694878 18695190 -163720052 - AluSx SINE Alu -1 311 1 1470 217 92 41 chr6 18695190 18695805 -163719437 + Charlie2 DNA MER1_type 2164 2862 0 2335 95 0 16 chr6 18695977 18696111 -163719131 + AluSg SINE Alu 1 136 -174 2503 64 0 0 chr6 18696111 18696408 -163718834 + AluY SINE Alu 1 297 -14 2335 95 0 16 chr6 18696408 18696577 -163718665 + AluSg SINE Alu 136 299 -11 1789 139 41 44 chr6 18696753 18696888 -163718354 - MER44D DNA MER2_type -1882 609 475 2090 105 7 14 chr6 18696888 18697182 -163718060 + AluSx SINE Alu 1 292 -20 1789 139 41 44 chr6 18697182 18697286 -163717956 - MER44D DNA MER2_type -2016 475 372 288 0 0 0 chr6 18697286 18697318 -163717924 + (TC)n Simple_repeat Simple_repeat 1 32 0 1789 139 41 44 chr6 18697318 18697416 -163717826 - MER44D DNA MER2_type -2119 372 2 185 0 0 39 chr6 18697489 18697515 -163717727 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1984 153 0 0 chr6 18697534 18697828 -163717414 - AluJo SINE Alu -18 294 1 298 295 179 12 chr6 18697864 18698037 -163717205 - L1ME LINE L1 -5625 445 244 2238 108 7 0 chr6 18698182 18698479 -163716763 - AluSg SINE Alu -11 299 1 1085 154 0 12 chr6 18699112 18699281 -163715961 + FRAM SINE Alu 1 161 -15 2287 107 0 7 chr6 18699282 18699590 -163715652 + AluSx SINE Alu 1 306 -6 1744 138 70 121 chr6 18699883 18700338 -163714904 - MSTB1 LTR MaLR 0 432 1 2330 78 3 29 chr6 18700448 18700756 -163714486 - AluY SINE Alu -11 300 1 2240 110 0 0 chr6 18700877 18701168 -163714074 + AluSx SINE Alu 1 291 -21 348 233 113 63 chr6 18702035 18702194 -163713048 + MER5A DNA MER1_type 1 167 -22 2134 80 45 11 chr6 18702360 18702646 -163712596 - AluY SINE Alu -15 296 1 3532 186 25 11 chr6 18702767 18703476 -163711766 - L1MB7 LINE L1 -212 5972 5254 2333 104 0 0 chr6 18705559 18705856 -163709386 + AluSx SINE Alu 1 297 -15 6105 72 2 19 chr6 18706051 18706858 -163708384 - L1PA8A LINE L1 0 6131 5338 733 254 135 55 chr6 18708209 18708594 -163706648 + HAL1 LINE L1 2092 2507 0 1464 204 10 23 chr6 18708600 18708899 -163706343 + AluJo SINE Alu 3 297 -15 2009 143 3 0 chr6 18709062 18709362 -163705880 - AluJb SINE Alu -11 301 1 1293 116 0 0 chr6 18711476 18711648 -163703594 - AluSg/x SINE Alu -17 293 122 2412 94 3 0 chr6 18711648 18711957 -163703285 - AluSg SINE Alu 0 310 1 23 0 0 0 chr6 18712154 18712177 -163703065 + AT_rich Low_complexity Low_complexity 1 23 0 3541 86 8 15 chr6 18712707 18713185 -163702057 + L1PB2 LINE L1 5676 6150 -1 934 172 0 0 chr6 18713683 18713834 -163701408 - FRAM SINE Alu -25 151 1 2338 106 0 0 chr6 18714134 18714436 -163700806 - AluY SINE Alu -9 302 1 21 57 0 0 chr6 18714602 18714637 -163700605 + AT_rich Low_complexity Low_complexity 1 35 0 760 161 21 94 chr6 18714637 18714829 -163700413 + MER53 DNA DNA 12 189 0 25 0 0 0 chr6 18715536 18715561 -163699681 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr6 18715860 18715883 -163699359 + AT_rich Low_complexity Low_complexity 1 23 0 2414 48 3 7 chr6 18715911 18716203 -163699039 + AluY SINE Alu 5 295 -16 254 287 134 38 chr6 18717352 18717509 -163697733 + MIR SINE MIR 20 191 -71 1833 157 7 0 chr6 18717602 18717917 -163697325 + AluSx SINE Alu 3 319 0 2281 101 3 10 chr6 18718014 18718322 -163696920 - AluSx SINE Alu -6 306 1 757 287 148 22 chr6 18718625 18719192 -163696050 - L2 LINE L2 0 3313 2683 4351 146 42 3 chr6 18719244 18719941 -163695301 + L1MB2 LINE L1 5441 6164 -7 203 279 16 16 chr6 18719975 18720036 -163695206 - L3 LINE CR1 -1 1576 1516 2352 4 0 0 chr6 18720327 18720573 -163694669 + L1PA2 LINE L1 5908 6153 -2 221 182 0 30 chr6 18721477 18721543 -163693699 + GA-rich Low_complexity Low_complexity 1 64 0 2391 84 0 0 chr6 18722328 18722624 -163692618 - AluSg SINE Alu -14 296 1 1706 138 8 0 chr6 18722851 18723105 -163692137 + L1PA15 LINE L1 5905 6160 -5 34 0 0 0 chr6 18723112 18723146 -163692096 + AT_rich Low_complexity Low_complexity 1 34 0 282 235 5 53 chr6 18724538 18724725 -163690517 + CT-rich Low_complexity Low_complexity 2 179 0 * 340 116 14 29 chr6 18724707 18724776 -163690466 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 255 270 70 78 chr6 18724803 18724918 -163690324 - MIR SINE MIR -67 141 28 2371 109 0 0 chr6 18726004 18726316 -163688926 - AluSx SINE Alu 0 312 1 488 213 109 11 chr6 18726415 18726589 -163688653 - L1MC4a LINE L1 -1758 6050 5860 * 8216 3 0 0 chr6 18726583 18727482 -163687760 + L1HS LINE L1 5257 6155 0 183 42 0 0 chr6 18727505 18727529 -163687713 + (A)n Simple_repeat Simple_repeat 1 24 0 794 231 129 0 chr6 18727529 18727754 -163687488 - L1MC4a LINE L1 -1937 5871 5618 546 91 0 0 chr6 18727855 18727932 -163687310 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1924 128 7 35 chr6 18727932 18728220 -163687022 - AluSx SINE Alu -32 280 1 491 247 58 54 chr6 18728225 18728607 -163686635 - LTR33 LTR ERVL -42 479 34 * 3572 102 12 8 chr6 18728569 18729051 -163686191 + MER1A DNA MER1_type 46 529 0 298 162 44 15 chr6 18729054 18729122 -163686120 - LTR33 LTR ERVL -436 85 16 1043 243 48 40 chr6 18729126 18729384 -163685858 - L1MC4a LINE L1 -2174 5634 5371 2159 112 0 14 chr6 18729384 18729678 -163685564 + AluSg SINE Alu 1 290 -20 1043 243 48 40 chr6 18729678 18729797 -163685445 - L1MC4a LINE L1 -2437 5371 5254 2267 106 0 0 chr6 18729873 18730174 -163685068 + AluSg SINE Alu 1 301 -9 2453 82 0 3 chr6 18730221 18730526 -163684716 - AluY SINE Alu -7 304 1 2328 108 0 0 chr6 18730619 18730924 -163684318 + AluSg SINE Alu 2 306 -4 707 297 112 47 chr6 18730945 18731243 -163683999 - L1MC4a LINE L1 -1098 5048 4771 2930 126 139 30 chr6 18731243 18731718 -163683524 - MER1A DNA MER1_type 0 527 1 707 297 112 47 chr6 18731718 18732394 -163682848 - L1MC4a LINE L1 -1375 4771 4140 311 0 26 0 chr6 18732394 18732433 -163682809 + (TG)n Simple_repeat Simple_repeat 1 40 0 707 297 112 47 chr6 18732433 18732464 -163682778 - L1MC4a LINE L1 -2006 4140 4112 2998 69 0 0 chr6 18732464 18732824 -163682418 - L1PA6 LINE L1 -6 6148 5789 707 297 112 47 chr6 18732824 18732980 -163682262 - L1MC4a LINE L1 -2034 4112 3810 26 0 0 0 chr6 18733151 18733177 -163682065 + AT_rich Low_complexity Low_complexity 1 26 0 1995 139 0 7 chr6 18733278 18733572 -163681670 - AluJb SINE Alu -20 292 1 22 0 0 0 chr6 18733711 18733733 -163681509 + AT_rich Low_complexity Low_complexity 1 22 0 200 386 23 0 chr6 18734010 18734098 -163681144 + MIR SINE MIR 32 121 -87 759 188 0 0 chr6 18734394 18734511 -163680731 + AluJo/FLAM SINE Alu 2 118 -194 2045 133 3 0 chr6 18734511 18734804 -163680438 - AluSx SINE Alu -18 294 1 980 186 6 0 chr6 18734889 18735056 -163680186 + FRAM SINE Alu 1 164 -12 219 36 0 0 chr6 18735354 18735382 -163679860 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr6 18735780 18735802 -163679440 + AT_rich Low_complexity Low_complexity 1 22 0 2359 86 0 13 chr6 18736144 18736446 -163678796 + AluSc SINE Alu 1 298 -11 360 0 0 0 chr6 18736592 18736632 -163678610 + (CA)n Simple_repeat Simple_repeat 1 40 0 2136 122 0 0 chr6 18736908 18737194 -163678048 - AluSx SINE Alu -26 286 1 849 204 98 36 chr6 18737671 18737945 -163677297 + MER5C DNA MER1_type 33 323 -1 300 260 96 34 chr6 18738358 18738504 -163676738 + L1ME4a LINE L1 5963 6117 -4 1285 154 90 79 chr6 18738828 18739107 -163676135 - AluJo SINE Alu -30 282 1 288 373 82 0 chr6 18739208 18739293 -163675949 - MIR SINE MIR -6 256 179 2138 113 3 0 chr6 18739293 18739585 -163675657 - AluSx SINE Alu -19 293 1 288 373 82 0 chr6 18739585 18739732 -163675510 - MIR SINE MIR -83 179 5 302 275 6 75 chr6 18740465 18740556 -163674686 - L1ME4a LINE L1 -212 5909 5832 2230 96 10 0 chr6 18740556 18740849 -163674393 - AluSq SINE Alu -17 296 1 302 275 6 75 chr6 18740849 18740917 -163674325 - L1ME4a LINE L1 -289 5832 5761 233 315 14 0 chr6 18740999 18741072 -163674170 + MER96 DNA MER1_type? 102 175 0 352 282 63 53 chr6 18741120 18741187 -163674055 - L1ME4a LINE L1 -2063 5745 5680 2209 117 0 7 chr6 18741187 18741496 -163673746 - AluSq SINE Alu -6 307 1 352 282 63 53 chr6 18741496 18741634 -163673608 - L1ME4a LINE L1 -2128 5680 5538 2372 71 3 0 chr6 18741843 18742137 -163673105 - AluY SINE Alu -16 295 1 22 0 0 0 chr6 18742434 18742456 -163672786 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 18743019 18743043 -163672199 + AT_rich Low_complexity Low_complexity 1 24 0 197 233 96 68 chr6 18743227 18743300 -163671942 + L2 LINE L2 3179 3253 -19 2317 88 0 0 chr6 18743302 18743597 -163671645 - AluSx SINE Alu -17 295 1 273 254 112 37 chr6 18743664 18743798 -163671444 - L1ME4a LINE L1 -1 6120 5977 185 327 83 71 chr6 18745358 18745526 -163669716 - L2 LINE L2 -30 3242 3073 1702 127 46 81 chr6 18745674 18745997 -163669245 - AluJb SINE Alu 0 312 1 210 302 62 0 chr6 18746031 18746127 -163669115 - L2 LINE L2 -422 2892 2791 187 356 159 38 chr6 18746616 18746748 -163668494 + MIR3 SINE MIR 19 166 -42 3815 148 42 23 chr6 18746774 18747327 -163667915 + MER50 LTR ERV1 1 571 -163 2439 75 0 0 chr6 18747327 18747622 -163667620 - AluY SINE Alu -16 295 1 3815 148 42 23 chr6 18747622 18747766 -163667476 + MER50 LTR ERV1 571 711 -23 922 192 68 0 chr6 18747865 18748042 -163667200 + MER5A DNA MER1_type 1 189 0 206 219 0 0 chr6 18750666 18750707 -163664535 + GA-rich Low_complexity Low_complexity 2 42 0 2312 238 125 29 chr6 18751589 18752516 -163662726 + HAL1b LINE L1 43 1058 -290 1990 155 0 3 chr6 18752654 18752963 -163662279 + AluJo SINE Alu 2 309 -3 2011 143 0 23 chr6 18753006 18753314 -163661928 - AluSx SINE Alu -11 301 1 25 0 0 0 chr6 18753470 18753495 -163661747 + AT_rich Low_complexity Low_complexity 1 25 0 2590 61 0 3 chr6 18753498 18753810 -163661432 + AluY SINE Alu 1 311 0 3256 161 29 11 chr6 18754174 18754733 -163660509 - L1MB8 LINE L1 0 6178 5610 377 273 40 0 chr6 18755409 18755508 -163659734 - MER5A DNA MER1_type -61 128 26 24 0 0 0 chr6 18756066 18756090 -163659152 + AT_rich Low_complexity Low_complexity 1 24 0 689 290 0 0 chr6 18756273 18756435 -163658807 - MER5B DNA MER1_type -6 172 11 862 207 18 35 chr6 18756972 18757141 -163658101 - FRAM SINE Alu 0 166 1 2809 156 4 24 chr6 18757389 18757856 -163657386 - LTR32 LTR ERVL 0 471 14 954 186 11 0 chr6 18758063 18758240 -163657002 - MER5A DNA MER1_type 0 189 11 612 223 153 0 chr6 18758333 18758490 -163656752 - MER5A DNA MER1_type 0 189 9 432 274 0 35 chr6 18758591 18758704 -163656538 - MLT1I LTR MaLR -9 400 292 977 119 7 7 chr6 18758958 18759101 -163656141 + MLT1E3 LTR MaLR 480 622 -2 3180 99 11 38 chr6 18759146 18759314 -163655928 - L1MA2 LINE L1 0 6304 6133 2143 118 0 3 chr6 18759314 18759610 -163655632 - AluSg SINE Alu -15 295 1 3180 99 11 38 chr6 18759610 18759916 -163655326 - L1MA2 LINE L1 -171 6133 5843 408 228 162 15 chr6 18760176 18760312 -163654930 + MER112 DNA MER1_type 97 252 -8 180 0 0 0 chr6 18760818 18760838 -163654404 + (CACCT)n Simple_repeat Simple_repeat 1 20 0 414 53 0 0 chr6 18761178 18761235 -163654007 + (TG)n Simple_repeat Simple_repeat 2 58 0 226 356 0 14 chr6 18761827 18761900 -163653342 + MIR SINE MIR 14 85 -177 471 226 0 9 chr6 18762039 18762145 -163653097 + MIR SINE MIR 88 192 -70 714 271 200 8 chr6 18762187 18762552 -163652690 - MLT1J1 LTR MaLR -2 444 10 2516 54 3 0 chr6 18763338 18763633 -163651609 + AluY SINE Alu 1 296 -15 2875 3 0 0 chr6 18763840 18764141 -163651101 + AluYa5 SINE Alu 1 301 -10 21 36 0 0 chr6 18765718 18765746 -163649496 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr6 18765973 18765998 -163649244 + (T)n Simple_repeat Simple_repeat 1 25 0 2447 95 0 0 chr6 18766702 18767006 -163648236 + AluSg SINE Alu 1 304 -6 2385 77 6 13 chr6 18768649 18768961 -163646281 - AluSx SINE Alu -2 310 1 231 120 53 27 chr6 18769770 18769845 -163645397 + (TA)n Simple_repeat Simple_repeat 2 78 0 1777 174 0 36 chr6 18769929 18770233 -163645009 - AluSx SINE Alu -19 293 1 187 325 56 30 chr6 18771033 18771230 -163644012 + L2 LINE L2 2369 2570 -744 268 268 8 8 chr6 18771244 18771371 -163643871 + GA-rich Low_complexity Low_complexity 3 129 0 2560 54 0 19 chr6 18771388 18771702 -163643540 - AluY SINE Alu -3 308 1 2088 80 31 77 chr6 18772552 18772877 -163642365 - AluSq SINE Alu -2 311 2 2208 193 17 25 chr6 18773927 18774032 -163641210 - MLT1C LTR MaLR 0 467 363 2298 44 68 14 chr6 18774032 18774325 -163640917 + AluSc SINE Alu 1 309 0 2208 193 17 25 chr6 18774325 18774690 -163640552 - MLT1C LTR MaLR -104 363 1 770 177 0 0 chr6 18777851 18777975 -163637267 + FLAM_A SINE Alu 1 124 -9 1920 145 7 7 chr6 18778111 18778407 -163636835 + AluJb SINE Alu 1 296 -16 232 231 0 0 chr6 18778864 18778916 -163636326 - L2 LINE L2 0 3313 3262 2334 77 0 3 chr6 18779240 18779558 -163635684 - AluSq SINE Alu 0 317 1 185 0 40 0 chr6 18779560 18779585 -163635657 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1525 147 47 0 chr6 18779585 18779734 -163635508 - AluJo SINE Alu -31 281 116 207 0 0 0 chr6 18779734 18779757 -163635485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1525 147 47 0 chr6 18779757 18779839 -163635403 - AluJo SINE Alu -196 116 39 833 197 0 14 chr6 18779848 18779995 -163635247 - AluJo SINE Alu -167 145 1 219 261 62 0 chr6 18780412 18780477 -163634765 + MIR SINE MIR 118 186 -76 180 293 52 17 chr6 18780688 18780746 -163634496 - MIR SINE MIR -124 84 25 2305 114 0 0 chr6 18780939 18781246 -163633996 + AluSg SINE Alu 1 307 -3 354 284 95 0 chr6 18781507 18781623 -163633619 - L2 LINE L2 0 3272 3146 1993 226 126 31 chr6 18781660 18782360 -163632882 + MER20B DNA MER1_type 6 771 -12 469 302 104 31 chr6 18783442 18783664 -163631578 + MIR SINE MIR 19 256 -6 389 246 80 0 chr6 18784581 18784719 -163630523 + L2 LINE L2 3149 3297 -16 1855 263 67 43 chr6 18785646 18786469 -163628773 + L2 LINE L2 2326 3185 -128 1772 194 88 50 chr6 18786469 18786970 -163628272 + MLT2B1 LTR ERVL 1 520 0 1855 263 67 43 chr6 18786970 18787102 -163628140 + L2 LINE L2 3185 3312 -1 332 278 99 13 chr6 18788052 18788203 -163627039 + MER103 DNA DNA 1 164 -2 791 182 0 0 chr6 18788280 18788412 -163626830 - FLAM_C SINE Alu 0 133 2 2338 67 0 3 chr6 18790490 18790816 -163624426 - AluY SINE Alu 0 325 1 2377 95 0 0 chr6 18790912 18791208 -163624034 + AluSx SINE Alu 9 304 -8 1746 134 7 11 chr6 18791360 18791636 -163623606 + AluJo SINE Alu 6 280 -32 297 0 0 0 chr6 18791636 18791669 -163623573 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 405 109 0 0 chr6 18792108 18792172 -163623070 + (TA)n Simple_repeat Simple_repeat 2 65 0 913 56 0 0 chr6 18792175 18792283 -163622959 - AluSc SINE Alu -30 279 172 319 28 0 0 chr6 18793061 18793097 -163622145 - U2 snRNA snRNA -152 36 1 251 271 42 28 chr6 18793115 18793259 -163621983 + L1ME4a LINE L1 5976 6121 0 1550 107 154 136 chr6 18794928 18795114 -163620128 - MLT1B LTR MaLR 0 390 209 2085 110 37 20 chr6 18795114 18795413 -163619829 + AluSq SINE Alu 1 304 -9 1550 107 154 136 chr6 18795413 18795609 -163619633 - MLT1B LTR MaLR -181 209 1 576 339 16 8 chr6 18795976 18796218 -163619024 - MIR SINE MIR -6 256 13 347 225 63 27 chr6 18796324 18796435 -163618807 + MIR3 SINE MIR 43 157 -51 459 239 96 16 chr6 18796445 18796502 -163618740 + MER112 DNA MER1_type 8 59 -201 201 39 0 0 chr6 18796502 18796528 -163618714 + (CA)n Simple_repeat Simple_repeat 2 27 0 459 239 96 16 chr6 18796528 18796658 -163618584 + MER112 DNA MER1_type 59 210 -50 391 274 211 5 chr6 18796849 18797053 -163618189 - MIR SINE MIR 0 262 17 682 185 19 45 chr6 18797204 18797361 -163617881 + MER5B DNA MER1_type 26 178 0 1387 192 17 31 chr6 18797694 18797986 -163617256 - AluJo SINE Alu -24 288 1 1960 115 54 0 chr6 18798158 18798437 -163616805 + AluSx SINE Alu 1 294 -18 2325 86 3 26 chr6 18800540 18800842 -163614400 - AluSc SINE Alu -14 295 1 23 0 0 0 chr6 18801033 18801056 -163614186 + AT_rich Low_complexity Low_complexity 1 23 0 2291 97 10 0 chr6 18801183 18801472 -163613770 + AluSx SINE Alu 1 292 -20 2241 127 15 46 chr6 18801476 18801869 -163613373 + L1MB8 LINE L1 5614 5994 -190 792 134 6 56 chr6 18801948 18802127 -163613115 + L1MB8 LINE L1 6003 6172 -6 2188 138 0 6 chr6 18803230 18803541 -163611701 - AluSx SINE Alu -3 309 1 2001 137 0 19 chr6 18803898 18804205 -163611037 + AluJo SINE Alu 4 304 -8 203 254 16 32 chr6 18804246 18804309 -163610933 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 204 237 51 0 chr6 18804329 18804388 -163610854 - MIR SINE MIR 0 262 201 23 0 0 0 chr6 18805572 18805595 -163609647 + AT_rich Low_complexity Low_complexity 1 23 0 2136 118 7 0 chr6 18805869 18806156 -163609086 + AluSx SINE Alu 1 289 -23 2244 110 3 7 chr6 18806253 18806562 -163608680 + AluSx SINE Alu 1 308 -4 2112 115 28 0 chr6 18806710 18806998 -163608244 + AluSx SINE Alu 1 296 -16 2342 134 3 21 chr6 18807045 18807425 -163607817 + L1PA16 LINE L1 5793 6165 -1 354 173 40 13 chr6 18808059 18808134 -163607108 + L2 LINE L2 3194 3270 -2 1270 122 0 0 chr6 18808217 18808405 -163606837 + L1PB1 LINE L1 5962 6149 -2 584 197 61 14 chr6 18809250 18809397 -163605845 + MER112 DNA MER1_type 96 249 -11 2232 106 0 0 chr6 18809406 18809715 -163605527 + AluSq SINE Alu 1 309 0 35 71 0 0 chr6 18810019 18810089 -163605153 + AT_rich Low_complexity Low_complexity 1 70 0 2055 143 0 13 chr6 18810411 18810725 -163604517 - AluJb SINE Alu -2 310 1 1974 144 0 7 chr6 18811889 18812180 -163603062 - AluJb SINE Alu -6 306 18 2326 77 3 17 chr6 18812920 18813220 -163602022 + AluY SINE Alu 1 296 -15 226 351 8 61 chr6 18813314 18813445 -163601797 - L2 LINE L2 -8 3264 3141 292 220 184 137 chr6 18813557 18813618 -163601624 + MER5A DNA MER1_type 14 71 -118 2241 117 0 0 chr6 18813618 18813925 -163601317 + AluSx SINE Alu 5 311 -1 292 220 184 137 chr6 18813925 18814031 -163601211 + MER5A DNA MER1_type 71 189 0 241 318 157 27 chr6 18814282 18814505 -163600737 - L2 LINE L2 -210 3062 2811 1180 139 0 0 chr6 18814577 18814750 -163600492 - AluSc SINE Alu -6 303 131 570 100 0 0 chr6 18814750 18814820 -163600422 - AluS SINE Alu -242 71 2 202 299 201 50 chr6 18815091 18815573 -163599669 - L2 LINE L2 -908 2406 1852 2224 82 0 7 chr6 18815604 18815884 -163599358 + AluSc SINE Alu 24 301 -8 2427 187 59 17 chr6 18816176 18816635 -163598607 - MER66A LTR ERV1 0 478 1 2253 102 0 28 chr6 18816668 18816990 -163598252 - AluSq SINE Alu 0 313 1 683 126 0 59 chr6 18817163 18817282 -163597960 + AluSg/x SINE Alu 197 308 -4 219 254 0 34 chr6 18817418 18817477 -163597765 - L2 LINE L2 0 3313 3257 209 294 96 44 chr6 18817527 18817663 -163597579 - L2 LINE L2 -235 3037 2895 2197 108 0 3 chr6 18817908 18818205 -163597037 - AluSx SINE Alu -16 296 1 2462 82 3 0 chr6 18818463 18818769 -163596473 + AluSx SINE Alu 1 307 -5 2163 113 6 25 chr6 18819372 18819690 -163595552 - AluSx SINE Alu 0 312 1 1819 126 7 7 chr6 18819827 18820104 -163595138 + Tigger5 DNA MER2_type 2047 2323 0 34 24 0 0 chr6 18820581 18820622 -163594620 + AT_rich Low_complexity Low_complexity 1 41 0 1031 84 30 0 chr6 18820721 18820852 -163594390 + AluJb SINE Alu 1 135 -177 2499 59 0 0 chr6 18821149 18821439 -163593803 + AluY SINE Alu 3 292 -19 204 40 0 0 chr6 18821439 18821464 -163593778 + (TA)n Simple_repeat Simple_repeat 1 25 0 665 68 91 0 chr6 18821693 18821781 -163593461 + FLAM_C SINE Alu 35 130 -13 1507 147 23 30 chr6 18821879 18822144 -163593098 - AluJo SINE Alu -25 287 25 245 343 139 15 chr6 18823682 18823819 -163591423 + L2 LINE L2 3117 3270 -2 1075 102 0 0 chr6 18823922 18824069 -163591173 - AluSg/x SINE Alu -6 304 158 1948 107 28 10 chr6 18824169 18824458 -163590784 + AluSx SINE Alu 19 312 0 2405 78 0 31 chr6 18824469 18824789 -163590453 + AluSp SINE Alu 1 310 -3 2316 103 3 0 chr6 18825251 18825553 -163589689 - AluSc SINE Alu -6 303 1 2425 80 3 0 chr6 18826962 18827261 -163587981 - AluSq SINE Alu -13 300 1 314 247 0 14 chr6 18827498 18827571 -163587671 - MER5B DNA MER1_type -6 172 101 1280 113 0 21 chr6 18827624 18827810 -163587432 - AluSx SINE Alu -130 182 1 1702 142 3 42 chr6 18828863 18829180 -163586062 - AluJb SINE Alu 0 309 4 189 0 0 0 chr6 18829188 18829209 -163586033 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2054 139 0 10 chr6 18829471 18829774 -163585468 + AluSx SINE Alu 1 300 -12 1542 155 7 37 chr6 18829888 18830159 -163585083 + AluJo SINE Alu 34 296 -16 1912 152 0 7 chr6 18831485 18831782 -163583460 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr6 18832130 18832154 -163583088 + AT_rich Low_complexity Low_complexity 1 24 0 2246 81 0 11 chr6 18832161 18832465 -163582777 + AluSx SINE Alu 6 306 0 1797 92 21 50 chr6 18832935 18833018 -163582224 - L1MA4A LINE L1 -4 6299 6215 2129 88 0 0 chr6 18833018 18833279 -163581963 + AluSx SINE Alu 34 294 -18 1797 92 21 50 chr6 18833279 18833476 -163581766 - L1MA4A LINE L1 -88 6215 6027 1251 167 16 32 chr6 18833599 18833851 -163581391 - L1MB3 LINE L1 0 6183 5936 416 275 121 85 chr6 18834974 18835023 -163580219 + L2 LINE L2 2928 2974 -298 2439 67 0 25 chr6 18835023 18835337 -163579905 + AluY SINE Alu 1 306 -5 416 275 121 85 chr6 18835337 18835530 -163579712 + L2 LINE L2 2974 3188 -84 2383 107 0 0 chr6 18835530 18835838 -163579404 + AluSx SINE Alu 1 308 -4 416 275 121 85 chr6 18835838 18835925 -163579317 + L2 LINE L2 3188 3270 -2 22 0 0 0 chr6 18836134 18836156 -163579086 + AT_rich Low_complexity Low_complexity 1 22 0 1970 113 0 48 chr6 18836232 18836542 -163578700 - AluSx SINE Alu -17 295 1 21 0 0 0 chr6 18836766 18836787 -163578455 + AT_rich Low_complexity Low_complexity 1 21 0 186 339 0 0 chr6 18836848 18836907 -163578335 - MIR3 SINE MIR -1 207 149 7896 35 0 3 chr6 18837238 18838329 -163576913 - L1PA5 LINE L1 -3 6151 5057 4570 31 0 0 chr6 18838329 18838852 -163576390 + L1P LINE L1 3951 4473 -1673 544 288 126 44 chr6 18839175 18839247 -163575995 + L1ME LINE L1 4067 4132 -2014 2432 84 0 0 chr6 18839247 18839544 -163575698 + AluY SINE Alu 1 297 -14 544 288 126 44 chr6 18839544 18839773 -163575469 + L1ME LINE L1 4132 4341 -1805 2169 114 7 3 chr6 18839773 18840081 -163575161 + AluY SINE Alu 1 309 -2 544 288 126 44 chr6 18840081 18840500 -163574742 + L1ME LINE L1 4341 4847 -1299 810 254 71 56 chr6 18840512 18840870 -163574372 + L1P4 LINE L1 4918 5269 -897 2179 96 4 4 chr6 18840870 18841151 -163574091 + AluSp SINE Alu 2 282 -31 186 43 0 0 chr6 18841155 18841178 -163574064 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 810 254 71 56 chr6 18841178 18841335 -163573907 + L1P4 LINE L1 5271 5455 -711 578 323 53 8 chr6 18841453 18841719 -163573523 + L1ME LINE L1 5499 5776 -386 821 181 0 75 chr6 18841774 18841958 -163573284 + FRAM SINE Alu 1 171 0 243 0 0 0 chr6 18842082 18842109 -163573133 + (T)n Simple_repeat Simple_repeat 1 27 0 256 376 73 0 chr6 18843709 18843818 -163571424 - MER5A DNA MER1_type -15 174 58 1892 107 65 0 chr6 18844054 18844317 -163570925 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 18844317 18844338 -163570904 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 519 224 0 0 chr6 18844874 18844981 -163570261 + MER5B DNA MER1_type 72 178 0 2242 97 0 3 chr6 18845038 18845336 -163569906 + AluY SINE Alu 1 297 -14 1340 109 0 0 chr6 18845785 18845988 -163569254 - AluJ SINE Alu 0 309 107 787 190 7 0 chr6 18845988 18846125 -163569117 + L1M3f LINE L1 396 533 -4795 756 160 8 0 chr6 18846125 18846244 -163568998 - AluJ SINE Alu -191 121 2 546 129 24 0 chr6 18846770 18846855 -163568387 + MER5A DNA MER1_type 26 112 -77 240 232 21 169 chr6 18846779 18846887 -163568355 - MER5A DNA MER1_type -23 166 82 * 2358 82 3 0 chr6 18846887 18847181 -163568061 - AluSp SINE Alu -18 295 1 240 232 21 169 chr6 18847181 18847214 -163568028 - MER5A DNA MER1_type -107 82 46 207 0 50 50 chr6 18847224 18847264 -163567978 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2082 101 0 14 chr6 18847267 18847554 -163567688 - AluSq SINE Alu -30 283 1 194 260 20 0 chr6 18847556 18847606 -163567636 + MER5A DNA MER1_type 128 178 -11 383 333 56 6 chr6 18847636 18847816 -163567426 + MIR SINE MIR 51 239 -23 2252 140 3 20 chr6 18850055 18850398 -163564844 + MER1B DNA MER1_type 1 337 0 2274 100 0 17 chr6 18850642 18850943 -163564299 + AluSx SINE Alu 1 296 -16 2342 94 0 0 chr6 18850945 18851244 -163563998 + AluY SINE Alu 3 301 -10 240 217 17 50 chr6 18851534 18851594 -163563648 - MIR3 SINE MIR -35 173 116 269 295 119 31 chr6 18851834 18852061 -163563181 + L2 LINE L2 2205 2451 -863 2324 107 0 0 chr6 18852092 18852390 -163562852 + AluSg SINE Alu 1 298 -12 2421 89 0 10 chr6 18852391 18852704 -163562538 + AluSq SINE Alu 1 310 -3 314 297 40 0 chr6 18852711 18852812 -163562430 - L2 LINE L2 -926 2388 2284 1731 112 202 67 chr6 18852812 18853168 -163562074 - MER4A LTR ERV1 0 664 261 562 122 20 20 chr6 18853168 18853266 -163561976 - MER4A LTR ERV1 -566 98 1 17381 96 43 24 chr6 18853277 18855159 -163560083 - MER4A-int LTR ERV1 -5 6593 4642 2296 105 0 0 chr6 18855159 18855453 -163559789 + AluY SINE Alu 1 294 -17 17381 96 43 24 chr6 18855453 18856275 -163558967 - MER4A-int LTR ERV1 -1956 4642 3837 9380 108 145 139 chr6 18856274 18856532 -163558710 - MER4A-int LTR ERV1 -2917 3681 3426 * 2306 86 17 0 chr6 18856532 18856823 -163558419 + AluY SINE Alu 1 296 -15 9380 108 145 139 chr6 18856823 18856994 -163558248 - MER4A-int LTR ERV1 -3172 3426 3258 2025 131 16 22 chr6 18856994 18857307 -163557935 - AluSx SINE Alu -1 311 1 9380 108 145 139 chr6 18857307 18857654 -163557588 - MER4A-int LTR ERV1 -3340 3258 2915 2095 132 0 0 chr6 18857654 18857943 -163557299 + AluSc SINE Alu 1 289 -20 9380 108 145 139 chr6 18857943 18859429 -163555813 - MER4A-int LTR ERV1 -3683 2915 1439 1975 117 40 7 chr6 18859429 18859728 -163555514 + AluSc SINE Alu 1 309 0 9380 108 145 139 chr6 18859728 18860014 -163555228 - MER4A-int LTR ERV1 -5159 1439 1111 327 85 0 0 chr6 18860014 18860061 -163555181 + (CA)n Simple_repeat Simple_repeat 2 48 0 9380 108 145 139 chr6 18860061 18860181 -163555061 - MER4A-int LTR ERV1 -5487 1111 993 336 51 0 0 chr6 18860179 18860218 -163555024 - MER4A-int LTR ERV1 -5712 886 848 * 2834 87 117 26 chr6 18860346 18860788 -163554454 - MER4A-int LTR ERV1 -5790 808 407 2106 111 11 0 chr6 18860788 18861090 -163554152 + AluSx SINE Alu 1 305 0 2834 87 117 26 chr6 18861090 18861283 -163553959 - MER4A-int LTR ERV1 -6191 407 1 1825 118 159 78 chr6 18861285 18861571 -163553671 - MER4A LTR ERV1 0 664 340 2229 91 10 7 chr6 18861571 18861867 -163553375 - AluSx SINE Alu -7 305 9 1825 118 159 78 chr6 18861867 18861952 -163553290 - MER4A LTR ERV1 -324 340 263 613 82 31 21 chr6 18861952 18862049 -163553193 - MER4A LTR ERV1 -566 98 1 2279 98 0 0 chr6 18862484 18862770 -163552472 - AluSg SINE Alu -24 286 1 21 36 0 0 chr6 18862777 18862805 -163552437 + AT_rich Low_complexity Low_complexity 1 28 0 2777 144 58 52 chr6 18862920 18863113 -163552129 + MER4B LTR ERV1 1 191 -419 2235 112 7 0 chr6 18863113 18863418 -163551824 + AluSc SINE Alu 1 307 -2 2777 144 58 52 chr6 18863418 18863795 -163551447 + MER4B LTR ERV1 191 574 -36 356 295 111 16 chr6 18863823 18864013 -163551229 - Charlie7 DNA MER1_type -402 2210 2003 2676 200 115 71 chr6 18865201 18865992 -163549250 - LTR1B LTR ERV1 0 826 1 2392 100 0 0 chr6 18866013 18866323 -163548919 + AluSg SINE Alu 1 310 0 226 274 32 16 chr6 18866339 18866401 -163548841 + MIR SINE MIR 39 101 -107 572 300 55 67 chr6 18866525 18866868 -163548374 + MLT1J2 LTR MaLR 70 408 -42 857 230 24 0 chr6 18866996 18867161 -163548081 + FRAM SINE Alu 1 169 -7 2048 143 0 3 chr6 18867163 18867471 -163547771 + AluSx SINE Alu 2 308 -4 405 0 0 0 chr6 18867717 18867762 -163547480 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1791 122 68 0 chr6 18867764 18868027 -163547215 - AluJb SINE Alu -31 281 1 974 194 0 117 chr6 18868619 18868866 -163546376 - MLT1E1 LTR MaLR 0 624 407 2649 160 78 14 chr6 18868882 18869394 -163545848 - LTR10A LTR ERV1 -64 545 1 255 143 41 0 chr6 18869417 18869466 -163545776 - LTR10B LTR ERV1 -496 51 1 1745 217 27 93 chr6 18869466 18869948 -163545294 - MLT1E1 LTR MaLR -214 424 3 23 0 0 0 chr6 18870478 18870501 -163544741 + AT_rich Low_complexity Low_complexity 1 23 0 260 170 0 0 chr6 18870772 18870819 -163544423 - AluSq SINE Alu -1 301 255 1416 120 10 5 chr6 18870819 18871027 -163544215 - AluSq SINE Alu -104 209 1 30 59 0 0 chr6 18871138 18871189 -163544053 + AT_rich Low_complexity Low_complexity 1 51 0 324 282 40 8 chr6 18871219 18871343 -163543899 - L1M4 LINE L1 -2660 3486 3359 2331 58 41 0 chr6 18871384 18871676 -163543566 - AluY SINE Alu -4 307 4 329 184 0 13 chr6 18871765 18871817 -163543425 + (TA)n Simple_repeat Simple_repeat 2 54 -22 2344 62 0 16 chr6 18871817 18872124 -163543118 - AluY SINE Alu -9 302 1 329 184 0 13 chr6 18872124 18872147 -163543095 + (TA)n Simple_repeat Simple_repeat 54 76 0 5528 120 117 33 chr6 18872235 18873649 -163541593 + pTR5 LTR ERV1 743 2431 -7 242 360 38 11 chr6 18874607 18874793 -163540449 - L1MC/D LINE L1 -2055 5753 5563 23 33 0 0 chr6 18875128 18875158 -163540084 + AT_rich Low_complexity Low_complexity 1 30 0 1685 174 0 20 chr6 18876966 18877265 -163537977 + AluJb SINE Alu 1 293 -19 2177 92 11 0 chr6 18877270 18877554 -163537688 + AluSq SINE Alu 1 287 -26 1141 171 43 0 chr6 18877935 18878146 -163537096 + MLT2B1 LTR ERVL 1 220 -300 366 184 0 0 chr6 18878169 18878245 -163536997 + (CA)n Simple_repeat Simple_repeat 2 77 0 295 122 0 0 chr6 18878245 18878286 -163536956 + MLT2B1 LTR ERVL 367 407 -7 252 347 111 63 chr6 18878613 18878742 -163536500 + L2 LINE L2 2366 2487 -827 805 183 0 0 chr6 18878742 18878873 -163536369 + FLAM_C SINE Alu 1 131 -2 252 347 111 63 chr6 18878873 18879201 -163536041 + L2 LINE L2 2487 2845 -469 1626 185 10 26 chr6 18879311 18879613 -163535629 - AluJo SINE Alu -15 297 1 2528 53 0 3 chr6 18879623 18879926 -163535316 - AluY SINE Alu -9 302 1 244 325 117 75 chr6 18879941 18880181 -163535061 + L2 LINE L2 3005 3254 -18 667 270 17 17 chr6 18880307 18880485 -163534757 + MER5B DNA MER1_type 1 178 0 3560 116 19 106 chr6 18880735 18881008 -163534234 + Tigger4(Zombi) DNA MER2_type 1 296 -2435 1969 143 3 3 chr6 18881008 18881302 -163533940 - AluJo SINE Alu -18 294 1 3560 116 19 106 chr6 18881302 18881732 -163533510 + Tigger4(Zombi) DNA MER2_type 296 762 -1969 2189 100 0 3 chr6 18881732 18882021 -163533221 + AluSx SINE Alu 1 288 -24 3560 116 19 106 chr6 18882021 18882188 -163533054 + Tigger4(Zombi) DNA MER2_type 762 2730 -1 1126 260 126 34 chr6 18882315 18882785 -163532457 - MLT1K LTR MaLR -11 577 65 273 287 32 11 chr6 18883150 18883244 -163531998 - MLT1K LTR MaLR -490 98 3 1576 181 0 0 chr6 18883774 18884022 -163531220 - AluJb SINE Alu -64 248 1 238 254 45 0 chr6 18884023 18884090 -163531152 - L1ME LINE L1 -513 5608 5539 856 183 0 7 chr6 18884115 18884268 -163530974 - MER5A DNA MER1_type 0 189 38 450 233 8 29 chr6 18884406 18884651 -163530591 + CT-rich Low_complexity Low_complexity 1 239 0 1098 91 0 0 chr6 18884754 18884928 -163530314 + AluSg/x SINE Alu 140 313 0 260 188 16 31 chr6 18884985 18885049 -163530193 + MLT1K LTR MaLR 419 481 -107 272 139 0 0 chr6 18885062 18885105 -163530137 + AluSc SINE Alu 252 294 -5 204 202 0 83 chr6 18885171 18885255 -163529987 + T-rich Low_complexity Low_complexity 2 78 0 24 0 0 0 chr6 18885255 18885279 -163529963 + AT_rich Low_complexity Low_complexity 1 24 0 2184 116 0 0 chr6 18885408 18885702 -163529540 - AluSg SINE Alu -16 294 1 201 108 0 0 chr6 18886266 18886303 -163528939 + (TA)n Simple_repeat Simple_repeat 2 38 0 323 243 68 61 chr6 18886365 18886513 -163528729 - L1ME3A LINE L1 -59 6111 5963 832 239 41 21 chr6 18886569 18886812 -163528430 - L1MC5 LINE L1 -425 7536 7289 740 208 86 98 chr6 18886816 18887071 -163528171 - L1MC5 LINE L1 -1000 6961 6710 228 122 0 0 chr6 18887076 18887117 -163528125 + (TA)n Simple_repeat Simple_repeat 1 41 0 693 178 0 0 chr6 18887117 18887224 -163528018 + Tigger3(Golem) DNA MER2_type 2 108 -2921 469 145 0 0 chr6 18887224 18887293 -163527949 - AluJ/FRAM SINE Alu -12 300 232 4673 104 35 24 chr6 18887295 18888038 -163527204 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 342 0 0 0 chr6 18888044 18888082 -163527160 + (TG)n Simple_repeat Simple_repeat 2 39 0 260 252 83 61 chr6 18888107 18888337 -163526905 - HAL1b LINE L1 -1113 235 1 207 304 71 0 chr6 18888478 18888534 -163526708 - L2 LINE L2 -45 3227 3168 1804 171 10 7 chr6 18888839 18889148 -163526094 + AluJb SINE Alu 1 310 -2 3148 130 58 67 chr6 18889164 18889432 -163525810 + MER39B LTR ERV1 1 270 -383 2376 77 6 13 chr6 18889432 18889745 -163525497 + AluSq SINE Alu 1 311 -2 3148 130 58 67 chr6 18889745 18889909 -163525333 + MER39B LTR ERV1 270 434 -219 2580 35 0 0 chr6 18889909 18890198 -163525044 - AluY SINE Alu -22 289 1 3148 130 58 67 chr6 18890198 18890418 -163524824 + MER39B LTR ERV1 434 648 -5 23 0 0 0 chr6 18891894 18891917 -163523325 + GC_rich Low_complexity Low_complexity 1 23 0 1729 133 7 28 chr6 18893056 18893342 -163521900 - AluSx SINE Alu -32 280 1 535 317 29 33 chr6 18894218 18894458 -163520784 - MIR SINE MIR 0 262 24 388 298 64 80 chr6 18894456 18894588 -163520654 + L2 LINE L2 2442 2575 -739 * 1883 148 7 33 chr6 18894588 18894891 -163520351 - AluJo SINE Alu -17 295 1 388 298 64 80 chr6 18894891 18895084 -163520158 + L2 LINE L2 2575 2762 -552 869 142 31 0 chr6 18895089 18895216 -163520026 - FLAM_C SINE Alu -2 131 1 313 200 0 31 chr6 18895284 18895349 -163519893 - AluY SINE Alu -112 189 127 584 316 89 60 chr6 18895350 18895764 -163519478 + L2 LINE L2 2847 3272 0 2219 117 3 10 chr6 18896078 18896385 -163518857 - AluSx SINE Alu -7 305 1 2482 73 0 0 chr6 18897203 18897505 -163517737 - AluY SINE Alu -9 302 1 2567 59 3 0 chr6 18897984 18898289 -163516953 + AluY SINE Alu 1 306 -5 336 269 77 0 chr6 18898329 18898433 -163516809 - MIR SINE MIR 0 262 151 319 258 40 19 chr6 18898538 18898662 -163516580 - MIR SINE MIR -95 167 2 251 305 114 42 chr6 18903669 18903836 -163511406 + MER5A DNA MER1_type 9 187 -2 1107 174 22 6 chr6 18903949 18904181 -163511061 + AluJo SINE Alu 1 278 -34 1611 110 5 0 chr6 18904317 18904535 -163510707 + AluSg SINE Alu 1 219 -91 2273 79 0 17 chr6 18904961 18905253 -163509989 + AluSg SINE Alu 1 287 -23 970 172 37 146 chr6 18905432 18905700 -163509542 - MER8 DNA MER2_type 0 239 1 2043 95 7 14 chr6 18907746 18908054 -163507188 - AluSc SINE Alu 0 306 1 1619 248 100 72 chr6 18908356 18908570 -163506672 + HAL1 LINE L1 204 411 -2096 1790 188 0 7 chr6 18908570 18908879 -163506363 + AluJo SINE Alu 5 311 -1 1619 248 100 72 chr6 18908879 18909568 -163505674 + HAL1 LINE L1 411 1080 -1427 2520 63 0 3 chr6 18909568 18909870 -163505372 - AluY SINE Alu -9 302 2 1619 248 100 72 chr6 18909870 18910528 -163504714 + HAL1 LINE L1 1080 1903 -604 654 128 59 10 chr6 18910538 18910640 -163504602 + U6 snRNA snRNA 1 107 0 5365 141 39 29 chr6 18910640 18910821 -163504421 + L1MA4 LINE L1 4458 4636 -1664 2292 105 7 0 chr6 18910821 18911127 -163504115 + AluSx SINE Alu 1 308 -4 5365 141 39 29 chr6 18911127 18911587 -163503655 + L1MA4 LINE L1 4636 5090 -1210 1231 138 78 23 chr6 18911587 18911805 -163503437 - MER30 DNA MER1_type 0 230 1 5365 141 39 29 chr6 18911805 18912938 -163502304 + L1MA4 LINE L1 5090 6253 -47 24 77 0 0 chr6 18912941 18912993 -163502249 + AT_rich Low_complexity Low_complexity 1 52 0 1546 173 0 58 chr6 18913173 18913485 -163501757 + AluJb SINE Alu 1 294 -18 314 275 117 0 chr6 18913693 18913813 -163501429 + HAL1 LINE L1 2007 2140 -367 2243 108 0 0 chr6 18913854 18914151 -163501091 + AluY SINE Alu 1 297 -14 1035 258 118 3 chr6 18914436 18914816 -163500426 + L1ME3A LINE L1 5527 5950 -220 2217 113 17 0 chr6 18916260 18916561 -163498681 + AluSg SINE Alu 1 306 -4 323 266 84 52 chr6 18917686 18917840 -163497402 - L1M4 LINE L1 -1372 4774 4616 929 194 0 16 chr6 18918493 18918679 -163496563 - AluSg/x SINE Alu -7 303 121 330 266 130 0 chr6 18918686 18918863 -163496379 - HAL1 LINE L1 -904 1603 1404 180 0 0 0 chr6 18919625 18919645 -163495597 + (TAA)n Simple_repeat Simple_repeat 2 21 0 656 296 47 16 chr6 18920741 18920994 -163494248 + L1MC4a LINE L1 5427 5687 -2121 300 268 120 56 chr6 18921000 18921250 -163493992 + L1MC4a LINE L1 5804 6069 -1739 2025 141 7 10 chr6 18921383 18921688 -163493554 + AluSx SINE Alu 1 304 -8 548 140 40 13 chr6 18921689 18921839 -163493403 + GA-rich Low_complexity Low_complexity 3 156 0 525 248 85 57 chr6 18922085 18922331 -163492911 - MER112 DNA MER1_type 0 256 4 1077 180 106 8 chr6 18922362 18922617 -163492625 - L1PB4 LINE L1 0 6156 5877 2301 81 3 3 chr6 18922690 18922987 -163492255 + AluY SINE Alu 1 297 -14 963 125 21 0 chr6 18923162 18923353 -163491889 + AluSg/x SINE Alu 136 329 0 219 206 27 55 chr6 18925348 18925421 -163489821 + L2 LINE L2 2187 2257 -1057 2171 125 0 0 chr6 18925447 18925742 -163489500 - AluSx SINE Alu -17 295 1 1111 134 9 86 chr6 18925863 18926095 -163489147 + MER30 DNA MER1_type 1 214 -16 2584 62 0 0 chr6 18926110 18926414 -163488828 - AluY SINE Alu -7 304 1 1713 181 11 0 chr6 18926422 18926704 -163488538 - AluJb SINE Alu -27 285 1 217 378 35 21 chr6 18926704 18926839 -163488403 + L2 LINE L2 2600 2739 -575 2176 133 0 3 chr6 18927057 18927357 -163487885 + AluSx SINE Alu 1 299 -13 276 261 91 0 chr6 18929838 18929926 -163485316 + MIR3 SINE MIR 64 159 -49 2231 119 0 3 chr6 18930072 18930383 -163484859 - AluSx SINE Alu -1 311 2 21 0 0 0 chr6 18931073 18931094 -163484148 + AT_rich Low_complexity Low_complexity 1 21 0 1453 203 7 21 chr6 18931647 18931928 -163483314 - AluJo SINE Alu -35 277 1 2175 103 0 3 chr6 18932259 18932574 -163482668 + AluSc SINE Alu 1 314 0 2080 105 16 10 chr6 18932576 18932881 -163482361 + AluY SINE Alu 1 307 -4 3603 184 85 5 chr6 18933061 18934184 -163481058 + L1MB5 LINE L1 4960 6166 -8 1937 113 4 0 chr6 18934196 18934462 -163480780 + AluSx SINE Alu 1 267 -45 1903 102 40 40 chr6 18935666 18935809 -163479433 + AluSx SINE Alu 1 143 -169 2147 103 3 10 chr6 18935809 18936110 -163479132 + AluY SINE Alu 1 299 -12 1903 102 40 40 chr6 18936110 18936269 -163478973 + AluSx SINE Alu 142 303 -9 1468 176 14 41 chr6 18936301 18936596 -163478646 - AluJo SINE Alu -13 299 13 2292 78 3 0 chr6 18937217 18937511 -163477731 - AluY SINE Alu -16 295 1 306 182 34 128 chr6 18937551 18937699 -163477543 + MER104 DNA Tc2 6 139 -41 2135 123 0 52 chr6 18937737 18938062 -163477180 - AluSq SINE Alu -5 308 1 288 316 137 0 chr6 18938064 18938254 -163476988 + L1MC4 LINE L1 6789 7004 -1038 445 219 98 101 chr6 18938288 18938635 -163476607 + L1MC4 LINE L1 7573 7918 -124 232 229 0 0 chr6 18938709 18938757 -163476485 + HsTC2 DNA Tc2 1848 1895 -3 1554 181 20 46 chr6 18939209 18939340 -163475902 + AluJo SINE Alu 1 134 -178 2271 103 0 16 chr6 18939340 18939650 -163475592 + AluSx SINE Alu 1 305 -7 1554 181 20 46 chr6 18939650 18939821 -163475421 + AluJo SINE Alu 134 295 -17 346 248 54 74 chr6 18940408 18940557 -163474685 + MIR SINE MIR 12 157 -105 1659 149 54 6 chr6 18940608 18940923 -163474319 + MER44D DNA MER2_type 2 601 -8 560 238 49 11 chr6 18941075 18941260 -163473982 + L1ME2 LINE L1 138 329 -5876 333 259 130 6 chr6 18941329 18941491 -163473751 + L1ME2 LINE L1 449 630 -5575 881 261 60 56 chr6 18941769 18942046 -163473196 + L1ME2 LINE L1 1841 2115 -4100 1565 157 28 24 chr6 18942046 18942333 -163472909 + AluJo SINE Alu 22 309 -3 881 261 60 56 chr6 18942333 18942817 -163472425 + L1ME2 LINE L1 2115 2566 -3649 312 202 0 6 chr6 18942817 18943079 -163472163 + AluJo SINE Alu 1 306 0 656 213 150 50 chr6 18943081 18943462 -163471780 + L1ME2 LINE L1 2576 2994 -3221 * 825 234 95 14 chr6 18943432 18943746 -163471496 + L1ME2 LINE L1 5042 5329 -904 1934 94 4 26 chr6 18943746 18944011 -163471231 + AluSx SINE Alu 1 259 -53 1700 137 4 4 chr6 18944013 18944268 -163470974 + AluSx SINE Alu 38 292 -20 825 234 95 14 chr6 18944268 18944895 -163470347 + L1ME2 LINE L1 5329 6214 -19 328 229 127 93 chr6 18944943 18945148 -163470094 + L1MC4 LINE L1 7829 8040 -2 2252 92 7 0 chr6 18945330 18945625 -163469617 - AluSq SINE Alu -16 297 1 278 200 212 0 chr6 18945824 18945909 -163469333 - MIR SINE MIR -94 168 66 477 102 57 57 chr6 18945935 18946023 -163469219 - MIR SINE MIR -108 154 67 2277 98 0 3 chr6 18946464 18946760 -163468482 - AluSx SINE Alu -17 295 1 2114 124 7 0 chr6 18946928 18947227 -163468015 + AluSx SINE Alu 1 301 -11 831 194 0 12 chr6 18947468 18947628 -163467614 - AluJb SINE Alu -100 212 55 343 229 103 37 chr6 18947638 18947857 -163467385 - LTR45 LTR ERV1 -53 557 325 23 0 0 0 chr6 18948206 18948229 -163467013 + AT_rich Low_complexity Low_complexity 1 23 0 1721 125 22 84 chr6 18948265 18948585 -163466657 + AluSx SINE Alu 1 300 -12 259 95 24 0 chr6 18948586 18948628 -163466614 + LTR45 LTR ERV1 465 507 -18 2186 95 21 6 chr6 18948785 18949123 -163466119 + HSMAR1 DNA Mariner 1 343 -944 1847 132 25 4 chr6 18949123 18949403 -163465839 + AluSx SINE Alu 1 286 -26 234 0 0 0 chr6 18949406 18949432 -163465810 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6355 96 17 28 chr6 18949467 18950433 -163464809 + HSMAR1 DNA Mariner 333 1287 0 2414 100 0 0 chr6 18950467 18950776 -163464466 - AluSc SINE Alu 0 309 1 310 284 63 16 chr6 18951254 18951381 -163463861 + L1M4 LINE L1 2852 2984 -3162 233 228 0 0 chr6 18951554 18951611 -163463631 + (TA)n Simple_repeat Simple_repeat 2 58 0 304 228 11 47 chr6 18951712 18951837 -163463405 + L1ME LINE L1 5539 5659 -503 2005 139 3 0 chr6 18952038 18952332 -163462910 + AluSx SINE Alu 1 295 -17 632 217 16 0 chr6 18953446 18953575 -163461667 + L1MC4a LINE L1 6715 6845 -963 * 1628 211 136 33 chr6 18953565 18954138 -163461104 + L1MC4 LINE L1 7197 7828 -214 261 0 0 0 chr6 18954238 18954267 -163460975 + (CA)n Simple_repeat Simple_repeat 2 30 0 1611 198 0 7 chr6 18954281 18954559 -163460683 - AluJo SINE Alu -26 286 11 238 266 0 13 chr6 18954622 18954701 -163460541 + L1MC4 LINE L1 7925 8002 -40 339 172 0 0 chr6 18954815 18954879 -163460363 + L1MC4 LINE L1 7501 7564 -478 1164 102 6 175 chr6 18954881 18955196 -163460046 + L1MB8 LINE L1 5617 5878 -306 342 127 42 0 chr6 18955331 18955402 -163459840 + L1MB8 LINE L1 6093 6166 -12 253 270 213 14 chr6 18955449 18955660 -163459582 + L1MC5 LINE L1 7530 7782 -179 2288 105 0 0 chr6 18955776 18956071 -163459171 + AluSx SINE Alu 1 295 -17 468 172 269 15 chr6 18956723 18956857 -163458385 - AluJb SINE Alu -11 301 134 1349 178 120 18 chr6 18956857 18957132 -163458110 - AluJo SINE Alu -9 303 1 2048 125 10 0 chr6 18957240 18957537 -163457705 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr6 18958356 18958389 -163456853 + AT_rich Low_complexity Low_complexity 1 33 0 2153 120 0 7 chr6 18958438 18958746 -163456496 + AluY SINE Alu 1 306 -5 2350 93 0 13 chr6 18959075 18959385 -163455857 - AluSx SINE Alu -6 306 1 1877 159 3 0 chr6 18959567 18959862 -163455380 + AluSx SINE Alu 1 296 -16 1445 81 0 0 chr6 18960087 18960260 -163454982 - AluSg/x SINE Alu -15 295 123 2108 123 3 10 chr6 18960817 18961126 -163454116 + AluSx SINE Alu 1 307 -5 2387 234 64 31 chr6 18961355 18961812 -163453430 - L1M4 LINE L1 -1809 4337 3896 2229 108 24 0 chr6 18961812 18962109 -163453133 - AluSx SINE Alu -8 304 1 2387 234 64 31 chr6 18962109 18962508 -163452734 - L1M4 LINE L1 -2250 3896 3453 1588 209 26 68 chr6 18962530 18962730 -163452512 + L1ME1 LINE L1 4400 4607 -1539 2118 135 0 3 chr6 18962730 18963026 -163452216 + AluSx SINE Alu 1 295 -17 1588 209 26 68 chr6 18963026 18963301 -163451941 + L1ME1 LINE L1 4607 4850 -1296 1786 163 10 3 chr6 18963301 18963590 -163451652 + AluJo SINE Alu 1 291 -21 1588 209 26 68 chr6 18963590 18963686 -163451556 + L1ME1 LINE L1 4850 4948 -1198 636 160 0 0 chr6 18963719 18963813 -163451429 + FLAM_C SINE Alu 18 111 -32 2783 180 81 54 chr6 18963853 18964040 -163451202 + L1ME1 LINE L1 4945 5126 -1040 204 40 0 0 chr6 18964040 18964065 -163451177 + (CA)n Simple_repeat Simple_repeat 2 26 0 2783 180 81 54 chr6 18964065 18964092 -163451150 + L1ME1 LINE L1 5126 5151 -1015 1894 108 61 7 chr6 18964092 18964370 -163450872 + AluSg1 SINE Alu 1 293 -16 2783 180 81 54 chr6 18964370 18965347 -163449895 + L1ME1 LINE L1 5151 6166 0 2114 101 3 25 chr6 18965492 18965808 -163449434 + AluSc SINE Alu 1 309 0 534 176 0 29 chr6 18966074 18966176 -163449066 + AluSg/x SINE Alu 198 296 -13 310 293 14 29 chr6 18967179 18967319 -163447923 - L1P LINE L1 -1131 5015 4878 30 0 0 0 chr6 18967483 18967513 -163447729 + AT_rich Low_complexity Low_complexity 1 30 0 241 292 11 11 chr6 18967611 18967700 -163447542 + L1ME LINE L1 173 261 -5944 * 348 324 86 50 chr6 18967675 18967897 -163447345 + L1ME LINE L1 148 377 -6019 380 204 91 8 chr6 18968280 18968412 -163446830 + L1ME LINE L1 666 808 -5397 700 88 20 0 chr6 18968726 18968828 -163446414 - AluSg/x SINE Alu -1 311 208 263 316 25 0 chr6 18968996 18969075 -163446167 - L1M4 LINE L1 -2036 4110 4030 2123 136 10 0 chr6 18969079 18969381 -163445861 + AluSx SINE Alu 1 305 -7 1987 136 7 17 chr6 18969667 18969969 -163445273 + AluJo SINE Alu 1 299 -13 1976 225 73 2 chr6 18970123 18970660 -163444582 + L1MA3 LINE L1 4205 4779 -1367 2942 164 47 15 chr6 18970720 18971249 -163443993 + LTR35 LTR ERV1 73 618 0 1986 224 37 2 chr6 18971254 18971740 -163443502 + L1MA3 LINE L1 4781 5283 -863 2838 134 39 48 chr6 18971741 18972279 -163442963 + L1MA3 LINE L1 5453 5985 -315 280 79 0 0 chr6 18972281 18972319 -163442923 + L1MA3 LINE L1 5953 5990 -315 2239 79 14 3 chr6 18972320 18972610 -163442632 + AluY SINE Alu 11 303 -8 1052 192 5 15 chr6 18972930 18973128 -163442114 + AluJo SINE Alu 1 196 -116 13422 138 35 33 chr6 18973129 18973643 -163441599 - Tigger1 DNA MER2_type -64 2354 1843 2051 134 7 3 chr6 18973643 18973948 -163441294 + AluSg SINE Alu 2 307 -3 13422 138 35 33 chr6 18973948 18974863 -163440379 - Tigger1 DNA MER2_type -575 1843 916 1965 165 95 13 chr6 18974863 18975251 -163439991 + MSTB LTR MaLR 5 424 -2 13422 138 35 33 chr6 18975251 18976140 -163439102 - Tigger1 DNA MER2_type -1502 916 30 21 0 0 0 chr6 18976145 18976166 -163439076 + AT_rich Low_complexity Low_complexity 1 21 0 2606 174 40 55 chr6 18976242 18976275 -163438967 + Tigger3b DNA MER2_type 2 34 -2994 2354 78 0 7 chr6 18976275 18976571 -163438671 + AluY SINE Alu 5 298 -13 2606 174 40 55 chr6 18976571 18976879 -163438363 + Tigger3b DNA MER2_type 34 345 -2683 1709 158 11 11 chr6 18976879 18977152 -163438090 + AluJb SINE Alu 9 281 -31 258 32 0 0 chr6 18977155 18977186 -163438056 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2606 174 40 55 chr6 18977186 18977396 -163437846 + Tigger3b DNA MER2_type 347 551 -2477 2338 61 7 0 chr6 18977396 18977675 -163437567 - AluY SINE Alu -5 306 26 2606 174 40 55 chr6 18977675 18977721 -163437521 + Tigger3b DNA MER2_type 551 596 -635 231 191 36 83 chr6 18977800 18977884 -163437358 + L1MC5 LINE L1 7782 7861 -100 26 30 0 0 chr6 18977884 18977917 -163437325 + GC_rich Low_complexity Low_complexity 1 33 0 2428 82 3 16 chr6 18978838 18979153 -163436089 + AluY SINE Alu 1 311 0 1829 136 0 4 chr6 18980109 18980366 -163434876 + AluSp SINE Alu 1 256 -57 2300 69 42 0 chr6 18980541 18980829 -163434413 - AluSp SINE Alu -13 300 1 491 229 115 25 chr6 18980892 18981049 -163434193 - MIR SINE MIR -14 248 78 1995 62 7 98 chr6 18981088 18981394 -163433848 + AluY SINE Alu 14 291 -20 2192 108 0 33 chr6 18981862 18982169 -163433073 + AluSg SINE Alu 1 297 -13 1906 123 65 10 chr6 18982487 18982779 -163432463 + AluSx SINE Alu 1 308 -4 618 162 138 48 chr6 18982827 18982994 -163432248 - AluJo SINE Alu -16 296 115 971 167 26 0 chr6 18983382 18983538 -163431704 + FRAM SINE Alu 11 170 -6 273 218 263 38 chr6 18983694 18983827 -163431415 + MER5A DNA MER1_type 2 164 -25 306 0 0 0 chr6 18984188 18984222 -163431020 + (CA)n Simple_repeat Simple_repeat 2 35 0 239 276 218 26 chr6 18984254 18984410 -163430832 + LTR33 LTR ERVL 32 217 -304 275 242 48 0 chr6 18984470 18984532 -163430710 + LTR33A LTR ERVL 325 389 -134 1983 97 4 0 chr6 18984609 18984866 -163430376 + AluSx SINE Alu 1 258 -54 23 54 0 0 chr6 18985000 18985037 -163430205 + AT_rich Low_complexity Low_complexity 1 37 0 491 237 86 38 chr6 18985064 18985250 -163429992 + L2 LINE L2 3119 3313 0 2271 107 7 0 chr6 18985381 18985689 -163429553 + AluSx SINE Alu 1 310 -2 2016 127 0 13 chr6 18985699 18985998 -163429244 + AluSg SINE Alu 1 295 -15 373 248 0 12 chr6 18986246 18986375 -163428867 + MER5A DNA MER1_type 1 188 -1 2561 75 0 0 chr6 18986732 18987037 -163428205 + AluY SINE Alu 1 305 -6 409 100 33 0 chr6 18987083 18987143 -163428099 + AluSp/q SINE Alu 234 295 -18 2479 82 0 0 chr6 18987478 18987784 -163427458 + AluY SINE Alu 1 306 -5 2204 109 7 0 chr6 18987795 18988088 -163427154 + AluSx SINE Alu 1 295 -17 2205 103 0 7 chr6 18988408 18988700 -163426542 + AluSx SINE Alu 1 290 -22 1375 144 101 25 chr6 18989317 18989461 -163425781 + AluSx SINE Alu 3 135 -177 2583 60 0 0 chr6 18989461 18989761 -163425481 + AluY SINE Alu 1 300 -11 1375 144 101 25 chr6 18989761 18989893 -163425349 + AluSx SINE Alu 135 300 -12 25 0 0 0 chr6 18990188 18990213 -163425029 + AT_rich Low_complexity Low_complexity 1 25 0 1987 118 49 3 chr6 18990219 18990507 -163424735 + AluSg SINE Alu 1 301 -9 2048 129 7 0 chr6 18990559 18990853 -163424389 + AluSx SINE Alu 1 296 -16 322 98 78 0 chr6 18991139 18991190 -163424052 + LTR8 LTR ERV1 533 587 -104 225 213 415 37 chr6 18991289 18991453 -163423789 - MIR SINE MIR -31 231 6 566 180 197 39 chr6 18991722 18991900 -163423342 + MER58C DNA MER1_type 10 215 0 2206 92 3 20 chr6 18991950 18992244 -163422998 + AluSp SINE Alu 9 297 -16 1992 121 3 14 chr6 18992253 18992386 -163422856 + AluSg SINE Alu 2 135 -175 2339 109 0 0 chr6 18992386 18992689 -163422553 + AluSg1 SINE Alu 1 303 -6 1992 121 3 14 chr6 18992689 18992837 -163422405 + AluSg SINE Alu 135 280 -30 2487 63 0 3 chr6 18993230 18993531 -163421711 + AluY SINE Alu 1 300 -11 1212 127 0 0 chr6 18993533 18993706 -163421536 + AluSp SINE Alu 136 308 -5 2360 78 10 10 chr6 18993922 18994231 -163421011 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr6 18994646 18994674 -163420568 + AT_rich Low_complexity Low_complexity 1 28 0 2609 47 0 0 chr6 18995015 18995312 -163419930 + AluY SINE Alu 1 297 -14 2289 61 14 10 chr6 18995764 18996061 -163419181 - AluYa5 SINE Alu -13 298 1 23 0 0 0 chr6 18997469 18997492 -163417750 + GC_rich Low_complexity Low_complexity 1 23 0 271 350 6 6 chr6 18997757 18997920 -163417322 + (CCG)n Simple_repeat Simple_repeat 3 165 0 425 305 53 0 chr6 18998405 18998556 -163416686 + MIR SINE MIR 50 208 -54 280 331 37 7 chr6 18998753 18998889 -163416353 - MIR3 SINE MIR -28 180 41 2232 117 0 13 chr6 18998968 18999284 -163415958 - AluSx SINE Alu 0 312 1 345 231 77 82 chr6 18999297 18999343 -163415899 + MIR SINE MIR 66 111 -151 2245 73 37 13 chr6 18999343 18999643 -163415599 - AluSp SINE Alu -6 307 1 345 231 77 82 chr6 18999643 18999778 -163415464 + MIR SINE MIR 111 246 -16 2107 102 3 30 chr6 19000880 19001183 -163414059 + AluSx SINE Alu 1 295 -17 237 65 0 0 chr6 19001195 19001226 -163414016 + (TA)n Simple_repeat Simple_repeat 1 31 0 1574 179 66 0 chr6 19001501 19001802 -163413440 + Tigger3(Golem) DNA MER2_type 1 321 -2708 1968 155 3 3 chr6 19001849 19002152 -163413090 + AluJo SINE Alu 1 303 -9 221 0 35 0 chr6 19002165 19002194 -163413048 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2097 127 3 7 chr6 19002800 19003100 -163412142 + AluSx SINE Alu 1 299 -13 2496 66 0 22 chr6 19003155 19003472 -163411770 + AluY SINE Alu 1 310 -1 204 186 248 53 chr6 19003786 19003899 -163411343 + MER5A DNA MER1_type 23 157 -32 2415 51 0 51 chr6 19004766 19005082 -163410160 - AluY SINE Alu -11 300 1 207 0 0 0 chr6 19005852 19005875 -163409367 + (A)n Simple_repeat Simple_repeat 1 23 0 1769 98 4 4 chr6 19006721 19006956 -163408286 + AluSp SINE Alu 65 299 -14 198 0 0 0 chr6 19007014 19007036 -163408206 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1223 124 0 6 chr6 19007053 19007230 -163408012 - AluSg/x SINE Alu -21 291 116 2608 51 0 0 chr6 19008051 19008347 -163406895 - AluY SINE Alu -15 296 1 2598 72 0 0 chr6 19008462 19008769 -163406473 + AluSc SINE Alu 1 307 -2 1362 182 16 23 chr6 19008783 19009041 -163406201 + AluJo SINE Alu 34 289 -23 198 0 0 0 chr6 19009284 19009306 -163405936 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1223 124 0 6 chr6 19009323 19009500 -163405742 - AluSg/x SINE Alu -21 291 116 2350 89 3 0 chr6 19010321 19010614 -163404628 - AluSq SINE Alu -15 298 5 1938 156 3 0 chr6 19010834 19011129 -163404113 - AluSx SINE Alu -16 296 1 1958 141 14 3 chr6 19011131 19011422 -163403820 - AluJo SINE Alu -18 294 1 435 19 0 0 chr6 19011651 19011703 -163403539 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 216 227 118 4 chr6 19011800 19011871 -163403371 - MIR SINE MIR -110 98 34 338 197 103 60 chr6 19012138 19012255 -163402987 + MER53 DNA DNA 3 124 -65 243 0 0 0 chr6 19012299 19012326 -163402916 + (TA)n Simple_repeat Simple_repeat 1 27 0 1226 109 6 11 chr6 19012326 19012501 -163402741 - AluSg/x SINE Alu -5 307 134 2350 85 7 0 chr6 19012501 19012795 -163402447 - AluY SINE Alu -15 296 1 1117 158 84 0 chr6 19013047 19013249 -163401993 - AluJb SINE Alu -9 303 85 1928 109 64 0 chr6 19013293 19013581 -163401661 - AluY SINE Alu 0 305 1 795 132 0 0 chr6 19013936 19014050 -163401192 - 5S rRNA rRNA -1 120 7 2324 97 13 0 chr6 19014515 19014814 -163400428 - AluSx SINE Alu -9 303 1 207 0 0 0 chr6 19014923 19014946 -163400296 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 1800 171 0 17 chr6 19014947 19015234 -163400008 - AluJb SINE Alu -30 282 1 245 292 94 0 chr6 19015238 19015334 -163399908 + MER5A DNA MER1_type 49 153 -36 2092 77 25 32 chr6 19015592 19015898 -163399344 - AluSp SINE Alu 0 304 1 963 198 6 0 chr6 19016021 19016188 -163399054 + FAM SINE Alu 1 168 -7 279 0 0 0 chr6 19016194 19016225 -163399017 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 702 188 8 16 chr6 19016794 19016922 -163398320 + FLAM_C SINE Alu 2 128 -5 27 0 0 0 chr6 19017691 19017718 -163397524 + AT_rich Low_complexity Low_complexity 1 27 0 2161 108 7 13 chr6 19017797 19018103 -163397139 + AluSx SINE Alu 1 304 -8 2725 30 0 0 chr6 19018103 19018402 -163396840 + AluY SINE Alu 1 299 -12 253 302 85 9 chr6 19018402 19018508 -163396734 - MIR SINE MIR -79 129 16 2024 106 8 0 chr6 19018585 19018866 -163396376 + AluSg SINE Alu 1 266 -44 304 254 0 192 chr6 19018948 19019141 -163396101 - MIR SINE MIR -6 256 101 808 148 15 22 chr6 19019142 19019277 -163395965 + AluJo SINE Alu 2 135 -177 2144 67 0 37 chr6 19019351 19019650 -163395592 - AluY SINE Alu -21 290 3 343 301 62 17 chr6 19019983 19020159 -163395083 - L3 LINE CR1 -171 1406 1223 302 321 95 22 chr6 19020191 19020328 -163394914 + HAL1 LINE L1 1 147 -2360 2202 61 4 0 chr6 19020328 19020637 -163394605 - AluY SINE Alu 0 310 1 723 105 0 0 chr6 19020637 19020742 -163394500 - AluSg/x SINE Alu -2 308 204 3975 177 72 60 chr6 19020742 19021975 -163393267 + pTR5 LTR ERV1 57 582 -132 1046 159 24 29 chr6 19021975 19022182 -163393060 - AluSc SINE Alu -103 206 1 254 139 70 0 chr6 19022652 19022695 -163392547 + Tigger7 DNA MER2_type 225 270 -463 582 168 0 21 chr6 19022695 19022790 -163392452 + Tigger7 DNA MER2_type 2399 2491 0 481 79 0 0 chr6 19023011 19023074 -163392168 - U2 snRNA snRNA -125 63 1 812 235 12 0 chr6 19023125 19023287 -163391955 - FRAM SINE Alu -1 165 2 346 269 65 0 chr6 19023394 19023502 -163391740 - HAL1 LINE L1 -918 1589 1475 2158 123 3 0 chr6 19023506 19023814 -163391428 - AluSx SINE Alu -3 309 1 2012 87 52 3 chr6 19023829 19024117 -163391125 - AluY SINE Alu -9 302 1 40 0 0 0 chr6 19024117 19024157 -163391085 + AT_rich Low_complexity Low_complexity 1 40 0 2271 70 0 0 chr6 19024157 19024442 -163390800 - AluY SINE Alu -26 285 1 784 141 7 22 chr6 19024448 19024583 -163390659 - AluSq/x SINE Alu -179 134 2 373 251 29 3 chr6 19024584 19024694 -163390548 - L1MCa LINE L1 -4894 1713 1415 773 263 65 65 chr6 19024708 19025004 -163390238 - L1MCa LINE L1 -4872 1544 1246 1599 167 44 0 chr6 19025004 19025279 -163389963 - AluJo SINE Alu -23 289 3 773 263 65 65 chr6 19025279 19025567 -163389675 - L1MCa LINE L1 -5169 1247 960 248 146 0 0 chr6 19025569 19025610 -163389632 - L1 LINE L1 -3051 4116 4076 1971 107 0 48 chr6 19025611 19025920 -163389322 - AluSq SINE Alu -19 294 1 881 160 82 124 chr6 19025920 19026226 -163389016 - L1 LINE L1 -3267 3900 3608 1056 68 0 0 chr6 19026226 19026358 -163388884 - AluY SINE Alu -179 132 1 547 196 42 65 chr6 19026358 19026453 -163388789 - L1 LINE L1 -3539 3628 3537 2218 103 3 0 chr6 19026453 19026753 -163388489 - AluSp SINE Alu -12 301 1 547 196 42 65 chr6 19026753 19026825 -163388417 - L1 LINE L1 -3630 3537 3465 5984 60 48 8 chr6 19026828 19027656 -163387586 - SVA Other Other -8 1378 518 5511 71 22 56 chr6 19028037 19029039 -163386203 - SVA Other Other -520 866 1 1025 184 12 106 chr6 19029052 19029213 -163386029 - L1 LINE L1 -3694 3473 3299 1800 172 0 0 chr6 19029213 19029510 -163385732 - AluJo SINE Alu -10 302 6 1025 184 12 106 chr6 19029510 19029612 -163385630 - L1 LINE L1 -3868 3299 3243 1771 127 49 7 chr6 19029612 19029896 -163385346 - AluSx SINE Alu -16 296 1 1025 184 12 106 chr6 19029896 19029952 -163385290 - L1 LINE L1 -3924 3243 3183 743 73 0 0 chr6 19029964 19030060 -163385182 - HY3 scRNA scRNA -1 100 5 3219 154 32 15 chr6 19030062 19030679 -163384563 - L1 LINE L1 -3957 3211 2584 246 51 51 0 chr6 19030672 19030711 -163384531 - L1 LINE L1 -4893 2275 2235 * 207 280 85 42 chr6 19031024 19031142 -163384100 - MIR SINE MIR -56 206 84 5209 199 99 98 chr6 19031775 19032070 -163383172 - L1 LINE L1 -4939 2229 1936 518 233 92 0 chr6 19032070 19032190 -163383052 - FLAM_A SINE Alu -11 131 1 1677 115 12 112 chr6 19032194 19032532 -163382710 - AluSq SINE Alu -9 304 1 5209 199 99 98 chr6 19032532 19033735 -163381507 - L1 LINE L1 -5234 1934 661 2100 101 3 3 chr6 19033735 19034041 -163381201 - AluSx SINE Alu -6 306 1 5209 199 99 98 chr6 19034041 19034624 -163380618 - L1 LINE L1 -6507 661 80 732 68 10 4 chr6 19034624 19034830 -163380412 + AluSx SINE Alu 1 290 -19 382 184 158 0 chr6 19034830 19034906 -163380336 - L1 LINE L1 -7080 88 1 1808 114 48 4 chr6 19035049 19035355 -163379887 - AluSq SINE Alu 0 318 1 378 316 43 48 chr6 19035368 19035397 -163379845 + L1M4 LINE L1 4633 4661 -1485 750 187 0 8 chr6 19035397 19035531 -163379711 + FLAM_A SINE Alu 1 133 0 378 316 43 48 chr6 19035531 19035582 -163379660 + L1M4 LINE L1 4661 4711 -1435 1662 141 53 3 chr6 19035582 19035865 -163379377 + AluJb SINE Alu 1 297 -15 378 316 43 48 chr6 19035865 19035970 -163379272 + L1M4 LINE L1 4711 4818 -1328 200 281 49 12 chr6 19036500 19036582 -163378660 - L2 LINE L2 -215 3057 2973 638 137 0 76 chr6 19036637 19036768 -163378474 - FRAM SINE Alu -13 163 43 5746 130 82 99 chr6 19036784 19038372 -163376870 - pTR5 LTR ERV1 0 2438 743 1896 168 0 0 chr6 19038409 19038713 -163376529 + AluJb SINE Alu 1 304 -8 2032 124 0 7 chr6 19038833 19039131 -163376111 - AluSx SINE Alu -16 296 1 388 291 120 6 chr6 19039141 19039299 -163375943 + MIR SINE MIR 31 206 -56 2142 115 0 0 chr6 19039435 19039731 -163375511 + AluSg SINE Alu 1 296 -14 195 268 49 37 chr6 19039850 19039932 -163375310 + L2 LINE L2 2336 2418 -896 685 129 0 102 chr6 19040068 19040215 -163375027 - AluJb SINE Alu 0 312 181 306 0 0 0 chr6 19040276 19040310 -163374932 + (CA)n Simple_repeat Simple_repeat 2 35 0 2266 158 84 17 chr6 19040311 19040338 -163374904 - L1MC3 LINE L1 -173 7612 7588 2170 101 0 0 chr6 19040338 19040634 -163374608 - AluSg1 SINE Alu -13 296 1 2266 158 84 17 chr6 19040634 19041068 -163374174 - L1MC3 LINE L1 -197 7588 7120 2251 54 44 7 chr6 19041081 19041376 -163373866 - AluY SINE Alu -5 306 1 2177 86 14 0 chr6 19041377 19041667 -163373575 - AluSx SINE Alu -18 294 1 1977 129 0 3 chr6 19041733 19042028 -163373214 + AluSx SINE Alu 1 294 -18 2092 96 3 20 chr6 19042289 19042454 -163372788 - AluSx SINE Alu -14 298 132 2396 65 3 0 chr6 19042454 19042762 -163372480 - AluY SINE Alu -1 310 2 198 0 0 0 chr6 19042762 19042784 -163372458 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1957 110 4 7 chr6 19042784 19043065 -163372177 - AluSc SINE Alu -29 280 1 2092 96 3 20 chr6 19043065 19043200 -163372042 - AluSx SINE Alu -177 135 1 2056 84 70 0 chr6 19043276 19043563 -163371679 - AluSg SINE Alu -3 307 1 2082 71 57 4 chr6 19043578 19043859 -163371383 - AluY SINE Alu -15 296 1 531 244 23 8 chr6 19043896 19044027 -163371215 + MIR SINE MIR 81 213 -49 2007 134 3 0 chr6 19044057 19044356 -163370886 - AluSx SINE Alu -12 300 1 204 128 0 0 chr6 19044374 19044394 -163370848 + (A)n Simple_repeat Simple_repeat 1 20 -19 653 191 29 52 chr6 19044394 19044530 -163370712 + FLAM_C SINE Alu 1 133 0 204 128 0 0 chr6 19044530 19044548 -163370694 + (A)n Simple_repeat Simple_repeat 19 39 0 2026 113 3 10 chr6 19044986 19045278 -163369964 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 19045915 19045941 -163369301 + AT_rich Low_complexity Low_complexity 1 26 0 1254 183 3 69 chr6 19046319 19046608 -163368634 + AluJb SINE Alu 1 270 -42 1377 182 45 38 chr6 19046845 19047200 -163368042 + MLT1F1 LTR MaLR 1 391 -151 1191 123 0 0 chr6 19047298 19047468 -163367774 - AluSg/x SINE Alu -9 301 132 2120 129 0 0 chr6 19047468 19047778 -163367464 - AluSx SINE Alu -2 310 1 26 30 0 0 chr6 19047889 19047922 -163367320 + AT_rich Low_complexity Low_complexity 1 33 0 1307 160 71 15 chr6 19047999 19048268 -163366974 - Charlie1b DNA MER1_type -239 284 1 188 322 167 0 chr6 19048269 19048359 -163366883 - MIR3 SINE MIR -49 159 55 2321 57 7 3 chr6 19048934 19049231 -163366011 + AluY SINE Alu 1 298 -13 2216 100 7 3 chr6 19049331 19049640 -163365602 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr6 19049760 19049782 -163365460 + AT_rich Low_complexity Low_complexity 1 22 0 2344 97 0 0 chr6 19049782 19050092 -163365150 - AluSx SINE Alu -2 310 1 2457 46 3 3 chr6 19050161 19050467 -163364775 - AluY SINE Alu -5 306 1 577 231 51 39 chr6 19051505 19051661 -163363581 + MIR SINE MIR 105 262 0 186 43 0 0 chr6 19051784 19051807 -163363435 + (CA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr6 19052944 19052968 -163362274 + AT_rich Low_complexity Low_complexity 1 24 0 749 177 0 8 chr6 19053760 19053884 -163361358 - FLAM_C SINE Alu -19 124 2 2061 108 3 3 chr6 19053892 19054187 -163361055 - AluSp SINE Alu -18 295 1 37 0 0 0 chr6 19054554 19054591 -163360651 + AT_rich Low_complexity Low_complexity 1 37 0 728 191 0 0 chr6 19054592 19054707 -163360535 - FLAM_A SINE Alu -17 116 2 2224 101 3 0 chr6 19054718 19055016 -163360226 - AluSx SINE Alu -13 299 1 1793 132 50 20 chr6 19055707 19056010 -163359232 + AluSx SINE Alu 1 312 0 719 166 46 34 chr6 19056124 19056299 -163358943 + MER104 DNA MER2_type 4 180 0 383 259 26 35 chr6 19058378 19058494 -163356748 - L2 LINE L2 -2 3270 3156 2097 88 7 14 chr6 19058711 19059042 -163356200 - AluSp SINE Alu 0 313 1 191 32 65 0 chr6 19059045 19059076 -163356166 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 852 206 0 7 chr6 19059077 19059223 -163356019 - FRAM SINE Alu -31 145 1 2310 91 0 0 chr6 19059760 19060058 -163355184 - AluSq SINE Alu -14 299 2 303 276 13 20 chr6 19061170 19061268 -163353974 + MIR SINE MIR 68 168 -40 207 0 0 0 chr6 19062866 19062889 -163352353 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr6 19063415 19063445 -163351797 + AT_rich Low_complexity Low_complexity 1 30 0 736 215 0 0 chr6 19063949 19064079 -163351163 + FLAM_C SINE Alu 1 130 -3 896 167 14 45 chr6 19064714 19064936 -163350306 + AluJo SINE Alu 85 299 -13 299 349 31 0 chr6 19066414 19066543 -163348699 + MER94 DNA DNA 2 134 0 265 328 46 23 chr6 19066655 19066786 -163348456 + L2 LINE L2 3174 3307 -6 2183 107 3 0 chr6 19066998 19067296 -163347946 + AluSq SINE Alu 3 301 -12 279 217 0 0 chr6 19067987 19068047 -163347195 - L1M4 LINE L1 -1483 4663 4604 237 173 210 12 chr6 19068152 19068233 -163347009 - L1M4 LINE L1 -2686 3460 3364 554 130 0 0 chr6 19068243 19068320 -163346922 - FLAM_C SINE Alu -30 113 37 21 0 0 0 chr6 19068345 19068366 -163346876 + AT_rich Low_complexity Low_complexity 1 21 0 2181 88 14 0 chr6 19068383 19068679 -163346563 - AluSp SINE Alu -10 303 4 583 271 125 7 chr6 19068822 19069103 -163346139 - L1M4 LINE L1 -3125 3021 2708 2136 97 13 30 chr6 19069888 19070188 -163345054 - AluSx SINE Alu -17 295 1 22 88 0 0 chr6 19070193 19070250 -163344992 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr6 19070327 19070363 -163344879 + AT_rich Low_complexity Low_complexity 1 36 0 1906 140 11 4 chr6 19070365 19070671 -163344571 + AluSg SINE Alu 2 309 0 910 272 8 12 chr6 19071040 19071290 -163343952 + MIR SINE MIR 14 262 0 198 0 0 0 chr6 19071741 19071763 -163343479 + (TA)n Simple_repeat Simple_repeat 2 23 0 2688 51 3 3 chr6 19071763 19072076 -163343166 - AluSp SINE Alu 0 313 1 2436 55 7 23 chr6 19072240 19072550 -163342692 - AluY SINE Alu -6 305 1 201 232 168 32 chr6 19072887 19073012 -163342230 + MIR SINE MIR 32 173 -89 717 208 0 0 chr6 19074002 19074127 -163341115 - FLAM_C SINE Alu -16 127 3 1764 159 10 13 chr6 19074128 19074429 -163340813 - AluJo SINE Alu -8 304 5 2247 115 0 3 chr6 19074435 19074739 -163340503 - AluSc SINE Alu -6 303 1 2145 108 0 0 chr6 19074860 19075172 -163340070 + AluSg1 SINE Alu 1 312 0 535 292 62 19 chr6 19075281 19075541 -163339701 - L3 LINE CR1 -2 1575 1305 257 250 15 0 chr6 19075817 19075885 -163339357 + MER5A DNA MER1_type 50 118 -71 1658 155 23 20 chr6 19076646 19076949 -163338293 + AluJo SINE Alu 5 308 -4 21 0 0 0 chr6 19077024 19077045 -163338197 + AT_rich Low_complexity Low_complexity 1 21 0 1198 166 4 26 chr6 19078220 19078449 -163336793 + AluJo SINE Alu 86 309 -3 266 260 80 67 chr6 19078639 19078789 -163336453 + MIR SINE MIR 74 225 -37 2319 104 0 3 chr6 19078821 19079130 -163336112 + AluSx SINE Alu 1 308 -4 1910 142 7 0 chr6 19079875 19080180 -163335062 + AluJo SINE Alu 1 307 0 2449 75 0 3 chr6 19081233 19081527 -163333715 - AluSg SINE Alu -17 293 1 195 42 0 0 chr6 19082026 19082050 -163333192 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 347 49 0 0 chr6 19082050 19082091 -163333151 - LTR8 LTR ERV1 -104 587 547 1691 181 0 10 chr6 19082637 19082935 -163332307 + AluJo SINE Alu 14 308 -4 191 303 103 62 chr6 19083056 19083201 -163332041 - MIR3 SINE MIR -13 195 45 2190 110 3 7 chr6 19084124 19084425 -163330817 + AluSx SINE Alu 2 301 -11 2143 112 20 3 chr6 19084428 19084722 -163330520 + AluSg SINE Alu 3 301 -9 326 235 82 71 chr6 19084873 19085043 -163330199 - MIR3 SINE MIR -28 180 9 1949 139 7 7 chr6 19085591 19085886 -163329356 - AluSx SINE Alu -17 295 1 1856 175 3 10 chr6 19086135 19086443 -163328799 + AluJb SINE Alu 1 306 -6 23 0 0 0 chr6 19086557 19086580 -163328662 + AT_rich Low_complexity Low_complexity 1 23 0 303 267 0 40 chr6 19087267 19087368 -163327874 - MIR SINE MIR 0 262 166 2005 197 100 30 chr6 19087379 19087805 -163327437 - L1ME3A LINE L1 0 6170 5687 2232 96 0 45 chr6 19087805 19088119 -163327123 + AluSx SINE Alu 1 300 -12 2005 197 100 30 chr6 19088119 19088235 -163327007 - L1ME3A LINE L1 -483 5687 5581 999 228 75 21 chr6 19088239 19088572 -163326670 - L1ME3A LINE L1 -925 5221 4871 345 265 118 0 chr6 19088577 19088679 -163326563 - MIR SINE MIR -99 163 50 758 109 0 0 chr6 19088694 19088804 -163326438 - AluSg SINE Alu 0 309 200 71 21 0 10 chr6 19088804 19088857 -163326385 + AT_rich Low_complexity Low_complexity 1 54 -41 1477 86 16 0 chr6 19088857 19089044 -163326198 - AluSg SINE Alu -120 190 1 71 21 0 10 chr6 19089044 19089086 -163326156 + AT_rich Low_complexity Low_complexity 54 95 0 334 308 91 66 chr6 19089465 19089530 -163325712 - MIR3 SINE MIR -1 207 145 2499 73 0 0 chr6 19089530 19089833 -163325409 - AluY SINE Alu -8 303 1 334 308 91 66 chr6 19089833 19089965 -163325277 - MIR3 SINE MIR -63 145 5 1805 152 14 20 chr6 19090122 19090418 -163324824 + AluJo SINE Alu 5 298 -14 307 304 170 13 chr6 19092628 19092940 -163322302 - L3 LINE CR1 -4 1573 1213 2154 127 0 10 chr6 19092942 19093108 -163322134 - AluSg SINE Alu -13 297 134 2345 98 0 0 chr6 19093108 19093403 -163321839 - AluSg SINE Alu -15 295 1 2154 127 0 10 chr6 19093403 19093536 -163321706 - AluSg SINE Alu -176 134 1 1980 106 10 44 chr6 19093714 19094045 -163321197 + AluSx SINE Alu 1 321 0 320 295 62 8 chr6 19094110 19094239 -163321003 - L2 LINE L2 0 3313 3178 2555 40 7 0 chr6 19094798 19095094 -163320148 - AluSp SINE Alu -15 298 1 1053 174 0 87 chr6 19095254 19095418 -163319824 - AluJb SINE Alu -19 293 116 212 77 26 0 chr6 19095418 19095457 -163319785 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2182 100 0 7 chr6 19095457 19095738 -163319504 - AluSg SINE Alu -31 279 1 1053 174 0 87 chr6 19095738 19095814 -163319428 - AluJb SINE Alu -194 118 73 2438 54 0 0 chr6 19096375 19096679 -163318563 + AluY SINE Alu 1 304 0 195 42 0 0 chr6 19096799 19096823 -163318419 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 19097064 19097087 -163318155 + AT_rich Low_complexity Low_complexity 1 23 0 1229 105 28 22 chr6 19097165 19097346 -163317896 + AluSg/x SINE Alu 131 312 0 342 0 0 0 chr6 19097875 19097913 -163317329 + (TG)n Simple_repeat Simple_repeat 2 39 0 587 255 112 66 chr6 19098162 19098427 -163316815 - L1ME4a LINE L1 -3 6118 5867 1787 158 0 42 chr6 19098427 19098737 -163316505 - AluJo SINE Alu -15 297 1 587 255 112 66 chr6 19098737 19098953 -163316289 - L1ME4a LINE L1 -254 5867 5615 2247 101 7 0 chr6 19099102 19099388 -163315854 + AluSx SINE Alu 1 288 -24 4795 61 20 16 chr6 19099395 19100425 -163314817 + MER11A LTR ERVK 1 1266 0 2027 136 4 0 chr6 19100609 19100918 -163314324 + AluSx SINE Alu 1 310 0 331 331 46 20 chr6 19102052 19102203 -163313039 + L2 LINE L2 3117 3271 -1 905 119 0 15 chr6 19102450 19102584 -163312658 + FLAM_C SINE Alu 2 133 0 3807 115 6 9 chr6 19102970 19103499 -163311743 - MER1A DNA MER1_type 0 527 1 300 269 127 22 chr6 19103802 19103936 -163311306 - L2 LINE L2 -16 3297 3150 270 176 0 0 chr6 19104303 19104354 -163310888 + CT-rich Low_complexity Low_complexity 2 52 0 980 207 0 0 chr6 19104356 19104530 -163310712 - FAM SINE Alu -1 174 1 4937 144 17 6 chr6 19104692 19105512 -163309730 - L1PA15 LINE L1 -9 6156 5328 2134 104 0 43 chr6 19105707 19106006 -163309236 + AluSq SINE Alu 6 291 -22 402 250 188 21 chr6 19106251 19106443 -163308799 + MIR SINE MIR 28 251 -11 2565 60 3 0 chr6 19106453 19106755 -163308487 - AluY SINE Alu -8 303 1 2357 88 7 0 chr6 19106755 19107051 -163308191 - AluSg SINE Alu -11 299 1 241 313 125 0 chr6 19107118 19107246 -163307996 + MIR SINE MIR 48 191 -71 6978 103 20 10 chr6 19107341 19108338 -163306904 - LTR13 LTR ERVK 0 1007 1 2231 93 3 35 chr6 19108409 19108722 -163306520 - AluSq SINE Alu -10 303 1 1412 156 5 0 chr6 19108742 19108954 -163306288 - AluJo SINE Alu -46 266 54 876 154 0 0 chr6 19108991 19109121 -163306121 - FLAM_C SINE Alu -2 131 2 459 314 58 6 chr6 19111120 19111292 -163303950 - MIR SINE MIR -45 217 37 2071 54 0 0 chr6 19111503 19111743 -163303499 - AluY SINE Alu -11 300 61 2221 120 7 0 chr6 19111786 19112085 -163303157 + AluSx SINE Alu 1 301 -11 881 139 0 0 chr6 19113542 19113664 -163301578 - FLAM_C SINE Alu -20 123 2 324 0 0 0 chr6 19114057 19114093 -163301149 + (TG)n Simple_repeat Simple_repeat 2 37 0 2003 152 0 10 chr6 19114545 19114847 -163300395 - AluSx SINE Alu -13 299 1 2095 95 41 24 chr6 19115542 19115836 -163299406 - AluSq SINE Alu -14 299 1 185 254 14 0 chr6 19115899 19115970 -163299272 + CT-rich Low_complexity Low_complexity 2 73 0 2027 162 0 0 chr6 19115970 19116272 -163298970 - AluSx SINE Alu -10 302 1 978 127 0 0 chr6 19116272 19116406 -163298836 - AluJo SINE Alu -177 135 2 2074 125 17 3 chr6 19116418 19116713 -163298529 - AluSx SINE Alu -13 299 1 2447 75 0 7 chr6 19116982 19117290 -163297952 + AluY SINE Alu 1 306 -5 987 239 76 38 chr6 19118687 19119084 -163296158 + L1MC5 LINE L1 7084 7495 -466 781 209 50 34 chr6 19119117 19119414 -163295828 + L1MC5 LINE L1 7478 7779 -182 1033 124 7 0 chr6 19119422 19119598 -163295644 + AluSg/x SINE Alu 136 312 0 1815 157 3 13 chr6 19119602 19119901 -163295341 - AluJb SINE Alu -16 296 1 401 206 22 73 chr6 19119904 19120020 -163295222 + L1MC5 LINE L1 7779 7889 -72 1763 170 0 29 chr6 19120020 19120326 -163294916 - AluJo SINE Alu -15 297 1 401 206 22 73 chr6 19120326 19120345 -163294897 + L1MC5 LINE L1 7889 7907 -54 339 240 48 75 chr6 19121160 19121306 -163293936 + MIR SINE MIR 79 220 -42 2004 111 7 4 chr6 19121457 19121736 -163293506 - AluSx SINE Alu -17 295 16 832 233 85 5 chr6 19121737 19121960 -163293282 - Charlie1 DNA MER1_type -2519 242 2 889 249 38 21 chr6 19122658 19122895 -163292347 + Charlie1 DNA MER1_type 2 242 -2519 621 209 29 14 chr6 19122876 19123015 -163292227 + Charlie1 DNA MER1_type 2620 2760 -1 * 263 312 70 96 chr6 19123865 19124179 -163291063 - L2 LINE L2 -10 3262 2957 204 40 0 0 chr6 19124322 19124347 -163290895 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 590 246 35 53 chr6 19124351 19124579 -163290663 - L2 LINE L2 -17 3296 3073 1803 122 0 4 chr6 19124897 19125144 -163290098 + AluSx SINE Alu 39 284 -28 252 77 0 0 chr6 19125147 19125186 -163290056 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2212 108 3 13 chr6 19125234 19125548 -163289694 + AluSx SINE Alu 1 311 -1 1773 163 3 13 chr6 19125717 19126024 -163289218 + AluJb SINE Alu 1 304 -8 2346 100 0 0 chr6 19126078 19126378 -163288864 + AluSx SINE Alu 1 300 -12 1764 127 48 60 chr6 19127416 19127730 -163287512 + AluSg SINE Alu 1 310 0 311 203 14 0 chr6 19128032 19128101 -163287141 - MIR SINE MIR 0 262 193 203 297 68 0 chr6 19128293 19128367 -163286875 + MIR SINE MIR 182 260 -2 769 95 0 9 chr6 19129051 19129156 -163286086 - MSTA LTR MaLR 0 428 325 * 843 96 178 0 chr6 19129155 19129290 -163285952 - MSTA LTR MaLR -269 159 1 2106 109 7 17 chr6 19130184 19130486 -163284756 + AluSx SINE Alu 11 309 -3 2282 77 3 27 chr6 19130539 19130839 -163284403 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr6 19131138 19131161 -163284081 + AT_rich Low_complexity Low_complexity 1 23 0 1238 194 10 68 chr6 19131161 19131315 -163283927 + L1PB4 LINE L1 5873 6004 -152 2197 117 0 16 chr6 19131315 19131624 -163283618 - AluSx SINE Alu -8 304 1 1238 194 10 68 chr6 19131624 19131763 -163283479 + L1PB4 LINE L1 6004 6149 -7 1302 152 11 42 chr6 19131803 19132066 -163283176 + L1MB8 LINE L1 5648 5902 -282 2164 164 40 5 chr6 19132093 19132496 -163282746 + MLT1C LTR MaLR 51 467 0 1297 156 76 15 chr6 19132497 19132760 -163282482 + L1MB8 LINE L1 5900 6178 0 1077 208 196 43 chr6 19133310 19133578 -163281664 + MER34C LTR ERV1 81 307 -278 1784 161 55 0 chr6 19133578 19133869 -163281373 - AluJb SINE Alu -5 307 1 1077 208 196 43 chr6 19133869 19134038 -163281204 + MER34C LTR ERV1 307 585 0 306 0 0 0 chr6 19134448 19134505 -163280737 + (TG)n Simple_repeat Simple_repeat 1 91 0 306 0 0 0 chr6 19134505 19134539 -163280703 + (TG)n Simple_repeat Simple_repeat 2 35 0 1994 142 0 7 chr6 19134559 19134855 -163280387 - AluJo SINE Alu -18 294 1 326 272 11 29 chr6 19135844 19135979 -163279263 + MLT1J LTR MaLR 99 294 -310 2348 103 3 0 chr6 19136268 19136579 -163278663 + AluSx SINE Alu 1 312 0 383 269 131 7 chr6 19136941 19137086 -163278156 + MER103 DNA DNA 1 163 -3 2284 112 56 36 chr6 19137467 19137824 -163277418 - THE1B LTR MaLR 0 364 1 216 0 0 0 chr6 19138546 19138570 -163276672 + (T)n Simple_repeat Simple_repeat 1 24 0 1318 141 0 0 chr6 19138576 19138760 -163276482 - AluSq SINE Alu -129 184 1 221 172 17 52 chr6 19138795 19138853 -163276389 + MIR SINE MIR 99 154 -108 865 170 0 15 chr6 19138990 19139125 -163276117 + FLAM_C SINE Alu 1 133 0 475 259 136 34 chr6 19139370 19139606 -163275636 + MIR SINE MIR 3 262 0 358 236 94 0 chr6 19140215 19140321 -163274921 - MIR SINE MIR -1 261 146 2277 90 3 3 chr6 19140326 19140616 -163274626 - AluSq SINE Alu -23 290 1 2784 95 31 0 chr6 19140619 19141008 -163274234 - L1MA5 LINE L1 0 6300 5900 1358 140 5 0 chr6 19141063 19141263 -163273979 - AluSg/x SINE Alu -5 307 107 759 184 0 0 chr6 19141293 19141407 -163273835 - AluJb SINE Alu -193 119 6 1867 140 61 0 chr6 19141429 19141707 -163273535 - AluSx SINE Alu -17 295 1 797 199 0 0 chr6 19142494 19142630 -163272612 - FLAM_C SINE Alu -6 137 2 250 237 114 9 chr6 19143338 19143452 -163271790 + L2 LINE L2 3183 3308 -5 * 350 238 61 110 chr6 19143401 19143565 -163271677 - MIR SINE MIR -11 197 35 1741 182 7 3 chr6 19144932 19145223 -163270019 - AluJb SINE Alu -20 292 1 258 279 61 54 chr6 19145637 19145784 -163269458 - MIR SINE MIR -36 226 79 765 273 82 24 chr6 19145834 19146271 -163268971 + L1ME4a LINE L1 5479 5950 -220 225 0 0 0 chr6 19146400 19146425 -163268817 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 348 174 80 123 chr6 19146626 19146659 -163268583 + L1ME4a LINE L1 5982 6015 -106 2038 134 3 0 chr6 19146659 19146942 -163268300 - AluSx SINE Alu -28 284 1 348 174 80 123 chr6 19146942 19147046 -163268196 + L1ME4a LINE L1 6015 6113 -8 2192 128 10 0 chr6 19147051 19147357 -163267885 - AluSx SINE Alu -3 309 1 372 282 53 23 chr6 19147425 19147556 -163267686 + MER5B DNA MER1_type 31 165 -13 1632 164 11 0 chr6 19148252 19148515 -163266727 - AluJo SINE Alu -46 266 1 234 325 58 33 chr6 19148965 19149085 -163266157 + L2 LINE L2 3139 3261 -11 250 324 216 0 chr6 19149443 19149554 -163265688 + L2 LINE L2 3138 3272 0 404 276 91 67 chr6 19149733 19149752 -163265490 + L1ME4a LINE L1 5433 5450 -671 1871 132 80 47 chr6 19149752 19150115 -163265127 + THE1C LTR MaLR 1 375 0 404 276 91 67 chr6 19150115 19150586 -163264656 + L1ME4a LINE L1 5450 5937 -184 393 117 0 0 chr6 19150586 19150646 -163264596 + (TG)n Simple_repeat Simple_repeat 1 60 0 404 276 91 67 chr6 19150646 19150705 -163264537 + L1ME4a LINE L1 5937 5993 -128 845 165 0 0 chr6 19151825 19151958 -163263284 + FLAM_C SINE Alu 1 133 -10 23 0 0 0 chr6 19152120 19152143 -163263099 + AT_rich Low_complexity Low_complexity 1 23 0 2083 92 4 4 chr6 19152143 19152416 -163262826 - AluSg SINE Alu -14 296 24 346 323 81 0 chr6 19152425 19152549 -163262693 - MIR SINE MIR -71 191 58 2196 117 7 0 chr6 19152692 19152991 -163262251 - AluSx SINE Alu -11 301 1 444 75 0 0 chr6 19153192 19153245 -163261997 + Alu SINE Alu 243 295 -15 364 266 56 28 chr6 19153831 19153974 -163261268 - L1ME4a LINE L1 -256 5865 5719 365 345 83 31 chr6 19154158 19154509 -163260733 - L1ME4a LINE L1 -748 5398 5030 826 220 6 0 chr6 19154509 19154677 -163260565 - FRAM SINE Alu 0 176 8 431 310 136 0 chr6 19154695 19154879 -163260363 + MIR SINE MIR 53 261 -1 1323 165 88 25 chr6 19155025 19155171 -163260071 + AluJo SINE Alu 1 136 -176 2242 95 0 0 chr6 19155171 19155489 -163259753 + AluY SINE Alu 1 318 0 1323 165 88 25 chr6 19155489 19155626 -163259616 + AluJo SINE Alu 136 303 -9 223 27 27 27 chr6 19156291 19156328 -163258914 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1516 170 3 42 chr6 19156996 19157279 -163257963 - AluJo SINE Alu -18 294 23 421 288 8 0 chr6 19159024 19159142 -163256100 + MIR SINE MIR 108 226 -36 483 87 0 0 chr6 19159333 19159402 -163255840 + (TA)n Simple_repeat Simple_repeat 1 69 0 602 242 258 5 chr6 19159974 19160172 -163255070 - MIR SINE MIR -3 259 12 2247 80 50 7 chr6 19161225 19161524 -163253718 + AluSx SINE Alu 1 312 0 411 217 96 17 chr6 19161670 19161785 -163253457 - MIR3 SINE MIR -23 185 62 777 248 27 31 chr6 19161893 19162115 -163253127 - MIR SINE MIR -29 233 13 419 284 86 46 chr6 19163394 19163587 -163251655 - MIR SINE MIR -59 203 8 693 171 0 0 chr6 19163646 19163763 -163251479 - L1MA8 LINE L1 -12 6279 6163 1526 152 4 0 chr6 19164902 19165146 -163250096 + L1MA8 LINE L1 6044 6288 -3 1993 132 28 0 chr6 19165149 19165438 -163249804 - AluSx SINE Alu -13 299 3 190 359 97 19 chr6 19165649 19165752 -163249490 - MIR SINE MIR -127 135 25 1389 181 57 37 chr6 19166097 19166396 -163248846 - AluJo SINE Alu -7 305 1 225 0 0 0 chr6 19166768 19166793 -163248449 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1160 97 0 34 chr6 19166935 19167111 -163248131 - AluSg/x SINE Alu -12 298 129 4584 122 17 3 chr6 19167122 19167482 -163247760 - L1PB1 LINE L1 0 6151 5777 369 62 0 0 chr6 19167482 19167530 -163247712 + (CA)n Simple_repeat Simple_repeat 1 48 0 4584 122 17 3 chr6 19167530 19167819 -163247423 - L1PB1 LINE L1 -374 5777 5493 2391 113 0 0 chr6 19167948 19168259 -163246983 - AluSx SINE Alu -1 311 1 230 179 22 187 chr6 19168415 19168549 -163246693 - MER103 DNA DNA -42 124 13 306 0 0 0 chr6 19169128 19169162 -163246080 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 1900 144 18 0 chr6 19169162 19169439 -163245803 - AluJb SINE Alu -30 282 1 487 302 62 26 chr6 19169926 19170118 -163245124 - L3b LINE CR1 -31 1552 1354 210 118 0 0 chr6 19170152 19170186 -163245056 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 347 202 223 0 chr6 19170440 19170534 -163244708 - L2 LINE L2 0 3313 3199 350 247 31 0 chr6 19170711 19170808 -163244434 - L2 LINE L2 -315 2998 2899 838 156 14 14 chr6 19170941 19171082 -163244160 - FLAM_C SINE Alu 0 143 3 285 309 118 37 chr6 19171722 19171858 -163243384 + L2 LINE L2 3125 3271 -1 210 291 0 76 chr6 19171999 19172078 -163243164 + L3 LINE CR1 1501 1573 -4 1715 141 46 33 chr6 19172454 19172760 -163242482 - AluJo SINE Alu -2 310 1 2353 98 0 3 chr6 19172849 19173155 -163242087 + AluSx SINE Alu 1 305 -7 1183 173 122 43 chr6 19173155 19173410 -163241832 - AluJo SINE Alu -37 275 1 1728 114 4 12 chr6 19173962 19174208 -163241034 + AluSc SINE Alu 44 287 -22 2135 130 3 0 chr6 19174219 19174518 -163240724 + AluSx SINE Alu 1 300 -12 2047 136 7 0 chr6 19175071 19175366 -163239876 - AluSx SINE Alu -15 297 1 207 189 0 0 chr6 19175434 19175471 -163239771 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1704 176 51 0 chr6 19175583 19175879 -163239363 + AluJo SINE Alu 2 312 0 1064 198 0 0 chr6 19176275 19176442 -163238800 + FAM SINE Alu 1 167 -8 223 279 0 0 chr6 19176883 19176926 -163238316 - MIR SINE MIR -20 242 200 751 135 0 0 chr6 19179219 19179323 -163235919 + AluSp/q SINE Alu 196 299 -14 1009 282 50 12 chr6 19179509 19179873 -163235369 + MLT1I LTR MaLR 50 395 -14 2229 92 0 39 chr6 19180205 19180510 -163234732 - AluSq SINE Alu -20 293 1 471 201 165 10 chr6 19180966 19181046 -163234196 - MER33 DNA MER1_type -2261 363 297 2135 138 0 3 chr6 19181046 19181350 -163233892 + AluSx SINE Alu 1 303 -9 471 201 165 10 chr6 19181350 19181554 -163233688 - MER33 DNA MER1_type -2327 297 1 400 187 13 0 chr6 19182158 19182233 -163233009 + MER2 DNA MER2_type 1 76 -269 680 121 91 0 chr6 19182377 19182476 -163232766 + AluSp SINE Alu 2 109 -204 1529 108 5 0 chr6 19182507 19182711 -163232531 + AluSp SINE Alu 97 301 -12 1683 166 7 32 chr6 19183129 19183295 -163231947 - AluJo SINE Alu -12 300 144 252 0 0 0 chr6 19183295 19183323 -163231919 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1683 166 7 32 chr6 19183323 19183464 -163231778 - AluJo SINE Alu -168 144 1 1481 135 31 58 chr6 19184020 19184280 -163230962 + AluJo SINE Alu 41 293 -19 2829 222 76 7 chr6 19185002 19185688 -163229554 + MER21B LTR ERV1 79 811 -52 1203 245 109 60 chr6 19185825 19186337 -163228905 - L1M4 LINE L1 -1681 4465 3979 2379 97 0 0 chr6 19186337 19186637 -163228605 - AluSg SINE Alu -5 305 6 1565 155 79 7 chr6 19186645 19186922 -163228320 - AluJo SINE Alu -15 297 1 1203 245 109 60 chr6 19186922 19186997 -163228245 - L1M4 LINE L1 -2173 3973 3840 1537 157 53 53 chr6 19187006 19187343 -163227899 - L1MC2 LINE L1 -17 6327 5991 385 291 92 72 chr6 19187530 19188029 -163227213 - L1MEd LINE L1 -5130 989 481 307 315 45 0 chr6 19188304 19188415 -163226827 - L1MEd LINE L1 -5954 165 50 1518 191 0 8 chr6 19188499 19188740 -163226502 + MER8 DNA MER2_type 1 239 0 385 283 83 0 chr6 19190324 19190444 -163224798 + MIR SINE MIR 57 186 -76 41 48 0 0 chr6 19191035 19191097 -163224145 + AT_rich Low_complexity Low_complexity 1 62 0 1649 190 30 3 chr6 19191337 19191632 -163223610 - AluJo SINE Alu -9 303 1 221 284 0 0 chr6 19193161 19193249 -163221993 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 2536 62 0 13 chr6 19193301 19193609 -163221633 + AluY SINE Alu 1 304 -7 1734 155 11 33 chr6 19193931 19194264 -163220978 + MER93a LTR ERV1 29 402 0 1101 141 0 18 chr6 19194344 19194514 -163220728 + AluSg/x SINE Alu 129 295 -17 476 239 18 61 chr6 19195667 19195830 -163219412 + MER103 DNA DNA 11 166 0 1682 179 0 52 chr6 19196363 19196688 -163218554 + AluJb SINE Alu 2 309 -3 2366 110 0 0 chr6 19196690 19197000 -163218242 + AluSx SINE Alu 1 310 -2 1732 111 0 21 chr6 19197519 19197754 -163217488 - MER30 DNA MER1_type 0 230 1 234 277 96 48 chr6 19197772 19197938 -163217304 - L2 LINE L2 -10 3303 3130 203 355 22 36 chr6 19198126 19198264 -163216978 - L2 LINE L2 -211 3061 2926 223 200 15 15 chr6 19198869 19198934 -163216308 + CT-rich Low_complexity Low_complexity 4 68 0 1832 181 3 13 chr6 19198942 19199257 -163215985 - AluJo SINE Alu 0 312 1 599 300 36 47 chr6 19199580 19199833 -163215409 - MIR SINE MIR -2 260 11 1760 172 7 14 chr6 19200822 19201118 -163214124 + AluJo SINE Alu 1 294 -18 427 260 155 27 chr6 19201378 19201597 -163213645 + MIR SINE MIR 8 254 -8 2402 91 3 0 chr6 19201758 19202065 -163213177 + AluSx SINE Alu 1 308 -4 1995 120 39 0 chr6 19202117 19202400 -163212842 + AluSx SINE Alu 1 294 -18 2422 80 0 3 chr6 19203256 19203567 -163211675 - AluY SINE Alu -1 310 1 2775 87 19 46 chr6 19204059 19204273 -163210969 + L1MA2 LINE L1 5900 6099 -205 1907 133 7 3 chr6 19204273 19204559 -163210683 - AluSx SINE Alu -16 296 10 2775 87 19 46 chr6 19204559 19204760 -163210482 + L1MA2 LINE L1 6099 6304 0 843 146 15 15 chr6 19205452 19205589 -163209653 - AluJo SINE Alu -175 137 1 180 125 0 0 chr6 19205591 19205623 -163209619 + (TA)n Simple_repeat Simple_repeat 2 33 0 370 169 78 0 chr6 19206552 19206629 -163208613 + MER5C DNA MER1_type 240 322 -2 25 31 0 0 chr6 19206879 19206911 -163208331 + AT_rich Low_complexity Low_complexity 1 32 0 531 224 194 18 chr6 19207744 19207914 -163207328 + MIR SINE MIR 20 219 -43 1490 158 97 0 chr6 19208184 19208483 -163206759 + AluJb SINE Alu 1 324 0 217 238 129 61 chr6 19209700 19209737 -163205505 - MIR SINE MIR -6 256 223 2277 117 0 0 chr6 19209737 19210045 -163205197 - AluSx SINE Alu -4 308 1 217 238 129 61 chr6 19210045 19210154 -163205088 - MIR SINE MIR -39 223 100 181 326 81 58 chr6 19210223 19210395 -163204847 + L2 LINE L2 2682 2857 -457 217 304 71 0 chr6 19210742 19210798 -163204444 + L2 LINE L2 3213 3272 0 521 279 99 68 chr6 19211169 19211552 -163203690 + L2 LINE L2 2918 3312 -1 201 108 0 0 chr6 19211731 19211768 -163203474 + (CACAT)n Simple_repeat Simple_repeat 3 39 0 2268 103 0 0 chr6 19213096 19213396 -163201846 + AluSx SINE Alu 1 300 -12 383 282 8 8 chr6 19213652 19213783 -163201459 - MER103 DNA DNA -1 165 35 532 251 21 16 chr6 19214882 19215073 -163200169 + L1ME3A LINE L1 5760 5951 -219 953 110 0 0 chr6 19215310 19215428 -163199814 - FLAM_C SINE Alu -15 118 1 1860 154 0 16 chr6 19215494 19215834 -163199408 + AluJb SINE Alu 1 312 0 23 0 0 0 chr6 19215853 19215876 -163199366 + AT_rich Low_complexity Low_complexity 1 23 0 189 305 34 0 chr6 19216461 19216520 -163198722 + L2 LINE L2 3238 3298 -15 30 27 0 0 chr6 19216586 19216623 -163198619 + AT_rich Low_complexity Low_complexity 1 37 0 314 200 29 14 chr6 19217620 19217690 -163197552 - L2 LINE L2 -332 2981 2911 * 943 270 27 0 chr6 19217687 19217946 -163197296 - L2 LINE L2 -740 2574 2309 2162 118 3 3 chr6 19218739 19219036 -163196206 - AluSx SINE Alu -15 297 1 3148 120 30 84 chr6 19219311 19219360 -163195882 + L1MB3 LINE L1 5621 5671 -512 1947 152 3 7 chr6 19219360 19219657 -163195585 + AluSx SINE Alu 1 296 -16 3148 120 30 84 chr6 19219657 19220199 -163195043 + L1MB3 LINE L1 5671 6180 -3 297 312 8 56 chr6 19220465 19220590 -163194652 - Tigger8 DNA MER2_type -547 119 1 219 36 0 0 chr6 19221564 19221592 -163193650 + (A)n Simple_repeat Simple_repeat 1 28 0 1413 182 10 55 chr6 19221761 19221909 -163193333 - AluJo SINE Alu -34 278 148 2559 48 0 0 chr6 19221909 19222204 -163193038 - AluY SINE Alu -16 295 1 1413 182 10 55 chr6 19222204 19222346 -163192896 - AluJo SINE Alu -164 148 1 775 199 0 29 chr6 19224052 19224188 -163191054 - FLAM_A SINE Alu 0 133 2 342 200 43 70 chr6 19224331 19224446 -163190796 - L1ME4a LINE L1 -49 6072 5961 1227 176 5 0 chr6 19224459 19224647 -163190595 + MER5A DNA MER1_type 1 189 0 227 244 39 26 chr6 19225574 19225652 -163189590 + MIR3 SINE MIR 81 159 -49 1393 124 42 28 chr6 19225820 19226037 -163189205 - AluJo SINE Alu -81 231 12 1833 148 7 7 chr6 19227009 19227306 -163187936 + AluJb SINE Alu 1 297 -15 272 181 64 106 chr6 19227976 19228070 -163187172 + MER5B DNA MER1_type 89 178 0 1697 137 79 14 chr6 19228654 19228932 -163186310 - AluSg SINE Alu -14 296 1 198 150 0 0 chr6 19228955 19228995 -163186247 + (TC)n Simple_repeat Simple_repeat 1 40 0 391 238 79 0 chr6 19229085 19229186 -163186056 - MIR SINE MIR -27 235 127 1614 173 7 7 chr6 19229404 19229681 -163185561 + AluJb SINE Alu 5 281 -31 1033 109 0 124 chr6 19230199 19230244 -163184998 - AluJo SINE Alu -143 169 120 2229 120 7 0 chr6 19230244 19230552 -163184690 - AluSx SINE Alu -2 310 1 1033 109 0 124 chr6 19230552 19230699 -163184543 - AluJo SINE Alu -192 120 1 22 0 0 0 chr6 19231322 19231344 -163183898 + AT_rich Low_complexity Low_complexity 1 22 0 2162 121 6 47 chr6 19231977 19232275 -163182967 + MER41B LTR ERV1 1 283 -352 2284 54 40 14 chr6 19232275 19232571 -163182671 + AluY SINE Alu 1 304 -7 2162 121 6 47 chr6 19232571 19232636 -163182606 + MER41B LTR ERV1 283 349 -286 270 81 0 0 chr6 19232639 19232676 -163182566 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 224 119 0 24 chr6 19232669 19232711 -163182531 + (TCC)n Simple_repeat Simple_repeat 2 42 0 * 412 241 0 0 chr6 19232798 19232885 -163182357 - MER5A DNA MER1_type -77 112 26 2487 84 6 0 chr6 19233318 19233629 -163181613 - AluSp SINE Alu 0 313 1 2174 144 15 50 chr6 19233885 19234289 -163180953 + MLT1B LTR MaLR 1 390 0 1802 168 10 7 chr6 19234525 19234817 -163180425 + AluJb SINE Alu 2 294 -18 216 0 0 0 chr6 19234840 19234864 -163180378 + (TA)n Simple_repeat Simple_repeat 2 25 0 387 226 286 8 chr6 19234904 19235037 -163180205 + MIR SINE MIR 32 201 -61 2298 109 0 3 chr6 19235200 19235513 -163179729 + AluSx SINE Alu 1 312 0 196 295 13 51 chr6 19235831 19235909 -163179333 + MER5A DNA MER1_type 1 75 -114 1156 60 0 0 chr6 19235919 19236052 -163179190 - AluSq/x SINE Alu -180 133 1 566 220 0 9 chr6 19236053 19236162 -163179080 - MER5A DNA MER1_type -80 109 2 25 31 0 0 chr6 19237206 19237238 -163178004 + AT_rich Low_complexity Low_complexity 1 32 0 355 307 104 0 chr6 19237288 19237451 -163177791 + L1MB8 LINE L1 4156 4335 -1811 832 189 8 15 chr6 19237496 19237628 -163177614 + FLAM_C SINE Alu 2 132 -11 1210 222 115 8 chr6 19237656 19238012 -163177230 + L1ME3A LINE L1 5776 6169 -1 406 270 110 42 chr6 19237995 19238232 -163177010 + L1MB8 LINE L1 4365 4617 -1529 * 392 323 106 12 chr6 19238293 19238624 -163176618 + L1MB8 LINE L1 4751 5112 -1034 787 144 0 9 chr6 19238642 19238753 -163176489 - FLAM_C SINE Alu -25 118 9 1031 242 137 36 chr6 19238831 19239421 -163175821 + L1MB8 LINE L1 5175 6106 -72 482 190 0 50 chr6 19239421 19239542 -163175700 + L1MB8 LINE L1 6063 6177 -1 1031 242 137 36 chr6 19239542 19239623 -163175619 + L1MB8 LINE L1 6106 6177 -1 346 230 14 81 chr6 19240032 19240051 -163175191 + L1MC4 LINE L1 7820 7839 -203 2191 97 3 39 chr6 19240051 19240360 -163174882 + AluSq SINE Alu 1 298 -15 346 230 14 81 chr6 19240360 19240488 -163174754 + L1MC4 LINE L1 7839 7957 -85 2109 117 10 16 chr6 19241062 19241370 -163173872 - AluSx SINE Alu -6 306 1 1585 139 99 15 chr6 19243662 19243935 -163171307 - AluJb SINE Alu -16 296 1 1984 171 63 22 chr6 19243956 19244371 -163170871 - L1MB8 LINE L1 -6 6172 5741 2409 82 0 3 chr6 19244527 19244830 -163170412 + AluY SINE Alu 2 303 -8 1641 167 10 27 chr6 19244855 19245154 -163170088 + AluJo SINE Alu 1 294 -18 2408 70 7 0 chr6 19245154 19245451 -163169791 + AluY SINE Alu 1 300 -11 253 218 18 0 chr6 19245453 19245508 -163169734 + GA-rich Low_complexity Low_complexity 1 56 0 601 259 75 26 chr6 19245539 19245792 -163169450 + L1MC4a LINE L1 5691 5954 -167 2330 82 0 16 chr6 19246522 19246828 -163168414 + AluY SINE Alu 1 301 -10 21 0 0 0 chr6 19247010 19247031 -163168211 + AT_rich Low_complexity Low_complexity 1 21 0 1635 174 16 35 chr6 19247167 19247483 -163167759 - AluJo SINE Alu -2 310 1 748 145 0 87 chr6 19247496 19247634 -163167608 - FLAM_C SINE Alu -7 126 1 243 336 82 0 chr6 19247681 19247791 -163167451 - MIR3 SINE MIR -41 167 49 866 240 64 0 chr6 19248591 19248795 -163166447 - MIR SINE MIR -33 229 13 4481 153 59 106 chr6 19249057 19249394 -163165848 + MER21A LTR ERV1 1 352 -579 2150 116 3 3 chr6 19249394 19249686 -163165556 - AluSx SINE Alu -20 292 1 4481 153 59 106 chr6 19249686 19250325 -163164917 + MER21A LTR ERV1 352 931 0 1174 131 17 63 chr6 19251375 19251612 -163163630 - AluJo SINE Alu -1 311 86 2355 87 6 0 chr6 19252246 19252557 -163162685 + AluSp SINE Alu 1 313 0 2008 125 56 0 chr6 19254549 19254836 -163160406 + AluSx SINE Alu 1 303 -9 2330 102 0 0 chr6 19255640 19255945 -163159297 + AluSq SINE Alu 1 305 -8 2099 110 7 3 chr6 19256069 19256359 -163158883 - AluSg SINE Alu -19 291 1 452 250 0 9 chr6 19256362 19256474 -163158768 + L1ME2 LINE L1 6042 6152 -12 842 216 0 7 chr6 19256474 19256622 -163158620 + FRAM SINE Alu 1 146 -30 2012 113 10 26 chr6 19257323 19257633 -163157609 - AluSx SINE Alu -7 305 1 2026 120 0 58 chr6 19258398 19258706 -163156536 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 19258787 19258810 -163156432 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr6 19258948 19258968 -163156274 + (T)n Simple_repeat Simple_repeat 1 20 0 436 213 94 39 chr6 19259357 19259484 -163155758 - MIR SINE MIR -111 151 18 23 0 0 0 chr6 19260432 19260455 -163154787 + AT_rich Low_complexity Low_complexity 1 23 0 243 262 33 115 chr6 19261593 19261715 -163153527 - L2 LINE L2 -28 3285 3174 21 0 0 0 chr6 19261902 19261923 -163153319 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 19262356 19262392 -163152850 + AT_rich Low_complexity Low_complexity 1 36 0 2553 50 0 0 chr6 19262427 19262726 -163152516 - AluY SINE Alu -12 299 1 1005 117 0 7 chr6 19262824 19262961 -163152281 + AluSq/x SINE Alu 1 136 -177 27 0 0 0 chr6 19263888 19263915 -163151327 + AT_rich Low_complexity Low_complexity 1 27 0 1961 160 0 10 chr6 19263922 19264229 -163151013 - AluJb SINE Alu -8 304 1 189 0 0 0 chr6 19265338 19265359 -163149883 + (A)n Simple_repeat Simple_repeat 1 21 0 370 307 46 20 chr6 19266137 19266290 -163148952 - MIR3 SINE MIR -37 171 15 2389 81 7 0 chr6 19266584 19266881 -163148361 - AluSg SINE Alu -10 300 2 215 129 0 0 chr6 19266910 19266941 -163148301 + MER5B DNA MER1_type 5 35 -143 706 230 78 11 chr6 19266944 19267151 -163148091 + MLT1G LTR MaLR 303 590 0 677 190 21 35 chr6 19267151 19267293 -163147949 + MER5B DNA MER1_type 36 175 -3 827 204 120 0 chr6 19267318 19267485 -163147757 - MER3 DNA MER1_type -22 187 1 428 123 14 14 chr6 19267493 19267566 -163147676 + MER5A DNA MER1_type 4 76 -113 1447 152 4 41 chr6 19267566 19267810 -163147432 + AluSq SINE Alu 1 235 -78 5431 142 37 63 chr6 19267811 19269254 -163145988 - pTR5 LTR ERV1 -143 2295 276 449 129 0 0 chr6 19269254 19269324 -163145918 + AluS SINE Alu 228 297 -12 2487 64 6 16 chr6 19269326 19269640 -163145602 + AluY SINE Alu 1 311 0 502 165 233 0 chr6 19269640 19269743 -163145499 + MER5A DNA MER1_type 61 187 -2 1181 33 0 33 chr6 19270203 19270354 -163144888 - L1PA5 LINE L1 -1 6153 6008 1904 147 0 27 chr6 19271507 19271806 -163143436 + AluSx SINE Alu 1 291 -21 246 336 43 43 chr6 19271998 19272114 -163143128 - L2 LINE L2 -19 3253 3138 3399 219 160 37 chr6 19272116 19273525 -163141717 + HAL1 LINE L1 856 2411 -96 439 303 70 4 chr6 19273641 19273869 -163141373 - MER112 DNA MER1_type 0 260 18 2114 94 7 3 chr6 19273918 19274217 -163141025 - AluSc SINE Alu 0 309 10 618 162 0 19 chr6 19274497 19274602 -163140640 - MER46A DNA MER2_type 0 236 134 2122 113 0 7 chr6 19274602 19274902 -163140340 - AluSq SINE Alu -15 298 1 226 175 25 0 chr6 19274909 19274949 -163140293 - MER46A DNA MER2_type -187 49 9 2384 62 0 13 chr6 19275393 19275698 -163139544 + AluSg SINE Alu 1 301 -9 1735 174 17 0 chr6 19275999 19276292 -163138950 - AluSx SINE Alu -14 298 1 296 276 87 24 chr6 19276526 19276653 -163138589 - L2 LINE L2 -17 3255 3121 282 283 11 0 chr6 19279199 19279291 -163135951 + MIR3 SINE MIR 93 185 -23 221 146 0 55 chr6 19279794 19279849 -163135393 + (CCCCCG)n Simple_repeat Simple_repeat 6 57 0 216 155 35 17 chr6 19280029 19280087 -163135155 + (CCG)n Simple_repeat Simple_repeat 1 59 0 36 62 0 0 chr6 19280124 19280188 -163135054 + GC_rich Low_complexity Low_complexity 1 64 0 225 0 0 0 chr6 19280188 19280213 -163135029 + (CGG)n Simple_repeat Simple_repeat 3 27 0 27 49 0 0 chr6 19280280 19280321 -163134921 + GC_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr6 19280500 19280526 -163134716 + GC_rich Low_complexity Low_complexity 1 26 0 190 282 127 0 chr6 19280930 19281001 -163134241 - L2 LINE L2 -9 3304 3225 1051 167 56 60 chr6 19281236 19281333 -163133909 - MER8 DNA MER2_type -3 236 140 1894 146 0 16 chr6 19281333 19281642 -163133600 + AluJb SINE Alu 6 309 -3 1051 167 56 60 chr6 19281642 19281778 -163133464 - MER8 DNA MER2_type -99 140 4 331 226 15 90 chr6 19281890 19282023 -163133219 - L2 LINE L2 0 3313 3191 2284 82 3 0 chr6 19282188 19282494 -163132748 + AluSp SINE Alu 1 307 -6 1963 176 71 47 chr6 19282618 19282772 -163132470 + MLT1C LTR MaLR 7 156 -311 2191 109 3 0 chr6 19282772 19283074 -163132168 - AluSx SINE Alu -9 303 1 1963 176 71 47 chr6 19283074 19283369 -163131873 + MLT1C LTR MaLR 156 467 0 1874 128 14 10 chr6 19283371 19283667 -163131575 + AluJo SINE Alu 1 297 -15 239 111 0 22 chr6 19283670 19283715 -163131527 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 1779 158 0 11 chr6 19284332 19284644 -163130598 + AluSx SINE Alu 3 311 0 330 312 40 83 chr6 19284740 19284957 -163130285 - L3 LINE CR1 -76 1501 1299 2235 103 0 6 chr6 19284957 19285268 -163129974 - AluSx SINE Alu -3 309 1 330 312 40 83 chr6 19285268 19285351 -163129891 - L3 LINE CR1 -278 1299 1214 293 164 98 0 chr6 19285361 19285422 -163129820 - MLT1G1 LTR MaLR 0 595 529 283 133 44 0 chr6 19285422 19285467 -163129775 + FRAM/FAM SINE Alu 9 55 -111 995 298 32 49 chr6 19286059 19286319 -163128923 - MLT1I LTR MaLR -3 406 152 2025 121 10 3 chr6 19286319 19286626 -163128616 + AluSg SINE Alu 1 309 -1 995 298 32 49 chr6 19286626 19286734 -163128508 - MLT1I LTR MaLR -257 152 44 594 280 110 30 chr6 19286778 19286978 -163128264 - MIR SINE MIR 0 262 47 2151 123 0 0 chr6 19287269 19287570 -163127672 + AluSx SINE Alu 1 301 -11 585 254 76 87 chr6 19287594 19287667 -163127575 + MIR SINE MIR 2 74 -188 1643 168 28 3 chr6 19287667 19287953 -163127289 - AluJb SINE Alu -19 293 1 585 254 76 87 chr6 19287953 19288143 -163127099 + MIR SINE MIR 74 262 0 2098 107 0 0 chr6 19288182 19288471 -163126771 - AluSx SINE Alu -3 309 21 370 307 120 29 chr6 19289305 19289579 -163125663 - L2 LINE L2 0 3272 2974 2059 114 3 3 chr6 19290044 19290342 -163124900 + AluSx SINE Alu 1 298 -14 25 51 0 0 chr6 19291502 19291541 -163123701 + AT_rich Low_complexity Low_complexity 1 39 0 2727 16 0 0 chr6 19291557 19291866 -163123376 + AluYa5 SINE Alu 1 309 -2 408 194 140 11 chr6 19291871 19291964 -163123278 - FLAM_C SINE Alu -36 107 3 305 241 0 46 chr6 19291988 19292075 -163123167 + MIR SINE MIR 72 154 -108 2376 166 123 17 chr6 19292130 19292595 -163122647 - MLT2B1 LTR ERVL -5 515 2 199 259 103 0 chr6 19292603 19292661 -163122581 + MIR SINE MIR 199 262 0 892 149 23 40 chr6 19292768 19292942 -163122300 + AluJo SINE Alu 121 291 -21 4517 129 75 92 chr6 19292947 19293307 -163121935 + L1MA9 LINE L1 5324 5689 -623 1827 132 0 21 chr6 19293307 19293644 -163121598 + AluSx SINE Alu 1 331 0 4517 129 75 92 chr6 19293644 19293744 -163121498 + L1MA9 LINE L1 5689 5789 -523 333 0 0 0 chr6 19293744 19293781 -163121461 + (CA)n Simple_repeat Simple_repeat 2 38 0 4517 129 75 92 chr6 19293781 19293930 -163121312 + L1MA9 LINE L1 5789 5939 -373 1726 164 6 16 chr6 19293930 19294242 -163121000 + AluJb SINE Alu 2 310 -2 4517 129 75 92 chr6 19294242 19294635 -163120607 + L1MA9 LINE L1 5939 6312 0 199 304 69 39 chr6 19294716 19294818 -163120424 + L2 LINE L2 3209 3313 0 296 246 0 0 chr6 19294898 19294959 -163120283 - MARNA DNA Mariner -177 409 349 277 314 174 16 chr6 19294959 19295080 -163120162 - MIR3 SINE MIR -2 206 67 1981 106 23 26 chr6 19295111 19295413 -163119829 - AluSx SINE Alu -11 301 1 282 335 96 5 chr6 19295427 19295636 -163119606 - MARNA DNA Mariner -271 315 88 813 142 0 0 chr6 19295788 19295915 -163119327 + AluSq/x SINE Alu 1 127 -185 1837 123 57 17 chr6 19295917 19296046 -163119196 + AluSx SINE Alu 1 123 -189 2244 107 0 0 chr6 19296046 19296356 -163118886 + AluSq SINE Alu 1 310 -3 1837 123 57 17 chr6 19296356 19296526 -163118716 + AluSx SINE Alu 123 312 0 813 165 0 0 chr6 19296601 19296734 -163118508 + FLAM_C SINE Alu 1 133 0 938 210 20 0 chr6 19296982 19297177 -163118065 - MER105 DNA DNA -2 202 4 1865 141 10 3 chr6 19297371 19297669 -163117573 - AluSx SINE Alu -10 302 3 963 34 0 0 chr6 19298403 19298520 -163116722 + AluY SINE Alu 184 300 -11 423 0 0 0 chr6 19298528 19298575 -163116667 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr6 19298634 19298657 -163116585 + AT_rich Low_complexity Low_complexity 1 23 0 837 155 0 0 chr6 19298657 19298786 -163116456 - FLAM_C SINE Alu -14 129 1 1891 89 4 0 chr6 19298829 19299086 -163116156 + AluSx SINE Alu 47 304 -8 933 114 0 0 chr6 19299108 19299239 -163116003 - AluSg/x SINE Alu -28 282 152 2228 102 0 3 chr6 19299352 19299656 -163115586 - AluSx SINE Alu -9 303 1 26 88 0 0 chr6 19299657 19299725 -163115517 + AT_rich Low_complexity Low_complexity 1 68 0 2246 89 3 0 chr6 19299725 19300027 -163115215 + AluY SINE Alu 1 303 -8 1531 167 4 8 chr6 19300049 19300313 -163114929 + AluJo SINE Alu 1 263 -49 1475 227 112 10 chr6 19301406 19301789 -163113453 - MLT2F LTR ERVL -58 605 184 1515 164 42 0 chr6 19301797 19302083 -163113159 + AluSx SINE Alu 3 300 -12 237 125 143 18 chr6 19302130 19302186 -163113056 - MLT2F LTR ERVL -600 63 1 271 344 73 0 chr6 19302273 19302369 -163112873 - FRAM SINE Alu -8 158 56 298 240 40 40 chr6 19302375 19302450 -163112792 - FRAM/FAM SINE Alu -97 78 4 5468 168 66 33 chr6 19302453 19302491 -163112751 - pTR5 LTR ERV1 -7 2431 2396 2665 41 0 0 chr6 19302491 19302809 -163112433 + AluYb8 SINE Alu 1 318 0 5468 168 66 33 chr6 19302809 19304261 -163110981 - pTR5 LTR ERV1 -42 2396 735 1895 134 7 0 chr6 19304315 19304606 -163110636 + AluSx SINE Alu 9 301 -11 505 152 0 0 chr6 19304606 19304685 -163110557 + AluJ/FLAM SINE Alu 21 99 -213 2039 125 3 0 chr6 19304734 19305037 -163110205 - AluSx SINE Alu -8 304 1 844 227 6 0 chr6 19305053 19305216 -163110026 + FRAM SINE Alu 1 159 -17 2162 119 0 0 chr6 19305219 19305530 -163109712 + AluSx SINE Alu 1 311 -1 341 202 96 0 chr6 19305533 19305627 -163109615 + MER115 DNA AcHobo 526 628 -65 596 246 22 78 chr6 19305957 19306016 -163109226 - L1MC4a LINE L1 -1894 5914 5853 1713 173 0 10 chr6 19306016 19306316 -163108926 - AluJo SINE Alu -7 305 9 596 246 22 78 chr6 19306316 19306387 -163108855 - L1MC4a LINE L1 -1955 5853 5780 1586 166 24 10 chr6 19306387 19306677 -163108565 - AluJb SINE Alu -18 294 1 596 246 22 78 chr6 19306677 19306777 -163108465 - L1MC4a LINE L1 -2028 5780 5696 1268 169 29 16 chr6 19306778 19307021 -163108221 - AluJb SINE Alu -32 280 35 342 241 121 0 chr6 19307077 19307218 -163108024 - L1P LINE L1 -1106 5040 4883 24 0 0 0 chr6 19307344 19307368 -163107874 + AT_rich Low_complexity Low_complexity 1 24 0 1974 132 3 10 chr6 19307592 19307903 -163107339 - AluSx SINE Alu -3 309 1 1024 299 66 21 chr6 19308157 19308581 -163106661 + LTR16B LTR ERVL 18 460 -4 1127 195 0 19 chr6 19408760 19408975 -163006267 - AluJo SINE Alu -1 311 101 392 276 98 37 chr6 19409066 19409229 -163006013 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 19410638 19410916 -163004326 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 19411357 19411588 -163003654 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 19411657 19411690 -163003552 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 19411995 19412031 -163003211 + (TG)n Simple_repeat Simple_repeat 2 37 0 478 270 92 126 chr6 19412318 19412773 -163002469 + HAL1 LINE L1 813 1282 -1225 1732 142 25 4 chr6 19412773 19413054 -163002188 + AluSx SINE Alu 1 287 -25 478 270 92 126 chr6 19413054 19413077 -163002165 + HAL1 LINE L1 1282 1304 -1203 1048 58 47 6 chr6 19413077 19413248 -163001994 + GA-rich Low_complexity Low_complexity 3 180 0 478 270 92 126 chr6 19413248 19413476 -163001766 + HAL1 LINE L1 1304 1496 -1011 2402 58 6 0 chr6 19413678 19413990 -163001252 + L1PA4 LINE L1 5842 6155 0 1916 149 41 33 chr6 19414364 19414726 -163000516 - MLT1A1 LTR MaLR 0 365 1 1968 126 13 33 chr6 19414903 19415204 -163000038 + AluJb SINE Alu 1 295 -17 236 226 137 48 chr6 19415215 19415339 -162999903 + HAL1 LINE L1 2295 2429 -78 237 288 106 0 chr6 19415513 19415579 -162999663 - L2 LINE L2 -219 3053 2981 347 313 6 38 chr6 19415645 19415805 -162999437 - L2 LINE L2 -290 2982 2828 283 265 59 0 chr6 19415818 19415886 -162999356 + MER91C DNA MER1_type 35 106 -34 637 262 24 62 chr6 19416394 19416662 -162998580 - MIR SINE MIR -3 259 1 209 89 67 0 chr6 19416779 19416824 -162998418 + (TA)n Simple_repeat Simple_repeat 2 49 0 342 317 58 0 chr6 19416973 19417077 -162998165 + L2 LINE L2 3155 3264 -8 2126 124 0 0 chr6 19417285 19417593 -162997649 - AluSx SINE Alu 0 308 1 751 247 30 46 chr6 19417645 19417908 -162997334 + MIR SINE MIR 2 260 -2 511 306 124 0 chr6 19418746 19418955 -162996287 + MIR SINE MIR 2 236 -26 530 301 109 18 chr6 19420404 19420633 -162994609 - MIR SINE MIR -1 261 12 2349 109 0 0 chr6 19420758 19421062 -162994180 + AluSg SINE Alu 1 304 -6 2100 160 3 0 chr6 19421456 19421804 -162993438 + AluSx SINE Alu 1 349 0 3130 115 13 6 chr6 19423018 19423540 -162991702 + L1PB4 LINE L1 5260 5785 -371 195 42 0 0 chr6 19423543 19423567 -162991675 + (CA)n Simple_repeat Simple_repeat 2 25 0 1951 168 24 5 chr6 19423611 19423981 -162991261 + L1PB4 LINE L1 5780 6156 0 291 140 0 0 chr6 19425145 19425195 -162990047 + (A)n Simple_repeat Simple_repeat 1 50 0 1826 146 27 23 chr6 19426403 19426704 -162988538 - AluJo SINE Alu -5 307 6 296 300 127 0 chr6 19427044 19427154 -162988088 - L2 LINE L2 0 3272 3149 231 209 0 0 chr6 19427236 19427279 -162987963 + L2 LINE L2 3267 3309 -4 357 229 110 55 chr6 19427369 19427478 -162987764 - MIR SINE MIR -61 147 33 268 240 27 0 chr6 19427551 19427626 -162987616 - L3b LINE CR1 -383 1200 1124 180 0 0 0 chr6 19427801 19427821 -162987421 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr6 19428044 19428066 -162987176 + AT_rich Low_complexity Low_complexity 1 22 0 349 223 90 147 chr6 19428950 19429161 -162986081 - MIR SINE MIR 0 262 64 529 211 0 0 chr6 19429758 19429853 -162985389 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 19429853 19430143 -162985099 + AluJo SINE Alu 26 309 -3 448 338 59 34 chr6 19430229 19430466 -162984776 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 19431073 19431376 -162983866 - AluSx SINE Alu -13 299 1 819 191 0 0 chr6 19431880 19432011 -162983231 - FLAM_A SINE Alu -2 131 1 195 42 0 0 chr6 19432022 19432046 -162983196 + (A)n Simple_repeat Simple_repeat 1 24 0 257 250 113 0 chr6 19432369 19432449 -162982793 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 19432780 19433079 -162982163 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 19434423 19434679 -162980563 + L2 LINE L2 3015 3313 0 511 238 204 83 chr6 19434721 19434861 -162980381 + L2 LINE L2 2560 2682 -631 2331 82 0 20 chr6 19434861 19435165 -162980077 + AluSg1 SINE Alu 1 298 -11 511 238 204 83 chr6 19435165 19435574 -162979668 + L2 LINE L2 2682 3215 -98 198 103 0 0 chr6 19435574 19435603 -162979639 + (CA)n Simple_repeat Simple_repeat 1 29 0 511 238 204 83 chr6 19435603 19435714 -162979528 + L2 LINE L2 3215 3311 -2 290 296 117 50 chr6 19435861 19436101 -162979141 + L2 LINE L2 3013 3268 -45 2018 151 0 0 chr6 19436846 19437145 -162978097 + AluJb SINE Alu 1 299 -13 289 338 112 39 chr6 19437204 19437686 -162977556 + L2 LINE L2 2288 2804 -510 595 157 0 0 chr6 19437883 19437985 -162977257 - AluSg/x SINE Alu -2 310 209 346 319 76 19 chr6 19437994 19438151 -162977091 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 19438884 19438925 -162976317 + L2 LINE L2 3231 3271 -1 2838 10 0 0 chr6 19440506 19440816 -162974426 - AluYa5 SINE Alu -1 310 1 2800 13 0 0 chr6 19442001 19442307 -162972935 - AluYa5 SINE Alu -5 306 1 791 182 0 0 chr6 19443108 19443229 -162972013 + FLAM_A SINE Alu 1 121 -12 1042 191 4 52 chr6 19443237 19443467 -162971775 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 19443630 19443748 -162971494 - FLAM_C SINE Alu -4 129 1 14196 182 12 0 chr6 19444008 19444599 -162970643 + L1PA13 LINE L1 2438 3020 -3143 1814 160 17 7 chr6 19444599 19444886 -162970356 + AluJb SINE Alu 3 292 -20 14196 182 12 0 chr6 19444886 19448001 -162967241 + L1PA13 LINE L1 3020 6162 -1 426 306 89 20 chr6 19448221 19448469 -162966773 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 19448525 19448861 -162966381 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 19448949 19449200 -162966042 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 19449301 19449513 -162965729 + L1MC/D LINE L1 5513 5753 -2055 3108 120 29 4 chr6 19449513 19450003 -162965239 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 19450050 19450096 -162965146 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 19450153 19450471 -162964771 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 19450631 19450929 -162964313 + AluJb SINE Alu 3 304 -8 2552 52 0 0 chr6 19451613 19451919 -162963323 + AluY SINE Alu 1 306 -5 531 222 106 48 chr6 19451991 19452180 -162963062 - MIR SINE MIR 0 262 63 455 288 120 20 chr6 19454187 19454424 -162960818 - MIR SINE MIR 0 262 1 263 226 0 48 chr6 19454529 19454591 -162960651 + L2 LINE L2 3246 3304 -9 2198 132 0 0 chr6 19454728 19455031 -162960211 + AluSx SINE Alu 1 303 -9 248 254 0 0 chr6 19455251 19455314 -162959928 - L1MC/D LINE L1 -1909 5899 5837 720 156 0 33 chr6 19455335 19455457 -162959785 - FRAM SINE Alu -14 162 45 2212 122 3 6 chr6 19456272 19456584 -162958658 + AluSq SINE Alu 1 311 -2 573 88 0 0 chr6 19457022 19457102 -162958140 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 537 285 50 26 chr6 19458858 19459359 -162955883 + L1MCc LINE L1 1130 1796 -4889 1394 243 75 33 chr6 19459360 19459589 -162955653 + L1MCc LINE L1 2144 2362 -4760 2108 86 4 11 chr6 19459589 19459868 -162955374 + AluSg SINE Alu 18 294 -16 1394 243 75 33 chr6 19459868 19460368 -162954874 + L1MCc LINE L1 2362 3094 -4028 819 168 0 40 chr6 19460375 19460524 -162954718 + FLAM_C SINE Alu 1 143 0 338 320 44 61 chr6 19460979 19461207 -162954035 + L2 LINE L2 2070 2293 -1021 194 298 85 0 chr6 19461995 19462089 -162953153 - MIR SINE MIR -7 255 154 248 316 164 6 chr6 19462137 19462308 -162952934 - MIR SINE MIR -56 206 9 2223 133 41 21 chr6 19462411 19462847 -162952395 + LTR7 LTR ERV1 1 445 -5 27 0 0 0 chr6 19462976 19463003 -162952239 + AT_rich Low_complexity Low_complexity 1 27 0 2111 172 160 13 chr6 19563886 19564350 -162850892 - MER21A LTR ERV1 -27 904 274 903 242 104 67 chr6 19564350 19564771 -162850471 - HAL1 LINE L1 -499 2008 1572 1339 147 0 0 chr6 19564821 19565012 -162850230 - AluSx SINE Alu -121 191 1 428 286 27 43 chr6 19565022 19565207 -162850035 - HAL1 LINE L1 -1245 1262 1081 1779 155 0 7 chr6 19565211 19565488 -162849754 + AluJo SINE Alu 30 304 -8 819 173 79 0 chr6 19565572 19565759 -162849483 - FRAM SINE Alu 0 194 1 1618 254 79 31 chr6 19565760 19566366 -162848876 - HAL1 LINE L1 -1806 701 67 295 211 0 0 chr6 19566519 19566576 -162848666 + MER4D LTR ERV1 1 57 -846 652 78 0 0 chr6 19566577 19566667 -162848575 - AluSp/q SINE Alu -3 310 221 2717 144 26 1 chr6 19566669 19567295 -162847947 + MER72 LTR ERV1 49 722 0 1384 162 22 0 chr6 19567930 19568152 -162847090 - AluJo SINE Alu -21 291 65 458 195 66 25 chr6 19568370 19568511 -162846731 - L1ME3 LINE L1 0 6164 6015 1264 160 0 18 chr6 19568568 19568793 -162846449 + AluJo SINE Alu 84 304 -8 307 191 35 29 chr6 19569093 19569266 -162845976 + C-rich Low_complexity Low_complexity 3 176 0 1967 92 4 11 chr6 19570664 19570925 -162844317 + AluSx SINE Alu 39 297 -15 226 238 40 26 chr6 19571566 19571717 -162843525 + (TA)n Simple_repeat Simple_repeat 1 153 0 2498 59 3 3 chr6 19571802 19572105 -162843137 - AluY SINE Alu -8 303 1 286 82 20 0 chr6 19572288 19572337 -162842905 + Alu SINE Alu 259 308 0 2297 107 0 0 chr6 19572961 19573259 -162841983 - AluSg SINE Alu -12 298 1 435 274 78 0 chr6 19573451 19573604 -162841638 - MIR SINE MIR -2 260 96 679 175 32 8 chr6 19573626 19573752 -162841490 + FLAM_A SINE Alu 5 133 0 2304 85 0 10 chr6 19574448 19574743 -162840499 + AluY SINE Alu 1 292 -19 369 136 45 0 chr6 19574823 19574889 -162840353 - AluS SINE Alu 0 301 233 965 163 0 19 chr6 19574889 19575049 -162840193 - AluJo SINE Alu -155 157 1 2146 124 0 3 chr6 19576033 19576331 -162838911 + AluSx SINE Alu 1 297 -15 463 191 75 11 chr6 19577137 19577231 -162838011 - AluSc SINE Alu -10 299 200 870 111 0 0 chr6 19577236 19577353 -162837889 - FLAM_C SINE Alu -15 118 2 2091 241 78 72 chr6 19577397 19578129 -162837113 - L1MEc LINE L1 -2956 3259 2533 1924 147 0 42 chr6 19578129 19578435 -162836807 - AluSx SINE Alu -19 293 1 2091 241 78 72 chr6 19578435 19578652 -162836590 - L1MEc LINE L1 -3682 2533 2339 2047 111 42 0 chr6 19578652 19578940 -162836302 - AluSx SINE Alu -12 300 1 2091 241 78 72 chr6 19578940 19579107 -162836135 - L1MEc LINE L1 -3876 2339 2174 1660 82 15 0 chr6 19579123 19579329 -162835913 - AluY SINE Alu -7 304 96 2095 143 3 10 chr6 19579563 19579877 -162835365 + AluSx SINE Alu 1 312 0 806 181 12 44 chr6 19579891 19580051 -162835191 + FAM SINE Alu 1 45 -4 1358 170 49 99 chr6 19580585 19580909 -162834333 + AluJo SINE Alu 1 308 -4 2322 84 3 7 chr6 19581098 19581396 -162833846 + AluSc SINE Alu 1 297 -12 1992 145 0 0 chr6 19581502 19581792 -162833450 - AluJb SINE Alu -18 294 5 1623 198 10 0 chr6 19581794 19582082 -162833160 - AluJo SINE Alu -21 291 1 3170 194 79 36 chr6 19582139 19582888 -162832354 - L1MB5 LINE L1 -1 6170 5454 2138 128 0 0 chr6 19582888 19583194 -162832048 - AluSx SINE Alu -6 306 1 3170 194 79 36 chr6 19583194 19583257 -162831985 - L1MB5 LINE L1 -717 5454 5395 2117 107 31 3 chr6 19583257 19583548 -162831694 - AluSq SINE Alu -14 299 1 3170 194 79 36 chr6 19583548 19583880 -162831362 - L1MB5 LINE L1 -776 5395 4929 2036 108 35 7 chr6 19583931 19584219 -162831023 - AluSx SINE Alu -11 301 6 1334 153 47 0 chr6 19584222 19584458 -162830784 - L1MD3 LINE L1 -20 7975 7729 1866 160 3 3 chr6 19584509 19584802 -162830440 - AluJb SINE Alu -19 293 1 2552 65 0 0 chr6 19584835 19585142 -162830100 - AluY SINE Alu -4 307 1 273 278 126 84 chr6 19585598 19585979 -162829263 - MLT1L LTR MaLR -2 613 217 410 103 0 0 chr6 19586379 19586437 -162828805 - L1MB7 LINE L1 -19 6165 6108 1192 115 148 60 chr6 19586445 19586662 -162828580 + MER46A DNA MER2_type 1 236 0 22 70 0 0 chr6 19586724 19586767 -162828475 + AT_rich Low_complexity Low_complexity 1 43 0 2021 192 158 47 chr6 19586780 19586830 -162828412 - L1M4 LINE L1 -495 5683 5640 2405 97 0 0 chr6 19586830 19587129 -162828113 + AluSq SINE Alu 1 299 -14 2021 192 158 47 chr6 19587129 19587804 -162827438 - L1M4 LINE L1 -538 5640 5042 216 0 0 0 chr6 19587804 19587828 -162827414 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2296 75 0 0 chr6 19587828 19588106 -162827136 - AluSg SINE Alu -32 278 1 2021 192 158 47 chr6 19588106 19588432 -162826810 - L1M4 LINE L1 -1135 5043 4529 10827 164 23 17 chr6 19588492 19591561 -162823681 - L1PB1 LINE L1 0 6151 3069 225 0 0 0 chr6 19591568 19591593 -162823649 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 859 136 0 0 chr6 19591605 19591730 -162823512 - FLAM_C SINE Alu -17 126 2 267 143 20 20 chr6 19591734 19591783 -162823459 + MER58A DNA MER1_type 44 92 -15 668 150 231 7 chr6 19591798 19591945 -162823297 + MER58A DNA MER1_type 44 223 -1 2768 272 66 40 chr6 19591946 19592112 -162823130 - L1M4 LINE L1 -1612 4534 4374 2219 98 3 10 chr6 19592112 19592408 -162822834 - AluSx SINE Alu -18 294 1 2206 112 7 3 chr6 19592410 19592713 -162822529 - AluSg SINE Alu -6 304 1 2768 272 66 40 chr6 19592713 19593772 -162821470 - L1M4 LINE L1 -1772 4374 3274 1141 194 0 42 chr6 19593874 19594111 -162821131 - AluJo SINE Alu 0 312 86 2100 129 0 0 chr6 19594593 19594888 -162820354 - AluSx SINE Alu -17 295 1 1098 253 96 73 chr6 19595120 19595509 -162819733 - HAL1b LINE L1 -3 1345 966 1743 148 69 0 chr6 19595509 19595786 -162819456 + AluJo SINE Alu 5 300 -12 1098 253 96 73 chr6 19595786 19596159 -162819083 - HAL1b LINE L1 -382 966 566 26 0 0 0 chr6 19596338 19596364 -162818878 + AT_rich Low_complexity Low_complexity 1 26 0 555 288 62 65 chr6 19596460 19596555 -162818687 - L1MC4a LINE L1 -1900 5908 5814 1675 154 44 17 chr6 19596555 19596853 -162818389 - AluJo SINE Alu -6 306 1 555 288 62 65 chr6 19596853 19597063 -162818179 - L1MC4a LINE L1 -1994 5814 5604 2295 93 30 3 chr6 19597281 19597582 -162817660 - AluSq SINE Alu -4 309 1 583 274 72 48 chr6 19597654 19597986 -162817256 - L1ME3A LINE L1 -218 5952 5613 1540 213 75 65 chr6 19598009 19598218 -162817024 - L1ME3A LINE L1 -5 6165 5960 180 0 0 0 chr6 19598218 19598238 -162817004 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1540 213 75 65 chr6 19598238 19598293 -162816949 - L1ME3A LINE L1 -210 5960 5907 2394 92 0 0 chr6 19598293 19598597 -162816645 - AluSx SINE Alu -8 304 1 1540 213 75 65 chr6 19598597 19598753 -162816489 - L1ME3A LINE L1 -263 5907 5754 1832 157 43 0 chr6 19598753 19599052 -162816190 - AluJo SINE Alu 0 312 1 1540 213 75 65 chr6 19599052 19599215 -162816027 - L1ME3A LINE L1 -416 5754 5574 1999 123 0 63 chr6 19599327 19599644 -162815598 - AluSx SINE Alu -15 297 1 2700 111 24 8 chr6 19600603 19600972 -162814270 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr6 19600996 19601023 -162814219 + (CA)n Simple_repeat Simple_repeat 2 28 0 964 123 0 0 chr6 19602125 19602255 -162812987 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr6 19602258 19602279 -162812963 + AT_rich Low_complexity Low_complexity 1 21 0 1088 171 0 0 chr6 19602627 19602803 -162812439 - AluSg/x SINE Alu -3 307 132 2330 109 0 0 chr6 19602803 19603106 -162812136 - AluSx SINE Alu -9 303 1 749 236 185 35 chr6 19603315 19603683 -162811559 + L1ME4a LINE L1 5476 5898 -223 2103 113 3 23 chr6 19603886 19604186 -162811056 + AluSg SINE Alu 1 294 -16 876 152 17 73 chr6 19604208 19604333 -162810909 + L1MB2 LINE L1 6002 6132 -39 2396 59 0 36 chr6 19604333 19604639 -162810603 + AluY SINE Alu 1 295 -16 1996 149 3 0 chr6 19604642 19604937 -162810305 + AluSx SINE Alu 1 296 -16 876 152 17 73 chr6 19604937 19604985 -162810257 + L1MB2 LINE L1 6134 6169 -2 1083 165 85 0 chr6 19605498 19605698 -162809544 - MER20 DNA MER1_type 0 219 3 1938 160 0 10 chr6 19606000 19606293 -162808949 + AluJb SINE Alu 1 290 -22 854 131 0 0 chr6 19606654 19606776 -162808466 + FLAM_A SINE Alu 8 129 -13 2295 100 0 7 chr6 19606935 19607244 -162807998 + AluSq SINE Alu 1 307 -6 1857 169 16 10 chr6 19607320 19607627 -162807615 - AluJo SINE Alu -3 309 1 2302 93 0 10 chr6 19607902 19608202 -162807040 - AluSq SINE Alu -16 297 1 996 29 7 79 chr6 19608203 19608342 -162806900 - AluSq/x SINE Alu -178 135 7 2930 158 42 52 chr6 19608633 19608689 -162806553 - L1MB5 LINE L1 0 6174 6119 864 129 0 58 chr6 19608689 19608828 -162806414 - FLAM_C SINE Alu -2 131 1 2930 158 42 52 chr6 19608828 19609367 -162805875 - L1MB5 LINE L1 -55 6119 5585 5200 130 43 45 chr6 19609398 19609477 -162805765 - L1MA8 LINE L1 -5 6286 6208 2368 97 3 3 chr6 19609477 19609786 -162805456 + AluSx SINE Alu 1 309 -3 5200 130 43 45 chr6 19609786 19610621 -162804621 - L1MA8 LINE L1 -83 6208 5372 1655 170 88 13 chr6 19610621 19610938 -162804304 - MER2 DNA MER2_type -3 341 1 5200 130 43 45 chr6 19610938 19611039 -162804203 - L1MA8 LINE L1 -919 5372 5272 1858 121 110 0 chr6 19611949 19612222 -162803020 - AluSx SINE Alu -9 303 1 22 35 0 0 chr6 19612368 19612397 -162802845 + AT_rich Low_complexity Low_complexity 1 29 0 998 135 0 0 chr6 19612414 19612555 -162802687 - AluSq/x SINE Alu -171 141 1 788 52 0 0 chr6 19612594 19612691 -162802551 + AluY SINE Alu 212 308 -3 1560 156 0 93 chr6 19612914 19613235 -162802007 + AluJb SINE Alu 1 291 -21 28 0 0 0 chr6 19613728 19613756 -162801486 + AT_rich Low_complexity Low_complexity 1 28 0 1917 149 17 0 chr6 19613913 19614202 -162801040 - AluSx SINE Alu -18 294 1 676 137 29 127 chr6 19614863 19615068 -162800174 + MER53 DNA DNA 1 185 -4 1586 167 17 17 chr6 19616152 19616439 -162798803 + AluJo SINE Alu 6 292 -20 958 161 37 0 chr6 19617166 19617327 -162797915 + FRAM SINE Alu 1 167 -9 2249 113 3 0 chr6 19617601 19617901 -162797341 + AluSx SINE Alu 2 302 -10 1732 150 39 0 chr6 19618246 19618526 -162796716 + AluJb SINE Alu 14 304 -8 379 0 0 0 chr6 19619327 19619371 -162795871 + L1PA3 LINE L1 6109 6152 -3 2063 70 4 4 chr6 19619742 19619999 -162795243 + AluSc SINE Alu 1 257 -52 23 0 0 0 chr6 19620005 19620028 -162795214 + AT_rich Low_complexity Low_complexity 1 23 0 1785 167 0 3 chr6 19620264 19620546 -162794696 + AluJo SINE Alu 1 281 -31 945 130 0 0 chr6 19620622 19620753 -162794489 - FLAM_C SINE Alu -10 133 3 182 323 48 0 chr6 19622076 19622138 -162793104 - MIR3 SINE MIR -6 202 138 252 86 0 0 chr6 19622624 19622659 -162792583 + (TA)n Simple_repeat Simple_repeat 2 36 0 2476 62 0 31 chr6 19622663 19622984 -162792258 - AluY SINE Alu 0 311 1 379 216 45 11 chr6 19622992 19623080 -162792162 - MER103 DNA DNA -73 93 3 188 273 45 45 chr6 19623543 19623631 -162791611 - MER5B DNA MER1_type -13 165 78 1089 141 0 12 chr6 19623634 19623804 -162791438 - FRAM SINE Alu -10 166 1 346 122 0 0 chr6 19623810 19623859 -162791383 + MER5B DNA MER1_type 126 174 -4 1832 155 9 29 chr6 19624374 19624690 -162790552 - AluJo SINE Alu 0 312 3 1804 146 0 7 chr6 19624751 19625031 -162790211 + AluJo SINE Alu 5 282 -30 214 276 163 24 chr6 19625842 19625965 -162789277 - MIR3 SINE MIR -61 147 8 2355 83 10 0 chr6 19625976 19626276 -162788966 - AluSx SINE Alu -9 303 1 306 169 28 84 chr6 19626348 19626419 -162788823 - MER91A DNA MER1_type -128 68 2 2235 114 3 9 chr6 19627186 19627501 -162787741 + AluSq SINE Alu 1 313 0 2437 92 0 9 chr6 19628659 19628974 -162786268 + AluSx SINE Alu 1 312 0 2339 167 8 0 chr6 19629320 19629704 -162785538 - MLT1B LTR MaLR -3 387 1 2170 91 0 4 chr6 19630097 19630403 -162784839 - AluSx SINE Alu 0 314 10 751 222 296 0 chr6 19630578 19630781 -162784461 + Tigger7 DNA MER2_type 1 263 -2224 * 1201 136 79 0 chr6 19630778 19630992 -162784250 + Tigger7 DNA MER2_type 2357 2587 0 2404 66 3 16 chr6 19631407 19631712 -162783530 - AluY SINE Alu -10 301 1 684 269 133 70 chr6 19631964 19632151 -162783091 - HAL1 LINE L1 -6 2501 2327 1900 156 3 10 chr6 19632151 19632453 -162782789 - AluJo SINE Alu -12 300 1 684 269 133 70 chr6 19632453 19632923 -162782319 - HAL1 LINE L1 -180 2327 1791 2483 68 0 10 chr6 19632923 19633232 -162782010 - AluY SINE Alu -5 306 1 684 269 133 70 chr6 19633232 19633305 -162781937 - HAL1 LINE L1 -716 1791 1724 344 235 184 14 chr6 19633379 19633596 -162781646 - HAL1 LINE L1 -1244 1263 1010 261 308 62 8 chr6 19634021 19634151 -162781091 - HAL1 LINE L1 -2134 373 237 2127 100 28 0 chr6 19634302 19634593 -162780649 + AluSx SINE Alu 1 299 -13 1646 112 115 15 chr6 19634801 19635070 -162780172 - AluSx SINE Alu -11 301 6 22 0 0 0 chr6 19637367 19637389 -162777853 + GC_rich Low_complexity Low_complexity 1 22 0 1616 184 0 4 chr6 19640530 19640801 -162774441 + AluJb SINE Alu 1 270 -42 7170 77 43 2 chr6 19640801 19641730 -162773512 + LTR5 LTR ERVK 1 969 0 920 196 26 78 chr6 19642148 19642378 -162772864 - MER58A DNA MER1_type -3 221 4 40211 57 36 2 chr6 19642423 19648313 -162766929 + L1PA5 LINE L1 3 6100 -54 204 40 0 0 chr6 19648313 19648338 -162766904 + (TA)n Simple_repeat Simple_repeat 1 25 0 40211 57 36 2 chr6 19648338 19648395 -162766847 + L1PA5 LINE L1 6100 6154 0 206 282 20 128 chr6 19649485 19649680 -162765562 + L2 LINE L2 3031 3204 -68 876 145 30 0 chr6 19649691 19649822 -162765420 - AluJo SINE Alu -177 135 1 221 308 62 0 chr6 19649824 19649889 -162765353 + L2 LINE L2 3244 3312 -1 368 246 109 0 chr6 19650288 19650398 -162764844 + L2 LINE L2 3192 3313 0 22 0 0 0 chr6 19650641 19650663 -162764579 + AT_rich Low_complexity Low_complexity 1 22 0 789 153 15 8 chr6 19650838 19650969 -162764273 + Tigger4(Zombi) DNA MER2_type 1 132 -2599 495 250 9 9 chr6 19650979 19651091 -162764151 + FRAM SINE Alu 1 112 -64 856 103 146 65 chr6 19651104 19651289 -162763953 + Tigger4(Zombi) DNA MER2_type 2532 2731 0 2322 94 0 7 chr6 19651894 19652202 -162763040 - AluSx SINE Alu -6 306 1 349 256 12 0 chr6 19652209 19652291 -162762951 + L2 LINE L2 3229 3311 -2 335 255 151 9 chr6 19652287 19652393 -162762849 - MIR SINE MIR -130 132 12 * 2037 120 41 0 chr6 19652450 19652741 -162762501 + AluSc SINE Alu 1 303 -6 2249 87 3 20 chr6 19652958 19653257 -162761985 - AluSp SINE Alu -19 294 1 688 163 114 32 chr6 19653380 19653503 -162761739 - FLAM_A SINE Alu 0 133 1 452 294 234 19 chr6 19654403 19654617 -162760625 + MIR SINE MIR 3 262 0 795 180 0 0 chr6 19654709 19654831 -162760411 + FLAM_C SINE Alu 2 123 -10 805 254 93 10 chr6 19655707 19655900 -162759342 - MER58C DNA MER1_type -5 210 2 1453 144 121 0 chr6 19656148 19656412 -162758830 + AluSg SINE Alu 1 296 -14 4436 168 25 18 chr6 19656417 19657145 -162758097 + MER44D DNA MER2_type 1 605 0 782 174 223 38 chr6 19657829 19658013 -162757229 + AluJo SINE Alu 70 287 -25 467 320 67 67 chr6 19659095 19659439 -162755803 + MLT1J LTR MaLR 105 448 -63 2493 117 40 6 chr6 19659806 19660158 -162755084 + THE1B LTR MaLR 1 364 0 189 250 125 14 chr6 19660801 19660873 -162754369 - MIR3 SINE MIR -44 164 85 2221 96 7 3 chr6 19661713 19662006 -162753236 - AluSx SINE Alu -18 294 1 634 224 154 33 chr6 19662098 19662312 -162752930 - MIR SINE MIR 0 262 23 361 90 34 18 chr6 19662799 19662901 -162752341 + MER20 DNA MER1_type 31 195 -24 2292 60 0 0 chr6 19664251 19664533 -162750709 + AluY SINE Alu 30 311 0 244 95 0 0 chr6 19664611 19664653 -162750589 - AluSx SINE Alu 0 299 258 1327 110 6 0 chr6 19664656 19664829 -162750413 - AluSx SINE Alu -138 174 1 1788 206 3 0 chr6 19666262 19666573 -162748669 + AluJb SINE Alu 1 312 0 4127 169 134 108 chr6 19666675 19667766 -162747476 + Charlie1a DNA MER1_type 5 1067 -1694 1377 196 55 0 chr6 19667766 19668037 -162747205 - AluJo SINE Alu -26 286 1 4127 169 134 108 chr6 19668037 19668083 -162747159 + Charlie1a DNA MER1_type 1067 1110 -1651 2134 117 0 7 chr6 19668083 19668410 -162746832 + AluSx SINE Alu 1 312 0 4127 169 134 108 chr6 19668410 19668686 -162746556 + Charlie1a DNA MER1_type 1110 1455 0 2438 70 10 0 chr6 19670021 19670321 -162744921 - AluSp SINE Alu -10 303 1 1943 149 6 19 chr6 19671464 19671780 -162743462 + AluJb SINE Alu 1 312 0 303 333 30 15 chr6 19671788 19671920 -162743322 + MIR3 SINE MIR 36 169 -39 794 62 0 0 chr6 19673088 19673184 -162742058 + AluY SINE Alu 6 101 -210 243 0 0 0 chr6 19673184 19673211 -162742031 + Alu SINE Alu 70 96 -205 1968 69 0 4 chr6 19673214 19673459 -162741783 + AluY SINE Alu 68 311 0 198 288 24 56 chr6 19673955 19674080 -162741162 + L2 LINE L2 2159 2279 -1035 1939 131 66 19 chr6 19674091 19674411 -162740831 + MER2 DNA MER2_type 9 343 -2 350 312 55 15 chr6 19674412 19674614 -162740628 + L2 LINE L2 2281 2490 -824 2728 134 140 110 chr6 19674666 19674753 -162740489 + MSTB-int LTR MaLR 942 1025 -626 1745 163 54 0 chr6 19674753 19675047 -162740195 + AluJb SINE Alu 1 310 -2 2728 134 140 110 chr6 19675047 19675325 -162739917 + MSTB-int LTR MaLR 1025 1293 -358 2134 122 7 0 chr6 19675325 19675628 -162739614 + AluSp SINE Alu 1 305 -8 2728 134 140 110 chr6 19675628 19675945 -162739297 + MSTB-int LTR MaLR 1293 1646 -5 2179 150 85 13 chr6 19675950 19676353 -162738889 + MSTB LTR MaLR 1 364 0 23 0 0 0 chr6 19676790 19676813 -162738429 + AT_rich Low_complexity Low_complexity 1 23 0 282 132 0 0 chr6 19677882 19677935 -162737307 + (TCC)n Simple_repeat Simple_repeat 2 54 0 334 266 100 123 chr6 19677988 19678409 -162736833 + L1M2 LINE L1 594 1004 -5845 28 29 0 0 chr6 19678635 19678670 -162736572 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr6 19678929 19678960 -162736282 + GC_rich Low_complexity Low_complexity 1 31 0 182 326 39 23 chr6 19679512 19679641 -162735601 + L2 LINE L2 2433 2563 -751 4441 166 140 87 chr6 19679659 19680533 -162734709 - MER52A LTR ERV1 -456 1299 251 699 97 0 0 chr6 19680533 19680626 -162734616 - AluSg/x SINE Alu -4 305 213 4441 166 140 87 chr6 19680626 19680892 -162734350 - MER52A LTR ERV1 -1504 251 1 2102 236 86 46 chr6 19681107 19681975 -162733267 - L2 LINE L2 -816 2498 1596 1075 266 96 29 chr6 19681994 19682411 -162732831 - LTR16A LTR ERVL -5 445 1 1682 290 37 24 chr6 19682413 19683034 -162732208 - L2 LINE L2 -1732 1582 954 628 230 146 11 chr6 19683043 19683221 -162732021 + L2 LINE L2 3112 3313 0 320 333 35 0 chr6 19683831 19683945 -162731297 + L2 LINE L2 3191 3308 -5 2368 103 0 0 chr6 19684013 19684315 -162730927 + AluSp SINE Alu 1 302 -11 2259 107 7 3 chr6 19685065 19685374 -162729868 - AluSx SINE Alu -2 310 1 816 151 123 0 chr6 19685624 19685770 -162729472 + MER20 DNA MER1_type 1 164 -55 1040 83 0 0 chr6 19685774 19685906 -162729336 - FLAM_C SINE Alu 0 133 2 2149 161 59 11 chr6 19686377 19686749 -162728493 + MLT2B1 LTR ERVL 1 390 -130 223 274 0 0 chr6 19686749 19686811 -162728431 + A-rich Low_complexity Low_complexity 1 62 0 680 129 0 0 chr6 19687200 19687301 -162727941 - HY3 scRNA scRNA 0 101 1 2145 111 44 0 chr6 19687381 19687678 -162727564 + AluSx SINE Alu 1 310 -2 1830 171 3 0 chr6 19688057 19688343 -162726899 - AluJb SINE Alu -25 287 1 1569 154 8 19 chr6 19688534 19688801 -162726441 - AluJo SINE Alu -12 300 37 40 0 0 0 chr6 19688849 19688889 -162726353 + AT_rich Low_complexity Low_complexity 1 40 0 2185 143 24 8 chr6 19688889 19689266 -162725976 - L1PB3 LINE L1 -7 6147 5765 193 286 48 12 chr6 19689287 19689371 -162725871 + L2 LINE L2 2791 2877 -437 188 298 18 0 chr6 19689620 19689677 -162725565 + L2 LINE L2 3202 3259 -54 1980 146 10 0 chr6 19689745 19690039 -162725203 + AluJb SINE Alu 1 297 -15 38 85 0 0 chr6 19690520 19690614 -162724628 + AT_rich Low_complexity Low_complexity 1 94 0 183 184 0 0 chr6 19692259 19692297 -162722945 + (TG)n Simple_repeat Simple_repeat 2 39 0 2371 82 0 10 chr6 19692532 19692836 -162722406 - AluSx SINE Alu -6 306 6 250 303 0 26 chr6 19694567 19694643 -162720599 - MIR3 SINE MIR -5 203 130 667 161 17 0 chr6 19694836 19694954 -162720288 + FLAM_C SINE Alu 2 121 -22 32 0 0 0 chr6 19694954 19694986 -162720256 + AT_rich Low_complexity Low_complexity 1 32 0 1341 146 0 39 chr6 19695289 19695522 -162719720 - AluJb SINE Alu 0 312 89 592 172 0 0 chr6 19695564 19695657 -162719585 - AluJb SINE Alu -218 94 2 523 175 8 8 chr6 19695717 19695843 -162719399 + CT-rich Low_complexity Low_complexity 1 126 0 989 182 0 11 chr6 19695855 19696031 -162719211 - FRAM SINE Alu -2 174 1 209 256 141 0 chr6 19696246 19696324 -162718918 - MIR SINE MIR -92 170 82 2202 105 20 3 chr6 19696411 19696707 -162718535 + AluSc SINE Alu 1 301 -8 297 227 102 11 chr6 19696749 19696837 -162718405 + L2 LINE L2 3210 3305 -8 392 279 122 27 chr6 19697008 19697155 -162718087 + L2 LINE L2 3111 3271 -1 2133 130 3 0 chr6 19697297 19697590 -162717652 - AluSx SINE Alu -12 300 7 267 224 0 40 chr6 19697644 19697720 -162717522 + MER20B DNA MER1_type 540 612 -171 598 208 66 20 chr6 19697726 19697923 -162717319 + MER20B DNA MER1_type 578 783 0 315 0 0 0 chr6 19698006 19698041 -162717201 + (TA)n Simple_repeat Simple_repeat 1 35 0 2118 97 24 7 chr6 19698042 19698330 -162716912 - AluSq SINE Alu 0 313 21 751 151 0 24 chr6 19698798 19698914 -162716328 + FLAM_C SINE Alu 2 116 -186 402 21 0 0 chr6 19698914 19698961 -162716281 + (CA)n Simple_repeat Simple_repeat 1 47 0 2234 118 3 0 chr6 19699051 19699347 -162715895 + AluSg SINE Alu 1 297 -13 25 51 0 0 chr6 19699441 19699480 -162715762 + AT_rich Low_complexity Low_complexity 1 39 0 1561 156 0 101 chr6 19699488 19699633 -162715609 + AluJb SINE Alu 1 159 -143 1763 136 0 54 chr6 19699633 19699912 -162715330 + AluSx SINE Alu 4 267 -45 1561 156 0 101 chr6 19699912 19699935 -162715307 + AluJb SINE Alu 159 183 -119 236 30 30 0 chr6 19699935 19699968 -162715274 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1561 156 0 101 chr6 19699968 19700124 -162715118 + AluJb SINE Alu 183 293 -9 313 288 33 49 chr6 19700183 19700426 -162714816 - L1ME4a LINE L1 -44 6077 5839 220 259 0 0 chr6 19700540 19700594 -162714648 + (TG)n Simple_repeat Simple_repeat 1 54 0 303 93 0 0 chr6 19700594 19700637 -162714605 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 57 0 0 chr6 19700772 19700807 -162714435 + AT_rich Low_complexity Low_complexity 1 35 0 1567 78 11 117 chr6 19700878 19701159 -162714083 - L1MA5A LINE L1 -10 6287 6037 457 167 0 0 chr6 19701163 19701235 -162714007 + AluS SINE Alu 223 294 -16 262 327 85 28 chr6 19701690 19702008 -162713234 - L2 LINE L2 -1190 2124 1789 2637 43 0 3 chr6 19702148 19702450 -162712792 + AluY SINE Alu 1 301 -10 2008 145 0 0 chr6 19702517 19702827 -162712415 + AluJb SINE Alu 1 310 0 224 349 76 0 chr6 19702965 19703097 -162712145 + L2 LINE L2 1562 1703 -1611 2118 107 21 0 chr6 19703107 19703397 -162711845 + AluSg SINE Alu 1 296 -14 188 333 25 43 chr6 19703399 19703561 -162711681 - L2 LINE L2 -705 2609 2451 194 79 0 53 chr6 19703850 19703888 -162711354 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 2315 64 3 7 chr6 19704673 19704983 -162710259 - AluSg1 SINE Alu 0 309 1 418 155 0 0 chr6 19705384 19705455 -162709787 + AluJ/FLAM SINE Alu 1 71 -241 469 179 0 0 chr6 19705458 19705536 -162709706 - AluJ/FLAM SINE Alu -233 79 2 235 85 0 85 chr6 19705537 19705584 -162709658 - MLT2B1 LTR ERVL -372 143 101 2252 108 14 0 chr6 19705593 19705888 -162709354 - AluSx SINE Alu -13 299 1 683 135 45 0 chr6 19705888 19705999 -162709243 - MLT2B1 LTR ERVL -404 116 1 2294 109 6 6 chr6 19706218 19706530 -162708712 - AluSq SINE Alu -1 312 1 240 35 0 0 chr6 19706530 19706559 -162708683 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1638 162 52 4 chr6 19706559 19706831 -162708411 - AluJo SINE Alu -27 285 1 31 0 0 0 chr6 19706842 19706873 -162708369 + AT_rich Low_complexity Low_complexity 1 31 0 1878 172 0 0 chr6 19706873 19707164 -162708078 - AluJb SINE Alu -21 291 1 2284 86 16 0 chr6 19707924 19708102 -162707140 - AluY SINE Alu -2 309 122 210 37 0 0 chr6 19708102 19708129 -162707113 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2284 86 16 0 chr6 19708129 19708254 -162706988 - AluY SINE Alu -189 122 1 521 229 145 50 chr6 19708289 19708550 -162706692 + MLT1E LTR MaLR 2 391 -263 255 248 60 34 chr6 19708675 19708792 -162706450 - L1MEd LINE L1 -5016 1103 984 302 295 73 109 chr6 19708864 19709193 -162706049 - MLT1I LTR MaLR -80 329 13 1876 132 33 0 chr6 19709430 19709728 -162705514 - AluSq SINE Alu 0 307 1 1596 168 0 83 chr6 19709734 19710061 -162705181 - AluJb SINE Alu -8 304 5 243 190 63 25 chr6 19710457 19710536 -162704706 - L1MC4 LINE L1 -1337 6705 6624 744 168 0 8 chr6 19710553 19710678 -162704564 - FLAM_C SINE Alu -9 124 1 2470 74 0 0 chr6 19710875 19711173 -162704069 + AluSx SINE Alu 1 298 -14 1846 143 17 34 chr6 19711185 19711479 -162703763 + AluSx SINE Alu 1 289 -23 284 264 18 106 chr6 19711580 19711702 -162703540 - L1M4 LINE L1 -1501 4645 4559 1474 173 60 0 chr6 19711702 19711986 -162703256 + AluJb SINE Alu 22 320 0 284 264 18 106 chr6 19711986 19712146 -162703096 - L1M4 LINE L1 -1587 4559 4387 2398 104 0 0 chr6 19712490 19712797 -162702445 + AluSx SINE Alu 1 307 -5 2294 81 0 7 chr6 19713269 19713578 -162701664 - AluY SINE Alu 0 307 1 2265 91 11 0 chr6 19714145 19714431 -162700811 - AluSp SINE Alu -24 289 1 1409 185 56 4 chr6 19714841 19715111 -162700131 - AluJo SINE Alu -28 284 1 2253 110 0 0 chr6 19715763 19716053 -162699189 - AluSg SINE Alu -20 290 1 2280 92 7 3 chr6 19716053 19716347 -162698895 - AluSx SINE Alu -17 295 1 341 221 164 29 chr6 19716458 19716562 -162698680 - MIR3 SINE MIR -26 182 65 627 125 19 19 chr6 19716747 19716851 -162698391 - AluJo SINE Alu -10 302 199 886 163 7 7 chr6 19716851 19716998 -162698244 - AluJo SINE Alu -165 147 1 677 122 0 0 chr6 19717111 19717218 -162698024 - L1MA8 LINE L1 -3 6288 6182 410 263 51 0 chr6 19717258 19717376 -162697866 + MLT1I LTR MaLR 258 381 -28 305 305 156 26 chr6 19717679 19717833 -162697409 + MIR3 SINE MIR 32 205 -3 2172 107 7 3 chr6 19718053 19718342 -162696900 + AluSc SINE Alu 3 292 -17 2004 155 0 3 chr6 19718606 19718902 -162696340 - AluJb SINE Alu -17 295 1 2478 68 0 0 chr6 19719511 19719807 -162695435 - AluY SINE Alu -15 296 1 1987 113 41 17 chr6 19719874 19720167 -162695075 - AluSq SINE Alu -4 309 10 1803 156 0 43 chr6 19720243 19720545 -162694697 - AluJo SINE Alu -23 289 1 1659 129 0 0 chr6 19720772 19721020 -162694222 - L1PB1 LINE L1 -4 6147 5900 844 77 0 0 chr6 19721020 19721124 -162694118 - U6 snRNA snRNA -2 105 2 2277 110 3 3 chr6 19721769 19722078 -162693164 - AluSc SINE Alu 0 309 1 884 118 0 40 chr6 19722778 19723031 -162692211 + (TTCC)n Simple_repeat Simple_repeat 1 242 0 1627 193 24 10 chr6 19723045 19723341 -162691901 - AluJb SINE Alu -10 302 3 2412 109 35 11 chr6 19723454 19723830 -162691412 + L1MA5 LINE L1 5659 6043 -257 845 163 0 7 chr6 19723833 19723968 -162691274 + AluJb SINE Alu 1 134 -178 3448 108 10 29 chr6 19723975 19724495 -162690747 - MER9 LTR ERVK 0 511 2 1035 75 38 113 chr6 19724506 19724614 -162690628 + L1MA5 LINE L1 6028 6114 -186 2147 147 0 3 chr6 19724614 19724927 -162690315 + AluSx SINE Alu 1 312 0 1035 75 38 113 chr6 19724927 19725030 -162690212 + L1MA5 LINE L1 6114 6223 -77 23 68 0 0 chr6 19725030 19725074 -162690168 + AT_rich Low_complexity Low_complexity 1 44 0 270 153 68 0 chr6 19725096 19725155 -162690087 + L1MA5A LINE L1 6235 6297 0 2577 74 0 0 chr6 19725505 19725815 -162689427 + AluY SINE Alu 1 310 -1 266 365 22 17 chr6 19725875 19726056 -162689186 + MIR3 SINE MIR 24 205 -3 327 325 34 39 chr6 19726486 19726692 -162688550 + L2 LINE L2 2682 2886 -428 2294 110 0 0 chr6 19726897 19727188 -162688054 - AluSg SINE Alu -17 293 3 2325 110 0 0 chr6 19727388 19727689 -162687553 - AluSg SINE Alu -3 307 7 2222 91 3 17 chr6 19727699 19727995 -162687247 - AluSq SINE Alu -20 293 2 2058 122 37 0 chr6 19728995 19729289 -162685953 - AluSx SINE Alu -7 305 1 32 26 0 0 chr6 19729320 19729359 -162685883 + AT_rich Low_complexity Low_complexity 1 39 0 422 261 58 27 chr6 19729538 19729742 -162685500 + LTR16C LTR ERVL 1 277 -214 329 245 170 0 chr6 19729780 19729886 -162685356 + LTR16C LTR ERVL 337 460 -31 1259 115 5 35 chr6 19729963 19730163 -162685079 - L1PB2 LINE L1 -1 6150 5957 2034 151 0 0 chr6 19730172 19730476 -162684766 - AluSx SINE Alu -8 304 1 2113 114 11 0 chr6 19730722 19731003 -162684239 + AluJo SINE Alu 10 293 -19 2141 105 21 3 chr6 19731003 19731289 -162683953 + AluSc SINE Alu 1 291 -18 2718 139 83 28 chr6 19731656 19732204 -162683038 - LTR24B LTR ERV1 -6 570 1 2345 71 3 20 chr6 19732307 19732624 -162682618 - AluY SINE Alu 0 311 1 225 274 179 0 chr6 19732783 19732889 -162682353 + MIR SINE MIR 132 256 -6 2138 138 0 0 chr6 19732890 19733194 -162682048 - AluSx SINE Alu -4 308 5 22 94 0 0 chr6 19733262 19733326 -162681916 + AT_rich Low_complexity Low_complexity 1 64 0 2319 87 0 16 chr6 19733406 19733718 -162681524 - AluSp SINE Alu -4 309 3 2343 86 3 0 chr6 19733865 19734157 -162681085 - AluSp SINE Alu -20 293 1 2081 162 0 0 chr6 19734222 19734525 -162680717 - AluSx SINE Alu -9 303 1 1588 238 123 23 chr6 19734625 19735192 -162680050 + MER114 LTR ERV 25 648 0 2504 51 10 3 chr6 19735562 19735858 -162679384 - AluY SINE Alu -13 298 1 2183 99 0 18 chr6 19735895 19736177 -162679065 - AluSg SINE Alu -31 279 3 1694 179 0 45 chr6 19736659 19736971 -162678271 - AluJo SINE Alu -14 298 1 2185 105 0 26 chr6 19737005 19737310 -162677932 + AluSx SINE Alu 14 310 -2 666 198 9 0 chr6 19737507 19737623 -162677619 - FLAM_C SINE Alu -25 118 2 376 285 44 25 chr6 19738745 19738903 -162676339 - MIR SINE MIR -18 244 84 1627 135 128 6 chr6 19739601 19739701 -162675541 - L1MB3 LINE L1 -1 6182 6096 1886 166 10 3 chr6 19739701 19739997 -162675245 - AluJo SINE Alu -14 298 1 1627 135 128 6 chr6 19739997 19740215 -162675027 - L1MB3 LINE L1 -87 6096 5825 2565 59 0 0 chr6 19740730 19741033 -162674209 - AluY SINE Alu -8 303 1 2767 173 44 4 chr6 19741041 19741520 -162673722 + MER54B LTR ERVL 1 498 -295 565 110 20 0 chr6 19741520 19741620 -162673622 + (GA)n Simple_repeat Simple_repeat 2 103 0 1080 197 5 5 chr6 19741620 19741823 -162673419 + MER54B LTR ERVL 491 693 -100 1312 170 4 18 chr6 19743172 19743401 -162671841 - AluJb SINE Alu -86 226 1 1332 115 161 14 chr6 19743423 19743641 -162671601 + AluSg1 SINE Alu 49 298 -11 195 250 73 0 chr6 19743672 19743740 -162671502 + L3 LINE CR1 1380 1452 -125 22 0 0 0 chr6 19743886 19743908 -162671334 + AT_rich Low_complexity Low_complexity 1 22 0 890 90 0 0 chr6 19744763 19744874 -162670368 + AluSp/q SINE Alu 186 296 -17 4146 124 47 11 chr6 19745212 19745338 -162669904 + L1PB3 LINE L1 5462 5582 -572 2601 59 0 0 chr6 19745338 19745641 -162669601 - AluY SINE Alu -8 303 1 4146 124 47 11 chr6 19745641 19745844 -162669398 + L1PB3 LINE L1 5582 5776 -378 396 0 0 0 chr6 19745844 19745888 -162669354 + (CA)n Simple_repeat Simple_repeat 2 45 0 4146 124 47 11 chr6 19745888 19746224 -162669018 + L1PB3 LINE L1 5776 6152 -2 1856 151 7 30 chr6 19747279 19747583 -162667659 + AluJo SINE Alu 1 297 -15 335 250 61 15 chr6 19747682 19747814 -162667428 + MER97b DNA MER1_type? 916 1053 0 1726 163 10 23 chr6 19748433 19748734 -162666508 + AluJo SINE Alu 5 301 -11 265 253 105 11 chr6 19749371 19749466 -162665776 + MIR SINE MIR 50 153 -109 2333 102 0 16 chr6 19749487 19749802 -162665440 - AluSx SINE Alu -2 310 1 201 267 133 0 chr6 19750645 19750705 -162664537 + MIR3 SINE MIR 98 165 -43 1728 104 5 0 chr6 19751029 19751249 -162663993 + AluSx SINE Alu 1 221 -91 210 37 0 0 chr6 19751265 19751292 -162663950 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1200 172 18 35 chr6 19751323 19751550 -162663692 - AluJo SINE Alu -8 304 82 1035 230 96 5 chr6 19751983 19752277 -162662965 - MER57A LTR ERV1 0 403 117 2354 113 0 0 chr6 19752386 19752696 -162662546 - AluSx SINE Alu -2 310 1 249 254 159 16 chr6 19752907 19753033 -162662209 - L2 LINE L2 -1 3312 3169 23 0 0 0 chr6 19753705 19753728 -162661514 + AT_rich Low_complexity Low_complexity 1 23 0 2046 137 27 0 chr6 19754148 19754448 -162660794 + AluSx SINE Alu 1 308 -4 1870 171 30 18 chr6 19754450 19754784 -162660458 + MLT1A1 LTR MaLR 27 364 -1 189 275 0 88 chr6 19755655 19755746 -162659496 + MIR SINE MIR 166 248 -14 387 0 0 0 chr6 19755782 19755825 -162659417 + (TG)n Simple_repeat Simple_repeat 2 44 0 498 278 20 68 chr6 19755883 19756135 -162659107 + MIR SINE MIR 6 245 -17 404 234 40 16 chr6 19756408 19756532 -162658710 + MER5A DNA MER1_type 21 147 -42 341 200 12 147 chr6 19756560 19756730 -162658512 - MER5B DNA MER1_type -30 148 2 227 333 13 0 chr6 19756856 19756931 -162658311 + MER5A DNA MER1_type 112 187 -2 2130 120 3 3 chr6 19757048 19757339 -162657903 + AluSx SINE Alu 1 291 -21 467 173 0 0 chr6 19757791 19757872 -162657370 + MER5A DNA MER1_type 10 90 -99 1558 174 44 20 chr6 19758359 19758657 -162656585 + AluJo SINE Alu 1 305 -7 646 178 31 16 chr6 19758682 19758811 -162656431 - L1MC1 LINE L1 -1 6332 6202 309 194 0 0 chr6 19758915 19758977 -162656265 - LTR5 LTR ERVK -153 816 755 1395 164 35 28 chr6 19758977 19759264 -162655978 - L1MC3 LINE L1 -202 7583 7295 727 142 0 0 chr6 19759266 19759372 -162655870 - MLT1B LTR MaLR -284 106 1 1584 149 90 28 chr6 19759444 19759733 -162655509 - AluJo SINE Alu -5 307 1 2237 116 0 0 chr6 19760539 19760842 -162654400 - AluSx SINE Alu -9 303 1 584 260 173 63 chr6 19760857 19761192 -162654050 + MLT1J LTR MaLR 1 372 -139 1701 184 3 20 chr6 19761253 19761558 -162653684 - AluJo SINE Alu -12 300 1 2492 66 3 0 chr6 19761606 19761907 -162653335 - AluY SINE Alu -9 302 1 545 219 206 20 chr6 19763512 19763658 -162651584 - MER21B LTR ERV1 -690 173 1 513 349 82 28 chr6 19763982 19764362 -162650880 + L2 LINE L2 1702 2133 -1181 1494 168 78 4 chr6 19764362 19764630 -162650612 + AluJo SINE Alu 1 288 -24 513 349 82 28 chr6 19764630 19764893 -162650349 + L2 LINE L2 2133 2380 -934 229 334 154 31 chr6 19765036 19765419 -162649823 + L2 LINE L2 2542 2971 -343 227 180 0 20 chr6 19765471 19765521 -162649721 + MER5B DNA MER1_type 1 49 -129 217 195 24 10 chr6 19765571 19765662 -162649580 - MER5A DNA MER1_type -19 170 1 372 260 0 19 chr6 19765810 19765914 -162649328 + L2 LINE L2 3171 3272 0 208 231 19 0 chr6 19766256 19766308 -162648934 + (TG)n Simple_repeat Simple_repeat 2 54 0 1425 199 14 11 chr6 19766449 19766735 -162648507 - AluJo SINE Alu -6 306 20 37453 60 3 2 chr6 19767826 19773377 -162641865 - L1PA5 LINE L1 0 6154 597 1012 153 0 69 chr6 19773906 19774095 -162641147 - AluJ SINE Alu -15 297 122 299 200 0 12 chr6 19774096 19774176 -162641066 + CT-rich Low_complexity Low_complexity 1 79 0 789 150 39 0 chr6 19774176 19774303 -162640939 - AluJ SINE Alu -169 133 2 1944 151 3 19 chr6 19775711 19776022 -162639220 - AluJb SINE Alu 0 312 7 1453 103 84 5 chr6 19776703 19776916 -162638326 + MER30 DNA MER1_type 1 230 0 460 220 56 13 chr6 19776946 19777104 -162638138 + MIR SINE MIR 50 215 -47 27 0 0 0 chr6 19777198 19777225 -162638017 + AT_rich Low_complexity Low_complexity 1 27 0 2384 124 28 3 chr6 19779518 19779873 -162635369 + THE1B LTR MaLR 1 364 0 2351 104 13 0 chr6 19781099 19781408 -162633834 - AluSp SINE Alu 0 313 1 189 171 0 0 chr6 19782727 19782762 -162632480 + (CTG)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr6 19782763 19782784 -162632458 + AT_rich Low_complexity Low_complexity 1 21 0 566 114 11 23 chr6 19783651 19783739 -162631503 - FLAM_A SINE Alu -20 122 36 34 0 0 0 chr6 19783746 19783780 -162631462 + AT_rich Low_complexity Low_complexity 1 34 0 302 286 217 43 chr6 19783824 19784128 -162631114 + L2 LINE L2 2915 3271 -1 806 170 0 15 chr6 19784622 19784757 -162630485 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 19785025 19785046 -162630196 + AT_rich Low_complexity Low_complexity 1 21 0 259 238 0 88 chr6 19785054 19785134 -162630108 + MIR SINE MIR 175 247 -15 1826 93 0 4 chr6 19785421 19785657 -162629585 + AluSq SINE Alu 1 235 -78 254 299 43 43 chr6 19786245 19786479 -162628763 + L1M4 LINE L1 2795 3028 -3118 1614 59 5 55 chr6 19786744 19786963 -162628279 + AluY SINE Alu 86 293 -18 2368 88 0 0 chr6 19786963 19787259 -162627983 + AluY SINE Alu 1 296 -15 739 218 0 0 chr6 19788333 19788466 -162626776 - FLAM_C SINE Alu 0 133 1 2075 108 0 0 chr6 19788471 19788749 -162626493 - AluSg1 SINE Alu 0 309 32 329 214 70 5 chr6 19789497 19789594 -162625648 - MER5A DNA MER1_type -15 163 53 1663 160 3 33 chr6 19789606 19789906 -162625336 + AluJb SINE Alu 1 291 -21 1212 113 15 10 chr6 19790023 19790218 -162625024 - Tigger2a DNA MER2_type -238 196 1 1290 78 48 0 chr6 19790238 19790404 -162624838 - AluSg/x SINE Alu -5 307 134 359 232 80 8 chr6 19790415 19790540 -162624702 - MER114 LTR ERV -514 134 1 1570 175 0 77 chr6 19790606 19790932 -162624310 + AluJo SINE Alu 1 301 -11 224 154 19 0 chr6 19791049 19791101 -162624141 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 252 65 0 0 chr6 19791105 19791151 -162624091 + LTR66 LTR ERVL 394 439 -171 1987 135 0 0 chr6 19791157 19791445 -162623797 - AluSx SINE Alu -20 292 5 24 53 0 0 chr6 19791454 19791492 -162623750 + AT_rich Low_complexity Low_complexity 1 38 0 1206 174 178 12 chr6 19791492 19791739 -162623503 + AluJo SINE Alu 1 288 -24 269 191 29 15 chr6 19791858 19791926 -162623316 - MER94 DNA DNA -64 70 2 289 302 53 45 chr6 19792038 19792412 -162622830 + L1M4 LINE L1 3778 4154 -1992 365 313 93 65 chr6 19792792 19793388 -162621854 + L1M4 LINE L1 4741 5358 -788 432 0 0 0 chr6 19793388 19793436 -162621806 + (TG)n Simple_repeat Simple_repeat 2 49 0 365 313 93 65 chr6 19793436 19793475 -162621767 + L1M4 LINE L1 5358 5394 -752 2388 105 0 0 chr6 19795341 19795646 -162619596 - AluSc SINE Alu -4 305 1 2131 125 7 7 chr6 19796393 19796690 -162618552 - AluSx SINE Alu -15 297 1 506 121 0 0 chr6 19796690 19796756 -162618486 - AluS SINE Alu -227 86 21 21 0 0 0 chr6 19796873 19796894 -162618348 + AT_rich Low_complexity Low_complexity 1 21 0 1600 165 27 27 chr6 19796897 19797194 -162618048 - AluJo SINE Alu -15 297 1 290 258 0 0 chr6 19797378 19797440 -162617802 - MER91 DNA MER1_type 0 140 79 429 312 62 11 chr6 19797499 19797688 -162617554 - MIR SINE MIR -32 230 35 189 274 228 35 chr6 19797712 19797909 -162617333 + L2 LINE L2 2176 2410 -904 2150 115 123 52 chr6 19797955 19798355 -162616887 + MSTA LTR MaLR 1 428 0 2310 148 63 22 chr6 19798613 19799024 -162616218 + MSTA LTR MaLR 1 428 0 259 333 116 22 chr6 19799174 19799312 -162615930 + L2 LINE L2 3118 3268 -4 239 319 76 35 chr6 19799835 19799906 -162615336 + MIR3 SINE MIR 45 112 -96 2451 91 0 3 chr6 19799906 19800214 -162615028 - AluSq SINE Alu -6 307 1 239 319 76 35 chr6 19800214 19800286 -162614956 + MIR3 SINE MIR 112 194 -14 204 324 95 0 chr6 19804042 19804116 -162611126 - L2 LINE L2 -22 3250 3170 21 57 0 0 chr6 19804289 19804324 -162610918 + AT_rich Low_complexity Low_complexity 1 35 0 2334 65 0 3 chr6 19805629 19805920 -162609322 + AluY SINE Alu 1 290 -21 2138 70 13 47 chr6 19805960 19806261 -162608981 + AluY SINE Alu 1 291 -20 1978 65 4 4 chr6 19806935 19807180 -162608062 + AluY SINE Alu 54 298 -13 2140 116 0 29 chr6 19808361 19808671 -162606571 + AluSg SINE Alu 1 301 -9 332 290 40 24 chr6 19811848 19811972 -162603270 + MIR SINE MIR 24 149 -113 283 114 0 0 chr6 19811973 19812017 -162603225 - L1MB4 LINE L1 -124 6056 6013 733 169 0 0 chr6 19812041 19812165 -162603077 + FRAM SINE Alu 36 159 -17 2303 126 59 0 chr6 19812171 19812406 -162602836 - L1MB2 LINE L1 -153 6018 5748 1971 115 15 78 chr6 19812406 19812737 -162602505 - AluSx SINE Alu -2 310 1 2303 126 59 0 chr6 19812737 19812905 -162602337 - L1MB2 LINE L1 -423 5748 5591 1136 153 121 7 chr6 19813004 19813286 -162601956 - L1MA9 LINE L1 -9 6303 5990 2461 60 0 7 chr6 19814033 19814333 -162600909 + AluY SINE Alu 1 298 -13 453 225 14 67 chr6 19814712 19814936 -162600306 - L2 LINE L2 -1 3312 3017 413 235 20 0 chr6 19815994 19816096 -162599146 - U13 snRNA snRNA 0 104 1 376 240 42 10 chr6 19816232 19816328 -162598914 + MIR SINE MIR 55 153 -55 354 211 60 96 chr6 19816527 19816693 -162598549 - MER103 DNA DNA -1 165 6 2175 144 87 41 chr6 19817716 19818152 -162597090 - MSTB2 LTR MaLR -1 456 1 462 300 18 59 chr6 19818318 19818488 -162596754 + MIR SINE MIR 2 164 -98 2191 101 0 10 chr6 19819185 19819518 -162595724 - AluSg SINE Alu 0 310 1 247 282 51 0 chr6 19819955 19820033 -162595209 - L3 LINE CR1 -1 1576 1495 1087 277 108 2 chr6 19820093 19820501 -162594741 - L2 LINE L2 -1 3312 2856 396 0 0 0 chr6 19820501 19820545 -162594697 + (TG)n Simple_repeat Simple_repeat 2 45 0 1087 277 108 2 chr6 19820545 19820562 -162594680 - L2 LINE L2 -457 2856 2842 1530 145 167 38 chr6 19820562 19820844 -162594398 - MLT2B1 LTR ERVL -94 426 83 1775 122 134 15 chr6 19820844 19821179 -162594063 - THE1C LTR MaLR 0 375 1 1530 145 167 38 chr6 19821179 19821268 -162593974 - MLT2B1 LTR ERVL -437 83 7 507 209 18 18 chr6 19821272 19821382 -162593860 - L2 LINE L2 -633 2681 2572 239 304 43 9 chr6 19821411 19821526 -162593716 + MIR SINE MIR 120 238 -24 261 369 45 25 chr6 19821550 19821748 -162593494 - L3 LINE CR1 -99 1478 1277 267 300 146 0 chr6 19821891 19822001 -162593241 + MIR3 SINE MIR 34 159 -49 2203 132 3 0 chr6 19822018 19822328 -162592914 - AluSq SINE Alu -2 311 1 183 268 0 0 chr6 19822367 19822408 -162592834 - L3 LINE CR1 -351 1226 1186 334 325 16 47 chr6 19822645 19822836 -162592406 + LTR16A LTR ERVL 181 365 -85 1985 136 51 0 chr6 19823152 19823447 -162591795 + AluSx SINE Alu 1 310 -2 2124 126 3 3 chr6 19823605 19823914 -162591328 - AluSq SINE Alu -4 309 1 199 293 89 70 chr6 19824456 19824715 -162590527 - L2 LINE L2 -198 3074 2811 2373 104 0 0 chr6 19825017 19825324 -162589918 - AluSc SINE Alu 0 309 3 324 0 0 0 chr6 19825506 19825542 -162589700 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 34 0 chr6 19825542 19825837 -162589405 - AluSx SINE Alu -7 305 1 471 282 90 29 chr6 19825993 19826382 -162588860 - L1ME LINE L1 -302 5819 5401 193 145 118 158 chr6 19827072 19827148 -162588094 - MIR SINE MIR -103 159 87 21 82 0 0 chr6 19828649 19828698 -162586544 + AT_rich Low_complexity Low_complexity 1 49 0 1137 179 153 58 chr6 19828946 19829259 -162585983 + MER2 DNA MER2_type 2 344 0 961 200 88 117 chr6 19829282 19829657 -162585585 - MLT1A1 LTR MaLR 0 365 2 263 224 35 0 chr6 19830886 19830944 -162584298 - MER5B DNA MER1_type -1 177 118 4121 176 45 27 chr6 19830949 19832783 -162582459 + L1MB8 LINE L1 4282 6161 -17 28 48 0 0 chr6 19832821 19832863 -162582379 + AT_rich Low_complexity Low_complexity 1 42 0 555 290 0 0 chr6 19832873 19833004 -162582238 - MER5B DNA MER1_type -47 131 1 389 303 133 6 chr6 19833014 19833179 -162582063 + MER5A DNA MER1_type 4 189 0 617 295 137 19 chr6 19833460 19834034 -162581208 - L2 LINE L2 -1123 2191 1539 1449 135 0 41 chr6 19834137 19834381 -162580861 - MER46A DNA MER2_type 0 236 3 277 324 48 69 chr6 19834420 19834565 -162580677 - L2 LINE L2 -24 3248 3107 1836 169 10 0 chr6 19835016 19835306 -162579936 + AluSx SINE Alu 1 293 -19 387 0 0 0 chr6 19835317 19835360 -162579882 + (CA)n Simple_repeat Simple_repeat 2 44 0 1515 157 56 21 chr6 19836723 19837010 -162578232 + AluJo SINE Alu 1 297 -15 269 239 84 0 chr6 19837243 19837314 -162577928 - MIR SINE MIR -98 164 88 240 222 0 19 chr6 19837680 19837734 -162577508 - L3 LINE CR1 -1 1576 1524 267 79 0 0 chr6 19839080 19839118 -162576124 + (TG)n Simple_repeat Simple_repeat 2 39 0 269 261 99 70 chr6 19839120 19839262 -162575980 - MIR SINE MIR -89 173 28 345 239 65 19 chr6 19839766 19839921 -162575321 - L1ME4a LINE L1 -249 5872 5711 291 218 0 77 chr6 19840661 19840831 -162574411 + T-rich Low_complexity Low_complexity 4 160 0 2095 109 89 9 chr6 19842010 19842357 -162572885 + THE1C LTR MaLR 1 375 0 189 195 98 0 chr6 19842700 19842741 -162572501 - L2 LINE L2 -5 3267 3223 * 518 259 74 65 chr6 19842717 19842933 -162572309 - MIR SINE MIR -20 242 25 1786 171 0 27 chr6 19842953 19843251 -162571991 + AluJo SINE Alu 1 290 -22 213 314 39 0 chr6 19843321 19843423 -162571819 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 223 286 81 87 chr6 19843875 19844036 -162571206 - L2 LINE L2 -36 3236 3077 866 213 45 15 chr6 19844156 19844358 -162570884 - MER3 DNA MER1_type 0 209 2 1456 178 86 27 chr6 19844504 19844527 -162570715 - AluJo SINE Alu -3 309 289 195 42 0 0 chr6 19844527 19844551 -162570691 + (TC)n Simple_repeat Simple_repeat 2 25 0 1456 178 86 27 chr6 19844551 19844819 -162570423 - AluJo SINE Alu -23 289 1 1889 122 58 3 chr6 19845004 19845299 -162569943 + AluY SINE Alu 1 311 0 1685 169 68 12 chr6 19846000 19846325 -162568917 - MER2 DNA MER2_type 0 344 2 2428 85 0 0 chr6 19848658 19848964 -162566278 - AluY SINE Alu -5 306 1 2353 214 66 49 chr6 19849381 19849722 -162565520 + L1MC4a LINE L1 6928 7262 -733 3025 23 0 0 chr6 19849722 19850071 -162565171 + L1PA4 LINE L1 5799 6147 -8 2353 214 66 49 chr6 19850071 19850615 -162564627 + L1MC4a LINE L1 7262 7951 -44 187 324 67 29 chr6 19850802 19850907 -162564335 - MIR SINE MIR -70 192 84 249 295 93 23 chr6 19851069 19851198 -162564044 + L2 LINE L2 3173 3310 -3 1689 188 3 14 chr6 19851199 19851491 -162563751 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr6 19851763 19851791 -162563451 + AT_rich Low_complexity Low_complexity 1 28 0 745 219 30 12 chr6 19855724 19855893 -162559349 + MIR SINE MIR 41 212 -50 312 236 42 14 chr6 19856457 19856529 -162558713 - MIR SINE MIR -108 154 81 2414 175 68 11 chr6 19856580 19857152 -162558090 - L1MB4 LINE L1 -1 6179 5575 24 0 0 0 chr6 19857159 19857183 -162558059 + AT_rich Low_complexity Low_complexity 1 24 0 201 304 36 0 chr6 19857221 19857277 -162557965 - MIR3 SINE MIR -39 169 112 2170 120 7 0 chr6 19857296 19857604 -162557638 - AluSx SINE Alu -2 310 1 266 290 113 21 chr6 19858029 19858215 -162557027 - L3 LINE CR1 -741 836 634 570 232 49 0 chr6 19860708 19860850 -162554392 + MER20 DNA MER1_type 1 149 -70 407 35 18 0 chr6 19860884 19860941 -162554301 + (TG)n Simple_repeat Simple_repeat 2 59 0 281 227 45 0 chr6 19860958 19861024 -162554218 + MER20 DNA MER1_type 150 218 -1 1604 264 283 21 chr6 19861037 19862185 -162553057 - L2 LINE L2 -63 3250 2404 216 0 0 0 chr6 19862185 19862209 -162553033 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1604 264 283 21 chr6 19862209 19862537 -162552705 - L2 LINE L2 -909 2404 1325 244 203 0 51 chr6 19862614 19862673 -162552569 - L2 LINE L2 0 3313 3258 349 225 181 19 chr6 19862685 19862732 -162552510 + MER112 DNA MER1_type 23 61 -199 261 0 0 0 chr6 19862732 19862761 -162552481 + (CA)n Simple_repeat Simple_repeat 1 29 0 349 225 181 19 chr6 19862761 19862873 -162552369 + MER112 DNA MER1_type 61 208 -52 188 313 0 0 chr6 19862996 19863044 -162552198 - L2 LINE L2 -27 3245 3198 728 140 86 50 chr6 19863683 19863905 -162551337 - L1MA8 LINE L1 -2 6289 6060 666 198 25 64 chr6 19864320 19864348 -162550894 + MER63A DNA MER1_type 50 78 -1610 2158 102 3 7 chr6 19864348 19864642 -162550600 - AluSx SINE Alu -19 293 1 666 198 25 64 chr6 19864642 19864770 -162550472 + MER63A DNA MER1_type 78 200 -10 182 254 189 49 chr6 19865237 19865359 -162549883 + L2 LINE L2 3134 3272 0 1670 188 0 7 chr6 19866827 19867130 -162548112 - AluJb SINE Alu -11 301 1 2382 93 3 0 chr6 19867181 19867481 -162547761 - AluSx SINE Alu -11 301 1 310 285 65 49 chr6 19867495 19867618 -162547624 - L1MC4a LINE L1 -1922 5886 5762 187 283 0 0 chr6 19867766 19867812 -162547430 - L3 LINE CR1 -2 1575 1530 638 273 95 65 chr6 19867914 19868313 -162546929 - MLT1L LTR MaLR -4 611 201 203 267 30 79 chr6 19868451 19868552 -162546690 - L3 LINE CR1 -196 1381 1286 2478 78 0 0 chr6 19869956 19870265 -162544977 - AluY SINE Alu -2 309 1 2034 117 7 7 chr6 19870822 19871112 -162544130 + AluSx SINE Alu 1 290 -22 2155 114 0 0 chr6 19871973 19872279 -162542963 - AluSx SINE Alu 0 308 3 286 303 34 42 chr6 19872652 19872755 -162542487 + MIR SINE MIR 50 153 -109 1299 159 26 9 chr6 19872755 19872987 -162542255 - MER46A DNA MER2_type 0 236 1 286 303 34 42 chr6 19872987 19873002 -162542240 + MIR SINE MIR 153 167 -95 2268 178 55 34 chr6 19874072 19874566 -162540676 - MLT1D LTR MaLR 0 505 2 227 200 18 0 chr6 19874629 19874684 -162540558 + CT-rich Low_complexity Low_complexity 2 57 0 326 329 175 31 chr6 19876053 19876607 -162538635 + L2 LINE L2 1603 2236 -1078 22 35 0 0 chr6 19877100 19877129 -162538113 + AT_rich Low_complexity Low_complexity 1 29 0 2509 110 22 0 chr6 19877763 19878119 -162537123 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr6 19878215 19878254 -162536988 + AT_rich Low_complexity Low_complexity 1 39 0 1568 208 30 33 chr6 19878528 19878893 -162536349 - MLT1A2 LTR MaLR -10 364 1 183 42 0 0 chr6 19881439 19881463 -162533779 + (T)n Simple_repeat Simple_repeat 1 24 0 1851 168 3 0 chr6 19881685 19881983 -162533259 - AluJo SINE Alu -12 300 2 2002 84 3 116 chr6 19883096 19883431 -162531811 + AluSp SINE Alu 1 297 -6 189 211 211 0 chr6 19883603 19883660 -162531582 + MIR3 SINE MIR 133 201 -7 2084 123 7 7 chr6 19885813 19886114 -162529128 - AluSx SINE Alu -11 301 1 357 274 34 75 chr6 19886454 19886600 -162528642 - MIR SINE MIR -74 188 49 838 170 27 67 chr6 19886651 19886761 -162528481 - MLT1E3 LTR MaLR -43 581 468 2344 91 3 0 chr6 19886761 19887057 -162528185 + AluSc SINE Alu 1 297 -12 838 170 27 67 chr6 19887057 19887251 -162527991 - MLT1E3 LTR MaLR -156 468 208 272 283 98 0 chr6 19887917 19888009 -162527233 + MIR3 SINE MIR 93 193 -15 2476 71 0 3 chr6 19888759 19889067 -162526175 + AluY SINE Alu 5 311 0 22 80 0 0 chr6 19889337 19889387 -162525855 + AT_rich Low_complexity Low_complexity 1 50 0 848 199 6 0 chr6 19889418 19889574 -162525668 - FRAM SINE Alu -19 157 1 1932 144 7 16 chr6 19889578 19889883 -162525359 - AluJb SINE Alu -10 302 1 2294 115 0 6 chr6 19889931 19890243 -162524999 - AluSx SINE Alu -2 310 1 291 321 18 72 chr6 19890775 19890822 -162524420 - L2 LINE L2 -552 2762 2714 2012 141 0 7 chr6 19890822 19891121 -162524121 + AluJb SINE Alu 6 302 -10 291 321 18 72 chr6 19891121 19891294 -162523948 - L2 LINE L2 -600 2714 2554 495 0 0 0 chr6 19892444 19892499 -162522743 + (TA)n Simple_repeat Simple_repeat 2 56 0 421 301 97 5 chr6 19892650 19892885 -162522357 - L1 LINE L1 -2860 3286 3028 241 235 131 99 chr6 19893500 19893721 -162521521 - HAL1 LINE L1 -111 2396 2169 1454 158 18 94 chr6 19894015 19894284 -162520958 + L1MC1 LINE L1 6030 6271 -62 2277 138 40 11 chr6 19894284 19894638 -162520604 + THE1B LTR MaLR 1 364 0 1454 158 18 94 chr6 19894638 19894697 -162520545 + L1MC1 LINE L1 6271 6333 0 441 246 42 28 chr6 19894714 19894856 -162520386 + MIR SINE MIR 5 148 -114 197 289 0 0 chr6 19894869 19894914 -162520328 + L2 LINE L2 3217 3261 -11 2087 132 3 0 chr6 19894951 19895254 -162519988 - AluSx SINE Alu -8 304 1 1645 139 114 7 chr6 19895634 19895907 -162519335 - AluSg1 SINE Alu -7 302 1 189 0 0 0 chr6 19895995 19896016 -162519226 + (T)n Simple_repeat Simple_repeat 1 21 0 1085 286 208 33 chr6 19896101 19897089 -162518153 - HAL1 LINE L1 -604 1903 744 261 0 0 0 chr6 19897225 19897254 -162517988 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1823 118 20 104 chr6 19897811 19898158 -162517084 - AluYb8 SINE Alu 0 318 1 242 261 101 0 chr6 19898291 19898360 -162516882 - L1MC2 LINE L1 -57 6287 6212 1719 251 100 69 chr6 19899019 19899768 -162515474 - LTR41 LTR ERVL -1 772 1 427 276 17 9 chr6 19901010 19901126 -162514116 + L2 LINE L2 3197 3313 0 207 344 57 45 chr6 19902501 19902745 -162512497 - MIR SINE MIR -3 259 13 330 26 0 0 chr6 19902962 19903001 -162512241 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1133 243 9 0 chr6 19903422 19903644 -162511598 - MER58A DNA MER1_type 0 224 1 217 269 0 39 chr6 19903666 19903718 -162511524 + L2 LINE L2 3246 3295 -18 606 297 24 19 chr6 19904027 19904239 -162511003 - MLT1K LTR MaLR 0 588 376 221 329 148 33 chr6 19904460 19904819 -162510423 - L2 LINE L2 -337 2977 2578 2121 101 0 37 chr6 19906120 19906449 -162508793 + AluSq SINE Alu 1 318 0 279 323 31 31 chr6 19906544 19906674 -162508568 - L2 LINE L2 -9 3263 3134 404 253 107 20 chr6 19907627 19907777 -162507465 - MIR SINE MIR -11 251 89 288 200 15 15 chr6 19907970 19908035 -162507207 + MER112 DNA MER1_type 5 69 -191 278 314 42 42 chr6 19909182 19909300 -162505942 - L2 LINE L2 -14 3258 3141 1409 159 131 68 chr6 19909662 19910014 -162505228 - MLT1A2 LTR MaLR 0 374 1 323 325 123 0 chr6 19910982 19911136 -162504106 - MIR3 SINE MIR -5 203 31 215 326 65 11 chr6 19911754 19911846 -162503396 + MIR SINE MIR 31 127 -81 1774 141 11 0 chr6 19911864 19912127 -162503115 - AluSg SINE Alu -44 266 1 181 247 35 82 chr6 19912130 19912215 -162503027 + MIR3 SINE MIR 119 199 -9 558 29 0 0 chr6 19912864 19912932 -162502310 + (CA)n Simple_repeat Simple_repeat 2 69 0 469 106 0 59 chr6 19912934 19913019 -162502223 - AluJo SINE Alu -3 309 230 1034 119 0 50 chr6 19913024 19913183 -162502059 - AluJo SINE Alu -161 151 1 572 280 19 6 chr6 19913824 19913981 -162501261 - MER5B DNA MER1_type -13 165 7 206 236 67 90 chr6 19914247 19914336 -162500906 + MIR SINE MIR 120 206 -56 233 245 0 0 chr6 19914422 19914475 -162500767 + (TA)n Simple_repeat Simple_repeat 1 53 0 191 242 23 8 chr6 19914491 19914623 -162500619 + (TA)n Simple_repeat Simple_repeat 1 134 0 2100 189 23 21 chr6 19914989 19915417 -162499825 + MER54A LTR ERVL 473 901 0 2350 92 0 0 chr6 19916749 19917041 -162498201 + AluSx SINE Alu 1 292 -20 212 318 91 27 chr6 19918525 19918635 -162496607 + L2 LINE L2 3144 3260 -12 37 69 0 0 chr6 19919638 19919710 -162495532 + AT_rich Low_complexity Low_complexity 1 72 0 917 207 0 69 chr6 19920745 19920821 -162494421 + MER5A DNA MER1_type 1 81 -108 1557 69 8 69 chr6 19920821 19920952 -162494290 + L1PA10 LINE L1 5939 6050 -118 4557 110 8 15 chr6 19920952 19921568 -162493674 - LTR9 LTR ERV1 0 612 1 1557 69 8 69 chr6 19921568 19921681 -162493561 + L1PA10 LINE L1 6050 6168 0 917 207 0 69 chr6 19921681 19921807 -162493435 + MER5A DNA MER1_type 81 189 0 675 221 29 23 chr6 19922046 19922218 -162493024 + MER46C DNA MER2_type 1 173 -165 575 165 96 0 chr6 19922581 19922724 -162492518 - L1MC3 LINE L1 -167 7828 7441 390 136 0 15 chr6 19922724 19922790 -162492452 - L1MA5 LINE L1 0 6300 6236 2091 127 16 0 chr6 19923046 19923353 -162491889 - AluSx SINE Alu 0 312 1 2288 128 11 16 chr6 19923379 19923755 -162491487 - L1MA5 LINE L1 -61 6239 5866 835 167 39 13 chr6 19923755 19923911 -162491331 - L1MC3 LINE L1 -329 7456 7297 665 296 116 53 chr6 19924068 19924466 -162490776 - MLT1K LTR MaLR -23 565 143 887 297 22 0 chr6 19924662 19924884 -162490358 - MIR SINE MIR -35 227 1 3916 164 46 31 chr6 19924903 19925671 -162489571 + LTR1 LTR ERV1 7 785 0 227 307 20 59 chr6 19925925 19926026 -162489216 + LTR16A LTR ERVL 346 442 -8 322 313 30 15 chr6 19926216 19926347 -162488895 + L2 LINE L2 3009 3141 -172 293 242 48 18 chr6 19926349 19926514 -162488728 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 315 0 0 0 chr6 19926527 19926562 -162488680 + (CA)n Simple_repeat Simple_repeat 1 35 0 475 269 50 0 chr6 19926576 19926695 -162488547 + L2 LINE L2 3188 3312 -1 2172 99 3 0 chr6 19926728 19927040 -162488202 + AluSx SINE Alu 1 313 0 390 297 120 17 chr6 19927250 19927425 -162487817 + MIR SINE MIR 57 249 -13 210 299 65 28 chr6 19927457 19927564 -162487678 + L3 LINE CR1 1462 1572 -5 578 282 20 7 chr6 19927680 19927829 -162487413 + MIR SINE MIR 1 151 -111 2453 91 0 0 chr6 19928013 19928320 -162486922 + AluSc SINE Alu 1 307 -2 21 0 0 0 chr6 19929170 19929191 -162486051 + AT_rich Low_complexity Low_complexity 1 21 0 1106 183 40 5 chr6 19929247 19929449 -162485793 + L1PB4 LINE L1 5946 6154 -2 28 48 0 0 chr6 19930505 19930547 -162484695 + AT_rich Low_complexity Low_complexity 1 42 0 254 115 19 39 chr6 19930815 19930867 -162484375 - L1MA9 LINE L1 0 6312 6262 22 56 0 0 chr6 19930868 19930904 -162484338 + AT_rich Low_complexity Low_complexity 1 36 0 1773 85 29 16 chr6 19930904 19931150 -162484092 - L1PB1 LINE L1 -1 6150 5902 570 238 223 15 chr6 19931151 19931416 -162483826 - L1ME2 LINE L1 -34 6130 5811 1055 103 14 0 chr6 19931443 19931588 -162483654 - AluSg/x SINE Alu -93 219 73 2078 207 148 5 chr6 19931588 19932574 -162482668 - L1ME2 LINE L1 -347 5817 4681 474 238 0 24 chr6 19932579 19932705 -162482537 - L1ME2 LINE L1 -1904 4242 4120 1225 196 31 9 chr6 19933144 19933421 -162481821 + L1ME LINE L1 5328 5609 -512 473 210 0 0 chr6 19933978 19934059 -162481183 - AluJb SINE Alu -189 123 43 25 31 0 0 chr6 19934097 19934129 -162481113 + AT_rich Low_complexity Low_complexity 1 32 0 2143 137 0 3 chr6 19934203 19934510 -162480732 - AluSx SINE Alu -4 308 3 705 254 160 39 chr6 19934521 19935083 -162480159 - L1ME4a LINE L1 -150 5971 5342 399 310 18 0 chr6 19935083 19935196 -162480046 - L2 LINE L2 0 3313 3199 1869 120 53 3 chr6 19935199 19935482 -162479760 - AluSx SINE Alu -15 297 1 396 327 98 43 chr6 19935624 19935951 -162479291 - L1ME4a LINE L1 -1099 5047 4703 232 200 125 25 chr6 19936080 19936200 -162479042 - L1ME4a LINE L1 0 6121 5990 258 193 180 47 chr6 19936298 19936448 -162478794 - L1ME4a LINE L1 -261 5860 5691 2319 119 8 22 chr6 19936593 19936962 -162478280 + THE1B LTR MaLR 1 364 0 2351 82 7 0 chr6 19937010 19937314 -162477928 + AluSp SINE Alu 1 306 -7 975 117 0 48 chr6 19937327 19937472 -162477770 + AluSg SINE Alu 2 139 -171 195 100 0 0 chr6 19937606 19937636 -162477606 + (TG)n Simple_repeat Simple_repeat 1 30 0 2006 61 79 7 chr6 19938069 19938347 -162476895 + AluY SINE Alu 1 298 -13 2005 164 16 16 chr6 19939053 19939419 -162475823 - MER47A DNA MER2_type 0 366 1 837 252 32 5 chr6 19939503 19939721 -162475521 + MER58A DNA MER1_type 1 224 0 438 281 30 55 chr6 19939976 19940140 -162475102 + L2 LINE L2 3134 3293 -20 763 185 0 51 chr6 19940146 19940324 -162474918 - MER104 DNA Tc2 -5 175 7 452 325 25 6 chr6 19942313 19942470 -162472772 + MIR3 SINE MIR 18 177 -31 559 326 85 17 chr6 19942621 19942857 -162472385 - L3 LINE CR1 -3 1574 1323 374 306 189 22 chr6 19942974 19943154 -162472088 - MIR SINE MIR -13 249 40 346 346 9 9 chr6 19943188 19943295 -162471947 - MIR SINE MIR -62 146 40 1071 182 0 0 chr6 19943470 19943640 -162471602 - AluJb SINE Alu -9 303 134 1907 144 11 0 chr6 19943640 19943925 -162471317 - AluSx SINE Alu -11 301 14 289 378 106 0 chr6 19943927 19944115 -162471127 - L3 LINE CR1 -469 1108 901 28 48 0 0 chr6 19944652 19944694 -162470548 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr6 19946221 19946250 -162468992 + AT_rich Low_complexity Low_complexity 1 29 0 992 186 33 0 chr6 19946260 19946443 -162468799 - MER5A DNA MER1_type 0 189 1 260 332 22 90 chr6 19946635 19946903 -162468339 + L2 LINE L2 2948 3197 -75 301 221 97 18 chr6 19947391 19947504 -162467738 + MER103 DNA DNA 11 132 -34 896 158 0 0 chr6 19947521 19947696 -162467546 - FLAM_C SINE Alu 0 175 1 609 120 0 0 chr6 19947913 19948005 -162467237 - AluY SINE Alu -2 309 218 1998 143 31 20 chr6 19948342 19948661 -162466581 - MER46B DNA MER2_type -2495 236 36 2195 143 3 0 chr6 19948661 19948969 -162466273 - AluSx SINE Alu -3 309 1 1998 143 31 20 chr6 19948969 19949006 -162466236 - MER46B DNA MER2_type -2695 36 1 271 288 0 0 chr6 19952127 19952193 -162463049 - L2 LINE L2 -10 3303 3238 1726 151 0 15 chr6 19952196 19952467 -162462775 - AluSx SINE Alu -13 299 33 292 127 0 56 chr6 19952585 19952656 -162462586 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr6 19952755 19952778 -162462464 + AT_rich Low_complexity Low_complexity 1 23 0 674 254 143 37 chr6 19952796 19953146 -162462096 - MLT1J2 LTR MaLR 0 450 64 1885 79 12 4 chr6 19953756 19954009 -162461233 + L1PA10 LINE L1 5905 6159 -9 943 176 0 0 chr6 19954554 19954731 -162460511 - AluJo/FRAM SINE Alu 0 306 130 467 189 0 0 chr6 19954731 19954805 -162460437 - AluJ/FLAM SINE Alu -232 80 7 195 333 0 27 chr6 19955390 19955465 -162459777 - MIR SINE MIR -61 147 75 7821 130 31 26 chr6 19957058 19958462 -162456780 + L1M4c LINE L1 18 1428 -4956 2015 120 0 27 chr6 19958484 19958783 -162456459 + AluY SINE Alu 1 291 -20 6325 85 0 0 chr6 19958784 19959700 -162455542 - L1PA14 LINE L1 -11 6150 5234 784 128 0 128 chr6 19959701 19959896 -162455346 + L1PA14 LINE L1 5077 5246 -900 * 4587 119 34 26 chr6 19959892 19960739 -162454503 + L1M4c LINE L1 1418 2271 -4113 * 13975 34 0 4 chr6 19960737 19962518 -162452724 - L1PA5 LINE L1 -1168 4978 3205 7513 32 2 0 chr6 19962519 19963689 -162451553 + L1PA5 LINE L1 4978 6149 -5 528 113 26 35 chr6 19963689 19963798 -162451444 + L1M4c LINE L1 2264 2371 -4013 1857 162 16 21 chr6 19963804 19964180 -162451062 + L1MB3 LINE L1 5810 6183 0 261 250 62 42 chr6 19964257 19964353 -162450889 + L2 LINE L2 3208 3305 -8 3061 184 22 30 chr6 19964415 19965055 -162450187 + MER82 DNA MER2_type 19 653 0 1406 134 0 13 chr6 19965724 19965963 -162449279 - L1MA9 LINE L1 0 6312 6077 2438 34 24 0 chr6 19966226 19966520 -162448722 - L1PA5 LINE L1 0 6154 5854 3814 35 6 0 chr6 19966520 19967001 -162448241 + L1P2 LINE L1 5300 5783 -371 390 216 46 106 chr6 19967439 19967843 -162447399 + MLT1C LTR MaLR 1 345 -122 190 256 44 100 chr6 19970659 19970819 -162444423 + MIR SINE MIR 56 206 -56 1829 157 27 0 chr6 19971277 19971570 -162443672 + AluSx SINE Alu 3 303 -9 792 291 10 33 chr6 19971791 19971969 -162443273 + LTR16B LTR ERVL 173 354 -110 189 0 0 0 chr6 19971969 19971990 -162443252 + (CAT)n Simple_repeat Simple_repeat 1 21 0 2176 110 3 0 chr6 19971990 19972281 -162442961 - AluSg SINE Alu -18 292 1 792 291 10 33 chr6 19972281 19972400 -162442842 + LTR16B LTR ERVL 352 464 0 229 236 97 28 chr6 19972929 19973001 -162442241 + MIR3 SINE MIR 110 186 -22 597 252 31 83 chr6 19973409 19973663 -162441579 - MER102b DNA MER1_type -1 340 100 1829 180 0 7 chr6 19973677 19973977 -162441265 - AluJo SINE Alu -9 303 6 25 0 0 0 chr6 19973982 19974007 -162441235 + AT_rich Low_complexity Low_complexity 1 25 0 1524 182 19 0 chr6 19974109 19974378 -162440864 + AluJo SINE Alu 39 312 0 490 328 50 0 chr6 19974471 19974651 -162440591 - MIR SINE MIR 0 262 74 316 196 27 18 chr6 19975864 19975976 -162439266 + CT-rich Low_complexity Low_complexity 2 114 0 293 245 117 10 chr6 19976322 19976384 -162438858 + MIR SINE MIR 20 74 -134 1800 142 15 89 chr6 19976384 19976722 -162438520 - AluSq SINE Alu 0 313 1 293 245 117 10 chr6 19976722 19976780 -162438462 + MIR SINE MIR 74 160 -48 1936 173 24 0 chr6 19976858 19977194 -162438048 - MER7A DNA MER2_type -4 342 1 22 0 0 0 chr6 19977306 19977328 -162437914 + AT_rich Low_complexity Low_complexity 1 22 0 510 266 9 0 chr6 19977812 19977921 -162437321 - MER81 DNA DNA -1 113 4 358 262 14 7 chr6 19978174 19978221 -162437021 + (TA)n Simple_repeat Simple_repeat 1 46 -100 2017 88 4 0 chr6 19978221 19978483 -162436759 + AluY SINE Alu 39 301 -10 358 262 14 7 chr6 19978483 19978580 -162436662 + (TA)n Simple_repeat Simple_repeat 46 146 0 198 0 0 0 chr6 19978679 19978701 -162436541 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 681 230 8 4 chr6 19979344 19979600 -162435642 + CT-rich Low_complexity Low_complexity 1 257 0 854 166 12 14 chr6 19979617 19980123 -162435119 + CT-rich Low_complexity Low_complexity 1 505 0 681 197 6 11 chr6 19980137 19980315 -162434927 + CT-rich Low_complexity Low_complexity 4 180 0 376 224 32 115 chr6 19980748 19980904 -162434338 - MIR SINE MIR -59 203 61 497 276 135 20 chr6 19981042 19981495 -162433747 + L1ME LINE L1 5261 5765 -356 1457 114 10 87 chr6 19981557 19981792 -162433450 - L1MA8 LINE L1 -279 6012 5803 1783 123 98 4 chr6 19981792 19982068 -162433174 - AluSx SINE Alu -6 306 5 1457 114 10 87 chr6 19982068 19982131 -162433111 - L1MA8 LINE L1 -488 5803 5737 568 345 102 34 chr6 19982261 19982984 -162432258 - L2 LINE L2 -1771 1543 871 727 174 76 14 chr6 19982984 19983128 -162432114 + FRAM SINE Alu 1 153 -13 1702 174 26 66 chr6 19983138 19983293 -162431949 + MLT1A1 LTR MaLR 1 161 -204 1607 187 53 13 chr6 19983293 19983409 -162431833 + AluJo SINE Alu 1 111 -201 558 67 0 0 chr6 19983409 19983484 -162431758 + (CA)n Simple_repeat Simple_repeat 1 75 0 1607 187 53 13 chr6 19983484 19983667 -162431575 + AluJo SINE Alu 111 312 0 1702 174 26 66 chr6 19983667 19983891 -162431351 + MLT1A1 LTR MaLR 161 365 0 568 345 102 34 chr6 19983891 19984007 -162431235 - L2 LINE L2 -2451 863 635 336 24 0 0 chr6 19984873 19984914 -162430328 + (CA)n Simple_repeat Simple_repeat 2 42 0 249 248 103 34 chr6 19985115 19985232 -162430010 + 7SK RNA RNA 1 125 -68 565 101 0 13 chr6 19985839 19985918 -162429324 - MADE1 DNA Mariner 0 80 3 196 344 39 31 chr6 19986764 19986892 -162428350 + MIR3 SINE MIR 7 135 -73 643 184 18 0 chr6 19987757 19987866 -162427376 - MER81 DNA DNA -1 113 3 1303 83 0 0 chr6 19988104 19988273 -162426969 - L1MA2 LINE L1 0 6304 6136 1739 42 0 0 chr6 19988273 19988466 -162426776 + L1PA3 LINE L1 5960 6152 -3 6348 110 42 4 chr6 19988474 19989846 -162425396 - L1MA1 LINE L1 -170 6132 4697 28 0 0 0 chr6 19990214 19990242 -162425000 + AT_rich Low_complexity Low_complexity 1 28 0 4604 83 7 0 chr6 19990246 19990822 -162424420 - L1PA10 LINE L1 -11 6157 5578 657 306 104 87 chr6 19990985 19991743 -162423499 + HAL1b LINE L1 1 1839 -668 183 258 0 61 chr6 19992229 19992295 -162422947 + L2 LINE L2 3252 3313 0 21 0 0 0 chr6 19992378 19992399 -162422843 + AT_rich Low_complexity Low_complexity 1 21 0 1936 150 7 3 chr6 19992552 19992858 -162422384 - AluSx SINE Alu -5 307 1 195 348 0 0 chr6 19993846 19993915 -162421327 + MIR SINE MIR 194 262 0 325 322 190 5 chr6 19994051 19994262 -162420980 + L2 LINE L2 1825 2074 -1240 199 390 0 0 chr6 19994355 19994432 -162420810 - L2 LINE L2 -9 3263 3187 430 294 84 52 chr6 19994474 19994821 -162420421 + MLT1I LTR MaLR 40 397 -12 207 100 0 0 chr6 19995614 19995644 -162419598 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 651 31 41 10 chr6 19995651 19995748 -162419494 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1904 142 0 4 chr6 19995749 19996024 -162419218 - AluSx SINE Alu -38 274 1 3673 113 14 2 chr6 19996216 19996722 -162418520 - MER75 DNA T2_type 0 514 3 2415 106 0 0 chr6 19997170 19997482 -162417760 + AluSx SINE Alu 1 312 0 210 306 100 96 chr6 19997518 19998100 -162417142 - L2 LINE L2 -455 2859 2276 1038 189 92 10 chr6 19998455 19998661 -162416581 - MER58A DNA MER1_type -1 223 1 329 319 57 97 chr6 20000818 20001066 -162414176 - L3 LINE CR1 -107 1470 1233 353 241 12 12 chr6 20001260 20001343 -162413899 - MIR3 SINE MIR -28 180 98 2073 104 14 4 chr6 20001894 20002214 -162413028 + AluSc SINE Alu 1 323 0 198 71 0 0 chr6 20003108 20003136 -162412106 + (GGGAGA)n Simple_repeat Simple_repeat 3 30 0 757 124 0 0 chr6 20003320 20003433 -162411809 - AluSg/x SINE Alu -1 309 197 25 0 0 0 chr6 20003616 20003641 -162411601 + AT_rich Low_complexity Low_complexity 1 25 0 1768 161 58 0 chr6 20003701 20003992 -162411250 + AluJb SINE Alu 1 308 -4 204 40 0 0 chr6 20005342 20005367 -162409875 + (T)n Simple_repeat Simple_repeat 1 25 0 215 211 74 84 chr6 20005985 20006080 -162409162 + MIR SINE MIR 158 251 -11 * 218 255 0 0 chr6 20006046 20006097 -162409145 + L2 LINE L2 3263 3313 0 222 91 0 0 chr6 20006534 20006567 -162408675 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2232 129 0 0 chr6 20007121 20007431 -162407811 - AluSx SINE Alu -2 310 1 227 407 19 12 chr6 20007591 20007753 -162407489 + L2 LINE L2 2930 3092 -180 2390 97 3 0 chr6 20007901 20008212 -162407030 + AluSx SINE Alu 1 312 0 289 339 8 0 chr6 20009037 20009164 -162406078 + MIR SINE MIR 132 259 -3 207 292 46 0 chr6 20010838 20010903 -162404339 + L3 LINE CR1 1509 1576 -1 193 26 53 53 chr6 20010934 20010972 -162404270 + (TAAG)n Simple_repeat Simple_repeat 4 41 0 1759 184 3 0 chr6 20011558 20011852 -162403390 - AluJb SINE Alu -17 295 1 222 37 0 0 chr6 20011852 20011879 -162403363 + (T)n Simple_repeat Simple_repeat 1 27 0 205 344 33 11 chr6 20011879 20011969 -162403273 - MIR SINE MIR -92 116 25 2362 82 0 0 chr6 20012000 20012292 -162402950 + AluSc SINE Alu 1 292 -17 216 0 0 0 chr6 20013053 20013077 -162402165 + (T)n Simple_repeat Simple_repeat 1 24 0 2142 101 34 0 chr6 20013665 20013963 -162401279 + AluSq SINE Alu 1 308 -5 511 248 239 10 chr6 20018154 20018464 -162396778 + L1ME4a LINE L1 5736 6116 -5 35 0 0 0 chr6 20018495 20018530 -162396712 + AT_rich Low_complexity Low_complexity 1 35 0 373 266 55 51 chr6 20020599 20020755 -162394487 + MIR SINE MIR 35 191 -62 641 228 137 25 chr6 20020758 20020999 -162394243 + L2 LINE L2 3046 3313 0 546 272 88 55 chr6 20021041 20021258 -162393984 + MIR SINE MIR 2 225 -37 2348 131 70 15 chr6 20021587 20021984 -162393258 - MSTA LTR MaLR -9 419 1 6803 170 59 4 chr6 20021984 20023189 -162392053 - MSTA-int LTR MaLR 0 1651 381 473 324 71 18 chr6 20023355 20023580 -162391662 - MIR SINE MIR -6 256 20 263 302 22 122 chr6 20023815 20024037 -162391205 + L2 LINE L2 3048 3247 -25 398 296 184 14 chr6 20024541 20024764 -162390478 + MIR SINE MIR 2 262 0 278 294 31 47 chr6 20024947 20025063 -162390179 + MIR3 SINE MIR 48 160 -48 281 286 11 0 chr6 20025065 20025156 -162390086 - MER117 DNA MER1_type -2 195 104 184 220 20 20 chr6 20025250 20025300 -162389942 + MIR3 SINE MIR 159 208 0 638 247 20 0 chr6 20026135 20026281 -162388961 - MLT1A1 LTR MaLR 0 365 217 498 337 35 5 chr6 20026723 20026925 -162388317 - MIR SINE MIR -10 252 45 24 0 0 0 chr6 20028005 20028029 -162387213 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr6 20028734 20028787 -162386455 + (TTTCC)n Simple_repeat Simple_repeat 1 53 0 2239 88 18 0 chr6 20028803 20029088 -162386154 - AluSc SINE Alu -19 290 1 243 0 0 0 chr6 20030450 20030477 -162384765 + (T)n Simple_repeat Simple_repeat 1 27 0 2464 164 34 7 chr6 20031269 20031683 -162383559 - MSTA LTR MaLR 0 428 4 6266 180 102 62 chr6 20031684 20033201 -162382041 - MSTA-int LTR MaLR 0 1580 3 2490 164 19 24 chr6 20033208 20033634 -162381608 - MSTA LTR MaLR -4 424 1 1351 146 32 14 chr6 20033634 20033854 -162381388 + MSTB1 LTR MaLR 79 302 -130 234 192 0 0 chr6 20034102 20034154 -162381088 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1178 246 87 58 chr6 20034176 20034680 -162380562 - L1MC4 LINE L1 -142 7900 7382 2301 172 8 14 chr6 20034889 20035256 -162379986 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr6 20036036 20036064 -162379178 + AT_rich Low_complexity Low_complexity 1 28 0 339 44 0 0 chr6 20036623 20036668 -162378574 + (T)n Simple_repeat Simple_repeat 1 45 0 183 80 0 0 chr6 20036695 20036720 -162378522 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 510 311 183 28 chr6 20036918 20037625 -162377617 - L1ME4a LINE L1 -3 6118 5303 3376 155 11 9 chr6 20037915 20038549 -162376693 + L1MA8 LINE L1 5652 6286 -5 1117 324 123 27 chr6 20038692 20039322 -162375920 + L3 LINE CR1 272 1011 -566 1301 167 147 82 chr6 20039322 20039711 -162375531 - MLT2D LTR ERVL 0 414 1 1117 324 123 27 chr6 20039711 20039961 -162375281 + L3 LINE CR1 1011 1236 -341 545 277 126 25 chr6 20039964 20040242 -162375000 - MLT1K LTR MaLR -2 586 281 7439 151 35 39 chr6 20040275 20041229 -162374013 + L1MA7 LINE L1 3769 4726 -1565 312 48 0 0 chr6 20041229 20041271 -162373971 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7439 151 35 39 chr6 20041271 20042366 -162372876 + L1MA7 LINE L1 4726 5788 -503 201 39 0 0 chr6 20042366 20042392 -162372850 + (CA)n Simple_repeat Simple_repeat 1 26 0 7439 151 35 39 chr6 20042392 20042772 -162372470 + L1MA7 LINE L1 5788 6168 -123 547 335 132 10 chr6 20042957 20043267 -162371975 + L3 LINE CR1 1229 1576 -1 217 246 18 0 chr6 20044205 20044262 -162370980 + MIR SINE MIR 107 164 -98 615 265 74 56 chr6 20044841 20045165 -162370077 - LTR33 LTR ERVL -187 334 5 2347 99 3 0 chr6 20045886 20046189 -162369053 - AluSx SINE Alu 0 312 9 1941 96 37 51 chr6 20047479 20047833 -162367409 + L1PA13 LINE L1 5812 6160 -3 256 303 34 0 chr6 20048155 20048244 -162366998 + MIR SINE MIR 123 214 -48 594 293 66 47 chr6 20048287 20048526 -162366716 - MIR SINE MIR -16 246 7 392 341 101 36 chr6 20048803 20049317 -162365925 - L2 LINE L2 -1 3271 2715 404 321 80 15 chr6 20049617 20049754 -162365488 + MIR3 SINE MIR 47 192 -16 343 383 22 17 chr6 20049902 20050082 -162365160 - MIR3 SINE MIR -13 195 15 1726 219 54 43 chr6 20055129 20055591 -162359651 + MLT1C LTR MaLR 1 467 0 637 193 70 46 chr6 20056063 20056402 -162358840 - MER31B LTR ERV1 -5 461 1 294 191 238 41 chr6 20056793 20056940 -162358302 + LTR33 LTR ERVL 72 247 -276 308 318 129 18 chr6 20057862 20058032 -162357210 + MIR SINE MIR 7 195 -67 471 35 0 0 chr6 20058454 20058511 -162356731 + (CA)n Simple_repeat Simple_repeat 2 58 0 1201 145 28 5 chr6 20058511 20058725 -162356517 - MER46A DNA MER2_type -2 234 16 2495 210 50 39 chr6 20059354 20059939 -162355303 + MLT1E LTR MaLR 3 593 0 586 200 91 24 chr6 20060859 20061024 -162354218 + MER5B DNA MER1_type 1 176 -2 1713 149 82 7 chr6 20061299 20061581 -162353661 - AluJb SINE Alu -9 303 1 259 308 113 13 chr6 20061683 20061842 -162353400 - L2 LINE L2 -188 3084 2910 1734 184 113 30 chr6 20061874 20062315 -162352927 + MLT1D LTR MaLR 28 505 0 2378 71 0 3 chr6 20062473 20062767 -162352475 + AluY SINE Alu 1 293 -18 425 345 14 7 chr6 20062956 20063104 -162352138 - MIR3 SINE MIR -57 151 3 1937 119 0 18 chr6 20063543 20063874 -162351368 - AluSc SINE Alu 0 326 1 22 35 0 0 chr6 20064437 20064466 -162350776 + AT_rich Low_complexity Low_complexity 1 29 0 2641 171 13 6 chr6 20064473 20064995 -162350247 - L1MC2 LINE L1 -19 6325 5800 196 307 72 72 chr6 20065589 20065755 -162349487 + MER5A DNA MER1_type 1 166 -23 736 238 6 0 chr6 20065773 20065937 -162349305 - MER58A DNA MER1_type -14 210 46 1687 168 34 0 chr6 20065956 20066224 -162349018 + AluJb SINE Alu 1 277 -35 3436 138 16 2 chr6 20066241 20066822 -162348420 + L1MB3 LINE L1 5593 6181 -2 282 29 0 0 chr6 20068087 20068122 -162347120 + (TG)n Simple_repeat Simple_repeat 1 35 0 1783 173 35 49 chr6 20068213 20068583 -162346659 + MLT1A1 LTR MaLR 1 365 0 296 258 48 0 chr6 20069124 20069186 -162346056 - MIR SINE MIR -190 72 8 376 275 0 64 chr6 20069357 20069528 -162345714 + MIR SINE MIR 89 248 -14 24569 131 17 20 chr6 20070147 20076545 -162338697 + L1PA8A LINE L1 4 6444 -2 1234 98 0 0 chr6 20079262 20079425 -162335817 - AluSg/x SINE Alu -16 296 134 2196 108 7 3 chr6 20079425 20079730 -162335512 - AluSq SINE Alu -7 306 1 404 257 164 26 chr6 20079918 20080070 -162335172 - MIR SINE MIR -21 241 69 241 128 33 44 chr6 20080698 20080878 -162334364 + (TA)n Simple_repeat Simple_repeat 1 178 0 464 222 7 0 chr6 20081653 20081797 -162333445 + CT-rich Low_complexity Low_complexity 3 147 0 498 170 0 0 chr6 20084774 20084868 -162330374 + CT-rich Low_complexity Low_complexity 4 97 0 647 73 31 0 chr6 20084897 20084993 -162330249 + (TTCTC)n Simple_repeat Simple_repeat 5 103 0 190 333 76 0 chr6 20084995 20085061 -162330181 - L2 LINE L2 -1 3271 3201 805 303 73 62 chr6 20085100 20085938 -162329304 + L2 LINE L2 2437 3276 -37 1034 165 170 116 chr6 20086050 20086420 -162328822 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr6 20090464 20090488 -162324754 + AT_rich Low_complexity Low_complexity 1 24 0 371 250 177 55 chr6 20091059 20091223 -162324019 + MIR3 SINE MIR 18 201 -7 307 395 93 0 chr6 20091436 20091598 -162323644 - L2 LINE L2 -15 3257 3081 2497 151 13 0 chr6 20092393 20092771 -162322471 + MSTB LTR MaLR 1 383 -43 853 336 43 37 chr6 20092943 20093428 -162321814 + MLT1H1 LTR MaLR 41 528 -27 6254 166 23 12 chr6 20093636 20095222 -162320020 + L1MC1 LINE L1 4733 6332 -1 274 242 91 0 chr6 20095351 20095417 -162319825 - MIR SINE MIR -71 191 120 383 277 6 38 chr6 20097740 20097899 -162317343 - HAL1b LINE L1 -4 1344 1191 230 234 31 0 chr6 20097959 20098023 -162317219 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 200 29 14 chr6 20098144 20098214 -162317028 + CT-rich Low_complexity Low_complexity 2 72 0 231 240 128 16 chr6 20098341 20098466 -162316776 - L1P4 LINE L1 -698 5468 5330 1205 218 4 4 chr6 20098711 20098950 -162316292 - AluJo SINE Alu -15 297 59 2583 214 50 19 chr6 20099564 20100421 -162314821 - L1ME LINE L1 -667 5566 4685 2409 263 42 46 chr6 20100432 20101638 -162313604 - L1ME LINE L1 -4386 2010 810 1039 168 0 11 chr6 20101711 20101890 -162313352 - AluSg/x SINE Alu 0 310 134 474 209 95 0 chr6 20101892 20102050 -162313192 - L1ME LINE L1 -5571 825 653 188 189 38 0 chr6 20102092 20102145 -162313097 + (CAATT)n Simple_repeat Simple_repeat 1 55 0 546 258 61 88 chr6 20102196 20102526 -162312716 - MER21B LTR ERV1 -260 603 283 1045 216 8 124 chr6 20102530 20102892 -162312350 - MLT1A2 LTR MaLR 0 374 55 314 328 0 16 chr6 20102898 20103023 -162312219 + L1MEc LINE L1 940 1062 -5334 184 367 92 31 chr6 20103239 20103337 -162311905 - L2 LINE L2 -32 3240 3137 363 321 91 24 chr6 20104055 20104220 -162311022 - MIR SINE MIR -82 180 5 397 311 0 22 chr6 20104301 20104437 -162310805 - MER5A DNA MER1_type -10 168 39 186 255 21 0 chr6 20104446 20104493 -162310749 + MER5B DNA MER1_type 125 172 -6 538 248 161 0 chr6 20104746 20104895 -162310347 + MER5B DNA MER1_type 1 173 -5 198 309 151 8 chr6 20105279 20105405 -162309837 - L2 LINE L2 -8 3305 3162 189 0 0 0 chr6 20105569 20105590 -162309652 + (CA)n Simple_repeat Simple_repeat 2 22 0 197 383 54 40 chr6 20109916 20110065 -162305177 + L2 LINE L2 3004 3154 -118 21 89 0 0 chr6 20110130 20110186 -162305056 + AT_rich Low_complexity Low_complexity 1 56 0 1846 158 24 0 chr6 20110236 20110527 -162304715 - AluJo SINE Alu -14 298 1 284 298 44 89 chr6 20110909 20111067 -162304175 - MIR SINE MIR -79 183 33 333 0 0 0 chr6 20111476 20111513 -162303729 + (TG)n Simple_repeat Simple_repeat 2 38 0 1102 210 13 18 chr6 20112110 20112339 -162302903 - MIR SINE MIR -21 241 14 309 77 0 0 chr6 20113597 20113636 -162301606 + MADE1 DNA Mariner 1 39 -41 21 36 0 0 chr6 20113651 20113679 -162301563 + AT_rich Low_complexity Low_complexity 1 28 0 404 192 346 8 chr6 20113861 20113991 -162301251 + MER5A DNA MER1_type 9 182 -7 249 33 0 0 chr6 20114133 20114163 -162301079 + (TG)n Simple_repeat Simple_repeat 2 31 0 398 287 81 34 chr6 20115779 20115988 -162299254 - MIR SINE MIR -37 225 7 1429 226 134 53 chr6 20116476 20116909 -162298333 + MLT2B1 LTR ERVL 1 468 -52 2380 178 11 104 chr6 20116914 20117482 -162297760 + MLT2B2 LTR ERVL 1 515 0 804 153 217 26 chr6 20118042 20118231 -162297011 - L1MB5 LINE L1 -14 6160 5936 13730 165 33 13 chr6 20118392 20122156 -162293086 - L1MA6 LINE L1 -9 6291 2448 1852 208 6 6 chr6 20123236 20123601 -162291641 - MLT1A1 LTR MaLR 0 365 1 313 197 15 15 chr6 20124063 20124129 -162291113 - L3 LINE CR1 -683 894 829 219 69 0 0 chr6 20124321 20124350 -162290892 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1228 177 146 16 chr6 20124360 20124614 -162290628 - AluJo SINE Alu -15 287 1 261 0 0 0 chr6 20128355 20128384 -162286858 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3236 85 32 21 chr6 20128389 20128861 -162286381 - L1PA11 LINE L1 -8 6166 5690 1758 166 42 86 chr6 20131001 20131434 -162283808 + MLT2D LTR ERVL 1 414 0 287 314 33 33 chr6 20131439 20131560 -162283682 - MIR3 SINE MIR -19 189 69 1277 175 17 115 chr6 20132304 20132721 -162282521 - L1MC4 LINE L1 0 8042 7667 204 206 9 84 chr6 20133162 20133269 -162281973 + T-rich Low_complexity Low_complexity 3 101 0 818 274 86 57 chr6 20133296 20133985 -162281257 - HAL1 LINE L1 -170 2337 1629 577 190 0 0 chr6 20133971 20134071 -162281171 + L1P4 LINE L1 2613 2712 -4137 * 2272 154 26 0 chr6 20134075 20134464 -162280778 + MER57A LTR ERV1 1 399 -4 15261 125 66 40 chr6 20134473 20136591 -162278651 + MER57A-int LTR ERV1 1 2063 -5474 322 250 0 0 chr6 20136591 20136655 -162278587 + AluJ/FRAM SINE Alu 232 295 -7 2116 116 3 13 chr6 20136657 20136960 -162278282 + AluSx SINE Alu 1 300 -12 15261 125 66 40 chr6 20136960 20137306 -162277936 + MER57A-int LTR ERV1 2063 2596 -4941 * 21185 104 19 6 chr6 20137299 20141477 -162273765 + MER57A-int LTR ERV1 2874 7122 -415 665 141 25 8 chr6 20141523 20141644 -162273598 + LTR54B LTR ERV1 5 127 -371 1385 109 118 25 chr6 20141644 20141882 -162273360 + MER57A-int LTR ERV1 7272 7531 -6 2226 178 10 0 chr6 20141887 20142286 -162272956 + MER57A LTR ERV1 1 403 0 12888 210 22 16 chr6 20142286 20143387 -162271855 + L1P4 LINE L1 2713 3806 -3062 222 59 20 39 chr6 20143387 20143438 -162271804 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 12888 210 22 16 chr6 20143438 20144017 -162271225 + L1P4 LINE L1 3806 4380 -2488 2097 106 4 0 chr6 20144017 20144290 -162270952 + AluSp SINE Alu 17 290 -23 12888 210 22 16 chr6 20144290 20146135 -162269107 + L1P4 LINE L1 4380 6253 -615 367 111 0 0 chr6 20146134 20146188 -162269054 + L1P4 LINE L1 5497 5550 -611 * 3964 156 1 10 chr6 20146189 20146862 -162268380 + L1PA15 LINE L1 5499 6165 0 214 364 10 20 chr6 20147255 20147354 -162267888 + MIR SINE MIR 53 150 -112 210 71 0 0 chr6 20147433 20147461 -162267781 + (TTA)n Simple_repeat Simple_repeat 1 28 0 323 230 64 79 chr6 20147681 20147978 -162267264 - L1MEc LINE L1 -3771 2375 2110 674 34 23 0 chr6 20148303 20148391 -162266851 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 533 319 26 35 chr6 20148475 20148707 -162266535 + L3 LINE CR1 457 686 -891 225 395 22 0 chr6 20149294 20149428 -162265814 + L3 LINE CR1 1110 1246 -331 21 36 0 0 chr6 20149785 20149813 -162265429 + AT_rich Low_complexity Low_complexity 1 28 0 185 258 17 150 chr6 20149890 20150010 -162265232 + L3 LINE CR1 1461 1564 -13 795 273 62 72 chr6 20150470 20151071 -162264171 + L1M4 LINE L1 2861 3455 -2691 22 0 0 0 chr6 20151132 20151154 -162264088 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr6 20151178 20151207 -162264035 + AT_rich Low_complexity Low_complexity 1 29 0 2111 103 0 0 chr6 20151374 20151684 -162263558 + AluSx SINE Alu 1 310 0 303 164 0 0 chr6 20151746 20151801 -162263441 + LTR19B LTR ERV1 526 580 0 452 328 129 38 chr6 20151827 20152407 -162262835 + L1M4 LINE L1 3795 4427 -1719 1815 142 22 0 chr6 20152562 20152879 -162262363 + L1MA10 LINE L1 5320 5643 -525 1674 142 48 21 chr6 20152879 20153210 -162262032 + L1MA10 LINE L1 5986 6331 -3 332 200 11 0 chr6 20153241 20153331 -162261911 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1847 170 17 0 chr6 20153333 20153621 -162261621 - AluJo SINE Alu -19 293 1 22 70 0 0 chr6 20153761 20153804 -162261438 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr6 20154325 20154358 -162260884 + AT_rich Low_complexity Low_complexity 1 33 0 207 164 60 15 chr6 20154877 20154944 -162260298 + (TA)n Simple_repeat Simple_repeat 1 70 0 1683 221 68 38 chr6 20155158 20155319 -162259923 + MER74B LTR ERVL 1 156 -466 2089 122 10 3 chr6 20155319 20155614 -162259628 + AluSg SINE Alu 1 297 -13 1683 221 68 38 chr6 20155614 20155981 -162259261 + MER74B LTR ERVL 156 545 -77 252 219 48 68 chr6 20156130 20156276 -162258966 + L1ME4a LINE L1 5945 6087 -34 1783 230 34 50 chr6 20157914 20158410 -162256832 - LTR40a LTR ERVL 0 519 32 331 155 70 0 chr6 20158410 20158481 -162256761 - LTR40a LTR ERVL -443 76 1 1323 211 46 38 chr6 20158707 20159237 -162256005 + MLT1E3 LTR MaLR 70 624 0 426 319 99 14 chr6 20159407 20159620 -162255622 - MIR SINE MIR 0 262 32 2630 46 0 0 chr6 20159625 20159931 -162255311 - AluY SINE Alu -5 306 1 946 256 78 25 chr6 20160043 20160364 -162254878 + MLT1I LTR MaLR 64 401 -8 229 386 18 9 chr6 20160438 20160552 -162254690 + L2 LINE L2 2849 2963 -309 665 245 27 33 chr6 20160564 20160748 -162254494 + MIR SINE MIR 7 189 -73 37 39 0 0 chr6 20160748 20160799 -162254443 + AT_rich Low_complexity Low_complexity 1 51 0 315 327 165 40 chr6 20160828 20161076 -162254166 + L2 LINE L2 2993 3271 -1 27 49 0 0 chr6 20162853 20162894 -162252348 + AT_rich Low_complexity Low_complexity 1 41 0 278 322 11 23 chr6 20163366 20163543 -162251699 + T-rich Low_complexity Low_complexity 4 178 0 333 0 0 0 chr6 20163615 20163652 -162251590 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 435 38 0 0 chr6 20163651 20163704 -162251538 + (TC)n Simple_repeat Simple_repeat 1 53 0 195 42 0 0 chr6 20163703 20163727 -162251515 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 202 277 0 75 chr6 20164318 20164412 -162250830 + MIR SINE MIR 54 140 -68 246 333 49 10 chr6 20165846 20165948 -162249294 - MIR3 SINE MIR -11 197 92 797 162 18 54 chr6 20166456 20166623 -162248619 + MER5A DNA MER1_type 28 188 -1 2483 74 151 5 chr6 20168187 20168578 -162246664 - LTR7 LTR ERV1 -2 448 1 2268 96 48 13 chr6 20168578 20168955 -162246287 - HERVH LTR ERV1 0 7713 7324 1285 139 19 0 chr6 20168955 20169171 -162246071 - HERVH LTR ERV1 -1894 5819 5600 4136 115 44 0 chr6 20169172 20169806 -162245436 - HERVH LTR ERV1 -2564 5149 4488 3380 86 4 6 chr6 20169808 20170311 -162244931 - HERVH LTR ERV1 -3720 3993 3492 854 142 20 0 chr6 20170301 20170449 -162244793 - HERVH LTR ERV1 -4423 3290 3140 * 18818 92 10 40 chr6 20170443 20173521 -162241721 - HERVH LTR ERV1 -4726 2987 1 2488 77 151 5 chr6 20173523 20173914 -162241328 - LTR7 LTR ERV1 -2 448 1 476 353 15 34 chr6 20174185 20174389 -162240853 + MIR SINE MIR 2 201 -61 279 325 25 0 chr6 20174487 20174567 -162240675 + L2 LINE L2 3186 3267 -5 3381 170 13 42 chr6 20175065 20175819 -162239423 - L1MB3 LINE L1 -2 6181 5450 1430 218 50 3 chr6 20175855 20176158 -162239084 + MLT1A1 LTR MaLR 49 365 0 231 152 0 0 chr6 20176203 20176249 -162238993 + CT-rich Low_complexity Low_complexity 4 49 0 3049 240 158 8 chr6 20176538 20177592 -162237650 + L1MC4 LINE L1 6459 7670 -372 333 0 0 0 chr6 20177637 20177674 -162237568 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2159 120 0 0 chr6 20177677 20177960 -162237282 - AluSx SINE Alu -29 283 1 1124 221 8 40 chr6 20177973 20178138 -162237104 - AluJb SINE Alu -18 294 138 2171 110 10 0 chr6 20178138 20178430 -162236812 - AluSx SINE Alu -17 295 1 1124 221 8 40 chr6 20178430 20178517 -162236725 - AluJb SINE Alu -174 138 50 447 257 0 0 chr6 20178572 20178685 -162236557 + L1MC4 LINE L1 7787 7899 -143 2136 190 42 6 chr6 20178960 20179455 -162235787 + L1MD3 LINE L1 7473 7985 -10 440 340 68 38 chr6 20180349 20180614 -162234628 + L1MC/D LINE L1 5512 5784 -2024 1238 182 104 17 chr6 20180684 20180981 -162234261 + MER33 DNA MER1_type 1 323 -1 991 301 68 39 chr6 20181955 20182384 -162232858 - L2 LINE L2 -1 3312 2866 1745 172 7 13 chr6 20182384 20182686 -162232556 + AluJb SINE Alu 1 300 -12 991 301 68 39 chr6 20182686 20182738 -162232504 - L2 LINE L2 -447 2866 2817 412 99 28 0 chr6 20182739 20182810 -162232432 + GA-rich Low_complexity Low_complexity 4 76 0 2093 138 0 3 chr6 20182810 20183122 -162232120 + AluSx SINE Alu 1 311 -1 574 319 168 22 chr6 20183135 20183539 -162231703 - L2 LINE L2 -445 2869 2407 2312 237 41 12 chr6 20183542 20184195 -162231047 + L1ME1 LINE L1 5486 6157 -9 2443 70 0 0 chr6 20184195 20184493 -162230749 - AluY SINE Alu -13 298 1 886 291 38 50 chr6 20184508 20184951 -162230291 - L2 LINE L2 -1573 1741 1304 3218 95 59 6 chr6 20184951 20185424 -162229818 + Charlie3 DNA MER1_type 1 498 -2212 * 3302 79 8 19 chr6 20185420 20185890 -162229352 + Charlie3 DNA MER1_type 2242 2706 -4 621 272 133 5 chr6 20185891 20186086 -162229156 - L2 LINE L2 -2004 1310 1091 359 250 0 0 chr6 20186298 20186386 -162228856 - MER63 DNA MER1_type 0 1062 975 * 385 164 0 0 chr6 20186384 20186445 -162228797 - MER63 DNA MER1_type -91 745 685 587 318 99 50 chr6 20187107 20188053 -162227189 + L2 LINE L2 2315 3313 0 341 256 128 32 chr6 20188169 20188325 -162226917 - MIR3 SINE MIR -17 191 21 268 240 144 56 chr6 20188762 20188887 -162226355 + MIR SINE MIR 121 256 -6 265 83 83 0 chr6 20189295 20189343 -162225899 + MER53 DNA DNA 1 52 -137 2385 84 0 13 chr6 20189397 20189705 -162225537 + AluSc SINE Alu 6 309 0 1751 214 84 7 chr6 20189847 20190277 -162224965 - MLT1C LTR MaLR -4 463 1 1523 191 50 3 chr6 20190927 20191209 -162224033 - AluJb SINE Alu -17 295 1 1977 143 13 3 chr6 20191718 20192018 -162223224 + AluJb SINE Alu 1 303 -9 353 280 83 15 chr6 20192956 20193088 -162222154 - L1ME4a LINE L1 -25 6096 5956 517 333 60 32 chr6 20193192 20193441 -162221801 + MIR SINE MIR 5 260 -2 631 314 82 18 chr6 20193441 20193782 -162221460 - L1ME4a LINE L1 -265 5856 5494 225 0 0 0 chr6 20193785 20193810 -162221432 + (TG)n Simple_repeat Simple_repeat 2 26 0 507 207 129 159 chr6 20194230 20194471 -162220771 + MLT1H1 LTR MaLR 112 335 -220 2030 131 0 0 chr6 20194471 20194787 -162220455 + AluSx SINE Alu 1 316 0 507 207 129 159 chr6 20194787 20195002 -162220240 + MLT1H1 LTR MaLR 335 555 0 2765 299 70 24 chr6 20197619 20199072 -162216170 + L1MEc LINE L1 35 1554 -4842 2444 76 0 0 chr6 20199202 20199505 -162215737 - AluY SINE Alu -8 303 1 2744 148 42 18 chr6 20199513 20200019 -162215223 - L1MC1 LINE L1 0 6333 5816 1021 182 5 5 chr6 20200104 20200117 -162215125 - L1MC1 LINE L1 0 6333 6321 975 106 11 17 chr6 20200117 20200296 -162214946 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1021 182 5 5 chr6 20200296 20200474 -162214768 - L1MC1 LINE L1 -11 6322 6142 252 278 74 36 chr6 20200475 20200784 -162214458 - L1MEd LINE L1 -3704 2425 2105 1042 284 116 35 chr6 20201579 20202288 -162212954 - L1MEd LINE L1 -4862 1257 492 234 256 233 57 chr6 20202494 20202670 -162212572 - L1MEd LINE L1 -5857 262 56 197 301 140 29 chr6 20202888 20203024 -162212218 + L3 LINE CR1 295 445 -1132 213 353 0 0 chr6 20203042 20203144 -162212098 + L3 LINE CR1 387 488 -1089 519 266 161 14 chr6 20203147 20203365 -162211877 + LTR16C LTR ERVL 1 250 -241 611 346 123 48 chr6 20203520 20204083 -162211159 + L3 LINE CR1 486 1120 -457 5206 124 22 15 chr6 20204083 20205093 -162210149 - L1PA16 LINE L1 -10 6156 5128 611 346 123 48 chr6 20205093 20205280 -162209962 + L3 LINE CR1 1120 1292 -285 340 291 0 0 chr6 20205304 20205383 -162209859 + L2 LINE L2 3193 3271 -1 397 282 60 0 chr6 20206655 20206772 -162208470 + MIR3 SINE MIR 83 206 -2 204 44 0 67 chr6 20209149 20209194 -162206048 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2021 160 38 24 chr6 20209646 20210070 -162205172 - MSTB1 LTR MaLR -2 430 1 971 105 29 0 chr6 20210200 20210372 -162204870 + CT-rich Low_complexity Low_complexity 3 179 0 1016 145 0 6 chr6 20210387 20210566 -162204676 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 270 71 18 36 chr6 20210573 20210629 -162204613 + (TTCCC)n Simple_repeat Simple_repeat 2 56 0 1255 227 58 7 chr6 20210633 20210924 -162204318 - AluJo SINE Alu -6 306 1 396 0 0 0 chr6 20212086 20212130 -162203112 + (GA)n Simple_repeat Simple_repeat 1 44 0 386 283 128 46 chr6 20213920 20214224 -162201018 - L1M4 LINE L1 -2439 3707 3379 1904 269 181 25 chr6 20214387 20215463 -162199779 - L2 LINE L2 -1519 1795 552 10306 221 56 10 chr6 20216144 20218084 -162197158 - L1MC1 LINE L1 0 7128 5279 198 0 0 0 chr6 20218084 20218106 -162197136 + (TTG)n Simple_repeat Simple_repeat 3 24 0 10306 221 56 10 chr6 20218106 20220042 -162195200 - L1MC1 LINE L1 -1849 5279 3072 343 279 85 95 chr6 20220083 20220388 -162194854 - HAL1 LINE L1 -37 2470 2169 242 328 49 16 chr6 20220632 20220754 -162194488 + L2 LINE L2 897 1022 -2292 339 146 0 0 chr6 20220758 20220813 -162194429 - Alu SINE Alu -3 297 243 301 139 120 148 chr6 20220809 20220854 -162194388 - MER44D DNA MER2_type -1914 573 528 * 459 35 0 0 chr6 20220854 20220911 -162194331 + (CA)n Simple_repeat Simple_repeat 1 57 0 301 139 120 148 chr6 20220911 20220973 -162194269 - MER44D DNA MER2_type -1959 528 469 282 203 89 0 chr6 20220976 20221055 -162194187 - L1MC4 LINE L1 -1344 6698 6613 311 277 0 17 chr6 20221058 20221177 -162194065 + (TA)n Simple_repeat Simple_repeat 1 117 0 2295 187 71 2 chr6 20221177 20221600 -162193642 - MER44D DNA MER2_type -98 507 1 312 292 23 23 chr6 20221642 20221813 -162193429 - L1MC1 LINE L1 -6217 206 36 1491 239 98 21 chr6 20222055 20222527 -162192715 - L1ME1 LINE L1 -20 6146 5639 359 291 48 96 chr6 20222544 20222836 -162192406 - HAL1 LINE L1 -1421 1086 809 862 173 25 0 chr6 20222843 20223005 -162192237 + L1MA7 LINE L1 5442 5607 -705 1630 143 27 10 chr6 20223043 20223343 -162191899 + L1MA7 LINE L1 5982 6286 -5 556 180 27 0 chr6 20223349 20223460 -162191782 + L1MA9 LINE L1 6163 6276 -36 190 312 22 11 chr6 20223843 20223970 -162191272 - MER5B DNA MER1_type -10 179 3 191 367 0 0 chr6 20225156 20225246 -162189996 + MER5A DNA MER1_type 90 179 -10 212 353 71 40 chr6 20225587 20225877 -162189365 - L2 LINE L2 -18 3254 2883 522 339 139 50 chr6 20225940 20227132 -162188110 - L2 LINE L2 -505 2809 1511 1154 246 121 21 chr6 20228571 20229356 -162185886 - L1MCa LINE L1 -3519 2907 2087 466 245 126 53 chr6 20229363 20229770 -162185472 - L1MCa LINE L1 -4889 1546 924 1611 196 0 11 chr6 20230061 20230346 -162184896 + AluJb SINE Alu 1 282 -30 1106 185 28 5 chr6 20232643 20232854 -162182388 + AluJo SINE Alu 87 302 -10 23 54 0 0 chr6 20232917 20232954 -162182288 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 20233473 20233496 -162181746 + AT_rich Low_complexity Low_complexity 1 23 0 337 325 16 32 chr6 20234127 20234250 -162180992 - MER5A DNA MER1_type 0 189 69 612 232 13 2 chr6 20235069 20235228 -162180014 + L1ME3 LINE L1 5856 6013 -157 839 273 31 4 chr6 20235600 20235856 -162179386 - L1ME3 LINE L1 -6 6156 5894 324 339 134 13 chr6 20235903 20236142 -162179100 - HAL1 LINE L1 -2001 506 239 254 385 0 10 chr6 20236226 20236330 -162178912 + MIR3 SINE MIR 15 117 -91 219 220 169 17 chr6 20236398 20236457 -162178785 - MIR SINE MIR -104 104 37 1560 95 63 130 chr6 20236820 20237167 -162178075 - L1MA3 LINE L1 -1 6304 5981 886 251 0 0 chr6 20237166 20237353 -162177889 + MST-int LTR MaLR 746 932 -719 * 1177 141 0 5 chr6 20237356 20237541 -162177701 + MSTA LTR MaLR 245 428 0 206 282 188 0 chr6 20237624 20237709 -162177533 - L3 LINE CR1 -85 1492 1392 1706 159 17 17 chr6 20238614 20238915 -162176327 - AluSq SINE Alu -12 301 1 1091 160 63 93 chr6 20239013 20239345 -162175897 - MER33 DNA MER1_type -2 322 1 195 311 40 14 chr6 20240146 20240220 -162175022 - MIR3 SINE MIR -27 181 106 790 245 58 5 chr6 20240553 20240804 -162174438 + L2 LINE L2 2764 3022 -291 462 114 0 0 chr6 20241319 20241389 -162173853 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr6 20241883 20241904 -162173338 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr6 20241955 20242005 -162173237 + AT_rich Low_complexity Low_complexity 1 50 0 461 263 161 10 chr6 20242808 20243013 -162172229 + MIR SINE MIR 6 241 -21 226 245 0 0 chr6 20244407 20244460 -162170782 + MLT1K LTR MaLR 524 576 -12 780 265 60 95 chr6 20244568 20245169 -162170073 + MLT1G1 LTR MaLR 16 595 0 910 170 116 76 chr6 20245653 20245943 -162169299 - L1M4 LINE L1 -650 5524 5216 515 292 119 31 chr6 20246811 20247037 -162168205 - L3 LINE CR1 -6 1571 1326 2159 87 3 7 chr6 20247347 20247634 -162167608 - AluSc SINE Alu 0 309 24 364 274 118 0 chr6 20249123 20249225 -162166017 - L2 LINE L2 0 3272 3159 447 238 30 0 chr6 20249896 20249997 -162165245 + L2 LINE L2 3169 3272 0 663 0 0 0 chr6 20250214 20250286 -162164956 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 856 150 232 36 chr6 20250303 20250523 -162164719 + AluJb SINE Alu 37 299 -13 1624 185 73 15 chr6 20250737 20251066 -162164176 + MER7A DNA MER2_type 1 346 0 338 325 8 15 chr6 20251664 20251795 -162163447 + MIR SINE MIR 31 159 -65 1380 207 51 85 chr6 20251804 20252277 -162162965 + MLT1C LTR MaLR 1 457 -10 225 214 0 0 chr6 20253106 20253148 -162162094 + (TA)n Simple_repeat Simple_repeat 1 42 0 493 288 68 18 chr6 20253251 20253414 -162161828 - MIR3 SINE MIR -23 185 15 283 313 0 0 chr6 20253458 20253538 -162161704 + MIR SINE MIR 73 152 -110 256 376 66 55 chr6 20253654 20253925 -162161317 + L2 LINE L2 2997 3270 -2 2478 59 3 0 chr6 20255245 20255551 -162159691 - AluY SINE Alu -4 307 1 32 0 0 0 chr6 20258063 20258095 -162157147 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr6 20258147 20258168 -162157074 + AT_rich Low_complexity Low_complexity 1 21 0 341 332 53 16 chr6 20258189 20258379 -162156863 + MIR3 SINE MIR 11 207 -1 875 204 36 45 chr6 20260757 20260978 -162154264 - MER20 DNA MER1_type 0 219 1 1198 50 29 19 chr6 20261772 20262210 -162153032 + (TTTC)n Simple_repeat Simple_repeat 1 616 0 261 0 0 0 chr6 20262210 20262239 -162153003 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2141 89 4 7 chr6 20262489 20262770 -162152472 + AluSp SINE Alu 1 280 -33 417 20 0 0 chr6 20262772 20262822 -162152420 + (CA)n Simple_repeat Simple_repeat 1 50 0 3059 214 39 55 chr6 20263594 20264523 -162150719 - L1MC4 LINE L1 0 8042 7129 871 237 43 91 chr6 20264524 20264816 -162150426 + L1MC4 LINE L1 6752 7028 -967 2403 98 0 0 chr6 20264816 20265143 -162150099 + L1PA11 LINE L1 5846 6172 -2 871 237 43 91 chr6 20265143 20265179 -162150063 + L1MC4 LINE L1 7028 7064 -931 227 20 61 41 chr6 20265182 20265231 -162150011 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 843 244 26 8 chr6 20265750 20265984 -162149258 - Zaphod DNA AcHobo -46 3985 3748 500 288 11 37 chr6 20265982 20266173 -162149069 - LTR16C LTR ERVL -14 477 292 * 22 70 0 0 chr6 20266590 20266633 -162148609 + AT_rich Low_complexity Low_complexity 1 43 0 336 224 101 41 chr6 20266654 20266922 -162148320 - Zaphod DNA AcHobo -3067 964 681 1847 218 49 14 chr6 20266923 20267368 -162147874 - L1MD3 LINE L1 -44 7951 7491 349 214 0 29 chr6 20267400 20267470 -162147772 - L1MD3 LINE L1 -589 7406 7339 4641 169 20 14 chr6 20267495 20267741 -162147501 - L1PB4 LINE L1 -3 6153 5910 2082 132 26 34 chr6 20267741 20268119 -162147123 - THE1C LTR MaLR 0 375 1 4641 169 20 14 chr6 20268119 20268767 -162146475 - L1PB4 LINE L1 -246 5910 5254 5547 239 44 25 chr6 20268798 20271532 -162143710 - L1PBb LINE L1 -2955 3248 355 311 333 19 38 chr6 20271687 20271846 -162143396 - L1PBb LINE L1 -5884 320 165 1101 258 39 9 chr6 20271869 20272202 -162143040 + L1ME LINE L1 5405 5747 -415 505 349 81 14 chr6 20272220 20272590 -162142652 - L2 LINE L2 -786 2528 2134 658 290 43 73 chr6 20272668 20272884 -162142358 - L2 LINE L2 -24 3289 3083 3639 152 36 12 chr6 20272884 20273569 -162141673 - L1MB3 LINE L1 -1 6182 5481 658 290 43 73 chr6 20273569 20273655 -162141587 - L2 LINE L2 -230 3083 2996 375 329 123 47 chr6 20273669 20274187 -162141055 - L2 LINE L2 -1234 2080 1480 2448 144 62 0 chr6 20274187 20274590 -162140652 - MSTA LTR MaLR 0 428 1 375 329 123 47 chr6 20274590 20274858 -162140384 - L2 LINE L2 -1834 1480 1234 1939 157 44 36 chr6 20276351 20276714 -162138528 - MER47A DNA MER2_type 0 366 1 4093 180 56 15 chr6 20276801 20277667 -162137575 - L1MC3 LINE L1 0 7785 6857 2601 142 12 23 chr6 20277667 20278098 -162137144 + MSTB LTR MaLR 1 426 0 4093 180 56 15 chr6 20278098 20278176 -162137066 - L1MC3 LINE L1 -928 6857 6784 1479 168 26 16 chr6 20278328 20278631 -162136611 + L1MC1 LINE L1 6010 6315 -18 954 215 23 27 chr6 20279963 20280182 -162135060 - MER20 DNA MER1_type -1 218 1 31 26 0 0 chr6 20280570 20280608 -162134634 + AT_rich Low_complexity Low_complexity 1 38 0 749 231 193 6 chr6 20280669 20280985 -162134257 - L1M4 LINE L1 -539 5579 5205 1668 161 77 9 chr6 20280990 20281326 -162133916 - L1MB2 LINE L1 -11 6160 5802 13166 182 10 8 chr6 20281326 20281977 -162133265 + L1PB1 LINE L1 2451 3100 -3051 2431 70 3 0 chr6 20281977 20282276 -162132966 + AluY SINE Alu 1 300 -11 13166 182 10 8 chr6 20282276 20283587 -162131655 + L1PB1 LINE L1 3100 4408 -1743 369 0 0 0 chr6 20283587 20283628 -162131614 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 13166 182 10 8 chr6 20283628 20284204 -162131038 + L1PB1 LINE L1 4408 4982 -1169 2317 112 0 0 chr6 20284204 20284508 -162130734 + AluSc SINE Alu 1 304 -5 13166 182 10 8 chr6 20284508 20285667 -162129575 + L1PB1 LINE L1 4982 6151 0 21 71 0 0 chr6 20285667 20285709 -162129533 + AT_rich Low_complexity Low_complexity 1 42 0 1444 174 15 15 chr6 20285713 20285983 -162129259 - L1MB2 LINE L1 -370 5813 5544 1072 230 92 25 chr6 20285984 20286142 -162129100 - L1M4 LINE L1 -860 5220 5074 2065 84 7 31 chr6 20286142 20286428 -162128814 - AluY SINE Alu -5 306 28 1072 230 92 25 chr6 20286428 20286704 -162128538 - L1M4 LINE L1 -1006 5074 4757 7526 96 4 20 chr6 20286708 20287783 -162127459 + MER11C LTR ERVK 1 1057 -14 991 33 8 0 chr6 20287809 20287931 -162127311 - HERVK11 LTR ERVK -1522 6431 6309 1361 224 73 19 chr6 20287932 20288410 -162126832 - L1M4 LINE L1 -1325 4755 4252 2477 129 12 37 chr6 20288416 20288916 -162126326 - L1MA8 LINE L1 -2 6289 5823 1527 49 0 0 chr6 20288916 20289101 -162126141 - L1PA3 LINE L1 -3 6152 5968 2477 129 12 37 chr6 20289101 20289334 -162125908 - L1MA8 LINE L1 -468 5823 5586 * 3981 251 105 36 chr6 20289331 20289977 -162125265 - L1M4 LINE L1 -1820 4260 3660 1578 159 0 86 chr6 20289977 20290334 -162124908 - AluSx SINE Alu 0 312 1 3981 251 105 36 chr6 20290334 20291662 -162123580 - L1M4 LINE L1 -2420 3660 2150 714 299 77 22 chr6 20291688 20292324 -162122918 - L1M4 LINE L1 -4048 2032 1362 911 259 101 29 chr6 20292371 20293126 -162122116 - L1ME LINE L1 -4820 1260 465 301 333 30 61 chr6 20293852 20294050 -162121192 - L1ME LINE L1 -5877 193 2 22 35 0 0 chr6 20294138 20294167 -162121075 + AT_rich Low_complexity Low_complexity 1 29 0 180 184 0 0 chr6 20294167 20294216 -162121026 + (CAT)n Simple_repeat Simple_repeat 1 49 0 1293 276 78 18 chr6 20294460 20295079 -162120163 + MER20B DNA MER1_type 64 719 -64 2403 104 97 32 chr6 20295722 20295757 -162119485 + MSTA LTR MaLR 1 32 -396 2661 138 78 6 chr6 20295757 20296234 -162119008 - MER9 LTR ERVK 0 511 1 2403 104 97 32 chr6 20296234 20296600 -162118642 + MSTA LTR MaLR 32 428 0 182 136 23 0 chr6 20297942 20297986 -162117256 + T-rich Low_complexity Low_complexity 2 46 0 776 125 28 23 chr6 20299082 20299258 -162115984 + CT-rich Low_complexity Low_complexity 3 179 0 736 272 60 19 chr6 20299564 20299932 -162115310 - L1ME LINE L1 -436 5734 5352 6190 149 77 15 chr6 20300045 20301195 -162114047 + Tigger3b DNA MER2_type 2 1222 -9 260 158 18 0 chr6 20301242 20301299 -162113943 + CT-rich Low_complexity Low_complexity 3 60 0 254 264 80 8 chr6 20301351 20301476 -162113766 - L1ME LINE L1 -2074 4072 3939 2689 99 22 22 chr6 20301476 20301880 -162113362 + MLT2A1 LTR ERVL 1 404 -40 729 74 0 80 chr6 20301885 20302750 -162112492 + (TA)n Simple_repeat Simple_repeat 1 795 0 239 97 28 28 chr6 20302800 20302872 -162112370 + (TA)n Simple_repeat Simple_repeat 2 73 0 372 94 0 0 chr6 20302897 20302950 -162112292 + MLT2A1 LTR ERVL 392 444 0 475 304 105 25 chr6 20303034 20303133 -162112109 - L1ME LINE L1 -637 5525 5435 2151 131 0 0 chr6 20303133 20303438 -162111804 - AluSq SINE Alu -8 305 1 475 304 105 25 chr6 20303438 20304217 -162111025 - L1ME LINE L1 -727 5435 4565 198 0 0 0 chr6 20304488 20304510 -162110732 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 432 266 128 35 chr6 20304529 20304755 -162110487 + L1MC4a LINE L1 1456 1702 -4840 893 297 111 6 chr6 20304769 20305377 -162109865 + L1MC4a LINE L1 4214 4899 -1745 304 287 84 49 chr6 20305385 20305528 -162109714 + L1MC4a LINE L1 6217 6364 -1942 2337 147 76 0 chr6 20305613 20306007 -162109235 + MSTA LTR MaLR 1 424 -4 306 329 204 0 chr6 20306547 20306684 -162108558 - MER5A DNA MER1_type -21 168 4 1032 219 71 115 chr6 20306719 20307179 -162108063 - MER66A LTR ERV1 -10 520 96 982 199 0 0 chr6 20308442 20308598 -162106644 - FAM SINE Alu -19 156 1 252 376 43 0 chr6 20309311 20309473 -162105769 + MER117 DNA MER1_type 7 175 -22 3497 141 6 0 chr6 20309537 20310061 -162105181 + MER1A DNA MER1_type 1 527 0 800 163 0 0 chr6 20310091 20310214 -162105028 + FLAM_C SINE Alu 1 123 -20 234 151 38 0 chr6 20310214 20310267 -162104975 + (TA)n Simple_repeat Simple_repeat 1 55 0 713 183 7 14 chr6 20310279 20310421 -162104821 + AluJb SINE Alu 142 282 -30 411 312 89 32 chr6 20310846 20311093 -162104149 + MIR SINE MIR 2 262 0 280 295 0 71 chr6 20311249 20311361 -162103881 + MER5A DNA MER1_type 46 149 -40 262 181 14 14 chr6 20311883 20311955 -162103287 + CT-rich Low_complexity Low_complexity 5 76 0 2043 126 36 0 chr6 20311959 20312261 -162102981 - AluSq SINE Alu 0 313 1 1940 136 61 0 chr6 20312974 20313268 -162101974 - AluSx SINE Alu 0 312 1 360 325 70 24 chr6 20313372 20313670 -162101572 + L1ME4a LINE L1 5265 5576 -2232 330 143 0 0 chr6 20314617 20314680 -162100562 + (GA)n Simple_repeat Simple_repeat 2 64 0 23 68 0 0 chr6 20314764 20314808 -162100434 + AT_rich Low_complexity Low_complexity 1 44 0 1171 200 23 111 chr6 20315241 20315636 -162099606 - MLT1A1 LTR MaLR -3 362 3 279 271 113 6 chr6 20315664 20315841 -162099401 + L1ME4a LINE L1 5758 5953 -168 318 264 50 36 chr6 20315842 20315982 -162099260 + L1ME4a LINE L1 5978 6119 -2 311 270 0 102 chr6 20316010 20316147 -162099095 - MIR SINE MIR -24 238 116 1567 161 0 8 chr6 20316578 20316832 -162098410 - AluJb SINE Alu -15 297 46 408 270 68 55 chr6 20318674 20318837 -162096405 + MER91A DNA MER1_type 1 165 -31 236 298 0 35 chr6 20318840 20318897 -162096345 + MER91A DNA MER1_type 136 190 0 1067 343 64 5 chr6 20319540 20319980 -162095262 + LTR33 LTR ERVL 33 498 -23 3499 69 7 4 chr6 20321598 20322059 -162093183 + L1PA8 LINE L1 5709 6170 -2 342 368 118 35 chr6 20323443 20323791 -162091451 + L2 LINE L2 2841 3217 -55 2080 144 119 16 chr6 20323830 20324218 -162091024 + MSTA LTR MaLR 1 428 0 13485 17 0 0 chr6 20324669 20327017 -162088225 - L1HS LINE L1 -2 6153 3805 1646 30 0 0 chr6 20327014 20327212 -162088030 + L1HS LINE L1 3607 3804 -2342 * 2241 234 36 32 chr6 20328517 20329131 -162086111 - MER77 LTR ERV1 -4 601 79 213 39 0 0 chr6 20329328 20329354 -162085888 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr6 20329494 20329522 -162085720 + AT_rich Low_complexity Low_complexity 1 28 0 4812 214 73 22 chr6 20330420 20331760 -162083482 + Charlie1a DNA MER1_type 1 1409 -46 231 36 0 0 chr6 20331901 20331929 -162083313 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1414 215 8 4 chr6 20331936 20332196 -162083046 - AluJb SINE Alu -51 261 1 209 222 22 0 chr6 20333028 20333073 -162082169 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 291 71 0 0 chr6 20333869 20333911 -162081331 + (CA)n Simple_repeat Simple_repeat 2 43 0 15293 155 20 9 chr6 20336978 20342126 -162073116 - L1MA3 LINE L1 0 7724 2567 228 333 65 0 chr6 20342345 20342468 -162072774 - L1MC5 LINE L1 -519 7442 7312 3851 23 0 0 chr6 20342686 20343129 -162072113 - L1PA4 LINE L1 -59 6096 5654 411 65 0 0 chr6 20343129 20343190 -162072052 + L1PA3 LINE L1 6094 6155 0 462 36 0 0 chr6 20343565 20343621 -162071621 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 252 213 0 0 chr6 20343757 20343818 -162071424 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 515 43 14 0 chr6 20343848 20343918 -162071324 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1270 165 187 31 chr6 20344531 20344852 -162070390 - MLT1A2 LTR MaLR 0 374 4 677 103 10 0 chr6 20349090 20349187 -162066055 + MSTB1 LTR MaLR 335 432 0 316 235 31 10 chr6 20349280 20349378 -162065864 + MER103 DNA DNA 66 165 -1 293 288 182 24 chr6 20350109 20350279 -162064963 + MIR SINE MIR 45 241 -21 2716 98 3 5 chr6 20350315 20350691 -162064551 + THE1C LTR MaLR 1 375 0 198 0 0 0 chr6 20351301 20351323 -162063919 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 420 55 0 0 chr6 20351322 20351377 -162063865 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 148 19 19 chr6 20351436 20351490 -162063752 + CT-rich Low_complexity Low_complexity 2 55 0 353 272 82 84 chr6 20352692 20353025 -162062217 - MLT1J1 LTR MaLR -71 375 20 293 298 12 0 chr6 20353550 20353634 -162061608 + L1ME LINE L1 5523 5607 -514 393 86 0 0 chr6 20353941 20353999 -162061243 + (T)n Simple_repeat Simple_repeat 1 58 0 2066 103 10 48 chr6 20354078 20354390 -162060852 - AluSq SINE Alu -13 300 1 2169 122 0 0 chr6 20356260 20356563 -162058679 - AluSx SINE Alu -5 307 5 213 343 0 0 chr6 20356708 20356775 -162058467 + L2 LINE L2 3247 3313 0 517 328 15 30 chr6 20357153 20357351 -162057891 - MIR SINE MIR -65 197 3 1273 149 61 105 chr6 20359235 20359530 -162055712 + AluJo SINE Alu 1 282 -30 210 319 112 35 chr6 20360382 20360498 -162054744 - MIR SINE MIR -46 216 92 285 375 65 5 chr6 20360697 20360881 -162054361 - L2 LINE L2 -209 3063 2869 588 286 50 14 chr6 20360881 20361101 -162054141 - MER102a DNA MER1_type -1 329 102 426 209 27 36 chr6 20361287 20361397 -162053845 + MIR3 SINE MIR 77 185 -23 1338 259 37 94 chr6 20361527 20362572 -162052670 + L1MEc LINE L1 2176 3121 -3094 3881 152 25 23 chr6 20362573 20362968 -162052274 - L1 LINE L1 -2242 3904 3506 1313 112 36 83 chr6 20362968 20363161 -162052081 - L1MA2 LINE L1 -1 6303 6125 1860 158 0 20 chr6 20363161 20363465 -162051777 - AluSx SINE Alu -10 302 5 1313 112 36 83 chr6 20363465 20363547 -162051695 - L1MA2 LINE L1 -179 6125 6041 3881 152 25 23 chr6 20363547 20363927 -162051315 - L1 LINE L1 -2640 3506 3128 3487 187 16 50 chr6 20363923 20364710 -162050532 + L1PA15 LINE L1 5400 6160 -5 * 360 0 0 0 chr6 20364732 20364772 -162050470 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 0 0 0 chr6 20364773 20364812 -162050430 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 184 0 0 chr6 20364849 20364887 -162050355 + FLAM_A SINE Alu 1 38 -95 528 144 62 0 chr6 20364889 20364986 -162050256 + AluY SINE Alu 207 309 -2 2967 126 13 2 chr6 20364988 20365463 -162049779 + L1MA6 LINE L1 5821 6300 0 1268 268 78 12 chr6 20365496 20366253 -162048989 + L1ME2 LINE L1 4872 5677 -489 439 182 8 132 chr6 20366259 20366380 -162048862 - Tigger3(Golem) DNA MER2_type -1 3028 2923 255 239 127 0 chr6 20366491 20366505 -162048737 - Tigger3(Golem) DNA MER2_type -522 80 69 2180 34 8 0 chr6 20366505 20366772 -162048470 - L1PA4 LINE L1 -3 6152 5884 255 239 127 0 chr6 20366772 20366828 -162048414 - Tigger3(Golem) DNA MER2_type -533 69 1 1082 255 38 55 chr6 20366829 20367096 -162048146 + L1ME2 LINE L1 5689 5959 -205 1040 87 12 12 chr6 20367096 20367269 -162047973 + (GGAA)n Simple_repeat Simple_repeat 3 175 0 1082 255 38 55 chr6 20367269 20367280 -162047962 + L1ME2 LINE L1 5959 5969 -195 180 0 0 0 chr6 20367280 20367300 -162047942 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 1082 255 38 55 chr6 20367300 20367490 -162047752 + L1ME2 LINE L1 5969 6150 -14 478 222 0 0 chr6 20367574 20367673 -162047569 + FLAM_A SINE Alu 44 142 0 180 176 0 0 chr6 20367730 20367764 -162047478 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 468 203 80 11 chr6 20367862 20368049 -162047193 + L1ME2 LINE L1 4317 4516 -1630 * 1793 241 65 46 chr6 20368020 20368733 -162046509 + L1ME2 LINE L1 5366 6091 -73 826 311 109 45 chr6 20368752 20369626 -162045616 + L2 LINE L2 2358 3313 0 348 261 176 29 chr6 20369691 20370032 -162045210 - L1ME4a LINE L1 -4 6117 5727 431 216 86 35 chr6 20370032 20370148 -162045094 + MIR SINE MIR 127 248 -14 361 153 222 0 chr6 20371270 20371342 -162043900 - MER3 DNA MER1_type -108 101 14 33 43 0 0 chr6 20371684 20371731 -162043511 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr6 20372519 20372560 -162042682 + (TAA)n Simple_repeat Simple_repeat 2 42 0 521 229 92 37 chr6 20372986 20373204 -162042038 - L1MC5 LINE L1 -36 7925 7696 425 233 111 33 chr6 20373217 20373397 -162041845 + L1MC5 LINE L1 7325 7518 -443 282 64 0 43 chr6 20373429 20373476 -162041766 + L1MC5 LINE L1 7603 7647 -314 264 59 0 0 chr6 20373723 20373757 -162041485 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 721 235 105 0 chr6 20374638 20374800 -162040442 - MER58A DNA MER1_type -35 189 11 2300 107 3 0 chr6 20374925 20375235 -162040007 - AluSp SINE Alu -2 311 1 277 217 0 0 chr6 20375251 20375297 -162039945 - L2 LINE L2 -27 3245 3200 182 338 14 0 chr6 20375667 20375738 -162039504 - L2 LINE L2 -527 2787 2716 1527 268 42 28 chr6 20377375 20377846 -162037396 - MER45C DNA AcHobo 0 953 476 946 213 99 116 chr6 20377847 20378280 -162036962 + LTR16A1 LTR ERVL 32 457 0 346 326 70 35 chr6 20378296 20378468 -162036774 - L2 LINE L2 -213 3100 2923 1774 228 45 45 chr6 20378510 20378979 -162036263 + MLT1D LTR MaLR 37 505 0 2619 277 106 25 chr6 20378979 20379028 -162036214 - L2 LINE L2 -378 2936 2892 2541 94 3 25 chr6 20379028 20379391 -162035851 - THE1A LTR MaLR 0 355 1 2619 277 106 25 chr6 20379391 20380419 -162034823 - L2 LINE L2 -422 2892 1772 1775 168 20 0 chr6 20380419 20380723 -162034519 - MLT2D LTR ERVL -104 310 1 35 24 0 0 chr6 20380746 20380788 -162034454 + AT_rich Low_complexity Low_complexity 1 42 0 7484 22 7 1 chr6 20380795 20381905 -162033337 - L1PA3 LINE L1 0 6155 5056 1236 288 156 13 chr6 20381928 20382564 -162032678 - L2 LINE L2 -1641 1673 947 1269 186 122 20 chr6 20382593 20382937 -162032305 + L1MC2 LINE L1 5942 6320 -24 2036 127 41 8 chr6 20383055 20383520 -162031722 + L1MA4A LINE L1 5137 5618 -682 2085 122 60 18 chr6 20383555 20383940 -162031302 + L1MA4A LINE L1 5899 6299 -4 488 326 60 18 chr6 20385220 20385502 -162029740 - L3b LINE CR1 -107 1476 1183 216 233 0 0 chr6 20385976 20386019 -162029223 - L2 LINE L2 -6 3307 3265 226 222 0 19 chr6 20386829 20386883 -162028359 - L2 LINE L2 -1 3271 3219 23 0 0 0 chr6 20387153 20387176 -162028066 + AT_rich Low_complexity Low_complexity 1 23 0 242 250 197 0 chr6 20387704 20387780 -162027462 + MIR3 SINE MIR 113 203 -5 215 386 20 20 chr6 20389683 20389784 -162025458 + L2 LINE L2 3171 3271 -1 2098 139 0 3 chr6 20390575 20390884 -162024358 + AluSg SINE Alu 1 308 -2 487 265 191 5 chr6 20390886 20391075 -162024167 + MIR SINE MIR 17 240 -22 182 264 161 23 chr6 20392184 20392271 -162022971 - L2 LINE L2 -5 3308 3210 408 288 38 23 chr6 20393995 20394127 -162021115 - MIR3 SINE MIR -21 187 54 344 264 157 0 chr6 20395180 20395320 -162019922 - MIR SINE MIR -10 252 91 464 282 74 31 chr6 20395330 20395493 -162019749 + MER91A DNA MER1_type 1 170 -26 185 167 0 7 chr6 20395894 20395928 -162019314 + L2 LINE L2 3216 3290 -23 289 296 72 56 chr6 20396160 20396285 -162018957 + L2 LINE L2 3137 3263 -9 2554 59 0 3 chr6 20397052 20397383 -162017859 - AluY SINE Alu 0 335 6 218 312 48 48 chr6 20398403 20398528 -162016714 + MIR3 SINE MIR 30 154 -54 2063 110 11 7 chr6 20398873 20399185 -162016057 - AluSx SINE Alu 0 313 1 270 231 62 69 chr6 20400750 20400910 -162014332 + MER103 DNA DNA 1 159 -7 852 175 75 0 chr6 20401213 20401373 -162013869 + MLT1B LTR MaLR 1 172 -218 248 262 0 0 chr6 20401451 20401512 -162013730 + MLT1K LTR MaLR 487 547 -41 995 216 5 20 chr6 20401635 20401834 -162013408 + MLT1B LTR MaLR 195 390 0 298 281 62 0 chr6 20402174 20402270 -162012972 + MLT1K LTR MaLR 487 588 0 368 274 5 99 chr6 20403003 20403204 -162012038 - L2 LINE L2 -5 3308 3127 1762 241 107 14 chr6 20403214 20403783 -162011459 + MLT2E LTR ERVL 7 628 0 213 336 40 24 chr6 20403792 20403917 -162011325 - L2 LINE L2 -191 3122 2996 276 30 0 0 chr6 20405050 20405083 -162010159 + (TC)n Simple_repeat Simple_repeat 2 34 0 766 176 0 23 chr6 20405083 20405214 -162010028 - FLAM_C SINE Alu -5 128 1 1127 104 203 5 chr6 20405785 20405977 -162009265 - MER30 DNA MER1_type 0 230 1 24 96 0 0 chr6 20406777 20406850 -162008392 + AT_rich Low_complexity Low_complexity 1 73 0 283 235 0 50 chr6 20407474 20407593 -162007649 + A-rich Low_complexity Low_complexity 2 114 0 630 204 43 81 chr6 20408020 20408206 -162007036 + L2 LINE L2 3135 3313 0 1292 122 23 14 chr6 20408457 20408671 -162006571 - L1MC1 LINE L1 -2 6331 6116 10345 191 15 66 chr6 20408671 20410832 -162004410 - L1PA15-16 LINE L1 -2612 4237 1969 599 137 10 0 chr6 20410832 20410934 -162004308 - AluSg/x SINE Alu -2 307 205 282 125 0 0 chr6 20410934 20410974 -162004268 - Alu SINE Alu -262 40 1 10345 191 15 66 chr6 20410974 20412000 -162003242 - L1PA15-16 LINE L1 -4878 1971 1071 2615 239 27 4 chr6 20412000 20412702 -162002540 - L1M4 LINE L1 -979 5167 4450 1158 230 32 68 chr6 20412702 20413167 -162002075 + MER74A LTR ERVL 2 528 -30 916 297 64 12 chr6 20413237 20413564 -162001678 + LTR16C LTR ERVL 99 442 -49 676 208 40 130 chr6 20413597 20413944 -162001298 - MLT1D LTR MaLR -50 455 21 304 85 0 21 chr6 20413972 20414019 -162001223 + LTR16C LTR ERVL 445 490 -1 324 198 72 18 chr6 20414955 20415122 -162000120 + (TA)n Simple_repeat Simple_repeat 2 177 0 419 282 76 0 chr6 20415148 20415279 -161999963 + MIR SINE MIR 105 245 -17 1881 256 42 19 chr6 20415743 20416285 -161998957 + MLT1H1 LTR MaLR 1 555 0 25 31 0 0 chr6 20416745 20416777 -161998465 + AT_rich Low_complexity Low_complexity 1 32 0 233 339 206 18 chr6 20417036 20417375 -161997867 + L2 LINE L2 2225 2627 -687 1981 271 70 44 chr6 20417555 20418620 -161996622 - L1ME3A LINE L1 -9 6161 5125 1681 194 3 7 chr6 20418620 20418913 -161996329 + AluJb SINE Alu 1 292 -20 1981 271 70 44 chr6 20418913 20419047 -161996195 - L1ME3A LINE L1 -1045 5125 4996 2612 52 0 0 chr6 20419047 20419356 -161995886 + AluY SINE Alu 3 311 0 1981 271 70 44 chr6 20419356 20419597 -161995645 - L1ME3A LINE L1 -1174 4996 4763 2256 103 0 3 chr6 20419597 20419899 -161995343 - AluSx SINE Alu -11 301 1 1981 271 70 44 chr6 20419899 20420105 -161995137 - L1ME3A LINE L1 -1407 4763 4469 345 400 63 44 chr6 20420159 20420558 -161994684 + L2 LINE L2 2835 3244 -28 1828 149 7 40 chr6 20420558 20420860 -161994382 + AluJo SINE Alu 1 292 -20 345 400 63 44 chr6 20420860 20420890 -161994352 + L2 LINE L2 3244 3272 0 235 309 107 62 chr6 20421107 20421285 -161993957 + MER5A DNA MER1_type 2 187 -2 309 26 0 0 chr6 20421846 20421884 -161993358 + (TG)n Simple_repeat Simple_repeat 2 39 0 577 228 64 29 chr6 20423267 20423438 -161991804 - MER5B DNA MER1_type 0 178 2 419 242 59 113 chr6 20423454 20423640 -161991602 + MER5B DNA MER1_type 1 176 -2 342 333 41 20 chr6 20424271 20424466 -161990776 - MIR SINE MIR -30 232 34 1606 210 100 30 chr6 20425299 20425771 -161989471 - MLT1D LTR MaLR 0 505 1 696 267 78 62 chr6 20427355 20427613 -161987629 + MLT1H LTR MaLR 1 262 -287 1012 277 139 7 chr6 20427714 20428417 -161986825 + L1ME1 LINE L1 1949 2702 -3513 1447 249 121 14 chr6 20428428 20428461 -161986781 + L1ME1 LINE L1 5601 5629 -606 414 0 0 0 chr6 20428461 20428507 -161986735 + (TA)n Simple_repeat Simple_repeat 2 47 0 2121 111 3 3 chr6 20428517 20428806 -161986436 - AluSg SINE Alu -21 289 1 1447 249 121 14 chr6 20428806 20429334 -161985908 + L1ME1 LINE L1 5637 6207 -28 340 336 14 42 chr6 20429884 20430027 -161985215 - L2 LINE L2 -944 2370 2232 246 62 0 0 chr6 20430365 20430397 -161984845 + (CA)n Simple_repeat Simple_repeat 2 33 0 714 268 61 58 chr6 20432673 20432986 -161982256 - MER102a DNA MER1_type -16 314 1 260 270 16 0 chr6 20433029 20433092 -161982150 + GA-rich Low_complexity Low_complexity 1 64 0 1838 84 26 4 chr6 20433123 20433396 -161981846 - L1MA1 LINE L1 0 6302 6024 340 283 9 0 chr6 20433559 20433665 -161981577 - L1M4 LINE L1 -1155 4991 4885 358 122 40 0 chr6 20433748 20433822 -161981420 + GA-rich Low_complexity Low_complexity 1 77 0 277 250 134 0 chr6 20433824 20433936 -161981306 - L1M4 LINE L1 -1316 4830 4704 1467 269 65 11 chr6 20434070 20434590 -161980652 + L1ME3A LINE L1 5615 6162 -8 296 100 0 20 chr6 20434950 20435000 -161980242 + (TTTCC)n Simple_repeat Simple_repeat 2 50 0 391 339 94 29 chr6 20435665 20435910 -161979332 - LTR16C LTR ERVL -110 381 121 314 356 43 12 chr6 20436126 20436289 -161978953 + MER5A DNA MER1_type 17 184 -5 201 129 0 0 chr6 20437386 20437417 -161977825 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 132 0 0 chr6 20437794 20437832 -161977410 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2955 128 43 63 chr6 20437835 20438373 -161976869 + MER1A DNA MER1_type 1 527 0 354 257 180 11 chr6 20438690 20438873 -161976369 - L1ME3A LINE L1 -321 5849 5636 1146 180 31 0 chr6 20438873 20439067 -161976175 - MER20 DNA MER1_type 0 219 20 705 277 88 20 chr6 20439068 20439538 -161975704 - L1ME3A LINE L1 -518 5644 5146 24 77 0 0 chr6 20439538 20439590 -161975652 + AT_rich Low_complexity Low_complexity 1 52 0 837 246 22 18 chr6 20439663 20439891 -161975351 + MLT1F LTR MaLR 143 371 -171 631 174 0 9 chr6 20439910 20440019 -161975223 + MLT1A1 LTR MaLR 42 149 -216 441 215 47 67 chr6 20440007 20440156 -161975086 + MLT1F LTR MaLR 422 567 0 * 267 271 33 74 chr6 20440955 20441077 -161974165 + MIR3 SINE MIR 87 203 -5 225 0 0 0 chr6 20441097 20441122 -161974120 + (A)n Simple_repeat Simple_repeat 1 25 0 1471 226 22 38 chr6 20441294 20441505 -161973737 + MLT1A1 LTR MaLR 1 205 -160 1878 150 0 33 chr6 20441505 20441805 -161973437 - AluJo SINE Alu -22 290 1 1471 226 22 38 chr6 20441805 20441964 -161973278 + MLT1A1 LTR MaLR 205 365 0 2347 111 0 0 chr6 20443200 20443506 -161971736 - AluSg SINE Alu -4 306 1 195 261 136 23 chr6 20443877 20443965 -161971277 + MIR3 SINE MIR 103 200 -8 521 190 26 113 chr6 20443978 20444173 -161971069 + MER104 DNA MER2_type 2 179 -1 342 220 53 83 chr6 20444686 20444818 -161970424 - L2 LINE L2 -216 3056 2929 2217 124 0 9 chr6 20444915 20445230 -161970012 - AluSq SINE Alu -1 312 1 624 163 255 0 chr6 20445638 20445791 -161969451 + L1M4 LINE L1 2330 2521 -3625 575 341 143 19 chr6 20445915 20446340 -161968902 + MLT1K LTR MaLR 97 574 -14 364 309 12 49 chr6 20451065 20451227 -161964015 + MIR SINE MIR 3 158 -104 1261 244 15 66 chr6 20451240 20451634 -161963608 - MLT1A2 LTR MaLR 0 374 1 3341 195 32 9 chr6 20451634 20452264 -161962978 - MER82 DNA MER2_type -9 644 1 1487 204 56 36 chr6 20452331 20452435 -161962807 - MLT1A1 LTR MaLR 0 365 265 2448 124 53 17 chr6 20452435 20452847 -161962395 + MSTA LTR MaLR 1 427 -1 1487 204 56 36 chr6 20452847 20453100 -161962142 - MLT1A1 LTR MaLR -100 265 1 599 248 94 20 chr6 20453760 20453962 -161961280 + MIR SINE MIR 15 231 -31 293 276 134 65 chr6 20454252 20454513 -161960729 - MLT1I LTR MaLR -10 399 121 272 345 11 11 chr6 20454743 20454830 -161960412 - L2 LINE L2 -45 3227 3141 188 329 157 0 chr6 20454920 20454990 -161960252 + MIR SINE MIR 32 112 -150 318 26 0 0 chr6 20454993 20455032 -161960210 + (TG)n Simple_repeat Simple_repeat 2 40 0 222 37 0 0 chr6 20455032 20455059 -161960183 + (CA)n Simple_repeat Simple_repeat 2 28 0 1278 173 145 9 chr6 20455065 20455383 -161959859 + MER46B DNA MER2_type 1 236 0 207 0 0 0 chr6 20457383 20457406 -161957836 + (CA)n Simple_repeat Simple_repeat 2 24 0 225 329 35 0 chr6 20457417 20457502 -161957740 + MIR3 SINE MIR 100 187 -21 225 0 0 0 chr6 20458585 20458610 -161956632 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 5800 145 41 14 chr6 20458639 20459678 -161955564 - L1MC1 LINE L1 -2 6611 5544 478 231 0 38 chr6 20459786 20459972 -161955270 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 7702 245 46 20 chr6 20460045 20460675 -161954567 - L1MC1 LINE L1 -890 5536 4924 2234 99 0 34 chr6 20460675 20460997 -161954245 - AluY SINE Alu 0 311 1 7702 245 46 20 chr6 20460997 20463186 -161952056 - L1MC1 LINE L1 -1502 4924 2551 468 0 0 0 chr6 20463186 20463238 -161952004 + (TG)n Simple_repeat Simple_repeat 2 53 0 7702 245 46 20 chr6 20463238 20463613 -161951629 - L1MC1 LINE L1 -3875 2551 2187 1247 183 32 67 chr6 20463645 20464027 -161951215 + MLT1A1 LTR MaLR 4 428 0 1668 144 32 16 chr6 20464027 20464510 -161950732 - L1MC1 LINE L1 -4418 2008 1425 836 355 27 34 chr6 20464519 20464961 -161950281 + L1PA15 LINE L1 788 1226 -6348 11450 239 26 23 chr6 20465612 20465822 -161949420 + L1PA15 LINE L1 2237 2445 -5139 973 18 0 0 chr6 20465822 20465932 -161949310 + L1PA2 LINE L1 6034 6143 -12 207 0 0 0 chr6 20465935 20465958 -161949284 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 11450 239 26 23 chr6 20465958 20466522 -161948720 + L1PA15 LINE L1 2446 3007 -4577 2671 132 24 5 chr6 20466522 20466939 -161948303 - MSTA LTR MaLR -3 425 1 11450 239 26 23 chr6 20466939 20470083 -161945159 + L1PA15 LINE L1 3007 6165 -1419 1360 165 114 22 chr6 20470083 20470356 -161944886 + MSTA LTR MaLR 1 298 -130 5474 168 16 6 chr6 20470377 20471742 -161943500 + L1PA15 LINE L1 6178 7556 -47 3506 109 35 11 chr6 20471742 20472308 -161942934 + L1MA3 LINE L1 5726 6305 0 5474 168 16 6 chr6 20472308 20472354 -161942888 + L1PA15 LINE L1 7556 7600 -3 2156 193 12 14 chr6 20472558 20472972 -161942270 - L1MCa LINE L1 -5973 453 41 21 0 0 0 chr6 20473729 20473750 -161941492 + AT_rich Low_complexity Low_complexity 1 21 0 454 309 18 30 chr6 20474149 20474317 -161940925 - MER5B DNA MER1_type -12 166 1 240 154 13 90 chr6 20474846 20474924 -161940318 + L1MC4 LINE L1 6650 6721 -1321 732 172 8 15 chr6 20474983 20475117 -161940125 - FLAM_C SINE Alu 0 133 1 3698 145 31 9 chr6 20475849 20476503 -161938739 - L1MC1 LINE L1 -2 6331 5664 5760 62 1 5 chr6 20476504 20477250 -161937992 - L1PA8 LINE L1 -2 6170 5428 245 163 0 0 chr6 20477251 20477294 -161937948 - L1MC1 LINE L1 -684 5660 5618 463 246 49 49 chr6 20478234 20478437 -161936805 + MLT1J LTR MaLR 300 502 -9 1444 180 3 84 chr6 20478639 20478962 -161936280 - AluJo SINE Alu -15 297 1 248 272 25 0 chr6 20479379 20479460 -161935782 + L1MA9 LINE L1 6192 6274 -38 201 316 18 0 chr6 20479602 20479659 -161935583 + L2 LINE L2 3254 3311 -2 696 222 23 77 chr6 20480520 20480741 -161934501 + MER63A DNA MER1_type 1 209 -1 1664 182 12 87 chr6 20482539 20482941 -161932301 - MLT1A2 LTR MaLR 0 374 3 470 315 67 17 chr6 20483388 20483566 -161931676 - MIR3 SINE MIR -21 187 1 26 0 0 0 chr6 20485035 20485061 -161930181 + AT_rich Low_complexity Low_complexity 1 26 0 1064 238 135 81 chr6 20485363 20486485 -161928757 + HAL1b LINE L1 105 1286 -62 1564 192 76 38 chr6 20486706 20487128 -161928114 + L1MA4 LINE L1 13 450 -7115 11514 197 62 34 chr6 20487130 20488966 -161926276 + L1MA4 LINE L1 2007 3792 -3927 2272 146 72 12 chr6 20488966 20489370 -161925872 + MSTA LTR MaLR 1 428 0 11514 197 62 34 chr6 20489370 20490628 -161924614 + L1MA4 LINE L1 3792 5014 -2705 2455 87 0 0 chr6 20490628 20490939 -161924303 + AluY SINE Alu 1 311 0 11514 197 62 34 chr6 20490939 20493316 -161921926 + L1MA4 LINE L1 5014 7718 -1 226 306 28 0 chr6 20493645 20493717 -161921525 - MLT1I LTR MaLR -2 407 334 2463 49 0 20 chr6 20493760 20494066 -161921176 + AluY SINE Alu 1 300 -11 336 315 92 45 chr6 20494067 20494176 -161921066 - MLT1J2 LTR MaLR -128 322 220 1915 151 39 21 chr6 20494176 20494507 -161920735 + MER1B DNA MER1_type 1 337 0 336 315 92 45 chr6 20494507 20494689 -161920553 - MLT1J2 LTR MaLR -230 220 17 3568 232 68 51 chr6 20495011 20496280 -161918962 + L1MB7 LINE L1 3360 4649 -1497 3242 188 113 32 chr6 20496279 20497391 -161917851 + L1MB7 LINE L1 4963 6153 -31 * 21 57 0 0 chr6 20497680 20497715 -161917527 + AT_rich Low_complexity Low_complexity 1 35 0 600 347 34 18 chr6 20498780 20499034 -161916208 - MIR SINE MIR 0 262 6 27 29 0 0 chr6 20503005 20503039 -161912203 + AT_rich Low_complexity Low_complexity 1 34 0 545 333 139 17 chr6 20503360 20503900 -161911342 - L2 LINE L2 -22 3291 2682 1691 238 62 34 chr6 20504047 20504624 -161910618 + L1ME3 LINE L1 5572 6161 -1 572 253 159 20 chr6 20504800 20505045 -161910197 - HAL1 LINE L1 -832 1675 1397 1160 210 81 23 chr6 20505057 20505616 -161909626 - MLT1E1 LTR MaLR -3 651 2 2124 100 19 23 chr6 20505635 20505977 -161909265 - AluSc SINE Alu 0 341 1 21 0 0 0 chr6 20506156 20506177 -161909065 + AT_rich Low_complexity Low_complexity 1 21 0 367 279 174 40 chr6 20506303 20506579 -161908663 - HAL1 LINE L1 -1385 1122 810 1503 172 16 62 chr6 20506763 20507083 -161908159 - AluJo SINE Alu -7 305 1 183 309 111 12 chr6 20508460 20508541 -161906701 + MIR SINE MIR 23 111 -151 207 277 0 0 chr6 20508613 20508660 -161906582 + MIR SINE MIR 216 262 0 2008 208 92 45 chr6 20508739 20509375 -161905867 - MLT1E2 LTR MaLR -3 623 2 264 281 115 10 chr6 20509789 20509885 -161905357 - MIR SINE MIR -111 151 46 23 68 0 0 chr6 20510307 20510351 -161904891 + AT_rich Low_complexity Low_complexity 1 44 0 2399 51 0 38 chr6 20510539 20510853 -161904389 + AluY SINE Alu 1 302 -9 1505 166 3 108 chr6 20511202 20511545 -161903697 - AluJo SINE Alu -5 307 1 720 269 115 8 chr6 20511603 20511837 -161903405 - MIR SINE MIR -2 260 2 901 235 4 25 chr6 20512031 20512269 -161902973 + MER106A DNA MER1_type 1 233 -3 2515 164 31 0 chr6 20512956 20513407 -161901835 - LTR40c LTR ERVL 0 465 1 1438 191 12 8 chr6 20513707 20513964 -161901278 + AluJo SINE Alu 35 292 -20 23 54 0 0 chr6 20514274 20514311 -161900931 + AT_rich Low_complexity Low_complexity 1 37 0 343 269 149 0 chr6 20516440 20516574 -161898668 - L2 LINE L2 -1 3312 3159 3295 246 78 99 chr6 20516779 20517717 -161897525 + L1MB7 LINE L1 1360 2316 -5180 2140 114 0 29 chr6 20517717 20518033 -161897209 + AluSc SINE Alu 3 309 0 3295 246 78 99 chr6 20518033 20518087 -161897155 + L1MB7 LINE L1 2316 2370 -5126 193 29 29 29 chr6 20518087 20518122 -161897120 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3295 246 78 99 chr6 20518122 20518721 -161896521 + L1MB7 LINE L1 2370 2919 -4577 725 210 18 6 chr6 20518716 20518883 -161896359 + L1P LINE L1 3371 3539 -2607 * 4283 182 5 13 chr6 20518883 20519724 -161895518 + L1P LINE L1 3754 4587 -1559 21 36 0 0 chr6 20519724 20519752 -161895490 + AT_rich Low_complexity Low_complexity 1 28 0 5822 59 8 1 chr6 20519752 20520495 -161894747 - L1PA7 LINE L1 -4 6150 5403 1516 228 59 17 chr6 20520497 20520905 -161894337 + L1MB7 LINE L1 2981 3405 -4161 1551 223 41 31 chr6 20520912 20521570 -161893672 + L1MB7 LINE L1 3308 3980 -3585 2247 157 36 38 chr6 20521591 20522094 -161893148 - L1MA7 LINE L1 -7 6488 5987 236 278 22 22 chr6 20522152 20522242 -161893000 - L1MC4 LINE L1 -1339 6703 6614 189 107 0 0 chr6 20522270 20522298 -161892944 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 227 130 43 0 chr6 20522299 20522345 -161892897 - LTR66 LTR ERVL -171 439 392 7859 190 23 26 chr6 20522439 20522460 -161892782 - L1MA7 LINE L1 -498 5997 5977 183 80 0 0 chr6 20522460 20522485 -161892757 + (CA)n Simple_repeat Simple_repeat 2 26 0 7859 190 23 26 chr6 20522485 20523107 -161892135 - L1MA7 LINE L1 -518 5977 5355 387 105 0 0 chr6 20523107 20523164 -161892078 + (TG)n Simple_repeat Simple_repeat 2 58 0 7859 190 23 26 chr6 20523164 20523901 -161891341 - L1MA7 LINE L1 -1140 5355 4617 6193 87 25 14 chr6 20523901 20524538 -161890704 + L1PA10 LINE L1 4850 5479 -689 2075 148 0 0 chr6 20524538 20524836 -161890406 + AluSx SINE Alu 1 298 -14 6193 87 25 14 chr6 20524836 20525506 -161889736 + L1PA10 LINE L1 5479 6167 -1 7859 190 23 26 chr6 20525506 20526313 -161888929 - L1MA7 LINE L1 -1878 4617 3818 2279 228 22 17 chr6 20526304 20527066 -161888176 - L1MA7 LINE L1 -3337 3013 2247 * 242 229 14 0 chr6 20527068 20527138 -161888104 + CT-rich Low_complexity Low_complexity 1 71 0 871 122 6 33 chr6 20527148 20527329 -161887913 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1696 146 15 0 chr6 20527347 20527621 -161887621 - AluJb SINE Alu -34 278 1 3096 303 72 41 chr6 20527624 20530130 -161885112 - L1MA7 LINE L1 -4066 2284 53 8625 194 34 27 chr6 20530227 20530980 -161884262 + L1MB7 LINE L1 3966 4713 -2852 6549 76 18 1 chr6 20530980 20532439 -161882803 + L1PA10 LINE L1 4678 6154 -14 8625 194 34 27 chr6 20532439 20533727 -161881515 + L1MB7 LINE L1 4713 6020 -1545 280 254 8 57 chr6 20533721 20533843 -161881399 + L1MC4 LINE L1 6589 6704 -1338 * 291 119 45 0 chr6 20533844 20533911 -161881331 + (TA)n Simple_repeat Simple_repeat 1 70 0 230 190 17 0 chr6 20533952 20534010 -161881232 - L1MCa LINE L1 -4362 2064 2006 533 160 84 0 chr6 20534141 20534260 -161880982 + L1MB7 LINE L1 6015 6143 -1422 347 207 186 41 chr6 20534327 20534472 -161880770 + L1MEc LINE L1 2184 2349 -4047 2328 158 109 23 chr6 20534490 20535014 -161880228 - LTR49 LTR ERV1 -26 569 1 887 274 94 34 chr6 20535016 20535601 -161879641 + L1MEc LINE L1 2308 2927 -3288 263 165 107 58 chr6 20535909 20536012 -161879230 + LTR26 LTR ERV1 465 572 -31 259 243 45 9 chr6 20536058 20536169 -161879073 + L1MEc LINE L1 2890 3004 -3211 1627 263 21 24 chr6 20536170 20536809 -161878433 + L1MC1 LINE L1 1469 2248 -4315 2567 213 46 15 chr6 20536831 20537582 -161877660 + L1MB7 LINE L1 6568 7345 -258 286 284 29 10 chr6 20537582 20537684 -161877558 - MER94 DNA DNA -30 104 1 3042 45 3 0 chr6 20538581 20538956 -161876286 + L1PA8 LINE L1 5795 6170 -2 5492 188 32 11 chr6 20539579 20541182 -161874060 + L1MC1 LINE L1 4930 6564 -5 1411 82 0 0 chr6 20541618 20541802 -161873440 + AluY SINE Alu 124 307 -4 3764 173 102 98 chr6 20541839 20542352 -161872890 + L1MC3 LINE L1 6335 6845 -940 180 0 0 0 chr6 20542352 20542372 -161872870 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3764 173 102 98 chr6 20542372 20542578 -161872664 + L1MC3 LINE L1 6845 7049 -736 324 287 0 10 chr6 20542578 20542679 -161872563 + MLT1F1 LTR MaLR 26 125 -442 3764 173 102 98 chr6 20542679 20543011 -161872231 + L1MC3 LINE L1 7049 7495 -290 2031 148 0 6 chr6 20543011 20543322 -161871920 + AluSg SINE Alu 2 310 0 3764 173 102 98 chr6 20543322 20543521 -161871721 + L1MC3 LINE L1 7495 7692 -93 691 210 0 21 chr6 20543499 20543642 -161871600 + L1MC3 LINE L1 7207 7346 -439 * 381 119 95 24 chr6 20543648 20543732 -161871510 + L1MC2 LINE L1 6255 6344 0 12221 20 1 0 chr6 20544122 20545553 -161869689 + L1P LINE L1 3370 4801 -1345 488 260 11 14 chr6 20595768 20595879 -161819363 - MER5A DNA MER1_type 0 189 67 2256 107 0 7 chr6 20595879 20596178 -161819064 + AluSx SINE Alu 1 297 -15 488 260 11 14 chr6 20596178 20596209 -161819033 - MER5A DNA MER1_type -122 67 37 1904 162 0 7 chr6 20597708 20597992 -161817250 + AluJb SINE Alu 1 282 -30 287 253 55 28 chr6 20598065 20598247 -161816995 - L1ME4a LINE L1 0 6121 5935 611 281 151 54 chr6 20598559 20599068 -161816174 - L2 LINE L2 0 3313 2855 186 43 0 0 chr6 20599068 20599091 -161816151 + (GAAAA)n Simple_repeat Simple_repeat 5 27 0 611 281 151 54 chr6 20599091 20599171 -161816071 - L2 LINE L2 -458 2855 1893 523 186 144 121 chr6 20599860 20600124 -161815118 - LTR16C LTR ERVL 0 491 222 374 237 47 39 chr6 20600581 20600756 -161814486 - MLT1I LTR MaLR -4 405 244 1297 202 130 55 chr6 20600844 20601350 -161813892 - LTR10B LTR ERV1 -3 544 1 306 155 113 0 chr6 20601392 20601463 -161813779 - MLT1J2 LTR MaLR -305 145 67 326 346 39 0 chr6 20601756 20601860 -161813382 - MIR3 SINE MIR -48 160 53 298 330 104 0 chr6 20602536 20602642 -161812600 + MIR3 SINE MIR 89 205 -3 357 305 98 98 chr6 20602937 20603219 -161812023 - L2 LINE L2 -3 3269 2985 2373 103 3 0 chr6 20603219 20603521 -161811721 + AluSp SINE Alu 1 303 -10 357 305 98 98 chr6 20603521 20603553 -161811689 - L2 LINE L2 -286 2986 2955 616 254 87 0 chr6 20603594 20603767 -161811475 + MIR SINE MIR 63 250 -12 459 306 23 68 chr6 20603791 20604056 -161811186 - L2 LINE L2 -823 2491 2239 1368 99 0 11 chr6 20604224 20604406 -161810836 - AluSc SINE Alu 0 309 130 213 39 0 0 chr6 20604530 20604556 -161810686 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr6 20604750 20604773 -161810469 + AT_rich Low_complexity Low_complexity 1 23 0 1379 135 13 9 chr6 20605440 20605669 -161809573 + MSTA LTR MaLR 187 416 -12 2403 52 0 3 chr6 20605692 20605982 -161809260 - AluY SINE Alu -22 289 1 430 288 16 47 chr6 20606402 20606722 -161808520 + L1MEd LINE L1 1019 1328 -4877 1035 305 76 49 chr6 20607402 20607896 -161807346 + L1MEd LINE L1 2213 2702 -3513 1601 186 13 26 chr6 20607896 20608202 -161807040 + AluJo SINE Alu 5 306 -6 1035 305 76 49 chr6 20608202 20608593 -161806649 + L1MEd LINE L1 2702 3081 -3134 519 267 64 30 chr6 20608750 20608952 -161806290 + LTR33 LTR ERVL 301 509 -12 24 0 0 0 chr6 20609327 20609351 -161805891 + AT_rich Low_complexity Low_complexity 1 24 0 292 256 45 77 chr6 20612283 20612439 -161802803 - MIR SINE MIR -72 190 40 385 264 0 0 chr6 20613906 20613993 -161801249 - Tigger5 DNA MER2_type 0 2323 2237 265 204 19 0 chr6 20614003 20614057 -161801185 - Tigger5 DNA MER2_type -2268 55 1 343 284 83 89 chr6 20617303 20617365 -161797877 + HAL1b LINE L1 83 144 -1204 2068 165 0 0 chr6 20617365 20617674 -161797568 + AluSx SINE Alu 1 309 -3 343 284 83 89 chr6 20617674 20618641 -161796601 + HAL1b LINE L1 144 1106 -242 5878 141 11 3 chr6 20618663 20619356 -161795886 - L1PA13 LINE L1 0 6814 6128 2342 104 7 0 chr6 20619356 20619665 -161795577 + AluSq SINE Alu 1 311 -2 5878 141 11 3 chr6 20619665 20622074 -161793168 - L1PA13 LINE L1 -686 6128 3510 2218 116 41 36 chr6 20622074 20622436 -161792806 - THE1B LTR MaLR 0 364 1 8877 112 112 2 chr6 20622436 20623860 -161791382 - THE1B-int LTR MaLR 0 1580 1 2137 114 44 39 chr6 20623860 20624220 -161791022 - THE1B LTR MaLR 0 364 3 9893 207 54 12 chr6 20624223 20627505 -161787737 - L1PA13 LINE L1 -3284 3513 79 1998 234 56 34 chr6 20627551 20628232 -161787010 - L1ME1 LINE L1 0 6166 5471 1745 193 3 6 chr6 20628256 20628567 -161786675 + AluJb SINE Alu 3 312 0 2300 160 14 17 chr6 20628583 20628996 -161786246 + L1PA16 LINE L1 5746 6157 -9 310 229 121 60 chr6 20629036 20629050 -161786192 + HAL1b LINE L1 1171 1183 -165 194 0 39 0 chr6 20629050 20629076 -161786166 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 310 229 121 60 chr6 20629076 20629227 -161786015 + HAL1b LINE L1 1183 1346 -2 238 316 0 0 chr6 20629257 20629352 -161785890 - L1ME LINE L1 -303 5818 5724 300 342 58 32 chr6 20629410 20629565 -161785677 - L1ME LINE L1 -515 5606 5448 5721 128 16 0 chr6 20629653 20630658 -161784584 - L1PA15 LINE L1 -7 6158 5155 4305 208 84 18 chr6 20630658 20631606 -161783636 - L1PA13 LINE L1 -4550 2237 1200 2118 131 137 13 chr6 20631606 20631987 -161783255 + MSTA LTR MaLR 1 428 0 4305 208 84 18 chr6 20631987 20632172 -161783070 - L1PA13 LINE L1 -5587 1200 1029 1707 254 16 70 chr6 20632493 20633165 -161782077 - L1PA13 LINE L1 -5871 916 281 4190 205 65 13 chr6 20633170 20633905 -161781337 - L1MC3 LINE L1 -743 5403 5491 1330 142 93 123 chr6 20633905 20634369 -161780873 + LTR7 LTR ERV1 1 450 0 4190 205 65 13 chr6 20634369 20635060 -161780182 - L1MC3 LINE L1 -654 5492 4839 1073 258 56 20 chr6 20635066 20635461 -161779781 - L1MCb LINE L1 -5596 449 41 1664 127 79 17 chr6 20635464 20635839 -161779403 - LTR7 LTR ERV1 0 450 1 2085 84 87 3 chr6 20636604 20636890 -161778352 - AluY SINE Alu -1 310 1 21 82 0 0 chr6 20636890 20636939 -161778303 + AT_rich Low_complexity Low_complexity 1 49 0 415 264 61 61 chr6 20637288 20637451 -161777791 + MIR SINE MIR 100 262 0 332 221 108 64 chr6 20637469 20637673 -161777569 + L2 LINE L2 3049 3261 -52 335 218 73 57 chr6 20637750 20637874 -161777368 - L1ME4a LINE L1 -42 6079 5954 309 303 148 7 chr6 20637879 20638034 -161777208 - L1ME4a LINE L1 -204 5917 5741 356 289 175 0 chr6 20638103 20638217 -161777025 - L2 LINE L2 0 3313 3180 206 389 46 28 chr6 20639405 20639513 -161775729 - L2 LINE L2 0 3272 3163 24 0 0 0 chr6 20640033 20640057 -161775185 + AT_rich Low_complexity Low_complexity 1 24 0 2922 156 35 22 chr6 20640254 20640793 -161774449 + MER44D DNA MER2_type 4 604 -1 23 54 0 0 chr6 20641306 20641343 -161773899 + AT_rich Low_complexity Low_complexity 1 37 0 254 331 225 0 chr6 20641839 20642008 -161773234 - MIR SINE MIR -51 211 5 41419 42 4 3 chr6 20642188 20648340 -161766902 + L1PA4 LINE L1 3 6155 0 252 0 0 0 chr6 20648458 20648486 -161766756 + (A)n Simple_repeat Simple_repeat 1 28 0 437 259 189 5 chr6 20648559 20648771 -161766471 - MIR SINE MIR -1 261 11 630 254 82 37 chr6 20649371 20649725 -161765517 - L1MC4a LINE L1 -1865 5943 5574 315 259 85 37 chr6 20649953 20650142 -161765100 - L1MC4a LINE L1 -2260 5548 5351 1257 329 114 29 chr6 20650624 20651188 -161764054 - L1MC4a LINE L1 -1712 4434 3920 4453 172 29 16 chr6 20651188 20652099 -161763143 - L1MA10 LINE L1 -7 6327 5406 1257 329 114 29 chr6 20652099 20652683 -161762559 - L1MC4a LINE L1 -2226 3920 3188 820 285 88 0 chr6 20652724 20652987 -161762255 - MER58 DNA MER1_type -54 2366 2 515 301 49 24 chr6 20654879 20655125 -161760117 - MLT1I LTR MaLR -1 408 157 1508 228 55 36 chr6 20655782 20656409 -161758833 + L1MCc LINE L1 993 1634 -4851 782 173 7 0 chr6 20656409 20656548 -161758694 - MLT1B LTR MaLR 0 390 251 2982 258 73 22 chr6 20656604 20659038 -161756204 + L1MCc LINE L1 1647 4375 -2566 2676 287 58 14 chr6 20659077 20659973 -161755269 + L1M4b LINE L1 13 947 -5912 23565 144 24 39 chr6 20659985 20664708 -161750534 + L1PA8 LINE L1 12 4661 -1485 6749 68 7 6 chr6 20664708 20665979 -161749263 + L1PA8 LINE L1 4909 6161 -11 2074 246 75 46 chr6 20665996 20667583 -161747659 + L1M4b LINE L1 936 2703 -4435 430 204 53 9 chr6 20667846 20667959 -161747283 + L1M4 LINE L1 1446 1563 -5292 2302 83 0 23 chr6 20668006 20668308 -161746934 + AluY SINE Alu 1 295 -16 41726 41 2 1 chr6 20668308 20674452 -161740790 + L1PA4 LINE L1 2 6152 -3 1588 250 62 50 chr6 20674486 20675014 -161740228 + L1M4 LINE L1 1642 2162 -4795 2266 116 0 0 chr6 20675014 20675325 -161739917 + AluSx SINE Alu 1 311 -1 1588 250 62 50 chr6 20675325 20676437 -161738805 + L1M4 LINE L1 2162 3383 -3574 1269 209 28 56 chr6 20676439 20676869 -161738373 - L1M4 LINE L1 -3127 3019 2602 * 1326 221 26 5 chr6 20676867 20677248 -161737994 + L1M4 LINE L1 4200 4588 -2369 831 211 67 61 chr6 20677245 20677367 -161737875 + L1MD3 LINE L1 7680 7800 -195 * 1976 117 0 38 chr6 20677367 20677708 -161737534 + AluSg SINE Alu 1 330 0 831 211 67 61 chr6 20677708 20677896 -161737346 + L1MD3 LINE L1 7800 7993 -2 251 239 0 54 chr6 20678012 20678104 -161737138 + L1ME3A LINE L1 6026 6112 -58 891 296 110 27 chr6 20678490 20679037 -161736205 - MLT1L LTR MaLR -13 602 11 266 229 90 35 chr6 20679087 20679231 -161736011 - L1M4 LINE L1 -2079 4067 3916 464 290 46 10 chr6 20680330 20680550 -161734692 - L1MC/D LINE L1 -460 5661 5468 272 333 80 26 chr6 20681900 20682365 -161732877 + HAL1 LINE L1 1171 1660 -847 231 341 111 8 chr6 20683535 20683661 -161731581 + MIR3 SINE MIR 62 200 -8 814 252 33 19 chr6 20684065 20684275 -161730967 - MIR SINE MIR -10 252 40 2256 107 0 0 chr6 20684496 20684785 -161730457 - AluSc SINE Alu -20 289 1 486 341 153 0 chr6 20686314 20686537 -161728705 - MIR SINE MIR -1 261 5 645 289 154 60 chr6 20686966 20687604 -161727638 - L2 LINE L2 -8 3305 2593 901 339 40 2 chr6 20687604 20687999 -161727243 - L2 LINE L2 -971 2343 1934 1808 76 13 0 chr6 20688414 20688639 -161726603 + AluY SINE Alu 83 310 -1 263 233 17 0 chr6 20688790 20688850 -161726392 - MLT1J LTR MaLR -313 198 138 301 310 39 31 chr6 20689111 20689240 -161726002 + L2 LINE L2 2927 3056 -216 5238 253 41 9 chr6 20689837 20691327 -161723915 + L1M2c LINE L1 68 1438 -5411 2699 196 44 2 chr6 20691352 20691970 -161723272 + L1M2c LINE L1 2192 2835 -4014 873 196 64 46 chr6 20691971 20692252 -161722990 + pTR5 LTR ERV1 743 1028 -1410 5270 80 88 36 chr6 20692331 20693116 -161722126 + LTR12 LTR ERV1 1 826 0 27561 93 7 9 chr6 20693116 20697983 -161717259 + HERV9 LTR ERV1 1 4944 -3455 2286 155 167 52 chr6 20697984 20698791 -161716451 + Harlequin LTR ERV1 840 1739 -5157 * 5392 84 16 0 chr6 20698790 20699582 -161715660 + Harlequin LTR ERV1 504 8399 0 1418 224 19 0 chr6 20699592 20699913 -161715329 + L1MB5 LINE L1 5838 6164 -10 1154 167 53 30 chr6 20699913 20700152 -161715090 - L1M4 LINE L1 -664 5510 5257 2398 59 7 13 chr6 20700152 20700457 -161714785 + AluY SINE Alu 1 303 -8 1154 167 53 30 chr6 20700457 20700658 -161714584 - L1M4 LINE L1 -917 5257 5062 488 291 73 23 chr6 20700658 20700878 -161714364 + LTR16C LTR ERVL 261 491 0 1401 232 140 7 chr6 20701103 20701539 -161713703 - LTR54B LTR ERV1 0 498 5 236 232 174 29 chr6 20703191 20703260 -161711982 + MIR SINE MIR 46 124 -84 397 176 71 88 chr6 20703908 20704090 -161711152 + MER104 DNA MER2_type 2 180 0 441 260 8 41 chr6 20704548 20704671 -161710571 + MER5B DNA MER1_type 1 119 -59 5882 229 37 25 chr6 20704703 20705887 -161709355 + L1MB3 LINE L1 3353 4568 -1578 2433 140 20 8 chr6 20705887 20706280 -161708962 + L1PA15 LINE L1 5767 6164 -1 5882 229 37 25 chr6 20706280 20706916 -161708326 + L1MB3 LINE L1 4568 5195 -951 344 198 19 3 chr6 20706916 20707133 -161708109 + AluJo SINE Alu 1 289 -13 4621 157 17 31 chr6 20707147 20708153 -161707089 + L1MB3 LINE L1 5187 6179 -4 217 167 71 0 chr6 20708173 20708215 -161707027 + MER5B DNA MER1_type 131 175 -3 411 199 333 0 chr6 20708402 20708543 -161706699 - MER5A DNA MER1_type 0 189 2 341 290 10 10 chr6 20708605 20708705 -161706537 - MIR SINE MIR -79 129 30 22 0 0 0 chr6 20708808 20708830 -161706412 + AT_rich Low_complexity Low_complexity 1 22 0 453 274 38 43 chr6 20709382 20709568 -161705674 - MIR SINE MIR -3 259 75 2190 93 49 41 chr6 20709678 20709724 -161705518 - THE1C LTR MaLR -6 369 325 2568 56 0 0 chr6 20709724 20710029 -161705213 - AluY SINE Alu -5 306 2 2190 93 49 41 chr6 20710029 20710348 -161704894 - THE1C LTR MaLR -50 325 1 959 245 37 8 chr6 20710495 20710736 -161704506 + MIR SINE MIR 15 262 0 3556 151 27 0 chr6 20712475 20713063 -161702179 - MER6A DNA MER2_type -1 604 1 434 238 119 54 chr6 20713684 20713852 -161701390 - MIR3 SINE MIR -25 183 5 224 341 8 0 chr6 20713912 20714006 -161701236 + MIR SINE MIR 53 148 -60 243 0 0 0 chr6 20715204 20715231 -161700011 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 307 224 13 0 chr6 20716234 20716310 -161698932 - MIR3 SINE MIR -7 201 125 923 284 68 65 chr6 20717023 20717610 -161697632 + MLT1L LTR MaLR 8 596 -19 2437 75 0 10 chr6 20717713 20718019 -161697223 + AluY SINE Alu 1 303 -8 1583 100 0 38 chr6 20718639 20718878 -161696364 + MER30 DNA MER1_type 1 230 0 269 286 71 0 chr6 20718947 20719017 -161696225 - L2 LINE L2 0 3272 3198 24 32 0 0 chr6 20719866 20719897 -161695345 + AT_rich Low_complexity Low_complexity 1 31 0 224 30 30 0 chr6 20720290 20720323 -161694919 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 343 292 133 10 chr6 20721278 20721473 -161693769 - LTR33A LTR ERVL -1 522 304 22 0 0 0 chr6 20722450 20722472 -161692770 + AT_rich Low_complexity Low_complexity 1 22 0 2159 110 0 0 chr6 20722555 20722869 -161692373 - AluSx SINE Alu 0 317 4 208 139 0 0 chr6 20722934 20722970 -161692272 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 422 301 83 13 chr6 20723628 20723857 -161691385 + MLT1L LTR MaLR 371 615 0 252 0 0 0 chr6 20724116 20724144 -161691098 + (TTG)n Simple_repeat Simple_repeat 2 29 0 288 0 0 0 chr6 20725452 20725484 -161689758 + (CA)n Simple_repeat Simple_repeat 2 33 0 2177 149 29 0 chr6 20727055 20727438 -161687804 + MER57A LTR ERV1 4 397 -6 219 36 0 0 chr6 20727439 20727467 -161687775 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2149 113 0 0 chr6 20728235 20728551 -161686691 + AluSx SINE Alu 1 316 0 37 32 0 16 chr6 20728608 20728626 -161686616 + AT_rich Low_complexity Low_complexity 1 18 -43 1701 167 15 18 chr6 20728626 20728956 -161686286 + L1MC1 LINE L1 6003 6331 -2 37 32 0 16 chr6 20728956 20728999 -161686243 + AT_rich Low_complexity Low_complexity 18 61 0 2347 107 3 0 chr6 20729204 20729512 -161685730 - AluSq SINE Alu -2 311 3 528 194 73 103 chr6 20730085 20730233 -161685009 + L1MC4 LINE L1 7612 7763 -279 2200 110 10 0 chr6 20730233 20730532 -161684710 - AluSq SINE Alu -11 302 1 528 194 73 103 chr6 20730532 20730712 -161684530 + L1MC4 LINE L1 7763 7930 -112 297 240 16 50 chr6 20730758 20730879 -161684363 + L1MC4 LINE L1 7926 8042 0 365 277 7 14 chr6 20730890 20731038 -161684204 + L1MC5 LINE L1 7769 7915 -46 1954 149 128 10 chr6 20731047 20731430 -161683812 + MSTA LTR MaLR 1 428 0 201 74 0 0 chr6 20731439 20731466 -161683776 + (T)n Simple_repeat Simple_repeat 1 27 0 2062 171 6 43 chr6 20731775 20732243 -161682999 + L1MB3 LINE L1 5730 6180 -3 2223 121 68 39 chr6 20732344 20732428 -161682814 + L1MA4A LINE L1 5867 5947 -356 2249 70 18 0 chr6 20732428 20732712 -161682530 + AluY SINE Alu 1 289 -22 2223 121 68 39 chr6 20732712 20733041 -161682201 + L1MA4A LINE L1 5947 6292 -11 207 0 0 0 chr6 20733571 20733594 -161681648 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 2444 89 3 0 chr6 20734278 20734582 -161680660 - AluSq SINE Alu -8 305 1 261 0 0 0 chr6 20734766 20734795 -161680447 + (TG)n Simple_repeat Simple_repeat 1 29 0 199 291 154 34 chr6 20735079 20735196 -161680046 - L2 LINE L2 -4 3268 3138 1636 184 53 26 chr6 20735398 20735778 -161679464 - MLT1B LTR MaLR 0 390 1 247 311 126 29 chr6 20735862 20736068 -161679174 - L2 LINE L2 -652 2662 2437 295 320 26 57 chr6 20736128 20736295 -161678947 + MIR SINE MIR 15 176 -71 2151 101 3 3 chr6 20736629 20736917 -161678325 + AluSq SINE Alu 1 288 -25 315 321 60 30 chr6 20736935 20737103 -161678139 + L3b LINE CR1 1216 1388 -195 2027 167 0 13 chr6 20737117 20737295 -161677947 + MLT1B LTR MaLR 1 180 -210 2354 95 3 25 chr6 20737295 20737611 -161677631 + AluSp SINE Alu 1 309 -4 2027 167 0 13 chr6 20737611 20737815 -161677427 + MLT1B LTR MaLR 180 378 -12 380 20 20 0 chr6 20738684 20738733 -161676509 + (GA)n Simple_repeat Simple_repeat 1 50 0 276 296 20 0 chr6 20738922 20739020 -161676222 + MER94 DNA DNA 1 100 -34 461 263 164 84 chr6 20739043 20739457 -161675785 - L3 LINE CR1 -342 1235 789 915 276 71 0 chr6 20739554 20739793 -161675449 - MIR SINE MIR -1 261 6 1996 128 4 0 chr6 20739826 20740107 -161675135 - AluSg SINE Alu -28 282 1 224 167 45 76 chr6 20740107 20740173 -161675069 - L3 LINE CR1 -915 662 599 186 206 0 0 chr6 20740260 20740294 -161674948 - L3 LINE CR1 -1121 456 423 819 129 25 24 chr6 20740399 20740704 -161674538 + CT-rich Low_complexity Low_complexity 1 305 0 22 0 0 0 chr6 20741408 20741430 -161673812 + AT_rich Low_complexity Low_complexity 1 22 0 183 156 0 0 chr6 20742172 20742204 -161673038 + (TG)n Simple_repeat Simple_repeat 1 32 0 197 65 32 0 chr6 20742389 20742420 -161672822 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 493 242 17 42 chr6 20742611 20742731 -161672511 - L2 LINE L2 -1 3271 3155 503 229 46 8 chr6 20743163 20743294 -161671948 + MER45A DNA AcHobo 43 178 0 563 336 22 22 chr6 20743653 20743882 -161671360 + MIR SINE MIR 21 249 -13 28 0 0 0 chr6 20744743 20744771 -161670471 + AT_rich Low_complexity Low_complexity 1 28 0 287 343 116 17 chr6 20744795 20744976 -161670266 - MIR SINE MIR -45 217 19 23 0 0 0 chr6 20746143 20746166 -161669076 + AT_rich Low_complexity Low_complexity 1 23 0 771 277 81 24 chr6 20746189 20746485 -161668757 + L2 LINE L2 3000 3312 -1 285 29 0 0 chr6 20747870 20747904 -161667338 + (CA)n Simple_repeat Simple_repeat 2 35 0 200 217 22 0 chr6 20748437 20748483 -161666759 - L2 LINE L2 -5 3308 3262 216 0 0 0 chr6 20749766 20749790 -161665452 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 477 0 0 0 chr6 20749789 20749842 -161665400 + (TG)n Simple_repeat Simple_repeat 2 54 0 278 304 38 0 chr6 20750406 20750485 -161664757 - MER5A DNA MER1_type 0 189 108 1799 112 4 0 chr6 20750831 20751099 -161664143 - L1PA14 LINE L1 -2 6159 5891 277 333 10 0 chr6 20751099 20751195 -161664047 + L2 LINE L2 2461 2557 -757 638 297 50 18 chr6 20751231 20751453 -161663789 - L2 LINE L2 -422 2892 2664 2254 123 0 3 chr6 20752024 20752334 -161662908 + AluSx SINE Alu 1 309 -3 1469 112 0 42 chr6 20753557 20753771 -161661471 - AluSx SINE Alu -13 297 93 2108 20 4 0 chr6 20753788 20754033 -161661209 - L1PA3 LINE L1 -4 6151 5906 806 97 0 0 chr6 20754033 20754136 -161661106 - AluSx SINE Alu -210 103 1 195 265 118 59 chr6 20754498 20754600 -161660642 - MIR3 SINE MIR -86 122 15 195 42 0 0 chr6 20754683 20754707 -161660535 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1283 96 36 153 chr6 20754709 20754866 -161660376 - L1PA15 LINE L1 -13 6152 6045 2576 48 3 0 chr6 20754866 20755175 -161660067 - AluY SINE Alu -1 310 1 1283 96 36 153 chr6 20755175 20755318 -161659924 - L1PA15 LINE L1 -120 6045 5887 359 316 142 9 chr6 20755901 20756113 -161659129 - MIR SINE MIR -19 243 4 2108 106 0 7 chr6 20756852 20757166 -161658076 + AluSx SINE Alu 1 312 0 197 211 18 0 chr6 20757255 20757312 -161657930 + CT-rich Low_complexity Low_complexity 2 59 0 484 150 0 0 chr6 20757558 20757638 -161657604 - MADE1 DNA Mariner 0 80 1 391 190 0 20 chr6 20758362 20758462 -161656780 + GA-rich Low_complexity Low_complexity 2 99 0 243 264 0 0 chr6 20758462 20758515 -161656727 + A-rich Low_complexity Low_complexity 1 53 0 202 302 0 0 chr6 20758755 20758818 -161656424 + G-rich Low_complexity Low_complexity 1 63 0 2025 147 0 7 chr6 20758892 20759198 -161656044 - AluSx SINE Alu 0 312 9 21 0 0 0 chr6 20759494 20759515 -161655727 + AT_rich Low_complexity Low_complexity 1 21 0 394 278 70 48 chr6 20760423 20760637 -161654605 - MIR SINE MIR -43 219 8 513 319 21 48 chr6 20761609 20762044 -161653198 - L1MEc LINE L1 -4745 1651 1229 823 214 0 18 chr6 20762404 20762572 -161652670 - FRAM SINE Alu 0 166 2 272 291 12 35 chr6 20763210 20763296 -161651946 - MIR3 SINE MIR -4 204 121 2459 90 0 0 chr6 20763491 20763803 -161651439 + AluSx SINE Alu 1 312 0 1600 234 55 39 chr6 20763949 20764645 -161650597 + L1MB8 LINE L1 875 1581 -4961 397 211 11 11 chr6 20764634 20764729 -161650513 + L1MB8 LINE L1 1987 2081 -4565 * 1732 248 45 41 chr6 20764763 20764845 -161650397 + L1MB8 LINE L1 3192 3272 -3372 2121 107 0 10 chr6 20764845 20765136 -161650106 + AluY SINE Alu 6 293 -18 1732 248 45 41 chr6 20765136 20765903 -161649339 + L1MB8 LINE L1 3272 4044 -2600 2075 118 3 0 chr6 20765922 20766389 -161648853 + AluY SINE Alu 23 490 0 879 183 0 6 chr6 20766209 20766425 -161648817 + GA-rich Low_complexity Low_complexity 1 215 0 3153 212 57 88 chr6 20766425 20766836 -161648406 + L1MB8 LINE L1 4060 4482 -2162 760 102 0 0 chr6 20766836 20766934 -161648308 + AluY SINE Alu 7 104 -207 3153 212 57 88 chr6 20766934 20767696 -161647546 + L1MB8 LINE L1 4482 5291 -1353 1328 244 13 16 chr6 20767698 20768009 -161647233 + Tigger5 DNA MER2_type 1 310 -2013 397 176 0 35 chr6 20767991 20768076 -161647166 + Tigger5 DNA MER2_type 2242 2323 0 * 1339 239 84 9 chr6 20768082 20768521 -161646721 + L1MB8 LINE L1 5298 5769 -875 511 286 0 28 chr6 20768525 20768893 -161646349 + (CATATA)n Simple_repeat Simple_repeat 1 357 0 436 268 0 91 chr6 20768849 20769047 -161646195 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 261 174 59 0 chr6 20769060 20769125 -161646117 + L1MB8 LINE L1 5754 5826 -846 2516 74 0 0 chr6 20769125 20769436 -161645806 + AluY SINE Alu 1 311 0 3220 224 43 3 chr6 20770480 20771330 -161643912 + L1MB8 LINE L1 5784 6667 -9 1590 235 24 17 chr6 20771332 20771745 -161643497 - LTR52 LTR ERVL -3 418 3 2223 135 0 0 chr6 20772030 20772341 -161642901 + AluSx SINE Alu 1 311 -1 209 276 69 0 chr6 20773092 20773150 -161642092 + MIR SINE MIR 92 153 -109 228 215 165 0 chr6 20773732 20773811 -161641431 + MLT1L LTR MaLR 507 598 -17 236 293 71 20 chr6 20774073 20774172 -161641070 + L3 LINE CR1 1300 1403 -174 2188 121 0 3 chr6 20774802 20775109 -161640133 + AluSq SINE Alu 1 306 -7 541 223 127 91 chr6 20775134 20775224 -161640018 - MIR SINE MIR -53 209 124 2170 109 0 0 chr6 20775224 20775528 -161639714 + L1PA11 LINE L1 5871 6174 0 541 223 127 91 chr6 20775528 20775634 -161639608 - MIR SINE MIR -138 124 6 257 398 6 12 chr6 20776305 20776466 -161638776 - L3b LINE CR1 -135 1448 1289 220 326 32 11 chr6 20776524 20776619 -161638623 + MIR3 SINE MIR 109 205 -3 2233 137 8 30 chr6 20777246 20777618 -161637624 - THE1B LTR MaLR 0 364 1 336 298 138 58 chr6 20779567 20779792 -161635450 - MIR SINE MIR 0 262 20 226 369 70 5 chr6 20780048 20780262 -161634980 - MLT1J1 LTR MaLR -126 320 93 379 346 14 13 chr6 20780506 20780717 -161634525 + MIR SINE MIR 9 217 -45 200 263 0 0 chr6 20781106 20781144 -161634098 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 255 241 13 13 chr6 20781477 20781556 -161633686 + L1MD2 LINE L1 6269 6347 -12 372 141 20 10 chr6 20781560 20781659 -161633583 + (TA)n Simple_repeat Simple_repeat 1 100 0 2088 117 0 20 chr6 20781662 20781960 -161633282 - AluSx SINE Alu -20 292 1 180 300 0 0 chr6 20782351 20782401 -161632841 - L2 LINE L2 -9 3263 3214 30 27 0 0 chr6 20783239 20783276 -161631966 + AT_rich Low_complexity Low_complexity 1 37 0 869 294 128 27 chr6 20783675 20784277 -161630965 + MLT2F LTR ERVL 1 663 0 246 345 150 0 chr6 20784602 20784715 -161630527 - MIR SINE MIR -61 147 18 223 250 0 0 chr6 20785197 20785249 -161629993 + A-rich Low_complexity Low_complexity 4 55 0 870 283 92 27 chr6 20785264 20785677 -161629565 - LTR16A LTR ERVL -2 455 16 1210 368 57 15 chr6 20785912 20787007 -161628235 - HERV16 LTR ERVL -480 5284 4144 1833 294 69 35 chr6 20787013 20787792 -161627450 - HERV16 LTR ERVL -2619 2377 1572 2718 316 50 8 chr6 20787991 20789159 -161626083 - HERV16 LTR ERVL -3710 1286 70 682 350 18 35 chr6 20789282 20789352 -161625890 - LTR16A LTR ERVL -6 444 374 1105 280 30 59 chr6 20789352 20789827 -161625415 + LTR16B LTR ERVL 4 464 0 682 350 18 35 chr6 20789827 20790156 -161625086 - LTR16A LTR ERVL -76 374 52 244 319 98 12 chr6 20790662 20790825 -161624417 - MIR SINE MIR -52 210 34 210 71 0 0 chr6 20792482 20792510 -161622732 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 488 298 29 35 chr6 20792980 20793151 -161622091 - MIR SINE MIR -18 244 75 254 248 67 60 chr6 20793649 20793798 -161621444 + HERV16 LTR ERVL 1585 1734 -3262 * 1401 311 32 28 chr6 20793795 20794683 -161620559 + HERV16 LTR ERVL 2524 3423 -1930 759 307 62 42 chr6 20794712 20795279 -161619963 + HERV16 LTR ERVL 3211 3788 -1208 560 319 53 43 chr6 20795401 20795851 -161619391 + HERV16 LTR ERVL 4152 4384 -612 1112 294 23 37 chr6 20796638 20797067 -161618175 + LTR16B LTR ERVL 34 456 -8 2384 86 3 0 chr6 20797710 20798014 -161617228 + AluSp SINE Alu 1 305 -8 338 236 64 29 chr6 20798382 20798522 -161616720 + MLT1H LTR MaLR 405 549 0 588 312 9 0 chr6 20798747 20798968 -161616274 - L1MC4a LINE L1 -1890 5918 5696 341 323 175 11 chr6 20800994 20801183 -161614059 - MIR SINE MIR -7 255 36 2421 72 3 13 chr6 20802029 20802335 -161612907 - AluSp SINE Alu 0 313 11 265 301 96 37 chr6 20802417 20802553 -161612689 - MIR3 SINE MIR -61 147 4 4846 154 37 19 chr6 20804828 20805797 -161609445 + L1PB3 LINE L1 4522 5529 -625 2086 147 0 0 chr6 20805797 20806096 -161609146 + AluSq SINE Alu 1 299 -14 4846 154 37 19 chr6 20806096 20806727 -161608515 + L1PB3 LINE L1 5529 6147 -7 370 147 67 0 chr6 20807527 20807602 -161607640 + MADE1 DNA Mariner 1 80 0 200 323 37 49 chr6 20808904 20809068 -161606174 + MIR SINE MIR 99 260 -2 316 308 0 0 chr6 20809727 20809831 -161605411 + (TA)n Simple_repeat Simple_repeat 2 105 0 3012 238 68 6 chr6 20809897 20810920 -161604322 - L1ME2 LINE L1 -39 6125 5035 1368 242 31 31 chr6 20810930 20811409 -161603833 - L1ME2 LINE L1 -1286 4860 4382 1768 172 9 46 chr6 20812872 20813221 -161602021 - MLT1A1 LTR MaLR 0 365 30 5178 105 3 16 chr6 20813223 20813901 -161601341 - L1PA11 LINE L1 -14 6160 5492 2470 81 0 0 chr6 20813901 20814209 -161601033 - AluY SINE Alu -3 308 1 5178 105 3 16 chr6 20814209 20814291 -161600951 - L1PA11 LINE L1 -682 5492 5410 247 163 0 20 chr6 20814291 20814340 -161600902 - MLT1A1 LTR MaLR -319 55 8 188 146 0 21 chr6 20815180 20815228 -161600014 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 710 180 8 0 chr6 20815580 20815702 -161599540 - Tigger1 DNA MER2_type 0 2418 2296 4334 138 26 0 chr6 20815702 20816400 -161598842 + L1PA16 LINE L1 5442 6157 -9 9008 128 28 10 chr6 20816434 20817135 -161598107 - Tigger1 DNA MER2_type -980 1438 751 2014 129 0 7 chr6 20817135 20817430 -161597812 + AluSg SINE Alu 3 295 -15 9008 128 28 10 chr6 20817430 20818139 -161597103 - Tigger1 DNA MER2_type -1667 751 2 413 333 22 7 chr6 20818266 20818401 -161596841 + MIR3 SINE MIR 6 142 -66 587 205 0 0 chr6 20818870 20818982 -161596260 + MER45B DNA AcHobo 61 172 -868 1036 226 82 38 chr6 20818982 20819323 -161595919 - MLT1A1 LTR MaLR 0 365 10 2174 210 48 42 chr6 20819336 20819879 -161595363 + MER45B DNA AcHobo 173 718 -322 283 250 230 0 chr6 20819887 20819987 -161595255 + MER5A DNA MER1_type 64 186 -3 231 170 0 0 chr6 20820025 20820072 -161595170 + GA-rich Low_complexity Low_complexity 1 47 0 2633 45 0 3 chr6 20820767 20821079 -161594163 - AluY SINE Alu 0 311 1 233 97 81 0 chr6 20822152 20822214 -161593028 + (TA)n Simple_repeat Simple_repeat 2 68 0 38896 73 8 1 chr6 20822264 20827204 -161588038 - HERVL-A1 LTR ERVL -682 4972 1 308 48 0 24 chr6 20827204 20827246 -161587996 - MLT2A1 LTR ERVL 0 453 413 404 24 72 12 chr6 20827248 20827331 -161587911 + (TA)n Simple_repeat Simple_repeat 1 88 0 1614 80 46 8 chr6 20827356 20827593 -161587649 - MLT2A1 LTR ERVL -198 246 1 210 388 140 9 chr6 20828453 20828889 -161586353 + L2 LINE L2 1972 2464 -850 * 399 341 30 0 chr6 20828886 20829018 -161586224 + L2 LINE L2 3137 3272 0 224 308 113 15 chr6 20829553 20829686 -161585556 + L2 LINE L2 3153 3298 -15 7028 111 13 25 chr6 20829833 20831135 -161584107 + L1MA1 LINE L1 5016 6301 -1 440 309 73 30 chr6 20832569 20832802 -161582440 - MIR SINE MIR 0 262 20 2211 105 7 0 chr6 20832852 20833146 -161582096 - AluSg SINE Alu -14 296 1 282 362 9 0 chr6 20833626 20833731 -161581511 - L2 LINE L2 -16 3297 3192 497 235 279 7 chr6 20835051 20835331 -161579911 - MLT1F LTR MaLR -7 535 142 1467 194 19 9 chr6 20835331 20835626 -161579616 - MLT1E1 LTR MaLR 0 654 324 2197 102 0 0 chr6 20835673 20835956 -161579286 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr6 20835960 20835983 -161579259 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3471 182 50 47 chr6 20835986 20836127 -161579115 - L1MB7 LINE L1 -11 6173 6034 1983 147 0 13 chr6 20836127 20836427 -161578815 - AluSx SINE Alu -16 296 1 3471 182 50 47 chr6 20836427 20837544 -161577698 - L1MB7 LINE L1 -150 6034 4905 887 226 53 23 chr6 20837545 20837810 -161577432 - MLT1E1 LTR MaLR -379 275 3 328 356 19 6 chr6 20837826 20837986 -161577256 - MLT1F LTR MaLR -393 162 1 1984 157 0 3 chr6 20838026 20838332 -161576910 - AluSx SINE Alu -3 309 5 26 0 0 0 chr6 20838957 20838983 -161576259 + AT_rich Low_complexity Low_complexity 1 26 0 290 165 0 35 chr6 20839063 20839148 -161576094 + CT-rich Low_complexity Low_complexity 1 82 0 221 241 0 0 chr6 20839306 20839364 -161575878 + A-rich Low_complexity Low_complexity 5 62 0 11639 164 20 27 chr6 20839658 20842369 -161572873 - L1P4 LINE L1 -359 5809 3126 2017 127 0 0 chr6 20842369 20842644 -161572598 - AluSq SINE Alu -38 275 1 11639 164 20 27 chr6 20842644 20842850 -161572392 - L1P4 LINE L1 -3042 3126 2920 2068 39 47 4 chr6 20842850 20843104 -161572138 + AluY SINE Alu 34 298 -13 1677 207 10 0 chr6 20843535 20843839 -161571403 - AluJb SINE Alu -5 307 1 2120 4 0 0 chr6 20843849 20844075 -161571167 - AluYa5 SINE Alu -10 301 76 367 312 7 36 chr6 20844075 20844213 -161571029 - MIR SINE MIR -63 199 66 1308 266 32 40 chr6 20844234 20844832 -161570410 - Charlie7 DNA MER1_type -33 2579 1987 2215 233 106 106 chr6 20844832 20845621 -161569621 + L1MCa LINE L1 1 788 -5257 2090 160 14 8 chr6 20845621 20845984 -161569258 - MLT1A1 LTR MaLR 0 365 1 2215 233 106 106 chr6 20845984 20846115 -161569127 + L1MCa LINE L1 788 917 -5128 4279 118 5 2 chr6 20846115 20846725 -161568517 - LTR9 LTR ERV1 0 612 1 2215 233 106 106 chr6 20846725 20847002 -161568240 + L1MCa LINE L1 917 1173 -4872 2113 130 0 25 chr6 20847493 20847809 -161567433 + AluSx SINE Alu 1 308 -4 418 264 187 53 chr6 20847972 20848271 -161566971 + MLT1I LTR MaLR 71 409 0 343 48 0 0 chr6 20849369 20849411 -161565831 - L1PA7 LINE L1 -11 6143 6102 5024 63 2 3 chr6 20849435 20850073 -161565169 - L1PA7 LINE L1 -11 6143 5507 280 295 158 86 chr6 20850376 20850610 -161564632 - L2 LINE L2 -27 3245 2995 23 0 0 0 chr6 20850668 20850691 -161564551 + AT_rich Low_complexity Low_complexity 1 23 0 875 54 9 0 chr6 20850692 20850804 -161564438 - L1PA5 LINE L1 -9 6145 6033 2587 52 0 0 chr6 20850804 20851128 -161564114 + L1PA4 LINE L1 5646 5969 -186 559 201 13 91 chr6 20851189 20851343 -161563899 + MER3 DNA MER1_type 1 142 -67 185 62 0 31 chr6 20851330 20851362 -161563880 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 317 319 66 30 chr6 20851469 20851635 -161563607 - L2 LINE L2 -508 2806 2635 2250 105 0 0 chr6 20854597 20854882 -161560360 + AluSg SINE Alu 1 285 -25 1512 49 25 0 chr6 20854906 20855109 -161560133 - L1PA10 LINE L1 -187 5981 5774 198 0 0 0 chr6 20855120 20855142 -161560100 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 27 0 0 0 chr6 20855282 20855309 -161559933 + AT_rich Low_complexity Low_complexity 1 27 0 1734 168 4 4 chr6 20855313 20855593 -161559649 + AluJb SINE Alu 6 285 -27 279 300 73 0 chr6 20855802 20855952 -161559290 - L1ME4a LINE L1 -81 6040 5880 1404 289 162 11 chr6 20856140 20856799 -161558443 - L2 LINE L2 0 3313 2755 2390 70 0 13 chr6 20856799 20857101 -161558141 + AluY SINE Alu 1 298 -13 1404 289 162 11 chr6 20857101 20857240 -161558002 - L2 LINE L2 -558 2755 2638 1974 164 65 25 chr6 20857240 20857642 -161557600 - MER47B DNA MER2_type 0 418 1 1404 289 162 11 chr6 20857642 20857828 -161557414 - L2 LINE L2 -675 2638 2172 659 66 0 11 chr6 20858105 20858196 -161557046 + 5S rRNA rRNA 1 90 -31 23 86 0 0 chr6 20859507 20859565 -161555677 + AT_rich Low_complexity Low_complexity 1 58 0 293 322 34 7 chr6 20859686 20859832 -161555410 - MIR SINE MIR -46 216 67 1551 207 21 3 chr6 20859836 20860165 -161555077 - MER58B DNA MER1_type -6 335 1 1912 136 7 14 chr6 20961090 20961385 -161453857 - AluSx SINE Alu -16 296 4 2022 156 12 6 chr6 20961439 20961785 -161453457 + MER7A DNA MER2_type 1 346 0 1506 191 35 85 chr6 20961794 20962418 -161452824 - L1MC5 LINE L1 -101 7860 7268 809 205 73 19 chr6 20962550 20962826 -161452416 - L1MC4 LINE L1 -728 7233 6959 473 265 66 7 chr6 20963135 20963286 -161451956 + MIR SINE MIR 103 262 0 1529 180 49 35 chr6 20964061 20964324 -161450918 - L1MB8 LINE L1 -13 6165 5892 402 69 0 0 chr6 20964324 20964382 -161450860 + (TG)n Simple_repeat Simple_repeat 1 58 0 1529 180 49 35 chr6 20964382 20964545 -161450697 - L1MB8 LINE L1 -286 5892 5733 21 36 0 0 chr6 20964926 20964954 -161450288 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr6 20965979 20966000 -161449242 + (TTA)n Simple_repeat Simple_repeat 2 22 0 583 211 18 0 chr6 20966003 20966117 -161449125 - AluJb SINE Alu -196 116 1 445 223 170 0 chr6 20966185 20966297 -161448945 - FLAM_A SINE Alu -2 131 1 207 191 24 0 chr6 20966559 20966601 -161448641 + CT-rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr6 20966604 20966639 -161448603 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 231 128 17 chr6 20966819 20966936 -161448306 - L1ME3A LINE L1 -272 5898 5769 324 279 33 94 chr6 20967165 20967318 -161447924 - L1ME3A LINE L1 -925 5221 5087 1690 141 78 14 chr6 20967318 20967602 -161447640 + AluJb SINE Alu 6 307 -5 324 279 33 94 chr6 20967602 20967692 -161447550 - L1ME3A LINE L1 -1059 5087 4993 186 43 0 0 chr6 20967693 20967716 -161447526 + (TG)n Simple_repeat Simple_repeat 2 24 0 999 156 12 12 chr6 20967816 20967976 -161447266 + FRAM SINE Alu 2 161 -15 634 323 92 10 chr6 20968452 20968941 -161446301 - L1ME3A LINE L1 -341 5829 5301 1497 148 7 21 chr6 20968978 20969262 -161445980 - L1MB7 LINE L1 0 6184 5905 6527 135 119 47 chr6 20970954 20972407 -161442835 - pTR5 LTR ERV1 -143 2295 738 348 271 15 68 chr6 20972585 20972718 -161442524 - MER5A DNA MER1_type -57 132 7 2026 106 7 46 chr6 20972869 20973172 -161442070 - AluSx SINE Alu -20 292 2 1938 86 0 32 chr6 20973183 20973462 -161441780 - AluY SINE Alu -5 306 37 37 0 0 21 chr6 20973775 20973805 -161441437 + AT_rich Low_complexity Low_complexity 1 31 -16 2441 49 0 0 chr6 20973805 20974093 -161441149 - AluY SINE Alu -23 288 1 37 0 0 21 chr6 20974093 20974110 -161441132 + AT_rich Low_complexity Low_complexity 31 47 0 981 213 229 17 chr6 20974432 20974785 -161440457 + L1ME1 LINE L1 5720 6147 -19 795 167 48 0 chr6 20974781 20975018 -161440224 + L1ME1 LINE L1 5192 5440 -745 * 6810 145 19 35 chr6 20975017 20975907 -161439335 + L1MA4 LINE L1 3921 4824 -1476 2168 122 0 10 chr6 20975907 20976210 -161439032 + AluSq SINE Alu 11 310 -3 6810 145 19 35 chr6 20976210 20977727 -161437515 + L1MA4 LINE L1 4824 6290 -10 234 209 22 11 chr6 20977727 20977818 -161437424 + Charlie5 DNA MER1_type 2437 2528 -84 26 64 0 0 chr6 20977829 20977876 -161437366 + AT_rich Low_complexity Low_complexity 1 47 0 2516 209 36 52 chr6 20977918 20978604 -161436638 + L1ME1 LINE L1 5474 6148 -18 938 281 36 69 chr6 20979434 20979549 -161435693 + L2 LINE L2 2862 2979 -334 2332 88 7 0 chr6 20979549 20979846 -161435396 + AluSp SINE Alu 1 299 -14 938 281 36 69 chr6 20979846 20980196 -161435046 + L2 LINE L2 2979 3312 -1 775 216 50 66 chr6 20980202 20980259 -161434983 - MIR SINE MIR -5 257 201 3276 146 9 13 chr6 20980259 20980788 -161434454 + MER1A DNA MER1_type 1 527 0 775 216 50 66 chr6 20980788 20980971 -161434271 - MIR SINE MIR -61 201 21 324 253 72 24 chr6 20982313 20982396 -161432846 + MIR SINE MIR 28 114 -148 327 311 71 36 chr6 20982650 20982846 -161432396 - L1MEc LINE L1 -3647 2568 2366 1032 188 134 3 chr6 20982847 20983139 -161432103 + MER46C DNA MER2_type 1 330 -8 393 237 86 137 chr6 20983161 20983281 -161431961 - L1MEc LINE L1 -4023 2373 2248 1658 140 41 51 chr6 20983281 20983573 -161431669 + AluJb SINE Alu 1 289 -23 393 237 86 137 chr6 20983573 20983976 -161431266 - L1MEc LINE L1 -4148 2248 1877 905 141 12 12 chr6 20984248 20984418 -161430824 - L1MB8 LINE L1 -2 6176 6007 1629 195 84 7 chr6 20984423 20984621 -161430621 + MLT1C LTR MaLR 6 187 -280 2341 122 0 0 chr6 20984621 20984932 -161430310 + AluSp SINE Alu 1 311 -2 1629 195 84 7 chr6 20984932 20985159 -161430083 + MLT1C LTR MaLR 187 464 -3 6759 197 37 24 chr6 20985161 20985367 -161429875 - L1MB8 LINE L1 -174 6010 5808 1875 160 0 39 chr6 20985367 20985551 -161429691 - AluJo SINE Alu -12 300 131 2477 62 0 10 chr6 20985551 20985855 -161429387 + AluSp SINE Alu 1 301 -12 1875 160 0 39 chr6 20985855 20985982 -161429260 - AluJo SINE Alu -181 131 1 6759 197 37 24 chr6 20985982 20988261 -161426981 - L1MB8 LINE L1 -376 5808 3494 10161 180 17 14 chr6 20988272 20991381 -161423861 - L1PA16 LINE L1 -11 6155 3041 481 111 0 0 chr6 20991382 20991454 -161423788 - U3 snRNA snRNA -145 72 1 1251 253 15 15 chr6 20991472 20991927 -161423315 - L1MB8 LINE L1 -2657 3489 3035 * 1417 261 38 66 chr6 20991916 20992724 -161422518 - L1MEc LINE L1 -5006 1199 414 1208 260 63 35 chr6 20992735 20993196 -161422046 + L2 LINE L2 2840 3313 0 230 270 27 0 chr6 20993286 20993318 -161421924 + GA-rich Low_complexity Low_complexity 2 32 -45 781 204 0 0 chr6 20993318 20993450 -161421792 + FLAM_A SINE Alu 1 132 -1 230 270 27 0 chr6 20993450 20993491 -161421751 + GA-rich Low_complexity Low_complexity 32 77 0 1768 128 9 25 chr6 20994441 20994792 -161420450 - MER4A LTR ERV1 0 664 261 585 121 0 10 chr6 20994792 20994891 -161420351 - MER4A LTR ERV1 -566 98 1 2167 84 28 3 chr6 20995224 20995511 -161419731 + AluSg1 SINE Alu 1 294 -15 2109 123 3 0 chr6 20996081 20996374 -161418868 + AluSx SINE Alu 1 294 -18 456 313 114 11 chr6 20996404 20996580 -161418662 + MIR SINE MIR 37 230 -32 4553 106 0 2 chr6 20997129 20997773 -161417469 + L1PA13 LINE L1 5517 6159 -4 209 239 22 0 chr6 20997828 20997874 -161417368 - L2 LINE L2 -8 3264 3218 2474 66 0 10 chr6 20998530 20998832 -161416410 - AluY SINE Alu -12 299 1 507 304 90 83 chr6 20998884 20999341 -161415901 - L2 LINE L2 -2 3270 2811 2172 125 3 3 chr6 20999583 20999895 -161415347 - AluSx SINE Alu 0 312 1 2424 94 0 0 chr6 21000148 21000457 -161414785 + AluSc SINE Alu 1 309 0 3930 134 13 2 chr6 21000464 21001090 -161414152 + MER41B LTR ERV1 3 635 0 320 336 109 8 chr6 21001280 21001399 -161413843 - L2 LINE L2 0 3272 3142 227 285 88 151 chr6 21001449 21001859 -161413383 + L2 LINE L2 2807 3190 -82 1338 46 0 0 chr6 21002167 21002320 -161412922 + AluY SINE Alu 151 303 -8 2367 89 0 0 chr6 21003180 21003472 -161411770 - AluSg SINE Alu -18 292 1 1535 265 78 75 chr6 21004651 21004793 -161410449 - MER115 DNA AcHobo -4 689 549 2360 106 0 3 chr6 21004793 21005104 -161410138 - AluSq SINE Alu -3 310 1 1535 265 78 75 chr6 21005104 21005630 -161409612 - MER115 DNA AcHobo -144 549 19 2340 116 7 0 chr6 21006884 21007194 -161408048 + AluSx SINE Alu 1 312 0 351 298 5 105 chr6 21007283 21007474 -161407768 - MIR3 SINE MIR -17 191 20 1546 149 22 99 chr6 21007869 21008191 -161407051 + AluJo SINE Alu 1 297 -15 24 0 0 0 chr6 21008225 21008249 -161406993 + AT_rich Low_complexity Low_complexity 1 24 0 735 218 0 0 chr6 21008308 21008441 -161406801 + FLAM_A SINE Alu 1 133 0 6097 154 34 19 chr6 21008582 21009869 -161405373 - L1MA7 LINE L1 0 6291 5025 712 169 39 15 chr6 21009869 21009999 -161405243 - FLAM_C SINE Alu 0 133 1 6097 154 34 19 chr6 21009999 21010294 -161404948 - L1MA7 LINE L1 -1266 5025 4736 1734 194 3 32 chr6 21010294 21010609 -161404633 - AluJo SINE Alu -6 306 1 6097 154 34 19 chr6 21010609 21010648 -161404594 - L1MA7 LINE L1 -1555 4736 4699 351 0 0 0 chr6 21010648 21010687 -161404555 + (TG)n Simple_repeat Simple_repeat 1 39 0 6097 154 34 19 chr6 21010687 21011172 -161404070 - L1MA7 LINE L1 -1592 4699 4157 3792 124 208 82 chr6 21012723 21014094 -161401148 - pTR5 LTR ERV1 0 2438 742 2031 119 34 3 chr6 21014254 21014549 -161400693 - AluSx SINE Alu -5 307 4 332 288 122 18 chr6 21014585 21014807 -161400435 - MIR SINE MIR -17 245 1 380 259 0 0 chr6 21015117 21015202 -161400040 + Charlie5 DNA MER1_type 10 94 -2518 800 169 8 0 chr6 21015241 21015371 -161399871 - AluSq/x SINE Alu -182 131 1 1137 187 83 56 chr6 21015372 21015538 -161399704 + Charlie5 DNA MER1_type 136 296 -2328 2272 112 10 0 chr6 21015538 21015841 -161399401 - AluSx SINE Alu -6 306 1 1137 187 83 56 chr6 21015841 21016011 -161399231 + Charlie5 DNA MER1_type 296 481 -2143 1001 197 89 15 chr6 21016021 21016255 -161398987 - MLT2B1 LTR ERVL 0 520 222 2251 99 7 0 chr6 21016845 21017139 -161398103 - AluSx SINE Alu -16 296 1 2257 111 3 10 chr6 21017399 21017706 -161397536 + AluSx SINE Alu 3 307 -5 22 56 0 0 chr6 21017899 21017935 -161397307 + AT_rich Low_complexity Low_complexity 1 36 0 1250 311 9 12 chr6 21017950 21018284 -161396958 + HERV16 LTR ERVL 2701 3033 -1963 749 310 38 34 chr6 21018964 21019467 -161395775 + HAL1b LINE L1 89 593 -755 431 218 11 0 chr6 21019465 21019552 -161395690 + L1MC5 LINE L1 6653 6740 -1221 * 1825 169 0 3 chr6 21020442 21020738 -161394504 - AluJo SINE Alu -17 295 1 2266 104 10 7 chr6 21020976 21021284 -161393958 + AluSx SINE Alu 1 309 -3 363 313 60 30 chr6 21021461 21021694 -161393548 - MARNA DNA Mariner -75 511 272 1602 257 120 46 chr6 21021765 21022320 -161392922 + Zaphod DNA AcHobo 17 622 -3409 244 48 48 0 chr6 21022320 21022362 -161392880 + (TA)n Simple_repeat Simple_repeat 1 44 0 1602 257 120 46 chr6 21022362 21022416 -161392826 + Zaphod DNA AcHobo 622 671 -3360 509 163 12 0 chr6 21022416 21022496 -161392746 - Tigger7 DNA MER2_type 0 2491 2411 1810 199 129 58 chr6 21022522 21023096 -161392146 + LTR1B LTR ERV1 1 615 -211 231 216 0 20 chr6 21023105 21023156 -161392086 + LTR28 LTR ERV1 915 964 -56 2014 192 44 3 chr6 21023257 21023643 -161391599 - Tigger7 DNA MER2_type -2085 402 1 686 184 52 55 chr6 21023643 21023986 -161391256 + Zaphod DNA AcHobo 670 1011 -3020 * 1400 206 110 39 chr6 21023958 21024195 -161391047 + Zaphod DNA AcHobo 3595 3875 -156 2100 136 0 3 chr6 21024195 21024497 -161390745 + AluSx SINE Alu 1 301 -11 1400 206 110 39 chr6 21024497 21024667 -161390575 + Zaphod DNA AcHobo 3875 4031 0 2148 105 7 3 chr6 21024886 21025180 -161390062 - AluSq SINE Alu -18 295 1 2281 117 0 0 chr6 21025251 21025559 -161389683 - AluSx SINE Alu -4 308 1 427 298 8 8 chr6 21025655 21025776 -161389466 - MER5B DNA MER1_type -8 170 50 957 163 0 7 chr6 21025814 21025961 -161389281 - AluSg/x SINE Alu -33 279 134 2310 47 29 4 chr6 21025962 21026236 -161389006 - AluY SINE Alu -16 295 15 2562 191 17 101 chr6 21026236 21026374 -161388868 - L1MD2 LINE L1 -65 6177 6029 255 61 0 0 chr6 21026374 21026407 -161388835 + (TG)n Simple_repeat Simple_repeat 1 33 0 2562 191 17 101 chr6 21026407 21026980 -161388262 - L1MD2 LINE L1 -213 6029 5526 659 233 98 123 chr6 21026987 21027557 -161387685 + MER34B LTR ERV1 6 561 -4 793 254 66 31 chr6 21027584 21027840 -161387402 + LTR8 LTR ERV1 2 266 -425 454 223 121 40 chr6 21027908 21028140 -161387102 + LTR8A LTR ERV1 84 461 -266 2779 169 17 27 chr6 21028148 21028741 -161386501 + pTR5 LTR ERV1 742 1328 -1110 775 179 85 113 chr6 21028741 21028773 -161386469 + LTR8A LTR ERV1 408 439 -288 3511 156 34 128 chr6 21028773 21029680 -161385562 + LTR12 LTR ERV1 5 826 0 775 179 85 113 chr6 21029680 21029976 -161385266 + LTR8A LTR ERV1 439 727 0 1239 203 12 30 chr6 21029976 21030260 -161384982 - L1MD2 LINE L1 -734 5508 5238 1624 168 0 38 chr6 21030260 21030551 -161384691 - AluJb SINE Alu -13 299 20 1239 203 12 30 chr6 21030551 21030714 -161384528 - L1MD2 LINE L1 -1004 5238 5074 375 211 11 63 chr6 21030716 21030811 -161384431 + MER21B LTR ERV1 1 90 -773 2805 233 45 33 chr6 21030940 21031465 -161383777 + MER21B LTR ERV1 98 636 -227 1520 197 139 47 chr6 21031465 21031932 -161383310 + LTR54 LTR ERV1 1 510 0 2805 233 45 33 chr6 21031932 21032111 -161383131 + MER21B LTR ERV1 636 811 -52 563 108 0 65 chr6 21032144 21032279 -161382963 - AluSp/q SINE Alu 0 313 215 2256 109 3 10 chr6 21032353 21032657 -161382585 - AluSp SINE Alu -11 302 1 595 215 49 85 chr6 21032684 21032854 -161382388 - L1MD2 LINE L1 -1118 5028 4868 1227 96 21 11 chr6 21032854 21033041 -161382201 + L1MA5 LINE L1 6108 6296 -4 595 215 49 85 chr6 21033041 21033116 -161382126 - L1MD2 LINE L1 -1278 4868 4792 692 246 89 0 chr6 21033126 21033329 -161381913 + LTR1B LTR ERV1 1 221 -605 4045 134 67 62 chr6 21033390 21034595 -161380647 - pTR5 LTR ERV1 -143 2295 749 1267 200 82 65 chr6 21034598 21035163 -161380079 + LTR1B LTR ERV1 308 1020 0 3167 158 115 13 chr6 21035178 21035787 -161379455 - LTR51 LTR ERV1 0 671 1 448 278 35 0 chr6 21035787 21035956 -161379286 - L1MD2 LINE L1 -1349 4797 4623 430 261 0 9 chr6 21035958 21036069 -161379173 - MER5B DNA MER1_type -63 115 6 289 215 0 131 chr6 21037132 21037262 -161377980 - MER5A DNA MER1_type -44 145 33 2326 100 0 28 chr6 21037414 21037735 -161377507 - AluSx SINE Alu 0 312 1 1316 241 65 34 chr6 21038504 21038919 -161376323 + MLT1D LTR MaLR 2 429 -76 7881 133 69 43 chr6 21038931 21040447 -161374795 - pTR5 LTR ERV1 -143 2295 741 183 42 0 0 chr6 21040459 21040483 -161374759 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2134 108 0 0 chr6 21040486 21040763 -161374479 - AluSx SINE Alu -32 280 4 405 123 0 15 chr6 21040767 21040832 -161374410 + MLT1D LTR MaLR 440 503 -2 242 286 137 30 chr6 21040850 21041018 -161374224 + MIR SINE MIR 67 252 -10 337 333 101 6 chr6 21041032 21041191 -161374051 - L3 LINE CR1 -36 1541 1368 24 0 0 0 chr6 21041193 21041217 -161374025 + AT_rich Low_complexity Low_complexity 1 24 0 1466 159 29 108 chr6 21041221 21041363 -161373879 - AluJo SINE Alu -22 290 185 658 29 48 0 chr6 21041363 21041468 -161373774 + (TA)n Simple_repeat Simple_repeat 2 111 0 1466 159 29 108 chr6 21041468 21041640 -161373602 - AluJo SINE Alu -127 185 1 299 226 65 54 chr6 21041708 21041801 -161373441 - MER91B DNA MER1_type -2 188 95 371 256 64 40 chr6 21041821 21041946 -161373296 - MER91B DNA MER1_type -62 128 1 232 351 37 0 chr6 21042208 21042342 -161372900 - L3 LINE CR1 -813 764 626 218 294 56 67 chr6 21042413 21042563 -161372679 - MIR SINE MIR -65 143 3 263 289 74 47 chr6 21043002 21043151 -161372091 - MIR3 SINE MIR -2 206 54 1021 269 69 94 chr6 21043273 21043793 -161371449 + MLT1K LTR MaLR 67 573 -15 183 354 0 0 chr6 21043893 21043972 -161371270 - L3 LINE CR1 -196 1381 1303 413 353 66 25 chr6 21044033 21044350 -161370892 + L3 LINE CR1 1025 1354 -223 512 122 0 14 chr6 21044350 21044455 -161370787 - AluSg/x SINE Alu 0 315 212 197 330 139 0 chr6 21044614 21044729 -161370513 + L2 LINE L2 3141 3271 -1 2378 87 3 0 chr6 21044804 21045102 -161370140 + AluSp SINE Alu 1 299 -14 2328 69 10 16 chr6 21045157 21045462 -161369780 - AluY SINE Alu -7 304 2 1836 166 3 16 chr6 21045724 21046037 -161369205 + AluJo SINE Alu 1 309 -3 951 297 58 27 chr6 21046044 21046715 -161368527 + L1ME3A LINE L1 4343 5034 -1112 1742 183 0 26 chr6 21046723 21047034 -161368208 + AluJo SINE Alu 1 303 -9 2606 176 13 74 chr6 21047047 21047599 -161367643 - MLT2B1 LTR ERVL 0 520 3 365 206 0 0 chr6 21047619 21047692 -161367550 + L1MA9 LINE L1 6240 6312 0 999 275 76 18 chr6 21047697 21048090 -161367152 + L1ME3A LINE L1 5296 5711 -451 1001 163 73 0 chr6 21048090 21048268 -161366974 + AluJo SINE Alu 121 311 -1 480 264 13 13 chr6 21048278 21048433 -161366809 + L1ME3A LINE L1 5727 5881 -289 1919 196 51 52 chr6 21048629 21048799 -161366443 - Charlie2 DNA MER1_type 0 2862 2693 1627 157 39 18 chr6 21048799 21049085 -161366157 + AluJo SINE Alu 1 292 -20 1919 196 51 52 chr6 21049085 21049563 -161365679 - Charlie2 DNA MER1_type -169 2693 2215 229 198 91 83 chr6 21049541 21049662 -161365580 - Charlie2a DNA MER1_type -1763 1099 978 * 2122 238 104 33 chr6 21049671 21050621 -161364621 - Charlie2a DNA MER1_type -1788 1074 38 1102 135 0 45 chr6 21050729 21050907 -161364335 - FRAM SINE Alu -10 166 1 302 134 15 0 chr6 21050934 21051001 -161364241 + (TA)n Simple_repeat Simple_repeat 1 68 0 2127 120 7 3 chr6 21051006 21051307 -161363935 + AluSx SINE Alu 1 302 -10 26 74 0 0 chr6 21051307 21051361 -161363881 + AT_rich Low_complexity Low_complexity 1 54 0 1531 206 59 78 chr6 21051561 21051965 -161363277 - MER39 LTR ERV1 0 707 167 864 168 27 0 chr6 21053008 21053157 -161362085 + MLT1A1 LTR MaLR 1 153 -212 2467 91 3 0 chr6 21053160 21053469 -161361773 + AluSp SINE Alu 1 310 -3 1102 114 0 72 chr6 21053469 21053662 -161361580 + AluSg/x SINE Alu 132 310 0 912 169 28 89 chr6 21053675 21053843 -161361399 + MLT1A1 LTR MaLR 166 320 -45 2240 105 7 0 chr6 21053843 21054138 -161361104 - AluSx SINE Alu -15 297 1 912 169 28 89 chr6 21054138 21054182 -161361060 + MLT1A1 LTR MaLR 320 365 0 1195 289 42 27 chr6 21054199 21054965 -161360277 + L2 LINE L2 2534 3306 -7 2363 86 17 0 chr6 21056192 21056493 -161358749 - AluSp SINE Alu -7 306 1 348 309 8 8 chr6 21056773 21056896 -161358346 - MIR SINE MIR -106 156 34 405 244 0 22 chr6 21056897 21056987 -161358255 - AluS SINE Alu -222 91 4 191 336 64 0 chr6 21058468 21058578 -161356664 + MIR SINE MIR 96 212 -50 2279 99 10 0 chr6 21058874 21059176 -161356066 - AluSx SINE Alu -7 305 1 257 200 22 33 chr6 21059265 21059445 -161355797 + (TA)n Simple_repeat Simple_repeat 1 178 0 226 234 0 16 chr6 21059767 21059831 -161355411 + (TG)n Simple_repeat Simple_repeat 1 63 0 315 0 0 0 chr6 21061478 21061513 -161353729 + (TG)n Simple_repeat Simple_repeat 2 36 0 267 31 0 0 chr6 21062875 21062907 -161352335 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 357 210 51 58 chr6 21063188 21063326 -161351916 + MIR SINE MIR 38 174 -88 365 289 56 0 chr6 21063374 21063516 -161351726 - LTR33 LTR ERVL -8 513 364 2398 78 0 0 chr6 21065022 21065317 -161349925 - AluSg SINE Alu -15 295 1 280 283 58 17 chr6 21065462 21065582 -161349660 - L2 LINE L2 -10 3303 3179 795 190 37 0 chr6 21065819 21065982 -161349260 - MER58 DNA MER1_type -2224 196 28 209 274 232 0 chr6 21066046 21066141 -161349101 + MER5A DNA MER1_type 72 188 -1 2353 106 0 0 chr6 21067009 21067311 -161347931 + AluSx SINE Alu 1 302 -10 225 192 19 19 chr6 21068213 21068265 -161346977 + CT-rich Low_complexity Low_complexity 1 52 0 1788 191 0 7 chr6 21068265 21068568 -161346674 - AluJo SINE Alu -11 301 1 249 266 124 0 chr6 21068571 21068684 -161346558 - MIR SINE MIR -116 146 20 1551 188 181 2 chr6 21069397 21069818 -161345424 - LTR54B LTR ERV1 -2 496 1 949 111 0 15 chr6 21070326 21070461 -161344781 - FLAM_C SINE Alu 0 133 1 22 80 0 0 chr6 21071232 21071282 -161343960 + AT_rich Low_complexity Low_complexity 1 50 0 35 78 0 0 chr6 21071497 21071574 -161343668 + AT_rich Low_complexity Low_complexity 1 77 0 2264 107 0 3 chr6 21071601 21071899 -161343343 + AluSx SINE Alu 1 297 -15 198 167 0 0 chr6 21072115 21072151 -161343091 + CT-rich Low_complexity Low_complexity 3 38 0 2421 148 32 17 chr6 21072273 21072678 -161342564 - LTR57 LTR ERVL 0 411 1 2324 105 0 0 chr6 21073501 21073795 -161341447 - AluSg SINE Alu -16 294 1 2209 166 20 5 chr6 21074220 21074617 -161340625 - MER57A LTR ERV1 0 403 1 2284 115 3 6 chr6 21075225 21075538 -161339704 - AluSx SINE Alu 0 312 1 271 95 0 32 chr6 21075545 21075608 -161339634 - L1MD3 LINE L1 0 7995 7935 4031 90 11 45 chr6 21075620 21076240 -161339002 - MER4A LTR ERV1 0 600 2 701 157 0 25 chr6 21076241 21076362 -161338880 + FLAM_A SINE Alu 10 127 -15 886 209 44 0 chr6 21076363 21076545 -161338697 - L1MD3 LINE L1 -49 7946 7757 879 163 48 122 chr6 21076553 21076590 -161338652 - L1MB8 LINE L1 -33 6145 6107 2342 103 0 3 chr6 21076590 21076902 -161338340 - AluSq SINE Alu 0 313 3 879 163 48 122 chr6 21076902 21077158 -161338084 - L1MB8 LINE L1 -71 6107 5874 373 338 56 5 chr6 21077155 21077371 -161337871 - L1MEd LINE L1 -5396 723 497 * 4094 129 134 155 chr6 21077752 21077841 -161337401 + L1MC3 LINE L1 6545 6634 -1151 282 56 0 0 chr6 21077841 21077877 -161337365 + (CA)n Simple_repeat Simple_repeat 1 36 0 4094 129 134 155 chr6 21077877 21078235 -161337007 + L1MC3 LINE L1 6634 6998 -787 1802 173 0 3 chr6 21078235 21078524 -161336718 + AluJb SINE Alu 6 293 -19 4094 129 134 155 chr6 21078524 21078676 -161336566 + L1MC3 LINE L1 6998 7152 -633 325 260 14 29 chr6 21078676 21078781 -161336461 + MLT1F1 LTR MaLR 45 143 -406 4094 129 134 155 chr6 21078781 21079342 -161335900 + L1MC3 LINE L1 7152 7785 0 22 0 0 0 chr6 21079498 21079520 -161335722 + AT_rich Low_complexity Low_complexity 1 22 0 2429 90 0 0 chr6 21079578 21079878 -161335364 + AluSc SINE Alu 1 300 -9 2746 26 0 3 chr6 21080177 21080487 -161334755 + AluY SINE Alu 1 309 -2 436 295 38 1 chr6 21080604 21080773 -161334469 + MIR SINE MIR 20 192 -63 429 274 16 59 chr6 21081888 21082074 -161333168 + L3 LINE CR1 1042 1219 -358 1038 201 45 19 chr6 21082091 21082434 -161332808 - MSTD LTR MaLR 0 396 1 419 271 150 19 chr6 21082434 21082641 -161332601 + L3 LINE CR1 1236 1469 -108 2236 105 6 16 chr6 21083190 21083503 -161331739 + AluSg SINE Alu 1 310 0 2329 138 32 12 chr6 21083513 21083918 -161331324 + L1MA8 LINE L1 5713 6125 -166 1213 127 0 0 chr6 21083928 21084085 -161331157 + FAM SINE Alu 11 167 -18 717 132 18 0 chr6 21084085 21084199 -161331043 + L1MA8 LINE L1 6120 6235 -56 4266 91 16 4 chr6 21084522 21085084 -161330158 + MER61E LTR ERV1 1 569 0 1885 147 25 0 chr6 21085477 21085763 -161329479 - AluJb SINE Alu -9 303 11 196 293 120 0 chr6 21086158 21086233 -161329009 - MIR SINE MIR -59 149 66 192 77 0 0 chr6 21087281 21087307 -161327935 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1640 165 8 4 chr6 21087310 21087570 -161327672 - AluJo SINE Alu -38 274 14 436 278 42 14 chr6 21087606 21087750 -161327492 + MIR SINE MIR 68 215 -47 1786 178 82 21 chr6 21087816 21088204 -161327038 - MLT2D LTR ERVL -2 412 1 180 0 0 0 chr6 21088210 21088230 -161327012 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 1642 160 18 32 chr6 21088231 21088513 -161326729 - AluJo SINE Alu -34 278 1 288 0 0 0 chr6 21088570 21088602 -161326640 + (CA)n Simple_repeat Simple_repeat 2 33 0 2770 88 3 0 chr6 21089369 21089723 -161325519 + THE1A LTR MaLR 1 355 0 1138 157 58 4 chr6 21091040 21091354 -161323888 + MLT1A1 LTR MaLR 1 365 0 4594 86 8 18 chr6 21093533 21094161 -161321081 + L1PA11 LINE L1 5366 5987 -187 181 274 0 0 chr6 21094306 21094357 -161320885 + MIR SINE MIR 168 218 -44 1361 62 28 6 chr6 21094373 21094550 -161320692 + L1PA11 LINE L1 5994 6174 0 23 0 0 0 chr6 21094833 21094856 -161320386 + AT_rich Low_complexity Low_complexity 1 23 0 2358 67 0 3 chr6 21095684 21095969 -161319273 - AluY SINE Alu -5 306 23 834 171 0 0 chr6 21095991 21096120 -161319122 + FLAM_C SINE Alu 3 131 -12 2206 108 7 7 chr6 21096559 21096854 -161318388 + AluSx SINE Alu 1 295 -17 192 356 55 0 chr6 21097013 21097086 -161318156 - MIR SINE MIR -185 77 1 1776 188 0 0 chr6 21097185 21097477 -161317765 - AluJo SINE Alu -16 296 5 1579 174 0 66 chr6 21097579 21097711 -161317531 + AluJo SINE Alu 1 140 -172 1892 121 0 81 chr6 21097711 21098045 -161317197 + AluSx SINE Alu 1 309 0 1579 174 0 66 chr6 21098045 21098228 -161317014 + AluJo SINE Alu 140 296 -16 25 31 0 0 chr6 21098303 21098335 -161316907 + AT_rich Low_complexity Low_complexity 1 32 0 2652 184 97 14 chr6 21098698 21099254 -161315988 + MER7C DNA MER2_type 1 602 0 253 301 75 21 chr6 21099261 21099354 -161315888 - L2 LINE L2 -36 3236 3139 2176 128 3 0 chr6 21099508 21099814 -161315428 - AluSx SINE Alu -5 307 1 2777 120 31 2 chr6 21100228 21100644 -161314598 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr6 21101029 21101057 -161314185 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1842 139 15 0 chr6 21101061 21101328 -161313914 - AluSg SINE Alu -37 273 3 1920 164 3 0 chr6 21101382 21101731 -161313511 - AluJo SINE Alu 0 350 1 1840 119 31 55 chr6 21101907 21102228 -161313014 - AluJo SINE Alu 0 314 1 351 0 0 0 chr6 21102551 21102590 -161312652 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 383 260 120 92 chr6 21102593 21102843 -161312399 - L2 LINE L2 -22 3250 2994 * 528 287 113 59 chr6 21102825 21103588 -161311654 - L2 LINE L2 -652 2662 1859 189 147 0 0 chr6 21103841 21103875 -161311367 + (T)n Simple_repeat Simple_repeat 1 34 0 581 231 13 0 chr6 21104632 21104788 -161310454 + C-rich Low_complexity Low_complexity 4 161 0 702 203 0 16 chr6 21104798 21104980 -161310262 + CT-rich Low_complexity Low_complexity 2 180 0 318 26 0 0 chr6 21104980 21105019 -161310223 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 981 141 0 0 chr6 21105024 21105166 -161310076 - AluSg/x SINE Alu -36 276 135 598 306 112 9 chr6 21105606 21105838 -161309404 - MIR SINE MIR 0 262 7 698 289 134 21 chr6 21105960 21106333 -161308909 + L1MC4a LINE L1 5375 5789 -2019 207 0 0 0 chr6 21106476 21106499 -161308743 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1754 165 26 23 chr6 21106509 21106818 -161308424 - AluJo SINE Alu -1 311 2 244 301 93 11 chr6 21107206 21107389 -161307853 + L1MC4a LINE L1 5793 5990 -1818 2259 120 0 0 chr6 21107722 21108022 -161307220 - AluSx SINE Alu -12 300 1 297 286 0 24 chr6 21108236 21108320 -161306922 + MIR3 SINE MIR 93 174 -34 2255 131 39 19 chr6 21108364 21108723 -161306519 - MER47A DNA MER2_type 0 366 1 302 241 15 144 chr6 21108785 21108980 -161306262 - MER5B DNA MER1_type -2 176 7 203 307 93 0 chr6 21109060 21109135 -161306107 - MIR SINE MIR -38 224 143 347 232 58 7 chr6 21109256 21109270 -161305972 + (TA)n Simple_repeat Simple_repeat 2 14 -150 309 26 0 0 chr6 21109270 21109308 -161305934 + (TG)n Simple_repeat Simple_repeat 2 39 0 347 232 58 7 chr6 21109308 21109448 -161305794 + (TA)n Simple_repeat Simple_repeat 14 164 0 448 244 16 31 chr6 21109717 21109844 -161305398 + MIR SINE MIR 21 145 -63 608 293 52 9 chr6 21109876 21110088 -161305154 + MIR SINE MIR 34 254 -8 276 221 0 159 chr6 21110837 21110950 -161304292 + MIR SINE MIR 168 262 0 2129 109 45 79 chr6 21111247 21111651 -161303591 + MLT1B LTR MaLR 1 390 0 499 310 75 5 chr6 21111736 21111949 -161303293 + MIR SINE MIR 35 262 0 3899 120 2 13 chr6 21111975 21112508 -161302734 - MER1A DNA MER1_type 0 527 1 798 154 60 0 chr6 21112886 21113035 -161302207 - L1 LINE L1 -838 5308 5151 771 95 35 9 chr6 21113687 21113803 -161301439 - L1MA7 LINE L1 0 6291 6173 1763 157 25 6 chr6 21113803 21114127 -161301115 - L1MA6 LINE L1 -252 6048 5719 1483 132 9 0 chr6 21114127 21114340 -161300902 - Charlie3 DNA MER1_type -2495 215 1 3134 176 11 5 chr6 21114349 21115280 -161299962 - L1MA6 LINE L1 -585 5706 4769 2154 127 0 0 chr6 21115302 21115602 -161299640 - AluSx SINE Alu -5 307 8 1429 199 18 31 chr6 21116196 21116482 -161298760 - AluJo SINE Alu -30 282 1 970 64 0 0 chr6 21116518 21116643 -161298599 - L1P LINE L1 -913 5233 5109 * 1064 43 51 0 chr6 21116635 21116773 -161298469 + L1P LINE L1 4241 4385 -1761 554 196 0 75 chr6 21116760 21116893 -161298349 - L1M3 LINE L1 -631 5552 5430 * 1134 215 35 101 chr6 21117166 21117194 -161298048 - MER93a LTR ERV1 0 402 374 2526 50 0 10 chr6 21117194 21117496 -161297746 - AluY SINE Alu -12 299 1 1134 215 35 101 chr6 21117496 21117891 -161297351 - MER93a LTR ERV1 -28 374 7 296 304 0 0 chr6 21117912 21118004 -161297238 - MIR3 SINE MIR -5 203 112 953 203 0 36 chr6 21118151 21118343 -161296899 - MER5A DNA MER1_type -2 187 3 2397 96 0 3 chr6 21118920 21119233 -161296009 - AluSx SINE Alu 0 312 1 2396 43 0 7 chr6 21120349 21120674 -161294568 + AluY SINE Alu 1 323 0 240 59 0 0 chr6 21121093 21121127 -161294115 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2164 114 0 19 chr6 21121129 21121444 -161293798 - AluSx SINE Alu -3 309 1 256 262 0 0 chr6 21122532 21122593 -161292649 + L1ME1 LINE L1 5704 5764 -400 2076 108 3 63 chr6 21122601 21122933 -161292309 + AluSx SINE Alu 1 312 0 441 257 144 44 chr6 21122934 21123248 -161291994 + L1ME1 LINE L1 5813 6334 0 562 231 8 8 chr6 21123421 21123538 -161291704 + L2 LINE L2 3195 3311 -2 2414 87 0 10 chr6 21124350 21124662 -161290580 - AluSc SINE Alu 0 309 1 220 267 205 31 chr6 21124785 21124946 -161290296 + MIR3 SINE MIR 20 208 0 1846 169 10 3 chr6 21125055 21125345 -161289897 - AluSx SINE Alu -20 292 1 24 77 0 0 chr6 21125632 21125684 -161289558 + AT_rich Low_complexity Low_complexity 1 52 0 359 247 184 32 chr6 21125755 21125829 -161289413 - L1ME3A LINE L1 -51 6119 6058 2244 101 7 0 chr6 21125829 21126125 -161289117 - AluSp SINE Alu -15 298 1 359 247 184 32 chr6 21126125 21126208 -161289034 - L1ME3A LINE L1 -112 6058 5938 2769 90 31 8 chr6 21126235 21126591 -161288651 - THE1B LTR MaLR 0 364 1 200 268 10 62 chr6 21127387 21127484 -161287758 - L2 LINE L2 -1 3271 3180 252 367 44 29 chr6 21127626 21127938 -161287304 - L2 LINE L2 -234 3038 2725 260 277 0 46 chr6 21127982 21128047 -161287195 - L2 LINE L2 -73 3199 3138 1580 175 80 30 chr6 21128060 21128398 -161286844 - MLT1A1 LTR MaLR 0 365 11 332 260 130 18 chr6 21128578 21128747 -161286495 - L2 LINE L2 -1155 2159 1972 293 270 79 0 chr6 21128885 21128974 -161286268 + MER5B DNA MER1_type 83 178 0 181 270 45 45 chr6 21128974 21129056 -161286186 - L2 LINE L2 -697 2617 2536 1109 205 29 9 chr6 21129463 21129673 -161285569 + MER58A DNA MER1_type 11 224 0 1657 104 97 15 chr6 21129711 21129970 -161285272 - L1PA13 LINE L1 -3 6160 5881 2150 122 7 0 chr6 21130737 21131031 -161284211 + AluSx SINE Alu 5 300 -12 196 264 14 56 chr6 21131166 21131238 -161284004 + L2 LINE L2 3226 3294 -19 219 268 145 14 chr6 21131651 21131789 -161283453 + L2 LINE L2 2539 2694 -620 1774 151 6 80 chr6 21131796 21132133 -161283109 + AluJo SINE Alu 1 312 0 436 325 18 12 chr6 21132246 21132409 -161282833 + L2 LINE L2 2895 3058 -214 3094 147 55 6 chr6 21132650 21133141 -161282101 - MLT2B2 LTR ERVL 0 515 1 2246 127 3 3 chr6 21133628 21133936 -161281306 + AluJb SINE Alu 1 308 -4 1808 169 52 92 chr6 21133965 21134079 -161281163 + MLT1C LTR MaLR 6 123 -344 1616 141 85 7 chr6 21134079 21134362 -161280880 + AluSx SINE Alu 1 305 -7 1808 169 52 92 chr6 21134362 21134725 -161280517 + MLT1C LTR MaLR 123 464 -3 234 0 0 0 chr6 21135739 21135765 -161279477 + (TG)n Simple_repeat Simple_repeat 2 27 0 719 239 150 45 chr6 21136228 21136541 -161278701 + L1ME4a LINE L1 5496 5838 -283 195 42 0 0 chr6 21138559 21138583 -161276659 + (A)n Simple_repeat Simple_repeat 1 24 0 24 53 0 0 chr6 21138968 21139006 -161276236 + AT_rich Low_complexity Low_complexity 1 38 0 984 272 98 39 chr6 21139226 21139664 -161275578 - LTR16B LTR ERVL 0 464 1 1385 213 115 18 chr6 21140606 21141006 -161274236 - L1M4 LINE L1 -846 5300 4862 464 295 90 6 chr6 21141246 21141306 -161273936 - MER5A DNA MER1_type -6 183 129 1711 169 8 0 chr6 21141306 21141573 -161273669 + AluJb SINE Alu 5 273 -39 464 295 90 6 chr6 21141573 21141668 -161273574 - MER5A DNA MER1_type -60 129 15 3071 76 0 13 chr6 21141859 21142239 -161273003 - THE1C LTR MaLR 0 375 1 2297 72 0 4 chr6 21142830 21143108 -161272134 + AluSg SINE Alu 1 277 -33 234 0 0 0 chr6 21143108 21143134 -161272108 + (CAA)n Simple_repeat Simple_repeat 2 27 0 616 216 27 0 chr6 21143548 21143659 -161271583 + MER81 DNA DNA 1 114 0 22 0 0 0 chr6 21144222 21144244 -161270998 + AT_rich Low_complexity Low_complexity 1 22 0 783 285 29 22 chr6 21144796 21145070 -161270172 - L1MC4a LINE L1 -1936 5872 5597 3436 136 23 11 chr6 21145580 21146101 -161269141 - MER1A DNA MER1_type 0 527 1 320 304 9 9 chr6 21148095 21148210 -161267032 - MIR SINE MIR -19 243 129 2323 78 3 7 chr6 21149413 21149708 -161265534 - AluY SINE Alu -17 294 1 30 0 0 0 chr6 21150323 21150353 -161264889 + AT_rich Low_complexity Low_complexity 1 30 0 1668 190 7 0 chr6 21150353 21150643 -161264599 + AluSx SINE Alu 1 292 -20 1166 129 36 0 chr6 21150648 21150842 -161264400 - L1MB3 LINE L1 0 6183 5983 2333 97 0 0 chr6 21151310 21151600 -161263642 - AluSq SINE Alu -23 290 1 222 319 56 76 chr6 21152736 21152796 -161262446 + MIR SINE MIR 24 84 -178 1894 96 4 11 chr6 21152796 21153057 -161262185 - AluSq SINE Alu -15 298 40 222 319 56 76 chr6 21153057 21153140 -161262102 + MIR SINE MIR 84 164 -98 * 501 341 24 20 chr6 21153125 21153371 -161261871 - MIR SINE MIR 0 262 16 294 29 0 0 chr6 21153458 21153493 -161261749 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 314 120 39 chr6 21154267 21154550 -161260692 + L2 LINE L2 2177 2482 -832 181 214 24 0 chr6 21156180 21156222 -161259020 - L2 LINE L2 -8 3305 3263 207 277 0 0 chr6 21156939 21156986 -161258256 + CT-rich Low_complexity Low_complexity 3 49 0 2361 90 3 0 chr6 21157123 21157433 -161257809 - AluSq SINE Alu -2 311 1 581 249 65 54 chr6 21158429 21158580 -161256662 - MIR SINE MIR -74 188 33 2241 119 0 3 chr6 21158580 21158882 -161256360 - AluSx SINE Alu -11 301 1 581 249 65 54 chr6 21158882 21158915 -161256327 - MIR SINE MIR -229 33 2 241 57 57 43 chr6 21159623 21159693 -161255549 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 455 229 51 0 chr6 21161452 21161570 -161253672 - L2 LINE L2 0 3313 3190 624 91 0 0 chr6 21161589 21161677 -161253565 + (TA)n Simple_repeat Simple_repeat 2 89 0 454 264 36 7 chr6 21162380 21162520 -161252722 + MIR SINE MIR 113 256 -6 262 265 0 39 chr6 21162561 21162663 -161252579 + L1ME LINE L1 5647 5744 -377 198 0 0 0 chr6 21162930 21162952 -161252290 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1913 161 0 10 chr6 21162967 21163266 -161251976 + AluJo SINE Alu 1 296 -16 2415 78 0 3 chr6 21163274 21163580 -161251662 + AluSg SINE Alu 1 305 -5 485 261 22 72 chr6 21164573 21164753 -161250489 + MIR SINE MIR 82 252 -10 590 216 0 16 chr6 21165235 21165360 -161249882 + MER3 DNA MER1_type 77 199 -10 341 330 74 83 chr6 21165798 21166137 -161249105 - L2 LINE L2 -27 3245 2910 260 321 71 9 chr6 21166260 21166372 -161248870 - MIR SINE MIR -96 166 48 889 199 0 79 chr6 21166732 21166761 -161248481 + MER3 DNA MER1_type 1 31 -178 2184 113 0 3 chr6 21166761 21167053 -161248189 + AluSg SINE Alu 1 291 -19 889 199 0 79 chr6 21167053 21167239 -161248003 + MER3 DNA MER1_type 31 199 -10 1629 147 9 59 chr6 21167680 21168000 -161247242 - AluJo SINE Alu -8 304 1 266 313 146 0 chr6 21168030 21168126 -161247116 + L2 LINE L2 3151 3260 -12 358 305 8 15 chr6 21168347 21168478 -161246764 - MER94 DNA DNA 0 134 5 7460 117 52 29 chr6 21169198 21169756 -161245486 - Tigger3b DNA MER2_type -1797 1231 688 2108 104 18 0 chr6 21169756 21170071 -161245171 + AluSp SINE Alu 1 320 0 7460 117 52 29 chr6 21170071 21170711 -161244531 - Tigger3b DNA MER2_type -2340 688 3 2945 0 0 0 chr6 21171338 21171649 -161243593 - AluYa5 SINE Alu 0 311 1 290 227 53 27 chr6 21174037 21174112 -161241130 - MER5B DNA MER1_type -6 172 96 * 297 330 43 0 chr6 21174106 21174200 -161241042 + L2 LINE L2 3173 3270 -2 214 349 64 0 chr6 21174418 21174527 -161240715 - L2 LINE L2 0 3272 3157 343 263 88 9 chr6 21175062 21175176 -161240066 - MIR SINE MIR -114 148 26 550 226 8 16 chr6 21176078 21176202 -161239040 - MER5B DNA MER1_type -55 123 1 268 275 0 84 chr6 21176215 21176346 -161238896 - MIR SINE MIR -67 141 22 2242 138 32 19 chr6 21177836 21178039 -161237203 - MLT1B LTR MaLR -11 379 167 2221 111 7 7 chr6 21178039 21178345 -161236897 - AluSx SINE Alu -6 306 1 2242 138 32 19 chr6 21178345 21178512 -161236730 - MLT1B LTR MaLR -223 167 4 249 313 35 17 chr6 21178677 21178792 -161236450 - L1MC/D LINE L1 -2247 5561 5445 2075 122 3 3 chr6 21178818 21179106 -161236136 + AluSg SINE Alu 1 288 -22 386 252 30 23 chr6 21179239 21179370 -161235872 - L1ME4a LINE L1 -252 5869 5738 207 100 0 0 chr6 21179971 21180001 -161235241 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 222 118 0 0 chr6 21181319 21181353 -161233889 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2272 92 0 3 chr6 21181400 21181695 -161233547 - AluSg SINE Alu -7 303 10 219 355 65 18 chr6 21181850 21182019 -161233223 + MIR SINE MIR 20 196 -66 228 361 34 0 chr6 21182082 21182201 -161233041 + MIR3 SINE MIR 85 207 -1 2095 114 0 4 chr6 21182428 21182709 -161232533 - AluSx SINE Alu -32 280 1 292 328 18 47 chr6 21183157 21183328 -161231914 - MIR SINE MIR -50 212 47 1926 130 22 0 chr6 21183392 21183695 -161231547 + AluSx SINE Alu 1 309 0 993 279 108 16 chr6 21183883 21184316 -161230926 - LTR16C LTR ERVL -1 490 18 2225 123 0 0 chr6 21184735 21185045 -161230197 + AluY SINE Alu 1 310 -1 25 31 0 0 chr6 21185100 21185132 -161230110 + AT_rich Low_complexity Low_complexity 1 32 0 2557 268 104 36 chr6 21185177 21186442 -161228800 + L1ME3A LINE L1 2970 4321 -1825 727 236 66 39 chr6 21186472 21186730 -161228512 + L1ME3A LINE L1 5879 6143 -27 438 33 115 0 chr6 21186899 21186960 -161228282 + MADE1 DNA Mariner 13 80 0 1204 245 129 68 chr6 21187220 21188050 -161227192 - HAL1 LINE L1 -79 2428 1548 607 236 60 6 chr6 21188132 21188314 -161226928 - HAL1 LINE L1 -1089 1418 1227 536 358 54 15 chr6 21188513 21188829 -161226413 - L2 LINE L2 -260 3053 2725 3105 179 52 92 chr6 21188837 21189684 -161225558 + L1MC4 LINE L1 7221 8033 -9 885 298 174 13 chr6 21189687 21190217 -161225025 - L2 LINE L2 -609 2705 2091 2738 98 11 0 chr6 21191203 21191560 -161223682 - L1PB1 LINE L1 0 6151 5791 250 93 0 0 chr6 21191570 21191613 -161223629 + LTR66 LTR ERVL 394 436 -174 273 234 0 0 chr6 21191615 21191679 -161223563 + L1MC4 LINE L1 6640 6703 -1339 252 220 0 0 chr6 21191637 21191687 -161223555 - L1MC4 LINE L1 -1339 6703 6654 * 218 220 17 0 chr6 21191721 21191780 -161223462 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 3232 82 7 7 chr6 21191780 21192209 -161223033 - L1P5 LINE L1 -360 5791 5363 230 93 0 23 chr6 21192209 21192252 -161222990 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 7683 27 0 0 chr6 21192252 21193689 -161221553 - L1PA3 LINE L1 -24 6131 4695 * 15037 173 35 12 chr6 21193677 21198352 -161216890 - L1PBa LINE L1 -771 6091 1311 3112 151 13 17 chr6 21198354 21198878 -161216364 - L1PBa LINE L1 -5708 1155 634 1147 150 26 0 chr6 21198878 21199071 -161216171 - L1PBa LINE L1 -6663 200 3 214 234 21 0 chr6 21199118 21199165 -161216077 + L2 LINE L2 3219 3266 -6 316 285 16 24 chr6 21199339 21199462 -161215780 - MIR SINE MIR -77 185 64 536 309 14 24 chr6 21199734 21199941 -161215301 + MIR SINE MIR 46 250 -12 1778 160 38 7 chr6 21200202 21200495 -161214747 + AluJb SINE Alu 1 302 -10 1839 170 150 42 chr6 21200530 21200982 -161214260 + MLT1D LTR MaLR 4 504 -1 332 260 24 65 chr6 21201021 21201144 -161214098 + L2 LINE L2 2602 2719 -595 263 279 35 0 chr6 21201173 21201259 -161213983 + L2 LINE L2 3183 3271 -1 594 184 0 0 chr6 21201339 21201437 -161213805 - Tigger7 DNA MER2_type 0 2491 2394 1575 192 0 0 chr6 21201440 21201701 -161213541 - Tigger7 DNA MER2_type -469 264 4 230 271 0 24 chr6 21201705 21201790 -161213452 - HAL1b LINE L1 -91 1257 1175 2177 205 93 17 chr6 21202774 21203257 -161211985 - MLT2B1 LTR ERVL 0 520 1 299 291 28 44 chr6 21203499 21203681 -161211561 - L1ME4a LINE L1 -215 5906 5728 216 163 0 0 chr6 21205051 21205094 -161210148 + (CAA)n Simple_repeat Simple_repeat 3 45 0 183 344 33 0 chr6 21205260 21205321 -161209921 + L3 LINE CR1 1514 1576 -1 245 296 0 37 chr6 21205734 21205815 -161209427 - L2 LINE L2 -13 3259 3182 815 155 14 0 chr6 21205924 21206066 -161209176 + L1MA6 LINE L1 6155 6298 -2 2100 256 46 11 chr6 21206225 21206275 -161208967 - L1MD2 LINE L1 -396 5963 5916 2348 165 64 12 chr6 21206275 21206680 -161208562 + MSTB LTR MaLR 1 426 0 2100 256 46 11 chr6 21206680 21207239 -161208003 - L1MD2 LINE L1 -443 5916 5333 212 172 52 0 chr6 21207239 21207297 -161207945 + (TA)n Simple_repeat Simple_repeat 2 62 0 341 234 206 9 chr6 21208107 21208214 -161207028 - MIR SINE MIR -115 147 20 1118 179 115 8 chr6 21210331 21210566 -161204676 + LOR1a LTR ERV1 238 497 0 1724 186 7 10 chr6 21211423 21211718 -161203524 + AluJo SINE Alu 1 294 -18 1536 184 223 39 chr6 21211958 21212415 -161202827 - MLT1F LTR MaLR 0 542 2 405 58 0 0 chr6 21212420 21212472 -161202770 + (TG)n Simple_repeat Simple_repeat 2 53 0 180 375 31 10 chr6 21212688 21212784 -161202458 + L2 LINE L2 3015 3112 -160 240 35 0 0 chr6 21213039 21213068 -161202174 + (CAT)n Simple_repeat Simple_repeat 1 29 0 476 308 110 9 chr6 21213792 21214019 -161201223 - MIR SINE MIR -1 261 12 2406 100 0 0 chr6 21215322 21215632 -161199610 - AluSx SINE Alu -2 310 1 896 149 0 8 chr6 21217885 21218041 -161197201 - AluJb SINE Alu 0 309 155 234 0 0 0 chr6 21218161 21218187 -161197055 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chr6 21218186 21218218 -161197024 + (CA)n Simple_repeat Simple_repeat 1 32 0 1530 190 13 30 chr6 21218777 21219082 -161196160 - AluJo SINE Alu -12 300 1 2341 114 0 0 chr6 21219805 21220111 -161195131 - AluSx SINE Alu -6 306 1 231 36 0 0 chr6 21220427 21220455 -161194787 + (TC)n Simple_repeat Simple_repeat 1 28 0 221 57 29 0 chr6 21220970 21221005 -161194237 + (TG)n Simple_repeat Simple_repeat 1 36 0 2278 100 0 17 chr6 21221080 21221380 -161193862 - AluSq SINE Alu -18 295 1 2357 117 10 0 chr6 21223693 21224002 -161191240 + AluSx SINE Alu 1 312 0 894 144 63 0 chr6 21224542 21224716 -161190526 + L1MA7 LINE L1 6104 6288 -3 1343 183 48 41 chr6 21225249 21225539 -161189703 - AluJo SINE Alu -20 292 1 214 282 209 9 chr6 21225763 21225873 -161189369 - MIR SINE MIR -44 218 87 258 312 118 0 chr6 21227683 21227776 -161187466 + MIR SINE MIR 49 152 -110 195 139 0 0 chr6 21228602 21228638 -161186604 + (T)n Simple_repeat Simple_repeat 1 36 0 2396 281 24 25 chr6 21228671 21229346 -161185896 + MER115 DNA AcHobo 3 676 -17 4858 111 0 0 chr6 21229569 21230246 -161184996 + L1PA13 LINE L1 5448 6124 -39 186 350 88 10 chr6 21230259 21230453 -161184789 + L2 LINE L2 2624 2832 -482 191 326 14 64 chr6 21232190 21232331 -161182911 + L2 LINE L2 2753 2886 -428 261 0 0 0 chr6 21232331 21232360 -161182882 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 527 252 91 24 chr6 21232363 21232573 -161182669 + MLT1G1 LTR MaLR 103 326 -269 701 271 21 5 chr6 21232799 21232991 -161182251 + MIR SINE MIR 53 247 -15 2335 71 0 0 chr6 21233499 21233814 -161181428 - AluY SINE Alu 0 315 1 404 291 122 5 chr6 21235027 21235223 -161180019 - MIR SINE MIR -15 247 29 1479 249 25 6 chr6 21235253 21235611 -161179631 - MLT1A1 LTR MaLR 0 365 1 196 346 13 13 chr6 21235931 21236009 -161179233 - MER5B DNA MER1_type -45 133 56 321 183 28 4 chr6 21236031 21236141 -161179101 - MER5A DNA MER1_type 0 189 35 238 262 47 84 chr6 21236140 21236247 -161178995 - MER5B DNA MER1_type -74 104 2 * 294 277 45 23 chr6 21236429 21236567 -161178675 + MIR3 SINE MIR 45 186 -22 349 247 160 40 chr6 21237441 21237591 -161177651 + MER5A DNA MER1_type 13 180 -9 1740 157 3 42 chr6 21238070 21238382 -161176860 - MLT1B LTR MaLR 0 390 91 416 143 0 0 chr6 21238384 21238447 -161176795 - MLT1C LTR MaLR -115 352 290 * 463 188 27 89 chr6 21238438 21238550 -161176692 - MLT1C LTR MaLR -362 105 1 201 39 0 0 chr6 21239198 21239224 -161176018 + (CA)n Simple_repeat Simple_repeat 2 27 0 4269 132 59 48 chr6 21240027 21240280 -161174962 - pTR5 LTR ERV1 -25 2212 1963 187 53 26 26 chr6 21240280 21240318 -161174924 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4269 132 59 48 chr6 21240318 21241309 -161173933 - pTR5 LTR ERV1 -274 1963 7 2041 101 18 0 chr6 21241310 21241586 -161173656 + AluSp SINE Alu 32 312 -1 886 198 184 43 chr6 21241659 21242096 -161173146 - MLT1E1 LTR MaLR -74 580 1 3633 170 32 17 chr6 21243142 21243865 -161171377 + L1MB4 LINE L1 5446 6179 -1 181 233 47 35 chr6 21244208 21244294 -161170948 + L3b LINE CR1 1146 1232 -351 263 238 70 98 chr6 21244313 21244456 -161170786 + MIR3 SINE MIR 20 158 -50 243 311 17 25 chr6 21244460 21244579 -161170663 - L2 LINE L2 0 3272 3155 226 200 30 80 chr6 21244903 21245003 -161170239 - L2 LINE L2 -656 2658 2564 252 0 0 0 chr6 21245699 21245727 -161169515 + (GA)n Simple_repeat Simple_repeat 2 29 0 207 69 0 0 chr6 21245930 21245959 -161169283 + (TG)n Simple_repeat Simple_repeat 1 29 0 391 228 101 13 chr6 21246026 21246175 -161169067 - L1ME3A LINE L1 -96 6074 5913 2653 68 0 0 chr6 21246415 21246724 -161168518 + AluSg SINE Alu 1 309 -1 469 183 70 9 chr6 21246929 21247044 -161168198 - MIR SINE MIR -62 200 79 26 30 0 0 chr6 21247165 21247198 -161168044 + AT_rich Low_complexity Low_complexity 1 33 0 463 286 54 112 chr6 21247258 21247706 -161167536 - L2 LINE L2 -42 3230 2809 3666 125 68 25 chr6 21249137 21250042 -161165200 - LTR12 LTR ERV1 0 714 3 1651 175 14 20 chr6 21250042 21250334 -161164908 + AluJo SINE Alu 10 299 -13 2081 173 68 5 chr6 21250340 21250739 -161164503 - MSTA LTR MaLR 0 428 5 451 224 75 9 chr6 21251018 21251182 -161164060 - MIR SINE MIR -63 145 20 2208 128 0 0 chr6 21251974 21252278 -161162964 - AluSx SINE Alu -8 304 1 867 156 25 0 chr6 21252289 21252449 -161162793 - L1MA8 LINE L1 -4 6287 6124 5545 125 36 19 chr6 21252593 21252914 -161162328 - L1MA8 LINE L1 -148 6143 5829 2233 97 0 31 chr6 21252914 21253097 -161162145 - AluSx SINE Alu -1 311 141 2298 95 3 0 chr6 21253097 21253392 -161161850 - AluY SINE Alu -15 296 1 2233 97 0 31 chr6 21253392 21253529 -161161713 - AluSx SINE Alu -171 141 1 5545 125 36 19 chr6 21253529 21254410 -161160832 - L1MA8 LINE L1 -462 5829 4906 2349 174 47 2 chr6 21254410 21254818 -161160424 + MSTB LTR MaLR 1 426 0 5545 125 36 19 chr6 21254818 21255049 -161160193 - L1MA8 LINE L1 -1385 4906 4680 298 272 56 16 chr6 21255449 21255574 -161159668 + MIR SINE MIR 71 200 -62 232 326 79 11 chr6 21257098 21257122 -161158120 + L3 LINE CR1 1425 1446 -131 2175 111 14 3 chr6 21257122 21257419 -161157823 + AluSx SINE Alu 1 300 -12 232 326 79 11 chr6 21257419 21257483 -161157759 + L3 LINE CR1 1446 1519 -58 480 328 37 31 chr6 21258682 21259139 -161156103 + L1MC4a LINE L1 5491 5950 -1858 382 114 29 0 chr6 21260588 21260658 -161154584 + (CA)n Simple_repeat Simple_repeat 1 72 0 1351 218 65 40 chr6 21260908 21261354 -161153888 - MLT1C LTR MaLR 0 467 11 437 299 82 90 chr6 21261386 21261693 -161153549 + L2 LINE L2 2724 3017 -255 371 68 0 243 chr6 21261693 21261796 -161153446 - MADE1 DNA Mariner -2 78 1 437 299 82 90 chr6 21261796 21262050 -161153192 + L2 LINE L2 3017 3271 -1 521 298 48 27 chr6 21263214 21263402 -161151840 - MIR SINE MIR -70 192 1 2160 119 0 0 chr6 21263428 21263722 -161151520 + AluSq SINE Alu 1 294 -19 500 179 19 0 chr6 21263722 21263828 -161151414 + (TATG)n Simple_repeat Simple_repeat 2 109 0 382 301 38 0 chr6 21264208 21264341 -161150901 + MIR3 SINE MIR 68 205 -3 222 62 0 0 chr6 21265041 21265073 -161150169 + (T)n Simple_repeat Simple_repeat 1 32 0 622 201 12 0 chr6 21265366 21265535 -161149707 - L1MA4 LINE L1 -8 6292 6122 359 303 56 43 chr6 21266406 21266710 -161148532 + L1ME4a LINE L1 5525 5832 -289 267 200 9 55 chr6 21266793 21266903 -161148339 + (TA)n Simple_repeat Simple_repeat 1 105 0 335 307 80 9 chr6 21267058 21267187 -161148055 + MIR SINE MIR 23 143 -65 228 256 23 12 chr6 21267297 21267383 -161147859 - L1ME LINE L1 -734 5436 5350 22 0 0 0 chr6 21267517 21267539 -161147703 + AT_rich Low_complexity Low_complexity 1 22 0 344 215 89 0 chr6 21267668 21267747 -161147495 + MER5A DNA MER1_type 9 94 -95 2227 111 0 19 chr6 21268272 21268579 -161146663 - AluSc SINE Alu -8 301 1 1872 121 24 113 chr6 21269146 21269560 -161145682 - MLT1B LTR MaLR -5 385 9 1195 230 94 40 chr6 21270503 21270877 -161144365 - MSTD LTR MaLR -2 394 1 1953 138 3 0 chr6 21270960 21271274 -161143968 - AluSx SINE Alu 0 315 1 437 329 21 0 chr6 21271658 21271801 -161143441 + MIR SINE MIR 1 146 -116 2625 241 123 14 chr6 21272338 21273236 -161142006 - MER69B DNA AcHobo -2 1224 230 295 269 13 0 chr6 21273240 21273318 -161141924 - MER69B DNA AcHobo -1124 102 24 1199 205 73 80 chr6 21273328 21273752 -161141490 - MLT1J1 LTR MaLR -25 421 1 2240 78 0 0 chr6 21275179 21275474 -161139768 + AluY SINE Alu 11 305 0 3588 148 56 3 chr6 21275479 21276142 -161139100 - L1MB3 LINE L1 -2 6181 5484 672 174 19 7 chr6 21276142 21276297 -161138945 + CT-rich Low_complexity Low_complexity 3 159 0 921 149 41 10 chr6 21276302 21276497 -161138745 - L1MB3 LINE L1 -691 5489 5289 207 277 0 0 chr6 21276954 21277001 -161138241 - L2 LINE L2 -9 3304 3258 1906 202 31 75 chr6 21279051 21279665 -161135577 + L1ME2 LINE L1 5578 6164 0 23 33 0 0 chr6 21279674 21279704 -161135538 + AT_rich Low_complexity Low_complexity 1 30 0 217 384 75 8 chr6 21279769 21279902 -161135340 - MER5A DNA MER1_type -2 187 46 308 361 101 12 chr6 21280341 21280510 -161134732 + L2 LINE L2 2869 3052 -220 378 329 89 14 chr6 21280757 21280903 -161134339 + L2 LINE L2 3116 3272 0 352 221 123 41 chr6 21281179 21281301 -161133941 + MIR SINE MIR 20 151 -111 197 250 39 39 chr6 21281902 21281954 -161133288 - MIR SINE MIR -193 69 18 835 208 58 0 chr6 21282037 21282210 -161133032 + MER5A DNA MER1_type 1 183 -6 302 318 246 17 chr6 21283638 21283874 -161131368 - L3 LINE CR1 -9 1568 1279 305 333 8 24 chr6 21283875 21283998 -161131244 - L3 LINE CR1 -427 1150 1030 698 248 44 26 chr6 21284076 21284302 -161130940 - L1ME1 LINE L1 -5 6161 5932 238 284 15 15 chr6 21285070 21285137 -161130105 + MIR SINE MIR 17 83 -125 384 184 0 0 chr6 21285173 21285249 -161129993 + MER53 DNA DNA 1 76 -113 397 359 29 6 chr6 21286816 21286986 -161128256 - MIR3 SINE MIR -3 205 32 246 326 69 29 chr6 21287003 21287178 -161128064 + MIR SINE MIR 14 195 -67 1215 275 64 30 chr6 21287188 21287728 -161127514 - MLT1F1 LTR MaLR 0 567 11 483 236 115 30 chr6 21288324 21288489 -161126753 + MER5A DNA MER1_type 7 185 -4 343 227 43 64 chr6 21288586 21288727 -161126515 - MER104 DNA Tc2 -15 165 28 2315 108 3 0 chr6 21288850 21289155 -161126087 - AluSq SINE Alu -7 306 1 554 239 76 35 chr6 21289168 21289365 -161125877 - L2 LINE L2 0 3313 3109 22 35 0 0 chr6 21291588 21291617 -161123625 + AT_rich Low_complexity Low_complexity 1 29 0 439 355 55 11 chr6 21291685 21291868 -161123374 + MIR SINE MIR 41 231 -31 185 302 0 23 chr6 21291834 21291877 -161123365 + L2 LINE L2 3203 3244 -28 * 324 214 96 86 chr6 21291985 21292172 -161123070 - L1ME4a LINE L1 -1 6120 5932 351 268 173 25 chr6 21292248 21292606 -161122636 - L1ME4a LINE L1 -227 5894 5484 417 198 0 10 chr6 21293967 21294068 -161121174 + L1M4 LINE L1 3937 4036 -2110 417 306 62 59 chr6 21294168 21294335 -161120907 - L2 LINE L2 -527 2787 2617 2029 134 7 7 chr6 21294335 21294634 -161120608 + AluJb SINE Alu 1 299 -13 417 306 62 59 chr6 21294634 21294790 -161120452 - L2 LINE L2 -697 2617 2463 434 257 70 12 chr6 21299013 21299184 -161116058 + MIR SINE MIR 82 262 0 356 299 48 30 chr6 21299709 21299876 -161115366 + LTR67 LTR ERVL 24 193 -364 180 0 0 0 chr6 21299948 21299968 -161115274 + (TTG)n Simple_repeat Simple_repeat 2 21 0 256 164 0 73 chr6 21300001 21300056 -161115186 - FRAM/FAM SINE Alu -134 41 1 367 304 22 7 chr6 21300144 21300279 -161114963 + LTR67 LTR ERVL 415 551 -6 1989 154 30 0 chr6 21300279 21300578 -161114664 + AluJb SINE Alu 1 308 -4 365 293 38 38 chr6 21301006 21301245 -161113997 + MLT1L LTR MaLR 369 607 -8 639 207 70 18 chr6 21301290 21301517 -161113725 - HsTC2 DNA Tc2 -28 1870 1632 567 290 36 10 chr6 21301511 21301704 -161113538 + LTR33 LTR ERVL 9 206 -315 * 400 263 8 8 chr6 21301913 21302031 -161113211 - HsTC2 DNA Tc2 -263 1635 1518 225 239 0 0 chr6 21302391 21302437 -161112805 - L2 LINE L2 -13 3300 3255 838 246 12 74 chr6 21302681 21302873 -161112369 + MIR SINE MIR 20 194 -68 2168 88 0 67 chr6 21302873 21303203 -161112039 + AluSg SINE Alu 1 308 -2 838 246 12 74 chr6 21303203 21303266 -161111976 + MIR SINE MIR 194 259 -3 300 254 82 9 chr6 21303835 21303945 -161111297 + MER5C DNA MER1_type 6 123 -201 263 77 0 77 chr6 21304104 21304156 -161111086 + MER5C DNA MER1_type 262 309 -15 354 316 63 57 chr6 21304233 21304391 -161110851 - MER91A DNA MER1_type -34 162 4 625 249 153 68 chr6 21304769 21305227 -161110015 + MLT1H LTR MaLR 44 540 -9 2134 102 13 7 chr6 21305333 21305636 -161109606 - AluSc SINE Alu -4 305 1 623 74 0 21 chr6 21305774 21305869 -161109373 + AluSg/x SINE Alu 214 306 -3 2397 84 0 0 chr6 21305869 21306180 -161109062 + AluY SINE Alu 1 311 0 2210 104 0 13 chr6 21306290 21306599 -161108643 + AluY SINE Alu 1 305 -6 2159 145 3 0 chr6 21306626 21306937 -161108305 + AluSq SINE Alu 2 313 0 2151 118 7 3 chr6 21309762 21310058 -161105184 + AluSx SINE Alu 1 297 -15 2113 186 89 43 chr6 21310579 21311062 -161104180 - MLT1D LTR MaLR 0 505 1 263 311 19 0 chr6 21311097 21311200 -161104042 + LTR37B LTR ERV1 16 120 -348 404 119 0 0 chr6 21311337 21311404 -161103838 + L1PA11 LINE L1 6108 6174 0 690 176 109 114 chr6 21311512 21311888 -161103354 + LTR37B LTR ERV1 95 468 0 23 0 0 0 chr6 21314842 21314865 -161100377 + AT_rich Low_complexity Low_complexity 1 23 0 258 254 52 45 chr6 21314873 21315007 -161100235 - MLT1J LTR MaLR -3 508 374 3202 19 5 0 chr6 21315092 21315462 -161099780 - L1PA4 LINE L1 0 6155 5784 527 255 150 45 chr6 21315852 21315994 -161099248 + MER102b DNA MER1_type 5 131 -1297 1931 133 3 3 chr6 21315994 21316280 -161098962 + AluSx SINE Alu 26 311 -1 527 255 150 45 chr6 21316280 21316423 -161098819 + MER102b DNA MER1_type 131 320 -21 2505 82 0 0 chr6 21317037 21317341 -161097901 + AluSc SINE Alu 1 304 -5 591 290 111 14 chr6 21317710 21317732 -161097510 - MIR SINE MIR -10 252 234 1759 159 36 28 chr6 21317732 21318090 -161097152 + MER46B DNA MER2_type 1 236 0 591 290 111 14 chr6 21318090 21318284 -161096958 - MIR SINE MIR -28 234 15 2085 134 3 0 chr6 21318415 21318707 -161096535 + AluSx SINE Alu 1 293 -19 587 311 109 0 chr6 21318879 21319117 -161096125 - L2 LINE L2 -1228 2086 1823 595 325 60 15 chr6 21319126 21319461 -161095781 + L1MEd LINE L1 11 360 -5759 1030 275 149 31 chr6 21319469 21320212 -161095030 + L1MEd LINE L1 409 1239 -4880 7343 159 41 55 chr6 21320345 21320680 -161094562 + L1MA6 LINE L1 3538 3876 -2424 185 0 40 0 chr6 21320680 21320705 -161094537 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7343 159 41 55 chr6 21320705 21322208 -161093034 + L1MA6 LINE L1 3876 5317 -983 1967 150 0 0 chr6 21322208 21322495 -161092747 + AluSx SINE Alu 1 287 -25 7343 159 41 55 chr6 21322495 21323460 -161091782 + L1MA6 LINE L1 5317 6294 -6 23 0 0 0 chr6 21323553 21323576 -161091666 + AT_rich Low_complexity Low_complexity 1 23 0 1118 191 94 14 chr6 21324095 21324456 -161090786 + L1ME2 LINE L1 5766 6155 -9 546 325 86 43 chr6 21324471 21324563 -161090679 + L1MEd LINE L1 2121 2208 -3921 2588 68 32 16 chr6 21324563 21324932 -161090310 + THE1C LTR MaLR 1 375 0 546 325 86 43 chr6 21324932 21325233 -161090009 + L1MEd LINE L1 2208 2531 -3598 336 254 54 16 chr6 21325420 21325605 -161089637 + L1MEd LINE L1 2761 2952 -3177 2667 216 83 32 chr6 21325638 21326541 -161088701 + L1ME1 LINE L1 5237 6184 0 637 286 88 54 chr6 21326576 21327080 -161088162 + L1MEd LINE L1 3079 3608 -2521 2152 111 7 0 chr6 21327648 21327937 -161087305 + AluSx SINE Alu 15 305 -7 186 264 207 0 chr6 21328263 21328350 -161086892 - L2 LINE L2 -2489 825 721 343 332 94 53 chr6 21328537 21328856 -161086386 - L2 LINE L2 -2890 424 93 1960 126 0 118 chr6 21328865 21329247 -161085995 + MER1B DNA MER1_type 1 337 0 2155 115 11 0 chr6 21329392 21329679 -161085563 - AluSg SINE Alu -14 296 7 431 261 150 49 chr6 21329679 21329905 -161085337 + L1ME4a LINE L1 5633 5825 -296 1948 191 34 15 chr6 21330245 21330705 -161084537 - MLT1F LTR MaLR 0 542 75 231 260 50 10 chr6 21330696 21330796 -161084446 - LTR16C LTR ERVL -387 104 1 * 22 0 0 0 chr6 21330961 21330983 -161084259 + AT_rich Low_complexity Low_complexity 1 22 0 370 327 13 53 chr6 21331056 21331206 -161084036 - L3 LINE CR1 -8 1569 1426 1062 51 11 34 chr6 21332158 21332333 -161082909 + (TTTC)n Simple_repeat Simple_repeat 3 173 0 6660 79 13 58 chr6 21332334 21333856 -161081386 - SVA Other Other -518 1366 433 5836 61 20 61 chr6 21333919 21334822 -161080420 - SVA Other Other -520 866 1 225 0 0 0 chr6 21334824 21334849 -161080393 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 205 137 59 0 chr6 21334861 21334912 -161080330 + CT-rich Low_complexity Low_complexity 3 56 0 632 327 26 43 chr6 21335344 21335647 -161079595 - L2 LINE L2 0 3313 3016 263 158 6 232 chr6 21335788 21335965 -161079277 + L1MC3 LINE L1 6975 7111 -674 305 242 0 0 chr6 21335976 21336042 -161079200 + MLT1F1 LTR MaLR 60 125 -442 2732 152 75 2 chr6 21336042 21336562 -161078680 + L1MD3 LINE L1 7404 7961 -34 658 142 117 25 chr6 21336793 21336913 -161078329 - FLAM_C SINE Alu -12 131 1 201 300 50 0 chr6 21336947 21337007 -161078235 + L2 LINE L2 3251 3313 0 300 366 11 26 chr6 21337036 21337227 -161078015 - L2 LINE L2 -511 2803 2616 395 287 58 43 chr6 21337658 21337846 -161077396 - MLT1J2 LTR MaLR -215 235 45 224 289 0 66 chr6 21337923 21337999 -161077243 + L2 LINE L2 3116 3186 -86 1603 233 8 14 chr6 21338031 21338400 -161076842 + MLT1F LTR MaLR 2 368 -174 2172 104 0 0 chr6 21338522 21338828 -161076414 + AluSg SINE Alu 1 306 0 329 356 37 12 chr6 21339926 21340089 -161075153 - MIR3 SINE MIR -3 205 39 200 259 84 127 chr6 21340274 21340440 -161074802 + MIR3 SINE MIR 16 174 -34 340 295 0 48 chr6 21341440 21341545 -161073697 - L2 LINE L2 0 3313 3214 457 246 161 33 chr6 21341567 21341778 -161073464 + L2 LINE L2 2419 2656 -658 835 267 35 69 chr6 21341798 21342173 -161073069 + L2 LINE L2 2937 3298 -15 2166 97 0 39 chr6 21342963 21343295 -161071947 - AluSg SINE Alu 0 310 1 325 305 92 0 chr6 21343429 21343560 -161071682 + MIR3 SINE MIR 40 182 -26 315 151 70 23 chr6 21345708 21345794 -161069448 - MER58 DNA MER1_type -15 2405 2316 1709 198 3 3 chr6 21345907 21346210 -161069032 + AluJo SINE Alu 9 311 -1 1444 158 133 50 chr6 21346248 21346647 -161068595 + MSTB1 LTR MaLR 1 432 0 1005 320 69 53 chr6 21347187 21347755 -161067487 + L3 LINE CR1 328 904 -673 344 255 21 11 chr6 21348009 21348103 -161067139 + MER5A DNA MER1_type 71 165 -24 284 342 86 8 chr6 21348601 21348718 -161066524 + L2 LINE L2 3188 3313 0 1254 87 0 0 chr6 21349585 21349746 -161065496 + AluSg/x SINE Alu 140 300 -12 250 195 24 24 chr6 21349749 21349831 -161065411 - MER112 DNA MER1_type -143 117 36 1817 147 55 0 chr6 21350078 21350370 -161064872 + AluJo SINE Alu 5 312 0 186 308 39 58 chr6 21353876 21353980 -161061262 - MIR SINE MIR -14 248 147 7735 197 67 27 chr6 21354046 21358913 -161056329 - L1PA16 LINE L1 0 6869 1661 1392 146 0 0 chr6 21358907 21359106 -161056136 - L1PA16 LINE L1 -6646 203 5 * 285 146 0 0 chr6 21359188 21359236 -161056006 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 286 235 59 12 chr6 21359214 21359299 -161055943 - L1MC4 LINE L1 -1340 6702 6614 2026 154 3 3 chr6 21359755 21360066 -161055176 - AluSx SINE Alu -1 311 1 217 204 0 37 chr6 21360368 21360422 -161054820 + L2 LINE L2 3262 3313 0 681 258 92 0 chr6 21361326 21361489 -161053753 + MIR SINE MIR 12 189 -73 483 60 0 0 chr6 21361517 21361584 -161053658 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 215 15 0 chr6 21361584 21361649 -161053593 + MIR SINE MIR 197 262 0 274 245 64 21 chr6 21363549 21363643 -161051599 - MIR3 SINE MIR -10 198 101 203 208 42 0 chr6 21363811 21363859 -161051383 + L2 LINE L2 3222 3271 -1 188 328 0 15 chr6 21366077 21366144 -161049098 - MIR SINE MIR -84 124 59 180 77 0 0 chr6 21366151 21366177 -161049065 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 590 184 0 0 chr6 21366181 21366279 -161048963 + Tigger3(Golem) DNA MER2_type 1 98 -2931 389 191 29 0 chr6 21366277 21366345 -161048897 + MLT1B LTR MaLR 299 368 -22 * 198 330 40 30 chr6 21367128 21367228 -161048014 + L2 LINE L2 3121 3221 -51 1544 241 45 8 chr6 21368314 21368716 -161046526 + L1ME1 LINE L1 5749 6165 -1 2432 99 0 0 chr6 21368918 21369231 -161046011 + AluSq SINE Alu 1 313 0 251 232 81 40 chr6 21369256 21369355 -161045887 - MER103 DNA DNA -9 157 55 232 250 0 19 chr6 21369502 21369554 -161045688 - L3 LINE CR1 -1 1576 1526 191 133 0 0 chr6 21371934 21371964 -161043278 + L2 LINE L2 3277 3306 -7 375 41 0 0 chr6 21372130 21372179 -161043063 + (GA)n Simple_repeat Simple_repeat 2 50 0 2593 66 0 0 chr6 21372405 21372709 -161042533 + AluY SINE Alu 1 304 -7 429 272 64 67 chr6 21372710 21372921 -161042321 - MIR SINE MIR -4 258 45 4356 173 81 26 chr6 21372922 21373585 -161041657 + MER6 DNA MER2_type 1 626 -239 2151 79 22 4 chr6 21373585 21373863 -161041379 + AluY SINE Alu 1 283 -28 198 0 0 0 chr6 21373863 21373885 -161041357 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4356 173 81 26 chr6 21373885 21374040 -161041202 + MER6 DNA MER2_type 625 865 0 447 258 73 22 chr6 21374085 21374263 -161040979 + MIR SINE MIR 69 255 -7 207 316 18 0 chr6 21374870 21374927 -161040315 + L2 LINE L2 3252 3309 -4 228 179 54 18 chr6 21375039 21375095 -161040147 - HAL1 LINE L1 -999 1508 1451 3695 46 7 0 chr6 21375803 21376235 -161039007 - L1PA8 LINE L1 -1 6171 5737 290 237 75 43 chr6 21377717 21377810 -161037432 + MIR SINE MIR 45 140 -68 2528 69 3 0 chr6 21378219 21378522 -161036720 - AluY SINE Alu -7 304 1 253 246 82 118 chr6 21378832 21378942 -161036300 + MIR SINE MIR 48 153 -55 451 333 13 13 chr6 21378948 21379104 -161036138 - MER5B DNA MER1_type 0 178 23 3045 158 41 16 chr6 21379318 21379825 -161035417 + MLT2B1 LTR ERVL 1 520 0 258 32 0 0 chr6 21379986 21380017 -161035225 + (TG)n Simple_repeat Simple_repeat 1 31 0 613 283 53 35 chr6 21380154 21380189 -161035053 - MIR SINE MIR -21 241 208 1833 146 3 59 chr6 21380189 21380512 -161034730 - AluJb SINE Alu -7 305 1 613 283 53 35 chr6 21380512 21380702 -161034540 - MIR SINE MIR -54 208 12 22 0 0 0 chr6 21381199 21381221 -161034021 + AT_rich Low_complexity Low_complexity 1 22 0 1348 90 0 124 chr6 21381221 21381455 -161033787 - AluSg/x SINE Alu -26 286 82 936 260 72 40 chr6 21382299 21382676 -161032566 + L2 LINE L2 2924 3312 -1 317 226 12 0 chr6 21382684 21382768 -161032474 + GA-rich Low_complexity Low_complexity 1 85 0 9416 220 63 30 chr6 21385375 21386002 -161029240 + L1M3 LINE L1 2533 3138 -3042 1920 151 3 25 chr6 21386002 21386321 -161028921 + AluSx SINE Alu 1 312 0 9416 220 63 30 chr6 21386321 21387782 -161027460 + L1M3 LINE L1 3138 4729 -1451 2375 75 0 16 chr6 21387782 21388089 -161027153 + AluY SINE Alu 1 302 -9 9416 220 63 30 chr6 21388089 21388877 -161026365 + L1M3 LINE L1 4729 5489 -691 2465 39 11 0 chr6 21389043 21389326 -161025916 + AluY SINE Alu 1 286 -25 198 0 0 0 chr6 21389336 21389358 -161025884 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 327 345 53 9 chr6 21389437 21389550 -161025692 + HAL1b LINE L1 66 183 -1165 371 257 106 17 chr6 21389552 21389731 -161025511 + HAL1b LINE L1 1117 1311 -37 25 51 0 0 chr6 21389755 21389794 -161025448 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr6 21389884 21389933 -161025309 + AT_rich Low_complexity Low_complexity 1 49 0 491 198 0 11 chr6 21390872 21390963 -161024279 - Tigger5 DNA MER2_type 0 2323 2234 253 351 52 30 chr6 21392155 21392423 -161022819 + L2 LINE L2 2698 2971 -343 505 288 55 0 chr6 21392951 21393097 -161022145 - LTR67 LTR ERVL -11 546 393 231 282 45 55 chr6 21393246 21393356 -161021886 - LTR67 LTR ERVL -356 201 93 2745 196 133 75 chr6 21394279 21394568 -161020674 - L1MC3 LINE L1 -91 7694 7423 1771 99 0 0 chr6 21394568 21394791 -161020451 + AluSc SINE Alu 1 223 -86 2745 196 133 75 chr6 21394791 21395436 -161019806 - L1MC3 LINE L1 -362 7423 6706 455 275 112 39 chr6 21396109 21396287 -161018955 + MIR SINE MIR 63 253 -9 236 250 17 0 chr6 21396862 21396922 -161018320 + (TG)n Simple_repeat Simple_repeat 2 62 0 892 226 36 9 chr6 21397480 21397701 -161017541 + L1ME3A LINE L1 5939 6165 -5 249 111 156 0 chr6 21397707 21397752 -161017490 + L1MC1 LINE L1 5777 5828 -505 975 169 6 0 chr6 21397766 21397926 -161017316 + L1MC1 LINE L1 5956 6116 -217 2430 154 73 5 chr6 21397928 21398325 -161016917 - MSTB LTR MaLR 0 426 3 1474 159 56 0 chr6 21398326 21398578 -161016664 + L1MC1 LINE L1 6061 6326 -7 32 26 0 0 chr6 21398609 21398648 -161016594 + AT_rich Low_complexity Low_complexity 1 39 0 285 329 41 35 chr6 21399236 21399406 -161015836 - L2 LINE L2 -93 3179 3009 661 152 88 16 chr6 21399462 21399587 -161015655 + FRAM SINE Alu 1 40 0 268 209 90 0 chr6 21400227 21400294 -161014948 - MER91C DNA MER1_type -35 105 33 811 157 0 7 chr6 21400460 21400607 -161014635 + L1MC3 LINE L1 6943 7088 -697 266 216 102 57 chr6 21400614 21400702 -161014540 + MLT1F1 LTR MaLR 33 124 -443 2904 156 11 85 chr6 21400703 21401216 -161014026 + L1MD3 LINE L1 7403 7862 -133 2306 108 0 0 chr6 21401216 21401521 -161013721 + AluSq SINE Alu 1 305 -8 2904 156 11 85 chr6 21401521 21401641 -161013601 + L1MD3 LINE L1 7862 7989 -6 584 294 35 41 chr6 21401736 21401933 -161013309 + MIR SINE MIR 48 243 -19 548 118 24 0 chr6 21402050 21402135 -161013107 - L1MA4 LINE L1 -6 6294 6208 2158 110 3 7 chr6 21402165 21402474 -161012768 + AluSx SINE Alu 1 308 -4 2053 101 34 24 chr6 21403068 21403364 -161011878 - AluSq SINE Alu -13 300 2 1152 188 34 5 chr6 21403666 21403874 -161011368 - MER20 DNA MER1_type -5 214 1 182 245 41 0 chr6 21404686 21404735 -161010507 - L2 LINE L2 -2 3311 3261 276 186 0 0 chr6 21405310 21405369 -161009873 + (TG)n Simple_repeat Simple_repeat 1 59 0 207 108 27 0 chr6 21405876 21405913 -161009329 + (CAA)n Simple_repeat Simple_repeat 3 40 0 406 288 0 61 chr6 21405922 21406054 -161009188 - MIR3 SINE MIR -84 124 1 2171 121 3 0 chr6 21410661 21410966 -161004276 - AluSx SINE Alu -6 306 1 987 181 12 0 chr6 21414533 21414704 -161000538 + MER5B DNA MER1_type 6 178 0 465 286 21 7 chr6 21414716 21414856 -161000386 - MER5B DNA MER1_type -5 173 32 201 39 0 0 chr6 21415094 21415120 -161000122 + (A)n Simple_repeat Simple_repeat 1 26 0 198 239 0 0 chr6 21415810 21415881 -160999361 + (TG)n Simple_repeat Simple_repeat 2 72 0 876 193 35 12 chr6 21417929 21418100 -160997142 - MER45A DNA AcHobo 0 178 4 5317 111 96 126 chr6 21418491 21420070 -160995172 + pTR5 LTR ERV1 741 2438 0 3418 141 32 17 chr6 21420629 21421219 -160994023 + L1MA9 LINE L1 5714 6312 0 267 229 36 136 chr6 21423351 21423424 -160991818 + MIR3 SINE MIR 31 85 -123 1764 193 0 10 chr6 21423424 21423735 -160991507 - AluJo SINE Alu -4 308 1 267 229 36 136 chr6 21423735 21423801 -160991441 + MIR3 SINE MIR 85 156 -52 337 204 69 0 chr6 21424831 21424908 -160990334 - MIR SINE MIR -88 120 35 315 266 85 96 chr6 21425755 21425905 -160989337 + MER5A DNA MER1_type 4 153 -36 2492 70 3 0 chr6 21425905 21426203 -160989039 - AluSp SINE Alu -14 299 1 315 266 85 96 chr6 21426203 21426240 -160989002 + MER5A DNA MER1_type 153 189 0 * 445 270 66 51 chr6 21426240 21426460 -160988782 - MIR3 SINE MIR -46 216 1 934 217 40 54 chr6 21426529 21426805 -160988437 - L1M4 LINE L1 -1019 5127 4856 223 277 40 30 chr6 21427067 21427141 -160988101 + MIR3 SINE MIR 101 178 -30 2253 108 3 10 chr6 21427141 21427455 -160987787 - AluSx SINE Alu 0 312 1 223 277 40 30 chr6 21427455 21427481 -160987761 + MIR3 SINE MIR 178 202 -6 342 318 166 15 chr6 21428790 21429127 -160986115 - L2 LINE L2 -660 2654 2267 22 0 0 0 chr6 21431757 21431779 -160983463 + AT_rich Low_complexity Low_complexity 1 22 0 31 44 0 0 chr6 21433652 21433697 -160981545 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr6 21435246 21435281 -160979961 + GC_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr6 21435584 21435608 -160979634 + (CCG)n Simple_repeat Simple_repeat 3 26 0 220 226 0 69 chr6 21436211 21436313 -160978929 + G-rich Low_complexity Low_complexity 2 96 0 386 288 54 95 chr6 21439695 21439917 -160975325 + MIR SINE MIR 20 232 -30 2076 185 82 55 chr6 21439951 21440025 -160975217 - L1M4 LINE L1 -912 5234 5164 2235 106 3 0 chr6 21440025 21440317 -160974925 - AluSq SINE Alu -16 297 5 2076 185 82 55 chr6 21440317 21440465 -160974777 - L1M4 LINE L1 -982 5164 5022 936 218 35 0 chr6 21440465 21440635 -160974607 + MER45A DNA AcHobo 2 177 -1 2076 185 82 55 chr6 21440635 21441017 -160974225 - L1M4 LINE L1 -1124 5022 4612 1793 179 38 52 chr6 21441039 21441148 -160974094 + L1ME LINE L1 5254 5363 -803 1746 136 0 101 chr6 21441148 21441486 -160973756 + AluJb SINE Alu 1 304 -8 1793 179 38 52 chr6 21441486 21441801 -160973441 + L1ME LINE L1 5363 5672 -494 209 296 178 33 chr6 21444292 21444444 -160970798 - L2 LINE L2 -181 3091 2918 2640 48 0 3 chr6 21444509 21444821 -160970421 - AluY SINE Alu 0 311 1 206 160 60 0 chr6 21445039 21445089 -160970153 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 498 279 49 46 chr6 21445095 21445464 -160969778 - L1ME4a LINE L1 -33 6088 5719 1301 198 0 0 chr6 21448390 21448607 -160966635 + AluJb SINE Alu 1 217 -95 387 0 0 0 chr6 21449206 21449249 -160965993 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 211 341 45 38 chr6 21449267 21449399 -160965843 + MIR3 SINE MIR 33 165 -43 2321 102 0 0 chr6 21449402 21449697 -160965545 + AluSx SINE Alu 1 295 -17 1692 251 136 36 chr6 21449899 21450567 -160964675 - L2 LINE L2 -623 2691 1957 2268 118 0 0 chr6 21451571 21451877 -160963365 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 21452128 21452157 -160963085 + AT_rich Low_complexity Low_complexity 1 29 0 1191 204 27 4 chr6 21452645 21452905 -160962337 - L1MD3 LINE L1 0 7995 7730 219 316 0 25 chr6 21453415 21453494 -160961748 - L2 LINE L2 0 3272 3196 2345 91 0 3 chr6 21453833 21454129 -160961113 + AluSq SINE Alu 1 295 -18 394 306 50 88 chr6 21454226 21454543 -160960699 + L2 LINE L2 2962 3266 -6 338 344 8 0 chr6 21455231 21455362 -160959880 - Charlie8 DNA MER1_type -2157 260 129 23 0 0 0 chr6 21455493 21455516 -160959726 + AT_rich Low_complexity Low_complexity 1 23 0 2309 99 3 3 chr6 21456016 21456319 -160958923 + AluSx SINE Alu 1 303 -9 288 304 36 7 chr6 21456324 21456462 -160958780 + L1M4b LINE L1 1388 1529 -5330 345 303 8 30 chr6 21456902 21457034 -160958208 + MIR SINE MIR 25 153 -109 2374 78 3 0 chr6 21457081 21457374 -160957868 + AluY SINE Alu 1 294 -17 2205 111 0 10 chr6 21458405 21458712 -160956530 - AluSg SINE Alu -5 305 2 1796 166 32 9 chr6 21459121 21459465 -160955777 - L1MC3 LINE L1 0 7785 7434 301 329 117 41 chr6 21460178 21460432 -160954810 - L2 LINE L2 -225 3047 2780 312 256 64 26 chr6 21462076 21462232 -160953010 + L1ME4a LINE L1 5878 6039 -82 2135 97 0 10 chr6 21462289 21462598 -160952644 + AluSg1 SINE Alu 1 306 0 232 263 35 0 chr6 21462938 21462995 -160952247 + MIR SINE MIR 204 262 0 645 318 44 21 chr6 21463016 21463403 -160951839 + L1ME LINE L1 5282 5677 -444 584 254 127 47 chr6 21463401 21463810 -160951432 + L1MC4a LINE L1 5605 6046 -1762 * 22 56 0 0 chr6 21463881 21463917 -160951325 + AT_rich Low_complexity Low_complexity 1 36 0 297 311 47 0 chr6 21464018 21464124 -160951118 + L2 LINE L2 3203 3313 0 643 283 30 0 chr6 21464658 21464824 -160950418 - MER5B DNA MER1_type -1 177 7 358 274 14 0 chr6 21465539 21465612 -160949630 + MER5A DNA MER1_type 10 83 -106 1259 127 18 45 chr6 21465685 21465951 -160949291 - AluSg SINE Alu 0 356 97 3884 125 70 64 chr6 21465951 21467332 -160947910 + pTR5 LTR ERV1 743 2437 -1 347 101 241 0 chr6 21467332 21467411 -160947831 - AluSg SINE Alu -198 102 5 203 213 85 0 chr6 21467453 21467500 -160947742 + L2 LINE L2 3219 3269 -3 471 298 0 24 chr6 21470576 21470700 -160944542 - MER5B DNA MER1_type 0 178 58 3246 213 99 49 chr6 21470701 21471763 -160943479 - L1MD2 LINE L1 0 6753 5746 1911 163 0 20 chr6 21471763 21472107 -160943135 - MER1B DNA MER1_type 0 337 1 3246 213 99 49 chr6 21472107 21472174 -160943068 - L1MD2 LINE L1 -1007 5746 5684 2383 79 3 10 chr6 21472174 21472478 -160942764 + AluSp SINE Alu 10 311 -2 3246 213 99 49 chr6 21472478 21472530 -160942712 - L1MD2 LINE L1 -1069 5684 5526 934 168 56 0 chr6 21472530 21472709 -160942533 - L1PA15 LINE L1 -1 6164 5976 4863 209 67 54 chr6 21472709 21473008 -160942234 - L1MD2 LINE L1 -1810 4730 4436 2096 123 30 0 chr6 21473008 21473309 -160941933 - AluSx SINE Alu -2 310 1 4863 209 67 54 chr6 21473309 21475728 -160939514 - L1MD2 LINE L1 -2104 4436 1951 1316 192 80 4 chr6 21475728 21476004 -160939238 - AluJo SINE Alu -11 301 5 4863 209 67 54 chr6 21476004 21476788 -160938454 - L1MD2 LINE L1 -4589 1951 1179 2757 249 70 9 chr6 21476776 21477575 -160937667 - L1MD2 LINE L1 -5585 955 108 * 182 294 71 47 chr6 21477960 21478045 -160937197 + MIR SINE MIR 173 259 -3 330 329 234 13 chr6 21478416 21478814 -160936428 + L2 LINE L2 2045 2530 -784 460 292 142 34 chr6 21479150 21479503 -160935739 - MLT1I LTR MaLR 0 409 19 208 91 45 23 chr6 21479568 21479612 -160935630 + CT-rich Low_complexity Low_complexity 3 47 0 2141 116 20 3 chr6 21480128 21480429 -160934813 + AluSq SINE Alu 1 306 -7 2009 119 57 3 chr6 21480816 21481152 -160934090 + MER46B DNA MER2_type 8 236 0 298 260 41 112 chr6 21482714 21482883 -160932359 + MIR SINE MIR 81 237 -25 310 343 9 0 chr6 21482946 21483054 -160932188 - MIR SINE MIR -29 233 125 216 0 0 0 chr6 21484248 21484272 -160930970 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr6 21484330 21484352 -160930890 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 21484388 21484416 -160930826 + AT_rich Low_complexity Low_complexity 1 28 0 204 222 0 0 chr6 21485060 21485105 -160930137 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 246 349 148 0 chr6 21485142 21485311 -160929931 - MER117 DNA MER1_type -1 196 3 2474 71 3 0 chr6 21485733 21486029 -160929213 + AluSp SINE Alu 1 297 -16 255 31 0 0 chr6 21486030 21486062 -160929180 + (TA)n Simple_repeat Simple_repeat 1 32 0 299 317 10 0 chr6 21486805 21486906 -160928336 + (TA)n Simple_repeat Simple_repeat 2 103 0 297 258 0 0 chr6 21487010 21487103 -160928139 + (CATA)n Simple_repeat Simple_repeat 2 94 0 1563 164 101 9 chr6 21487104 21487422 -160927820 - MER7A DNA MER2_type -1 345 1 282 221 250 0 chr6 21487435 21487539 -160927703 - L1ME3A LINE L1 -7 6163 6034 524 231 75 42 chr6 21487539 21487751 -160927491 - L1M4 LINE L1 -1116 5030 4812 368 127 0 0 chr6 21487802 21487865 -160927377 - L1MA9 LINE L1 -38 6274 6212 1652 265 38 34 chr6 21487866 21488640 -160926602 - L1M4 LINE L1 -960 5186 4410 625 244 45 51 chr6 21488672 21488860 -160926382 + MLT2C1 LTR ERVL 13 187 -227 2338 107 0 0 chr6 21488860 21489170 -160926072 - AluSg SINE Alu 0 310 1 625 244 45 51 chr6 21489170 21489363 -160925879 + MLT2C1 LTR ERVL 187 380 -34 261 250 228 0 chr6 21490720 21490812 -160924430 - MIR SINE MIR -62 200 88 2593 175 32 20 chr6 21491149 21491652 -160923590 + MLT2B2 LTR ERVL 1 509 -6 2334 95 0 3 chr6 21494184 21494488 -160920754 + AluSx SINE Alu 1 303 -9 2443 69 0 13 chr6 21494689 21494992 -160920250 + AluY SINE Alu 1 299 -12 792 20 0 10 chr6 21495355 21495455 -160919787 + L1PB1 LINE L1 6053 6151 0 21 36 0 0 chr6 21495471 21495499 -160919743 + AT_rich Low_complexity Low_complexity 1 28 0 1706 208 83 55 chr6 21495673 21495714 -160919528 - L1ME1 LINE L1 -5 6161 6123 2401 94 0 7 chr6 21495714 21496022 -160919220 + AluSx SINE Alu 1 306 -6 1588 154 41 31 chr6 21496026 21496319 -160918923 - AluJo SINE Alu -16 296 1 1706 208 83 55 chr6 21496319 21496887 -160918355 - L1ME1 LINE L1 -45 6121 5530 886 150 0 0 chr6 21496889 21497016 -160918226 + FRAM SINE Alu 47 173 -3 1494 219 50 71 chr6 21497023 21497285 -160917957 - L1ME1 LINE L1 -881 5265 4999 2161 118 0 0 chr6 21497285 21497581 -160917661 - AluSx SINE Alu -16 296 1 1494 219 50 71 chr6 21497581 21497752 -160917490 - L1ME1 LINE L1 -1147 4999 4826 1635 150 93 31 chr6 21497752 21498105 -160917137 + THE1C LTR MaLR 1 375 0 1494 219 50 71 chr6 21498105 21498335 -160916907 - L1ME1 LINE L1 -1320 4826 4615 1449 12 0 0 chr6 21498817 21498982 -160916260 - L1PA3 LINE L1 0 6155 5991 2695 19 0 0 chr6 21498989 21499312 -160915930 + L1PA3 LINE L1 5666 5988 -167 2139 132 3 0 chr6 21499483 21499778 -160915464 - AluSx SINE Alu -16 296 1 2135 114 7 3 chr6 21500739 21501061 -160914181 - AluSq SINE Alu 0 323 1 627 180 40 47 chr6 21501106 21501256 -160913986 - Tigger1 DNA MER2_type -1 2417 2269 4073 127 25 22 chr6 21501325 21501883 -160913359 - Tigger1 DNA MER2_type -110 2308 1746 2015 77 59 21 chr6 21501883 21502170 -160913072 - AluY SINE Alu -13 298 1 4073 127 25 22 chr6 21502170 21502333 -160912909 - Tigger1 DNA MER2_type -672 1746 1585 1160 163 0 20 chr6 21502336 21502532 -160912710 - AluJ SINE Alu -1 311 120 228 35 0 0 chr6 21502532 21502561 -160912681 + (T)n Simple_repeat Simple_repeat 1 29 0 41241 30 21 1 chr6 21502564 21508590 -160906652 - L1HS LINE L1 0 6155 7 763 126 15 44 chr6 21508596 21508731 -160906511 - AluJ SINE Alu -171 131 1 8684 110 15 82 chr6 21508736 21509061 -160906181 - Tigger1 DNA MER2_type -835 1583 1238 2320 67 0 11 chr6 21509061 21509346 -160905896 + AluY SINE Alu 29 310 -1 8684 110 15 82 chr6 21509346 21510673 -160904569 - Tigger1 DNA MER2_type -1180 1238 45 988 189 5 11 chr6 21510659 21510850 -160904392 + AluJo SINE Alu 122 311 -1 * 947 164 16 22 chr6 21512552 21512735 -160902507 - AluSg/x SINE Alu -1 309 128 22 35 0 0 chr6 21512828 21512857 -160902385 + AT_rich Low_complexity Low_complexity 1 29 0 212 184 0 0 chr6 21512970 21513008 -160902234 + MIR SINE MIR 214 251 -11 300 304 49 10 chr6 21514192 21514294 -160900948 + MIR SINE MIR 69 174 -88 204 271 153 61 chr6 21514382 21514644 -160900598 - L2 LINE L2 -61 3252 2967 459 270 50 55 chr6 21515180 21515380 -160899862 + MIR SINE MIR 30 228 -34 2037 133 0 7 chr6 21515634 21515970 -160899272 + AluSx SINE Alu 1 334 0 2186 113 3 3 chr6 21516424 21516733 -160898509 - AluSx SINE Alu -3 309 1 326 301 36 0 chr6 21518546 21518629 -160896613 - MIR SINE MIR -115 147 62 206 197 40 66 chr6 21520203 21520279 -160894963 - L2 LINE L2 -78 3235 3162 237 310 106 42 chr6 21520457 21520741 -160894501 - L2 LINE L2 -463 2851 2550 381 304 87 0 chr6 21521009 21521124 -160894118 + L2 LINE L2 3182 3306 -7 408 302 119 38 chr6 21521249 21521484 -160893758 - MIR SINE MIR 0 262 9 246 237 17 0 chr6 21522024 21522083 -160893159 + L2 LINE L2 3253 3312 -1 180 0 0 0 chr6 21522577 21522597 -160892645 + (T)n Simple_repeat Simple_repeat 1 20 0 293 324 114 11 chr6 21523591 21523767 -160891475 - L3b LINE CR1 -261 1322 1129 1741 171 7 32 chr6 21525696 21526006 -160889236 + AluJo SINE Alu 5 306 -6 316 354 22 58 chr6 21526348 21526574 -160888668 - MIR SINE MIR -19 243 26 2135 120 0 10 chr6 21526654 21526953 -160888289 + AluSx SINE Alu 1 296 -16 11809 42 8 0 chr6 21526959 21529185 -160886057 - L1PA6 LINE L1 0 6154 3917 2258 100 10 7 chr6 21529458 21529757 -160885485 - AluSg SINE Alu -10 300 1 1031 147 13 0 chr6 21529798 21529954 -160885288 + AluSg/x SINE Alu 133 290 -20 4499 194 27 20 chr6 21530093 21530686 -160884556 + MER45B DNA AcHobo 37 641 -940 1970 158 6 3 chr6 21530686 21530997 -160884245 + AluSx SINE Alu 1 312 0 4499 194 27 20 chr6 21530997 21531400 -160883842 + MER45B DNA AcHobo 641 1040 0 735 268 128 38 chr6 21531840 21532317 -160882925 + HAL1 LINE L1 1984 2503 -4 278 294 220 67 chr6 21532340 21532758 -160882484 - LTR67 LTR ERVL -74 483 2 246 62 0 0 chr6 21532882 21532914 -160882328 + (TC)n Simple_repeat Simple_repeat 1 32 0 291 28 0 0 chr6 21533089 21533125 -160882117 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 7161 40 10 1 chr6 21533987 21534963 -160880279 + L1PA7 LINE L1 5165 6148 -6 259 292 15 0 chr6 21535616 21535681 -160879561 - L3 LINE CR1 -248 1329 1264 352 119 0 0 chr6 21535688 21535747 -160879495 - Alu SINE Alu 0 302 244 185 243 121 79 chr6 21535757 21535809 -160879433 - L3 LINE CR1 -321 1256 1208 2295 97 0 7 chr6 21535809 21536117 -160879125 + AluSq SINE Alu 1 306 -7 185 243 121 79 chr6 21536117 21536204 -160879038 - L3 LINE CR1 -369 1208 1111 * 208 398 70 8 chr6 21536187 21536315 -160878927 - L2 LINE L2 0 3272 3137 302 332 153 0 chr6 21536569 21536759 -160878483 - L1M4 LINE L1 -2972 3174 2956 1100 151 23 41 chr6 21537688 21537906 -160877336 + MER20 DNA MER1_type 6 219 0 371 247 0 0 chr6 21538059 21538148 -160877094 - Charlie8 DNA MER1_type -2245 172 84 198 182 0 76 chr6 21538531 21538597 -160876645 + MIR SINE MIR 154 214 -48 359 292 118 12 chr6 21539692 21539853 -160875389 + MER5A DNA MER1_type 9 186 -3 525 328 51 2 chr6 21539876 21540290 -160874952 - MLT1L LTR MaLR -79 536 35 2323 86 0 3 chr6 21540503 21540805 -160874437 - AluSq SINE Alu -12 301 1 206 355 40 0 chr6 21540847 21540923 -160874319 - MIR3 SINE MIR -16 192 114 4224 148 24 14 chr6 21541485 21542203 -160873039 - MER44D DNA MER2_type 0 605 9 262 306 95 48 chr6 21542247 21542394 -160872848 + L3 LINE CR1 1003 1156 -421 328 270 178 26 chr6 21542416 21542568 -160872674 - MIR SINE MIR -53 209 35 423 257 74 40 chr6 21542595 21542743 -160872499 - MIR SINE MIR -18 244 92 211 152 0 0 chr6 21542807 21542840 -160872402 + L3 LINE CR1 1294 1326 -251 21 0 0 0 chr6 21543333 21543354 -160871888 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 21543890 21543911 -160871331 + AT_rich Low_complexity Low_complexity 1 21 0 2070 98 7 20 chr6 21545789 21546094 -160869148 - AluSq SINE Alu -12 301 1 195 317 30 40 chr6 21546536 21546637 -160868605 + L2 LINE L2 2839 2938 -375 517 232 132 96 chr6 21547083 21547355 -160867887 - L2 LINE L2 -1 3312 3031 219 88 0 0 chr6 21547356 21547390 -160867852 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4111 113 14 7 chr6 21547412 21548032 -160867210 - L1PB1 LINE L1 -6 6145 5521 259 292 29 74 chr6 21548127 21548370 -160866872 - L2 LINE L2 -1262 2052 1821 835 176 0 0 chr6 21548410 21548552 -160866690 + FLAM_C SINE Alu 1 142 -1 2539 61 0 3 chr6 21548568 21548878 -160866364 + AluY SINE Alu 1 309 -2 1069 178 18 49 chr6 21548972 21549197 -160866045 - MER20 DNA MER1_type -1 218 1 225 371 64 21 chr6 21550105 21550245 -160864997 - MIR SINE MIR -6 256 111 375 60 0 0 chr6 21551634 21551684 -160863558 + (TG)n Simple_repeat Simple_repeat 1 50 0 358 215 21 55 chr6 21554686 21554812 -160860430 - MIR SINE MIR -70 138 23 2635 42 0 6 chr6 21555521 21555833 -160859409 - AluY SINE Alu -1 310 1 230 225 38 12 chr6 21556089 21556169 -160859073 - L1ME4a LINE L1 -49 6072 5991 244 210 25 37 chr6 21556231 21556312 -160858930 + MER116 DNA Mariner 1 80 0 1715 131 64 14 chr6 21556510 21556819 -160858423 + AluSq SINE Alu 7 313 0 234 0 0 0 chr6 21558320 21558346 -160856896 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1541 147 59 82 chr6 21559950 21560139 -160855103 - AluJb SINE Alu -13 299 118 297 0 0 0 chr6 21560139 21560172 -160855070 + (TA)n Simple_repeat Simple_repeat 1 33 0 1541 147 59 82 chr6 21560172 21560288 -160854954 - AluJb SINE Alu -194 118 1 3633 122 2 28 chr6 21560589 21561129 -160854113 - MER1A DNA MER1_type 0 527 2 188 33 0 33 chr6 21561181 21561211 -160854031 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr6 21561433 21561465 -160853777 + (GA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr6 21562131 21562159 -160853083 + AT_rich Low_complexity Low_complexity 1 28 0 2222 107 3 16 chr6 21563255 21563565 -160851677 - AluSg SINE Alu -4 306 1 21 0 0 0 chr6 21563739 21563760 -160851482 + AT_rich Low_complexity Low_complexity 1 21 0 2417 86 3 0 chr6 21564496 21564799 -160850443 - AluSp SINE Alu -9 304 1 248 248 28 131 chr6 21564919 21565064 -160850178 + MIR SINE MIR 61 190 -72 468 275 84 24 chr6 21565742 21565909 -160849333 + MIR SINE MIR 30 206 -56 207 216 0 0 chr6 21565981 21566018 -160849224 + L2 LINE L2 3219 3255 -17 1605 55 0 0 chr6 21566040 21566242 -160849000 - L1PA5 LINE L1 -2 6152 5951 1794 146 57 0 chr6 21566242 21566522 -160848720 + AluSx SINE Alu 6 301 -11 1751 129 18 11 chr6 21567885 21568213 -160847029 - AluSx SINE Alu 0 330 1 2418 75 0 3 chr6 21568826 21569131 -160846111 - AluSq SINE Alu -9 304 1 593 304 43 32 chr6 21569335 21569588 -160845654 - MIR SINE MIR -1 261 6 2435 76 0 0 chr6 21569785 21570087 -160845155 - AluY SINE Alu -9 302 1 5906 20 6 0 chr6 21570741 21571427 -160843815 - L1PA2 LINE L1 -2 6153 5464 35 24 0 0 chr6 21571975 21572017 -160843225 + AT_rich Low_complexity Low_complexity 1 42 0 393 237 26 13 chr6 21572030 21572182 -160843060 + (TA)n Simple_repeat Simple_repeat 1 154 0 264 273 80 87 chr6 21573448 21573598 -160841644 - L2 LINE L2 -42 3271 3123 22 70 0 0 chr6 21573995 21574038 -160841204 + AT_rich Low_complexity Low_complexity 1 43 0 360 356 164 8 chr6 21574073 21574475 -160840767 - L2 LINE L2 -816 2498 2034 1024 83 0 8 chr6 21574484 21574616 -160840626 + AluSc SINE Alu 1 131 -178 2424 84 7 0 chr6 21574619 21574928 -160840314 + AluSx SINE Alu 1 311 -1 5364 130 32 29 chr6 21575980 21576035 -160839207 + L1MA5 LINE L1 5319 5372 -928 2134 125 30 0 chr6 21576035 21576338 -160838904 + AluSx SINE Alu 1 312 0 5364 130 32 29 chr6 21576338 21577259 -160837983 + L1MA5 LINE L1 5372 6298 -2 1891 112 0 0 chr6 21577273 21577514 -160837728 + AluSx SINE Alu 10 250 -62 284 319 141 15 chr6 21577665 21577800 -160837442 + MIR3 SINE MIR 52 203 -5 882 266 103 88 chr6 21577835 21578261 -160836981 + L2 LINE L2 1636 2075 -1239 791 169 123 60 chr6 21578261 21578563 -160836679 - MER33 DNA MER1_type 0 324 4 882 266 103 88 chr6 21578563 21578718 -160836524 + L2 LINE L2 2075 2226 -1088 713 258 39 82 chr6 21578720 21579247 -160835995 - L2 LINE L2 -2 3311 2538 1041 165 5 24 chr6 21579302 21579508 -160835734 - MER3 DNA MER1_type -6 203 2 679 297 39 66 chr6 21579601 21579931 -160835311 + L2 LINE L2 2316 2636 -678 369 208 195 88 chr6 21579931 21580090 -160835152 - MER5B DNA MER1_type -1 177 2 679 297 39 66 chr6 21580090 21580140 -160835102 + L2 LINE L2 2636 2686 -628 445 264 147 35 chr6 21580281 21580478 -160834764 - MIR SINE MIR -13 249 31 208 0 62 0 chr6 21581420 21581452 -160833790 + (CA)n Simple_repeat Simple_repeat 2 35 0 192 152 0 0 chr6 21582572 21582605 -160832637 + CT-rich Low_complexity Low_complexity 1 33 0 3739 124 24 24 chr6 21582686 21583321 -160831921 - MER41B LTR ERV1 0 635 1 252 217 22 0 chr6 21583692 21583738 -160831504 - MER5A DNA MER1_type 0 189 143 2512 77 0 6 chr6 21584259 21584572 -160830670 - AluY SINE Alu 0 311 1 2346 84 0 3 chr6 21584935 21585271 -160829971 + AluSp SINE Alu 6 340 0 422 206 2 11 chr6 21586604 21586735 -160828507 - L1ME LINE L1 -387 5758 5629 554 235 51 11 chr6 21586874 21587137 -160828105 - L1ME LINE L1 -537 5567 5275 649 296 90 49 chr6 21587162 21588222 -160827020 - L1ME LINE L1 -900 5229 4127 246 222 0 19 chr6 21588223 21588277 -160826965 + CT-rich Low_complexity Low_complexity 2 54 0 455 264 95 90 chr6 21588302 21588420 -160826822 - L1ME LINE L1 -1964 4165 4049 2353 73 7 0 chr6 21588420 21588720 -160826522 + AluSq SINE Alu 1 302 -11 455 264 95 90 chr6 21588720 21588823 -160826419 - L1ME LINE L1 -2080 4049 3948 1595 97 14 5 chr6 21588823 21589040 -160826202 - AluSg/x SINE Alu -19 293 75 455 264 95 90 chr6 21589040 21589185 -160826057 - L1ME LINE L1 -2181 3948 3796 1141 103 31 16 chr6 21589228 21589422 -160825820 - L1MB2 LINE L1 -16 6155 5959 3867 133 23 19 chr6 21589427 21590117 -160825125 + L1MA8 LINE L1 5587 6279 -12 335 236 113 55 chr6 21590596 21590906 -160824336 - L1ME LINE L1 -2665 3464 3137 22 80 0 0 chr6 21591112 21591162 -160824080 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr6 21591203 21591239 -160824003 + AT_rich Low_complexity Low_complexity 1 36 0 225 154 0 0 chr6 21591272 21591311 -160823931 + T-rich Low_complexity Low_complexity 1 39 0 2188 141 0 0 chr6 21591313 21591625 -160823617 - AluSx SINE Alu 0 312 1 257 209 52 26 chr6 21591771 21591886 -160823356 - L1ME LINE L1 -3690 2439 2322 261 240 25 16 chr6 21591939 21592060 -160823182 + (TA)n Simple_repeat Simple_repeat 2 123 0 575 162 0 38 chr6 21592338 21592443 -160822799 - AluJb SINE Alu -78 234 134 738 291 94 46 chr6 21592641 21593685 -160821557 - L1MEd LINE L1 -4746 1564 420 309 109 0 0 chr6 21593936 21593982 -160821260 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr6 21593990 21594015 -160821227 + AT_rich Low_complexity Low_complexity 1 25 0 2489 74 0 0 chr6 21596048 21596359 -160818883 - AluY SINE Alu 0 311 1 1543 135 6 82 chr6 21596406 21596663 -160818579 + LTR57 LTR ERVL 2 228 -183 2144 128 3 0 chr6 21596663 21596967 -160818275 - AluSx SINE Alu -7 305 1 1543 135 6 82 chr6 21596967 21597050 -160818192 + LTR57 LTR ERVL 228 316 -95 2305 81 13 3 chr6 21597093 21597401 -160817841 - AluY SINE Alu 0 311 1 696 283 37 66 chr6 21598676 21598866 -160816376 + L1ME3A LINE L1 5495 5689 -481 2136 142 0 0 chr6 21598866 21599176 -160816066 - AluSx SINE Alu -2 310 1 696 283 37 66 chr6 21599176 21599395 -160815847 + L1ME3A LINE L1 5689 5892 -278 2355 61 0 7 chr6 21599481 21599778 -160815464 - AluY SINE Alu -15 296 2 1725 152 45 0 chr6 21600956 21601246 -160813996 - AluSx SINE Alu -9 303 1 30 0 0 0 chr6 21601395 21601425 -160813817 + AT_rich Low_complexity Low_complexity 1 30 0 2141 135 3 6 chr6 21601694 21602006 -160813236 - AluSx SINE Alu -1 311 1 23 0 0 0 chr6 21602281 21602304 -160812938 + AT_rich Low_complexity Low_complexity 1 23 0 216 162 0 0 chr6 21603533 21603570 -160811672 + (CA)n Simple_repeat Simple_repeat 2 38 0 217 119 0 48 chr6 21605071 21605113 -160810129 + (CAT)n Simple_repeat Simple_repeat 3 42 0 2096 96 4 4 chr6 21605682 21605990 -160809252 - AluSg SINE Alu 0 308 1 258 316 0 0 chr6 21606305 21606384 -160808858 - MIR SINE MIR -1 261 183 530 153 68 59 chr6 21606740 21606858 -160808384 + FLAM_A SINE Alu 1 119 -14 438 65 0 0 chr6 21606858 21606920 -160808322 + (TA)n Simple_repeat Simple_repeat 2 63 0 30 0 0 0 chr6 21608687 21608717 -160806525 + AT_rich Low_complexity Low_complexity 1 30 0 220 329 146 40 chr6 21608884 21609158 -160806084 - L2 LINE L2 -158 3114 2812 248 242 0 15 chr6 21610826 21610892 -160804350 + MER34 LTR ERV1 49 113 -429 * 1131 221 46 47 chr6 21610884 21611322 -160803920 + MER39 LTR ERV1 221 707 0 201 94 0 0 chr6 21611441 21611473 -160803769 + (T)n Simple_repeat Simple_repeat 1 32 0 2121 135 3 0 chr6 21611581 21611870 -160803372 - AluSx SINE Alu -22 290 1 275 290 32 54 chr6 21612160 21612253 -160802989 - MIR SINE MIR -86 176 86 28 0 0 0 chr6 21612288 21612316 -160802926 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr6 21613495 21613534 -160801708 + AT_rich Low_complexity Low_complexity 1 39 0 480 358 17 0 chr6 21613785 21613958 -160801284 + MIR3 SINE MIR 5 180 -28 379 295 89 106 chr6 21614064 21614198 -160801044 + L1MEd LINE L1 3 138 -5981 849 124 73 28 chr6 21614198 21614375 -160800867 - MER53 DNA DNA -2 187 3 379 295 89 106 chr6 21614375 21614721 -160800521 + L1MEd LINE L1 138 475 -5644 306 260 40 30 chr6 21614732 21614832 -160800410 + L1MEd LINE L1 520 620 -5499 1233 161 120 20 chr6 21614848 21615147 -160800095 - MER39 LTR ERV1 0 707 379 287 196 213 53 chr6 21615154 21615311 -160799931 - MER34 LTR ERV1 -410 132 1 377 314 63 61 chr6 21615324 21615687 -160799555 + L1MEd LINE L1 703 1066 -5053 233 281 43 29 chr6 21615706 21615916 -160799326 + L1MEd LINE L1 1183 1395 -4915 351 236 24 16 chr6 21615927 21616050 -160799192 + (TA)n Simple_repeat Simple_repeat 2 125 0 321 259 115 111 chr6 21616061 21616599 -160798643 + L1MEd LINE L1 2280 2823 -3306 1862 158 28 0 chr6 21616599 21616890 -160798352 + AluSx SINE Alu 1 299 -13 321 259 115 111 chr6 21616890 21617018 -160798224 + L1MEd LINE L1 2823 2949 -3180 415 254 112 94 chr6 21617178 21617552 -160797690 + L1MEd LINE L1 3212 3592 -2537 1450 297 62 41 chr6 21617586 21617928 -160797314 + L1MEd LINE L1 3717 4050 -2103 2446 55 3 0 chr6 21617928 21618220 -160797022 - AluY SINE Alu -14 297 5 1450 297 62 41 chr6 21618220 21619219 -160796023 + L1MEd LINE L1 4050 5123 -1030 2086 79 14 7 chr6 21619219 21619517 -160795725 + AluY SINE Alu 1 300 0 1450 297 62 41 chr6 21619517 21620309 -160794933 + L1MEd LINE L1 5123 5897 -256 235 333 117 17 chr6 21620944 21621064 -160794178 + MIR SINE MIR 1 132 -130 24 53 0 0 chr6 21621455 21621493 -160793749 + AT_rich Low_complexity Low_complexity 1 38 0 2300 98 0 10 chr6 21621810 21622115 -160793127 + AluSg SINE Alu 1 302 -8 1945 251 57 41 chr6 21622693 21623209 -160792033 - HsTC2a DNA Tc2 -1183 717 186 2661 52 0 0 chr6 21623209 21623518 -160791724 + AluY SINE Alu 1 309 -2 1945 251 57 41 chr6 21623518 21623707 -160791535 - HsTC2a DNA Tc2 -1714 186 1 2251 102 3 0 chr6 21624308 21624601 -160790641 - AluSq SINE Alu -19 294 1 251 204 126 48 chr6 21624644 21624747 -160790495 + MIR SINE MIR 151 261 -1 213 305 148 8 chr6 21625173 21625301 -160789941 - MIR3 SINE MIR -62 146 1 2456 68 0 34 chr6 21625333 21625654 -160789588 - AluY SINE Alu -1 310 1 2186 129 132 5 chr6 21626010 21626390 -160788852 + MSTA LTR MaLR 1 428 0 472 280 187 16 chr6 21626416 21626909 -160788333 - L1ME4a LINE L1 -269 5852 5276 21 89 0 0 chr6 21627638 21627694 -160787548 + AT_rich Low_complexity Low_complexity 1 56 0 631 345 29 5 chr6 21627851 21628057 -160787185 + LTR16B LTR ERVL 15 225 -239 485 265 30 24 chr6 21628098 21628264 -160786978 + LTR16B LTR ERVL 294 460 -4 21 0 0 0 chr6 21629965 21629986 -160785256 + AT_rich Low_complexity Low_complexity 1 21 0 2236 121 3 0 chr6 21630183 21630489 -160784753 - AluSp SINE Alu -6 307 1 660 115 39 19 chr6 21630952 21631056 -160784186 + U6 snRNA snRNA 1 106 -1 266 275 122 38 chr6 21631233 21631364 -160783878 - MIR SINE MIR -36 226 85 186 313 94 16 chr6 21631490 21631554 -160783688 + MIR3 SINE MIR 15 83 -125 23 33 0 0 chr6 21631740 21631770 -160783472 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr6 21631817 21631853 -160783389 + AT_rich Low_complexity Low_complexity 1 36 0 261 363 180 11 chr6 21631946 21632224 -160783018 + L3 LINE CR1 60 384 -1193 205 224 45 30 chr6 21632368 21632435 -160782807 - MER5A DNA MER1_type -85 104 37 433 279 211 0 chr6 21632657 21632861 -160782381 + MIR SINE MIR 16 262 0 550 352 86 40 chr6 21632916 21633725 -160781517 - L2 LINE L2 -84 3188 2329 243 0 0 0 chr6 21633725 21633752 -160781490 + (TG)n Simple_repeat Simple_repeat 2 28 0 550 352 86 40 chr6 21633752 21633857 -160781385 - L2 LINE L2 -943 2329 2230 253 333 61 23 chr6 21633876 21634008 -160781234 - MLT1J LTR MaLR -2 509 373 433 264 149 11 chr6 21634110 21634284 -160780958 - MLT1J LTR MaLR -269 242 45 2931 53 35 0 chr6 21634870 21635246 -160779996 + L1PA7 LINE L1 5749 6137 -17 1050 151 0 6 chr6 21636374 21636553 -160778689 + CT-rich Low_complexity Low_complexity 3 180 0 258 282 45 27 chr6 21636690 21636800 -160778442 - L1M4 LINE L1 -1175 4971 4860 1595 223 113 34 chr6 21636848 21637693 -160777549 - L1MC/D LINE L1 -751 5378 4679 695 224 6 6 chr6 21637703 21637877 -160777365 - L1MC/D LINE L1 -1534 4595 4422 643 307 74 19 chr6 21638524 21639144 -160776098 - L1MEd LINE L1 -4682 1628 946 648 154 7 47 chr6 21639155 21639304 -160775938 - L1MB8 LINE L1 -303 5875 5733 459 260 110 122 chr6 21639319 21639756 -160775486 - L1MEd LINE L1 -5168 951 510 2045 133 7 7 chr6 21639756 21640058 -160775184 - AluSx SINE Alu -10 302 1 459 260 110 122 chr6 21640058 21640544 -160774698 - L1MEd LINE L1 -5609 510 39 12697 199 40 36 chr6 21641047 21641150 -160774092 - L1MA4A LINE L1 -23 6982 6881 2392 58 0 10 chr6 21641150 21641443 -160773799 - AluY SINE Alu -19 292 3 12697 199 40 36 chr6 21641443 21642293 -160772949 - L1MA4A LINE L1 -124 6881 6035 25314 42 3 0 chr6 21642293 21646181 -160769061 - L1PA5 LINE L1 -8 6146 2212 12697 199 40 36 chr6 21646181 21647802 -160767440 - L1MA4A LINE L1 -970 6035 4421 2295 113 0 0 chr6 21647802 21648111 -160767131 + AluSg SINE Alu 2 310 0 12697 199 40 36 chr6 21648111 21650445 -160764797 - L1MA4A LINE L1 -2584 4421 2012 722 112 0 0 chr6 21650445 21650552 -160764690 - L1PA11 LINE L1 -1 6173 6067 12697 199 40 36 chr6 21650552 21652562 -160762680 - L1MA4A LINE L1 -4993 2012 10 477 84 0 0 chr6 21652617 21652688 -160762554 + (TA)n Simple_repeat Simple_repeat 2 72 0 499 360 75 0 chr6 21655254 21655440 -160759802 + MIR SINE MIR 47 246 -16 187 318 0 30 chr6 21656894 21656960 -160758282 + MIR3 SINE MIR 107 170 -38 2103 188 21 0 chr6 21658095 21658467 -160756775 + MLT2D LTR ERVL 4 383 -31 962 89 0 0 chr6 21658515 21658638 -160756604 - AluSg/x SINE Alu -25 287 165 2153 99 41 0 chr6 21659592 21659886 -160755356 + AluSx SINE Alu 1 306 -6 918 156 20 0 chr6 21659925 21660169 -160755073 + CT-rich Low_complexity Low_complexity 1 249 0 1705 173 23 16 chr6 21660170 21660476 -160754766 - AluJb SINE Alu -4 308 1 463 107 13 13 chr6 21660817 21660892 -160754350 + MSTB2 LTR MaLR 15 89 -368 2198 179 30 15 chr6 21660892 21661295 -160753947 + MSTB2 LTR MaLR 49 457 0 1817 190 84 13 chr6 21661707 21662170 -160753072 - LTR54B LTR ERV1 -2 496 1 640 285 90 42 chr6 21662604 21663087 -160752155 + MLT1G1 LTR MaLR 1 532 -23 247 269 154 0 chr6 21663244 21663322 -160751920 - L2 LINE L2 -12 3301 3212 336 376 91 12 chr6 21663398 21663563 -160751679 - L2 LINE L2 -5 3267 3090 1949 233 33 64 chr6 21663669 21664318 -160750924 + MLT1G LTR MaLR 3 590 0 1754 152 4 4 chr6 21665667 21665936 -160749306 - AluJo SINE Alu -30 282 14 266 253 27 0 chr6 21667684 21667759 -160747483 + MLT1L LTR MaLR 197 273 -342 2470 55 0 0 chr6 21668200 21668490 -160746752 + AluY SINE Alu 1 290 -21 399 279 23 0 chr6 21668498 21668584 -160746658 + FLAM_A SINE Alu 2 89 -44 234 281 123 19 chr6 21668793 21669053 -160746189 + L1M4 LINE L1 3689 3975 -2171 2219 102 0 0 chr6 21669132 21669460 -160745782 + AluSp SINE Alu 1 328 0 292 350 82 22 chr6 21669461 21669644 -160745598 + MIR SINE MIR 28 221 -41 21 0 0 0 chr6 21670795 21670816 -160744426 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr6 21670879 21670905 -160744337 + AT_rich Low_complexity Low_complexity 1 26 0 207 257 157 14 chr6 21671443 21671513 -160743729 - MIR3 SINE MIR -37 171 92 21 36 0 0 chr6 21671962 21671990 -160743252 + AT_rich Low_complexity Low_complexity 1 28 0 205 331 69 48 chr6 21672796 21672941 -160742301 + L2 LINE L2 3165 3312 -1 374 324 82 12 chr6 21673072 21673242 -160742000 + MIR SINE MIR 20 201 -61 222 171 0 0 chr6 21673301 21673336 -160741906 + L2 LINE L2 3222 3256 -16 23 0 0 0 chr6 21673567 21673590 -160741652 + AT_rich Low_complexity Low_complexity 1 23 0 1975 130 0 4 chr6 21674144 21674420 -160740822 + AluSx SINE Alu 1 275 -37 247 221 15 0 chr6 21674436 21674504 -160740738 + (TA)n Simple_repeat Simple_repeat 2 70 0 1721 109 121 8 chr6 21675016 21675305 -160739937 - AluSq SINE Alu 0 318 1 714 200 82 46 chr6 21676315 21676487 -160738755 + MER3 DNA MER1_type 3 184 -25 1731 169 91 0 chr6 21676487 21676818 -160738424 - MER46B DNA MER2_type 0 236 1 714 200 82 46 chr6 21676818 21676840 -160738402 + MER3 DNA MER1_type 184 204 -5 536 158 20 0 chr6 21677273 21677374 -160737868 + L1PA11 LINE L1 6067 6169 -5 782 197 0 0 chr6 21678159 21678291 -160736951 - FLAM_A SINE Alu -1 132 1 2485 205 44 32 chr6 21679265 21679884 -160735358 - MLT1E2 LTR MaLR 0 626 1 276 154 0 0 chr6 21679998 21680050 -160735192 + CT-rich Low_complexity Low_complexity 1 52 0 4934 23 0 0 chr6 21680242 21680816 -160734426 + L1PA3 LINE L1 5582 6155 0 1929 85 0 8 chr6 21681049 21681297 -160733945 + AluSc SINE Alu 34 279 -30 449 262 68 128 chr6 21681400 21681678 -160733564 - L1MEd LINE L1 -2644 3485 3192 1857 151 0 0 chr6 21681678 21681957 -160733285 - AluSx SINE Alu -4 308 30 449 262 68 128 chr6 21681957 21682068 -160733174 - L1MEd LINE L1 -2937 3192 3076 4540 71 3 0 chr6 21682068 21682662 -160732580 - L1PA7 LINE L1 -1 6153 5558 449 262 68 128 chr6 21682662 21683024 -160732218 - L1MEd LINE L1 -3053 3076 2767 517 294 72 43 chr6 21683369 21683858 -160731384 - L1MEd LINE L1 -902 1588 987 1528 311 46 52 chr6 21683866 21685281 -160729961 - L1M4 LINE L1 -1231 4915 3509 1191 243 137 44 chr6 21685476 21685898 -160729344 + MLT2B1 LTR ERVL 1 469 -51 15604 141 41 14 chr6 21685898 21688540 -160726702 - Tigger2 DNA MER2_type -1 2717 3 1191 243 137 44 chr6 21688540 21688569 -160726673 + MLT2B1 LTR ERVL 469 494 -26 258 192 0 0 chr6 21688569 21688621 -160726621 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 287 105 0 35 chr6 21688622 21688679 -160726563 + MLT2B1 LTR ERVL 464 518 -2 1118 176 126 50 chr6 21688681 21688959 -160726283 + MLT1A2-int LTR MaLR 1 299 -1072 2289 169 20 60 chr6 21689083 21689581 -160725661 + MER66B LTR ERV1 9 486 0 1520 213 33 96 chr6 21689584 21689865 -160725377 + MLT1A2-int LTR MaLR 1314 1558 -177 7435 41 2 0 chr6 21689865 21691196 -160724046 - L1PA5 LINE L1 0 6154 4825 1520 213 33 96 chr6 21691196 21691364 -160723878 + MLT1A2-int LTR MaLR 1558 1735 0 1017 218 53 84 chr6 21691364 21691744 -160723498 + MLT1A2 LTR MaLR 1 368 -6 654 276 74 47 chr6 21692280 21692795 -160722447 - L1MEd LINE L1 -4863 1256 728 21 57 0 0 chr6 21693661 21693696 -160721546 + AT_rich Low_complexity Low_complexity 1 35 0 305 322 0 49 chr6 21693702 21693845 -160721397 - L2 LINE L2 0 3313 3178 247 245 0 0 chr6 21693839 21693888 -160721354 - MIR SINE MIR 0 262 214 * 302 0 0 26 chr6 21694274 21694313 -160720929 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr6 21695946 21695967 -160719275 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 822 254 12 0 chr6 21697352 21697525 -160717717 + MER5A DNA MER1_type 9 183 -6 223 321 116 9 chr6 21698397 21698509 -160716733 + MIR3 SINE MIR 4 127 -81 635 293 72 31 chr6 21698526 21698844 -160716398 + L2 LINE L2 2970 3300 -13 255 61 0 0 chr6 21698844 21698877 -160716365 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 245 356 0 19 chr6 21698883 21698987 -160716255 + MIR SINE MIR 19 120 -142 387 320 39 19 chr6 21699367 21699523 -160715719 + MIR3 SINE MIR 39 197 -11 249 33 0 0 chr6 21702013 21702043 -160713199 + (CA)n Simple_repeat Simple_repeat 2 31 0 256 322 78 0 chr6 21702348 21702438 -160712804 - L2 LINE L2 -3 3269 3173 24 32 0 0 chr6 21702502 21702533 -160712709 + AT_rich Low_complexity Low_complexity 1 31 0 209 326 35 12 chr6 21702579 21702665 -160712577 - MIR SINE MIR -90 118 31 2393 85 31 8 chr6 21702801 21703154 -160712088 + L1P4 LINE L1 5272 5632 -536 254 176 39 0 chr6 21703234 21703285 -160711957 + MER21B LTR ERV1 614 666 -197 477 0 0 0 chr6 21703288 21703341 -160711901 + (AATTG)n Simple_repeat Simple_repeat 1 53 0 193 317 77 44 chr6 21703607 21703790 -160711452 - L2 LINE L2 -1378 1936 1748 1253 201 179 128 chr6 21703856 21704309 -160710933 + MLT2B3 LTR ERVL 1 524 -30 326 337 0 0 chr6 21704338 21704433 -160710809 - L1MC4 LINE L1 -1334 6708 6614 * 339 272 0 22 chr6 21704355 21704447 -160710795 + L1MC4 LINE L1 6614 6703 -1339 257 150 0 67 chr6 21704483 21704529 -160710713 + MLT2B1 LTR ERVL 465 508 -12 1788 137 68 44 chr6 21704529 21704895 -160710347 - THE1C LTR MaLR 0 375 1 257 150 0 67 chr6 21704895 21704908 -160710334 + MLT2B1 LTR ERVL 508 520 0 337 331 135 0 chr6 21705119 21705252 -160709990 - MIR3 SINE MIR -23 185 35 202 343 70 47 chr6 21705345 21705517 -160709725 + L2 LINE L2 2912 3087 -185 2275 114 0 7 chr6 21706014 21706321 -160708921 - AluSx SINE Alu -7 305 1 1617 183 17 3 chr6 21707042 21707331 -160707911 - AluJo SINE Alu -13 299 7 21 0 0 0 chr6 21708024 21708045 -160707197 + AT_rich Low_complexity Low_complexity 1 21 0 329 359 32 19 chr6 21709143 21709299 -160705943 - MIR3 SINE MIR -14 194 37 2416 44 17 10 chr6 21709603 21709899 -160705343 - AluY SINE Alu -13 298 1 252 402 49 49 chr6 21710496 21710742 -160704500 + L2 LINE L2 3027 3272 0 2330 99 3 0 chr6 21710930 21711234 -160704008 - AluSx SINE Alu -7 305 1 233 220 0 0 chr6 21712421 21712471 -160702771 + (ATG)n Simple_repeat Simple_repeat 1 50 0 184 354 31 21 chr6 21712543 21712639 -160702603 - MIR SINE MIR -161 101 5 425 104 0 30 chr6 21712784 21712851 -160702391 - AluSx SINE Alu -12 298 234 1334 117 0 0 chr6 21712851 21713030 -160702212 - AluSx SINE Alu -133 179 1 323 221 142 31 chr6 21713462 21713589 -160701653 - MLT1H LTR MaLR 0 549 409 227 184 0 0 chr6 21715292 21715341 -160699901 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 238 317 71 107 chr6 21716885 21717166 -160698076 - L2 LINE L2 -39 3233 2963 576 186 6 3 chr6 21717225 21717388 -160697854 - MER3 DNA MER1_type -1 208 2 260 311 131 18 chr6 21717388 21717610 -160697632 - L2 LINE L2 -1035 2279 2033 279 0 0 0 chr6 21717745 21717776 -160697466 + (TG)n Simple_repeat Simple_repeat 2 32 0 665 222 125 6 chr6 21717863 21718039 -160697203 + MLT1D LTR MaLR 309 505 0 250 279 0 67 chr6 21718097 21718201 -160697041 - MER102b DNA MER1_type -9 332 236 200 309 22 81 chr6 21718937 21719160 -160696082 + L2 LINE L2 2288 2497 -817 590 250 49 12 chr6 21719245 21719409 -160695833 + MIR SINE MIR 13 182 -80 2136 89 7 0 chr6 21719667 21719947 -160695295 - AluSp SINE Alu -19 294 13 21 0 0 0 chr6 21721244 21721265 -160693977 + AT_rich Low_complexity Low_complexity 1 21 0 2526 87 119 5 chr6 21721969 21722371 -160692871 - LTR7 LTR ERV1 -2 448 1 2196 106 48 13 chr6 21722371 21722748 -160692494 - HERVH LTR ERV1 0 7713 7324 1331 121 23 0 chr6 21722748 21722963 -160692279 - HERVH LTR ERV1 -1894 5819 5600 4020 145 3 3 chr6 21722964 21723626 -160691616 - HERVH LTR ERV1 -2564 5149 4488 6034 74 1 2 chr6 21723628 21724483 -160690759 - HERVH LTR ERV1 -3720 3993 3140 * 15295 92 14 16 chr6 21724480 21727321 -160687921 - HERVH LTR ERV1 -4729 2984 25 205 310 52 60 chr6 21728904 21729020 -160686222 + MIR3 SINE MIR 3 117 -91 233 224 0 0 chr6 21729880 21729929 -160685313 - L2 LINE L2 -3 3310 3262 2333 92 0 3 chr6 21730186 21730481 -160684761 - AluSq SINE Alu -19 294 1 2110 92 11 4 chr6 21730689 21730962 -160684280 - AluSq SINE Alu -16 297 23 305 267 38 30 chr6 21731592 21731723 -160683519 - MER94 DNA DNA -2 132 1 1658 165 73 12 chr6 21733207 21733547 -160681695 - MER46B DNA MER2_type 0 236 1 2329 106 3 0 chr6 21733716 21734018 -160681224 - AluSg SINE Alu -7 303 1 266 308 110 14 chr6 21734178 21734324 -160680918 + L3b LINE CR1 1217 1376 -207 21 0 0 0 chr6 21734724 21734745 -160680497 + AT_rich Low_complexity Low_complexity 1 21 0 3011 139 24 71 chr6 21734833 21735414 -160679828 - MLT2B3 LTR ERVL 0 554 1 213 39 0 0 chr6 21735440 21735466 -160679776 + (TG)n Simple_repeat Simple_repeat 1 26 0 484 249 107 3 chr6 21735914 21736054 -160679188 - MIR3 SINE MIR 0 208 59 204 299 37 28 chr6 21736129 21736236 -160679006 - MIR SINE MIR -92 170 63 189 0 0 0 chr6 21737117 21737138 -160678104 + (CA)n Simple_repeat Simple_repeat 2 22 0 318 182 68 11 chr6 21737253 21737341 -160677901 - MER94 DNA DNA -41 93 1 410 163 0 0 chr6 21737830 21737910 -160677332 - L1MB3 LINE L1 -2 6181 6102 2137 102 7 0 chr6 21737922 21738232 -160677010 + AluSx SINE Alu 1 312 0 183 355 128 28 chr6 21738236 21738377 -160676865 + L2 LINE L2 3117 3271 -1 2064 142 3 0 chr6 21738443 21738738 -160676504 - AluSx SINE Alu -16 296 1 373 310 133 19 chr6 21739056 21739214 -160676028 + MIR SINE MIR 29 204 -58 5892 99 17 3 chr6 21739270 21739332 -160675910 + L1PB1 LINE L1 4978 5038 -1113 2217 102 3 0 chr6 21739332 21739625 -160675617 + AluSg SINE Alu 6 299 -11 5892 99 17 3 chr6 21739625 21740376 -160674866 + L1PB1 LINE L1 5038 5807 -344 317 62 21 0 chr6 21740376 21740424 -160674818 + (TA)n Simple_repeat Simple_repeat 2 50 0 5892 99 17 3 chr6 21740424 21740766 -160674476 + L1PB1 LINE L1 5807 6143 -8 1039 243 18 5 chr6 21742128 21742346 -160672896 - MER58A DNA MER1_type -3 221 1 1274 198 124 21 chr6 21743529 21743868 -160671374 - MLT1A2 LTR MaLR 0 374 1 26 0 0 0 chr6 21744218 21744244 -160670998 + AT_rich Low_complexity Low_complexity 1 26 0 2134 117 0 0 chr6 21744275 21744584 -160670658 - AluSx SINE Alu 0 309 1 21 36 0 0 chr6 21744621 21744649 -160670593 + AT_rich Low_complexity Low_complexity 1 28 0 346 347 133 28 chr6 21746874 21747396 -160667846 - L2 LINE L2 0 3313 2724 47 53 0 0 chr6 21747866 21747941 -160667301 + AT_rich Low_complexity Low_complexity 1 75 0 221 377 66 0 chr6 21748258 21748380 -160666862 - MIR3 SINE MIR -36 172 43 2738 117 8 0 chr6 21749015 21749416 -160665826 - MER1A DNA MER1_type 0 529 126 1936 148 96 0 chr6 21749416 21749748 -160665494 - THE1B LTR MaLR 0 364 1 10535 101 10 61 chr6 21749748 21751413 -160663829 - THE1B-int LTR MaLR 0 1580 1 1709 130 28 1 chr6 21751413 21751732 -160663510 - THE1B LTR MaLR 0 364 3 818 154 0 0 chr6 21751734 21751864 -160663378 - MER1A DNA MER1_type -397 130 1 476 179 41 123 chr6 21751955 21752150 -160663092 - MER58A DNA MER1_type 0 224 46 2133 262 76 13 chr6 21752168 21752565 -160662677 + L1MB2 LINE L1 1161 1532 -4850 222 37 0 0 chr6 21752565 21752592 -160662650 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 2133 262 76 13 chr6 21752592 21753261 -160661981 + L1MB2 LINE L1 1532 2377 -4005 1085 196 13 0 chr6 21753262 21753491 -160661751 - Tigger2 DNA MER2_type -1 2717 2486 1028 215 0 0 chr6 21753492 21753711 -160661531 + L1 LINE L1 4096 4314 -1832 424 107 12 60 chr6 21753725 21753809 -160661433 + L1P LINE L1 4697 4776 -1370 389 237 0 42 chr6 21753915 21754033 -160661209 + L1 LINE L1 4777 4889 -1257 1268 127 9 9 chr6 21754137 21754358 -160660884 - Tigger2 DNA MER2_type -225 2493 2273 385 178 0 14 chr6 21754345 21754418 -160660824 - Tigger2 DNA MER2_type -2646 72 1 * 359 132 51 139 chr6 21754418 21754576 -160660666 + L1MB2 LINE L1 2378 2532 -3850 910 205 100 0 chr6 21754584 21754774 -160660468 - Tigger7 DNA MER2_type -496 209 1 1045 255 10 7 chr6 21754774 21755076 -160660166 + L1MB2 LINE L1 2860 3162 -3220 11264 204 16 22 chr6 21755084 21758169 -160657073 + L1PA13 LINE L1 1105 4169 -2628 186 43 0 0 chr6 21758169 21758192 -160657050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 11264 204 16 22 chr6 21758192 21758678 -160656564 + L1PA13 LINE L1 4169 4656 -2141 2893 78 4 13 chr6 21758679 21759094 -160656148 + MLT2A1 LTR ERVL 1 480 -40 192 200 0 0 chr6 21759094 21759134 -160656108 + (CA)n Simple_repeat Simple_repeat 2 41 0 235 100 25 0 chr6 21759134 21759174 -160656068 + MLT2A1 LTR ERVL 397 437 -7 6700 192 27 6 chr6 21759174 21759244 -160655998 + L1PA13 LINE L1 4646 4713 -2101 1693 104 0 0 chr6 21759244 21759465 -160655777 + AluY SINE Alu 66 286 -25 6700 192 27 6 chr6 21759465 21761533 -160653709 + L1PA13 LINE L1 4713 6814 0 6404 226 65 24 chr6 21761535 21762803 -160652439 + L1MB2 LINE L1 3164 4552 -1830 321 26 0 0 chr6 21762803 21762841 -160652401 + (CA)n Simple_repeat Simple_repeat 2 39 0 6404 226 65 24 chr6 21762841 21763632 -160651610 + L1MB2 LINE L1 4552 5309 -1073 3237 198 59 36 chr6 21763652 21764588 -160650654 + L1MB2 LINE L1 5434 6389 -18 1323 69 0 0 chr6 21765391 21765566 -160649676 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2147 104 0 0 chr6 21765567 21765845 -160649397 - AluY SINE Alu -33 278 1 34 42 0 0 chr6 21765895 21765943 -160649299 + AT_rich Low_complexity Low_complexity 1 48 0 225 311 143 8 chr6 21766699 21766818 -160648424 - L2 LINE L2 -1 3271 3137 476 308 110 9 chr6 21767885 21768112 -160647130 + MIR SINE MIR 12 261 -1 240 35 0 0 chr6 21768810 21768839 -160646403 + (ATG)n Simple_repeat Simple_repeat 1 29 0 180 375 31 10 chr6 21769094 21769190 -160646052 - L2 LINE L2 -160 3112 3015 315 71 0 0 chr6 21769406 21769448 -160645794 + (CA)n Simple_repeat Simple_repeat 2 43 0 1536 184 223 39 chr6 21769453 21769910 -160645332 + MLT1F LTR MaLR 2 542 0 1737 180 7 10 chr6 21770151 21770440 -160644802 - AluJo SINE Alu -15 297 10 3666 143 87 39 chr6 21770440 21771109 -160644133 + LTR12 LTR ERV1 3 703 -11 2328 91 33 0 chr6 21771110 21771448 -160643794 + LTR12 LTR ERV1 383 714 0 430 297 67 67 chr6 21772879 21773384 -160641858 + L2 LINE L2 2809 3313 0 26 30 0 0 chr6 21773385 21773418 -160641824 + AT_rich Low_complexity Low_complexity 1 33 0 469 183 70 9 chr6 21773539 21773654 -160641588 + MIR SINE MIR 79 200 -62 2661 68 0 0 chr6 21773861 21774171 -160641071 - AluSg SINE Alu 0 310 1 368 235 101 13 chr6 21774411 21774560 -160640682 + L1ME3A LINE L1 5913 6074 -96 207 69 0 0 chr6 21774627 21774656 -160640586 + (CA)n Simple_repeat Simple_repeat 1 29 0 234 0 0 0 chr6 21774861 21774887 -160640355 + (TC)n Simple_repeat Simple_repeat 2 27 0 226 200 30 80 chr6 21775583 21775683 -160639559 + L2 LINE L2 2564 2658 -656 243 311 17 25 chr6 21776007 21776126 -160639116 + L2 LINE L2 3155 3272 0 263 238 70 98 chr6 21776130 21776273 -160638969 - MIR3 SINE MIR -50 158 20 181 233 47 35 chr6 21776292 21776378 -160638864 - L3b LINE CR1 -351 1232 1146 3633 170 32 17 chr6 21776721 21777444 -160637798 - L1MB4 LINE L1 -1 6179 5446 906 194 184 43 chr6 21778490 21778927 -160636315 + MLT1E1 LTR MaLR 1 580 -74 1982 109 18 0 chr6 21779000 21779276 -160635966 - AluSp SINE Alu -1 312 32 4278 138 98 75 chr6 21779277 21780268 -160634974 + pTR5 LTR ERV1 7 443 -271 187 53 26 26 chr6 21780268 21780306 -160634936 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4278 138 98 75 chr6 21780306 21780559 -160634683 + pTR5 LTR ERV1 443 689 -25 381 22 0 0 chr6 21781356 21781402 -160633840 + (TG)n Simple_repeat Simple_repeat 2 47 0 463 188 27 89 chr6 21782050 21782162 -160633080 + MLT1C LTR MaLR 1 105 -362 416 143 0 0 chr6 21782153 21782216 -160633026 + MLT1C LTR MaLR 290 352 -115 * 1756 154 3 42 chr6 21782218 21782530 -160632712 + MLT1B LTR MaLR 91 390 0 349 247 160 40 chr6 21783009 21783159 -160632083 - MER5A DNA MER1_type -9 180 13 294 277 45 23 chr6 21784033 21784171 -160631071 - MIR3 SINE MIR -22 186 45 238 262 47 84 chr6 21784353 21784460 -160630782 + MER5B DNA MER1_type 2 104 -74 * 321 183 28 4 chr6 21784459 21784569 -160630673 + MER5A DNA MER1_type 35 189 0 196 346 13 13 chr6 21784591 21784669 -160630573 + MER5B DNA MER1_type 56 133 -45 1479 249 25 6 chr6 21784989 21785347 -160629895 + MLT1A1 LTR MaLR 1 365 0 404 291 122 5 chr6 21785377 21785573 -160629669 + MIR SINE MIR 29 247 -15 22 0 0 0 chr6 21785786 21785808 -160629434 + AT_rich Low_complexity Low_complexity 1 22 0 2336 71 0 0 chr6 21786790 21787105 -160628137 + AluY SINE Alu 1 315 0 701 271 21 5 chr6 21787613 21787805 -160627437 - MIR SINE MIR -15 247 53 527 252 91 24 chr6 21788031 21788241 -160627001 - MLT1G1 LTR MaLR -269 326 103 306 0 0 0 chr6 21788244 21788278 -160626964 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 191 326 14 64 chr6 21788278 21788419 -160626823 - L2 LINE L2 -428 2886 2753 186 350 88 10 chr6 21790156 21790350 -160624892 - L2 LINE L2 -482 2832 2624 4842 112 0 0 chr6 21790363 21791040 -160624202 - L1PA13 LINE L1 -39 6124 5448 2404 280 24 25 chr6 21791263 21791938 -160623304 - MER115 DNA AcHobo -17 676 3 195 139 0 0 chr6 21791971 21792007 -160623235 + (A)n Simple_repeat Simple_repeat 1 36 0 258 312 118 0 chr6 21792835 21792928 -160622314 - MIR SINE MIR -110 152 49 214 282 209 9 chr6 21794738 21794848 -160620394 + MIR SINE MIR 87 218 -44 1342 183 48 41 chr6 21795072 21795362 -160619880 + AluJo SINE Alu 1 292 -20 894 144 63 0 chr6 21795895 21796069 -160619173 - L1MA7 LINE L1 -3 6288 6104 2357 117 10 0 chr6 21796610 21796919 -160618323 - AluSx SINE Alu 0 312 1 2273 103 0 17 chr6 21799232 21799533 -160615709 + AluSq SINE Alu 1 296 -17 221 57 29 0 chr6 21799608 21799643 -160615599 + (CA)n Simple_repeat Simple_repeat 1 36 0 249 33 0 0 chr6 21800158 21800188 -160615054 + (GA)n Simple_repeat Simple_repeat 1 30 0 2388 107 0 0 chr6 21800504 21800812 -160614430 + AluSx SINE Alu 1 308 -4 1495 197 13 30 chr6 21801535 21801840 -160613402 + AluJo SINE Alu 1 300 -12 252 0 0 0 chr6 21802399 21802427 -160612815 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr6 21802426 21802452 -160612790 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 897 149 0 8 chr6 21802572 21802728 -160612514 + AluJb SINE Alu 155 309 0 2409 100 0 0 chr6 21804981 21805291 -160609951 + AluSx SINE Alu 1 310 -2 1454 159 0 33 chr6 21856353 21856598 -160558644 - AluJo SINE Alu -75 237 1 987 219 9 19 chr6 21856647 21856857 -160558385 + MER3 DNA MER1_type 2 209 0 2193 109 26 7 chr6 21856974 21857277 -160557965 - AluSx SINE Alu -3 309 1 199 376 86 0 chr6 21857659 21857776 -160557466 - L2 LINE L2 -464 2850 2724 3085 163 42 11 chr6 21857814 21858040 -160557202 + L1MB3 LINE L1 5609 5827 -356 1978 103 88 0 chr6 21858040 21858312 -160556930 + AluSp SINE Alu 1 296 -17 3085 163 42 11 chr6 21858312 21858639 -160556603 + L1MB3 LINE L1 5827 6179 -4 1343 273 147 10 chr6 21858653 21858679 -160556563 + L2 LINE L2 2565 2586 -727 2444 89 0 6 chr6 21858679 21858993 -160556249 - AluSq SINE Alu -1 312 1 1343 273 147 10 chr6 21858993 21859415 -160555827 + L2 LINE L2 2586 2949 -364 864 19 19 28 chr6 21859415 21859543 -160555699 + L1PA3 LINE L1 6048 6155 0 1343 273 147 10 chr6 21859543 21859745 -160555497 + L2 LINE L2 2949 3313 0 516 232 151 27 chr6 21859913 21860098 -160555144 - L2 LINE L2 -887 2427 2220 44 46 0 0 chr6 21860314 21860379 -160554863 + AT_rich Low_complexity Low_complexity 1 65 0 263 254 0 0 chr6 21860503 21860566 -160554676 - MIR3 SINE MIR -41 167 105 2153 116 3 52 chr6 21860681 21860904 -160554338 + L1PB4 LINE L1 5585 5785 -371 351 0 0 0 chr6 21860904 21860943 -160554299 + (CA)n Simple_repeat Simple_repeat 1 39 0 2153 116 3 52 chr6 21860943 21861081 -160554161 + L1PB4 LINE L1 5785 5928 -228 * 2252 110 27 9 chr6 21861068 21861405 -160553837 + L1PA16 LINE L1 5686 6028 -138 24 67 0 0 chr6 21861413 21861458 -160553784 + AT_rich Low_complexity Low_complexity 1 45 0 436 158 89 0 chr6 21861466 21861567 -160553675 + L1MDa LINE L1 1631 1740 -4800 1479 165 28 0 chr6 21861644 21861892 -160553350 + L1PB4 LINE L1 5892 6146 -10 271 307 156 34 chr6 21862470 21862649 -160552593 + MLT1J LTR MaLR 115 315 -196 281 218 126 0 chr6 21862701 21862788 -160552454 + MLT1L LTR MaLR 501 598 -17 1652 155 15 0 chr6 21862967 21863231 -160552011 - AluJb SINE Alu -44 268 1 984 193 19 0 chr6 21866359 21866520 -160548722 + FAM SINE Alu 1 164 -11 432 256 56 41 chr6 21866552 21866697 -160548545 + MIR SINE MIR 1 155 -53 2068 93 90 0 chr6 21866697 21866976 -160548266 - AluSg SINE Alu -6 304 1 432 256 56 41 chr6 21866976 21866995 -160548247 + MIR SINE MIR 155 172 -36 278 260 144 0 chr6 21867025 21867129 -160548113 + MIR SINE MIR 4 122 -140 742 218 0 0 chr6 21867215 21867339 -160547903 - FLAM_A SINE Alu -9 124 1 1268 197 0 0 chr6 21867344 21867552 -160547690 - MER58A DNA MER1_type -16 208 1 210 158 0 0 chr6 21867786 21867824 -160547418 + A-rich Low_complexity Low_complexity 1 38 0 462 246 36 98 chr6 21868347 21868571 -160546671 + MLT1J LTR MaLR 299 508 -3 808 266 112 16 chr6 21868581 21868623 -160546619 - HsTC2c DNA Tc2 -1170 728 691 1792 52 4 0 chr6 21868623 21868853 -160546389 - L1PA4 LINE L1 -3 6152 5922 808 266 112 16 chr6 21868853 21869122 -160546120 - HsTC2c DNA Tc2 -1207 691 387 340 231 0 15 chr6 21869134 21869199 -160546043 + MER91A DNA MER1_type 28 91 -105 4384 159 72 39 chr6 21869516 21870827 -160544415 + pTR5 LTR ERV1 734 2438 0 5411 171 239 32 chr6 21870837 21872242 -160543000 + pTR5 LTR ERV1 743 2438 0 1824 161 3 7 chr6 21872371 21872669 -160542573 + AluSx SINE Alu 1 297 -15 1648 125 4 36 chr6 21873301 21873549 -160541693 + AluSc SINE Alu 46 285 -24 1381 169 103 63 chr6 21873612 21873979 -160541263 + MLT1B LTR MaLR 1 382 -8 2158 102 7 3 chr6 21874726 21875053 -160540189 - AluSx SINE Alu 0 328 1 2137 125 0 13 chr6 21875322 21875626 -160539616 + AluSx SINE Alu 1 300 -12 298 316 0 11 chr6 21876106 21876201 -160539041 + GA-rich Low_complexity Low_complexity 3 96 0 344 248 92 46 chr6 21876234 21876472 -160538770 + L1M4 LINE L1 3791 4039 -2107 692 199 0 8 chr6 21876496 21876627 -160538615 + FLAM_C SINE Alu 2 131 -12 1506 170 25 28 chr6 21876634 21876916 -160538326 + AluJo SINE Alu 1 281 -31 1197 263 28 12 chr6 21877069 21877392 -160537850 + MER93a LTR ERV1 75 402 0 1799 171 3 0 chr6 21877601 21877894 -160537348 + AluJo SINE Alu 7 300 -12 2347 110 0 10 chr6 21878820 21879130 -160536112 - AluSx SINE Alu -5 307 1 401 218 40 30 chr6 21879887 21879988 -160535254 - MER5A DNA MER1_type -84 105 4 345 223 58 10 chr6 21880289 21880392 -160534850 + Charlie8 DNA MER1_type 1 108 -2309 327 351 0 30 chr6 21880393 21880524 -160534718 - MER5B DNA MER1_type 0 178 52 2395 162 14 0 chr6 21880525 21880944 -160534298 - L1MC3 LINE L1 0 7785 7361 246 261 0 15 chr6 21880945 21881010 -160534232 - MER5B DNA MER1_type -114 64 1 695 148 0 9 chr6 21881034 21881142 -160534100 + AluJ SINE Alu 24 130 -182 181 288 38 38 chr6 21881356 21881436 -160533806 + L2 LINE L2 3193 3272 0 727 164 8 8 chr6 21881518 21881640 -160533602 + AluJ SINE Alu 2 123 -189 855 229 0 7 chr6 21881693 21881871 -160533371 + AluJ SINE Alu 132 308 0 234 135 0 0 chr6 21881948 21881985 -160533257 + MLT1J LTR MaLR 99 135 -376 436 66 33 0 chr6 21882003 21882064 -160533178 + MADE1 DNA Mariner 2 64 -16 442 289 106 29 chr6 21882587 21882795 -160532447 + MLT1J LTR MaLR 241 464 -47 830 128 0 16 chr6 21882895 21883020 -160532222 - FLAM_A SINE Alu -10 123 1 504 186 39 0 chr6 21883336 21883438 -160531804 - L2 LINE L2 -22 3291 3186 285 317 106 0 chr6 21883878 21884001 -160531241 - MIR SINE MIR -31 231 96 1358 94 0 6 chr6 21884128 21884308 -160530934 - AluSg/x SINE Alu -7 303 125 984 269 100 59 chr6 21884984 21885512 -160529730 - MLT1K LTR MaLR -8 580 31 218 325 78 0 chr6 21886875 21886984 -160528258 - MIR SINE MIR -65 143 28 429 281 141 5 chr6 21887787 21887972 -160527270 + MIR SINE MIR 4 213 -49 1852 137 7 25 chr6 21889478 21889763 -160525479 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr6 21889768 21889794 -160525448 + (CA)n Simple_repeat Simple_repeat 1 26 0 2469 28 42 0 chr6 21890151 21890439 -160524803 + AluY SINE Alu 1 300 -11 272 294 56 32 chr6 21890440 21890566 -160524676 - MER94 DNA DNA -4 130 2 259 19 0 111 chr6 21891807 21891861 -160523381 + (TA)n Simple_repeat Simple_repeat 1 48 0 408 88 0 0 chr6 21891861 21891918 -160523324 + (TG)n Simple_repeat Simple_repeat 2 58 0 607 306 23 9 chr6 21892377 21892593 -160522649 + MIR SINE MIR 30 248 -14 2186 107 3 0 chr6 21893050 21893349 -160521893 - AluY SINE Alu -11 300 1 695 176 16 0 chr6 21893946 21894071 -160521171 - FLAM_A SINE Alu -2 131 5 421 189 242 0 chr6 21894096 21894191 -160521051 + MER33 DNA MER1_type 1 118 -206 894 191 27 16 chr6 21894192 21894380 -160520862 + AluJo SINE Alu 117 306 -6 706 138 78 6 chr6 21894393 21894560 -160520682 + MER33 DNA MER1_type 166 344 -19 884 199 18 6 chr6 21895281 21895493 -160519749 - AluSg/x SINE Alu 0 345 132 1476 254 72 19 chr6 21895494 21896127 -160519115 + L2 LINE L2 2622 3312 -1 387 298 90 53 chr6 21896162 21896452 -160518790 - L2 LINE L2 -125 3188 2873 2218 97 3 7 chr6 21896452 21896751 -160518491 + AluSq SINE Alu 1 298 -15 387 298 90 53 chr6 21896751 21896863 -160518379 - L2 LINE L2 -440 2873 2767 1648 235 47 28 chr6 21897384 21897568 -160517674 + MLT1D LTR MaLR 1 180 -325 2417 83 0 49 chr6 21897568 21897894 -160517348 + AluSp SINE Alu 1 310 -3 1648 235 47 28 chr6 21897894 21898202 -160517040 + MLT1D LTR MaLR 180 502 -3 1994 156 21 9 chr6 21898289 21898629 -160516613 - MER2 DNA MER2_type 0 344 1 301 98 0 0 chr6 21898726 21898767 -160516475 - MER2 DNA MER2_type -303 42 2 2295 101 0 23 chr6 21899532 21899840 -160515402 + AluSx SINE Alu 1 301 -11 223 271 0 57 chr6 21899856 21899926 -160515316 + L2 LINE L2 3199 3264 -8 241 293 13 0 chr6 21899940 21900015 -160515227 - L2 LINE L2 -1041 2273 2198 180 309 0 36 chr6 21900741 21900825 -160514417 - L2 LINE L2 -3 3269 3189 23 0 0 0 chr6 21901540 21901563 -160513679 + AT_rich Low_complexity Low_complexity 1 23 0 1789 176 3 3 chr6 21901563 21901853 -160513389 - AluJo SINE Alu -22 290 1 2196 115 0 0 chr6 21901877 21902164 -160513078 + AluSx SINE Alu 1 287 -25 213 196 0 0 chr6 21902317 21902368 -160512874 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 214 307 89 50 chr6 21902909 21903010 -160512232 - L2 LINE L2 0 3272 3168 451 225 0 0 chr6 21903364 21903444 -160511798 + MLT1G1 LTR MaLR 8 87 -508 526 196 4 6 chr6 21903448 21903693 -160511549 + AluJb SINE Alu 1 300 -2 838 220 12 0 chr6 21903731 21903899 -160511343 + AluSg/x SINE Alu 135 304 -6 1683 233 103 19 chr6 21903937 21904401 -160510841 + MLT1G3 LTR MaLR 28 530 0 951 215 17 0 chr6 21905002 21905174 -160510068 + MER45A DNA AcHobo 1 175 -3 1886 162 0 13 chr6 21905229 21905543 -160509699 + AluJb SINE Alu 1 310 -2 477 139 0 25 chr6 21905753 21905832 -160509410 + Tigger2 DNA MER2_type 1 77 -2641 * 2812 118 18 29 chr6 21905813 21906264 -160508978 + Tigger2 DNA MER2_type 2273 2718 0 2291 98 3 22 chr6 21906309 21906626 -160508616 - AluY SINE Alu 0 311 1 2207 143 95 23 chr6 21907086 21907485 -160507757 + MSTA LTR MaLR 1 428 0 2305 85 0 0 chr6 21908309 21908592 -160506650 - AluSx SINE Alu -29 283 1 3706 139 11 11 chr6 21908601 21909214 -160506028 - L1MC1 LINE L1 -15 6318 5706 22 56 0 0 chr6 21909222 21909258 -160505984 + AT_rich Low_complexity Low_complexity 1 36 0 2382 90 0 3 chr6 21909777 21910077 -160505165 - AluSp SINE Alu -14 299 1 1997 114 61 0 chr6 21910105 21910385 -160504857 + AluSg SINE Alu 1 297 -13 318 284 88 25 chr6 21910404 21910608 -160504634 - L1ME LINE L1 -282 5839 5623 659 273 110 9 chr6 21910723 21910999 -160504243 - MLT1J LTR MaLR -146 304 40 296 265 65 16 chr6 21911012 21911197 -160504045 - L1ME LINE L1 -513 5608 5384 966 261 95 46 chr6 21911667 21912057 -160503185 - MLT1I LTR MaLR 0 409 1 209 400 61 0 chr6 21912166 21912281 -160502961 + L2 LINE L2 3144 3265 -7 2080 123 3 3 chr6 21912335 21912620 -160502622 + AluSq SINE Alu 1 285 -28 899 246 128 35 chr6 21913208 21913574 -160501668 - MLT1I LTR MaLR -2 407 8 2355 75 24 0 chr6 21914372 21914664 -160500578 - AluSq SINE Alu -14 299 1 498 291 106 13 chr6 21914818 21915055 -160500187 - L1ME4a LINE L1 -258 5863 5605 1439 244 111 12 chr6 21915055 21915560 -160499682 + MLT1G LTR MaLR 1 590 0 370 288 17 8 chr6 21915560 21915678 -160499564 - L1ME4a LINE L1 -512 5609 5491 262 179 71 24 chr6 21915716 21915800 -160499442 - L1MC5 LINE L1 -37 7924 7837 849 216 24 0 chr6 21915898 21916065 -160499177 - FRAM SINE Alu -5 171 1 617 307 11 38 chr6 21916201 21916465 -160498777 - MIR SINE MIR -1 261 5 1913 125 0 48 chr6 21917607 21917919 -160497323 + AluJo SINE Alu 1 297 -15 465 211 79 0 chr6 21918150 21918264 -160496978 - MIR SINE MIR -18 244 122 2045 123 10 3 chr6 21919321 21919623 -160495619 - AluSx SINE Alu -8 304 1 423 0 0 0 chr6 21919729 21919776 -160495466 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2168 104 0 0 chr6 21920253 21920552 -160494690 + AluSq SINE Alu 1 299 -14 327 327 136 45 chr6 21920614 21920732 -160494510 + L2 LINE L2 2153 2259 -1055 252 0 0 0 chr6 21920732 21920760 -160494482 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr6 21920759 21920798 -160494444 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 327 136 45 chr6 21920760 21921214 -160494028 + L2 LINE L2 2259 2736 -578 317 294 42 8 chr6 21921251 21921370 -160493872 + LTR33 LTR ERVL 3 125 -396 282 186 17 17 chr6 21921610 21921669 -160493573 + LTR33 LTR ERVL 456 514 -7 357 278 93 0 chr6 21921670 21921767 -160493475 + L2 LINE L2 3167 3272 0 1601 173 0 35 chr6 21921908 21922042 -160493200 + AluJo SINE Alu 9 146 -166 2105 101 0 19 chr6 21922042 21922349 -160492893 + AluSx SINE Alu 1 301 -11 1601 173 0 35 chr6 21922349 21922503 -160492739 + AluJo SINE Alu 146 287 -25 487 331 35 7 chr6 21922757 21922902 -160492340 - L2 LINE L2 -8 3264 3116 2645 134 71 5 chr6 21923064 21923488 -160491754 - LTR47A LTR ERVL 0 452 1 787 171 47 12 chr6 21923685 21923855 -160491387 + AluJo SINE Alu 121 296 -16 221 262 49 0 chr6 21924866 21924927 -160490315 + L2 LINE L2 3250 3313 0 302 264 73 9 chr6 21924935 21925045 -160490197 - L1MC/D LINE L1 -1950 5858 5742 254 179 15 15 chr6 21925105 21925177 -160490065 - L1MC/D LINE L1 -526 5595 5525 2024 64 40 47 chr6 21925891 21926187 -160489055 - AluY SINE Alu -17 294 1 326 239 9 80 chr6 21926780 21926893 -160488349 + MLT1K LTR MaLR 180 284 -304 1566 176 21 3 chr6 21927134 21927424 -160487818 + AluJb SINE Alu 1 295 -17 1882 129 0 3 chr6 21927424 21927710 -160487532 + AluSq SINE Alu 21 305 -8 275 304 7 93 chr6 21929369 21929466 -160485776 + MIR SINE MIR 56 136 -118 2072 122 3 0 chr6 21929466 21929777 -160485465 + AluSx SINE Alu 1 312 0 275 304 7 93 chr6 21929777 21929829 -160485413 + MIR SINE MIR 136 191 -63 181 263 0 35 chr6 21930087 21930144 -160485098 - L2 LINE L2 -70 3202 3148 244 369 0 27 chr6 21930164 21930275 -160484967 + MER5B DNA MER1_type 3 110 -68 295 234 202 0 chr6 21930494 21930588 -160484654 - L2 LINE L2 0 3313 3201 2027 101 7 13 chr6 21931247 21931554 -160483688 + AluSx SINE Alu 1 305 -7 246 241 18 116 chr6 21931846 21931958 -160483284 + 7SK RNA RNA 34 134 -59 1250 182 103 114 chr6 21932074 21932619 -160482623 - LTR8A LTR ERV1 -2 725 187 2326 69 3 10 chr6 21932670 21932973 -160482269 - AluY SINE Alu -10 301 1 292 196 76 65 chr6 21932994 21933086 -160482156 - LTR8 LTR ERV1 -598 93 1 2040 134 0 7 chr6 21933679 21933985 -160481257 - AluSx SINE Alu -8 304 1 1703 157 70 107 chr6 21934198 21934683 -160480559 - MLT1C LTR MaLR 0 467 1 2068 115 0 3 chr6 21934869 21935165 -160480077 + AluSg SINE Alu 1 295 -15 385 132 13 13 chr6 21935165 21935241 -160480001 + GA-rich Low_complexity Low_complexity 1 76 0 272 224 0 30 chr6 21935242 21935309 -160479933 + MIR SINE MIR 63 127 -81 2066 134 0 0 chr6 21935443 21935742 -160479500 - AluSq SINE Alu -14 299 1 2030 141 0 3 chr6 21936023 21936336 -160478906 - AluJb SINE Alu 0 312 1 629 299 90 43 chr6 21936568 21936913 -160478329 + LTR16C LTR ERVL 99 459 -32 651 301 125 24 chr6 21936974 21937309 -160477933 - MLT1K LTR MaLR -11 577 209 195 129 0 0 chr6 21937325 21937356 -160477886 + (TATG)n Simple_repeat Simple_repeat 2 32 0 454 153 0 38 chr6 21937690 21937821 -160477421 + (CA)n Simple_repeat Simple_repeat 2 127 0 223 265 0 0 chr6 21937851 21937900 -160477342 - L2 LINE L2 -1 3271 3223 2082 113 13 3 chr6 21937934 21938243 -160476999 + AluSx SINE Alu 1 312 0 1421 210 26 46 chr6 21938411 21938759 -160476483 - MER58B DNA MER1_type 0 341 1 1944 98 56 7 chr6 21938839 21939124 -160476118 - AluSg SINE Alu -11 299 1 386 324 57 39 chr6 21939321 21939602 -160475640 + L2 LINE L2 3028 3313 0 236 324 174 37 chr6 21939714 21939955 -160475287 - L2 LINE L2 -349 2965 2692 206 292 22 45 chr6 21940145 21940234 -160475008 - L2 LINE L2 -1018 2296 2210 930 179 29 43 chr6 21940234 21940441 -160474801 - MER3 DNA MER1_type -4 205 2 1250 144 40 36 chr6 21940489 21940739 -160474503 + L1MB4 LINE L1 5586 5836 -344 15519 125 17 21 chr6 21940739 21941290 -160473952 - Tigger1 DNA MER2_type 0 2418 1866 1649 57 40 31 chr6 21941290 21941518 -160473724 + MER30 DNA MER1_type 1 230 0 15519 125 17 21 chr6 21941518 21941664 -160473578 - Tigger1 DNA MER2_type -552 1866 1721 1379 210 0 22 chr6 21941664 21941983 -160473259 - AluJo SINE Alu 0 312 1 15519 125 17 21 chr6 21941983 21942106 -160473136 - Tigger1 DNA MER2_type -697 1721 1599 2320 72 7 0 chr6 21942106 21942413 -160472829 - AluY SINE Alu -2 309 1 15519 125 17 21 chr6 21942413 21944019 -160471223 - Tigger1 DNA MER2_type -819 1599 1 1727 164 42 12 chr6 21944020 21944355 -160470887 + L1MB4 LINE L1 5836 6180 0 764 153 8 16 chr6 21944857 21944981 -160470261 + FLAM_C SINE Alu 1 123 -10 2123 92 0 11 chr6 21944987 21945308 -160469934 + AluSc SINE Alu 1 318 0 2255 83 0 0 chr6 21945313 21945601 -160469641 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr6 21945608 21945633 -160469609 + AT_rich Low_complexity Low_complexity 1 25 0 2135 88 14 3 chr6 21946336 21946632 -160468610 + AluSx SINE Alu 2 300 -12 401 292 41 41 chr6 21946632 21946827 -160468415 + L1ME3A LINE L1 5967 6161 -9 265 276 92 10 chr6 21947097 21947195 -160468047 + MER5A DNA MER1_type 1 106 -83 221 143 0 20 chr6 21947812 21947861 -160467381 + (TA)n Simple_repeat Simple_repeat 1 48 0 511 296 45 17 chr6 21948064 21948240 -160467002 - MER5A DNA MER1_type -3 186 6 1593 154 7 37 chr6 21948332 21948630 -160466612 + AluJb SINE Alu 1 289 -23 1454 232 126 30 chr6 21948685 21949146 -160466096 - MLT1D LTR MaLR 0 505 1 273 289 117 23 chr6 21949543 21949671 -160465571 - MIR SINE MIR -3 259 120 2238 100 3 0 chr6 21949672 21949972 -160465270 - AluSx SINE Alu -11 301 1 978 103 0 0 chr6 21949972 21950108 -160465134 - AluSq/x SINE Alu -176 136 1 352 248 5 17 chr6 21950108 21950193 -160465049 - MIR SINE MIR -121 87 3 2140 109 0 0 chr6 21950791 21951084 -160464158 + AluSq SINE Alu 1 293 -20 25 0 0 0 chr6 21952305 21952330 -160462912 + GC_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr6 21953152 21953180 -160462062 + (CCG)n Simple_repeat Simple_repeat 2 29 0 213 39 0 0 chr6 21953382 21953408 -160461834 + (CGG)n Simple_repeat Simple_repeat 3 28 0 213 217 0 65 chr6 21954143 21954235 -160461007 + (CCCCG)n Simple_repeat Simple_repeat 4 89 0 308 299 5 5 chr6 21954445 21954582 -160460660 + C-rich Low_complexity Low_complexity 1 137 0 1317 61 6 0 chr6 21956133 21956298 -160458944 - AluSg/x SINE Alu -10 302 137 2221 77 0 0 chr6 21956331 21956616 -160458626 + AluSc SINE Alu 1 285 -24 653 268 26 16 chr6 21957011 21957205 -160458037 + MIR SINE MIR 66 261 -1 21 36 0 0 chr6 21959308 21959336 -160455906 + AT_rich Low_complexity Low_complexity 1 28 0 541 274 17 29 chr6 21959713 21959888 -160455354 - MIR3 SINE MIR -3 205 33 923 203 41 0 chr6 21961127 21961324 -160453918 + MIR SINE MIR 33 237 -25 1981 130 0 10 chr6 21961402 21961710 -160453532 - AluSx SINE Alu -7 305 1 225 320 40 48 chr6 21962762 21962887 -160452355 - L2 LINE L2 -17 3296 3173 435 178 147 80 chr6 21963033 21963196 -160452046 + MER5B DNA MER1_type 5 178 0 471 303 119 34 chr6 21963378 21963672 -160451570 - MER102b DNA MER1_type -22 319 1 752 281 54 9 chr6 21963683 21963907 -160451335 - MIR SINE MIR 0 262 29 195 282 127 14 chr6 21963995 21964066 -160451176 - MER5A DNA MER1_type 0 189 111 * 244 257 43 14 chr6 21964017 21964087 -160451155 + MER5A DNA MER1_type 43 114 -75 221 291 205 0 chr6 21965659 21965776 -160449466 + MIR SINE MIR 64 204 -58 841 163 62 12 chr6 21966212 21966372 -160448870 - MER20 DNA MER1_type -51 168 1 22 56 0 0 chr6 21966433 21966469 -160448773 + AT_rich Low_complexity Low_complexity 1 36 0 567 288 88 3 chr6 21966752 21966933 -160448309 + MIR SINE MIR 50 242 -20 510 292 8 15 chr6 21967112 21967242 -160448000 - L2 LINE L2 -3 3310 3182 652 208 67 67 chr6 21967304 21967482 -160447760 + MER5A DNA MER1_type 2 179 -10 24 67 0 0 chr6 21968296 21968341 -160446901 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr6 21969669 21969700 -160445542 + AT_rich Low_complexity Low_complexity 1 31 0 834 285 66 45 chr6 21969756 21970286 -160444956 - L1ME4a LINE L1 -104 6017 5477 1874 133 3 11 chr6 21970318 21970654 -160444588 - AluSx SINE Alu 0 334 1 1295 169 0 0 chr6 21970656 21970869 -160444373 - AluJb SINE Alu -14 298 86 548 287 27 5 chr6 21970939 21971127 -160444115 - MIR SINE MIR -2 260 69 234 0 0 0 chr6 21971227 21971253 -160443989 + (TG)n Simple_repeat Simple_repeat 2 27 0 14803 135 25 12 chr6 21971263 21972475 -160442767 - Tigger1 DNA MER2_type 0 2418 1223 1706 55 0 0 chr6 21972475 21972676 -160442566 - 7SLRNA srpRNA srpRNA -119 201 1 14803 135 25 12 chr6 21972676 21973825 -160441417 - Tigger1 DNA MER2_type -1195 1223 27 1916 165 58 3 chr6 21973921 21974248 -160440994 - MER7A DNA MER2_type -2 344 2 2296 86 0 3 chr6 21974267 21974557 -160440685 - AluSg SINE Alu -21 289 1 2381 76 0 3 chr6 21974567 21974858 -160440384 - AluSq SINE Alu -23 290 1 360 0 0 0 chr6 21974999 21975039 -160440203 + (TG)n Simple_repeat Simple_repeat 2 41 0 254 196 0 0 chr6 21975168 21975219 -160440023 + MER4-int LTR ERV1 1112 1162 -5436 305 267 35 69 chr6 21975239 21975441 -160439801 - L1ME4a LINE L1 -1306 4840 4646 491 264 88 26 chr6 21975534 21975727 -160439515 - MIR SINE MIR -49 213 9 2345 84 0 29 chr6 21976176 21976486 -160438756 - AluSx SINE Alu -11 301 1 302 213 160 21 chr6 21978272 21978366 -160436876 + MIR3 SINE MIR 93 199 -9 215 229 215 97 chr6 21978912 21979002 -160436240 + MIR SINE MIR 14 92 -170 2334 113 3 0 chr6 21979002 21979311 -160435931 - AluSx SINE Alu -2 310 1 215 229 215 97 chr6 21979311 21979364 -160435878 + MIR SINE MIR 92 174 -88 1448 168 0 5 chr6 21979740 21979960 -160435282 + MER20 DNA MER1_type 1 219 0 941 166 155 10 chr6 21980050 21980243 -160434999 + Tigger7 DNA MER2_type 9 229 -476 620 154 19 0 chr6 21980259 21980363 -160434879 + Tigger7 DNA MER2_type 2382 2487 0 33 0 0 0 chr6 21980671 21980704 -160434538 + AT_rich Low_complexity Low_complexity 1 33 0 1001 153 21 26 chr6 21980923 21981113 -160434129 - MER53 DNA DNA 0 189 1 1783 139 0 0 chr6 21981575 21981833 -160433409 + AluSx SINE Alu 45 302 -10 386 227 72 0 chr6 21982483 21982580 -160432662 + LTR16C LTR ERVL 388 491 0 1549 175 118 3 chr6 21982588 21982919 -160432323 - MLT1B LTR MaLR -3 387 19 180 302 19 0 chr6 21983376 21983429 -160431813 + MIR3 SINE MIR 146 199 -9 467 265 141 14 chr6 21983630 21983916 -160431326 + L2 LINE L2 2909 3312 -1 1986 160 19 43 chr6 21984211 21984629 -160430613 + Charlie4a DNA MER1_type 85 492 -16 609 141 33 0 chr6 21985973 21986065 -160429177 - AluJ/FLAM SINE Alu -216 96 2 2453 81 0 0 chr6 21986259 21986557 -160428685 + AluSc SINE Alu 1 298 -11 2401 108 0 0 chr6 21986763 21987069 -160428173 - AluSx SINE Alu -6 306 1 1446 149 27 0 chr6 21987140 21987241 -160428001 + MER30 DNA MER1_type 3 100 -130 243 0 0 0 chr6 21987241 21987268 -160427974 + (CA)n Simple_repeat Simple_repeat 2 28 0 1446 149 27 0 chr6 21987268 21987388 -160427854 + MER30 DNA MER1_type 100 230 0 1626 175 3 37 chr6 21987626 21987923 -160427319 + AluJo SINE Alu 1 287 -25 311 274 116 41 chr6 21988556 21988702 -160426540 - MIR3 SINE MIR -30 178 22 281 268 131 65 chr6 21988830 21988998 -160426244 + MIR SINE MIR 7 185 -77 1721 141 40 24 chr6 21990319 21990616 -160424626 - AluJo SINE Alu -10 302 1 3368 150 27 41 chr6 21991807 21992362 -160422880 - L1MB4 LINE L1 -25 6155 5609 1743 139 54 31 chr6 21992362 21992656 -160422586 - AluSx SINE Alu -11 301 1 3368 150 27 41 chr6 21992656 21992740 -160422502 - L1MB4 LINE L1 -571 5609 5525 2183 95 10 3 chr6 21993475 21993769 -160421473 + AluSq SINE Alu 1 296 -17 1032 171 34 6 chr6 21994246 21994421 -160420821 + AluJo SINE Alu 1 180 -132 1558 170 83 0 chr6 21994718 21994994 -160420248 + AluJb SINE Alu 1 299 -13 284 215 63 13 chr6 21995726 21995805 -160419437 + L2 LINE L2 3226 3308 -5 1932 81 12 4 chr6 21996027 21996286 -160418956 - AluSg SINE Alu -9 301 41 2945 156 117 9 chr6 21996446 21996992 -160418250 - MER6A DNA MER2_type 0 605 1 1939 120 7 30 chr6 21997354 21997655 -160417587 - AluSx SINE Alu -18 294 1 228 67 0 0 chr6 21998128 21998158 -160417084 + (GA)n Simple_repeat Simple_repeat 1 30 0 495 237 8 15 chr6 21998634 21998765 -160416477 - MIR3 SINE MIR -26 182 53 605 210 89 25 chr6 22000249 22000406 -160414836 - L1MC/D LINE L1 -2075 5733 5567 6702 119 13 7 chr6 22000406 22003121 -160412121 - L1PA13 LINE L1 -4 6159 3374 612 152 20 0 chr6 22003163 22003262 -160411980 - U6 snRNA snRNA -6 101 1 543 258 56 76 chr6 22003306 22003456 -160411786 - L1MC/D LINE L1 -832 5314 5163 2251 88 0 20 chr6 22003456 22003753 -160411489 + AluSc SINE Alu 1 291 -18 543 258 56 76 chr6 22003753 22003780 -160411462 - L1MC/D LINE L1 -983 5163 5137 279 0 0 0 chr6 22003780 22003811 -160411431 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 543 258 56 76 chr6 22003811 22004191 -160411051 - L1MC/D LINE L1 -1009 5137 4956 1786 170 20 0 chr6 22004191 22004497 -160410745 - AluJo SINE Alu 0 312 1 543 258 56 76 chr6 22004497 22004578 -160410664 - L1MC/D LINE L1 -1190 4956 4875 756 189 67 33 chr6 22004933 22005113 -160410129 + MER5A DNA MER1_type 1 186 -3 514 282 17 23 chr6 22005652 22005826 -160409416 + MER5B DNA MER1_type 1 173 -5 220 194 177 32 chr6 22007012 22007074 -160408168 - MIR3 SINE MIR -49 159 89 21 0 0 0 chr6 22007100 22007121 -160408121 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 22007490 22007517 -160407725 + AT_rich Low_complexity Low_complexity 1 27 0 1747 157 6 45 chr6 22007963 22008275 -160406967 - AluSx SINE Alu -12 300 1 2040 105 7 33 chr6 22009770 22010076 -160405166 + AluSx SINE Alu 1 298 -14 1793 134 31 0 chr6 22010477 22010738 -160404504 + AluJb SINE Alu 29 297 -15 422 278 18 100 chr6 22011280 22011502 -160403740 - L1ME LINE L1 -313 5808 5612 2432 100 0 0 chr6 22011502 22011813 -160403429 + AluSx SINE Alu 1 311 -1 422 278 18 100 chr6 22011813 22011871 -160403371 - L1ME LINE L1 -509 5612 5551 2209 77 0 4 chr6 22012000 22012274 -160402968 + AluY SINE Alu 1 273 -38 249 293 111 13 chr6 22012702 22012927 -160402315 - L1P4 LINE L1 -665 5501 5255 249 298 147 0 chr6 22013041 22013232 -160402010 - L1ME LINE L1 -1155 4991 4773 2240 119 0 0 chr6 22013244 22013546 -160401696 - AluSx SINE Alu -10 302 1 1487 147 14 142 chr6 22013615 22014011 -160401231 - AluJo SINE Alu 0 352 1 771 195 0 0 chr6 22014056 22014179 -160401063 + FLAM_C SINE Alu 2 124 -19 742 222 49 15 chr6 22014203 22014406 -160400836 - L1MEc LINE L1 -4582 1814 1605 3190 154 47 25 chr6 22014456 22015008 -160400234 - MER21B LTR ERV1 -52 811 248 1383 152 124 56 chr6 22015009 22015331 -160399911 - MER21B-int LTR ERV1 -1783 2408 2065 1320 192 46 46 chr6 22015319 22015621 -160399621 - MER21B-int LTR ERV1 -2242 1949 1648 * 767 211 7 0 chr6 22015674 22015821 -160399421 - MER21B-int LTR ERV1 -2076 4682 4535 1486 227 28 25 chr6 22015900 22016253 -160398989 - MER21B-int LTR ERV1 -2554 1637 1284 5473 68 84 42 chr6 22016255 22016923 -160398319 - L1PB1 LINE L1 0 6151 5440 1973 137 0 0 chr6 22016923 22017200 -160398042 - AluSx SINE Alu -34 278 2 5473 68 84 42 chr6 22017200 22017367 -160397875 - L1PB1 LINE L1 -711 5440 5281 1676 265 32 47 chr6 22017367 22017471 -160397771 - MER21B-int LTR ERV1 -2897 1294 1190 2211 101 0 0 chr6 22017471 22017768 -160397474 - AluSg1 SINE Alu -12 297 1 1676 265 32 47 chr6 22017768 22018169 -160397073 - MER21B-int LTR ERV1 -3001 1190 797 3314 170 33 41 chr6 22018169 22018810 -160396432 - MER21B-int LTR ERV1 -3555 636 1 4049 170 36 10 chr6 22018870 22019565 -160395677 - MER21B LTR ERV1 -65 798 86 283 309 0 12 chr6 22019599 22019680 -160395562 - LTR67 LTR ERVL -476 81 2 723 252 100 41 chr6 22019705 22020194 -160395048 + HAL1 LINE L1 1812 2372 -135 185 268 0 18 chr6 22020488 22020544 -160394698 - L2 LINE L2 -667 2647 2593 254 133 67 0 chr6 22021140 22021185 -160394057 + L2 LINE L2 3262 3309 -4 293 244 30 60 chr6 22021764 22021932 -160393310 - L1ME4a LINE L1 -4 6117 5955 2223 101 10 0 chr6 22022089 22022387 -160392855 + AluSq SINE Alu 1 301 -12 292 250 8 52 chr6 22022544 22022670 -160392572 - L1ME4a LINE L1 -34 6036 1204 408 20 0 0 chr6 22022814 22022863 -160392379 + (CA)n Simple_repeat Simple_repeat 2 50 0 1475 192 75 0 chr6 22023194 22023475 -160391767 + AluJo SINE Alu 2 303 -9 205 229 241 0 chr6 22023483 22023566 -160391676 + MIR SINE MIR 66 168 -94 431 309 39 11 chr6 22024117 22024298 -160390944 + MIR SINE MIR 73 258 -4 338 321 58 14 chr6 22024345 22024648 -160390594 - MLT1K LTR MaLR -37 551 199 701 166 0 65 chr6 22024886 22025025 -160390217 - FLAM_A SINE Alu -3 130 1 1685 149 87 4 chr6 22026306 22026581 -160388661 - AluSx SINE Alu -14 298 1 2381 75 0 7 chr6 22026878 22027173 -160388069 + AluY SINE Alu 1 293 -18 529 270 41 63 chr6 22027177 22027530 -160387712 - MLT1K LTR MaLR -55 533 151 1053 126 69 82 chr6 22027824 22027927 -160387315 - Tigger2a DNA MER2_type -2278 430 327 497 174 124 25 chr6 22027927 22028048 -160387194 - FLAM_C SINE Alu 0 133 1 1053 126 69 82 chr6 22028048 22028175 -160387067 - Tigger2a DNA MER2_type -2381 327 203 516 219 70 0 chr6 22028331 22028445 -160386797 - MER5A DNA MER1_type -6 183 62 1113 121 17 116 chr6 22028514 22028698 -160386544 - Tigger2a DNA MER2_type -2499 209 51 1852 149 0 23 chr6 22028698 22029000 -160386242 + AluJb SINE Alu 1 295 -17 1113 121 17 116 chr6 22029000 22029047 -160386195 - Tigger2a DNA MER2_type -2657 51 1 619 170 222 0 chr6 22029056 22029209 -160386033 - MER33 DNA MER1_type -137 187 1 2202 105 3 7 chr6 22029315 22029610 -160385632 + AluSx SINE Alu 1 294 -18 241 241 69 0 chr6 22030074 22030132 -160385110 - L2 LINE L2 -42 3230 3169 192 175 25 0 chr6 22031662 22031702 -160383540 - L2 LINE L2 -1 3312 3272 238 273 0 0 chr6 22032308 22032363 -160382879 + CT-rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr6 22033123 22033152 -160382090 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr6 22033388 22033415 -160381827 + (TA)n Simple_repeat Simple_repeat 1 27 0 267 133 0 0 chr6 22033826 22033871 -160381371 + (TG)n Simple_repeat Simple_repeat 2 46 0 298 57 0 0 chr6 22035203 22035238 -160380004 - U2 snRNA snRNA -153 35 1 1214 126 0 0 chr6 22035594 22035761 -160379481 + AluSg/x SINE Alu 134 300 -10 2039 127 3 7 chr6 22036084 22036383 -160378859 + AluSx SINE Alu 1 298 -14 2504 42 0 0 chr6 22037073 22037360 -160377882 - AluY SINE Alu -24 287 1 1022 196 4 71 chr6 22038504 22038744 -160376498 - MER58A DNA MER1_type 0 224 1 2262 79 4 0 chr6 22039503 22039806 -160375436 + AluSc SINE Alu 2 305 0 975 122 20 0 chr6 22040125 22040272 -160374970 + FAM SINE Alu 20 169 -16 1785 159 36 0 chr6 22040481 22040758 -160374484 + AluJo SINE Alu 1 287 -25 24 32 0 0 chr6 22041363 22041394 -160373848 + AT_rich Low_complexity Low_complexity 1 31 0 196 281 18 0 chr6 22042864 22042921 -160372321 + L2 LINE L2 3252 3309 -4 196 115 0 58 chr6 22043996 22044048 -160371194 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 2398 90 6 6 chr6 22044574 22044886 -160370356 - AluSx SINE Alu 0 312 1 358 261 67 25 chr6 22045173 22045292 -160369950 - L3 LINE CR1 -547 1030 907 335 180 22 22 chr6 22045390 22045479 -160369763 - L1ME4a LINE L1 -105 6016 5928 2317 106 3 0 chr6 22045479 22045790 -160369452 - AluSx SINE Alu 0 312 1 1620 162 0 24 chr6 22045802 22046099 -160369143 - AluJo SINE Alu 0 312 23 2179 118 3 0 chr6 22046256 22046552 -160368690 - AluSx SINE Alu -15 297 1 978 218 105 16 chr6 22046673 22046930 -160368312 - L1MB5 LINE L1 -10 6164 5885 1749 107 21 0 chr6 22046930 22047172 -160368070 - AluSx SINE Alu -6 306 60 1963 115 23 36 chr6 22047215 22047519 -160367723 + AluSx SINE Alu 1 300 -12 2431 80 0 7 chr6 22047519 22047819 -160367423 + AluSc SINE Alu 1 298 -11 284 159 0 16 chr6 22047940 22048003 -160367239 + GA-rich Low_complexity Low_complexity 4 65 0 192 267 0 0 chr6 22048122 22048167 -160367075 - L2 LINE L2 -22 3291 3247 360 0 0 0 chr6 22050194 22050234 -160365008 + (TG)n Simple_repeat Simple_repeat 2 41 0 1665 109 0 0 chr6 22050699 22050919 -160364323 - AluSx SINE Alu -75 237 18 1955 135 27 80 chr6 22050919 22050964 -160364278 + L1MB1 LINE L1 5788 5834 -334 716 101 0 0 chr6 22050964 22051063 -160364179 + HY3 scRNA scRNA 2 100 -1 1955 135 27 80 chr6 22051063 22051418 -160363824 + L1MB1 LINE L1 5834 6167 -1 9956 230 49 21 chr6 22051423 22051634 -160363608 + L1M4 LINE L1 2269 2473 -3673 2368 70 3 10 chr6 22051634 22051934 -160363308 + AluY SINE Alu 1 298 -13 9956 230 49 21 chr6 22051934 22052046 -160363196 + L1M4 LINE L1 2473 2580 -3566 2347 104 0 3 chr6 22052046 22052354 -160362888 + AluSx SINE Alu 1 307 -5 9956 230 49 21 chr6 22052354 22053977 -160361265 + L1M4 LINE L1 2580 4156 -1990 2178 91 54 7 chr6 22053977 22054273 -160360969 + AluY SINE Alu 1 310 -1 9956 230 49 21 chr6 22054273 22054438 -160360804 + L1M4 LINE L1 4156 4315 -1831 2434 95 0 0 chr6 22054438 22054742 -160360500 + AluSx SINE Alu 1 304 -8 9956 230 49 21 chr6 22054742 22055425 -160359817 + L1M4 LINE L1 4315 5144 -1002 26 30 0 0 chr6 22055545 22055578 -160359664 + AT_rich Low_complexity Low_complexity 1 33 0 1378 165 0 0 chr6 22055809 22056021 -160359221 + AluSx SINE Alu 1 212 -100 455 69 0 0 chr6 22056021 22056079 -160359163 + AluSq/x SINE Alu 78 135 -177 1879 157 23 0 chr6 22056079 22056384 -160358858 + AluSx SINE Alu 1 312 0 2143 128 7 0 chr6 22057382 22057679 -160357563 - AluSx SINE Alu -13 299 1 2177 109 3 0 chr6 22057924 22058248 -160356994 - AluSq SINE Alu 0 325 1 1358 209 50 26 chr6 22059128 22059423 -160355819 + MLT2D LTR ERVL 68 373 -41 305 24 24 0 chr6 22059423 22059465 -160355777 + (CA)n Simple_repeat Simple_repeat 1 43 0 1358 209 50 26 chr6 22059465 22059508 -160355734 + MLT2D LTR ERVL 373 414 0 1731 140 16 51 chr6 22059571 22059886 -160355356 + AluJo SINE Alu 1 304 -8 404 236 112 39 chr6 22060093 22060271 -160354971 + MLT1K LTR MaLR 395 585 -3 216 0 0 0 chr6 22060323 22060347 -160354895 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 559 165 21 0 chr6 22060479 22060576 -160354666 + MER53 DNA DNA 3 101 -88 1679 113 36 0 chr6 22060739 22060961 -160354281 + AluSx SINE Alu 1 230 -82 615 341 46 0 chr6 22061006 22061290 -160353952 - L2 LINE L2 -574 2740 2444 1587 175 7 24 chr6 22061421 22061713 -160353529 + AluJo SINE Alu 1 287 -25 2496 94 0 0 chr6 22061741 22062049 -160353193 + AluSg SINE Alu 1 308 -2 26 64 0 0 chr6 22062098 22062145 -160353097 + AT_rich Low_complexity Low_complexity 1 47 0 1691 153 52 8 chr6 22062169 22062437 -160352805 - AluJb SINE Alu -22 290 11 345 203 0 0 chr6 22062447 22062516 -160352726 - MIR SINE MIR -110 152 84 2263 175 15 111 chr6 22062584 22063112 -160352130 - MLT1F LTR MaLR -10 532 64 2255 99 3 3 chr6 22063112 22063414 -160351828 + AluY SINE Alu 1 302 -9 2263 175 15 111 chr6 22063414 22063473 -160351769 - MLT1F LTR MaLR -478 64 1 273 281 154 41 chr6 22063743 22063964 -160351278 + L2 LINE L2 2813 3058 -255 2194 113 0 23 chr6 22064214 22064523 -160350719 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr6 22064604 22064630 -160350612 + AT_rich Low_complexity Low_complexity 1 26 0 768 287 26 0 chr6 22064705 22064900 -160350342 + MER63A DNA MER1_type 7 206 -4 1079 164 0 0 chr6 22065275 22065440 -160349802 + FAM SINE Alu 1 165 -10 184 262 0 0 chr6 22065449 22065491 -160349751 - MIR SINE MIR -81 127 86 2237 132 0 6 chr6 22065493 22065804 -160349438 - AluSx SINE Alu -3 309 1 2374 83 0 3 chr6 22065828 22066129 -160349113 - AluY SINE Alu -11 300 1 1780 137 49 7 chr6 22066430 22066714 -160348528 - AluJo SINE Alu -16 296 1 360 299 63 124 chr6 22066909 22066998 -160348244 + MLT1K LTR MaLR 27 120 -468 2187 121 10 0 chr6 22066998 22067296 -160347946 - AluSx SINE Alu -11 301 1 360 299 63 124 chr6 22067296 22067352 -160347890 + MLT1K LTR MaLR 120 178 -410 322 167 0 0 chr6 22067352 22067406 -160347836 + L1MB7 LINE L1 6131 6184 0 360 299 63 124 chr6 22067406 22067607 -160347635 + MLT1K LTR MaLR 178 353 -235 811 212 141 97 chr6 22067704 22068209 -160347033 - MER34B LTR ERV1 0 565 39 1131 159 221 0 chr6 22068227 22068475 -160346767 + AluJo SINE Alu 9 306 0 274 109 19 28 chr6 22068488 22068542 -160346700 - MER34C LTR ERV1 -502 83 1 1983 144 3 7 chr6 22068673 22068972 -160346270 + AluSx SINE Alu 1 298 -14 2304 116 0 3 chr6 22069066 22069377 -160345865 + AluSx SINE Alu 1 310 -2 2367 100 3 0 chr6 22069649 22069950 -160345292 - AluSp SINE Alu -10 303 2 2097 116 0 0 chr6 22070387 22070671 -160344571 + AluSx SINE Alu 1 284 -28 974 189 6 0 chr6 22070704 22070873 -160344369 + AluJb SINE Alu 137 306 -6 33 0 0 0 chr6 22071155 22071188 -160344054 + AT_rich Low_complexity Low_complexity 1 33 0 468 121 0 0 chr6 22071189 22071272 -160343970 - L1MB4 LINE L1 0 6180 6098 2253 101 0 3 chr6 22071272 22071570 -160343672 - AluSx SINE Alu -15 297 1 27 0 0 0 chr6 22071618 22071645 -160343597 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr6 22071666 22071694 -160343548 + AT_rich Low_complexity Low_complexity 1 28 0 4185 131 17 27 chr6 22071694 22071935 -160343307 - L1MA4 LINE L1 -11 6289 6047 1980 146 0 20 chr6 22071935 22072236 -160343006 - AluSx SINE Alu -17 295 1 4185 131 17 27 chr6 22072236 22072743 -160342499 - L1MA4 LINE L1 -253 6047 5548 1737 146 3 51 chr6 22073267 22073582 -160341660 - AluJb SINE Alu -12 300 1 202 188 43 43 chr6 22073900 22073969 -160341273 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 2418 92 0 9 chr6 22075319 22075635 -160339607 - AluSq SINE Alu 0 313 1 488 195 30 67 chr6 22075781 22075851 -160339391 + L1MD3 LINE L1 7828 7899 -96 5129 65 5 0 chr6 22075851 22076508 -160338734 + L1PA6 LINE L1 5495 6154 0 488 195 30 67 chr6 22076508 22076601 -160338641 + L1MD3 LINE L1 7899 7985 -10 1130 268 194 35 chr6 22076608 22077093 -160338149 + L2 LINE L2 2329 2890 -424 1427 135 0 5 chr6 22077096 22077303 -160337939 - AluJo SINE Alu -24 288 83 884 283 62 64 chr6 22077309 22077621 -160337621 + L2 LINE L2 2891 3203 -110 2391 85 10 0 chr6 22077621 22077928 -160337314 - AluSg SINE Alu 0 310 1 884 283 62 64 chr6 22077928 22078021 -160337221 + L2 LINE L2 3203 3295 -18 704 207 16 96 chr6 22078193 22078406 -160336836 - MLT1K LTR MaLR -4 584 392 2405 87 0 0 chr6 22078406 22078705 -160336537 + AluY SINE Alu 1 299 -12 704 207 16 96 chr6 22078705 22078742 -160336500 - MLT1K LTR MaLR -196 392 354 1693 172 10 10 chr6 22078987 22079283 -160335959 + AluJb SINE Alu 11 306 -6 1036 90 0 0 chr6 22079602 22079736 -160335506 + AluSq/x SINE Alu 1 134 -178 2122 115 0 16 chr6 22079737 22080042 -160335200 + AluSx SINE Alu 1 300 -12 1197 123 0 0 chr6 22080351 22080514 -160334728 + AluSx SINE Alu 1 163 -149 24 0 0 0 chr6 22080569 22080593 -160334649 + AT_rich Low_complexity Low_complexity 1 24 0 1621 178 7 7 chr6 22080786 22081073 -160334169 + AluJo SINE Alu 1 287 -25 1635 174 45 3 chr6 22081111 22081399 -160333843 - AluJb SINE Alu -12 300 1 2280 101 0 0 chr6 22081539 22081835 -160333407 - AluSg SINE Alu -14 296 1 2263 105 0 0 chr6 22082288 22082584 -160332658 - AluY SINE Alu -15 296 1 2302 102 3 7 chr6 22082584 22082889 -160332353 - AluSq SINE Alu -7 306 3 278 277 17 25 chr6 22082912 22083031 -160332211 - L1MC/D LINE L1 -2016 5792 5675 291 253 111 10 chr6 22083069 22083168 -160332074 - L1MC/D LINE L1 -2090 5718 5610 190 330 113 22 chr6 22083221 22083406 -160331836 + L2 LINE L2 2442 2643 -671 243 0 0 0 chr6 22083868 22083895 -160331347 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1112 169 0 0 chr6 22084007 22084184 -160331058 + AluJb SINE Alu 132 308 -4 663 139 0 26 chr6 22084294 22084409 -160330833 - FLAM_A SINE Alu -1 141 30 418 291 145 9 chr6 22084860 22085087 -160330155 + MIR SINE MIR 3 260 -2 329 327 90 41 chr6 22086310 22086576 -160328666 + L2 LINE L2 1908 2186 -1128 778 130 48 0 chr6 22086580 22086726 -160328516 - L1M4 LINE L1 -670 5514 5362 1475 159 31 38 chr6 22086733 22087022 -160328220 - AluJb SINE Alu -25 287 1 1082 200 4 36 chr6 22087045 22087320 -160327922 - L1M4 LINE L1 -1010 5136 4871 565 254 57 0 chr6 22087375 22087497 -160327745 - MER5A DNA MER1_type 0 189 61 604 146 146 24 chr6 22087497 22087620 -160327622 + FLAM_C SINE Alu 1 138 -5 354 197 15 0 chr6 22087624 22087690 -160327552 - MER5A DNA MER1_type -122 67 1 372 244 89 41 chr6 22087692 22087815 -160327427 - MER5B DNA MER1_type 0 178 50 697 62 0 0 chr6 22087816 22087912 -160327330 - AluY SINE Alu 0 311 216 247 263 0 0 chr6 22087918 22087975 -160327267 - MER5B DNA MER1_type -120 58 2 280 367 86 8 chr6 22087986 22088114 -160327128 - MER5B DNA MER1_type -2 176 39 2439 78 3 7 chr6 22088114 22088420 -160326822 + AluSq SINE Alu 2 306 -7 340 260 67 0 chr6 22088804 22088908 -160326334 - L1MC/D LINE L1 -2150 5658 5548 185 324 261 18 chr6 22089166 22089277 -160325965 + MIR SINE MIR 16 153 -55 220 338 0 50 chr6 22089518 22089598 -160325644 - L3 LINE CR1 -7 1570 1495 940 262 101 42 chr6 22089639 22090025 -160325217 - L2 LINE L2 -1 3312 2904 2401 255 144 31 chr6 22090071 22090866 -160324376 - L2 LINE L2 -15 3298 2594 2257 105 0 3 chr6 22090866 22091161 -160324081 - AluSg SINE Alu -16 294 1 2401 255 144 31 chr6 22091161 22091247 -160323995 - L2 LINE L2 -719 2594 2519 2184 114 0 3 chr6 22091247 22091544 -160323698 - AluSq SINE Alu -17 296 1 2401 255 144 31 chr6 22091544 22091834 -160323408 - L2 LINE L2 -794 2519 2011 266 159 261 0 chr6 22091837 22091925 -160323317 + MER103 DNA DNA 55 165 -1 925 282 111 24 chr6 22092013 22092435 -160322807 - MLT1K LTR MaLR -4 584 126 2362 82 3 0 chr6 22092454 22092747 -160322495 - AluSp SINE Alu -18 295 2 460 234 57 14 chr6 22093183 22093324 -160321918 + MIR SINE MIR 89 235 -27 4329 162 54 7 chr6 22093382 22094236 -160321006 - L1MD1 LINE L1 -11 6625 5732 2217 203 44 50 chr6 22094263 22094521 -160320721 - L1MD1 LINE L1 -885 5655 5397 2293 112 0 3 chr6 22094521 22094826 -160320416 - AluSx SINE Alu -8 304 1 2217 203 44 50 chr6 22094826 22095104 -160320138 - L1MD1 LINE L1 -1143 5397 5121 2635 33 3 0 chr6 22095104 22095410 -160319832 + AluY SINE Alu 1 307 -4 2217 203 44 50 chr6 22095410 22095573 -160319669 - L1MD1 LINE L1 -1419 5121 4959 1464 221 183 16 chr6 22095570 22095754 -160319488 - L1MD1 LINE L1 -5942 598 446 * 282 29 0 0 chr6 22095754 22095789 -160319453 + (TG)n Simple_repeat Simple_repeat 2 36 0 1464 221 183 16 chr6 22095789 22096096 -160319146 - L1MD1 LINE L1 -6094 446 25 21 36 0 0 chr6 22096114 22096142 -160319100 + AT_rich Low_complexity Low_complexity 1 28 0 1947 135 21 0 chr6 22096227 22096509 -160318733 - AluSx SINE Alu -14 298 11 260 171 0 0 chr6 22096509 22096550 -160318692 - Alu SINE Alu -262 41 1 525 267 65 75 chr6 22096571 22097080 -160318162 - L1MC5 LINE L1 -186 7775 7272 2253 110 0 0 chr6 22097341 22097642 -160317600 - AluSx SINE Alu -11 301 1 1281 146 39 26 chr6 22097745 22097978 -160317264 - MER46A DNA MER2_type 0 236 1 1788 164 7 3 chr6 22099048 22099335 -160315907 + AluJb SINE Alu 9 296 -16 21 36 0 0 chr6 22099505 22099533 -160315709 + AT_rich Low_complexity Low_complexity 1 28 0 3799 214 65 48 chr6 22099662 22100369 -160314873 - L1MC4a LINE L1 0 7808 7114 2039 117 7 0 chr6 22100369 22100695 -160314547 - AluSx SINE Alu 0 328 1 3799 214 65 48 chr6 22100695 22100774 -160314468 - L1MC4a LINE L1 -694 7114 7038 2128 113 7 3 chr6 22100774 22101066 -160314176 - AluSx SINE Alu -19 293 1 3799 214 65 48 chr6 22101066 22101456 -160313786 - L1MC4a LINE L1 -770 7038 6611 255 298 124 50 chr6 22101531 22101649 -160313593 - MIR SINE MIR -18 244 109 2366 86 3 0 chr6 22101649 22101953 -160313289 - AluY SINE Alu -6 305 1 255 298 124 50 chr6 22101953 22101995 -160313247 - MIR SINE MIR -153 109 72 2390 70 0 10 chr6 22102159 22102458 -160312784 - AluY SINE Alu -15 296 1 182 33 67 0 chr6 22102669 22102699 -160312543 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 622 155 10 10 chr6 22102701 22102804 -160312438 - FLAM_A SINE Alu -27 115 13 1547 158 13 49 chr6 22102842 22103146 -160312096 + AluJb SINE Alu 1 293 -19 23 54 0 0 chr6 22103204 22103241 -160312001 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr6 22103446 22103483 -160311759 + AT_rich Low_complexity Low_complexity 1 37 0 2254 107 3 0 chr6 22104016 22104314 -160310928 + AluSx SINE Alu 1 299 -13 1855 156 0 3 chr6 22104411 22104700 -160310542 - AluSx SINE Alu -24 288 1 1441 139 10 0 chr6 22104704 22104906 -160310336 - AluSx SINE Alu -108 204 1 411 310 0 23 chr6 22105172 22105346 -160309896 - MARNA DNA Mariner -165 421 252 268 193 53 0 chr6 22105501 22105558 -160309684 + MARNA DNA Mariner 456 515 -71 2217 129 0 0 chr6 22106097 22106407 -160308835 - AluSg SINE Alu 0 310 1 2493 61 0 0 chr6 22106414 22106710 -160308532 - AluY SINE Alu -15 296 1 2047 136 0 0 chr6 22106871 22107165 -160308077 + AluSq SINE Alu 1 294 -19 2208 84 0 17 chr6 22107544 22107905 -160307337 + AluY SINE Alu 1 356 0 246 156 0 0 chr6 22108328 22108373 -160306869 + (TA)n Simple_repeat Simple_repeat 2 46 0 2102 105 0 14 chr6 22108433 22108757 -160306485 + AluSx SINE Alu 1 320 0 706 93 0 0 chr6 22109620 22109717 -160305525 - AluJ/FLAM SINE Alu -215 97 1 22 35 0 0 chr6 22110516 22110545 -160304697 + AT_rich Low_complexity Low_complexity 1 29 0 2403 90 7 0 chr6 22111948 22112258 -160302984 + AluSx SINE Alu 1 312 0 374 266 252 7 chr6 22112289 22112428 -160302814 + MIR SINE MIR 37 209 -53 1943 135 38 10 chr6 22113256 22113545 -160301697 + AluSx SINE Alu 1 297 -15 699 218 0 0 chr6 22114301 22114434 -160300808 - FLAM_A SINE Alu 0 133 1 233 287 93 39 chr6 22114755 22114884 -160300358 + MIR SINE MIR 63 198 -64 582 219 0 0 chr6 22114931 22115036 -160300206 + FLAM_A SINE Alu 18 122 -20 23 0 0 0 chr6 22115928 22115951 -160299291 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22117269 22117297 -160297945 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr6 22117644 22117672 -160297570 + AT_rich Low_complexity Low_complexity 1 28 0 552 104 0 0 chr6 22117968 22118045 -160297197 - MADE1 DNA Mariner -1 79 3 207 0 0 0 chr6 22118487 22118510 -160296732 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1803 155 0 37 chr6 22118516 22118669 -160296573 - AluJo SINE Alu -26 286 148 2282 64 0 7 chr6 22118669 22118964 -160296278 - AluY SINE Alu -17 294 2 1803 155 0 37 chr6 22118964 22119107 -160296135 - AluJo SINE Alu -164 148 1 2596 39 3 6 chr6 22119241 22119553 -160295689 + AluY SINE Alu 1 311 0 265 273 230 0 chr6 22119672 22119833 -160295409 + L2 LINE L2 3112 3309 -4 39 0 0 0 chr6 22120859 22120898 -160294344 + AT_rich Low_complexity Low_complexity 1 39 0 2188 96 14 0 chr6 22120898 22121190 -160294052 - AluSc SINE Alu -13 296 1 2047 123 0 0 chr6 22121196 22121472 -160293770 - AluSx SINE Alu -19 293 18 383 286 0 0 chr6 22121990 22122074 -160293168 + MIR3 SINE MIR 73 156 -52 22 35 0 0 chr6 22122371 22122400 -160292842 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr6 22126230 22126255 -160288987 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr6 22127697 22127720 -160287522 + AT_rich Low_complexity Low_complexity 1 23 0 309 333 252 0 chr6 22128258 22128393 -160286849 + L2 LINE L2 3102 3270 -2 1161 207 61 52 chr6 22128959 22129288 -160285954 - L1ME2 LINE L1 0 6164 5833 201 238 175 0 chr6 22129413 22129476 -160285766 - MIR SINE MIR -6 256 183 1987 122 3 7 chr6 22129780 22130066 -160285176 - AluSx SINE Alu -26 286 2 686 267 62 50 chr6 22130260 22130500 -160284742 - MIR SINE MIR -7 255 13 2252 79 4 0 chr6 22131584 22131861 -160283381 - AluSp SINE Alu -19 294 17 22 56 0 0 chr6 22132293 22132329 -160282913 + AT_rich Low_complexity Low_complexity 1 36 0 224 290 0 0 chr6 22132646 22132708 -160282534 - MIR SINE MIR -1 261 200 29 0 0 0 chr6 22134698 22134727 -160280515 + AT_rich Low_complexity Low_complexity 1 29 0 2799 256 126 46 chr6 22135578 22135842 -160279400 + L2 LINE L2 1421 1662 -1652 2480 44 17 3 chr6 22135842 22136140 -160279102 - AluY SINE Alu -9 302 1 2799 256 126 46 chr6 22136140 22137099 -160278143 + L2 LINE L2 1662 2742 -572 778 153 68 62 chr6 22137100 22137142 -160278100 + MER3 DNA MER1_type 1 41 -121 2206 103 3 7 chr6 22137142 22137443 -160277799 + AluSx SINE Alu 1 300 -12 778 153 68 62 chr6 22137443 22137577 -160277665 + MER3 DNA MER1_type 41 131 -31 414 232 195 60 chr6 22137577 22137762 -160277480 + L2 LINE L2 2768 2977 -337 2336 101 0 0 chr6 22137767 22138075 -160277167 - AluSq SINE Alu -5 308 1 1867 157 0 0 chr6 22138239 22138542 -160276700 + AluJo SINE Alu 1 303 0 1691 170 3 7 chr6 22138602 22138909 -160276333 + AluJo SINE Alu 1 306 0 588 297 68 40 chr6 22140672 22140894 -160274348 + MIR SINE MIR 16 243 -19 295 310 109 22 chr6 22140937 22141121 -160274121 + MIR SINE MIR 48 247 -15 31633 102 13 58 chr6 22141140 22143257 -160271985 - L1PA7 LINE L1 0 6154 3942 2040 134 3 3 chr6 22143257 22143555 -160271687 - AluSg SINE Alu -12 298 1 31633 102 13 58 chr6 22143555 22147896 -160267346 - L1PA7 LINE L1 -2212 3942 2 2287 97 0 0 chr6 22147906 22148206 -160267036 - AluY SINE Alu -1 310 11 2097 142 0 0 chr6 22148207 22148503 -160266739 - AluSx SINE Alu -16 296 1 26 30 0 0 chr6 22149641 22149674 -160265568 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 22149794 22149828 -160265414 + AT_rich Low_complexity Low_complexity 1 34 0 237 65 0 0 chr6 22151546 22151577 -160263665 + (TA)n Simple_repeat Simple_repeat 2 32 0 269 347 95 7 chr6 22152475 22152622 -160262620 - MIR3 SINE MIR -3 205 46 508 347 23 12 chr6 22152802 22153046 -160262196 - MIR SINE MIR 0 262 14 180 375 50 19 chr6 22153451 22153611 -160261631 - L3 LINE CR1 -1410 167 3 1998 303 31 11 chr6 22153902 22154556 -160260686 + ERVL LTR ERVL 3230 3896 -1868 1449 82 0 0 chr6 22154557 22154741 -160260501 - AluSg/x SINE Alu -4 308 125 4651 277 34 12 chr6 22154742 22156105 -160259137 + ERVL LTR ERVL 3889 5281 -483 2039 234 96 12 chr6 22156107 22156688 -160258554 - L1MEc LINE L1 -5353 1043 414 1011 254 51 14 chr6 22156695 22156970 -160258272 - L1MEc LINE L1 -6030 366 82 406 309 56 5 chr6 22157655 22157856 -160257386 - MIR SINE MIR -13 249 33 2306 110 7 0 chr6 22158474 22158783 -160256459 - AluSx SINE Alu -1 311 1 563 168 42 18 chr6 22160005 22160172 -160255070 + CT-rich Low_complexity Low_complexity 4 174 0 2044 126 0 0 chr6 22160172 22160449 -160254793 - AluSx SINE Alu 0 312 36 5063 86 8 3 chr6 22160564 22161271 -160253971 - L1PA13 LINE L1 -2 6161 5451 217 244 0 0 chr6 22161409 22161454 -160253788 + CT-rich Low_complexity Low_complexity 2 46 0 517 158 24 0 chr6 22161682 22161764 -160253478 - FRAM/FAM SINE Alu -94 82 1 521 300 70 26 chr6 22161767 22162150 -160253092 - HAL1 LINE L1 -910 1597 1198 342 111 0 0 chr6 22162155 22162200 -160253042 - AluS SINE Alu -239 64 20 6306 132 24 7 chr6 22162404 22163635 -160251607 - L1MA4A LINE L1 -11 6292 5048 495 0 0 0 chr6 22163779 22163834 -160251408 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 205 0 0 chr6 22163854 22163893 -160251349 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2285 125 0 0 chr6 22164051 22164363 -160250879 - AluSx SINE Alu 0 312 1 967 256 97 44 chr6 22164457 22164910 -160250332 - L1MC/D LINE L1 -2024 5784 5308 314 323 48 26 chr6 22165078 22165267 -160249975 - L1MA4A LINE L1 -1071 5075 4883 302 265 128 15 chr6 22165352 22165556 -160249686 - L1MC5 LINE L1 -48 7913 7687 9916 20 0 0 chr6 22165569 22167497 -160247745 - L1PA2 LINE L1 -2 6153 4226 1705 164 34 10 chr6 22167510 22167628 -160247614 + AluJb SINE Alu 1 115 -197 387 0 0 0 chr6 22167628 22167671 -160247571 + (CA)n Simple_repeat Simple_repeat 1 43 0 1705 164 34 10 chr6 22167671 22167844 -160247398 + AluJb SINE Alu 115 299 -13 6908 64 11 0 chr6 22168208 22169305 -160245937 - L1PA6 LINE L1 -4 6150 5051 1924 163 0 0 chr6 22169465 22169765 -160245477 - AluJb SINE Alu -10 302 3 1074 196 78 4 chr6 22170047 22170302 -160244940 + L1MA8 LINE L1 6016 6289 -2 604 311 58 0 chr6 22171165 22171381 -160243861 - MIR SINE MIR -12 250 19 1325 144 73 33 chr6 22171537 22171839 -160243403 - L1MC2 LINE L1 -11 7746 6138 4347 154 62 34 chr6 22171971 22172881 -160242361 - L1MC3 LINE L1 -331 7454 6520 255 276 41 87 chr6 22172950 22173146 -160242096 - HAL1b LINE L1 -610 738 552 308 29 0 0 chr6 22173480 22173515 -160241727 - U2 snRNA snRNA -153 35 1 202 184 53 0 chr6 22173638 22173676 -160241566 - MIR3 SINE MIR -46 162 123 777 255 100 4 chr6 22174549 22174780 -160240462 + MIR SINE MIR 6 258 -4 228 178 22 0 chr6 22177142 22177187 -160238055 + L2 LINE L2 3267 3312 -1 248 237 0 17 chr6 22177370 22177429 -160237813 - MLT1L LTR MaLR -12 603 546 373 284 49 66 chr6 22177495 22177738 -160237504 - MLT1J LTR MaLR -169 342 104 2241 251 31 33 chr6 22178263 22179114 -160236128 - L1M4 LINE L1 -1372 4774 3926 1930 195 21 12 chr6 22179656 22180281 -160234961 - L1MC4 LINE L1 -95 7713 7155 1960 123 3 48 chr6 22180642 22180952 -160234290 - AluSx SINE Alu -11 301 6 405 277 71 49 chr6 22181525 22181709 -160233533 + MIR SINE MIR 23 210 -52 309 327 75 28 chr6 22182112 22182326 -160232916 + L2 LINE L2 2302 2525 -789 239 264 33 22 chr6 22182685 22182776 -160232466 - L1ME4a LINE L1 -94 6027 5936 2163 186 50 0 chr6 22182852 22183249 -160231993 - MER47B DNA MER2_type 0 418 2 202 222 22 0 chr6 22183461 22183506 -160231736 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 285 279 41 54 chr6 22183632 22183779 -160231463 - L2 LINE L2 -183 3089 2945 319 191 0 15 chr6 22183841 22183909 -160231333 - L1MB8 LINE L1 0 6178 6112 3937 173 36 8 chr6 22183916 22184690 -160230552 - L1MB8 LINE L1 -111 6067 5272 438 269 64 95 chr6 22185293 22185484 -160229758 - L2 LINE L2 -665 2649 2468 2355 103 3 0 chr6 22185484 22185794 -160229448 + AluSq SINE Alu 1 311 -2 438 269 64 95 chr6 22185794 22185885 -160229357 - L2 LINE L2 -846 2468 2376 1145 256 63 94 chr6 22185892 22186221 -160229021 + LTR33A LTR ERVL 1 339 -184 1246 132 66 31 chr6 22186221 22186449 -160228793 - MER46A DNA MER2_type 0 236 1 1145 256 63 94 chr6 22186449 22186509 -160228733 + LTR33A LTR ERVL 339 399 -124 1333 228 67 92 chr6 22186509 22187062 -160228180 - MER34 LTR ERV1 -3 539 1 1145 256 63 94 chr6 22187062 22187211 -160228031 + LTR33A LTR ERVL 399 523 0 362 271 207 55 chr6 22187211 22187544 -160227698 - L2 LINE L2 -941 2373 2092 2432 90 3 0 chr6 22187544 22187855 -160227387 + AluSx SINE Alu 1 312 0 362 271 207 55 chr6 22187855 22188067 -160227175 - L2 LINE L2 -1222 2092 1745 2278 93 3 0 chr6 22188069 22188370 -160226872 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr6 22188429 22188450 -160226792 + AT_rich Low_complexity Low_complexity 1 21 0 1177 273 159 28 chr6 22188504 22189216 -160226026 - L1MC4a LINE L1 -1742 6066 5262 2094 91 0 69 chr6 22189401 22189720 -160225522 - AluSc SINE Alu -12 297 1 2327 92 0 0 chr6 22190449 22190752 -160224490 - AluSg SINE Alu -2 308 6 661 293 83 18 chr6 22191526 22191755 -160223487 + MIR SINE MIR 18 261 -1 436 303 82 50 chr6 22192299 22192874 -160222368 - L1MC4a LINE L1 -1802 6006 5414 392 316 114 0 chr6 22192895 22193123 -160222119 + L1MC/D LINE L1 4975 5228 -918 1030 281 37 51 chr6 22193185 22193620 -160221622 + L1MC/D LINE L1 5281 5709 -2099 301 136 22 6 chr6 22193620 22193734 -160221508 + Alu SINE Alu 240 329 0 22 0 0 0 chr6 22194163 22194185 -160221057 + AT_rich Low_complexity Low_complexity 1 22 0 1887 161 0 26 chr6 22194611 22194921 -160220321 - AluSx SINE Alu -10 302 1 39 0 0 0 chr6 22194924 22194963 -160220279 + AT_rich Low_complexity Low_complexity 1 39 0 371 266 80 26 chr6 22194978 22195091 -160220151 + L2 LINE L2 3193 3311 -2 2281 68 41 10 chr6 22195184 22195478 -160219764 + AluY SINE Alu 1 303 -8 5008 113 46 75 chr6 22195623 22196238 -160219004 - Tigger3b DNA MER2_type -1797 1231 599 2131 100 0 4 chr6 22196238 22196558 -160218684 + AluSc SINE Alu 1 319 0 5008 113 46 75 chr6 22196558 22196837 -160218405 - Tigger3b DNA MER2_type -2429 599 365 2338 108 0 0 chr6 22196837 22197143 -160218099 - AluSg SINE Alu -4 306 1 5008 113 46 75 chr6 22197143 22197233 -160218009 - Tigger3b DNA MER2_type -2663 365 274 592 194 0 0 chr6 22197231 22197329 -160217913 - Tigger3b DNA MER2_type -1129 102 5 * 2289 91 0 3 chr6 22197537 22197833 -160217409 - AluSq SINE Alu -18 295 1 391 268 0 31 chr6 22197963 22198060 -160217182 - L2 LINE L2 -3 3269 3176 331 210 37 105 chr6 22198519 22198681 -160216561 - L2 LINE L2 -577 2737 2587 1304 86 0 0 chr6 22198714 22198877 -160216365 + AluY SINE Alu 133 295 -16 2084 111 0 17 chr6 22198917 22199214 -160216028 - AluSg1 SINE Alu -15 294 3 11710 115 9 1 chr6 22200348 22202911 -160212331 - L1PA10 LINE L1 -2 6166 3581 232 280 129 11 chr6 22203592 22203685 -160211557 - L1ME3A LINE L1 -104 6066 5963 898 285 110 10 chr6 22203757 22204238 -160211004 - L1ME3A LINE L1 -222 5948 5420 2081 114 0 29 chr6 22204238 22204407 -160210835 - AluSx SINE Alu -10 302 144 2215 98 7 0 chr6 22204407 22204694 -160210548 - AluSc SINE Alu -15 294 6 2081 114 0 29 chr6 22204694 22204830 -160210412 - AluSx SINE Alu -168 144 6 1071 90 0 0 chr6 22204838 22204971 -160210271 - AluSq/x SINE Alu -179 133 1 1160 254 108 43 chr6 22204975 22205815 -160209427 - L1ME3A LINE L1 -769 5377 4529 2050 154 3 26 chr6 22206213 22206558 -160208684 + MER1B DNA MER1_type 1 337 0 642 255 56 68 chr6 22206723 22206974 -160208268 - MIR SINE MIR -14 248 1 194 368 47 0 chr6 22206979 22207085 -160208157 - L2 LINE L2 -999 2315 2205 1636 164 0 63 chr6 22209606 22209923 -160205319 - AluJb SINE Alu -15 297 1 28 0 0 0 chr6 22209926 22209954 -160205288 + AT_rich Low_complexity Low_complexity 1 28 0 387 307 14 61 chr6 22210386 22210598 -160204644 + L2 LINE L2 2205 2406 -908 250 314 95 9 chr6 22211844 22211949 -160203293 + L2 LINE L2 3200 3313 0 205 282 141 12 chr6 22213389 22213474 -160201768 + L2 LINE L2 3137 3232 -40 386 287 25 102 chr6 22213800 22214114 -160201128 - MLT1J LTR MaLR -196 315 26 1342 259 58 22 chr6 22215955 22216403 -160198839 - MER20B DNA MER1_type 0 783 320 575 215 56 28 chr6 22216422 22216566 -160198676 - MER6 DNA MER2_type -1 864 -4 * 743 266 39 0 chr6 22216566 22216766 -160198476 - MER20B DNA MER1_type -513 270 63 353 329 79 27 chr6 22216922 22217322 -160197920 + L1MC/D LINE L1 5307 5725 -532 397 353 111 0 chr6 22217998 22218151 -160197091 - L2 LINE L2 -1 3271 3102 483 205 6 121 chr6 22218284 22218450 -160196792 - MLT1L LTR MaLR -59 556 410 405 245 0 0 chr6 22218557 22218659 -160196583 - L1MC4 LINE L1 -7 8035 7934 194 174 22 0 chr6 22218858 22218904 -160196338 + CT-rich Low_complexity Low_complexity 2 48 0 944 201 0 0 chr6 22219111 22219280 -160195962 - FAM SINE Alu -2 173 5 4048 198 71 145 chr6 22219349 22221347 -160193895 - L1MC4a LINE L1 -1 7807 5959 535 151 122 22 chr6 22221355 22221494 -160193748 - L1MC4a LINE L1 -719 7089 6937 1566 258 78 13 chr6 22221532 22222137 -160193105 - L1MC4a LINE L1 -1852 5956 5313 245 272 76 0 chr6 22222375 22222467 -160192775 - L1MC4a LINE L1 -1131 5015 4917 779 193 0 35 chr6 22222501 22222672 -160192570 - FAM SINE Alu -1 48 1 879 218 0 0 chr6 22222525 22222690 -160192552 - FAM SINE Alu -9 166 2 247 273 67 13 chr6 22222698 22222848 -160192394 - L1MC4a LINE L1 -1226 4920 4763 305 43 43 0 chr6 22222913 22222959 -160192283 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 805 185 11 0 chr6 22222959 22223137 -160192105 + CT-rich Low_complexity Low_complexity 1 180 0 1937 144 23 10 chr6 22223137 22223443 -160191799 - AluSx SINE Alu -2 310 1 2285 99 0 0 chr6 22223571 22223865 -160191377 - AluSx SINE Alu -18 294 1 26 0 0 0 chr6 22223867 22223893 -160191349 + AT_rich Low_complexity Low_complexity 1 26 0 1666 178 33 21 chr6 22224024 22224341 -160190901 + MER2 DNA MER2_type 1 324 -21 2282 117 19 27 chr6 22224341 22224708 -160190534 + THE1B LTR MaLR 1 364 0 1666 178 33 21 chr6 22224708 22224721 -160190521 + MER2 DNA MER2_type 324 335 -10 496 297 57 64 chr6 22224821 22225226 -160190016 - L1MC4a LINE L1 -1788 4358 3952 2546 134 45 14 chr6 22225226 22225672 -160189570 - L1MA5 LINE L1 0 6300 5841 496 297 57 64 chr6 22225672 22226257 -160188985 - L1MC4a LINE L1 -2194 3952 3375 6319 139 67 13 chr6 22226260 22227175 -160188067 + Tigger3b DNA MER2_type 1 994 -2034 2253 101 3 0 chr6 22227175 22227512 -160187730 + AluY SINE Alu 1 311 0 6319 139 67 13 chr6 22227512 22227764 -160187478 + Tigger3b DNA MER2_type 994 1231 0 607 250 199 56 chr6 22227813 22227859 -160187383 - L1MC4a LINE L1 -2974 3172 3134 2032 130 3 0 chr6 22227859 22228158 -160187084 - AluSx SINE Alu -12 300 1 607 250 199 56 chr6 22228158 22228212 -160187030 - L1MC4a LINE L1 -3012 3134 3089 1960 134 10 0 chr6 22228212 22228503 -160186739 - AluSq SINE Alu -18 295 2 607 250 199 56 chr6 22228503 22228849 -160186393 - L1MC4a LINE L1 -3057 3089 2661 796 154 44 34 chr6 22229293 22229491 -160185751 + MER6 DNA MER2_type -65 865 0 31 0 0 0 chr6 22229533 22229564 -160185678 + AT_rich Low_complexity Low_complexity 1 31 0 1457 178 6 60 chr6 22229689 22230003 -160185239 - AluJo SINE Alu -13 299 3 528 302 118 30 chr6 22230241 22230714 -160184528 - HAL1b LINE L1 -597 751 237 26 30 0 0 chr6 22230739 22230772 -160184470 + AT_rich Low_complexity Low_complexity 1 33 0 1968 151 3 7 chr6 22230849 22231153 -160184089 - AluSx SINE Alu -7 305 3 23 33 0 0 chr6 22231168 22231198 -160184044 + AT_rich Low_complexity Low_complexity 1 30 0 202 118 0 29 chr6 22231267 22231301 -160183941 + L3b LINE CR1 1369 1401 -182 182 262 49 16 chr6 22232220 22232281 -160182961 - L2 LINE L2 -13 3300 3238 272 301 27 33 chr6 22232313 22232496 -160182746 + LTR41 LTR ERVL 1 182 -591 2007 175 11 11 chr6 22232605 22232970 -160182272 - MLT1A1 LTR MaLR 0 365 1 1896 141 171 11 chr6 22233121 22233490 -160181752 - MSTA LTR MaLR 0 428 1 182 353 29 0 chr6 22233550 22233618 -160181624 + L2 LINE L2 3095 3164 -108 1026 170 12 0 chr6 22233741 22233912 -160181330 - FAM SINE Alu 0 175 3 258 328 67 37 chr6 22233958 22234092 -160181150 - MIR3 SINE MIR -49 159 22 5869 185 34 82 chr6 22234331 22234948 -160180294 - L1MC1 LINE L1 0 6613 5968 2131 132 0 0 chr6 22234948 22235244 -160179998 + AluSx SINE Alu 1 296 -16 5869 185 34 82 chr6 22235244 22236505 -160178737 - L1MC1 LINE L1 -645 5968 4647 852 233 0 12 chr6 22236505 22236677 -160178565 - AluJo SINE Alu -142 170 1 5869 185 34 82 chr6 22236677 22237010 -160178232 - L1MC1 LINE L1 -1966 4647 4299 3249 112 85 0 chr6 22237010 22237493 -160177749 + MER1A DNA MER1_type 4 527 0 5869 185 34 82 chr6 22237493 22238238 -160177004 - L1MC1 LINE L1 -2314 4299 3651 * 8161 169 83 34 chr6 22238235 22238330 -160176912 - L1MC1 LINE L1 -4458 1968 1879 1561 169 67 0 chr6 22238330 22238614 -160176628 - AluJb SINE Alu -9 303 1 8161 169 83 34 chr6 22238614 22240377 -160174865 - L1MC1 LINE L1 -4547 1879 20 369 295 48 80 chr6 22240981 22241459 -160173783 - L1ME LINE L1 -299 5822 5360 311 195 27 60 chr6 22242628 22242777 -160172465 + Charlie7 DNA MER1_type 2429 2572 -40 2494 67 0 13 chr6 22243633 22243946 -160171296 + AluY SINE Alu 1 309 -2 1252 147 0 206 chr6 22244664 22244831 -160170411 - AluSx SINE Alu -15 297 97 453 36 0 0 chr6 22244831 22244886 -160170356 + (TG)n Simple_repeat Simple_repeat 2 56 0 1252 147 0 206 chr6 22244886 22244962 -160170280 - AluSx SINE Alu -215 97 154 339 25 0 0 chr6 22244962 22245002 -160170240 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1252 147 0 206 chr6 22245002 22245131 -160170111 - AluSx SINE Alu -157 155 1 1568 182 173 3 chr6 22245515 22245884 -160169358 + MSTB1 LTR MaLR 1 432 0 1308 156 3 67 chr6 22246526 22246809 -160168433 - L1MB3 LINE L1 0 6183 5919 24 53 0 0 chr6 22247395 22247433 -160167809 + AT_rich Low_complexity Low_complexity 1 38 0 2050 192 63 11 chr6 22249026 22249484 -160165758 - L1MC3 LINE L1 -15 7770 7289 1365 92 0 0 chr6 22250996 22251170 -160164072 + AluSp SINE Alu 136 309 -4 459 256 139 37 chr6 22252080 22252295 -160162947 + MER102a DNA MER1_type 93 329 -1 4047 124 50 32 chr6 22252912 22253668 -160161574 - LTR1 LTR ERV1 0 785 16 185 348 0 14 chr6 22253703 22253772 -160161470 + L2 LINE L2 417 484 -2830 1042 242 0 5 chr6 22253986 22254209 -160161033 + MER58A DNA MER1_type 3 224 0 313 258 161 0 chr6 22254822 22254946 -160160296 - L2 LINE L2 -5 3308 3165 1091 279 141 18 chr6 22254977 22255368 -160159874 - L2 LINE L2 -42 3271 2833 253 268 0 0 chr6 22258340 22258396 -160156846 + MER94 DNA DNA 3 58 -76 274 241 0 0 chr6 22258539 22258597 -160156645 + L2 LINE L2 3256 3313 0 454 278 56 0 chr6 22259794 22259920 -160155322 + L2 LINE L2 3161 3293 -20 1043 159 169 0 chr6 22260104 22260305 -160154937 + MER46A DNA MER2_type 2 236 0 414 284 66 27 chr6 22260357 22260540 -160154702 - MLT1L LTR MaLR -2 613 424 1629 151 0 0 chr6 22261102 22261347 -160153895 + Tigger3(Golem) DNA MER2_type 2794 3038 0 213 386 105 18 chr6 22261647 22261761 -160153481 + MIR SINE MIR 20 143 -65 542 333 122 17 chr6 22262364 22262782 -160152460 - MLT1L LTR MaLR -6 609 148 239 324 0 14 chr6 22263081 22263152 -160152090 - L2 LINE L2 -218 3054 2985 270 167 0 0 chr6 22263293 22263353 -160151889 + A-rich Low_complexity Low_complexity 4 63 0 2093 104 14 3 chr6 22263441 22263728 -160151514 - AluSg SINE Alu -20 290 1 38 0 0 0 chr6 22265050 22265088 -160150154 + AT_rich Low_complexity Low_complexity 1 38 0 1432 159 0 4 chr6 22265167 22265393 -160149849 - AluJo SINE Alu -2 310 86 3187 200 52 42 chr6 22265721 22266537 -160148705 - L1MA9 LINE L1 -25 6287 5464 21 36 0 0 chr6 22266550 22266578 -160148664 + AT_rich Low_complexity Low_complexity 1 28 0 399 345 87 31 chr6 22266860 22267182 -160148060 - L2 LINE L2 -7 3306 2967 2112 256 119 62 chr6 22267200 22268411 -160146831 - L2 LINE L2 -690 2624 1345 27 0 0 0 chr6 22268412 22268439 -160146803 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr6 22269590 22269625 -160145617 + AT_rich Low_complexity Low_complexity 1 35 0 411 342 58 21 chr6 22269724 22269914 -160145328 - MIR3 SINE MIR -9 199 3 25 51 0 0 chr6 22270381 22270420 -160144822 + AT_rich Low_complexity Low_complexity 1 39 0 296 265 49 68 chr6 22270465 22270627 -160144615 - L1ME3A LINE L1 -50 6120 5962 397 211 38 45 chr6 22270715 22270848 -160144394 - L1MC5 LINE L1 -431 7530 7399 3296 151 101 82 chr6 22271070 22271328 -160143914 - L1MA4A LINE L1 -24 6279 6027 1791 119 32 0 chr6 22271328 22271581 -160143661 - AluSx SINE Alu -45 267 7 3296 151 101 82 chr6 22271581 22271750 -160143492 - L1MA4A LINE L1 -276 6027 5863 3323 63 0 0 chr6 22271750 22272176 -160143066 - L1PA5 LINE L1 0 6154 5729 3296 151 101 82 chr6 22272176 22272514 -160142728 - L1MA4A LINE L1 -440 5863 5507 2352 112 0 0 chr6 22272514 22272819 -160142423 - AluSg SINE Alu -5 305 1 3296 151 101 82 chr6 22272819 22272872 -160142370 - L1MA4A LINE L1 -796 5507 5456 425 245 159 0 chr6 22273362 22273513 -160141729 + LTR28 LTR ERV1 4 178 -842 370 198 12 0 chr6 22273529 22273610 -160141632 + LTR1 LTR ERV1 109 190 -595 * 2020 178 137 24 chr6 22273579 22274039 -160141203 + LTR28 LTR ERV1 308 819 -201 1657 177 38 0 chr6 22274038 22274354 -160140888 + LTR28 LTR ERV1 693 1020 0 * 1989 145 0 16 chr6 22274722 22275026 -160140216 - AluSx SINE Alu -13 299 1 1213 201 76 8 chr6 22275223 22275506 -160139736 + AluSx SINE Alu 1 301 0 2364 101 3 0 chr6 22276291 22276599 -160138643 + AluSp SINE Alu 1 309 -4 1798 186 58 41 chr6 22276606 22277321 -160137921 + MER4E LTR ERV1 1 779 0 3683 150 46 11 chr6 22277388 22278036 -160137206 - LTR51 LTR ERV1 0 671 1 579 246 83 76 chr6 22278036 22278584 -160136658 - MER34C LTR ERV1 -6 536 2 399 333 0 0 chr6 22279412 22279520 -160135722 + MIR3 SINE MIR 87 194 -14 216 135 0 0 chr6 22279635 22279672 -160135570 + (T)n Simple_repeat Simple_repeat 1 37 0 337 269 13 0 chr6 22279806 22279884 -160135358 + L3 LINE CR1 1426 1504 -73 939 233 83 0 chr6 22280349 22280577 -160134665 - MIR SINE MIR -14 248 2 245 330 20 30 chr6 22280680 22280780 -160134462 - L2 LINE L2 -32 3281 3183 1340 167 84 43 chr6 22280826 22281125 -160134117 + AluSx SINE Alu 1 311 -1 475 97 29 29 chr6 22281172 22281275 -160133967 + GA-rich Low_complexity Low_complexity 2 104 0 1248 293 101 38 chr6 22281275 22281351 -160133891 - L2 LINE L2 -124 3189 3119 2383 98 3 0 chr6 22281351 22281657 -160133585 + AluSx SINE Alu 1 307 -5 1248 293 101 38 chr6 22281657 22282316 -160132926 - L2 LINE L2 -194 3119 2403 25 31 0 0 chr6 22282813 22282845 -160132397 + AT_rich Low_complexity Low_complexity 1 32 0 882 196 0 0 chr6 22282845 22282998 -160132244 - FRAM SINE Alu -13 153 1 186 189 0 0 chr6 22283014 22283051 -160132191 + T-rich Low_complexity Low_complexity 1 37 0 2080 124 3 34 chr6 22283053 22283375 -160131867 - AluSx SINE Alu 0 312 1 1352 152 16 4 chr6 22284199 22284442 -160130800 - MER101 LTR ERV1 0 474 229 403 315 11 67 chr6 22284474 22284652 -160130590 + MIR3 SINE MIR 36 203 -5 2282 128 0 0 chr6 22284655 22284967 -160130275 + AluSx SINE Alu 1 312 0 24 32 0 0 chr6 22285112 22285143 -160130099 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 22285498 22285528 -160129714 + AT_rich Low_complexity Low_complexity 1 30 0 456 168 11 42 chr6 22285555 22285650 -160129592 - AluJ/FLAM SINE Alu -215 97 6 2250 105 7 7 chr6 22285652 22285958 -160129284 - AluSx SINE Alu -6 306 1 420 57 0 71 chr6 22285980 22286033 -160129209 - L1PA16 LINE L1 -9 6157 6109 2171 120 62 11 chr6 22286033 22286390 -160128852 - THE1C LTR MaLR 0 375 1 420 57 0 71 chr6 22286390 22286406 -160128836 - L1PA16 LINE L1 -57 6109 6093 904 181 62 14 chr6 22286948 22287158 -160128084 + MER58A DNA MER1_type 4 223 -1 2313 71 0 7 chr6 22287277 22287574 -160127668 + AluY SINE Alu 1 295 -16 1977 133 0 32 chr6 22289274 22289583 -160125659 - AluJo SINE Alu -9 303 5 287 299 13 0 chr6 22290997 22291074 -160124168 + L2 LINE L2 3235 3312 -1 5588 121 9 4 chr6 22292107 22293083 -160122159 - L1PA14 LINE L1 0 6161 5170 21 57 0 0 chr6 22293465 22293500 -160121742 + AT_rich Low_complexity Low_complexity 1 35 0 414 215 0 139 chr6 22295149 22295293 -160119949 - L2 LINE L2 0 3313 3190 341 227 0 0 chr6 22296408 22296474 -160118768 + MIR SINE MIR 3 68 -194 885 128 47 14 chr6 22296485 22296633 -160118609 + MER30 DNA MER1_type 78 230 0 4432 160 44 28 chr6 22297532 22298833 -160116409 - L1MA9 LINE L1 -38 6274 4953 738 220 28 0 chr6 22298821 22298998 -160116244 + L1 LINE L1 4576 4757 -1389 * 1265 173 42 137 chr6 22299003 22299114 -160116128 + AluJo SINE Alu 9 129 -183 228 111 0 0 chr6 22299114 22299150 -160116092 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1265 173 42 137 chr6 22299150 22299374 -160115868 + AluJo SINE Alu 129 312 0 855 112 25 87 chr6 22299381 22299577 -160115665 + L1 LINE L1 4747 4930 -1216 372 164 0 0 chr6 22299733 22299800 -160115442 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 297 280 60 99 chr6 22299994 22300226 -160115016 + L2 LINE L2 2738 2960 -354 2446 90 0 0 chr6 22300324 22300635 -160114607 - AluY SINE Alu 0 311 1 913 158 0 20 chr6 22300648 22300794 -160114448 - FLAM_C SINE Alu 0 143 1 183 317 59 0 chr6 22300805 22300906 -160114336 + L2 LINE L2 3119 3225 -88 349 206 14 0 chr6 22300907 22300980 -160114262 - AluJo SINE Alu -6 296 223 857 139 42 7 chr6 22300980 22301124 -160114118 - AluJo SINE Alu -128 184 36 314 258 65 0 chr6 22301124 22301217 -160114025 + L2 LINE L2 3215 3313 0 322 297 11 97 chr6 22301418 22301470 -160113772 + MIR SINE MIR 103 158 -104 2386 79 33 0 chr6 22301470 22301773 -160113469 + AluSq SINE Alu 1 313 0 322 297 11 97 chr6 22301773 22301895 -160113347 + MIR SINE MIR 158 262 0 255 235 0 0 chr6 22302071 22302122 -160113120 - MLT1B LTR MaLR 0 390 340 717 194 167 6 chr6 22302142 22302322 -160112920 - MER3 DNA MER1_type 0 209 1 186 143 0 0 chr6 22303274 22303309 -160111933 + (CA)n Simple_repeat Simple_repeat 1 35 0 1395 198 128 12 chr6 22303317 22303747 -160111495 - L1MC4 LINE L1 0 8042 7563 3577 179 64 34 chr6 22303787 22304122 -160111120 - L1MB7 LINE L1 -7 6177 5854 1540 174 92 0 chr6 22304122 22304438 -160110804 + MER7A DNA MER2_type 4 346 0 3577 179 64 34 chr6 22304438 22304742 -160110500 - L1MB7 LINE L1 -330 5854 5561 312 27 0 0 chr6 22304742 22304779 -160110463 + (TG)n Simple_repeat Simple_repeat 2 38 0 1731 183 0 11 chr6 22304786 22305071 -160110171 - AluJo SINE Alu -30 282 1 3577 179 64 34 chr6 22305071 22305127 -160110115 - L1MB7 LINE L1 -628 5556 5503 832 168 69 0 chr6 22305127 22305300 -160109942 - L1MB3 LINE L1 0 6183 5999 3577 179 64 34 chr6 22305300 22305725 -160109517 - L1MB7 LINE L1 -681 5503 5018 202 367 102 49 chr6 22305934 22307310 -160107932 + L2 LINE L2 589 2037 -1277 1220 39 0 7 chr6 22307593 22307748 -160107494 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 1862 139 7 11 chr6 22307750 22308023 -160107219 - AluSx SINE Alu -40 272 1 193 329 0 29 chr6 22308866 22308936 -160106306 + L2 LINE L2 3226 3293 -20 537 241 167 0 chr6 22309650 22309681 -160105561 + AluJo SINE Alu 9 33 -279 225 94 0 0 chr6 22309681 22309713 -160105529 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 537 241 167 0 chr6 22309713 22309843 -160105399 + AluJo SINE Alu 33 197 -115 2425 85 7 0 chr6 22360411 22360739 -160054503 - AluSc SINE Alu 0 330 1 1227 231 21 3 chr6 22361292 22361574 -160053668 - MLT1A1 LTR MaLR 0 365 79 243 217 69 74 chr6 22361996 22362171 -160053071 + L1ME4a LINE L1 5932 6105 -16 30 93 0 0 chr6 22362182 22362268 -160052974 + AT_rich Low_complexity Low_complexity 1 86 0 27 62 0 37 chr6 22363084 22363165 -160052077 + AT_rich Low_complexity Low_complexity 1 78 0 232 382 24 16 chr6 22363230 22363353 -160051889 - MIR3 SINE MIR -13 195 72 2229 86 10 7 chr6 22363401 22363704 -160051538 - AluSc SINE Alu -5 304 1 2225 113 3 7 chr6 22363980 22364290 -160050952 + AluSq SINE Alu 1 309 -4 2207 221 76 39 chr6 22364889 22365593 -160049649 - L1MC4 LINE L1 -5 8037 5612 1199 196 93 36 chr6 22365595 22365927 -160049315 + MLT2D LTR ERVL 1 351 -63 229 114 0 0 chr6 22365981 22366016 -160049226 + MLT2D LTR ERVL 363 397 0 247 229 0 0 chr6 22366016 22366064 -160049178 + L1M4 LINE L1 4062 4109 -2037 663 233 68 79 chr6 22366639 22366931 -160048311 - L2 LINE L2 0 3313 3025 2273 91 0 3 chr6 22366956 22367254 -160047988 - AluY SINE Alu -14 297 1 1626 184 0 34 chr6 22367259 22367553 -160047689 - AluJo SINE Alu -20 292 9 1586 92 61 0 chr6 22367861 22368089 -160047153 - L1PB1 LINE L1 -1 6150 5909 816 209 0 0 chr6 22368124 22368282 -160046960 + MLT1A1 LTR MaLR 1 158 -207 1080 165 0 12 chr6 22368282 22368452 -160046790 + AluSc SINE Alu 112 279 -30 980 184 32 37 chr6 22368458 22368676 -160046566 + MLT1A1 LTR MaLR 144 360 -5 1464 78 289 14 chr6 22369722 22370006 -160045236 - L1PA8 LINE L1 0 6172 5811 463 304 100 33 chr6 22370047 22370317 -160044925 + LTR67 LTR ERVL 3 290 -267 230 268 14 14 chr6 22370427 22370498 -160044744 + LTR67 LTR ERVL 471 541 -16 2126 108 10 3 chr6 22371490 22371787 -160043455 + AluSc SINE Alu 1 299 -10 184 327 18 0 chr6 22371791 22371846 -160043396 - MIR SINE MIR -71 137 82 356 294 64 0 chr6 22373155 22373264 -160041978 - MIR SINE MIR -59 149 34 613 164 36 79 chr6 22373466 22373543 -160041699 + MER33 DNA MER1_type 1 69 -2516 2364 70 10 13 chr6 22373543 22373845 -160041397 - AluY SINE Alu -10 301 1 613 164 36 79 chr6 22373845 22373932 -160041310 + MER33 DNA MER1_type 69 158 -166 605 202 147 16 chr6 22373952 22374081 -160041161 + FRAM SINE Alu 1 146 -30 628 170 65 0 chr6 22374100 22374253 -160040989 + MER33 DNA MER1_type 162 324 0 23 78 0 0 chr6 22374452 22374503 -160040739 + AT_rich Low_complexity Low_complexity 1 51 0 428 225 21 99 chr6 22375428 22375619 -160039623 + L2 LINE L2 3138 3313 0 2293 218 63 18 chr6 22376215 22376900 -160038342 + L1MC4a LINE L1 6646 7361 -447 2012 102 11 14 chr6 22377026 22377311 -160037931 + AluSx SINE Alu 6 289 -23 461 228 59 0 chr6 22377323 22377424 -160037818 - MIR SINE MIR -74 188 82 492 229 0 8 chr6 22378725 22378847 -160036395 - L1ME3A LINE L1 -2 6168 6048 2266 76 0 27 chr6 22378854 22379155 -160036087 + AluY SINE Alu 1 293 -18 1771 151 4 0 chr6 22379229 22379494 -160035748 - AluSx SINE Alu -2 310 45 1002 278 188 16 chr6 22379631 22379774 -160035468 - L2 LINE L2 -571 2743 2626 432 0 0 0 chr6 22379774 22379822 -160035420 + (CA)n Simple_repeat Simple_repeat 1 48 0 1002 278 188 16 chr6 22379822 22380178 -160035064 - L2 LINE L2 -688 2626 2158 10506 160 31 35 chr6 22381268 22381717 -160033525 + L1M4c LINE L1 16 466 -5918 894 138 0 8 chr6 22381717 22381847 -160033395 + FLAM_C SINE Alu 1 129 -4 10506 160 31 35 chr6 22381847 22381971 -160033271 + L1M4c LINE L1 466 589 -5795 2396 98 3 0 chr6 22381971 22382278 -160032964 + AluSp SINE Alu 1 308 -5 10506 160 31 35 chr6 22382278 22383913 -160031329 + L1M4c LINE L1 589 2215 -4169 561 116 12 0 chr6 22383915 22384001 -160031241 - Tigger5 DNA MER2_type 0 2323 2237 229 184 0 0 chr6 22384011 22384049 -160031193 - Tigger5 DNA MER2_type -2268 55 18 311 203 29 14 chr6 22384056 22384125 -160031117 - Tigger5 DNA MER2_type -6 2317 2248 675 100 157 21 chr6 22384145 22384285 -160030957 + L1M4c LINE L1 2216 2374 -4010 1038 202 6 65 chr6 22384311 22384686 -160030556 + L1MB3 LINE L1 5820 6141 -42 1440 133 24 0 chr6 22384686 22384896 -160030346 + AluJb SINE Alu 83 297 -15 954 247 77 30 chr6 22385051 22385609 -160029633 - MLT2E LTR ERVL 0 628 1 31 58 0 0 chr6 22386017 22386069 -160029173 + AT_rich Low_complexity Low_complexity 1 52 0 315 192 103 0 chr6 22386309 22386387 -160028855 + MER53 DNA DNA 103 188 -1 1802 194 75 20 chr6 22386566 22387009 -160028233 + MLT1C LTR MaLR 1 467 0 356 325 105 53 chr6 22387021 22387249 -160027993 - MIR SINE MIR -2 260 21 266 57 0 0 chr6 22388989 22389024 -160026218 - MLT2C1 LTR ERVL 0 397 363 387 0 0 0 chr6 22389041 22389084 -160026158 + (CA)n Simple_repeat Simple_repeat 2 44 0 1291 186 137 25 chr6 22389084 22389406 -160025836 - MLT1E LTR MaLR -30 563 206 418 234 0 82 chr6 22389629 22389787 -160025455 + AluSg SINE Alu 9 153 -157 848 153 0 0 chr6 22390876 22391007 -160024235 - FLAM_C SINE Alu -2 131 1 3655 149 26 17 chr6 22391026 22391517 -160023725 + Tigger1 DNA MER2_type 1 501 -1917 1658 181 7 3 chr6 22391517 22391804 -160023438 + AluJb SINE Alu 1 288 -24 3655 149 26 17 chr6 22391804 22392002 -160023240 + Tigger1 DNA MER2_type 501 696 -1722 898 206 0 0 chr6 22392003 22392158 -160023084 + AluJb SINE Alu 134 288 -24 3481 99 23 2 chr6 22392158 22392682 -160022560 + Tigger1 DNA MER2_type 492 1026 -1392 2758 137 44 16 chr6 22392661 22393164 -160022078 + Tigger1 DNA MER2_type 1859 2375 -43 * 312 133 0 0 chr6 22394666 22394726 -160020516 + (TA)n Simple_repeat Simple_repeat 1 60 0 286 365 52 0 chr6 22396316 22396431 -160018811 - MIR3 SINE MIR -36 172 52 775 181 0 15 chr6 22396484 22396617 -160018625 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr6 22398040 22398061 -160017181 + AT_rich Low_complexity Low_complexity 1 21 0 616 277 38 50 chr6 22398442 22398533 -160016709 - MIR SINE MIR -26 236 145 2370 74 0 7 chr6 22398533 22398829 -160016413 - AluSc SINE Alu -15 294 1 616 277 38 50 chr6 22398829 22398975 -160016267 - MIR SINE MIR -117 145 2 248 255 117 32 chr6 22399495 22399589 -160015653 - L2 LINE L2 -1 3271 3170 195 289 214 38 chr6 22400080 22400239 -160015003 + MER5A DNA MER1_type 2 188 -1 243 283 183 52 chr6 22400638 22400829 -160014413 - MIR SINE MIR 0 262 47 1711 154 7 20 chr6 22402354 22402652 -160012590 + AluJb SINE Alu 6 299 -13 2102 123 14 0 chr6 22402686 22402979 -160012263 - AluSg SINE Alu -13 297 1 2014 151 0 3 chr6 22403217 22403515 -160011727 - AluSx SINE Alu -15 297 1 609 170 0 0 chr6 22403537 22403637 -160011605 - FLAM_C SINE Alu -25 118 19 2878 0 0 0 chr6 22404027 22404335 -160010907 - AluYa5 SINE Alu -3 308 1 413 315 21 13 chr6 22404783 22404862 -160010380 - L1MC4a LINE L1 -1 7807 7730 1929 151 13 10 chr6 22404862 22405173 -160010069 - AluJb SINE Alu 0 312 1 413 315 21 13 chr6 22405173 22405331 -160009911 - L1MC4a LINE L1 -78 7730 7568 378 325 8 8 chr6 22405673 22405799 -160009443 + MER5A DNA MER1_type 36 161 -28 360 164 0 0 chr6 22406738 22406805 -160008437 + (CA)n Simple_repeat Simple_repeat 2 68 0 338 269 17 42 chr6 22407286 22407405 -160007837 - L1MCa LINE L1 -4859 1681 1566 297 75 0 0 chr6 22407407 22407447 -160007795 + (A)n Simple_repeat Simple_repeat 1 40 0 266 215 93 19 chr6 22407459 22407566 -160007676 - L1MCa LINE L1 -4853 1687 1573 504 232 57 23 chr6 22407687 22407864 -160007378 - L1MCa LINE L1 -5354 1367 1185 463 229 101 9 chr6 22407894 22408003 -160007239 + FLAM_A SINE Alu 1 119 -14 880 296 52 16 chr6 22408041 22408426 -160006816 - L1MCa LINE L1 -5962 759 361 2081 106 14 0 chr6 22408440 22408723 -160006519 - AluSx SINE Alu -25 287 1 282 56 0 0 chr6 22409139 22409175 -160006067 + (CA)n Simple_repeat Simple_repeat 1 36 0 1289 163 9 13 chr6 22409261 22409494 -160005748 + MER46A DNA MER2_type 5 236 0 597 293 95 36 chr6 22410302 22410524 -160004718 + L2 LINE L2 2857 3091 -222 380 224 0 0 chr6 22410532 22410608 -160004634 - AluJ/FLAM SINE Alu -226 76 1 239 162 0 0 chr6 22410617 22410654 -160004588 + Tigger5 DNA MER2_type 2264 2300 -23 484 273 163 29 chr6 22410659 22410672 -160004570 + L2 LINE L2 3073 3083 -230 2301 86 10 3 chr6 22410672 22410974 -160004268 - AluSp SINE Alu -9 304 1 484 273 163 29 chr6 22410974 22411169 -160004073 + L2 LINE L2 3083 3309 -4 261 0 0 0 chr6 22411170 22411199 -160004043 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2367 98 10 65 chr6 22411304 22411386 -160003856 - MER47A DNA MER2_type -1957 366 281 2039 170 0 0 chr6 22411386 22411698 -160003544 + AluJb SINE Alu 1 312 0 2367 98 10 65 chr6 22411698 22412002 -160003240 - MER47A DNA MER2_type -2042 281 1 1841 173 3 13 chr6 22412088 22412395 -160002847 - AluJo SINE Alu -8 304 1 243 215 0 0 chr6 22413490 22413555 -160001687 + (TG)n Simple_repeat Simple_repeat 2 66 0 284 353 127 46 chr6 22413641 22413879 -160001363 - L2 LINE L2 -4 3268 2996 1816 160 21 0 chr6 22413879 22414161 -160001081 - AluSx SINE Alu -24 288 1 284 353 127 46 chr6 22414161 22414245 -160000997 - L2 LINE L2 -276 2996 2920 1792 77 5 0 chr6 22414280 22414500 -160000742 - AluSp SINE Alu -91 222 2 2160 112 10 16 chr6 22414761 22415075 -160000167 + AluSx SINE Alu 1 312 0 2656 55 0 0 chr6 22416024 22416335 -159998907 - AluY SINE Alu 0 311 1 23 0 0 0 chr6 22417476 22417499 -159997743 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 22418440 22418462 -159996780 + AT_rich Low_complexity Low_complexity 1 22 0 333 253 11 0 chr6 22420185 22420276 -159994966 + MER65A LTR ERV1 341 432 -13 198 0 0 0 chr6 22421086 22421108 -159994134 + (A)n Simple_repeat Simple_repeat 1 22 0 2202 120 7 0 chr6 22421768 22422067 -159993175 + AluSx SINE Alu 3 303 -9 203 278 0 83 chr6 22423146 22423218 -159992024 + L2 LINE L2 3202 3267 -5 257 209 124 48 chr6 22424091 22424196 -159991046 - MIR SINE MIR -13 249 137 910 152 93 0 chr6 22424208 22424359 -159990883 - FAM SINE Alu -10 165 1 200 293 108 95 chr6 22424492 22424724 -159990518 + L2 LINE L2 3032 3266 -6 3006 121 4 22 chr6 22425203 22425564 -159989678 + L1PA13 LINE L1 5678 6029 -134 2577 68 0 0 chr6 22425564 22425875 -159989367 + AluY SINE Alu 1 311 0 3006 121 4 22 chr6 22425875 22426001 -159989241 + L1PA13 LINE L1 6029 6156 -7 5374 100 36 8 chr6 22428023 22428886 -159986356 + L1PA13 LINE L1 5276 6162 -1 1421 201 32 18 chr6 22429107 22429385 -159985857 + AluJo SINE Alu 1 282 -30 255 125 0 0 chr6 22429391 22429431 -159985811 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 263 246 82 0 chr6 22429433 22429494 -159985748 + AluJ/FRAM SINE Alu 217 282 -20 234 0 0 0 chr6 22429496 22429522 -159985720 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 1337 202 48 10 chr6 22431016 22431389 -159983853 - MLT1C LTR MaLR 0 467 1 3789 214 113 44 chr6 22431389 22432233 -159983009 - L1M4c LINE L1 -4098 2548 1764 1947 174 0 0 chr6 22432233 22432537 -159982705 - AluJb SINE Alu -8 304 1 3789 214 113 44 chr6 22432537 22433170 -159982072 - L1M4c LINE L1 -4882 1764 969 2367 143 28 23 chr6 22433195 22433622 -159981620 - Tigger2a DNA MER2_type -5 429 1 3713 227 15 40 chr6 22433622 22434571 -159980671 - L1M4c LINE L1 -5610 932 8 2131 109 3 3 chr6 22434910 22435227 -159980015 - AluSg SINE Alu 0 310 1 976 68 0 0 chr6 22437053 22437171 -159978071 + AluSp/q SINE Alu 179 296 -17 349 263 0 0 chr6 22437228 22437304 -159977938 + MIR SINE MIR 187 262 0 1963 151 0 0 chr6 22437685 22437983 -159977259 - AluJb SINE Alu -14 298 1 533 274 103 45 chr6 22438119 22438522 -159976720 - MLT1J LTR MaLR -41 470 1 1875 177 0 0 chr6 22438775 22439085 -159976157 + AluJo SINE Alu 1 310 -2 1945 162 32 0 chr6 22439954 22440331 -159974911 - L1MC1 LINE L1 -174 6159 5771 1853 220 63 18 chr6 22440592 22441146 -159974096 - L1ME3 LINE L1 -2 6160 5582 467 327 0 36 chr6 22441483 22441651 -159973591 + MIR3 SINE MIR 40 201 -7 34 83 0 9 chr6 22441651 22441669 -159973573 + AT_rich Low_complexity Low_complexity 1 18 -89 1792 168 0 17 chr6 22441669 22441960 -159973282 + AluJo SINE Alu 1 286 -26 34 83 0 9 chr6 22441960 22442049 -159973193 + AT_rich Low_complexity Low_complexity 18 107 0 29 47 0 0 chr6 22443799 22443842 -159971400 + AT_rich Low_complexity Low_complexity 1 43 0 2197 124 3 0 chr6 22443851 22444149 -159971093 - AluSx SINE Alu -13 299 1 336 186 12 0 chr6 22444149 22444235 -159971007 - Charlie2 DNA MER1_type -354 2508 2422 216 158 0 0 chr6 22444267 22444324 -159970918 + (TA)n Simple_repeat Simple_repeat 1 57 0 2423 46 0 0 chr6 22444326 22444606 -159970636 - AluY SINE Alu -22 289 10 260 131 98 0 chr6 22444632 22444693 -159970549 - Charlie2 DNA MER1_type -489 2373 2307 2220 98 7 3 chr6 22445638 22445934 -159969308 + AluSg SINE Alu 1 297 -13 1591 184 30 0 chr6 22446127 22446434 -159968808 - AluJb SINE Alu 0 318 4 225 250 0 0 chr6 22446629 22446701 -159968541 + A-rich Low_complexity Low_complexity 1 72 0 23 0 0 0 chr6 22447320 22447343 -159967899 + AT_rich Low_complexity Low_complexity 1 23 0 2226 98 0 0 chr6 22447517 22447804 -159967438 + AluSx SINE Alu 1 287 -25 192 263 70 0 chr6 22448157 22448214 -159967028 + MIR SINE MIR 172 232 -30 1328 204 171 67 chr6 22448387 22449058 -159966184 - LTR1B LTR ERV1 -85 741 1 704 197 13 4 chr6 22449169 22449347 -159965895 - L1MA6 LINE L1 -2 6295 6120 2280 107 0 3 chr6 22449359 22449669 -159965573 - AluSq SINE Alu 0 313 5 882 158 0 102 chr6 22449716 22449893 -159965349 + FRAM SINE Alu 1 158 -18 22 0 0 0 chr6 22450719 22450741 -159964501 + AT_rich Low_complexity Low_complexity 1 22 0 1399 174 114 23 chr6 22450926 22451311 -159963931 - MER95 LTR ERV -10 421 2 2089 122 27 7 chr6 22451341 22451635 -159963607 - AluSx SINE Alu -12 300 1 253 279 20 102 chr6 22451770 22451859 -159963383 + MIR SINE MIR 13 87 -175 1619 204 3 20 chr6 22451859 22452163 -159963079 - AluJb SINE Alu -13 299 1 253 279 20 102 chr6 22452163 22452220 -159963022 + MIR SINE MIR 87 147 -115 333 0 0 0 chr6 22452261 22452298 -159962944 + (TG)n Simple_repeat Simple_repeat 2 38 0 1150 162 40 5 chr6 22452298 22452520 -159962722 - MLT2B2 LTR ERVL -285 230 1 756 241 122 65 chr6 22452520 22452719 -159962523 - MLT1I LTR MaLR -7 402 179 2183 110 0 31 chr6 22452719 22453036 -159962206 - AluSc SINE Alu -2 307 1 756 241 122 65 chr6 22453036 22453129 -159962113 - MLT1I LTR MaLR -230 179 93 228 225 0 56 chr6 22453880 22453969 -159961273 - L1ME1 LINE L1 -25 6141 6058 23 0 0 0 chr6 22454016 22454039 -159961203 + AT_rich Low_complexity Low_complexity 1 23 0 2301 122 0 0 chr6 22454039 22454350 -159960892 + AluSx SINE Alu 1 311 -1 1141 137 113 101 chr6 22455217 22455506 -159959736 + L1MB3 LINE L1 5838 6122 -58 2237 115 3 0 chr6 22455506 22455810 -159959432 + AluSx SINE Alu 3 307 -5 698 199 0 15 chr6 22455814 22455945 -159959297 + FLAM_A SINE Alu 2 130 -3 1141 137 113 101 chr6 22455945 22455987 -159959255 + L1MB3 LINE L1 6124 6178 -2 1249 169 55 128 chr6 22456102 22456445 -159958797 - AluYb8 SINE Alu 0 318 1 1873 173 0 13 chr6 22456698 22457005 -159958237 + AluJb SINE Alu 5 307 -5 1439 149 39 57 chr6 22457009 22457344 -159957898 + L1MB8 LINE L1 5834 6162 -16 383 98 148 0 chr6 22457586 22457647 -159957595 - U6 snRNA snRNA -37 70 1 2067 129 23 0 chr6 22458275 22458578 -159956664 + AluSx SINE Alu 1 310 -2 13109 121 74 10 chr6 22458668 22460916 -159954326 - Tigger1 DNA MER2_type 0 2418 26 304 218 161 65 chr6 22461997 22462121 -159953121 - MIR SINE MIR -16 246 111 2395 94 3 0 chr6 22462407 22462716 -159952526 + AluSx SINE Alu 1 310 -2 281 200 27 0 chr6 22463294 22463369 -159951873 + CT-rich Low_complexity Low_complexity 2 78 0 246 62 0 0 chr6 22463741 22463773 -159951469 + (A)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr6 22466729 22466753 -159948489 + AT_rich Low_complexity Low_complexity 1 24 0 1897 156 3 3 chr6 22466783 22467078 -159948164 + AluSx SINE Alu 1 295 -17 948 118 16 0 chr6 22467301 22467428 -159947814 + AluSx SINE Alu 1 129 -183 234 222 0 0 chr6 22467429 22467483 -159947759 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 1400 109 0 0 chr6 22467487 22467671 -159947571 + AluSx SINE Alu 127 310 -2 1680 166 35 31 chr6 22468760 22469049 -159946193 + AluJo SINE Alu 1 290 -22 188 83 0 28 chr6 22470360 22470396 -159944846 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1326 150 28 156 chr6 22471234 22471587 -159943655 + AluYa5 SINE Alu 1 308 -3 409 289 31 8 chr6 22471774 22471968 -159943274 - MIR SINE MIR -5 257 2 388 368 64 23 chr6 22472146 22472586 -159942656 - L2 LINE L2 -901 2413 1956 197 214 0 0 chr6 22472736 22472778 -159942464 + L2 LINE L2 3230 3271 -42 714 233 26 69 chr6 22473080 22473312 -159941930 - MIR SINE MIR -9 253 32 3631 146 33 8 chr6 22473540 22474211 -159941031 + L1MA4 LINE L1 5602 6289 -11 2432 74 3 0 chr6 22474879 22475175 -159940067 + AluY SINE Alu 1 297 -14 2256 89 0 20 chr6 22475175 22475477 -159939765 + AluY SINE Alu 1 297 -14 1343 234 163 18 chr6 22475976 22476417 -159938825 - MLT1J LTR MaLR -6 505 1 223 93 47 0 chr6 22477360 22477403 -159937839 + CT-rich Low_complexity Low_complexity 4 48 0 613 142 75 8 chr6 22477464 22477584 -159937658 - L1MA3 LINE L1 -6 6299 6172 1166 274 87 56 chr6 22477890 22478375 -159936867 - MLT1J LTR MaLR -11 500 1 2276 88 3 29 chr6 22478399 22478706 -159936536 + AluY SINE Alu 1 299 -12 2140 104 0 64 chr6 22479722 22480048 -159935194 + AluSx SINE Alu 1 305 -7 399 249 258 65 chr6 22480166 22480207 -159935035 - MIR SINE MIR -1 261 229 267 103 0 0 chr6 22480207 22480246 -159934996 + (TA)n Simple_repeat Simple_repeat 2 40 0 399 249 258 65 chr6 22480246 22480421 -159934821 - MIR SINE MIR -33 229 3 573 15 0 0 chr6 22480684 22480750 -159934492 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 191 125 175 0 chr6 22481307 22481347 -159933895 + L2 LINE L2 3221 3267 -5 34 42 0 0 chr6 22481914 22481962 -159933280 + AT_rich Low_complexity Low_complexity 1 48 0 1902 151 3 0 chr6 22483041 22483325 -159931917 - AluSx SINE Alu -26 286 2 2247 99 3 0 chr6 22484530 22484844 -159930398 - AluSp SINE Alu 0 313 1 736 177 0 57 chr6 22484854 22484995 -159930247 - FLAM_A SINE Alu 0 133 1 458 281 78 54 chr6 22485171 22485413 -159929829 + MIR SINE MIR 3 250 -12 903 144 0 0 chr6 22488443 22488575 -159926667 + FLAM_C SINE Alu 1 132 -1 189 74 0 0 chr6 22489469 22489496 -159925746 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 251 233 17 0 chr6 22490120 22490180 -159925062 - L1ME LINE L1 -389 5775 5715 21 36 0 0 chr6 22490239 22490267 -159924975 + AT_rich Low_complexity Low_complexity 1 28 0 279 298 26 53 chr6 22490475 22490589 -159924653 + MIR3 SINE MIR 92 202 -6 1323 239 123 6 chr6 22491537 22491888 -159923354 + MSTD LTR MaLR 1 392 -4 190 320 40 13 chr6 22492234 22492309 -159922933 + L2 LINE L2 2603 2679 -635 360 267 125 62 chr6 22492311 22492412 -159922830 - MIR SINE MIR 0 262 144 1609 174 49 54 chr6 22492412 22492802 -159922440 - MLT1B LTR MaLR -2 388 1 360 267 125 62 chr6 22492802 22492876 -159922366 - MIR SINE MIR -118 144 76 204 343 41 46 chr6 22492878 22493097 -159922145 + L2 LINE L2 2287 2504 -810 1707 160 7 42 chr6 22493120 22493427 -159921815 - AluJb SINE Alu -6 306 11 5963 101 19 12 chr6 22493549 22494584 -159920658 + L1PA8 LINE L1 5132 6172 0 2238 211 42 39 chr6 22495017 22495639 -159919603 - MLT1E3 LTR MaLR 0 624 1 504 216 17 9 chr6 22495967 22496083 -159919159 - MER94 DNA DNA -13 121 5 666 128 147 0 chr6 22496342 22496451 -159918791 - AluJb SINE Alu -187 125 1 258 313 42 42 chr6 22496516 22496618 -159918624 + MIR SINE MIR 97 201 -61 1940 160 48 3 chr6 22496618 22496950 -159918292 + MER7A DNA MER2_type 2 346 0 258 313 42 42 chr6 22496950 22497013 -159918229 + MIR SINE MIR 200 262 0 243 0 0 0 chr6 22498050 22498077 -159917165 + (CAG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr6 22498503 22498539 -159916703 + AT_rich Low_complexity Low_complexity 1 36 0 6060 198 64 14 chr6 22499609 22500996 -159914246 - Cheshire DNA MER1_type -83 2337 881 1056 211 5 0 chr6 22501600 22501808 -159913434 + MER3 DNA MER1_type 1 209 0 376 267 30 59 chr6 22502024 22502159 -159913083 - L2 LINE L2 -1 3312 3182 1248 91 151 0 chr6 22502669 22502868 -159912374 - MER30 DNA MER1_type 0 230 2 2033 148 33 12 chr6 22503118 22503448 -159911794 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr6 22504703 22504726 -159910516 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr6 22505377 22505405 -159909837 + AT_rich Low_complexity Low_complexity 1 28 0 365 240 96 10 chr6 22507030 22507134 -159908108 + MIR SINE MIR 140 252 -10 333 47 0 0 chr6 22507401 22507444 -159907798 + (TG)n Simple_repeat Simple_repeat 2 44 0 186 241 56 19 chr6 22507458 22507512 -159907730 + MIR3 SINE MIR 141 196 -12 1404 213 51 14 chr6 22508871 22509223 -159906019 - MLT1A1 LTR MaLR 0 365 1 295 234 137 48 chr6 22509714 22509838 -159905404 + MIR SINE MIR 1 136 -72 613 260 85 0 chr6 22510060 22510237 -159905005 + MIR SINE MIR 40 231 -31 672 185 76 0 chr6 22511172 22511291 -159903951 - FLAM_A SINE Alu -4 129 2 1038 175 20 55 chr6 22512190 22512390 -159902852 - MER58A DNA MER1_type -31 193 1 2951 165 47 30 chr6 22514340 22514946 -159900296 - LTR27 LTR ERV1 0 636 1 1234 180 0 72 chr6 22515208 22515458 -159899784 + AluJb SINE Alu 58 289 -23 279 284 99 81 chr6 22515541 22515752 -159899490 + MIR SINE MIR 15 229 -33 578 255 103 22 chr6 22515827 22516011 -159899231 - MIR SINE MIR 0 262 64 1613 180 0 76 chr6 22516431 22516748 -159898494 - AluJo SINE Alu -17 295 3 775 156 0 8 chr6 22516809 22516937 -159898305 + FLAM_C SINE Alu 1 127 -16 4707 221 89 31 chr6 22517098 22519422 -159895820 - L1ME1 LINE L1 -48 6118 3663 5794 78 25 1 chr6 22519454 22520246 -159894996 - L1PA10 LINE L1 -1 7605 6795 * 15722 141 7 2 chr6 22520234 22522804 -159892438 - L1PA10 LINE L1 -1627 5957 3375 2244 259 27 54 chr6 22522798 22523832 -159891410 - L1PA10 LINE L1 -4745 2253 1 * 1410 145 8 20 chr6 22523850 22524099 -159891143 - L1PB3 LINE L1 -8 6146 5901 1696 244 109 10 chr6 22524100 22524246 -159890996 - L1ME1 LINE L1 -2470 3676 3546 183 42 0 0 chr6 22524246 22524270 -159890972 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1696 244 109 10 chr6 22524270 22524810 -159890432 - L1ME1 LINE L1 -2600 3546 2922 213 0 36 0 chr6 22526979 22527007 -159888235 + (TTTG)n Simple_repeat Simple_repeat 2 168 0 2244 98 0 0 chr6 22527007 22527292 -159887950 - AluSx SINE Alu -1 312 1 312 183 158 85 chr6 22527635 22527881 -159887361 + HAL1 LINE L1 922 1185 -1322 1083 288 162 34 chr6 22527930 22529029 -159886213 + HAL1 LINE L1 1267 2506 -1 463 44 176 0 chr6 22530028 22530096 -159885146 + MADE1 DNA Mariner 1 80 0 846 192 8 110 chr6 22530532 22530683 -159884559 - L1ME1 LINE L1 -6 6160 6042 1703 172 0 14 chr6 22530683 22531003 -159884239 - AluJo SINE Alu 0 316 1 846 192 8 110 chr6 22531003 22531104 -159884138 - L1ME1 LINE L1 -124 6042 5932 784 259 19 67 chr6 22531160 22531531 -159883711 - L1ME3A LINE L1 -53 6100 5748 1105 75 0 20 chr6 22531539 22531685 -159883557 + AluY SINE Alu 132 274 -37 4059 251 75 39 chr6 22531741 22533851 -159881391 - L1ME3A LINE L1 -475 5678 3494 2460 59 0 13 chr6 22533852 22534155 -159881087 - AluY SINE Alu 0 311 13 232 250 0 0 chr6 22534419 22534487 -159880755 + T-rich Low_complexity Low_complexity 1 68 0 279 348 8 8 chr6 22534496 22534614 -159880628 - MLT1-int LTR MaLR -555 816 699 234 253 67 20 chr6 22534619 22534769 -159880473 - L1ME3A LINE L1 -5002 1308 1152 402 253 11 0 chr6 22534916 22535007 -159880235 + MER5A DNA MER1_type 12 103 -86 296 247 93 83 chr6 22535043 22535233 -159880009 - L1MEd LINE L1 -5104 1015 828 2298 115 50 6 chr6 22535233 22535590 -159879652 + THE1C LTR MaLR 3 375 0 296 247 93 83 chr6 22535590 22535834 -159879408 - L1MEd LINE L1 -5291 828 593 863 259 56 0 chr6 22535943 22536140 -159879102 + MER63A DNA MER1_type 1 208 -2 743 63 0 0 chr6 22536563 22536658 -159878584 + AluY SINE Alu 213 307 -4 1745 157 85 9 chr6 22536771 22537102 -159878140 - L1MC1 LINE L1 -12 6321 5966 368 231 148 0 chr6 22588445 22588553 -159826689 + L2 LINE L2 3189 3312 -1 1464 188 83 24 chr6 22589251 22589587 -159825655 - MSTD LTR MaLR 0 396 41 688 241 36 27 chr6 22589587 22589811 -159825431 + MSTD LTR MaLR 1 226 -170 317 333 38 8 chr6 22590482 22590614 -159824628 - MIR SINE MIR -66 196 61 1750 166 49 3 chr6 22590617 22590901 -159824341 - AluJb SINE Alu -15 297 1 1967 149 0 0 chr6 22591780 22592095 -159823147 - AluSx SINE Alu 0 315 1 2117 82 16 43 chr6 22592102 22592405 -159822837 - AluSc SINE Alu -14 295 1 405 297 43 0 chr6 22592940 22593078 -159822164 + MIR3 SINE MIR 51 194 -14 2249 57 43 33 chr6 22594532 22594832 -159820410 + AluY SINE Alu 1 303 -8 2395 63 0 3 chr6 22594832 22595132 -159820110 + AluY SINE Alu 1 299 -12 4192 138 17 13 chr6 22595150 22595167 -159820075 + L1MB2 LINE L1 5458 5473 -698 225 0 0 0 chr6 22595167 22595192 -159820050 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4192 138 17 13 chr6 22595192 22595882 -159819360 + L1MB2 LINE L1 5473 6168 -3 627 301 26 40 chr6 22595893 22596122 -159819120 + MIR SINE MIR 22 253 -9 671 231 19 39 chr6 22596179 22596439 -159818803 + L1MC5 LINE L1 7659 7913 -48 1311 92 35 0 chr6 22596800 22596973 -159818269 + AluSg/x SINE Alu 133 311 -1 515 172 0 0 chr6 22597027 22597114 -159818128 + FLAM SINE Alu 41 127 -16 1995 130 3 7 chr6 22597129 22597413 -159817829 + AluSx SINE Alu 1 283 -29 252 0 0 0 chr6 22597679 22597707 -159817535 + (T)n Simple_repeat Simple_repeat 1 28 0 333 251 124 66 chr6 22598529 22598770 -159816472 + MIR SINE MIR 3 262 0 323 232 184 14 chr6 22598811 22599018 -159816224 + MER113 DNA MER1_type? 36 277 -244 2417 96 0 3 chr6 22599890 22600203 -159815039 - AluSx SINE Alu 0 312 1 561 227 67 0 chr6 22600207 22600357 -159814885 - L1MB4 LINE L1 -118 6062 5903 308 220 242 0 chr6 22600617 22600708 -159814534 + L2 LINE L2 3197 3309 -4 574 250 115 48 chr6 22600924 22601189 -159814053 + L1ME4a LINE L1 5692 5993 -128 2131 135 0 10 chr6 22601189 22601500 -159813742 + AluJb SINE Alu 1 308 -4 574 250 115 48 chr6 22601500 22601626 -159813616 + L1ME4a LINE L1 5993 6109 -12 368 294 97 59 chr6 22602108 22602352 -159812890 + MIR SINE MIR 3 262 0 660 131 65 0 chr6 22602393 22602500 -159812742 + FLAM_A SINE Alu 20 133 -9 27 0 0 0 chr6 22604152 22604179 -159811063 + AT_rich Low_complexity Low_complexity 1 27 0 352 347 8 16 chr6 22604374 22604498 -159810744 + L2 LINE L2 2578 2700 -614 294 362 11 32 chr6 22604547 22604641 -159810601 + L2 LINE L2 3102 3193 -79 222 62 0 0 chr6 22605475 22605507 -159809735 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 2025 119 18 0 chr6 22605507 22605784 -159809458 - AluSg SINE Alu -28 282 1 580 268 176 35 chr6 22606209 22606376 -159808866 - L1ME4a LINE L1 -35 6086 5944 2184 89 7 7 chr6 22606376 22606667 -159808575 - AluSg SINE Alu -19 291 1 580 268 176 35 chr6 22606667 22606981 -159808261 - L1ME4a LINE L1 -177 5944 5537 338 306 0 37 chr6 22606987 22607121 -159808121 - L1ME4a LINE L1 -2322 3824 3696 187 320 31 41 chr6 22607347 22607444 -159807798 - MIR SINE MIR -145 117 22 1899 127 7 29 chr6 22607624 22607932 -159807310 + AluJo SINE Alu 1 301 -11 394 286 141 42 chr6 22608023 22608264 -159806978 - L1ME4a LINE L1 -2705 3441 3177 31 26 0 0 chr6 22608346 22608384 -159806858 + AT_rich Low_complexity Low_complexity 1 38 0 284 333 114 8 chr6 22608729 22608852 -159806390 - L2 LINE L2 -10 3303 3168 2036 91 0 0 chr6 22608952 22609204 -159806038 - AluSx SINE Alu -60 252 1 207 100 0 0 chr6 22609870 22609900 -159805342 + (CA)n Simple_repeat Simple_repeat 2 31 0 325 308 0 0 chr6 22610604 22610682 -159804560 - MER2 DNA MER2_type 0 345 268 931 170 48 0 chr6 22610768 22610933 -159804309 - MER2 DNA MER2_type -172 173 1 1832 236 63 31 chr6 22611174 22611749 -159803493 + MLT1E LTR MaLR 1 593 0 329 295 68 17 chr6 22611762 22611999 -159803243 + L1ME LINE L1 4814 5062 -1084 768 266 19 62 chr6 22612144 22612167 -159803075 + L1ME LINE L1 5260 5282 -884 1797 158 0 61 chr6 22612167 22612292 -159802950 + AluJo SINE Alu 1 132 -180 2350 113 0 0 chr6 22612292 22612602 -159802640 + AluSx SINE Alu 1 310 -2 1797 158 0 61 chr6 22612602 22612805 -159802437 + AluJo SINE Alu 132 309 -3 768 266 19 62 chr6 22612805 22612894 -159802348 + L1ME LINE L1 5282 5373 -793 198 103 0 0 chr6 22612894 22612923 -159802319 + (TA)n Simple_repeat Simple_repeat 2 30 0 768 266 19 62 chr6 22612923 22613255 -159801987 + L1ME LINE L1 5373 5683 -483 2261 102 0 13 chr6 22615875 22616189 -159799053 + AluSg SINE Alu 1 310 0 647 250 88 20 chr6 22616748 22616952 -159798290 - MIR SINE MIR -42 220 3 569 303 58 33 chr6 22617681 22617922 -159797320 + L2 LINE L2 2569 2815 -499 452 219 164 64 chr6 22617950 22618169 -159797073 - L1ME LINE L1 -331 5790 5550 1073 178 8 54 chr6 22618767 22619009 -159796233 - AluJo SINE Alu -6 306 76 2566 112 3 11 chr6 22619282 22619649 -159795593 + THE1B LTR MaLR 1 364 0 2045 132 0 7 chr6 22619674 22619962 -159795280 - AluSx SINE Alu -21 291 6 22 0 0 0 chr6 22621525 22621547 -159793695 + AT_rich Low_complexity Low_complexity 1 22 0 622 300 42 6 chr6 22622234 22622434 -159792808 - MIR SINE MIR -54 208 3 952 222 36 13 chr6 22623188 22623413 -159791829 - MIR SINE MIR -19 243 14 258 285 110 89 chr6 22623427 22623673 -159791569 + L2 LINE L2 3017 3267 -5 2142 122 6 6 chr6 22625340 22625651 -159789591 - AluSq SINE Alu -2 311 1 211 182 0 0 chr6 22626318 22626351 -159788891 + polypyrimidine Low_complexity Low_complexity 3 35 0 1560 175 16 62 chr6 22626357 22626677 -159788565 - AluJo SINE Alu -6 306 2 1349 194 121 59 chr6 22627750 22628172 -159787070 - MLT1D LTR MaLR -57 448 1 333 264 69 129 chr6 22628582 22628900 -159786342 + MLT1H LTR MaLR 124 422 -127 348 24 0 0 chr6 22629036 22629077 -159786165 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1068 244 119 44 chr6 22629077 22629596 -159785646 - L2 LINE L2 -13 3300 2736 2230 184 60 7 chr6 22629604 22630142 -159785100 - L1MB4 LINE L1 -1 6179 5614 226 239 0 0 chr6 22630144 22630190 -159785052 - L2 LINE L2 -565 2749 2704 549 281 80 5 chr6 22630638 22630837 -159784405 - MIR SINE MIR -11 251 38 29 47 0 0 chr6 22631226 22631269 -159783973 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr6 22631312 22631335 -159783907 + AT_rich Low_complexity Low_complexity 1 23 0 1833 162 0 19 chr6 22631888 22632196 -159783046 + AluJb SINE Alu 1 302 -10 541 241 122 82 chr6 22632267 22632586 -159782656 + MLT1I LTR MaLR 69 400 -9 235 339 54 8 chr6 22632876 22633006 -159782236 + LTR67 LTR ERVL 97 232 -325 324 251 105 47 chr6 22633027 22633218 -159782024 + LTR67 LTR ERVL 356 557 0 242 236 69 97 chr6 22633286 22633329 -159781913 + L2 LINE L2 3136 3179 -134 2125 167 3 21 chr6 22633329 22633701 -159781541 - MLT1A1 LTR MaLR 0 365 1 242 236 69 97 chr6 22633701 22633801 -159781441 + L2 LINE L2 3179 3275 -38 434 213 37 9 chr6 22633815 22633923 -159781319 + MER94 DNA DNA 1 111 -23 261 240 53 13 chr6 22634797 22634872 -159780370 + MIR SINE MIR 185 262 0 681 287 30 0 chr6 22636227 22636394 -159778848 - MIR SINE MIR -90 172 1 1156 224 53 0 chr6 22636421 22636666 -159778576 - AluJo SINE Alu -17 295 38 1054 79 7 0 chr6 22636768 22636920 -159778322 + MER4D LTR ERV1 176 328 -544 2242 99 0 3 chr6 22636921 22637214 -159778028 - AluSx SINE Alu -14 298 7 1806 137 7 52 chr6 22637383 22637690 -159777552 - AluJb SINE Alu -19 293 1 1404 179 16 35 chr6 22639586 22639904 -159775338 - MER33 DNA MER1_type 0 324 13 478 152 31 96 chr6 22639996 22640133 -159775109 + MIR3 SINE MIR 74 202 -6 330 281 106 55 chr6 22640649 22640848 -159774394 - L1ME LINE L1 -645 5476 5268 306 91 0 0 chr6 22641495 22641539 -159773703 + L1MB1 LINE L1 6120 6163 -5 2306 93 3 3 chr6 22643089 22643390 -159771852 - AluSq SINE Alu -10 303 3 201 273 191 9 chr6 22644327 22644437 -159770805 + MIR3 SINE MIR 67 196 -12 21 75 0 15 chr6 22644695 22644727 -159770515 + AT_rich Low_complexity Low_complexity 1 32 -34 2949 6 0 0 chr6 22644727 22645045 -159770197 - AluYb8 SINE Alu 0 318 1 21 75 0 15 chr6 22645045 22645079 -159770163 + AT_rich Low_complexity Low_complexity 32 66 0 1869 158 0 22 chr6 22645536 22645847 -159769395 - AluJo SINE Alu -8 304 1 204 97 0 0 chr6 22646030 22646061 -159769181 + (GA)n Simple_repeat Simple_repeat 2 32 0 213 91 91 23 chr6 22646245 22646289 -159768953 - MIR3 SINE MIR -49 159 113 1166 179 133 60 chr6 22646594 22646963 -159768279 - MSTD LTR MaLR 0 396 1 675 165 0 0 chr6 22647657 22647772 -159767470 - FRAM SINE Alu -2 174 60 23 0 0 0 chr6 22647773 22647796 -159767446 + AT_rich Low_complexity Low_complexity 1 23 0 2091 138 0 0 chr6 22647897 22648188 -159767054 - AluSx SINE Alu -21 291 1 1843 164 4 0 chr6 22648199 22648535 -159766707 - AluJb SINE Alu 0 337 1 2373 89 0 0 chr6 22649603 22649895 -159765347 + AluSx SINE Alu 3 294 -18 300 53 0 0 chr6 22651243 22651281 -159763961 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 255 125 0 0 chr6 22653715 22653763 -159761479 + L1MC3 LINE L1 7738 7785 0 21 0 0 0 chr6 22655072 22655093 -159760149 + AT_rich Low_complexity Low_complexity 1 21 0 1378 171 4 61 chr6 22655727 22655904 -159759338 - AluJo SINE Alu -8 304 147 1988 160 3 6 chr6 22655904 22656217 -159759025 - AluSx SINE Alu 0 312 1 1378 171 4 61 chr6 22656217 22656319 -159758923 - AluJo SINE Alu -165 147 41 1219 87 35 23 chr6 22656373 22656546 -159758696 - AluSg/x SINE Alu -5 307 133 273 259 25 0 chr6 22656925 22657006 -159758236 - L1MC5 LINE L1 -64 7897 7815 192 217 130 54 chr6 22659544 22659636 -159755606 + MIR SINE MIR 105 203 -59 407 51 0 17 chr6 22662510 22662569 -159752673 + (TG)n Simple_repeat Simple_repeat 1 58 0 436 245 40 31 chr6 22662696 22662857 -159752385 + MIR SINE MIR 3 161 -62 1719 192 23 0 chr6 22663802 22664104 -159751138 - AluJb SINE Alu -3 309 1 256 335 28 84 chr6 22664433 22664612 -159750630 + L2 LINE L2 3099 3267 -5 264 282 94 31 chr6 22664839 22665041 -159750201 + MER20B DNA MER1_type 5 219 0 2770 48 11 3 chr6 22665072 22665424 -159749818 - THE1A LTR MaLR 0 355 1 556 299 128 80 chr6 22665433 22665848 -159749394 + L2 LINE L2 2836 3270 -2 591 237 182 40 chr6 22666098 22666351 -159748891 + MER5C DNA MER1_type 1 289 -35 334 233 69 111 chr6 22668468 22668657 -159746585 + MIR SINE MIR 70 250 -12 1757 153 3 66 chr6 22668800 22669133 -159746109 + AluJb SINE Alu 1 312 0 1197 190 9 0 chr6 22669999 22670210 -159745032 + AluJo SINE Alu 85 297 -15 2516 59 0 3 chr6 22670865 22671169 -159744073 + AluY SINE Alu 1 303 -8 21 57 0 0 chr6 22673041 22673076 -159742166 + AT_rich Low_complexity Low_complexity 1 35 0 2154 110 0 20 chr6 22673442 22673742 -159741500 - AluSx SINE Alu -18 294 1 2268 67 0 3 chr6 22674151 22674454 -159740788 - AluY SINE Alu 0 302 1 246 367 46 0 chr6 22676683 22676792 -159738450 - L2 LINE L2 -3 3269 3156 181 219 0 0 chr6 22676896 22676928 -159738314 - L2 LINE L2 -90 3182 3151 222 37 0 0 chr6 22677558 22677585 -159737657 + (T)n Simple_repeat Simple_repeat 1 27 0 669 281 45 10 chr6 22678323 22678522 -159736720 + MIR SINE MIR 45 250 -12 2064 95 7 52 chr6 22679034 22679339 -159735903 + AluSc SINE Alu 1 291 -18 1169 156 6 0 chr6 22679808 22679988 -159735254 - AluJo SINE Alu -131 181 1 1058 177 0 21 chr6 22682567 22682753 -159732489 + MLT1D LTR MaLR 2 183 -322 1552 113 61 0 chr6 22682763 22683012 -159732230 + AluSx SINE Alu 59 320 0 1046 211 95 9 chr6 22683016 22683248 -159731994 + MLT1D LTR MaLR 248 499 -6 273 362 80 6 chr6 22683972 22684135 -159731107 - MIR SINE MIR -9 253 79 578 235 74 19 chr6 22684369 22684531 -159730711 - MIR SINE MIR -44 218 48 2312 50 18 0 chr6 22685144 22685467 -159729775 - AluY SINE Alu 0 328 1 715 170 177 0 chr6 22686576 22686723 -159728519 + MER69A DNA AcHobo 5 177 0 401 270 54 0 chr6 22687088 22687199 -159728043 - L2 LINE L2 0 3272 3156 202 332 145 31 chr6 22687711 22687904 -159727338 + L2 LINE L2 2467 2681 -633 2150 125 0 0 chr6 22688627 22688922 -159726320 - AluSx SINE Alu -17 295 1 2284 90 0 19 chr6 22689880 22690190 -159725052 - AluSq SINE Alu -9 304 1 1900 164 3 3 chr6 22690456 22690768 -159724474 - AluJo SINE Alu 0 312 1 205 339 0 37 chr6 22691421 22691530 -159723712 + CT-rich Low_complexity Low_complexity 4 108 0 526 281 109 34 chr6 22691941 22692315 -159722927 + MLT1I LTR MaLR 1 449 -1 342 0 0 0 chr6 22692414 22692452 -159722790 + (TG)n Simple_repeat Simple_repeat 2 39 0 2007 226 145 15 chr6 22692512 22693131 -159722111 - L1ME3A LINE L1 0 6170 5461 402 335 70 10 chr6 22693231 22693431 -159721811 - MIR SINE MIR -31 231 20 210 143 0 0 chr6 22693642 22693677 -159721565 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 251 261 29 14 chr6 22693960 22694029 -159721213 + GA-rich Low_complexity Low_complexity 5 74 0 492 208 69 28 chr6 22694029 22694173 -159721069 + L1MA9 LINE L1 6125 6274 -38 2042 220 69 8 chr6 22694210 22694688 -159720554 + MER119 DNA MER1_type 17 523 -60 5368 217 30 15 chr6 22695876 22697247 -159717995 + L1MB4 LINE L1 4089 5490 -690 3790 153 32 7 chr6 22697243 22698199 -159717043 - L1PA16 LINE L1 -547 5619 4645 * 3609 104 17 10 chr6 22698204 22698724 -159716518 + L1PA16 LINE L1 5643 6166 0 3078 162 36 5 chr6 22698725 22699281 -159715961 + L1MB4 LINE L1 5486 6058 -122 193 253 33 77 chr6 22699330 22699421 -159715821 - L2 LINE L2 -498 2816 2730 913 45 0 9 chr6 22700598 22700708 -159714534 + AluY SINE Alu 120 228 -83 2189 106 0 3 chr6 22700895 22701177 -159714065 - AluSq SINE Alu -17 296 16 288 288 55 49 chr6 22701193 22701458 -159713784 - L1MC5 LINE L1 -308 7679 7481 261 333 10 10 chr6 22701628 22701724 -159713518 - MER5A DNA MER1_type -68 121 26 8949 169 51 17 chr6 22701971 22702051 -159713191 - L1MC3 LINE L1 -607 7178 7102 8657 108 45 9 chr6 22702051 22703308 -159711934 - HSMAR2 DNA Mariner 0 1302 1 8949 169 51 17 chr6 22703308 22703366 -159711876 - L1MC3 LINE L1 -683 7102 7047 180 77 0 0 chr6 22703366 22703392 -159711850 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 8949 169 51 17 chr6 22703392 22704344 -159710898 - L1MC3 LINE L1 -738 7047 6007 180 0 0 0 chr6 22704344 22704364 -159710878 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8949 169 51 17 chr6 22704364 22704968 -159710274 - L1MC3 LINE L1 -1778 6007 5425 2163 135 0 0 chr6 22705068 22705372 -159709870 + AluSx SINE Alu 1 304 -8 2695 99 31 3 chr6 22706353 22706707 -159708535 - THE1B LTR MaLR 0 364 1 1522 123 176 0 chr6 22708325 22708569 -159706673 + AluSx SINE Alu 1 287 -25 789 202 0 8 chr6 22709205 22709334 -159705908 + FLAM_C SINE Alu 2 129 -14 583 78 31 31 chr6 22709334 22709463 -159705779 + (TA)n Simple_repeat Simple_repeat 1 129 0 297 333 89 15 chr6 22709545 22709680 -159705562 - L2 LINE L2 -1 3271 3127 2032 145 0 0 chr6 22709978 22710274 -159704968 - AluSx SINE Alu -16 296 1 451 272 114 80 chr6 22710419 22710857 -159704385 - MLT1J LTR MaLR -56 455 3 470 233 27 48 chr6 22710994 22711065 -159704177 + MER5B DNA MER1_type 36 107 -71 808 197 34 56 chr6 22711065 22711198 -159704044 - MER5B DNA MER1_type -4 174 44 2297 76 20 0 chr6 22711198 22711499 -159703743 + AluY SINE Alu 1 307 -4 808 197 34 56 chr6 22711499 22711543 -159703699 - MER5B DNA MER1_type -134 44 1 470 233 27 48 chr6 22711543 22711617 -159703625 + MER5B DNA MER1_type 107 178 0 1885 151 3 10 chr6 22712473 22712764 -159702478 - AluJb SINE Alu -23 289 1 545 264 192 6 chr6 22712935 22713117 -159702125 - MIR SINE MIR 0 262 47 219 146 0 24 chr6 22713153 22713195 -159702047 + (GGA)n Simple_repeat Simple_repeat 1 40 0 2260 122 165 5 chr6 22713425 22713794 -159701448 + MSTA LTR MaLR 1 428 0 413 127 70 0 chr6 22714176 22714247 -159700995 + AluJ/FRAM SINE Alu 230 305 -7 335 355 93 23 chr6 22714468 22714727 -159700515 + L2 LINE L2 2926 3202 -70 366 247 21 0 chr6 22716090 22716183 -159699059 - MIR3 SINE MIR -6 202 108 401 294 83 53 chr6 22717156 22717384 -159697858 - MIR SINE MIR -20 242 8 5731 105 13 5 chr6 22717650 22718478 -159696764 + L1PA16 LINE L1 5332 6166 0 2600 60 0 13 chr6 22718591 22718905 -159696337 - AluY SINE Alu -1 310 1 1823 177 16 47 chr6 22719348 22719871 -159695371 + L1MB2 LINE L1 5647 6125 -46 234 143 0 41 chr6 22719923 22719972 -159695270 + L1MB5 LINE L1 6096 6142 -32 513 153 0 0 chr6 22719972 22720044 -159695198 + AluJ/FRAM SINE Alu 221 292 -20 2033 128 4 0 chr6 22720189 22720470 -159694772 - AluSx SINE Alu -13 299 18 2449 42 0 3 chr6 22721357 22721674 -159693568 + AluY SINE Alu 1 316 0 1500 201 108 31 chr6 22721759 22722185 -159693057 - MLT1C LTR MaLR -2 465 17 226 263 81 61 chr6 22722435 22722534 -159692708 - MIR SINE MIR -90 118 18 1721 157 31 20 chr6 22723627 22723920 -159691322 - AluJo SINE Alu -16 296 1 186 336 64 27 chr6 22724384 22724494 -159690748 - MIR SINE MIR -128 134 21 497 337 121 8 chr6 22724505 22724861 -159690381 - L2 LINE L2 -941 2373 1978 220 247 0 110 chr6 22724961 22725034 -159690208 + L2 LINE L2 2244 2308 -1006 1232 206 14 0 chr6 22725330 22725549 -159689693 - MER58A DNA MER1_type -2 222 1 207 139 0 0 chr6 22725763 22725799 -159689443 + (TG)n Simple_repeat Simple_repeat 1 36 0 1595 174 10 41 chr6 22725799 22726093 -159689149 - AluJo SINE Alu -27 285 1 2381 100 3 0 chr6 22726114 22726423 -159688819 - AluSx SINE Alu -2 310 1 2094 113 19 10 chr6 22727716 22728025 -159687217 - AluSx SINE Alu 0 312 1 2241 118 0 0 chr6 22728568 22728873 -159686369 - AluSx SINE Alu -7 305 1 696 167 161 6 chr6 22728880 22729060 -159686182 - L1MD3 LINE L1 0 7995 7788 867 158 12 18 chr6 22730632 22730796 -159684446 + L1MB3 LINE L1 6021 6183 0 253 245 147 59 chr6 22730846 22730948 -159684294 + L2 LINE L2 3183 3293 -20 264 244 126 50 chr6 22734010 22734129 -159681113 + L3 LINE CR1 1375 1502 -75 1937 252 50 33 chr6 22734160 22734380 -159680862 + MLT1E LTR MaLR 2 217 -376 3713 114 32 31 chr6 22734380 22734804 -159680438 + MER41C LTR ERV1 1 423 -131 2049 133 0 41 chr6 22734804 22735121 -159680121 - AluSx SINE Alu -8 304 1 2456 73 0 3 chr6 22735126 22735428 -159679814 - AluY SINE Alu -10 301 1 3713 114 32 31 chr6 22735428 22735550 -159679692 + MER41C LTR ERV1 426 554 0 1937 252 50 33 chr6 22735550 22735908 -159679334 + MLT1E LTR MaLR 217 590 -3 2267 140 25 68 chr6 22737232 22737676 -159677566 - L1MB5 LINE L1 -2 6172 5748 208 353 29 0 chr6 22739553 22739621 -159675621 - L3 LINE CR1 -84 1493 1424 1653 184 110 60 chr6 22739771 22740115 -159675127 - MLT1C LTR MaLR -8 459 87 2165 147 0 0 chr6 22740115 22740427 -159674815 - AluSx SINE Alu 0 312 1 1653 184 110 60 chr6 22740427 22740517 -159674725 - MLT1C LTR MaLR -380 87 3 2196 114 30 0 chr6 22742185 22742484 -159672758 + AluSc SINE Alu 1 308 -1 2231 61 0 31 chr6 22742484 22742805 -159672437 + AluY SINE Alu 1 313 0 798 258 103 66 chr6 22742819 22742893 -159672349 - L1ME4a LINE L1 -11 6110 6040 2319 77 10 17 chr6 22742893 22743191 -159672051 - AluSg1 SINE Alu -13 296 1 798 258 103 66 chr6 22743191 22743542 -159671700 - L1ME4a LINE L1 -81 6040 5669 1513 186 37 77 chr6 22743792 22743982 -159671260 - MLT1B LTR MaLR 0 390 223 2946 138 17 0 chr6 22743982 22744402 -159670840 - MSTC LTR MaLR -1 427 1 1513 186 37 77 chr6 22744402 22744614 -159670628 - MLT1B LTR MaLR -167 223 4 242 214 0 0 chr6 22744765 22744821 -159670421 - HAL1 LINE L1 -2 2505 2450 582 208 150 77 chr6 22744862 22745172 -159670070 - MLT1E1 LTR MaLR -263 330 43 935 259 95 45 chr6 22745479 22745958 -159669284 - HAL1 LINE L1 -973 1534 1026 4288 110 64 0 chr6 22745958 22746533 -159668709 + LTR9 LTR ERV1 1 612 0 935 259 95 45 chr6 22746533 22746567 -159668675 - HAL1 LINE L1 -1481 1026 995 245 343 30 49 chr6 22746701 22746966 -159668276 - HAL1 LINE L1 -2111 396 137 2379 87 0 10 chr6 22749096 22749406 -159665836 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr6 22749505 22749530 -159665712 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 276 81 65 chr6 22749831 22749954 -159665288 + MIR3 SINE MIR 84 208 0 466 178 0 19 chr6 22750990 22751097 -159664145 + CT-rich Low_complexity Low_complexity 2 106 0 887 278 45 36 chr6 22752003 22752548 -159662694 + L1MEc LINE L1 1774 2279 -3936 3646 142 42 30 chr6 22752574 22752776 -159662466 + L1MA7 LINE L1 5620 5818 -473 2246 104 0 3 chr6 22752776 22753083 -159662159 + AluY SINE Alu 2 307 -4 3646 142 42 30 chr6 22753083 22753221 -159662021 + L1MA7 LINE L1 5818 5953 -338 2531 55 0 13 chr6 22753221 22753533 -159661709 + AluY SINE Alu 1 308 -3 3646 142 42 30 chr6 22753533 22753855 -159661387 + L1MA7 LINE L1 5953 6291 0 7286 208 81 76 chr6 22753879 22754371 -159660871 + L1MB8 LINE L1 2983 3471 -2707 2150 115 121 0 chr6 22754371 22754693 -159660549 - MER46B DNA MER2_type 0 236 1 7286 208 81 76 chr6 22754693 22756485 -159658757 + L1MB8 LINE L1 3471 5284 -894 234 0 0 0 chr6 22756485 22756511 -159658731 + (TC)n Simple_repeat Simple_repeat 1 26 0 7286 208 81 76 chr6 22756511 22757405 -159657837 + L1MB8 LINE L1 5284 6172 -6 1878 158 0 11 chr6 22757416 22757726 -159657516 - AluSx SINE Alu 0 307 1 541 307 52 44 chr6 22758523 22758699 -159656543 - MARNA DNA Mariner -17 569 396 1816 122 0 8 chr6 22758699 22758953 -159656289 - AluSg SINE Alu -36 274 23 541 307 52 44 chr6 22758953 22759138 -159656104 - MARNA DNA Mariner -190 396 205 1907 163 0 7 chr6 22759167 22759462 -159655780 - AluJo SINE Alu -19 293 1 180 0 0 0 chr6 22759797 22759817 -159655425 + (TA)n Simple_repeat Simple_repeat 1 20 0 2305 128 6 0 chr6 22759823 22760151 -159655091 - L1PA16 LINE L1 -9 6157 5828 908 202 0 16 chr6 22760152 22760335 -159654907 + L1P4 LINE L1 5611 5790 -376 2229 121 3 0 chr6 22761027 22761333 -159653909 - AluSx SINE Alu -5 307 1 1897 146 7 7 chr6 22762989 22763284 -159651958 - AluJo SINE Alu -17 295 1 199 333 123 0 chr6 22763404 22763485 -159651757 + L2 LINE L2 3206 3296 -17 653 302 27 18 chr6 22763545 22763767 -159651475 + MIR SINE MIR 5 228 -34 797 154 79 106 chr6 22764757 22765063 -159650179 + MLT1C LTR MaLR 1 269 -198 241 213 0 0 chr6 22765217 22765264 -159649978 - L2 LINE L2 -5 3267 3221 338 307 37 12 chr6 22765274 22765437 -159649805 - L2 LINE L2 -2660 654 488 1000 204 11 11 chr6 22765478 22765664 -159649578 - MER5A DNA MER1_type 0 189 4 1605 159 22 57 chr6 22765695 22766009 -159649233 - AluJo SINE Alu -9 303 1 1828 162 97 43 chr6 22766096 22766466 -159648776 + MLT1B LTR MaLR 1 390 0 248 199 103 73 chr6 22766607 22766743 -159648499 - L1MEd LINE L1 -5932 187 48 370 323 10 0 chr6 22766874 22766973 -159648269 - MIR SINE MIR -59 149 50 1975 138 0 7 chr6 22767042 22767340 -159647902 + AluJb SINE Alu 1 296 -16 23 0 0 0 chr6 22767340 22767363 -159647879 + AT_rich Low_complexity Low_complexity 1 23 0 1802 128 0 36 chr6 22768552 22768868 -159646374 + AluSx SINE Alu 21 326 0 925 157 30 12 chr6 22768873 22769039 -159646203 + L1MB2 LINE L1 6001 6169 -2 272 89 0 22 chr6 22769109 22769154 -159646088 + (TA)n Simple_repeat Simple_repeat 2 45 0 1847 128 53 0 chr6 22770348 22770614 -159644628 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr6 22770615 22770647 -159644595 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7476 59 1 1 chr6 22770950 22772661 -159642581 + L1PA7 LINE L1 4444 6154 0 423 261 157 7 chr6 22772722 22772875 -159642367 - MIR SINE MIR -41 221 46 216 0 0 0 chr6 22772932 22772956 -159642286 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 256 271 14 0 chr6 22773033 22773103 -159642139 + MER63 DNA MER1_type 983 1053 -7 1504 200 77 69 chr6 22773362 22773874 -159641368 + MER39 LTR ERV1 1 666 0 2101 118 6 40 chr6 22773921 22774244 -159640998 - AluSx SINE Alu 0 312 1 26 0 0 0 chr6 22774942 22774968 -159640274 + AT_rich Low_complexity Low_complexity 1 26 0 2308 89 0 0 chr6 22774968 22775259 -159639983 - AluSx SINE Alu -21 291 1 213 196 0 0 chr6 22775890 22775936 -159639306 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2518 74 3 0 chr6 22775980 22776292 -159638950 - AluSp SINE Alu 0 313 1 23 54 0 0 chr6 22776306 22776343 -159638899 + AT_rich Low_complexity Low_complexity 1 37 0 2059 121 30 0 chr6 22776399 22776696 -159638546 - AluSx SINE Alu -6 306 1 277 257 125 28 chr6 22776696 22776840 -159638402 - L1ME4a LINE L1 -1 6120 5963 4903 104 32 96 chr6 22777159 22777712 -159637530 - Tigger3(Golem) DNA MER2_type -2 3027 2440 2184 89 0 7 chr6 22777712 22777993 -159637249 - AluSx SINE Alu -33 279 1 4903 104 32 96 chr6 22777993 22778418 -159636824 - Tigger3(Golem) DNA MER2_type -589 2440 1989 2144 118 3 3 chr6 22778418 22778714 -159636528 - AluSc SINE Alu -13 296 1 4903 104 32 96 chr6 22778714 22779041 -159636201 - Tigger3(Golem) DNA MER2_type -1040 1989 1 298 273 39 47 chr6 22779079 22779207 -159636035 - L2 LINE L2 0 3313 3187 827 261 103 27 chr6 22779207 22779655 -159635587 + L1MC/D LINE L1 5312 5799 -443 2284 110 44 99 chr6 22779704 22779978 -159635264 + LTR23 LTR ERV1 1 289 -148 2149 115 0 7 chr6 22779978 22780274 -159634968 - AluSx SINE Alu -18 294 1 2284 110 44 99 chr6 22780274 22780306 -159634936 + LTR23 LTR ERV1 289 321 -116 2215 90 4 0 chr6 22780306 22780585 -159634657 + AluSp SINE Alu 1 280 -33 194 0 0 37 chr6 22780585 22780612 -159634630 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2301 98 3 10 chr6 22780621 22780928 -159634314 + AluSx SINE Alu 1 305 -7 2284 110 44 99 chr6 22780928 22781063 -159634179 + LTR23 LTR ERV1 328 429 -8 1262 229 95 23 chr6 22781113 22781486 -159633756 + MER39 LTR ERV1 6 351 -356 201 39 0 0 chr6 22781486 22781512 -159633730 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1262 229 95 23 chr6 22781512 22781576 -159633666 + MER39 LTR ERV1 351 707 0 2209 97 0 3 chr6 22782055 22782364 -159632878 - AluSq SINE Alu -5 308 1 26 23 0 23 chr6 22782432 22782451 -159632791 + AT_rich Low_complexity Low_complexity 1 19 -24 2132 100 0 3 chr6 22782451 22782742 -159632500 + AluSc SINE Alu 1 290 -19 26 23 0 23 chr6 22782742 22782766 -159632476 + AT_rich Low_complexity Low_complexity 19 43 0 274 375 7 7 chr6 22782838 22782974 -159632268 + MIR SINE MIR 109 244 -18 192 77 0 0 chr6 22783576 22783602 -159631640 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 1744 46 0 5 chr6 22784299 22784518 -159630724 + AluY SINE Alu 94 311 0 328 281 44 18 chr6 22785059 22785173 -159630069 - MIR SINE MIR -76 186 70 246 316 31 31 chr6 22785235 22785333 -159629909 - MIR3 SINE MIR -103 105 8 1435 119 0 0 chr6 22786057 22786258 -159628984 - AluJb SINE Alu -16 296 96 2322 69 0 3 chr6 22787954 22788259 -159626983 + AluY SINE Alu 1 304 -7 722 213 103 103 chr6 22788764 22789074 -159626168 + MLT1A2 LTR MaLR 3 312 -62 750 227 0 0 chr6 22789095 22789374 -159625868 + CT-rich Low_complexity Low_complexity 1 279 0 1483 153 40 11 chr6 22789419 22789694 -159625548 - AluJo SINE Alu -17 295 13 369 113 4 0 chr6 22789694 22789766 -159625476 + MSTB2 LTR MaLR 356 438 0 1007 276 98 19 chr6 22790057 22790485 -159624757 - MLT1C LTR MaLR 0 467 6 22 35 0 0 chr6 22790615 22790644 -159624598 + AT_rich Low_complexity Low_complexity 1 29 0 2030 93 4 0 chr6 22790645 22790772 -159624470 - L1PB2 LINE L1 -5 6146 6020 3858 121 32 6 chr6 22790772 22791486 -159623756 - L1PB2 LINE L1 -137 6017 5254 243 0 0 0 chr6 22792688 22792715 -159622527 + (A)n Simple_repeat Simple_repeat 1 27 0 346 277 126 34 chr6 22793213 22793419 -159621823 + MIR SINE MIR 28 252 -10 1176 224 0 9 chr6 22793442 22793665 -159621577 + MER58A DNA MER1_type 1 221 -3 217 320 82 41 chr6 22795171 22795293 -159619949 + L2 LINE L2 3137 3263 -9 417 198 153 45 chr6 22795552 22795663 -159619579 - MLT1C LTR MaLR 0 467 345 4047 103 2 16 chr6 22795668 22796248 -159618994 + L1PA14 LINE L1 5590 6161 0 21 36 0 0 chr6 22796478 22796506 -159618736 + AT_rich Low_complexity Low_complexity 1 28 0 6962 69 0 9 chr6 22796512 22798082 -159617160 + L1PA6 LINE L1 4586 6147 -7 2268 90 0 6 chr6 22798230 22798542 -159616700 + AluSg SINE Alu 1 310 0 856 272 112 21 chr6 22798549 22798880 -159616362 - MLT1C LTR MaLR -104 363 3 2040 115 13 3 chr6 22799470 22799774 -159615468 + AluSq SINE Alu 1 307 -6 666 41 31 0 chr6 22799797 22799895 -159615347 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 274 347 52 36 chr6 22801370 22801563 -159613679 - MIR SINE MIR -2 260 65 1592 185 7 23 chr6 22801657 22801965 -159613277 - AluJo SINE Alu -9 303 1 504 216 230 34 chr6 22802966 22803114 -159612128 - MER63A DNA MER1_type -33 177 1 1973 144 0 3 chr6 22803319 22803632 -159611610 + AluSx SINE Alu 1 312 0 2322 90 0 0 chr6 22804546 22804847 -159610395 + AluSc SINE Alu 1 301 -8 1259 142 9 32 chr6 22805083 22805302 -159609940 + L1MC1 LINE L1 6112 6325 -8 2075 101 25 0 chr6 22805302 22805588 -159609654 - AluY SINE Alu -18 293 1 1569 137 26 99 chr6 22805824 22806167 -159609075 - AluYb8 SINE Alu 0 318 1 2565 133 54 28 chr6 22807229 22807657 -159607585 - LTR32 LTR ERVL -3 468 30 888 228 20 15 chr6 22807675 22807877 -159607365 - HERVL32 LTR ERVL -1 3417 3215 315 239 37 128 chr6 22807959 22807994 -159607248 - PABL_B-int LTR ERV1 -446 6676 6639 1694 166 7 3 chr6 22807994 22808284 -159606958 - AluJb SINE Alu -21 291 1 315 239 37 128 chr6 22808284 22808357 -159606885 - PABL_B-int LTR ERV1 -483 6639 6578 367 313 84 34 chr6 22808390 22808713 -159606529 - PABL_B-int LTR ERV1 -1091 6665 6327 7298 241 60 70 chr6 22809954 22810157 -159605085 - HERVL32 LTR ERVL -205 3213 3009 2236 93 0 3 chr6 22810157 22810469 -159604773 + AluY SINE Alu 1 311 0 7298 241 60 70 chr6 22810469 22810485 -159604757 - HERVL32 LTR ERVL -409 3009 2994 2284 84 0 0 chr6 22810485 22810782 -159604460 + AluSg SINE Alu 1 297 -13 7298 241 60 70 chr6 22810782 22812995 -159602247 - HERVL32 LTR ERVL -424 2994 1274 312 303 49 56 chr6 22813179 22813341 -159601901 - MER5B DNA MER1_type 0 178 18 3616 51 0 7 chr6 22813343 22813794 -159601448 - LTR7 LTR ERV1 -2 448 1 2457 84 48 13 chr6 22813794 22814173 -159601069 - HERVH LTR ERV1 0 7713 7322 1465 115 18 5 chr6 22814171 22814388 -159600854 - HERVH LTR ERV1 -1894 5819 5600 * 4421 142 3 1 chr6 22814389 22815050 -159600192 - HERVH LTR ERV1 -2564 5149 4488 3598 99 0 6 chr6 22815052 22815557 -159599685 - HERVH LTR ERV1 -3720 3993 3492 1014 113 7 0 chr6 22815547 22815697 -159599545 - HERVH LTR ERV1 -4423 3290 3140 * 21467 92 8 7 chr6 22815676 22818666 -159596576 - HERVH LTR ERV1 -4718 2995 1 3455 50 23 7 chr6 22818668 22819109 -159596133 - LTR7 LTR ERV1 -2 448 1 246 331 54 34 chr6 22821455 22821603 -159593639 - L2 LINE L2 -1011 2303 2153 200 35 35 0 chr6 22821672 22821701 -159593541 + (GA)n Simple_repeat Simple_repeat 1 30 0 466 136 0 91 chr6 22822191 22822301 -159592941 + MER53 DNA DNA 1 100 -89 243 61 0 0 chr6 22824407 22824440 -159590802 + (A)n Simple_repeat Simple_repeat 1 33 0 1969 115 3 3 chr6 22824442 22824728 -159590514 + AluSx SINE Alu 1 286 -26 1983 135 0 3 chr6 22825383 22825686 -159589556 + AluSx SINE Alu 1 302 -10 422 305 14 35 chr6 22825875 22826016 -159589226 - MER5A DNA MER1_type -25 164 27 2139 110 7 10 chr6 22826266 22826576 -159588666 - AluSg SINE Alu -1 309 1 322 224 62 95 chr6 22827125 22827304 -159587938 - MER5A DNA MER1_type -7 182 10 1613 152 50 7 chr6 22828393 22828676 -159586566 - AluJo SINE Alu -17 295 1 185 328 34 42 chr6 22829641 22829760 -159585482 - L2 LINE L2 -906 2408 2291 282 345 45 14 chr6 22829763 22829986 -159585256 - L2 LINE L2 -1135 2179 1950 355 278 22 0 chr6 22830144 22830195 -159585047 - L1MC4 LINE L1 -1339 6703 6648 1913 138 10 16 chr6 22830195 22830500 -159584742 - AluSx SINE Alu -9 303 1 355 278 22 0 chr6 22830500 22830538 -159584704 - L1MC4 LINE L1 -1394 6648 6612 1478 157 82 4 chr6 22830759 22831040 -159584202 + AluJb SINE Alu 1 303 -9 705 182 17 62 chr6 22831046 22831089 -159584153 + L1MB4 LINE L1 6013 6056 -124 2215 111 0 0 chr6 22831089 22831395 -159583847 + AluSq SINE Alu 1 306 -7 705 182 17 62 chr6 22831395 22831527 -159583715 + L1MB4 LINE L1 6056 6180 0 551 294 151 35 chr6 22831702 22832213 -159583029 + L2 LINE L2 2690 3223 -49 180 0 0 0 chr6 22832241 22832261 -159582981 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 319 219 110 0 chr6 22832799 22832881 -159582361 - MIR SINE MIR -16 246 156 183 303 20 40 chr6 22832876 22832975 -159582267 - MIR3 SINE MIR -102 106 10 * 207 0 0 0 chr6 22833450 22833473 -159581769 + (A)n Simple_repeat Simple_repeat 1 23 0 1339 190 0 35 chr6 22834215 22834473 -159580769 + AluJb SINE Alu 1 249 -63 2053 185 101 7 chr6 22834785 22835212 -159580030 - MLT1C LTR MaLR 0 467 1 315 0 0 0 chr6 22835288 22835323 -159579919 + (T)n Simple_repeat Simple_repeat 1 35 0 2570 51 0 3 chr6 22837078 22837389 -159577853 - AluY SINE Alu -1 310 1 2177 165 18 48 chr6 22837719 22837843 -159577399 + L1MA10 LINE L1 5782 5908 -426 2409 110 0 0 chr6 22837843 22838153 -159577089 + AluSg SINE Alu 1 310 0 2177 165 18 48 chr6 22838153 22838465 -159576777 + L1MA10 LINE L1 5908 6205 -129 312 218 30 135 chr6 22838774 22838907 -159576335 - MLT1J LTR MaLR -256 180 35 259 103 0 0 chr6 22839012 22839051 -159576191 + Alu SINE Alu 1 39 -262 2290 96 0 0 chr6 22839051 22839352 -159575890 + AluY SINE Alu 11 311 0 183 114 0 0 chr6 22840799 22840834 -159574408 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2300 115 3 0 chr6 22840934 22841246 -159573996 + AluSq SINE Alu 1 313 0 2623 47 0 0 chr6 22841584 22841884 -159573358 + AluY SINE Alu 1 300 -11 193 257 29 43 chr6 22842017 22842087 -159573155 + L2 LINE L2 2575 2643 -671 2201 156 19 6 chr6 22842089 22842449 -159572793 + MLT1A1 LTR MaLR 1 365 0 847 183 27 32 chr6 22843116 22843135 -159572107 + MER5A DNA MER1_type 1 19 -170 2047 157 30 30 chr6 22843135 22843498 -159571744 - THE1B LTR MaLR -1 363 1 847 183 27 32 chr6 22843498 22843664 -159571578 + MER5A DNA MER1_type 19 185 -4 2296 114 3 0 chr6 22843689 22843997 -159571245 + AluSq SINE Alu 1 309 -4 286 267 145 0 chr6 22844366 22844497 -159570745 + MIR SINE MIR 43 192 -70 1068 156 5 26 chr6 22844674 22844866 -159570376 - MER53 DNA DNA 0 189 2 2281 99 0 3 chr6 22844937 22845229 -159570013 + AluSx SINE Alu 1 291 -21 1962 130 10 7 chr6 22846022 22846321 -159568921 - AluSx SINE Alu -12 300 1 1138 74 0 0 chr6 22846321 22846456 -159568786 - AluSq/x SINE Alu -178 135 1 294 279 70 16 chr6 22848496 22848625 -159566617 - MIR SINE MIR -64 198 63 279 263 141 20 chr6 22848886 22848985 -159566257 - L2 LINE L2 -7 3306 3196 343 246 191 83 chr6 22849162 22849549 -159565693 - LTR67 LTR ERVL -14 543 115 2298 101 0 3 chr6 22849714 22850011 -159565231 + AluSc SINE Alu 1 296 -13 359 82 0 33 chr6 22850273 22850334 -159564908 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 527 306 32 96 chr6 22850337 22850651 -159564591 - L2 LINE L2 -1 3271 2978 4140 134 10 5 chr6 22850688 22851316 -159563926 + MER41B LTR ERV1 5 635 0 280 234 109 31 chr6 22851520 22851648 -159563594 - L2 LINE L2 -581 2733 2596 21 23 0 47 chr6 22851694 22851711 -159563531 + AT_rich Low_complexity Low_complexity 1 17 -24 1968 134 3 3 chr6 22851711 22851995 -159563247 + AluSx SINE Alu 1 284 -28 21 23 0 47 chr6 22851995 22852020 -159563222 + AT_rich Low_complexity Low_complexity 17 41 0 229 237 140 21 chr6 22852156 22852249 -159562993 - L2 LINE L2 -961 2353 2250 25 0 0 0 chr6 22852439 22852464 -159562778 + AT_rich Low_complexity Low_complexity 1 25 0 4160 93 4 7 chr6 22853406 22853962 -159561280 + MER41A LTR ERV1 1 554 0 180 111 0 0 chr6 22854723 22854750 -159560492 + (T)n Simple_repeat Simple_repeat 1 27 0 250 294 37 18 chr6 22855615 22855724 -159559518 + MIR SINE MIR 18 128 -80 2483 90 0 0 chr6 22856230 22856541 -159558701 - AluSx SINE Alu -1 311 1 2213 118 0 0 chr6 22857039 22857335 -159557907 - AluY SINE Alu -15 296 1 282 191 238 48 chr6 22858166 22858292 -159556950 + MLT1L LTR MaLR 131 280 -335 349 316 43 11 chr6 22858359 22858546 -159556696 + MLT1L LTR MaLR 410 602 -13 1946 166 7 0 chr6 22858713 22859009 -159556233 + AluJb SINE Alu 1 298 -14 2316 143 50 31 chr6 22859033 22859227 -159556015 + MSTB LTR MaLR 1 190 -236 2462 99 3 0 chr6 22859227 22859539 -159555703 - AluSp SINE Alu 0 313 1 2316 143 50 31 chr6 22859539 22859762 -159555480 + MSTB LTR MaLR 190 426 0 2222 118 0 0 chr6 22860693 22860989 -159554253 - AluSx SINE Alu -16 296 1 753 235 40 10 chr6 22861299 22861499 -159553743 + MIR SINE MIR 36 241 -21 3936 65 2 0 chr6 22861738 22862233 -159553009 + L1PA8 LINE L1 5677 6172 0 379 233 4 41 chr6 22862300 22862415 -159552827 - HAL1b LINE L1 -806 542 444 242 204 146 58 chr6 22862814 22862854 -159552388 - L1ME2 LINE L1 -1 6163 6128 2124 115 0 16 chr6 22862854 22863158 -159552084 + AluSx SINE Alu 1 299 -13 242 204 146 58 chr6 22863158 22863220 -159552022 - L1ME2 LINE L1 -36 6128 6052 1990 96 4 18 chr6 22863231 22863503 -159551739 + AluSx SINE Alu 1 268 -44 236 343 89 7 chr6 22863831 22864134 -159551108 - L1M4 LINE L1 -2017 4129 3802 756 98 106 0 chr6 22864349 22864472 -159550770 + MER85 DNA T2_type 1 136 -3 313 241 27 33 chr6 22864492 22864598 -159550644 + MIR SINE MIR 37 145 -63 2033 121 72 0 chr6 22866702 22866992 -159548250 + AluSx SINE Alu 1 311 -1 832 266 57 4 chr6 22867234 22867478 -159547764 - MIR SINE MIR 0 262 6 31 20 0 20 chr6 22867768 22867785 -159547457 + AT_rich Low_complexity Low_complexity 1 17 -31 1716 94 5 0 chr6 22867785 22867997 -159547245 + AluSp SINE Alu 75 287 -26 31 20 0 20 chr6 22867997 22868028 -159547214 + AT_rich Low_complexity Low_complexity 17 48 0 2125 130 3 0 chr6 22868610 22868911 -159546331 + AluSq SINE Alu 12 313 0 26 30 0 0 chr6 22869103 22869136 -159546106 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr6 22869235 22869262 -159545980 + AT_rich Low_complexity Low_complexity 1 27 0 1807 180 100 90 chr6 22869864 22870181 -159545061 - MLT2B1 LTR ERVL -3 517 192 2308 116 7 0 chr6 22870181 22870491 -159544751 - AluSx SINE Alu 0 312 1 1807 180 100 90 chr6 22870491 22870685 -159544557 - MLT2B1 LTR ERVL -328 192 1 2402 97 0 0 chr6 22870994 22871303 -159543939 + AluSc SINE Alu 1 309 0 328 316 6 63 chr6 22873512 22873560 -159541682 + L2 LINE L2 2909 2958 -314 3196 44 2 17 chr6 22873560 22873966 -159541276 - L1PA7 LINE L1 -1 6153 5754 328 316 6 63 chr6 22873966 22874075 -159541167 + L2 LINE L2 2958 3057 -215 1270 255 54 26 chr6 22874240 22874703 -159540539 - L1MC4a LINE L1 -1753 6055 5580 5417 130 169 27 chr6 22874709 22875812 -159539430 - MER52C LTR ERV1 -18 1260 2 599 264 146 15 chr6 22875836 22876181 -159539061 - L1M3 LINE L1 -609 5562 5173 2315 116 33 25 chr6 22876892 22877253 -159537989 - THE1B LTR MaLR 0 364 1 1506 252 27 56 chr6 22878180 22878629 -159536613 + MLT1J LTR MaLR 72 507 -4 321 299 15 58 chr6 22879171 22879308 -159535934 - MIR3 SINE MIR -65 143 13 2055 124 0 11 chr6 22879791 22880098 -159535144 - AluSx SINE Alu 0 309 6 2224 109 0 3 chr6 22880111 22880413 -159534829 - AluSg SINE Alu -9 301 1 313 212 24 24 chr6 22880675 22880760 -159534482 - MIR3 SINE MIR -51 157 73 202 0 0 83 chr6 22881502 22881538 -159533704 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 2425 90 0 3 chr6 22881540 22881852 -159533390 - AluY SINE Alu 0 311 1 2301 104 3 0 chr6 22881855 22882152 -159533090 - AluSp SINE Alu -15 298 1 290 116 23 0 chr6 22882978 22883021 -159532221 + MSTA LTR MaLR 1 44 -382 759 116 27 0 chr6 22883021 22883133 -159532109 + AluSq/x SINE Alu 24 138 -174 2018 143 62 0 chr6 22883142 22883464 -159531778 + MSTA LTR MaLR 87 428 0 476 309 88 78 chr6 22883514 22883704 -159531538 + HAL1 LINE L1 121 308 -2199 1706 148 46 11 chr6 22883704 22883988 -159531254 + AluSx SINE Alu 1 294 -18 476 309 88 78 chr6 22883988 22884377 -159530865 + HAL1 LINE L1 308 706 -1801 1475 201 31 109 chr6 22884384 22884542 -159530700 + MLT1D LTR MaLR 26 195 -310 2229 113 0 0 chr6 22884542 22884852 -159530390 - AluSq SINE Alu -3 310 1 1475 201 31 109 chr6 22884852 22884881 -159530361 + MLT1D LTR MaLR 195 225 -280 2169 95 0 3 chr6 22884881 22885176 -159530066 + AluSg SINE Alu 1 294 -16 1475 201 31 109 chr6 22885176 22885284 -159529958 + MLT1D LTR MaLR 225 340 -165 2289 99 0 0 chr6 22885284 22885587 -159529655 + AluSq SINE Alu 1 303 -10 1475 201 31 109 chr6 22885587 22885810 -159529432 + MLT1D LTR MaLR 340 505 0 384 302 126 9 chr6 22885810 22886032 -159529210 + HAL1 LINE L1 706 953 -1554 2143 99 7 0 chr6 22886079 22886381 -159528861 + AluSx SINE Alu 1 304 -8 423 242 57 50 chr6 22886413 22886517 -159528725 + HAL1 LINE L1 961 1063 -1444 1794 116 35 18 chr6 22886517 22886801 -159528441 + AluJo SINE Alu 1 289 -23 423 242 57 50 chr6 22886801 22886977 -159528265 + HAL1 LINE L1 1063 1243 -1264 388 113 0 0 chr6 22886978 22887031 -159528211 + AluSg/x SINE Alu 76 128 -172 2047 130 0 3 chr6 22887031 22887330 -159527912 + AluSx SINE Alu 1 298 -14 1587 52 0 5 chr6 22887428 22887639 -159527603 - AluY SINE Alu -5 306 97 1145 264 143 66 chr6 22887659 22888344 -159526898 + HAL1 LINE L1 1473 2210 -297 1728 229 122 12 chr6 22888376 22888870 -159526372 + MLT1H LTR MaLR 1 548 -1 180 111 0 0 chr6 22888870 22888897 -159526345 + (TG)n Simple_repeat Simple_repeat 2 28 0 1667 87 56 0 chr6 22888956 22889187 -159526055 - AluSx SINE Alu -10 302 59 240 289 142 71 chr6 22939714 22939791 -159475451 + MIR SINE MIR 18 88 -174 1883 122 0 76 chr6 22939791 22939983 -159475259 - AluSx SINE Alu -9 303 145 2350 50 0 31 chr6 22939983 22940304 -159474938 - AluY SINE Alu 0 311 1 1883 122 0 76 chr6 22940304 22940439 -159474803 - AluSx SINE Alu -167 145 1 240 289 142 71 chr6 22940439 22940558 -159474684 + MIR SINE MIR 88 228 -34 1773 160 23 7 chr6 22940808 22941115 -159474127 - AluJb SINE Alu 0 312 1 388 115 33 0 chr6 22942003 22942064 -159473178 + AluS SINE Alu 231 293 -7 230 239 80 45 chr6 22942185 22942273 -159472969 - MIR SINE MIR -62 200 110 189 178 0 0 chr6 22942380 22942425 -159472817 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 22942817 22942850 -159472392 + AT_rich Low_complexity Low_complexity 1 33 0 494 285 39 43 chr6 22943432 22943639 -159471603 - MIR SINE MIR 0 262 57 257 299 0 31 chr6 22944290 22944416 -159470826 - AluSp/q SINE Alu 0 314 192 2059 117 0 10 chr6 22945057 22945356 -159469886 + AluSg SINE Alu 2 297 -13 1777 123 42 3 chr6 22945571 22945855 -159469387 + AluJb SINE Alu 1 295 -17 1948 118 13 13 chr6 22945859 22946165 -159469077 + AluSg SINE Alu 3 308 -2 543 101 0 0 chr6 22946165 22946244 -159468998 + (TA)n Simple_repeat Simple_repeat 1 79 0 28 0 0 0 chr6 22946248 22946276 -159468966 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 22946921 22946942 -159468300 + AT_rich Low_complexity Low_complexity 1 21 0 1998 125 0 6 chr6 22947208 22947519 -159467723 - AluY SINE Alu 0 311 3 1465 167 3 31 chr6 22947526 22947703 -159467539 - AluSx SINE Alu -2 310 144 1564 140 3 13 chr6 22947703 22948010 -159467232 - AluY SINE Alu -3 308 5 1465 167 3 31 chr6 22948010 22948149 -159467093 - AluSx SINE Alu -168 144 3 485 103 0 11 chr6 22949892 22949979 -159465263 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 213 213 0 0 chr6 22949969 22950016 -159465226 + A-rich Low_complexity Low_complexity 1 47 0 * 277 257 0 0 chr6 22950016 22950086 -159465156 + MLT1L LTR MaLR 546 615 0 1887 94 30 40 chr6 22950179 22950476 -159464766 + AluSx SINE Alu 1 294 -18 1126 153 0 48 chr6 22950590 22950799 -159464443 + AluSx SINE Alu 1 199 -113 1955 125 3 0 chr6 22950819 22951115 -159464127 + AluSc SINE Alu 1 297 -12 907 129 7 7 chr6 22951121 22951276 -159463966 + AluSg/x SINE Alu 138 292 -18 1174 217 36 4 chr6 22952504 22952780 -159462462 - AluJo SINE Alu -16 286 2 453 234 126 0 chr6 22952928 22953103 -159462139 + MER5C DNA MER1_type 113 309 -15 515 194 70 74 chr6 22953122 22953240 -159462002 + MER113 DNA MER1_type? 4 121 -400 2161 107 7 0 chr6 22953240 22953539 -159461703 - AluSp SINE Alu -12 301 1 296 48 24 0 chr6 22953546 22953588 -159461654 + (TA)n Simple_repeat Simple_repeat 2 44 0 2491 37 0 3 chr6 22953588 22953888 -159461354 - AluY SINE Alu -12 299 1 515 194 70 74 chr6 22953888 22954002 -159461240 + MER113 DNA MER1_type? 125 244 -277 24 0 0 0 chr6 22954002 22954026 -159461216 + AT_rich Low_complexity Low_complexity 1 24 0 2505 45 3 3 chr6 22954497 22954808 -159460434 - AluY SINE Alu 0 311 1 1944 119 0 0 chr6 22955794 22956072 -159459170 - AluSx SINE Alu 0 312 35 1685 157 54 7 chr6 22956164 22956458 -159458784 + AluJo SINE Alu 1 308 -4 1897 131 3 3 chr6 22956460 22956757 -159458485 + AluSx SINE Alu 1 297 -15 328 194 45 0 chr6 22957006 22957073 -159458169 + LTR16C LTR ERVL 214 283 -208 308 221 13 65 chr6 22957092 22957169 -159458073 - AluS SINE Alu -241 62 3 260 307 157 46 chr6 22957532 22957727 -159457515 + MIR SINE MIR 35 252 -10 1579 100 123 12 chr6 22958420 22958691 -159456551 - AluSg SINE Alu 0 299 1 1114 128 17 0 chr6 22958692 22958872 -159456370 + L1MB3 LINE L1 6000 6182 -1 189 0 0 0 chr6 22958993 22959014 -159456228 + (T)n Simple_repeat Simple_repeat 1 21 0 1966 118 3 47 chr6 22959340 22959526 -159455716 - AluSq SINE Alu -5 308 140 2393 51 0 13 chr6 22959526 22959840 -159455402 - AluY SINE Alu -1 310 1 1966 118 3 47 chr6 22959840 22959975 -159455267 - AluSq SINE Alu -173 140 1 2898 186 6 40 chr6 22960149 22960684 -159454558 - L1MCa LINE L1 -3259 3167 2616 2053 142 0 0 chr6 22960684 22960995 -159454247 + AluSq SINE Alu 1 311 -2 2898 186 6 40 chr6 22960995 22961031 -159454211 - L1MCa LINE L1 -3810 2616 2616 2305 93 0 3 chr6 22961031 22961341 -159453901 + AluSx SINE Alu 2 310 -2 2898 186 6 40 chr6 22961341 22961393 -159453849 - L1MCa LINE L1 -3810 2616 2564 557 212 159 59 chr6 22961560 22961795 -159453447 - MLT1H1 LTR MaLR -11 544 250 698 229 22 18 chr6 22962189 22962412 -159452830 + MER20B DNA MER1_type 544 767 -16 186 283 0 0 chr6 22962779 22962825 -159452417 + L2 LINE L2 3264 3309 -4 279 0 0 0 chr6 22964811 22964842 -159450400 + (T)n Simple_repeat Simple_repeat 1 31 0 530 208 77 24 chr6 22966727 22966895 -159448347 + MER104 DNA MER2_type 1 177 -3 1801 125 27 27 chr6 22967877 22968174 -159447068 - AluSx SINE Alu -15 297 1 410 228 118 24 chr6 22968276 22968403 -159446839 - MIR SINE MIR -7 255 117 239 170 0 19 chr6 22969293 22969346 -159445896 + (CA)n Simple_repeat Simple_repeat 1 52 0 198 71 0 0 chr6 22970111 22970139 -159445103 + (GA)n Simple_repeat Simple_repeat 1 28 0 213 250 0 0 chr6 22970854 22970946 -159444296 + (CGG)n Simple_repeat Simple_repeat 1 92 0 212 241 13 13 chr6 22971065 22971144 -159444098 + (CCG)n Simple_repeat Simple_repeat 1 79 0 209 123 0 53 chr6 22971515 22971572 -159443670 + (TCC)n Simple_repeat Simple_repeat 1 54 0 290 221 12 23 chr6 22971844 22971930 -159443312 + A-rich Low_complexity Low_complexity 5 89 0 297 75 0 0 chr6 22972808 22972848 -159442394 + (A)n Simple_repeat Simple_repeat 1 40 0 313 193 272 9 chr6 22973282 22973396 -159441846 - L1MCa LINE L1 -4065 2361 2218 22 0 0 0 chr6 22973448 22973470 -159441772 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr6 22976629 22976655 -159438587 + AT_rich Low_complexity Low_complexity 1 26 0 2171 110 0 0 chr6 22976671 22976970 -159438272 + AluSx SINE Alu 1 299 -13 268 429 30 5 chr6 22977602 22977805 -159437437 + MIR SINE MIR 47 254 -8 204 235 161 12 chr6 22977806 22977887 -159437355 + MIR SINE MIR 157 249 -13 365 288 159 18 chr6 22978303 22978466 -159436776 + MER5A DNA MER1_type 1 186 -3 246 311 95 34 chr6 22978489 22978637 -159436605 - MIR SINE MIR -78 184 28 1898 133 3 10 chr6 22978805 22979106 -159436136 + AluSq SINE Alu 1 299 -14 279 0 0 0 chr6 22979135 22979166 -159436076 + (TG)n Simple_repeat Simple_repeat 2 32 0 2030 103 3 27 chr6 22981495 22981631 -159433611 + AluSx SINE Alu 1 139 -173 2033 53 0 8 chr6 22981631 22981893 -159433349 + AluY SINE Alu 39 298 -13 2246 98 0 0 chr6 22981895 22982192 -159433050 + AluSc SINE Alu 1 297 -12 2030 103 3 27 chr6 22982192 22982353 -159432889 + AluSx SINE Alu 140 294 -18 1678 163 32 4 chr6 22983581 22983858 -159431384 - AluJb SINE Alu -26 286 2 2261 90 10 0 chr6 22983929 22984219 -159431023 + AluSp SINE Alu 1 293 -20 2280 75 7 0 chr6 22984230 22984534 -159430708 + AluSc SINE Alu 1 306 0 1333 186 80 22 chr6 22984658 22984969 -159430273 + MER61B LTR ERV1 1 421 -4 1501 116 0 18 chr6 22984969 22985194 -159430048 - pTR5 LTR ERV1 -2046 392 172 308 281 10 0 chr6 22985197 22985293 -159429949 - LTR30 LTR ERV1 -80 642 546 4077 128 196 24 chr6 22985299 22986287 -159428955 - pTR5 LTR ERV1 -417 2021 719 450 0 0 0 chr6 22986633 22986683 -159428559 + (CATAA)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr6 22986791 22986820 -159428422 + AT_rich Low_complexity Low_complexity 1 29 0 2331 88 3 3 chr6 22986893 22987189 -159428053 - AluSp SINE Alu -17 296 1 706 170 0 28 chr6 22988719 22988860 -159426382 - MER96B DNA MER1_type? -182 235 99 2175 93 25 0 chr6 22988860 22989140 -159426102 + AluSx SINE Alu 1 287 -25 239 73 59 29 chr6 22989147 22989215 -159426027 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 234 232 18 0 chr6 22989230 22989286 -159425956 - MER96B DNA MER1_type? -320 97 41 309 299 10 99 chr6 22989454 22989655 -159425587 - MER5A DNA MER1_type 0 189 7 333 0 0 0 chr6 22991341 22991378 -159423864 + (CA)n Simple_repeat Simple_repeat 2 38 0 2175 120 7 7 chr6 22992299 22992608 -159422634 - AluSx SINE Alu -3 309 1 414 208 201 19 chr6 22992757 22992793 -159422449 - MIR SINE MIR -9 253 225 204 40 0 0 chr6 22992793 22992818 -159422424 + (TA)n Simple_repeat Simple_repeat 1 25 0 414 208 201 19 chr6 22992818 22992940 -159422302 - MIR SINE MIR -37 225 66 1683 152 61 10 chr6 22992945 22993242 -159422000 + AluJb SINE Alu 1 312 0 1708 161 41 21 chr6 22993416 22993707 -159421535 - AluJb SINE Alu -15 297 1 2153 130 0 7 chr6 22994063 22994364 -159420878 + AluSx SINE Alu 1 299 -13 2325 96 3 3 chr6 22994968 22995269 -159419973 + AluSx SINE Alu 1 301 -11 4348 140 103 14 chr6 22995857 22996750 -159418492 - MER52C LTR ERV1 0 1278 1 1586 181 0 28 chr6 22996953 22997241 -159418001 + AluJo SINE Alu 2 281 -31 189 0 0 0 chr6 22997244 22997265 -159417977 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 519 240 96 7 chr6 22997386 22997532 -159417710 - MLT1L LTR MaLR -36 579 421 2170 132 0 7 chr6 22997717 22998020 -159417222 - AluSx SINE Alu -11 301 1 2282 114 3 0 chr6 22998021 22998320 -159416922 - AluSp SINE Alu -7 306 7 2429 80 0 3 chr6 22998451 22998752 -159416490 + AluY SINE Alu 3 302 -9 2251 123 0 3 chr6 22998977 22999285 -159415957 + AluSx SINE Alu 1 307 -5 673 309 79 70 chr6 22999720 22999814 -159415428 + L2 LINE L2 1841 1933 -1381 1853 176 0 13 chr6 22999814 23000121 -159415121 - AluJo SINE Alu -9 303 1 673 309 79 70 chr6 23000121 23000764 -159414478 + L2 LINE L2 1933 2588 -726 2495 60 0 7 chr6 23000764 23001066 -159414176 + AluY SINE Alu 1 300 -11 673 309 79 70 chr6 23001066 23001138 -159414104 + L2 LINE L2 2588 2658 -656 2253 104 3 3 chr6 23001185 23001482 -159413760 - AluSx SINE Alu -15 297 1 1795 157 54 7 chr6 23001484 23001778 -159413464 - AluJo SINE Alu -4 308 1 2054 116 0 0 chr6 23001870 23002146 -159413096 + AluSx SINE Alu 35 310 -2 2502 65 0 10 chr6 23003132 23003440 -159411802 + AluY SINE Alu 1 305 -6 1696 97 124 16 chr6 23003755 23004012 -159411230 + AluSg SINE Alu 1 285 -25 2202 66 30 20 chr6 23004920 23005222 -159410020 - AluY SINE Alu -5 306 2 614 318 138 17 chr6 23005279 23005429 -159409813 + L2 LINE L2 2434 2564 -749 2354 87 0 10 chr6 23005429 23005740 -159409502 - AluSc SINE Alu -1 308 1 614 318 138 17 chr6 23005740 23006086 -159409156 + L2 LINE L2 2564 3002 -311 253 297 0 69 chr6 23006205 23006306 -159408936 + L2 LINE L2 3218 3311 -2 214 229 0 29 chr6 23006363 23006433 -159408809 + (TA)n Simple_repeat Simple_repeat 2 69 0 2596 55 3 3 chr6 23006529 23006840 -159408402 + AluY SINE Alu 1 311 0 24 0 0 0 chr6 23007311 23007335 -159407907 + AT_rich Low_complexity Low_complexity 1 24 0 545 194 70 74 chr6 23007335 23007449 -159407793 - MER113 DNA MER1_type? -277 244 131 2701 36 0 3 chr6 23007449 23007757 -159407485 + AluY SINE Alu 1 307 -4 440 35 17 0 chr6 23007757 23007815 -159407427 + (TA)n Simple_repeat Simple_repeat 1 59 0 2273 110 7 0 chr6 23007822 23008121 -159407121 + AluSp SINE Alu 1 301 -12 545 194 70 74 chr6 23008121 23008239 -159407003 - MER113 DNA MER1_type? -395 126 4 714 234 122 11 chr6 23008258 23008536 -159406706 - MER5C DNA MER1_type -15 309 1 2128 131 0 3 chr6 23008695 23008993 -159406249 - AluSx SINE Alu -15 297 1 1702 109 4 0 chr6 23009065 23009329 -159405913 + AluSg/x SINE Alu 67 310 0 1237 117 0 0 chr6 23009505 23009676 -159405566 + AluSg/x SINE Alu 134 304 -8 2104 125 3 0 chr6 23009966 23010263 -159404979 - AluSq SINE Alu -15 298 1 2169 126 13 0 chr6 23010924 23011233 -159404009 - AluSq SINE Alu 0 313 1 1585 176 11 21 chr6 23011507 23011791 -159403451 + AluJb SINE Alu 1 281 -31 229 0 26 53 chr6 23011794 23011832 -159403410 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2553 68 0 0 chr6 23011981 23012288 -159402954 + AluSc SINE Alu 1 307 -2 2302 108 0 3 chr6 23012293 23012599 -159402643 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr6 23012872 23012893 -159402349 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr6 23013538 23013566 -159401676 + AT_rich Low_complexity Low_complexity 1 28 0 450 53 0 0 chr6 23013570 23013627 -159401615 + (TA)n Simple_repeat Simple_repeat 2 58 0 2085 117 13 13 chr6 23013629 23013937 -159401305 - AluSg SINE Alu 0 310 3 1835 134 42 3 chr6 23013941 23014225 -159401017 - AluJb SINE Alu -17 295 1 2204 114 0 10 chr6 23014440 23014739 -159400503 - AluSg SINE Alu -13 297 2 551 274 71 63 chr6 23015380 23015609 -159399633 - L1M4 LINE L1 -1983 4163 3937 1883 86 4 0 chr6 23015609 23015874 -159399368 - AluSc SINE Alu 0 312 47 551 274 71 63 chr6 23015874 23016150 -159399092 - L1M4 LINE L1 -2209 3937 3653 2505 67 0 16 chr6 23016172 23016486 -159398756 - AluY SINE Alu -2 309 1 2433 100 0 0 chr6 23016496 23016806 -159398436 - AluSg SINE Alu 0 310 1 871 191 22 16 chr6 23016806 23016981 -159398261 - AluJo SINE Alu -14 298 120 734 170 7 0 chr6 23017057 23017204 -159398038 + CT-rich Low_complexity Low_complexity 1 148 0 1483 131 0 0 chr6 23017204 23017410 -159397832 - AluSg/x SINE Alu -10 302 97 10286 113 26 20 chr6 23017410 23018361 -159396881 + Tigger1 DNA MER2_type 465 1408 -1010 2315 90 0 0 chr6 23018361 23018660 -159396582 - AluY SINE Alu -12 299 1 10286 113 26 20 chr6 23018660 23018924 -159396318 + Tigger1 DNA MER2_type 1408 1669 -749 2141 110 28 0 chr6 23018924 23019214 -159396028 + AluSg SINE Alu 1 298 -12 10286 113 26 20 chr6 23019214 23019580 -159395662 + Tigger1 DNA MER2_type 1669 2058 -360 837 125 16 0 chr6 23019580 23019708 -159395534 - AluSg SINE Alu -7 302 173 952 85 0 0 chr6 23019708 23019826 -159395416 - AluSg SINE Alu -192 118 1 2354 114 29 0 chr6 23019826 23020168 -159395074 + Tigger1 DNA MER2_type 2064 2415 -3 1007 233 8 16 chr6 23020303 23020548 -159394694 - L1M4 LINE L1 -1191 4955 4713 2224 97 30 0 chr6 23020841 23021139 -159394103 + AluSq SINE Alu 1 307 -6 366 302 181 25 chr6 23021161 23021482 -159393760 - L1MDa LINE L1 -4588 1541 1171 36 17 0 35 chr6 23021528 23021568 -159393674 + AT_rich Low_complexity Low_complexity 1 40 -16 2165 116 7 0 chr6 23021568 23021860 -159393382 + AluSg1 SINE Alu 1 294 -15 36 17 0 35 chr6 23021860 23021877 -159393365 + AT_rich Low_complexity Low_complexity 40 56 0 332 281 82 41 chr6 23021896 23021981 -159393261 - L1MDa LINE L1 -4952 1167 1087 2038 141 0 0 chr6 23021981 23022287 -159392955 - AluSg SINE Alu -4 306 1 332 281 82 41 chr6 23022287 23022397 -159392845 - L1MDa LINE L1 -5032 1087 964 484 264 39 8 chr6 23022499 23022628 -159392614 + LTR16C LTR ERVL 151 283 -208 403 194 28 0 chr6 23022651 23022723 -159392519 - AluS SINE Alu -235 76 3 274 305 146 37 chr6 23023085 23023278 -159391964 + MIR SINE MIR 38 249 -13 1786 96 115 11 chr6 23023971 23024241 -159391001 - AluSg SINE Alu -12 298 1 1127 127 16 16 chr6 23024241 23024422 -159390820 + L1MB3 LINE L1 5999 6182 -1 189 0 0 0 chr6 23024542 23024563 -159390679 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 120 3 31 chr6 23024889 23025070 -159390172 - AluSq SINE Alu -5 308 138 2468 49 0 13 chr6 23025070 23025375 -159389867 - AluY SINE Alu -10 301 1 2115 120 3 31 chr6 23025375 23025510 -159389732 - AluSq SINE Alu -175 138 1 292 335 135 16 chr6 23026665 23026969 -159388273 + L3 LINE CR1 496 835 -742 372 259 0 12 chr6 23027035 23027120 -159388122 - L2 LINE L2 -8 3264 3181 2506 114 7 88 chr6 23027159 23027417 -159387825 - MSTA LTR MaLR 0 428 223 2212 86 7 0 chr6 23027417 23027695 -159387547 - AluSp SINE Alu -13 300 21 2506 114 7 88 chr6 23027695 23027901 -159387341 - MSTA LTR MaLR -205 223 2 1241 194 28 127 chr6 23028373 23028635 -159386607 - MLT1B LTR MaLR 0 390 177 2535 59 0 3 chr6 23028635 23028938 -159386304 - AluY SINE Alu -9 302 1 1241 194 28 127 chr6 23028938 23029062 -159386180 - MLT1B LTR MaLR -213 177 42 1839 207 65 59 chr6 23029065 23029558 -159385684 + MLT2B3 LTR ERVL 5 500 -54 4414 105 25 6 chr6 23029568 23030197 -159385045 - LTR9B LTR ERV1 -2 642 2 462 73 12 85 chr6 23030197 23030257 -159384985 + MLT2A2 LTR ERVL 400 453 0 317 128 0 0 chr6 23030257 23030304 -159384938 - MLT1B LTR MaLR -325 49 3 259 274 77 95 chr6 23030305 23030580 -159384662 - L2 LINE L2 -691 2623 2359 2287 84 0 26 chr6 23030580 23030889 -159384353 + AluSx SINE Alu 12 312 0 259 274 77 95 chr6 23030889 23031109 -159384133 - L2 LINE L2 -955 2359 2137 2166 134 0 0 chr6 23031187 23031493 -159383749 + AluSx SINE Alu 1 306 -6 1948 143 26 10 chr6 23033033 23033340 -159381902 + AluJb SINE Alu 1 312 0 181 261 102 83 chr6 23033594 23033718 -159381524 - MIR SINE MIR -26 236 116 2005 118 0 85 chr6 23033718 23033853 -159381389 + AluSx SINE Alu 1 146 -166 2511 47 0 31 chr6 23033853 23034174 -159381068 + AluY SINE Alu 1 311 0 2005 118 0 85 chr6 23034174 23034313 -159380929 + AluSx SINE Alu 145 302 -9 394 91 0 0 chr6 23034313 23034368 -159380874 + Alu SINE Alu 248 302 0 181 261 102 83 chr6 23034369 23034401 -159380841 - MIR SINE MIR -146 116 77 228 320 70 51 chr6 23034494 23034650 -159380592 - L2 LINE L2 -190 3082 2924 2602 42 0 10 chr6 23034941 23035248 -159379994 - AluY SINE Alu -7 304 1 263 248 64 28 chr6 23035407 23035516 -159379726 - MIR SINE MIR -26 236 124 2361 93 0 13 chr6 23035701 23036013 -159379229 - AluSg SINE Alu -2 308 1 1282 170 15 104 chr6 23036037 23036216 -159379026 - AluJo SINE Alu -6 306 169 192 77 0 0 chr6 23036216 23036242 -159379000 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1282 170 15 104 chr6 23036242 23036398 -159378844 - AluJo SINE Alu -143 169 1 222 37 0 0 chr6 23036400 23036427 -159378815 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2355 60 7 0 chr6 23036429 23036712 -159378530 - AluY SINE Alu -26 285 1 507 50 0 0 chr6 23036713 23036773 -159378469 - AluSq/x SINE Alu -168 145 86 1103 178 35 0 chr6 23036775 23036972 -159378270 - AluSx SINE Alu -108 204 1 335 296 56 0 chr6 23037197 23037305 -159377937 - MLT1I LTR MaLR -6 403 290 822 238 48 19 chr6 23037351 23037561 -159377681 - MLT1I LTR MaLR -192 217 2 2486 87 0 0 chr6 23037727 23038037 -159377205 + AluSx SINE Alu 1 310 -2 897 211 43 142 chr6 23038514 23038817 -159376425 - LTR16C LTR ERVL -2 489 240 2185 123 0 3 chr6 23038817 23039117 -159376125 - AluSx SINE Alu -13 299 1 897 211 43 142 chr6 23039117 23039250 -159375992 - LTR16C LTR ERVL -251 240 96 196 183 17 17 chr6 23042203 23042263 -159372979 + GA-rich Low_complexity Low_complexity 2 61 0 2359 95 10 0 chr6 23043655 23043959 -159371283 + AluSx SINE Alu 1 307 -5 262 311 20 22 chr6 23045570 23045710 -159369532 + MIR SINE MIR 63 199 -9 2349 94 3 0 chr6 23045798 23046106 -159369136 - AluSq SINE Alu -4 309 1 342 274 62 20 chr6 23046413 23046559 -159368683 + MIR SINE MIR 29 180 -82 2467 72 3 0 chr6 23047824 23048130 -159367112 - AluSp SINE Alu -6 307 1 2282 89 3 32 chr6 23048291 23048606 -159366636 - AluSg SINE Alu -4 306 1 2027 265 150 26 chr6 23048740 23049638 -159365604 - L2 LINE L2 0 3313 2216 2103 104 3 7 chr6 23049638 23049936 -159365306 - AluSx SINE Alu -15 297 1 2027 265 150 26 chr6 23049936 23050343 -159364899 - L2 LINE L2 -1097 2216 1861 2453 62 0 23 chr6 23050404 23050708 -159364534 + AluY SINE Alu 1 297 -14 230 344 15 15 chr6 23050753 23050884 -159364358 - MIR SINE MIR -50 212 82 2449 101 0 0 chr6 23051285 23051593 -159363649 - AluSg SINE Alu -2 308 1 2415 76 9 22 chr6 23051598 23051913 -159363329 - AluY SINE Alu 0 311 1 1192 139 10 57 chr6 23051933 23052142 -159363100 - AluSx SINE Alu -113 199 1 2039 97 27 40 chr6 23052256 23052554 -159362688 - AluSx SINE Alu -18 294 1 264 271 0 0 chr6 23052647 23052717 -159362525 - MLT1L LTR MaLR 0 615 546 221 189 0 0 chr6 23052717 23052754 -159362488 + T-rich Low_complexity Low_complexity 1 37 0 891 61 0 55 chr6 23052754 23052917 -159362325 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 255 271 17 0 chr6 23052937 23052996 -159362246 - MLT1L LTR MaLR -91 524 465 2223 104 0 13 chr6 23053044 23053342 -159361900 - AluSg1 SINE Alu -15 294 1 2005 222 22 89 chr6 23053376 23053463 -159361779 - L1MB7 LINE L1 -46 6138 6047 2551 74 0 0 chr6 23053463 23053772 -159361470 - AluY SINE Alu -2 309 1 2005 222 22 89 chr6 23053772 23054159 -159361083 - L1MB7 LINE L1 -137 6047 5636 2004 149 0 3 chr6 23054159 23054455 -159360787 + AluJb SINE Alu 1 295 -17 2005 222 22 89 chr6 23054455 23054547 -159360695 - L1MB7 LINE L1 -548 5636 5622 2351 105 0 6 chr6 23054547 23054862 -159360380 - AluSq SINE Alu 0 313 1 2005 222 22 89 chr6 23054862 23054977 -159360265 - L1MB7 LINE L1 -562 5622 5501 180 0 0 0 chr6 23055301 23055321 -159359921 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2261 89 0 0 chr6 23055321 23055601 -159359641 - AluSx SINE Alu -32 280 1 869 136 0 29 chr6 23055704 23055844 -159359398 + AluJb SINE Alu 1 136 -176 1668 171 19 23 chr6 23056574 23056884 -159358358 - AluJb SINE Alu -3 309 1 2277 113 3 0 chr6 23056979 23057280 -159357962 - AluSq SINE Alu -11 302 1 278 359 47 0 chr6 23057405 23057533 -159357709 - MIR SINE MIR -61 201 68 2591 71 0 0 chr6 23057745 23058056 -159357186 - AluY SINE Alu 0 311 1 1870 162 0 40 chr6 23058539 23058860 -159356382 - AluJo SINE Alu -4 308 1 2338 76 0 3 chr6 23058880 23059168 -159356074 - AluY SINE Alu -23 288 2 2171 117 0 0 chr6 23059327 23059610 -159355632 + AluSq SINE Alu 1 283 -30 37 39 0 0 chr6 23059614 23059665 -159355577 + AT_rich Low_complexity Low_complexity 1 51 0 2481 78 0 3 chr6 23059962 23060271 -159354971 + AluSg SINE Alu 1 308 -2 3362 113 14 67 chr6 23061593 23062149 -159353093 + MER1A DNA MER1_type 1 527 0 353 74 0 0 chr6 23062226 23062280 -159352962 - Alu SINE Alu 0 301 248 261 83 0 0 chr6 23062282 23062318 -159352924 + (A)n Simple_repeat Simple_repeat 1 36 0 1252 132 0 0 chr6 23062318 23062500 -159352742 + AluSg/x SINE Alu 129 310 -2 241 216 128 49 chr6 23062522 23062624 -159352618 - MER103 DNA DNA -14 152 43 2255 101 0 7 chr6 23063008 23063305 -159351937 + AluSc SINE Alu 1 295 -14 1089 203 198 44 chr6 23063652 23064086 -159351156 + MLT1D LTR MaLR 5 505 0 2751 36 0 0 chr6 23064440 23064747 -159350495 + AluY SINE Alu 1 307 -4 778 88 18 0 chr6 23065425 23065539 -159349703 - LTR9B LTR ERV1 -87 557 442 250 113 0 75 chr6 23066051 23066104 -159349138 + L2 LINE L2 3265 3313 0 996 151 158 58 chr6 23066240 23066531 -159348711 - MER33 DNA MER1_type 0 324 5 296 159 0 29 chr6 23066769 23066838 -159348404 + MIR SINE MIR 82 148 -114 2384 104 0 0 chr6 23066876 23067184 -159348058 - AluSx SINE Alu -4 308 1 2330 97 0 0 chr6 23069313 23069602 -159345640 - AluSc SINE Alu -20 289 1 835 123 0 0 chr6 23070616 23070738 -159344504 - MER41A LTR ERV1 0 554 433 1092 62 8 0 chr6 23070738 23070867 -159344375 + AluSq/x SINE Alu 3 132 -180 2386 95 0 3 chr6 23070869 23071175 -159344067 + AluSq SINE Alu 1 305 -8 2258 117 3 0 chr6 23071188 23071487 -159343755 + AluSx SINE Alu 1 300 -12 1181 106 6 0 chr6 23071489 23071650 -159343592 - MER41B LTR ERV1 -111 524 363 1621 125 20 128 chr6 23071650 23071995 -159343247 - AluYb8 SINE Alu 0 308 1 2141 131 0 10 chr6 23071995 23072300 -159342942 - AluSq SINE Alu -11 302 1 1978 128 82 33 chr6 23073395 23073469 -159341773 - MLT1B LTR MaLR -2 388 319 2196 94 3 7 chr6 23073469 23073757 -159341485 + AluSq SINE Alu 1 287 -26 1978 128 82 33 chr6 23073757 23074050 -159341192 - MLT1B LTR MaLR -71 319 3 2152 124 0 0 chr6 23074464 23074755 -159340487 - AluSx SINE Alu -21 291 1 1148 240 146 28 chr6 23074761 23075186 -159340056 - L1ME3A LINE L1 -5 6165 5691 1028 228 64 38 chr6 23075201 23075422 -159339820 - L1MA7 LINE L1 -4 6287 6073 2394 69 0 20 chr6 23075422 23075728 -159339514 - AluY SINE Alu -11 300 1 1028 228 64 38 chr6 23075728 23075932 -159339310 - L1MA7 LINE L1 -218 6073 5346 860 171 13 7 chr6 23075956 23076108 -159339134 + AluJb SINE Alu 140 292 -20 749 62 31 0 chr6 23076108 23076237 -159339005 + (TA)n Simple_repeat Simple_repeat 1 133 0 325 172 78 0 chr6 23076391 23076455 -159338787 - MER94 DNA DNA -65 69 1 267 347 97 0 chr6 23076510 23076634 -159338608 - L2 LINE L2 0 3272 3137 2305 101 3 0 chr6 23076645 23076941 -159338301 - AluSp SINE Alu -16 297 1 2336 56 62 0 chr6 23076941 23077229 -159338013 - AluY SINE Alu -5 306 1 213 250 14 83 chr6 23077788 23077860 -159337382 + L2 LINE L2 3204 3270 -2 2235 87 0 45 chr6 23077878 23078022 -159337220 + AluSx SINE Alu 3 127 -185 2382 59 31 0 chr6 23078022 23078309 -159336933 + AluY SINE Alu 2 297 -14 2235 87 0 45 chr6 23078309 23078474 -159336768 + AluSx SINE Alu 127 298 -14 365 291 12 42 chr6 23078720 23078885 -159336357 - L2 LINE L2 -205 3067 2908 2623 193 54 51 chr6 23079068 23079933 -159335309 + L1MC5 LINE L1 6990 7913 -48 26 50 0 0 chr6 23080068 23080108 -159335134 + AT_rich Low_complexity Low_complexity 1 40 0 322 224 43 26 chr6 23080151 23080267 -159334975 - L1ME4a LINE L1 -21 6100 5983 22 56 0 0 chr6 23080280 23080316 -159334926 + AT_rich Low_complexity Low_complexity 1 36 0 563 295 91 42 chr6 23080328 23080615 -159334627 - L1ME4a LINE L1 -233 5888 5616 2586 46 0 13 chr6 23080615 23080922 -159334320 - AluY SINE Alu -8 303 1 563 295 91 42 chr6 23080922 23081227 -159334015 - L1ME4a LINE L1 -505 5616 5267 2171 112 0 0 chr6 23081320 23081598 -159333644 + AluSx SINE Alu 2 279 -33 207 0 0 0 chr6 23081598 23081621 -159333621 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr6 23081622 23081657 -159333585 + AT_rich Low_complexity Low_complexity 1 35 0 298 210 25 62 chr6 23082591 23082672 -159332570 + MIR SINE MIR 44 121 -87 2150 118 10 0 chr6 23082712 23083017 -159332225 - AluSq SINE Alu -5 308 1 1773 175 45 0 chr6 23083114 23083400 -159331842 + AluJo SINE Alu 1 299 -13 2470 77 0 13 chr6 23084708 23085021 -159330221 + AluY SINE Alu 1 309 -2 1955 128 48 0 chr6 23085174 23085463 -159329779 - AluSx SINE Alu -9 303 1 2465 77 0 3 chr6 23085598 23085898 -159329344 + AluSg SINE Alu 1 299 -11 365 233 23 0 chr6 23087324 23087410 -159327832 + L2 LINE L2 3223 3310 -3 21 0 0 0 chr6 23087614 23087635 -159327607 + AT_rich Low_complexity Low_complexity 1 21 0 2067 111 4 4 chr6 23087702 23088015 -159327227 - AluSg SINE Alu 0 313 1 232 135 0 0 chr6 23088015 23088052 -159327190 + Alu SINE Alu 201 237 -65 213 339 34 34 chr6 23088302 23088420 -159326822 - L2 LINE L2 0 3272 3155 371 280 103 40 chr6 23088463 23088638 -159326604 - MIR SINE MIR -6 256 71 3915 159 66 22 chr6 23089265 23089767 -159325475 - L1MB1 LINE L1 -1 6167 5620 1258 224 53 30 chr6 23089767 23090071 -159325171 + AluJo SINE Alu 1 311 -1 3915 159 66 22 chr6 23090071 23090310 -159324932 - L1MB1 LINE L1 -548 5620 5393 1053 202 0 5 chr6 23090304 23090522 -159324720 + L1MB1 LINE L1 5150 5366 -780 * 2286 95 3 7 chr6 23090522 23090826 -159324416 + AluSg SINE Alu 1 303 -7 202 273 106 0 chr6 23091566 23091632 -159323610 - MIR3 SINE MIR -43 165 93 2307 109 3 0 chr6 23091791 23092102 -159323140 - AluSp SINE Alu -1 312 1 2272 99 3 0 chr6 23092787 23093080 -159322162 + AluSp SINE Alu 1 294 -19 1966 105 30 20 chr6 23093092 23093220 -159322022 + AluSq SINE Alu 1 126 -187 2414 78 0 7 chr6 23093220 23093527 -159321715 + AluSg1 SINE Alu 1 305 -4 1966 105 30 20 chr6 23093527 23093693 -159321549 + AluSq SINE Alu 126 298 -15 3941 159 56 27 chr6 23093759 23094270 -159320972 - MER4E LTR ERV1 -4 775 280 180 0 0 0 chr6 23094270 23094290 -159320952 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 567 53 0 0 chr6 23094289 23094364 -159320878 + (CA)n Simple_repeat Simple_repeat 1 75 0 3941 159 56 27 chr6 23094290 23094600 -159320642 - MER4E LTR ERV1 -499 280 6 846 239 0 0 chr6 23094740 23094899 -159320343 - FRAM SINE Alu -18 158 1 1741 218 44 36 chr6 23095005 23095500 -159319742 - MLT1D LTR MaLR 0 505 7 2418 79 10 0 chr6 23095802 23096107 -159319135 + AluSx SINE Alu 1 308 -4 551 253 41 57 chr6 23096205 23096399 -159318843 + MIR SINE MIR 72 262 0 1917 91 0 0 chr6 23096702 23096945 -159318297 - AluSx SINE Alu -69 243 1 2253 84 0 11 chr6 23097457 23097774 -159317468 - AluSq SINE Alu 0 314 1 1483 116 116 4 chr6 23097779 23098012 -159317230 - AluSx SINE Alu -18 294 36 1364 176 11 22 chr6 23098319 23098586 -159316656 - MER61B LTR ERV1 -29 396 133 2358 85 0 13 chr6 23098861 23099168 -159316074 - AluSq SINE Alu -9 304 2 246 240 160 0 chr6 23099752 23099827 -159315415 + MIR3 SINE MIR 115 201 -7 204 40 0 0 chr6 23100467 23100492 -159314750 + (T)n Simple_repeat Simple_repeat 1 25 0 2405 92 0 0 chr6 23100661 23100964 -159314278 - AluSq SINE Alu -10 303 1 2371 92 0 7 chr6 23101672 23101977 -159313265 + AluSc SINE Alu 1 303 -6 300 137 0 0 chr6 23101978 23102029 -159313213 + (CA)n Simple_repeat Simple_repeat 2 52 0 1112 155 0 34 chr6 23102128 23102335 -159312907 - AluJo SINE Alu -24 288 89 1884 92 99 34 chr6 23103460 23103753 -159311489 - AluSx SINE Alu 0 312 1 2191 84 0 11 chr6 23104236 23104521 -159310721 + AluSx SINE Alu 1 282 -30 554 118 13 0 chr6 23104521 23104597 -159310645 - AluS SINE Alu -231 78 2 258 120 0 0 chr6 23104610 23104653 -159310589 + (A)n Simple_repeat Simple_repeat 1 46 -4 2472 60 0 16 chr6 23104653 23104969 -159310273 + AluY SINE Alu 1 311 0 258 120 0 0 chr6 23104969 23104975 -159310267 + (A)n Simple_repeat Simple_repeat 45 50 0 847 180 20 20 chr6 23105034 23105184 -159310058 + FRAM SINE Alu 6 155 -21 2362 88 0 7 chr6 23106109 23106414 -159308828 - AluSp SINE Alu -10 303 1 2065 135 27 0 chr6 23106809 23107106 -159308136 - AluSx SINE Alu -3 309 5 258 259 0 37 chr6 23107238 23107319 -159307923 - MIR SINE MIR -73 135 58 1029 115 0 19 chr6 23107933 23108089 -159307153 - L1MB3 LINE L1 -1 6182 6030 2275 89 7 0 chr6 23108140 23108431 -159306811 + AluSg SINE Alu 1 293 -17 250 261 91 0 chr6 23108542 23108630 -159306612 - MIR SINE MIR -51 211 116 189 178 0 0 chr6 23108747 23108792 -159306450 + (CTAG)n Simple_repeat Simple_repeat 1 45 0 26 30 0 0 chr6 23109184 23109217 -159306025 + AT_rich Low_complexity Low_complexity 1 33 0 626 222 43 48 chr6 23109799 23110006 -159305236 - MIR SINE MIR 0 262 57 2357 67 3 0 chr6 23110657 23110970 -159304272 - AluSp SINE Alu 0 314 1 2284 93 10 0 chr6 23111147 23111437 -159303805 + AluSx SINE Alu 1 293 -19 2285 80 10 0 chr6 23112561 23112850 -159302392 - AluSg1 SINE Alu -17 292 1 185 319 57 71 chr6 23113183 23113324 -159301918 + L2 LINE L2 3172 3310 -3 1225 143 46 97 chr6 23113874 23114133 -159301109 + AluJb SINE Alu 67 312 0 24 53 0 0 chr6 23114937 23114975 -159300267 + AT_rich Low_complexity Low_complexity 1 38 0 200 200 0 0 chr6 23115031 23115066 -159300176 - L2 LINE L2 -12 3301 3267 548 277 55 118 chr6 23115190 23115519 -159299723 - L2 LINE L2 -1 3271 2964 550 305 26 13 chr6 23115757 23115983 -159299259 - L2 LINE L2 -599 2715 2487 21 0 0 0 chr6 23116066 23116087 -159299155 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 23116664 23116692 -159298550 + AT_rich Low_complexity Low_complexity 1 28 0 192 273 0 0 chr6 23118826 23118881 -159296361 + L3b LINE CR1 1383 1437 -146 2190 94 0 52 chr6 23119066 23119394 -159295848 - AluSq SINE Alu -2 311 1 2147 117 0 0 chr6 23119405 23119705 -159295537 - AluY SINE Alu -11 300 1 2051 89 32 3 chr6 23119841 23120123 -159295119 - AluSg SINE Alu -19 291 2 198 328 0 33 chr6 23120225 23120286 -159294956 - L2 LINE L2 -30 3242 3184 1882 142 3 32 chr6 23120480 23120791 -159294451 - AluJo SINE Alu -8 304 3 1186 145 0 0 chr6 23121128 23121300 -159293942 + AluJb SINE Alu 130 301 -11 255 263 13 125 chr6 23121596 23121748 -159293494 + L2 LINE L2 2916 3050 -222 907 240 59 125 chr6 23121783 23122019 -159293223 - LTR67 LTR ERVL 0 557 307 2211 121 0 13 chr6 23122019 23122196 -159293046 - AluSx SINE Alu -2 310 137 2626 45 3 3 chr6 23122196 23122506 -159292736 - AluY SINE Alu -1 310 1 2211 121 0 13 chr6 23122506 23122642 -159292600 - AluSx SINE Alu -175 137 1 907 240 59 125 chr6 23122642 23122997 -159292245 - LTR67 LTR ERVL -250 307 5 261 182 55 0 chr6 23123042 23123097 -159292145 + MIR SINE MIR 156 213 -49 27 0 0 0 chr6 23125006 23125033 -159290209 + AT_rich Low_complexity Low_complexity 1 27 0 306 237 148 15 chr6 23126814 23126949 -159288293 - L1ME4a LINE L1 -1 6189 6037 711 258 140 56 chr6 23127284 23127476 -159287766 - L1ME4a LINE L1 -223 6016 5842 930 265 185 35 chr6 23127476 23127903 -159287339 + LTR16C LTR ERVL 1 491 0 711 258 140 56 chr6 23127903 23128282 -159286960 - L1ME4a LINE L1 -397 5842 5352 804 177 23 0 chr6 23128282 23128412 -159286830 - FLAM_A SINE Alu 0 133 1 711 258 140 56 chr6 23128412 23128542 -159286700 - L1ME4a LINE L1 -887 5352 5234 2393 85 0 0 chr6 23128562 23128856 -159286386 - AluSx SINE Alu -17 295 2 405 202 0 11 chr6 23128913 23129007 -159286235 - L1ME4a LINE L1 -4107 2289 2197 282 178 0 0 chr6 23129009 23129063 -159286179 - Alu SINE Alu -263 39 1 302 45 0 136 chr6 23130323 23130340 -159284902 + L1MB3 LINE L1 6127 6145 -38 1972 123 16 52 chr6 23130340 23130650 -159284592 - AluSg SINE Alu -11 299 1 302 45 0 136 chr6 23130650 23130698 -159284544 + L1MB3 LINE L1 6145 6183 0 363 366 65 5 chr6 23130982 23131198 -159284044 - MIR SINE MIR -14 248 20 287 321 0 27 chr6 23131335 23131447 -159283795 - L2 LINE L2 -1 3312 3204 2423 87 0 0 chr6 23131651 23131961 -159283281 + AluSg SINE Alu 1 310 0 876 202 40 15 chr6 23131966 23132164 -159283078 + MER82 DNA MER2_type 5 207 -446 21 82 0 0 chr6 23132166 23132215 -159283027 + AT_rich Low_complexity Low_complexity 1 49 0 2209 215 35 20 chr6 23132220 23132675 -159282567 + MER82 DNA MER2_type 191 652 -1 544 302 26 16 chr6 23132775 23132964 -159282278 - L2 LINE L2 -248 3065 2875 1999 81 23 8 chr6 23133442 23133702 -159281540 - AluSx SINE Alu -48 264 1 2380 63 0 47 chr6 23133715 23134033 -159281209 - AluY SINE Alu -7 304 2 2420 62 10 19 chr6 23134040 23134348 -159280894 - AluY SINE Alu -6 305 1 2174 85 61 0 chr6 23135006 23135299 -159279943 - AluSp SINE Alu -2 311 1 1817 157 3 14 chr6 23135493 23135787 -159279455 - AluJo SINE Alu -19 293 3 37 23 0 0 chr6 23136723 23136767 -159278475 + AT_rich Low_complexity Low_complexity 1 44 0 4583 137 50 61 chr6 23136815 23138285 -159276957 + pTR5 LTR ERV1 741 2438 0 2061 77 0 0 chr6 23138342 23138602 -159276640 + AluY SINE Alu 1 260 -51 333 0 0 0 chr6 23138647 23138684 -159276558 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1929 146 17 3 chr6 23139083 23139247 -159275995 - AluSx SINE Alu -7 305 134 2024 124 10 13 chr6 23139247 23139545 -159275697 - AluSx SINE Alu -15 297 1 1929 146 17 3 chr6 23139545 23139681 -159275561 - AluSx SINE Alu -178 134 1 23 54 0 0 chr6 23139686 23139723 -159275519 + AT_rich Low_complexity Low_complexity 1 37 0 2142 116 3 0 chr6 23139935 23140229 -159275013 - AluSx SINE Alu -11 301 7 1066 177 0 58 chr6 23140493 23140719 -159274523 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr6 23141715 23141740 -159273502 + AT_rich Low_complexity Low_complexity 1 25 0 1106 196 0 24 chr6 23141741 23141950 -159273292 - AluJo SINE Alu -23 289 86 2281 107 0 3 chr6 23142114 23142424 -159272818 - AluSc SINE Alu 0 309 1 2263 109 0 3 chr6 23142918 23143220 -159272022 + AluSx SINE Alu 1 301 -11 193 222 0 0 chr6 23144421 23144466 -159270776 - L2 LINE L2 -5 3308 3264 2502 57 0 10 chr6 23146345 23146644 -159268598 + AluY SINE Alu 1 296 -15 306 0 0 0 chr6 23146645 23146679 -159268563 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr6 23146678 23146707 -159268535 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 476 356 50 19 chr6 23147084 23147404 -159267838 + L3 LINE CR1 1147 1476 -101 23 33 0 0 chr6 23148115 23148145 -159267097 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 81 72 chr6 23149260 23149371 -159265871 + L2 LINE L2 3160 3271 -1 1896 127 11 14 chr6 23149689 23149873 -159265369 - AluSc SINE Alu 0 318 134 2452 58 0 26 chr6 23149873 23150181 -159265061 - AluY SINE Alu -11 300 1 1896 127 11 14 chr6 23150181 23150315 -159264927 - AluSc SINE Alu -184 134 1 285 275 14 0 chr6 23150340 23150409 -159264833 + CT-rich Low_complexity Low_complexity 3 72 0 602 244 0 0 chr6 23150490 23150609 -159264633 + FLAM_A SINE Alu 8 126 -16 777 132 0 90 chr6 23151121 23151151 -159264091 - FLAM_C SINE Alu -169 133 102 1599 133 182 0 chr6 23151151 23151415 -159263827 + AluSx SINE Alu 1 312 0 777 132 0 90 chr6 23151415 23151528 -159263714 - FLAM_C SINE Alu -200 102 3 35 0 0 0 chr6 23152098 23152133 -159263109 + AT_rich Low_complexity Low_complexity 1 35 0 2110 84 40 0 chr6 23152138 23152412 -159262830 - AluSg SINE Alu -25 285 1 1184 68 0 20 chr6 23152412 23152558 -159262684 - AluSq/x SINE Alu -170 143 1 524 315 72 21 chr6 23152681 23152960 -159262282 - L2 LINE L2 -2 3311 3019 2228 128 0 0 chr6 23153249 23153562 -159261680 - AluSq SINE Alu 0 313 1 1041 131 0 0 chr6 23154396 23154572 -159260670 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 245 336 60 8 chr6 23154578 23154712 -159260530 + MIR3 SINE MIR 61 201 -7 505 203 38 23 chr6 23155016 23155149 -159260093 - MIR SINE MIR -71 191 57 2504 57 7 0 chr6 23155205 23155506 -159259736 + AluSp SINE Alu 1 303 -10 198 118 0 0 chr6 23155539 23155573 -159259669 + (TCCCC)n Simple_repeat Simple_repeat 4 37 0 1926 152 0 3 chr6 23155573 23155863 -159259379 - AluJb SINE Alu -23 289 1 219 293 28 28 chr6 23155864 23155970 -159259272 - L2 LINE L2 -303 2969 2864 669 119 0 0 chr6 23157778 23157879 -159257363 + AluJb SINE Alu 210 310 -2 2373 79 0 3 chr6 23158048 23158340 -159256902 - AluSg SINE Alu -19 291 1 286 344 68 21 chr6 23158492 23158684 -159256558 + MIR SINE MIR 6 206 -56 2288 78 3 3 chr6 23158696 23159013 -159256229 + AluSp SINE Alu 1 317 0 2102 115 0 44 chr6 23159907 23160228 -159255014 - AluSx SINE Alu -5 307 1 1682 150 18 81 chr6 23160293 23160431 -159254811 + AluJo SINE Alu 1 146 -166 261 0 0 0 chr6 23160431 23160460 -159254782 + (TA)n Simple_repeat Simple_repeat 1 29 0 1682 150 18 81 chr6 23160460 23160654 -159254588 + AluJo SINE Alu 146 312 0 770 214 92 6 chr6 23160857 23161030 -159254212 + MER5A DNA MER1_type 2 189 0 550 221 16 89 chr6 23161376 23161566 -159253676 - MER5B DNA MER1_type -2 176 1 2318 100 0 0 chr6 23162316 23162615 -159252627 + AluSg1 SINE Alu 1 299 -10 2206 73 35 7 chr6 23163251 23163537 -159251705 - AluSg SINE Alu -16 294 1 2125 119 3 13 chr6 23164234 23164536 -159250706 - AluSg SINE Alu -10 300 2 2296 94 0 7 chr6 23164961 23165260 -159249982 + AluSq SINE Alu 1 297 -16 216 200 0 0 chr6 23165404 23165449 -159249793 + T-rich Low_complexity Low_complexity 1 45 0 213 39 0 0 chr6 23165648 23165674 -159249568 + (TG)n Simple_repeat Simple_repeat 2 27 0 652 177 14 14 chr6 23165797 23165938 -159249304 - L1MB3 LINE L1 -2 6181 6041 1801 35 39 9 chr6 23165938 23166169 -159249073 + L1PA7 LINE L1 5915 6152 -2 2663 113 13 0 chr6 23166174 23166555 -159248687 - L1MB3 LINE L1 -130 6053 5668 2142 128 0 3 chr6 23166588 23166878 -159248364 - AluSq SINE Alu -24 289 1 2252 118 3 0 chr6 23167154 23167459 -159247783 + AluSq SINE Alu 1 306 -7 518 264 91 32 chr6 23167802 23168022 -159247220 - MIR SINE MIR -5 257 25 1720 151 49 30 chr6 23168026 23168330 -159246912 - AluJo SINE Alu -2 310 1 525 71 0 0 chr6 23168416 23168486 -159246756 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 2233 124 0 10 chr6 23168486 23168800 -159246442 - AluSx SINE Alu -1 311 1 21 36 0 0 chr6 23169199 23169227 -159246015 + AT_rich Low_complexity Low_complexity 1 28 0 1793 164 0 37 chr6 23169499 23169822 -159245420 - AluJo SINE Alu -1 311 1 524 240 65 37 chr6 23170012 23170229 -159245013 - L1MC4a LINE L1 -1764 6044 5822 363 154 0 0 chr6 23170240 23170305 -159244937 + (TA)n Simple_repeat Simple_repeat 2 66 0 280 207 98 0 chr6 23170307 23170389 -159244853 - L1MC4 LINE L1 -1339 6703 6614 1330 99 28 0 chr6 23170392 23170573 -159244669 - AluSg/x SINE Alu -7 303 118 442 201 33 113 chr6 23170573 23170590 -159244652 - L1MD2 LINE L1 -20 7960 7943 2048 130 0 17 chr6 23170590 23170891 -159244351 + AluSq SINE Alu 1 296 -17 442 201 33 113 chr6 23170891 23171001 -159244241 - L1MD2 LINE L1 -37 7943 7826 2307 104 3 3 chr6 23171001 23171310 -159243932 + AluSx SINE Alu 1 309 -3 442 201 33 113 chr6 23171310 23171412 -159243830 - L1MD2 LINE L1 -154 7826 6208 2354 147 14 14 chr6 23171449 23171877 -159243365 - L1MB4 LINE L1 -277 5903 5476 6533 66 18 47 chr6 23171976 23172958 -159242284 - SVA Other Other 0 1386 433 1592 82 7 36 chr6 23172975 23173254 -159241988 - SVA Other Other -520 866 596 5869 63 25 61 chr6 23173282 23174257 -159240985 - SVA Other Other -518 868 5 364 269 19 28 chr6 23174257 23174365 -159240877 - L1MD2 LINE L1 -217 6142 6036 1717 153 27 34 chr6 23174365 23174660 -159240582 - AluJo SINE Alu -16 296 4 2200 99 0 63 chr6 23175193 23175526 -159239716 + AluSx SINE Alu 1 312 0 213 280 65 11 chr6 23175576 23175669 -159239573 - MIR SINE MIR -79 183 86 1707 168 31 11 chr6 23175759 23176045 -159239197 + AluJb SINE Alu 1 292 -20 407 335 58 5 chr6 23176186 23176410 -159238832 + MIR SINE MIR 13 248 -14 191 205 0 0 chr6 23177456 23177495 -159237747 + MER5B DNA MER1_type 2 40 -138 191 304 0 0 chr6 23177520 23177566 -159237676 - MER5B DNA MER1_type -132 46 1 2418 70 3 10 chr6 23179081 23179381 -159235861 - AluY SINE Alu -11 300 3 324 0 0 0 chr6 23179422 23179458 -159235784 + (TG)n Simple_repeat Simple_repeat 1 36 0 893 215 0 0 chr6 23179458 23179616 -159235626 - FAM SINE Alu -17 158 1 2238 95 20 17 chr6 23179641 23179937 -159235305 - AluSx SINE Alu -15 297 1 185 0 40 0 chr6 23180278 23180303 -159234939 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2065 129 0 10 chr6 23180305 23180599 -159234643 - AluSq SINE Alu -22 291 1 500 176 0 0 chr6 23181357 23181442 -159233800 + AluY SINE Alu 209 293 -18 2370 97 3 0 chr6 23181453 23181763 -159233479 + AluSx SINE Alu 1 311 -1 1853 185 0 10 chr6 23181773 23182087 -159233155 + AluJb SINE Alu 1 311 -1 1099 91 0 0 chr6 23182122 23182254 -159232988 + AluSq/x SINE Alu 1 132 -181 201 39 0 0 chr6 23182408 23182434 -159232808 + (TA)n Simple_repeat Simple_repeat 1 26 0 2330 73 3 3 chr6 23182435 23182724 -159232518 - AluSp SINE Alu -24 289 1 2153 114 0 27 chr6 23182737 23183035 -159232207 - AluSq SINE Alu -23 290 1 26 0 0 0 chr6 23183106 23183132 -159232110 + AT_rich Low_complexity Low_complexity 1 26 0 1996 108 11 28 chr6 23183602 23183888 -159231354 + AluSq SINE Alu 13 293 -20 194 159 45 0 chr6 23185961 23186005 -159229237 + CT-rich Low_complexity Low_complexity 3 48 0 22 0 0 0 chr6 23186473 23186495 -159228747 + AT_rich Low_complexity Low_complexity 1 22 0 226 248 69 97 chr6 23186570 23186627 -159228615 + L1ME4a LINE L1 5975 6032 -89 2242 108 0 7 chr6 23186627 23186924 -159228318 - AluSx SINE Alu -12 300 6 226 248 69 97 chr6 23186924 23187011 -159228231 + L1ME4a LINE L1 6032 6115 -6 1605 165 10 34 chr6 23187297 23187429 -159227813 + AluJb SINE Alu 2 4294967113 -495 2248 110 3 13 chr6 23187429 23187947 -159227295 + AluSp SINE Alu 1 515 0 705 164 16 0 chr6 23188613 23188735 -159226507 - AluJb SINE Alu -8 304 181 2334 91 7 0 chr6 23188735 23189031 -159226211 - AluSg SINE Alu -12 298 1 216 0 0 0 chr6 23189031 23189055 -159226187 + (T)n Simple_repeat Simple_repeat 1 24 0 279 0 0 0 chr6 23189699 23189730 -159225512 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 200 33 0 chr6 23189910 23189970 -159225272 + MIR SINE MIR 86 147 -115 238 235 86 12 chr6 23190122 23190203 -159225039 + MIR3 SINE MIR 91 177 -31 1718 81 154 11 chr6 23190243 23190503 -159224739 - AluSg SINE Alu -3 297 1 570 41 0 0 chr6 23190754 23190827 -159224415 + AluY SINE Alu 222 294 -15 360 0 0 0 chr6 23191130 23191170 -159224072 + (TG)n Simple_repeat Simple_repeat 1 40 0 1883 116 45 0 chr6 23191170 23191438 -159223804 - AluSq SINE Alu -33 280 1 2211 127 0 0 chr6 23191728 23192028 -159223214 - AluSx SINE Alu -12 300 1 211 214 24 0 chr6 23193014 23193056 -159222186 + GA-rich Low_complexity Low_complexity 2 44 0 2345 92 3 3 chr6 23193180 23193486 -159221756 - AluSq SINE Alu -7 306 1 2213 117 3 0 chr6 23193488 23193787 -159221455 - AluSg SINE Alu -10 300 1 192 77 0 0 chr6 23194633 23194659 -159220583 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 599 205 70 119 chr6 23194869 23194940 -159220302 - L1ME2 LINE L1 -1 6163 6090 2305 94 7 3 chr6 23194940 23195247 -159219995 - AluSq SINE Alu -5 308 1 599 205 70 119 chr6 23195247 23195387 -159219855 - L1ME2 LINE L1 -74 6090 5969 201 39 0 0 chr6 23195387 23195413 -159219829 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 599 205 70 119 chr6 23195413 23195502 -159219740 - L1ME2 LINE L1 -195 5969 5877 1564 216 129 16 chr6 23195670 23195850 -159219392 - L1MD2 LINE L1 -8 6351 6193 204 40 0 0 chr6 23195850 23195875 -159219367 + (TG)n Simple_repeat Simple_repeat 2 26 0 1564 216 129 16 chr6 23195875 23196110 -159219132 - L1MD2 LINE L1 -166 6193 5885 1920 151 0 22 chr6 23196110 23196422 -159218820 - AluSx SINE Alu -7 305 1 934 149 65 0 chr6 23196422 23196590 -159218652 - L1MD2 LINE L1 -877 5482 5304 2634 67 0 13 chr6 23196607 23196922 -159218320 + AluSp SINE Alu 1 311 -2 2150 143 0 0 chr6 23197219 23197527 -159217715 - AluSq SINE Alu -5 308 1 378 243 90 30 chr6 23197886 23198074 -159217168 + MIR SINE MIR 17 212 -50 2138 122 0 35 chr6 23198256 23198575 -159216667 - AluSg SINE Alu -1 309 2 192 222 62 49 chr6 23198865 23198946 -159216296 + MIR SINE MIR 34 115 -93 2077 128 0 10 chr6 23199496 23199802 -159215440 + AluY SINE Alu 1 303 -8 459 243 108 60 chr6 23200940 23201208 -159214034 + L2 LINE L2 3033 3313 0 191 238 0 0 chr6 23201665 23201707 -159213535 + MIR SINE MIR 30 71 -137 2388 101 0 0 chr6 23201827 23202125 -159213117 - AluSx SINE Alu -14 298 1 432 0 0 0 chr6 23202210 23202258 -159212984 + (TG)n Simple_repeat Simple_repeat 2 49 0 671 242 6 22 chr6 23202759 23202941 -159212301 + MER5A DNA MER1_type 7 185 -4 1780 149 54 0 chr6 23203012 23203308 -159211934 - AluSx SINE Alu 0 312 1 180 289 0 0 chr6 23204697 23204749 -159210493 + MIR SINE MIR 156 207 -55 362 205 131 16 chr6 23206151 23206273 -159208969 + MIR SINE MIR 69 204 -58 2262 123 3 0 chr6 23206567 23206876 -159208366 + AluSq SINE Alu 1 310 -3 311 148 0 45 chr6 23206925 23207013 -159208229 + (TCTCC)n Simple_repeat Simple_repeat 3 86 0 1794 178 0 7 chr6 23207016 23207308 -159207934 - AluJb SINE Alu -18 294 5 21 36 0 0 chr6 23208895 23208923 -159206319 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 29 0 chr6 23209170 23209451 -159205791 + AluSx SINE Alu 1 289 -23 2151 256 79 24 chr6 23209531 23210241 -159205001 + MER20B DNA MER1_type 35 783 0 234 357 10 10 chr6 23210291 23210389 -159204853 + MER5A DNA MER1_type 4 101 -88 2424 90 3 3 chr6 23210451 23210763 -159204479 - AluSx SINE Alu 0 312 1 2140 138 0 13 chr6 23210890 23211202 -159204040 + AluSx SINE Alu 1 308 -4 228 325 145 35 chr6 23211268 23211674 -159203568 - L2 LINE L2 -691 2623 2173 2122 111 7 10 chr6 23211895 23212192 -159203050 - AluSx SINE Alu -16 296 1 1888 144 10 13 chr6 23213981 23214294 -159200948 - AluJb SINE Alu 0 312 1 238 215 25 0 chr6 23214457 23214536 -159200706 + (TA)n Simple_repeat Simple_repeat 1 81 0 282 326 142 0 chr6 23214615 23214756 -159200486 - MER91A DNA MER1_type -35 161 1 1782 149 14 35 chr6 23214873 23215191 -159200051 - AluJo SINE Alu 0 312 1 2329 112 3 0 chr6 23215551 23215863 -159199379 + AluSq SINE Alu 1 313 0 226 196 246 36 chr6 23216058 23216196 -159199046 - L1MA10 LINE L1 0 6334 6168 584 135 0 0 chr6 23216210 23216299 -159198943 - AluSg/x SINE Alu -4 305 217 1747 187 35 16 chr6 23216319 23216694 -159198548 - L1MB1 LINE L1 -15 6174 5793 2035 118 42 0 chr6 23217490 23217777 -159197465 + AluSx SINE Alu 1 299 -13 2278 135 0 0 chr6 23218004 23218316 -159196926 - AluSx SINE Alu 0 312 1 1345 132 0 85 chr6 23218508 23218619 -159196623 + MER46A DNA MER2_type 1 80 -2651 1844 124 40 11 chr6 23218619 23218921 -159196321 - AluSq SINE Alu 0 310 1 1345 132 0 85 chr6 23218921 23219066 -159196176 + MER46A DNA MER2_type 80 236 0 21 0 0 0 chr6 23221347 23221368 -159193874 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr6 23221867 23221904 -159193338 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr6 23222407 23222428 -159192814 + (TG)n Simple_repeat Simple_repeat 1 21 0 219 259 0 0 chr6 23224798 23224852 -159190390 + MER5B DNA MER1_type 1 54 -124 2101 147 0 3 chr6 23224860 23225172 -159190070 + AluJb SINE Alu 1 311 -1 1366 175 4 22 chr6 23225175 23225404 -159189838 + AluJo SINE Alu 6 230 -82 221 157 0 59 chr6 23225936 23225987 -159189255 + GA-rich Low_complexity Low_complexity 4 51 0 1962 134 81 85 chr6 23226099 23226504 -159188738 + Tigger2a DNA MER2_type 3 407 -2301 2289 114 0 0 chr6 23226504 23226803 -159188439 - AluSq SINE Alu -14 299 1 1962 134 81 85 chr6 23226803 23226831 -159188411 + Tigger2a DNA MER2_type 407 434 0 207 0 0 0 chr6 23227515 23227538 -159187704 + (T)n Simple_repeat Simple_repeat 1 23 0 2945 97 22 48 chr6 23227538 23228712 -159186530 - SVA Other Other -799 1047 432 426 20 0 0 chr6 23229447 23229498 -159185744 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2003 176 34 10 chr6 23230059 23230473 -159184769 + L1MB3 LINE L1 5718 6141 -42 871 117 95 0 chr6 23230474 23230611 -159184631 + AluSg/x SINE Alu 146 295 -15 306 0 0 0 chr6 23230634 23230668 -159184574 + (TA)n Simple_repeat Simple_repeat 1 34 0 2495 61 3 0 chr6 23230700 23230994 -159184248 - AluSg SINE Alu -14 296 2 1925 152 3 3 chr6 23231447 23231737 -159183505 + AluJo SINE Alu 7 296 -16 255 196 0 0 chr6 23231787 23231843 -159183399 - MER5A DNA MER1_type -83 106 51 457 254 90 16 chr6 23231877 23232066 -159183176 - HAL1 LINE L1 -2256 251 49 199 227 0 0 chr6 23232234 23232278 -159182964 - MIR SINE MIR -6 256 213 2060 181 98 65 chr6 23232691 23233295 -159181947 + MLT1E2 LTR MaLR 1 626 0 224 295 213 8 chr6 23233477 23233599 -159181643 + MIR3 SINE MIR 20 166 -42 610 115 21 21 chr6 23233845 23233941 -159181301 + AluSq/x SINE Alu 39 134 -179 2232 94 0 33 chr6 23233944 23234251 -159180991 + AluSq SINE Alu 6 302 -11 896 199 6 0 chr6 23234987 23235153 -159180089 + FRAM SINE Alu 4 170 -6 234 0 0 0 chr6 23236094 23236120 -159179122 + (TG)n Simple_repeat Simple_repeat 1 26 0 1779 132 16 0 chr6 23236120 23236371 -159178871 - AluSx SINE Alu -33 279 25 2243 112 0 0 chr6 23236801 23237095 -159178147 + AluSx SINE Alu 1 294 -18 961 222 15 15 chr6 23237480 23237683 -159177559 - MLT1A2 LTR MaLR 0 374 172 842 208 5 68 chr6 23237704 23237751 -159177491 - MLT1A2 LTR MaLR -171 194 146 2374 100 0 3 chr6 23237751 23238060 -159177182 - AluSp SINE Alu -5 308 1 842 208 5 68 chr6 23238060 23238219 -159177023 - MLT1A2 LTR MaLR -219 146 1 245 0 27 27 chr6 23238347 23238384 -159176858 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2263 102 0 3 chr6 23238384 23238669 -159176573 - AluSq SINE Alu -1 320 1 2282 102 0 23 chr6 23238872 23239177 -159176065 + AluSg SINE Alu 1 298 -12 395 331 19 6 chr6 23239267 23239427 -159175815 + MIR SINE MIR 35 196 -66 1793 157 7 4 chr6 23239452 23239756 -159175486 + AluJb SINE Alu 1 305 0 2076 116 3 46 chr6 23239870 23240197 -159175045 + AluSq SINE Alu 1 313 0 402 273 15 0 chr6 23240198 23240325 -159174917 + MIR SINE MIR 23 152 -62 2400 103 0 0 chr6 23241108 23241418 -159173824 - AluSg SINE Alu 0 310 1 2198 98 7 0 chr6 23241749 23242063 -159173179 + AluSx SINE Alu 1 316 0 2381 94 3 0 chr6 23242868 23243166 -159172076 + AluSp SINE Alu 1 299 -14 2088 105 61 0 chr6 23243264 23243559 -159171683 + AluSq SINE Alu 1 313 0 1862 150 7 3 chr6 23243569 23243876 -159171366 + AluSx SINE Alu 1 308 -4 1301 167 13 0 chr6 23243877 23244111 -159171131 + L1MD3 LINE L1 7746 7982 -13 749 124 0 0 chr6 23244135 23244240 -159171002 + FLAM_C SINE Alu 2 106 -37 2269 95 7 13 chr6 23245554 23245859 -159169383 - AluSx SINE Alu -9 303 1 340 221 87 55 chr6 23246821 23246948 -159168294 - MIR SINE MIR -60 148 18 1028 143 0 12 chr6 23247354 23247515 -159167727 - AluSg/x SINE Alu -13 297 139 2196 95 25 0 chr6 23248163 23248446 -159166796 - AluSx SINE Alu -22 290 1 312 336 23 0 chr6 23249872 23250000 -159165242 + MIR3 SINE MIR 78 208 0 22 0 0 0 chr6 23250215 23250237 -159165005 + AT_rich Low_complexity Low_complexity 1 22 0 14711 199 43 17 chr6 23250432 23254770 -159160472 + L1PB1 LINE L1 6 4234 -2633 2200 115 0 3 chr6 23254770 23255066 -159160176 + AluSg SINE Alu 1 295 -15 14711 199 43 17 chr6 23255066 23255398 -159159844 + L1PB1 LINE L1 4234 4556 -2311 2074 112 42 0 chr6 23255398 23255685 -159159557 + AluSc SINE Alu 1 299 -10 14711 199 43 17 chr6 23255685 23256107 -159159135 + L1PB1 LINE L1 4556 4966 -1901 2074 127 19 3 chr6 23256107 23256414 -159158828 + AluSx SINE Alu 1 312 0 14711 199 43 17 chr6 23256414 23257846 -159157396 + L1PB1 LINE L1 4966 6865 -2 2014 145 17 7 chr6 23257990 23258157 -159157085 - AluSx SINE Alu -12 300 127 2023 128 6 31 chr6 23258157 23258478 -159156764 - AluSp SINE Alu 0 313 1 2014 145 17 7 chr6 23258478 23258607 -159156635 - AluSx SINE Alu -185 127 1 2127 131 3 6 chr6 23259670 23259983 -159155259 - AluSx SINE Alu 0 312 1 356 278 247 11 chr6 23263632 23263895 -159151347 - L2 LINE L2 -819 2495 2171 2205 109 10 10 chr6 23264872 23265176 -159150066 - AluSp SINE Alu -9 304 1 1768 80 0 13 chr6 23265950 23266175 -159149067 - AluY SINE Alu -7 304 83 2128 113 35 0 chr6 23266502 23266785 -159148457 + AluSx SINE Alu 2 294 -18 2308 67 14 3 chr6 23266791 23267073 -159148169 + AluSp SINE Alu 20 304 -9 2036 116 0 11 chr6 23267423 23267744 -159147498 + AluSx SINE Alu 1 318 0 226 122 0 24 chr6 23267887 23267928 -159147314 - LTR16A1 LTR ERVL -361 96 57 388 280 96 75 chr6 23267973 23268378 -159146864 + L2 LINE L2 2781 3221 -92 1832 148 0 0 chr6 23268492 23268762 -159146480 - AluSx SINE Alu -10 302 33 1993 146 17 50 chr6 23268928 23269290 -159145952 + MER4D LTR ERV1 554 903 0 644 234 114 0 chr6 23269292 23269459 -159145783 - L1MB3 LINE L1 -154 6029 5844 5116 132 63 9 chr6 23269596 23270435 -159144807 + MER4D LTR ERV1 1 884 -19 2423 87 0 0 chr6 23270440 23270740 -159144502 - AluSq SINE Alu -13 300 1 918 191 13 74 chr6 23271392 23271623 -159143619 - AluJo SINE Alu -9 303 87 2468 54 3 3 chr6 23272651 23272949 -159142293 + AluSp SINE Alu 1 298 -15 180 0 0 0 chr6 23273788 23273808 -159141434 + (TG)n Simple_repeat Simple_repeat 1 20 0 1518 149 23 50 chr6 23273878 23274179 -159141063 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr6 23274701 23274739 -159140503 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1641 160 80 0 chr6 23274741 23275029 -159140213 - AluSx SINE Alu -1 311 1 278 339 80 9 chr6 23275223 23275335 -159139907 + L2 LINE L2 3148 3267 -5 21 36 0 0 chr6 23275586 23275614 -159139628 + AT_rich Low_complexity Low_complexity 1 28 0 256 180 20 0 chr6 23276971 23277021 -159138221 + LTR16C LTR ERVL 71 121 -370 424 179 152 0 chr6 23279619 23279731 -159135511 - L1MB4 LINE L1 -2 6178 6050 1416 126 50 14 chr6 23280796 23281018 -159134224 - MER30 DNA MER1_type 0 230 1 1263 125 0 6 chr6 23281105 23281281 -159133961 + AluJo SINE Alu 1 175 -137 1586 223 142 15 chr6 23281515 23282024 -159133218 - MLT1F1 LTR MaLR 0 567 1 2667 42 0 0 chr6 23282178 23282486 -159132756 - AluY SINE Alu -3 308 1 837 241 111 31 chr6 23282504 23282794 -159132448 - MSTD LTR MaLR -51 345 21 652 239 171 14 chr6 23282812 23283034 -159132208 - MIR SINE MIR -1 261 5 434 338 61 3 chr6 23283089 23283382 -159131860 - L1ME3A LINE L1 -208 5962 5653 2471 138 59 7 chr6 23283491 23283896 -159131346 + MSTA LTR MaLR 1 426 -2 1584 157 20 24 chr6 23283907 23284201 -159131041 - MLT1B LTR MaLR 0 390 98 920 138 0 8 chr6 23284208 23284338 -159130904 - FLAM_C SINE Alu -14 129 1 744 135 0 0 chr6 23284338 23284442 -159130800 - MLT1B LTR MaLR -281 109 6 543 130 0 22 chr6 23284489 23284581 -159130661 + MER65A LTR ERV1 1 90 -355 348 188 0 0 chr6 23284585 23284649 -159130593 + FLAM SINE Alu 69 132 -1 2016 77 0 40 chr6 23287572 23287846 -159127396 + AluY SINE Alu 35 297 -14 359 253 0 21 chr6 23288571 23288666 -159126576 + L3 LINE CR1 1481 1573 -4 309 89 0 0 chr6 23288971 23289016 -159126226 + (TG)n Simple_repeat Simple_repeat 2 46 0 229 316 97 26 chr6 23289471 23289585 -159125657 - L2 LINE L2 -6 3266 3145 260 27 27 0 chr6 23289782 23289819 -159125423 + (GA)n Simple_repeat Simple_repeat 1 38 0 332 279 27 108 chr6 23289898 23290120 -159125122 + MIR SINE MIR 6 209 -53 2114 90 0 21 chr6 23290123 23290438 -159124804 + AluY SINE Alu 1 309 0 2085 116 0 3 chr6 23290441 23290768 -159124474 + AluSx SINE Alu 1 326 0 394 216 11 11 chr6 23291234 23291322 -159123920 + L2 LINE L2 3224 3311 -2 206 361 83 10 chr6 23291328 23291533 -159123709 - L2 LINE L2 -25 3247 3028 554 211 23 76 chr6 23291569 23291660 -159123582 + MER97b DNA MER1_type? 13 92 -961 1778 123 80 4 chr6 23291660 23291936 -159123306 + AluSg SINE Alu 7 303 -7 554 211 23 76 chr6 23291936 23292015 -159123227 + MER97b DNA MER1_type? 92 174 -879 2061 84 40 0 chr6 23292017 23292325 -159122917 + AluSq SINE Alu 1 319 0 924 138 0 8 chr6 23292401 23292531 -159122711 + AluSg SINE Alu 6 134 -176 2090 114 3 26 chr6 23292531 23292838 -159122404 + AluSx SINE Alu 1 300 -12 2373 93 7 0 chr6 23292838 23293139 -159122103 + AluSp SINE Alu 1 303 -10 1899 140 0 0 chr6 23294647 23294919 -159120323 + AluSp SINE Alu 1 272 -41 546 310 29 8 chr6 23295161 23295403 -159119839 - L2 LINE L2 -1242 2072 1826 412 254 79 9 chr6 23295489 23295603 -159119639 + MIR SINE MIR 78 199 -63 2561 165 22 40 chr6 23295723 23296226 -159119016 - L1MB2 LINE L1 -2 6169 5676 2408 89 3 6 chr6 23296787 23297100 -159118142 + AluSx SINE Alu 1 312 0 2449 70 3 0 chr6 23297223 23297522 -159117720 - AluSc SINE Alu -9 300 1 1766 173 7 7 chr6 23297528 23297828 -159117414 - AluJo SINE Alu -12 300 1 1943 109 88 0 chr6 23299029 23299314 -159115928 - AluSp SINE Alu -2 311 2 207 0 0 0 chr6 23301354 23301377 -159113865 + (TA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr6 23301428 23301456 -159113786 + (CA)n Simple_repeat Simple_repeat 2 29 0 2077 110 0 28 chr6 23305104 23305422 -159109820 - AluSq SINE Alu 0 311 2 2240 112 0 3 chr6 23305640 23305943 -159109299 + AluSc SINE Alu 1 302 -7 1646 155 34 34 chr6 23305954 23306250 -159108992 + AluJb SINE Alu 1 296 -16 689 252 53 0 chr6 23307052 23307203 -159108039 + MIR SINE MIR 3 161 -101 353 338 96 0 chr6 23308730 23308866 -159106376 - MIR SINE MIR -112 150 2 2203 119 13 7 chr6 23308953 23309263 -159105979 + AluSx SINE Alu 1 312 0 3113 132 17 25 chr6 23310075 23310553 -159104689 + MER101 LTR ERV1 1 474 0 449 280 104 26 chr6 23310633 23310828 -159104414 - MIR SINE MIR -7 255 46 367 294 37 0 chr6 23311552 23311661 -159103581 + MIR SINE MIR 113 225 -37 2358 100 7 0 chr6 23311845 23312155 -159103087 - AluSp SINE Alu -1 312 1 261 293 49 0 chr6 23313934 23314016 -159101226 + MIR SINE MIR 43 128 -80 947 237 25 25 chr6 23314025 23314261 -159100981 - MER115 DNA AcHobo 0 693 458 2269 84 7 0 chr6 23314614 23314899 -159100343 + AluSp SINE Alu 1 287 -26 599 208 9 0 chr6 23315408 23315514 -159099728 - AluSq/x SINE Alu -205 108 2 189 0 0 0 chr6 23315540 23315561 -159099681 + (A)n Simple_repeat Simple_repeat 1 21 0 1829 117 41 0 chr6 23315664 23315930 -159099312 - AluSq SINE Alu -32 281 5 1994 129 6 13 chr6 23315989 23316300 -159098942 - AluSq SINE Alu -4 309 1 232 222 69 0 chr6 23316394 23316466 -159098776 - L1ME LINE L1 -395 5726 5650 386 242 84 47 chr6 23316534 23316806 -159098436 - L1ME3A LINE L1 -4 6166 5839 2256 112 0 0 chr6 23316846 23317151 -159098091 - AluSq SINE Alu -8 305 1 1537 181 29 7 chr6 23317230 23317507 -159097735 - AluJo SINE Alu -29 283 1 422 189 0 22 chr6 23317507 23317597 -159097645 - L1ME3A LINE L1 -738 5440 5353 398 151 161 0 chr6 23317608 23317701 -159097541 - L1MA4 LINE L1 -1 6299 6192 * 953 272 46 48 chr6 23317692 23317772 -159097470 - L1ME3A LINE L1 -780 5366 5287 2368 63 7 3 chr6 23317772 23318071 -159097171 - AluY SINE Alu -11 300 1 953 272 46 48 chr6 23318071 23318486 -159096756 - L1ME3A LINE L1 -859 5287 4872 708 242 46 16 chr6 23319893 23320087 -159095155 - MIR SINE MIR 0 262 63 2638 59 3 0 chr6 23320151 23320457 -159094785 - AluSp SINE Alu -6 307 1 1855 102 88 0 chr6 23320703 23320977 -159094265 - AluSg SINE Alu -12 298 1 2202 119 0 0 chr6 23320979 23321272 -159093970 - AluSg SINE Alu -16 294 2 1882 160 10 0 chr6 23321376 23321664 -159093578 - AluJb SINE Alu -21 291 1 22 35 0 0 chr6 23321880 23321909 -159093333 + AT_rich Low_complexity Low_complexity 1 29 0 2338 83 0 20 chr6 23322147 23322447 -159092795 - AluSg SINE Alu -16 294 1 450 288 112 38 chr6 23322472 23322785 -159092457 - L1ME3 LINE L1 -206 5956 5621 892 212 27 54 chr6 23323178 23323400 -159091842 + MER20 DNA MER1_type 1 216 -3 342 247 0 0 chr6 23323406 23323479 -159091763 + MER20 DNA MER1_type 134 206 -13 1950 145 7 3 chr6 23323546 23323835 -159091407 + AluJb SINE Alu 1 290 -22 283 176 39 0 chr6 23326465 23326516 -159088726 + MIR SINE MIR 77 129 -133 2379 68 7 3 chr6 23326605 23326901 -159088341 - AluSc SINE Alu -12 297 1 879 235 6 0 chr6 23327381 23327560 -159087682 + MER58A DNA MER1_type 44 223 -1 342 0 0 0 chr6 23327616 23327654 -159087588 + (CA)n Simple_repeat Simple_repeat 2 39 0 182 214 24 0 chr6 23328605 23328647 -159086595 + MIR SINE MIR 214 256 -6 238 354 52 0 chr6 23328766 23328862 -159086380 - L2 LINE L2 -35 3237 3137 1217 202 48 61 chr6 23329022 23329357 -159085885 + MLT1A1 LTR MaLR 1 361 -35 1528 189 25 4 chr6 23329357 23329637 -159085605 - AluJo SINE Alu -26 286 1 313 209 15 0 chr6 23329637 23329704 -159085538 + MLT1A1 LTR MaLR 298 365 0 201 74 0 0 chr6 23330178 23330205 -159085037 + (CA)n Simple_repeat Simple_repeat 2 28 0 285 311 102 85 chr6 23331409 23331714 -159083528 - L2 LINE L2 -1 3271 2962 192 239 42 28 chr6 23331714 23331785 -159083457 + L2 LINE L2 2887 2958 -356 431 257 18 1 chr6 23332414 23332534 -159082708 - L1ME3A LINE L1 -5 6157 6038 2281 86 3 46 chr6 23332633 23332917 -159082325 + AluSp SINE Alu 1 271 -42 213 39 0 0 chr6 23332917 23332943 -159082299 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2281 86 3 46 chr6 23332943 23332985 -159082257 + AluSp SINE Alu 271 313 0 686 270 41 10 chr6 23333379 23333575 -159081667 + MIR SINE MIR 47 248 -14 1451 188 30 13 chr6 23333933 23334231 -159081011 + AluJo SINE Alu 10 312 0 1499 178 7 22 chr6 23334612 23334882 -159080360 - AluJo SINE Alu -46 266 1 1911 66 4 0 chr6 23335262 23335489 -159079753 - AluSx SINE Alu -84 228 1 183 162 0 0 chr6 23335639 23335676 -159079566 + (TATG)n Simple_repeat Simple_repeat 3 39 0 381 225 39 126 chr6 23335735 23335917 -159079325 - MIR SINE MIR -78 184 19 204 37 0 0 chr6 23335961 23335970 -159079272 + (CAA)n Simple_repeat Simple_repeat 3 11 -18 2310 56 7 3 chr6 23335970 23336257 -159078985 + AluY SINE Alu 1 288 -23 204 37 0 0 chr6 23336257 23336274 -159078968 + (CAA)n Simple_repeat Simple_repeat 10 29 0 2487 65 3 3 chr6 23336939 23337245 -159077997 + AluSx SINE Alu 1 306 -6 270 0 0 0 chr6 23337245 23337275 -159077967 + (TA)n Simple_repeat Simple_repeat 2 31 0 323 306 40 81 chr6 23337280 23337368 -159077874 - L3 LINE CR1 -637 940 850 1730 182 3 0 chr6 23337368 23337654 -159077588 - AluJo SINE Alu -21 291 5 323 306 40 81 chr6 23337654 23337787 -159077455 - L3 LINE CR1 -727 850 728 2483 84 0 0 chr6 23338094 23338402 -159076840 - AluSg SINE Alu -2 308 1 1388 69 6 0 chr6 23338633 23338808 -159076434 - AluY SINE Alu -6 305 130 2330 85 0 3 chr6 23338881 23339174 -159076068 - AluSc SINE Alu -17 292 1 1106 107 0 156 chr6 23339174 23339342 -159075900 - AluSg SINE Alu -177 133 1 193 211 0 0 chr6 23339342 23339380 -159075862 - L3 LINE CR1 -911 666 629 636 294 132 41 chr6 23339483 23340309 -159074933 - L1MEc LINE L1 -4639 1757 857 21 0 0 0 chr6 23341724 23341745 -159073497 + AT_rich Low_complexity Low_complexity 1 21 0 2305 102 0 3 chr6 23341758 23342062 -159073180 - AluSg SINE Alu -7 303 1 1986 122 4 4 chr6 23342245 23342523 -159072719 - AluSx SINE Alu -12 300 23 337 266 79 36 chr6 23342564 23342703 -159072539 - L2 LINE L2 -8 3305 3161 2257 81 0 36 chr6 23342965 23343272 -159071970 + AluSg SINE Alu 1 296 -14 1804 158 21 0 chr6 23343359 23343644 -159071598 - Tigger3(Golem) DNA MER2_type -1 3028 2738 2259 103 0 3 chr6 23343644 23343954 -159071288 + AluY SINE Alu 1 309 -2 812 148 75 37 chr6 23343954 23344202 -159071040 - Tigger3(Golem) DNA MER2_type -574 2455 19 23 33 0 0 chr6 23345089 23345119 -159070123 + AT_rich Low_complexity Low_complexity 1 30 0 277 274 67 19 chr6 23345154 23345291 -159069951 + MIR3 SINE MIR 58 205 -3 205 292 14 28 chr6 23345411 23345483 -159069759 - MER5B DNA MER1_type -45 133 63 2304 99 0 0 chr6 23345489 23345791 -159069451 - AluSg SINE Alu -8 302 1 672 193 6 17 chr6 23346812 23346993 -159068249 + (TGG)n Simple_repeat Simple_repeat 1 179 0 * 715 128 41 21 chr6 23346978 23347221 -159068021 + (ATGGTG)n Simple_repeat Simple_repeat 1 248 0 1561 158 55 22 chr6 23347871 23348144 -159067098 + AluJb SINE Alu 7 288 -24 1775 118 0 0 chr6 23348742 23348980 -159066262 - AluSx SINE Alu -28 284 47 2266 108 0 3 chr6 23348988 23349285 -159065957 - AluSx SINE Alu -16 296 1 2304 123 0 0 chr6 23350516 23350824 -159064418 - AluSx SINE Alu -4 308 1 310 322 301 0 chr6 23351124 23351270 -159063972 + L2 LINE L2 3080 3269 -3 1200 118 139 224 chr6 23351798 23352266 -159062976 - MSTA LTR MaLR 0 428 1 1340 226 50 77 chr6 23352600 23352967 -159062275 - L1M4 LINE L1 -3264 2882 2530 1993 156 0 3 chr6 23352967 23353274 -159061968 - AluSx SINE Alu -6 306 1 1340 226 50 77 chr6 23353274 23353402 -159061840 - L1M4 LINE L1 -3616 2530 2400 2108 122 0 10 chr6 23353411 23353715 -159061527 - AluSx SINE Alu -11 301 1 2538 210 59 36 chr6 23353715 23354397 -159060845 - L1MD2 LINE L1 -70 6683 6018 2272 105 3 3 chr6 23354397 23354701 -159060541 + AluSg SINE Alu 2 305 -5 2538 210 59 36 chr6 23354701 23355015 -159060227 - L1MD2 LINE L1 -735 6018 5713 1766 162 54 3 chr6 23355015 23355311 -159059931 - AluJo SINE Alu -1 311 1 2538 210 59 36 chr6 23355311 23355900 -159059342 - L1MD2 LINE L1 -1040 5713 5139 2033 85 48 4 chr6 23355900 23356208 -159059034 - AluY SINE Alu 0 320 1 2538 210 59 36 chr6 23356208 23356412 -159058830 - L1MD2 LINE L1 -1614 5139 1705 611 209 7 2 chr6 23356409 23356565 -159058677 - L1MB4 LINE L1 0 6174 6012 * 349 241 155 0 chr6 23356545 23356661 -159058581 - L1MD2 LINE L1 -4823 1717 1584 * 1424 94 0 0 chr6 23356670 23356850 -159058392 - AluSg/x SINE Alu -3 309 130 2288 110 0 0 chr6 23356855 23357156 -159058086 - AluSx SINE Alu -11 301 1 1541 246 9 97 chr6 23357198 23357880 -159057362 - L1MD2 LINE L1 -4995 1548 927 273 348 41 37 chr6 23358478 23358722 -159056520 - L1MD2 LINE L1 -6279 261 17 1492 174 87 24 chr6 23358947 23359234 -159056008 + AluJo SINE Alu 1 305 -7 232 277 54 84 chr6 23359620 23359786 -159055456 - LTR33A LTR ERVL -6 517 357 233 234 62 31 chr6 23359949 23360013 -159055229 - LTR33A LTR ERVL -401 122 57 213 288 68 27 chr6 23360139 23360212 -159055030 + L2 LINE L2 3153 3228 -44 2388 92 0 0 chr6 23360532 23360835 -159054407 + AluSg SINE Alu 1 303 -7 315 250 90 10 chr6 23361309 23361409 -159053833 - MIR SINE MIR -14 248 141 2162 133 0 0 chr6 23361409 23361718 -159053524 - AluSx SINE Alu -3 309 1 24 0 0 0 chr6 23362465 23362489 -159052753 + AT_rich Low_complexity Low_complexity 1 24 0 350 250 24 65 chr6 23364708 23364832 -159050410 - L2 LINE L2 0 3313 3195 626 245 63 0 chr6 23365297 23365440 -159049802 + Charlie1 DNA MER1_type 2 153 -2608 2266 189 84 60 chr6 23365444 23365915 -159049327 + Charlie1 DNA MER1_type 2080 2538 -223 2043 134 0 0 chr6 23365915 23366207 -159049035 - AluSx SINE Alu -20 292 1 2266 189 84 60 chr6 23366207 23366341 -159048901 + Charlie1 DNA MER1_type 2538 2705 -56 843 154 15 0 chr6 23366341 23366471 -159048771 - FLAM_A SINE Alu -1 132 1 2266 189 84 60 chr6 23366471 23366530 -159048712 + Charlie1 DNA MER1_type 2705 2761 0 193 229 217 12 chr6 23367231 23367314 -159047928 + L2 LINE L2 2694 2793 -521 189 0 0 0 chr6 23367762 23367783 -159047459 + (TG)n Simple_repeat Simple_repeat 2 22 0 1760 182 22 14 chr6 23368249 23368620 -159046622 - MLT1A1 LTR MaLR 0 365 1 232 296 14 0 chr6 23368678 23368749 -159046493 + (ATGGTG)n Simple_repeat Simple_repeat 3 74 0 465 257 69 57 chr6 23368811 23368986 -159046256 - MIR SINE MIR -70 192 16 1620 155 3 71 chr6 23369571 23369880 -159045362 + AluJo SINE Alu 4 291 -21 338 347 8 8 chr6 23369930 23370051 -159045191 + MIR SINE MIR 33 153 -55 182 91 30 0 chr6 23370337 23370370 -159044872 + CT-rich Low_complexity Low_complexity 1 34 0 4406 240 58 17 chr6 23370416 23370646 -159044596 + L1MC4 LINE L1 6464 6683 -1359 356 71 18 0 chr6 23370646 23370702 -159044540 + (CA)n Simple_repeat Simple_repeat 1 57 0 4406 240 58 17 chr6 23370702 23371694 -159043548 + L1MC4 LINE L1 6683 7736 -306 360 273 0 0 chr6 23371685 23371773 -159043469 + L1MC4 LINE L1 7955 8042 0 * 860 255 59 8 chr6 23372089 23372328 -159042914 + MIR SINE MIR 12 262 0 1690 56 0 73 chr6 23372392 23372505 -159042737 + L1PA8 LINE L1 5956 6045 -127 2133 114 20 3 chr6 23372505 23372804 -159042438 + AluSg SINE Alu 3 306 -4 1690 56 0 73 chr6 23372804 23372924 -159042318 + L1PA8 LINE L1 6045 6172 0 320 268 28 0 chr6 23374189 23374260 -159040982 + MIR SINE MIR 14 86 -176 2140 149 0 0 chr6 23374309 23374618 -159040624 + AluSx SINE Alu 1 309 -3 2319 79 6 19 chr6 23375076 23375393 -159039849 + AluSq SINE Alu 1 313 0 1438 186 65 21 chr6 23375483 23375774 -159039468 - AluJo SINE Alu -8 304 1 3918 183 5 32 chr6 23377934 23378684 -159036558 - L1MB7 LINE L1 -19 6165 5436 225 289 98 123 chr6 23378733 23378771 -159036471 + L2 LINE L2 3036 3073 -199 2180 133 50 42 chr6 23378771 23379132 -159036110 - THE1B LTR MaLR 0 364 1 225 289 98 123 chr6 23379132 23379297 -159035945 + L2 LINE L2 3073 3234 -38 2355 95 3 0 chr6 23379473 23379777 -159035465 - AluSp SINE Alu -4 309 5 308 309 53 0 chr6 23380932 23381026 -159034216 + MIR SINE MIR 48 146 -116 2538 51 0 0 chr6 23381459 23381755 -159033487 - AluY SINE Alu -15 296 1 25 0 0 0 chr6 23381765 23381790 -159033452 + AT_rich Low_complexity Low_complexity 1 25 0 526 240 40 7 chr6 23381848 23381998 -159033244 - L1MD3 LINE L1 -5 7990 7836 379 308 60 14 chr6 23382108 23382273 -159032969 + MIR SINE MIR 12 186 -67 186 340 0 0 chr6 23382328 23382378 -159032864 - L3b LINE CR1 -255 1328 1279 447 259 74 19 chr6 23383689 23383851 -159031391 - MER112 DNA MER1_type 0 260 90 545 293 73 61 chr6 23384057 23385041 -159030201 - L1ME3A LINE L1 -233 5937 4924 366 261 65 65 chr6 23385065 23385232 -159030010 - L1ME3A LINE L1 -1325 4821 4652 2266 117 0 0 chr6 23385232 23385539 -159029703 - AluSx SINE Alu -5 307 1 366 261 65 65 chr6 23385539 23385696 -159029546 - L1ME3A LINE L1 -1493 4653 4497 1412 161 27 0 chr6 23385921 23386144 -159029098 + MER46A DNA MER2_type 8 236 0 387 41 0 0 chr6 23387018 23387067 -159028175 + (TG)n Simple_repeat Simple_repeat 1 49 0 352 328 91 20 chr6 23387630 23387828 -159027414 + MIR SINE MIR 32 243 -19 305 262 0 0 chr6 23388106 23388167 -159027075 + L2 LINE L2 3148 3208 -64 187 286 29 0 chr6 23389509 23389579 -159025663 - MIR SINE MIR -27 235 164 330 87 0 0 chr6 23390270 23390316 -159024926 + (TG)n Simple_repeat Simple_repeat 2 47 0 298 270 27 36 chr6 23390629 23390740 -159024502 + MIR3 SINE MIR 95 204 -4 742 100 91 0 chr6 23391027 23391137 -159024105 + AluSp/q SINE Alu 176 295 -18 323 301 35 26 chr6 23391305 23391418 -159023824 - MIR SINE MIR -95 167 54 858 244 5 29 chr6 23392162 23392371 -159022871 - MER3 DNA MER1_type -5 204 1 22 0 0 0 chr6 23395762 23395784 -159019458 + AT_rich Low_complexity Low_complexity 1 22 0 187 235 153 35 chr6 23396701 23396786 -159018456 - L3 LINE CR1 -781 796 702 338 370 72 24 chr6 23396811 23397019 -159018223 + MIR SINE MIR 45 262 0 1119 304 66 57 chr6 23397024 23397603 -159017639 - L3 LINE CR1 -876 701 118 30 0 0 0 chr6 23397939 23397969 -159017273 + AT_rich Low_complexity Low_complexity 1 30 0 376 362 119 4 chr6 23397999 23398234 -159017008 - MIR SINE MIR 0 262 1 22 35 0 0 chr6 23398393 23398422 -159016820 + AT_rich Low_complexity Low_complexity 1 29 0 2233 120 7 0 chr6 23398713 23399022 -159016220 + AluSx SINE Alu 1 311 -1 862 180 0 14 chr6 23400094 23400233 -159015009 - L1PA8A LINE L1 -2 6129 5993 2389 53 43 16 chr6 23400243 23400546 -159014696 - AluY SINE Alu 0 311 1 2328 105 3 0 chr6 23400856 23401161 -159014081 - AluSx SINE Alu -6 306 1 1837 185 0 10 chr6 23401196 23401510 -159013732 - AluJb SINE Alu -1 311 1 2452 80 0 3 chr6 23401520 23401831 -159013411 - AluY SINE Alu -1 310 1 865 163 39 79 chr6 23401831 23402009 -159013233 - FAM SINE Alu -4 171 1 1158 223 37 25 chr6 23402091 23402414 -159012828 + L1M4 LINE L1 2715 3041 -3105 279 228 83 119 chr6 23402466 23402582 -159012660 + L1ME3 LINE L1 5960 6068 -94 1799 209 48 19 chr6 23402582 23402959 -159012283 + MLT1B LTR MaLR 3 390 0 279 228 83 119 chr6 23402959 23403035 -159012207 + L1ME3 LINE L1 6068 6145 -17 196 164 104 45 chr6 23403206 23403273 -159011969 + MIR SINE MIR 160 230 -32 225 239 57 11 chr6 23403914 23404002 -159011240 + CT-rich Low_complexity Low_complexity 4 95 0 2842 162 96 23 chr6 23405783 23406344 -159008898 - MER6A DNA MER2_type -2 603 2 21 36 0 0 chr6 23406539 23406567 -159008675 + AT_rich Low_complexity Low_complexity 1 28 0 1796 70 0 0 chr6 23406886 23407101 -159008141 - AluSg/x SINE Alu -13 297 83 733 291 36 55 chr6 23408032 23408285 -159006957 - MIR SINE MIR 0 262 16 2168 61 61 7 chr6 23409027 23409307 -159005935 + AluSq SINE Alu 1 295 -18 2462 66 0 10 chr6 23409903 23410208 -159005034 - AluY SINE Alu -9 302 1 275 294 0 24 chr6 23410368 23410453 -159004789 + MER103 DNA DNA 68 150 -16 2075 101 40 0 chr6 23410625 23410903 -159004339 - AluSq SINE Alu -24 289 1 2230 99 18 27 chr6 23410983 23411317 -159003925 + MER1B DNA MER1_type 1 331 -8 1838 107 0 0 chr6 23411492 23411736 -159003506 + AluSg SINE Alu 1 244 -66 1455 217 14 0 chr6 23412655 23412932 -159002310 - AluJo SINE Alu -31 281 1 704 264 126 29 chr6 23413467 23413706 -159001536 + MIR SINE MIR 1 262 0 208 271 17 0 chr6 23416344 23416403 -158998839 - L3 LINE CR1 -863 714 655 1897 171 7 0 chr6 23417636 23417941 -158997301 - AluJo SINE Alu -5 307 1 1462 199 211 28 chr6 23418012 23418439 -158996803 - MLT1D LTR MaLR 0 505 1 1805 156 10 26 chr6 23419440 23419742 -158995500 - AluJb SINE Alu -15 297 1 303 283 75 33 chr6 23420158 23420278 -158994964 - MIR SINE MIR -73 189 65 1381 143 0 23 chr6 23420750 23420967 -158994275 + AluJo SINE Alu 84 295 -17 207 314 0 0 chr6 23423539 23423590 -158991652 - L2 LINE L2 -21 3251 3201 570 270 97 42 chr6 23423616 23423853 -158991389 + MIR SINE MIR 3 252 -10 223 312 78 0 chr6 23423873 23423950 -158991292 - MIR SINE MIR -150 112 30 255 307 59 0 chr6 23424069 23424170 -158991072 + AluYb8 SINE Alu 194 300 -8 226 283 0 22 chr6 23425749 23425841 -158989401 + (CAGAGA)n Simple_repeat Simple_repeat 4 93 0 405 261 94 13 chr6 23426196 23426494 -158988748 - L1ME4a LINE L1 -5 6116 5755 1374 217 16 4 chr6 23427271 23427529 -158987713 + Tigger7 DNA MER2_type 7 267 -466 562 143 0 57 chr6 23427526 23427631 -158987611 + Tigger7 DNA MER2_type 2388 2486 -1 * 2087 133 17 0 chr6 23428083 23428385 -158986857 - AluSq SINE Alu -6 307 1 1839 169 3 10 chr6 23428385 23428692 -158986550 - AluJo SINE Alu -7 305 1 4826 118 16 42 chr6 23428840 23429612 -158985630 - L1PA16 LINE L1 0 6166 5415 1922 115 65 4 chr6 23430388 23430667 -158984575 + AluSx SINE Alu 1 296 -16 370 306 93 22 chr6 23430678 23430861 -158984381 - MIR SINE MIR -47 215 20 274 321 121 80 chr6 23430909 23431499 -158983743 - L2 LINE L2 0 3272 2665 228 100 0 0 chr6 23432671 23432711 -158982531 + (A)n Simple_repeat Simple_repeat 1 40 0 2418 87 3 10 chr6 23433267 23433579 -158981663 + AluSg SINE Alu 1 310 0 239 189 288 23 chr6 23433749 23433852 -158981390 + MIR SINE MIR 32 154 -65 21 36 0 0 chr6 23434069 23434097 -158981145 + AT_rich Low_complexity Low_complexity 1 28 0 192 200 43 0 chr6 23434410 23434480 -158980762 + CT-rich Low_complexity Low_complexity 3 75 0 7993 186 30 16 chr6 23434493 23437015 -158978227 - L1MB3 LINE L1 0 6183 3697 2057 132 30 0 chr6 23437015 23437311 -158977931 + AluSx SINE Alu 1 305 -7 7993 186 30 16 chr6 23437311 23437364 -158977878 - L1MB3 LINE L1 -2486 3697 3646 2262 119 0 10 chr6 23437364 23437675 -158977567 - AluSq SINE Alu -5 308 1 7993 186 30 16 chr6 23437675 23437699 -158977543 - L1MB3 LINE L1 -2537 3646 3547 333 110 41 14 chr6 23438170 23438243 -158976999 + CT-rich Low_complexity Low_complexity 4 78 0 1382 177 100 17 chr6 23438259 23438558 -158976684 - MER33 DNA MER1_type 0 324 1 351 0 0 0 chr6 23440112 23440151 -158975091 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1116 164 30 73 chr6 23440407 23440639 -158974603 - AluJb SINE Alu -6 306 85 529 261 167 22 chr6 23440793 23441015 -158974227 + MIR SINE MIR 9 262 0 393 22 0 0 chr6 23441177 23441223 -158974019 + (TG)n Simple_repeat Simple_repeat 1 46 0 250 270 112 34 chr6 23442417 23442595 -158972647 + MIR SINE MIR 14 205 -57 2123 107 0 26 chr6 23443245 23443553 -158971689 - AluSg SINE Alu -10 300 1 221 299 118 10 chr6 23443942 23444059 -158971183 + MIR SINE MIR 32 162 -46 2236 112 0 0 chr6 23444330 23444626 -158970616 - AluSx SINE Alu -14 298 3 22 0 0 0 chr6 23445432 23445454 -158969788 + AT_rich Low_complexity Low_complexity 1 22 0 304 347 8 8 chr6 23446188 23446309 -158968933 + MIR SINE MIR 29 149 -113 2109 100 17 0 chr6 23446531 23446822 -158968420 - AluY SINE Alu -15 296 1 2329 117 11 30 chr6 23447600 23447968 -158967274 + THE1B LTR MaLR 1 361 -3 238 253 58 23 chr6 23447984 23448071 -158967171 - MIR SINE MIR -109 153 64 480 295 75 44 chr6 23448382 23448609 -158966633 - MIR SINE MIR 0 262 29 25 0 0 0 chr6 23449136 23449161 -158966081 + AT_rich Low_complexity Low_complexity 1 25 0 418 320 41 0 chr6 23449289 23449411 -158965831 - L2 LINE L2 -6 3307 3181 2341 105 0 9 chr6 23449919 23450234 -158965008 - AluSx SINE Alu 0 312 1 813 98 33 0 chr6 23450239 23450361 -158964881 - L1PA16 LINE L1 -13 6153 6028 351 0 0 0 chr6 23451161 23451200 -158964042 + (CA)n Simple_repeat Simple_repeat 2 40 0 2299 57 40 3 chr6 23452968 23453264 -158961978 - AluY SINE Alu -4 307 1 21 0 0 0 chr6 23453451 23453472 -158961770 + AT_rich Low_complexity Low_complexity 1 21 0 1509 133 44 4 chr6 23453678 23453903 -158961339 + AluJb SINE Alu 1 234 -78 243 0 0 0 chr6 23453905 23453932 -158961310 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 863 190 105 10 chr6 23454006 23454206 -158961036 - MER20 DNA MER1_type 0 219 1 370 307 62 17 chr6 23456108 23456304 -158958938 + MIR SINE MIR 16 218 -44 252 0 0 0 chr6 23457486 23457514 -158957728 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2208 121 0 0 chr6 23457930 23458235 -158957007 + AluSx SINE Alu 1 305 -7 1538 189 3 28 chr6 23459491 23459808 -158955434 + AluJb SINE Alu 1 309 -3 1801 89 0 0 chr6 23459963 23460187 -158955055 + AluSx SINE Alu 1 224 -88 388 276 96 47 chr6 23460663 23461007 -158954235 + L1ME LINE L1 5456 5816 -305 285 180 66 0 chr6 23461385 23461446 -158953796 - L2 LINE L2 0 3313 3249 2205 121 0 0 chr6 23461584 23461881 -158953361 + AluSq SINE Alu 1 297 -16 2235 203 58 37 chr6 23464092 23464712 -158950530 - L1MC3 LINE L1 -1 7784 7152 193 247 118 54 chr6 23464714 23464807 -158950435 + MIR SINE MIR 164 262 0 2166 116 30 0 chr6 23466011 23466314 -158948928 - AluSx SINE Alu 0 312 1 261 0 0 0 chr6 23466552 23466581 -158948661 + (TG)n Simple_repeat Simple_repeat 2 30 0 827 264 56 44 chr6 23466642 23467002 -158948240 + MLT1I LTR MaLR 46 409 0 366 80 0 0 chr6 23467294 23467344 -158947898 + (CA)n Simple_repeat Simple_repeat 2 51 0 200 200 0 25 chr6 23468277 23468317 -158946925 + CT-rich Low_complexity Low_complexity 2 40 0 670 269 114 14 chr6 23469981 23470342 -158944900 - HAL1 LINE L1 -1043 1464 1068 3943 91 6 0 chr6 23470343 23470884 -158944358 + L1PA10 LINE L1 5612 6155 -13 234 211 19 0 chr6 23471651 23471703 -158943539 + CT-rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr6 23471879 23471908 -158943334 + AT_rich Low_complexity Low_complexity 1 29 0 644 62 0 21 chr6 23472449 23472546 -158942696 + AluSx SINE Alu 216 310 -2 25 31 0 0 chr6 23472619 23472651 -158942591 + AT_rich Low_complexity Low_complexity 1 32 0 1461 179 39 14 chr6 23472664 23472943 -158942299 - AluJb SINE Alu -21 291 6 315 0 0 0 chr6 23473727 23473762 -158941480 + (TAA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr6 23474466 23474494 -158940748 + AT_rich Low_complexity Low_complexity 1 28 0 617 293 250 5 chr6 23474598 23475065 -158940177 - L2 LINE L2 -41 3272 2666 1208 196 4 13 chr6 23475065 23475290 -158939952 - MER58A DNA MER1_type 0 224 2 836 181 142 60 chr6 23475654 23475935 -158939307 - MER33 DNA MER1_type 0 324 21 2321 101 10 7 chr6 23476219 23476527 -158938715 - AluSx SINE Alu -3 309 1 1706 173 3 33 chr6 23476952 23477259 -158937983 - AluJb SINE Alu -12 300 3 1363 118 0 29 chr6 23477259 23477463 -158937779 + AluJb SINE Alu 113 310 -2 901 262 33 0 chr6 23478210 23478420 -158936822 - MIR SINE MIR -39 223 7 248 333 73 18 chr6 23480408 23480573 -158934669 + MIR SINE MIR 14 187 -75 451 220 89 3 chr6 23480630 23480757 -158934485 + L1ME2 LINE L1 3523 3659 -2487 1769 275 23 17 chr6 23480822 23481465 -158933777 + L1ME2 LINE L1 3797 4443 -1703 702 173 0 16 chr6 23481466 23481593 -158933649 + 7SK RNA RNA 1 125 -68 490 66 0 0 chr6 23481643 23481704 -158933538 + 7SK RNA RNA 133 193 0 2486 241 99 19 chr6 23481704 23482386 -158932856 + L1ME2 LINE L1 4431 5057 -1109 1900 149 10 10 chr6 23482386 23482688 -158932554 + AluJb SINE Alu 1 302 -10 2486 241 99 19 chr6 23482688 23483589 -158931653 + L1ME2 LINE L1 5057 6162 -4 303 293 24 42 chr6 23483599 23483811 -158931431 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 23484578 23484653 -158930589 - MIR3 SINE MIR -17 191 116 2912 227 69 39 chr6 23485349 23487304 -158927938 - L1ME1 LINE L1 -5 6555 4544 480 90 0 0 chr6 23487302 23487369 -158927873 + L1PA16 LINE L1 6061 6127 -39 * 296 248 83 8 chr6 23487367 23487488 -158927754 - L1ME1 LINE L1 -2248 4292 4163 * 1442 136 50 12 chr6 23487493 23487735 -158927507 - Tigger3(Golem) DNA MER2_type 0 3031 2781 233 200 0 0 chr6 23487732 23487772 -158927470 - Tigger3(Golem) DNA MER2_type -2887 142 103 * 757 183 0 16 chr6 23487772 23487898 -158927344 - Tigger3(Golem) DNA MER2_type -2905 124 1 375 333 64 4 chr6 23487906 23488155 -158927087 - L1ME1 LINE L1 -2383 4157 3894 28 29 0 0 chr6 23488160 23488195 -158927047 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr6 23488266 23488301 -158926941 + AT_rich Low_complexity Low_complexity 1 35 0 255 243 151 19 chr6 23488310 23488516 -158926726 - L1ME1 LINE L1 -2702 3838 3606 772 138 0 0 chr6 23488522 23488638 -158926604 - Tigger3(Golem) DNA MER2_type -96 2933 2818 291 174 228 0 chr6 23488579 23488671 -158926571 + Tigger3(Golem) DNA MER2_type 2828 2940 -89 * 1895 273 44 52 chr6 23488837 23489087 -158926155 - L1ME1 LINE L1 -4029 2511 2261 806 168 8 0 chr6 23489087 23489218 -158926024 + FLAM_C SINE Alu 1 132 -1 1895 273 44 52 chr6 23489218 23490068 -158925174 - L1ME1 LINE L1 -4279 2261 1406 2393 142 23 2 chr6 23490068 23490463 -158924779 + MER57A LTR ERV1 1 403 0 1895 273 44 52 chr6 23490463 23490519 -158924723 - L1ME1 LINE L1 -5134 1406 1361 1995 152 30 30 chr6 23490519 23490882 -158924360 - THE1B LTR MaLR -1 363 1 1895 273 44 52 chr6 23490882 23490901 -158924341 - L1ME1 LINE L1 -5179 1361 1343 1514 163 32 104 chr6 23490907 23491282 -158923960 + MER7A DNA MER2_type 1 346 0 295 275 36 84 chr6 23491561 23491728 -158923514 - L1ME1 LINE L1 -5522 1008 850 358 295 109 67 chr6 23491886 23492171 -158923071 - L1ME1 LINE L1 -6187 353 57 1433 131 65 128 chr6 23492272 23492593 -158922649 + AluJo SINE Alu 1 301 -11 1237 236 74 54 chr6 23493651 23494150 -158921092 - L1ME2 LINE L1 -1 6163 5655 386 337 53 24 chr6 23494498 23494667 -158920575 + L2 LINE L2 3098 3271 -1 189 0 0 0 chr6 23494955 23494976 -158920266 + (CA)n Simple_repeat Simple_repeat 2 22 0 529 286 108 25 chr6 23497608 23497849 -158917393 - L2 LINE L2 -17 3296 3036 1426 152 156 7 chr6 23497970 23498240 -158917002 - AluJb SINE Alu -2 310 1 22 35 0 0 chr6 23498255 23498284 -158916958 + AT_rich Low_complexity Low_complexity 1 29 0 2669 220 93 17 chr6 23498297 23499067 -158916175 - L1ME2 LINE L1 -137 6027 5146 2259 118 0 0 chr6 23499067 23499371 -158915871 - AluSx SINE Alu -8 304 1 2669 220 93 17 chr6 23499371 23499686 -158915556 - L1ME2 LINE L1 -1018 5146 4856 988 291 103 28 chr6 23499702 23500235 -158915007 + L1MCc LINE L1 26 598 -5825 531 259 61 0 chr6 23500460 23500607 -158914635 - MIR SINE MIR -105 157 2 345 352 58 46 chr6 23500607 23501001 -158914241 - L2 LINE L2 -1229 2085 1687 2323 109 7 0 chr6 23501003 23501306 -158913936 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 23502917 23502939 -158912303 + AT_rich Low_complexity Low_complexity 1 22 0 313 192 55 0 chr6 23503871 23503944 -158911298 - L1MC3 LINE L1 -1139 6646 6570 378 0 0 0 chr6 23503982 23504024 -158911218 + (CA)n Simple_repeat Simple_repeat 2 43 0 2030 114 48 0 chr6 23504033 23504322 -158910920 - AluSx SINE Alu -9 303 1 257 279 59 0 chr6 23505121 23505189 -158910053 + MIR SINE MIR 107 178 -84 22 0 0 0 chr6 23506436 23506458 -158908784 + AT_rich Low_complexity Low_complexity 1 22 0 194 264 69 28 chr6 23506606 23506678 -158908564 - MIR SINE MIR -70 192 118 198 0 0 0 chr6 23507266 23507288 -158907954 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 233 305 133 9 chr6 23509543 23509648 -158905594 + MIR SINE MIR 104 221 -41 1787 173 6 19 chr6 23509804 23510116 -158905126 - AluJb SINE Alu -4 308 1 299 316 0 0 chr6 23514601 23514680 -158900562 - L2 LINE L2 -5 3267 3189 213 39 0 0 chr6 23514990 23515016 -158900226 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 2539 126 70 108 chr6 23516132 23516311 -158898931 - LTR49 LTR ERV1 -7 588 404 1598 175 0 69 chr6 23516311 23516511 -158898731 - AluJo SINE Alu 0 312 100 1820 149 0 11 chr6 23516511 23516792 -158898450 + AluSx SINE Alu 1 278 -34 369 0 0 0 chr6 23516802 23516843 -158898399 + (TG)n Simple_repeat Simple_repeat 2 42 0 204 67 0 0 chr6 23516842 23516872 -158898370 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1598 175 0 69 chr6 23516843 23516992 -158898250 - AluJo SINE Alu -221 91 4 2539 126 70 108 chr6 23516992 23517010 -158898232 - LTR49 LTR ERV1 -191 404 387 2664 29 7 0 chr6 23517010 23517319 -158897923 - AluY SINE Alu 0 311 1 2265 110 0 3 chr6 23517328 23517637 -158897605 - AluSg SINE Alu -2 308 1 2539 126 70 108 chr6 23517637 23518039 -158897203 - LTR49 LTR ERV1 -216 379 1 317 234 28 8 chr6 23518565 23518688 -158896554 + L1MC4 LINE L1 1996 6983 -1339 * 339 253 0 22 chr6 23518680 23518771 -158896471 + L1MC4 LINE L1 6895 6983 -1339 300 111 0 0 chr6 23518780 23518825 -158896417 + (TG)n Simple_repeat Simple_repeat 2 46 0 249 213 0 0 chr6 23519300 23519347 -158895895 - MIR SINE MIR -122 140 94 2227 97 0 35 chr6 23519559 23519869 -158895373 - AluSx SINE Alu -12 300 2 2213 109 0 0 chr6 23520118 23520422 -158894820 + AluSx SINE Alu 1 304 -8 1906 152 0 23 chr6 23520506 23520816 -158894426 - AluJb SINE Alu -3 309 7 7725 194 27 23 chr6 23522246 23524794 -158890448 - L1PA15 LINE L1 0 6165 3594 231 357 0 0 chr6 23524857 23524927 -158890315 - MIR SINE MIR -188 74 5 26 30 0 0 chr6 23525117 23525150 -158890092 + AT_rich Low_complexity Low_complexity 1 33 0 4512 169 53 4 chr6 23525150 23526304 -158888938 - L1PB4 LINE L1 -4 6152 4944 2098 119 80 14 chr6 23526715 23527067 -158888175 + THE1C LTR MaLR 1 375 0 646 90 0 0 chr6 23527470 23527559 -158887683 - AluSp/q SINE Alu -7 306 218 461 306 119 96 chr6 23527567 23529044 -158886198 + L2 LINE L2 1616 3127 -145 2385 202 87 14 chr6 23529044 23529608 -158885634 - MER77 LTR ERV1 0 605 1 461 306 119 96 chr6 23529608 23529758 -158885484 + L2 LINE L2 3127 3272 0 280 232 16 40 chr6 23530060 23530185 -158885057 + (CATAT)n Simple_repeat Simple_repeat 2 123 0 780 166 13 0 chr6 23530554 23530705 -158884537 + L1MC3 LINE L1 6961 7113 -672 285 277 36 0 chr6 23530708 23530791 -158884451 + MLT1F1 LTR MaLR 54 139 -428 2780 132 83 17 chr6 23530796 23531325 -158883917 + L1MC3 LINE L1 7202 7765 -20 469 294 81 30 chr6 23532478 23532675 -158882567 + MIR SINE MIR 20 226 -36 594 272 157 7 chr6 23532795 23532998 -158882244 + MIR SINE MIR 3 235 -27 255 286 109 41 chr6 23533163 23533310 -158881932 - MARNA DNA Mariner -83 503 347 271 340 7 100 chr6 23535436 23535586 -158879656 - MIR3 SINE MIR -63 145 10 1795 131 13 61 chr6 23535786 23536098 -158879144 - AluJb SINE Alu -15 297 1 600 366 83 18 chr6 23536250 23536646 -158878596 + L3 LINE CR1 931 1352 -225 520 117 0 0 chr6 23536689 23536766 -158878476 - Alu SINE Alu -2 310 234 2562 44 0 0 chr6 23636766 23637059 -158778183 - AluY SINE Alu -18 293 1 2126 160 46 60 chr6 23637059 23637539 -158777703 - L1M4 LINE L1 -935 5211 4739 1341 96 0 0 chr6 23637539 23637705 -158777537 - AluSp SINE Alu -15 298 133 1427 179 26 23 chr6 23637708 23638016 -158777226 - L1M4 LINE L1 -1401 4745 4437 189 107 0 0 chr6 23638188 23638216 -158777026 + (T)n Simple_repeat Simple_repeat 1 28 0 669 229 127 0 chr6 23638239 23638396 -158776846 + MER5B DNA MER1_type 2 178 0 517 240 99 5 chr6 23639509 23639701 -158775541 - L1ME4a LINE L1 -56 6065 5856 905 280 52 50 chr6 23639806 23640165 -158775077 + L1ME4a LINE L1 5603 5965 -156 1274 209 0 4 chr6 23640165 23640390 -158774852 - MER58A DNA MER1_type 0 224 1 905 280 52 50 chr6 23640390 23640530 -158774712 + L1ME4a LINE L1 5965 6103 -18 275 227 0 11 chr6 23640692 23640780 -158774462 + GA-rich Low_complexity Low_complexity 2 88 0 1972 130 13 3 chr6 23641140 23641439 -158773803 - AluSx SINE Alu -9 303 2 415 224 53 33 chr6 23641881 23642033 -158773209 - MER103 DNA DNA -1 165 11 2210 118 3 0 chr6 23642142 23642446 -158772796 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr6 23642607 23642627 -158772615 + (T)n Simple_repeat Simple_repeat 1 20 0 1860 177 0 0 chr6 23643275 23643569 -158771673 + AluJo SINE Alu 2 295 -17 688 208 164 17 chr6 23643780 23644011 -158771231 - L1ME4a LINE L1 -1 6120 5856 184 42 0 0 chr6 23644042 23644066 -158771176 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1688 148 3 66 chr6 23644066 23644370 -158770872 - AluJb SINE Alu -27 285 1 828 187 0 0 chr6 23644694 23644828 -158770414 - AluJo SINE Alu -37 275 142 1436 258 92 57 chr6 23645717 23646403 -158768839 + HsTC2a DNA Tc2 4 713 -31 477 243 77 12 chr6 23646700 23646869 -158768373 + MER104 DNA Tc2 1 180 0 304 358 44 0 chr6 23646993 23647130 -158768112 - L1ME4a LINE L1 -2211 5597 5455 2160 122 3 0 chr6 23647688 23647999 -158767243 - AluSq SINE Alu -1 312 1 237 247 0 17 chr6 23648000 23648059 -158767183 + MIR3 SINE MIR 99 157 -51 479 285 73 19 chr6 23648402 23648578 -158766664 + MIR SINE MIR 7 188 -66 40 49 0 0 chr6 23651728 23651789 -158763453 + AT_rich Low_complexity Low_complexity 1 61 0 26 50 0 0 chr6 23651948 23651988 -158763254 + AT_rich Low_complexity Low_complexity 1 40 0 184 425 78 26 chr6 23652312 23652465 -158762777 + L2 LINE L2 3108 3268 -4 2745 134 125 15 chr6 23653273 23653818 -158761424 - L1MB3 LINE L1 -7 6176 5572 2195 86 0 17 chr6 23654673 23654964 -158760278 + AluSg SINE Alu 1 286 -24 23 0 0 0 chr6 23655191 23655214 -158760028 + AT_rich Low_complexity Low_complexity 1 23 0 753 164 0 15 chr6 23655468 23655602 -158759640 - AluJo SINE Alu -170 132 1 340 183 0 87 chr6 23655871 23655975 -158759267 + MIR SINE MIR 99 192 -62 21 57 0 0 chr6 23657460 23657495 -158757747 + AT_rich Low_complexity Low_complexity 1 35 0 257 275 30 131 chr6 23657960 23658129 -158757113 - MIR SINE MIR -65 143 20 * 314 346 96 60 chr6 23658118 23658450 -158756792 + L2 LINE L2 2929 3272 0 948 207 50 18 chr6 23660708 23660930 -158754312 + MIR SINE MIR 8 236 -26 2275 91 3 10 chr6 23661025 23661321 -158753921 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr6 23661495 23661520 -158753722 + (T)n Simple_repeat Simple_repeat 1 25 0 441 0 0 0 chr6 23662191 23662240 -158753002 + (A)n Simple_repeat Simple_repeat 1 49 0 739 186 168 0 chr6 23662820 23662987 -158752255 + MER46A DNA MER2_type 1 195 -41 1632 76 5 0 chr6 23663251 23663461 -158751781 + AluY SINE Alu 1 211 -100 338 149 0 0 chr6 23663461 23663522 -158751720 + FAM SINE Alu 125 179 0 * 1307 213 45 14 chr6 23663511 23663798 -158751444 - Charlie1b DNA MER1_type -227 296 1 198 0 0 0 chr6 23664415 23664437 -158750805 + (CA)n Simple_repeat Simple_repeat 2 23 0 314 73 0 18 chr6 23664437 23664492 -158750750 + (GA)n Simple_repeat Simple_repeat 1 54 0 1094 145 0 0 chr6 23665084 23665243 -158749999 + AluJo SINE Alu 137 295 -17 569 271 117 11 chr6 23665243 23665509 -158749733 - L1ME LINE L1 -310 5811 5518 181 270 79 48 chr6 23666020 23666083 -158749159 + L2 LINE L2 3156 3220 -52 342 272 96 15 chr6 23666192 23666328 -158748914 + MIR SINE MIR 116 262 0 691 36 0 0 chr6 23666379 23666463 -158748779 - L1PA10 LINE L1 -10 6158 6075 2493 88 0 0 chr6 23666704 23667010 -158748232 - AluSq SINE Alu -7 306 1 1409 232 27 7 chr6 23667267 23667560 -158747682 - AluJo SINE Alu -13 299 1 680 232 111 5 chr6 23667740 23667938 -158747304 + MER20 DNA MER1_type 1 219 0 423 243 83 24 chr6 23668102 23668271 -158746971 + MIR SINE MIR 84 262 0 369 320 10 0 chr6 23668283 23668380 -158746862 + L3 LINE CR1 1368 1465 -112 209 289 13 13 chr6 23668787 23668863 -158746379 - MIR SINE MIR -4 258 183 21 0 0 0 chr6 23669415 23669436 -158745806 + AT_rich Low_complexity Low_complexity 1 21 0 4380 116 9 42 chr6 23669441 23670116 -158745126 - HSMAR1 DNA Mariner -228 1059 407 342 106 0 0 chr6 23670218 23670265 -158744977 - Alu SINE Alu -256 47 1 495 235 59 0 chr6 23671079 23671215 -158744027 - MIR SINE MIR -71 191 48 23 0 0 0 chr6 23672069 23672092 -158743150 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 23673798 23673820 -158741422 + AT_rich Low_complexity Low_complexity 1 22 0 2090 101 42 0 chr6 23677258 23677544 -158737698 - AluSg SINE Alu -10 300 3 383 61 0 0 chr6 23678519 23678568 -158736674 - Alu SINE Alu -10 292 244 1461 156 38 0 chr6 23678570 23678833 -158736409 + L1 LINE L1 3707 3979 -2167 8390 128 26 20 chr6 23679006 23680468 -158734774 - L1M1 LINE L1 -4345 3220 1751 7124 15 39 0 chr6 23680475 23681323 -158733919 - L1PA2 LINE L1 0 6155 5275 430 61 0 45 chr6 23681307 23681373 -158733869 + L1P LINE L1 3001 3063 -3083 * 555 89 22 0 chr6 23683402 23683492 -158731750 - AluJb SINE Alu -19 293 202 201 323 177 10 chr6 23685240 23685336 -158729906 + L2 LINE L2 3155 3266 -6 1880 133 43 0 chr6 23686001 23686280 -158728962 - AluSx SINE Alu -21 291 1 428 242 38 8 chr6 23687542 23687674 -158727568 + MER103 DNA DNA 12 147 -19 24 0 0 0 chr6 23687829 23687853 -158727389 + AT_rich Low_complexity Low_complexity 1 24 0 318 231 46 46 chr6 23688506 23688614 -158726628 - L1ME4a LINE L1 -6 6115 6008 24 32 0 0 chr6 23688680 23688711 -158726531 + AT_rich Low_complexity Low_complexity 1 31 0 1340 203 72 0 chr6 23688722 23689013 -158726229 + MER58B DNA MER1_type 30 341 0 591 266 23 0 chr6 23689116 23689289 -158725953 - L1ME4a LINE L1 -423 5698 5522 27 0 0 0 chr6 23689868 23689895 -158725347 + AT_rich Low_complexity Low_complexity 1 27 0 253 279 78 34 chr6 23690365 23690544 -158724698 + L2 LINE L2 3127 3313 0 265 371 91 11 chr6 23691258 23691444 -158723798 - L3b LINE CR1 -89 1494 1294 21 36 0 0 chr6 23691707 23691735 -158723507 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr6 23692456 23692498 -158722744 + AT_rich Low_complexity Low_complexity 1 42 0 9141 172 31 23 chr6 23693526 23695939 -158719303 + L1MA9 LINE L1 3412 5839 -473 2170 110 13 7 chr6 23696220 23696530 -158718712 - AluSx SINE Alu 0 312 1 327 280 217 37 chr6 23696531 23696720 -158718522 - MLT1J2 LTR MaLR -121 329 107 195 283 0 0 chr6 23696779 23696832 -158718410 + MIR SINE MIR 210 262 0 849 201 0 155 chr6 23697444 23697708 -158717534 - MER58A DNA MER1_type 0 224 2 494 304 130 42 chr6 23699280 23699665 -158715577 - L2 LINE L2 -915 2399 1981 237 83 0 0 chr6 23700008 23700044 -158715198 + (TG)n Simple_repeat Simple_repeat 1 36 0 226 281 37 0 chr6 23700160 23700242 -158715000 + L3b LINE CR1 1241 1325 -258 236 276 0 40 chr6 23700593 23700669 -158714573 + L2 LINE L2 3239 3311 -2 208 188 47 16 chr6 23700850 23700914 -158714328 + (TA)n Simple_repeat Simple_repeat 1 66 0 376 380 127 8 chr6 23701143 23701388 -158713854 - L3 LINE CR1 -354 1223 950 192 40 0 0 chr6 23701536 23701561 -158713681 + (GA)n Simple_repeat Simple_repeat 2 26 0 416 303 56 28 chr6 23701608 23701786 -158713456 - L3b LINE CR1 -277 1306 1124 328 385 127 8 chr6 23701996 23702240 -158713002 - L3 LINE CR1 -354 1223 951 190 301 72 12 chr6 23702286 23702369 -158712873 - L3 LINE CR1 -746 831 744 1417 268 116 18 chr6 23702704 23703256 -158711986 + L2 LINE L2 2255 2860 -454 2283 57 4 0 chr6 23703429 23703709 -158711533 + AluY SINE Alu 1 281 -30 414 0 0 0 chr6 23703710 23703756 -158711486 + (CA)n Simple_repeat Simple_repeat 1 46 0 337 297 36 18 chr6 23703933 23704044 -158711198 - MIR3 SINE MIR -3 205 93 2418 74 0 6 chr6 23704131 23704443 -158710799 + AluY SINE Alu 1 310 -1 7628 113 21 19 chr6 23704597 23707265 -158707977 - L1P3 LINE L1 -1996 4465 765 1806 222 69 21 chr6 23707266 23708276 -158706966 - L1ME LINE L1 -353 5880 4806 1900 172 47 40 chr6 23708276 23708701 -158706541 + MSTC LTR MaLR 1 428 0 1806 222 69 21 chr6 23708701 23708738 -158706504 - L1ME LINE L1 -1427 4806 4772 1200 233 116 71 chr6 23708862 23709392 -158705850 - L1ME LINE L1 -2241 3974 3469 2848 7 0 0 chr6 23709392 23709698 -158705544 + AluYb8 SINE Alu 1 306 -12 1200 233 116 71 chr6 23709698 23710187 -158705055 - L1ME LINE L1 -2746 3469 2909 955 254 48 17 chr6 23710376 23710794 -158704448 - L1ME LINE L1 -3328 2887 2457 518 281 80 34 chr6 23710796 23711184 -158704058 - L1ME LINE L1 -4887 1509 1104 1792 305 157 12 chr6 23711321 23712006 -158703236 + L2 LINE L2 1530 2114 -1200 1182 229 108 40 chr6 23712006 23712377 -158702865 + MSTD LTR MaLR 1 396 0 1792 305 157 12 chr6 23712377 23712775 -158702467 + L2 LINE L2 2114 2770 -544 1993 92 37 3 chr6 23712917 23713211 -158702031 - L1PA13 LINE L1 -1 6162 5859 211 315 62 27 chr6 23713738 23713884 -158701358 + L2 LINE L2 1436 1586 -1728 199 315 41 0 chr6 23713895 23713968 -158701274 + L2 LINE L2 2268 2343 -971 2494 38 0 3 chr6 23714311 23714604 -158700638 - AluY SINE Alu -19 292 1 263 259 116 60 chr6 23715070 23715286 -158699956 + HAL1b LINE L1 373 600 -748 22 0 0 0 chr6 23715404 23715426 -158699816 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 23715622 23715643 -158699599 + AT_rich Low_complexity Low_complexity 1 21 0 2798 173 61 22 chr6 23715807 23716444 -158698798 + LTR65 LTR ERV1 8 669 0 1417 183 76 59 chr6 23716451 23716544 -158698698 + Charlie2 DNA MER1_type 2166 2256 -606 2343 103 3 0 chr6 23716544 23716844 -158698398 + AluSq SINE Alu 1 301 -12 1417 183 76 59 chr6 23716844 23717049 -158698193 + Charlie2 DNA MER1_type 2256 2456 -406 2177 144 0 0 chr6 23717049 23717361 -158697881 - AluSx SINE Alu 0 312 1 1417 183 76 59 chr6 23717361 23717603 -158697639 + Charlie2 DNA MER1_type 2456 2716 -146 1944 123 0 24 chr6 23717604 23717896 -158697346 + AluSx SINE Alu 1 285 -27 226 226 86 21 chr6 23717910 23718003 -158697239 + Charlie2 DNA MER1_type 2701 2799 -63 337 305 23 23 chr6 23718383 23718511 -158696731 - MER5A DNA MER1_type 0 189 62 1924 144 0 0 chr6 23718683 23718954 -158696288 + AluSx SINE Alu 1 271 -41 444 266 4 17 chr6 23719904 23720450 -158694792 + (CA)n Simple_repeat Simple_repeat 1 538 0 192 285 0 0 chr6 23720517 23720668 -158694574 + (CA)n Simple_repeat Simple_repeat 2 152 0 532 232 69 45 chr6 23720730 23720966 -158694276 + L1ME1 LINE L1 5923 6160 -6 318 296 45 0 chr6 23721578 23721666 -158693576 - L2 LINE L2 -1 3312 3221 2197 75 32 4 chr6 23721666 23721944 -158693298 + AluSq SINE Alu 1 286 -27 783 233 4 14 chr6 23721973 23722182 -158693060 + L1ME1 LINE L1 5970 6178 0 289 319 30 30 chr6 23722951 23723117 -158692125 + MIR SINE MIR 23 188 -74 2632 55 11 0 chr6 23724506 23724869 -158690373 + L1P LINE L1 4804 5170 -976 503 113 0 0 chr6 23725106 23725186 -158690056 - L1P LINE L1 -1263 4883 4804 236 138 224 0 chr6 23725335 23725393 -158689849 + LTR37B LTR ERV1 198 268 -200 2272 100 0 0 chr6 23725560 23725851 -158689391 + AluSc SINE Alu 5 295 -14 23 78 0 0 chr6 23726172 23726223 -158689019 + AT_rich Low_complexity Low_complexity 1 51 0 858 186 93 0 chr6 23726372 23726544 -158688698 + MER5A DNA MER1_type 1 188 -1 2271 113 6 3 chr6 23726611 23726922 -158688320 + AluSq SINE Alu 1 312 -1 2094 124 0 0 chr6 23726983 23727281 -158687961 - AluJb SINE Alu -14 298 1 573 199 80 94 chr6 23727498 23727699 -158687543 + L1ME1 LINE L1 5940 6137 -29 677 147 88 7 chr6 23727721 23727857 -158687385 + L1MB2 LINE L1 6018 6164 -7 1437 222 162 9 chr6 23728042 23728506 -158686736 - MER90 LTR ERV1 0 614 80 640 177 35 7 chr6 23728508 23728649 -158686593 + L1ME1 LINE L1 5723 5867 -299 2201 174 54 54 chr6 23728651 23729221 -158686021 + L1MC4a LINE L1 7238 7807 -1 1739 138 51 4 chr6 23729245 23729521 -158685721 + AluJb SINE Alu 1 289 -23 327 203 0 0 chr6 23729540 23729619 -158685623 + GA-rich Low_complexity Low_complexity 1 79 0 721 208 87 8 chr6 23729619 23729873 -158685369 + L1ME1 LINE L1 5859 6142 -22 304 240 0 21 chr6 23730459 23730555 -158684687 - L1MC5 LINE L1 -32 7929 7836 8571 129 29 71 chr6 23731608 23731684 -158683558 + L1MA7 LINE L1 3512 3590 -2701 2095 68 11 0 chr6 23731684 23731950 -158683292 - AluY SINE Alu -4 307 39 8571 129 29 71 chr6 23731950 23734779 -158680463 + L1MA7 LINE L1 3590 6289 -2 26 0 0 0 chr6 23734779 23734805 -158680437 + AT_rich Low_complexity Low_complexity 1 26 0 314 286 99 77 chr6 23735070 23735433 -158679809 + L1M4c LINE L1 896 1266 -5583 3286 253 108 15 chr6 23736660 23737961 -158677281 + L1M4c LINE L1 1522 2943 -3907 1138 134 0 120 chr6 23737961 23738177 -158677065 + AluJb SINE Alu 85 274 -38 323 171 29 0 chr6 23738178 23738248 -158676994 + GA-rich Low_complexity Low_complexity 4 75 0 2019 198 150 19 chr6 23738360 23739666 -158675576 - L1MCb LINE L1 -4460 2104 517 578 277 162 9 chr6 23739674 23740093 -158675149 - L1MCb LINE L1 -5942 622 140 * 3210 183 75 38 chr6 23740084 23741067 -158674175 - L1MB7 LINE L1 0 6184 5238 2384 82 3 13 chr6 23741067 23741373 -158673869 - AluY SINE Alu -8 303 1 3210 183 75 38 chr6 23741373 23741582 -158673660 - L1MB7 LINE L1 -946 5238 4955 1852 178 0 10 chr6 23741582 23741880 -158673362 - AluSx SINE Alu -17 295 1 3210 183 75 38 chr6 23741880 23741990 -158673252 - L1MB7 LINE L1 -1229 4955 4850 886 144 0 8 chr6 23741996 23742128 -158673114 + AluJb SINE Alu 3 133 -179 21 0 0 0 chr6 23743019 23743040 -158672202 + AT_rich Low_complexity Low_complexity 1 21 0 1967 143 16 7 chr6 23743124 23743431 -158671811 - AluSx SINE Alu -2 310 1 465 227 153 26 chr6 23743512 23743741 -158671501 + MIR SINE MIR 4 261 -1 672 226 113 15 chr6 23743819 23744023 -158671219 + MER58A DNA MER1_type 1 224 0 24 85 0 0 chr6 23744587 23744646 -158670596 + AT_rich Low_complexity Low_complexity 1 59 0 1253 218 225 16 chr6 23745072 23745761 -158669481 - L1MB7 LINE L1 -2289 3857 3025 1349 143 30 158 chr6 23745788 23746181 -158669061 - Tigger3(Golem) DNA MER2_type -6 3023 1 1171 157 106 75 chr6 23746882 23747175 -158668067 - AluJb SINE Alu 0 302 1 2757 244 41 22 chr6 23747532 23748771 -158666471 - L1ME2 LINE L1 -11 6153 4767 344 283 28 44 chr6 23750076 23750256 -158664986 - MIR SINE MIR -13 249 73 801 262 128 33 chr6 23751521 23751888 -158663354 - MLT1K LTR MaLR -8 580 179 236 278 0 67 chr6 23752359 23752449 -158662793 + MLT1K LTR MaLR 9 92 -496 21 0 0 0 chr6 23752735 23752756 -158662486 + AT_rich Low_complexity Low_complexity 1 21 0 189 319 0 0 chr6 23753664 23753711 -158661531 + L2 LINE L2 3229 3275 -38 789 252 66 84 chr6 23754251 23754891 -158660351 - L2 LINE L2 -2 3311 2686 2442 65 0 19 chr6 23754891 23755201 -158660041 + AluY SINE Alu 1 304 -7 789 252 66 84 chr6 23755201 23755299 -158659943 - L2 LINE L2 -627 2686 2588 580 263 67 30 chr6 23755332 23755602 -158659640 - HsTC2 DNA Tc2 -6 1892 1613 1203 149 0 10 chr6 23755632 23755827 -158659415 - AluJb SINE Alu -36 276 84 251 241 35 11 chr6 23755879 23755966 -158659276 - HsTC2 DNA Tc2 -546 1352 1264 450 206 72 0 chr6 23756048 23756145 -158659097 - HsTC2 DNA Tc2 -1752 146 43 2148 124 0 3 chr6 23756798 23757104 -158658138 - AluSx SINE Alu -7 305 1 1801 198 72 2 chr6 23758914 23759566 -158655676 - L1M4 LINE L1 -457 5727 5034 719 271 143 55 chr6 23759707 23760161 -158655081 - L2 LINE L2 -3 3310 2817 610 207 37 43 chr6 23761384 23761548 -158653694 + MER5B DNA MER1_type 1 163 -15 736 218 31 52 chr6 23761571 23761764 -158653478 + MER5A DNA MER1_type 1 189 0 473 232 70 28 chr6 23762587 23762729 -158652513 + MIR SINE MIR 11 158 -104 1320 196 14 20 chr6 23762836 23763132 -158652110 - AluSq SINE Alu -9 304 11 2120 133 3 7 chr6 23763152 23763454 -158651788 - AluSx SINE Alu -11 301 1 2452 62 23 0 chr6 23763477 23763781 -158651461 - AluSq SINE Alu -2 311 1 476 84 14 0 chr6 23763797 23763868 -158651374 + MSTD LTR MaLR 325 396 0 656 297 89 17 chr6 23764659 23764895 -158650347 - MIR SINE MIR 0 262 10 3151 211 48 26 chr6 23865193 23866120 -158549122 - L1M2c LINE L1 -4458 2331 1385 305 310 89 13 chr6 23866525 23866683 -158548559 + MIR SINE MIR 79 248 -14 2172 199 69 2 chr6 23866787 23867223 -158548019 - MER70A LTR ERVL -5 467 3 542 243 117 24 chr6 23867338 23867544 -158547698 - MIR SINE MIR -1 261 37 422 222 72 52 chr6 23868244 23868388 -158546854 - MER112 DNA MER1_type -31 229 80 2987 215 23 8 chr6 23868388 23869031 -158546211 + MER82 DNA MER2_type 1 653 0 224 244 37 85 chr6 23869474 23869556 -158545686 + MIR SINE MIR 50 127 -81 218 213 38 12 chr6 23869661 23869741 -158545501 + (TA)n Simple_repeat Simple_repeat 2 83 0 882 217 0 0 chr6 23871550 23871711 -158543531 + FRAM SINE Alu 4 164 -2 1333 231 71 47 chr6 23872098 23872549 -158542693 - MLT1C LTR MaLR 0 467 6 1370 242 104 23 chr6 23872762 23873727 -158541515 + L1MC4 LINE L1 6472 7666 -376 1330 13 0 0 chr6 23873895 23874046 -158541196 + L1PA5 LINE L1 5993 6143 -11 30 27 0 0 chr6 23874046 23874083 -158541159 + AT_rich Low_complexity Low_complexity 1 37 0 1852 168 14 0 chr6 23875275 23875560 -158539682 + AluJb SINE Alu 9 297 -15 845 244 24 0 chr6 23876147 23876356 -158538886 + MER58A DNA MER1_type 4 217 -7 2243 104 0 17 chr6 23876886 23877183 -158538059 + AluSx SINE Alu 11 302 -10 1134 243 19 26 chr6 23878398 23878707 -158536535 - MER21B LTR ERV1 -460 403 97 375 228 0 13 chr6 23878759 23878838 -158536404 - MER21B LTR ERV1 -774 89 12 2117 176 61 117 chr6 23879257 23879992 -158535250 - LTR8A LTR ERV1 0 727 34 1082 226 51 72 chr6 23880005 23880475 -158534767 + MER39 LTR ERV1 248 707 0 2202 113 7 0 chr6 23881342 23881635 -158533607 - AluSc SINE Alu -14 295 1 183 246 148 0 chr6 23882716 23882777 -158532465 - L2 LINE L2 -15 3257 3188 204 244 0 93 chr6 23883272 23883358 -158531884 + MIR SINE MIR 114 191 -71 2108 107 61 35 chr6 23883420 23883735 -158531507 + MLT1B LTR MaLR 6 334 -56 2377 111 0 20 chr6 23883735 23884076 -158531166 + MER1B DNA MER1_type 1 334 -3 2108 107 61 35 chr6 23884076 23884135 -158531107 + MLT1B LTR MaLR 334 390 0 234 245 281 22 chr6 23884515 23884654 -158530588 - MIR SINE MIR -76 186 12 200 318 82 45 chr6 23885397 23885507 -158529735 + L2 LINE L2 2999 3112 -160 575 257 72 0 chr6 23886500 23886722 -158528520 + L1MB7 LINE L1 5947 6184 0 1036 196 107 66 chr6 23887325 23887672 -158527570 + MLT1A2 LTR MaLR 1 361 -13 2176 143 24 14 chr6 23888155 23888526 -158526716 - THE1C LTR MaLR 0 375 1 370 278 63 8 chr6 23888735 23888861 -158526381 + MER94 DNA DNA 2 134 0 553 321 101 36 chr6 23889322 23889918 -158525324 + L1MEd LINE L1 700 1386 -4846 437 383 17 48 chr6 23889912 23890267 -158524975 + L1MEc LINE L1 223 566 -6021 * 2271 112 7 0 chr6 23890678 23890981 -158524261 + AluSx SINE Alu 1 305 -7 251 280 42 14 chr6 23891052 23891263 -158523979 + L1MEc LINE L1 1118 1335 -5071 383 263 75 56 chr6 23891339 23891658 -158523584 + L1MEc LINE L1 1541 1865 -4722 360 226 91 19 chr6 23891755 23891963 -158523279 + L1MEc LINE L1 2317 2539 -4048 1336 202 67 27 chr6 23892546 23892877 -158522365 - MER2 DNA MER2_type 0 344 1 1296 189 49 65 chr6 23894509 23894816 -158520426 - AluJo SINE Alu -10 302 1 6672 128 47 18 chr6 23895568 23896763 -158518479 + Tigger3b DNA MER2_type 3 1231 0 227 312 0 64 chr6 23896815 23896940 -158518302 - MLT1I LTR MaLR -195 214 98 227 213 96 43 chr6 23896909 23897003 -158518239 - MLT1H LTR MaLR -389 160 62 463 293 57 0 chr6 23897315 23897472 -158517770 - MIR SINE MIR -13 249 84 578 314 90 42 chr6 23897539 23897873 -158517369 - L3 LINE CR1 -100 1477 1128 1515 280 55 25 chr6 23899043 23899230 -158516012 + MLT1D LTR MaLR 1 181 -324 234 0 0 0 chr6 23899230 23899256 -158515986 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 1515 280 55 25 chr6 23899256 23899670 -158515572 + MLT1D LTR MaLR 181 505 0 1312 173 101 36 chr6 23901481 23901759 -158513483 - AluJb SINE Alu -6 296 1 317 267 30 0 chr6 23902606 23902707 -158512535 - MER5A DNA MER1_type -76 113 10 22 56 0 0 chr6 23903183 23903219 -158512023 + AT_rich Low_complexity Low_complexity 1 36 0 403 281 41 20 chr6 23905164 23905310 -158509932 + L2 LINE L2 537 685 -2629 304 292 87 34 chr6 23905367 23905550 -158509692 + MLT1I LTR MaLR 99 314 -132 3677 300 108 7 chr6 23905668 23907110 -158508132 + L2 LINE L2 691 2277 -1037 2231 116 21 37 chr6 23907424 23907805 -158507437 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr6 23908009 23908034 -158507208 + AT_rich Low_complexity Low_complexity 1 25 0 2433 22 0 4 chr6 23908085 23908362 -158506880 + AluYa5 SINE Alu 36 311 0 272 319 175 19 chr6 23908489 23908649 -158506593 + MIR3 SINE MIR 11 195 -13 422 206 103 59 chr6 23909502 23909706 -158505536 + MLT1K LTR MaLR 357 569 -19 1459 220 117 93 chr6 23910048 23910756 -158504486 - MER50 LTR ERV1 0 734 10 1011 305 81 37 chr6 23911125 23911521 -158503721 - HERV16 LTR ERVL -4279 717 283 800 222 16 11 chr6 23911521 23911706 -158503536 + MER5A DNA MER1_type 2 187 -2 1011 305 81 37 chr6 23911706 23911928 -158503314 - HERV16 LTR ERVL -4713 283 72 286 236 0 0 chr6 23911929 23911984 -158503258 + MLT1K LTR MaLR 534 588 0 1375 261 59 39 chr6 23912807 23913248 -158501994 - LTR16A1 LTR ERVL -2 455 6 486 240 64 0 chr6 23913295 23913420 -158501822 - MIR SINE MIR -9 253 121 1793 193 56 13 chr6 23913864 23914238 -158501004 + MLT1B LTR MaLR 1 390 0 2041 161 23 40 chr6 23914355 23914423 -158500819 - MLT1B LTR MaLR 0 390 322 2377 95 0 0 chr6 23914423 23914729 -158500513 - AluSc SINE Alu -3 306 1 2041 161 23 40 chr6 23914729 23915057 -158500185 - MLT1B LTR MaLR -68 322 1 981 240 128 58 chr6 23915448 23915910 -158499332 + LTR33A LTR ERVL 1 494 -29 239 306 0 14 chr6 23916536 23916608 -158498634 + MER5B DNA MER1_type 106 176 -2 1867 150 42 36 chr6 23916747 23917107 -158498135 + THE1B LTR MaLR 1 362 -2 2800 115 49 0 chr6 23917338 23917746 -158497496 + MSTC LTR MaLR 1 428 0 465 317 75 22 chr6 23919187 23919414 -158495828 + MIR SINE MIR 1 239 -23 394 322 106 21 chr6 23920111 23920347 -158494895 + MIR SINE MIR 1 256 -6 227 253 173 0 chr6 23921145 23921220 -158494022 - MIR3 SINE MIR 0 208 121 314 350 142 9 chr6 23921391 23921617 -158493625 + MIR SINE MIR 3 258 -4 9513 200 46 4 chr6 23921639 23923903 -158491339 + L1PBa LINE L1 2660 5012 -1850 555 298 19 6 chr6 23924504 23924665 -158490577 - MIR SINE MIR -98 164 2 255 400 62 0 chr6 23924778 23924908 -158490334 + L2 LINE L2 3134 3271 -1 406 260 142 81 chr6 23925748 23925950 -158489292 + MLT1I LTR MaLR 142 363 -46 2496 81 0 0 chr6 23925950 23926258 -158488984 - AluSg SINE Alu -2 308 1 406 260 142 81 chr6 23926258 23926301 -158488941 + MLT1I LTR MaLR 363 402 -7 210 291 38 25 chr6 23926723 23926802 -158488440 + L2 LINE L2 3234 3313 0 28 79 0 0 chr6 23927163 23927226 -158488016 + AT_rich Low_complexity Low_complexity 1 63 0 191 214 0 0 chr6 23927288 23927330 -158487912 + L3b LINE CR1 1363 1404 -179 331 216 284 0 chr6 23927831 23927919 -158487323 - L2 LINE L2 -1 3312 3200 237 431 57 8 chr6 23927972 23928095 -158487147 + L2 LINE L2 3112 3240 -32 195 333 58 0 chr6 23928372 23928459 -158486783 + MIR SINE MIR 40 131 -77 513 286 12 12 chr6 23929155 23929316 -158485926 - MIR SINE MIR 0 262 102 27 81 0 0 chr6 23929385 23929447 -158485795 + AT_rich Low_complexity Low_complexity 1 62 0 325 248 114 9 chr6 23931637 23931742 -158483500 + MIR3 SINE MIR 86 201 -7 265 323 46 39 chr6 23932429 23932559 -158482683 + L2 LINE L2 3136 3266 -6 2273 66 0 21 chr6 23932929 23933247 -158481995 - AluY SINE Alu 0 312 1 1306 158 4 0 chr6 23933347 23933575 -158481667 - L1PA14 LINE L1 0 6161 5933 414 308 55 66 chr6 23935036 23935416 -158479826 + HAL1b LINE L1 52 427 -921 313 340 52 7 chr6 23935417 23935570 -158479672 + HAL1b LINE L1 451 610 -738 258 71 18 36 chr6 23935902 23935958 -158479284 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr6 23936389 23936418 -158478824 + AT_rich Low_complexity Low_complexity 1 29 0 225 224 31 31 chr6 23936537 23936635 -158478607 + L1MDa LINE L1 1299 1396 -5144 474 283 83 40 chr6 23936853 23937178 -158478064 + HAL1 LINE L1 1329 1667 -840 978 184 41 30 chr6 23937241 23937508 -158477734 - L1MA9 LINE L1 -771 5375 5106 * 3525 184 34 35 chr6 23937504 23938265 -158476977 + L1MA9 LINE L1 5347 6106 -206 21 36 0 0 chr6 23938385 23938413 -158476829 + AT_rich Low_complexity Low_complexity 1 28 0 811 231 121 5 chr6 23938417 23938616 -158476626 + MER58A DNA MER1_type 3 224 0 252 265 46 97 chr6 23938668 23938864 -158476378 + L1ME4a LINE L1 5922 6107 -14 2667 174 6 33 chr6 23940624 23941105 -158474137 + LOR1a LTR ERV1 1 469 -28 1484 77 87 0 chr6 23941105 23941313 -158473929 + MER30 DNA MER1_type 5 230 0 2667 174 6 33 chr6 23941313 23941342 -158473900 + LOR1a LTR ERV1 469 497 0 180 394 106 22 chr6 23941524 23941704 -158473538 + L2 LINE L2 3077 3271 -1 236 254 34 0 chr6 23942432 23942491 -158472751 - MIR SINE MIR -62 146 86 187 227 23 0 chr6 23944026 23944070 -158471172 + L2 LINE L2 2847 2891 -423 1545 143 91 7 chr6 23944920 23945206 -158470036 - L1MC1 LINE L1 -10 6323 6014 554 239 32 13 chr6 23945644 23945799 -158469443 - MER103 DNA DNA -2 164 7 1703 90 0 8 chr6 23945893 23946127 -158469115 + AluY SINE Alu 74 305 -6 23 54 0 0 chr6 23946250 23946287 -158468955 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr6 23946559 23946582 -158468660 + AT_rich Low_complexity Low_complexity 1 23 0 236 342 95 40 chr6 23946656 23946747 -158468495 + MIR SINE MIR 1 86 -176 1628 113 4 21 chr6 23946747 23946985 -158468257 - AluSq SINE Alu -79 234 1 236 342 95 40 chr6 23946985 23947115 -158468127 + MIR SINE MIR 86 234 -28 2269 147 76 27 chr6 23947866 23948275 -158466967 + Tigger2a DNA MER2_type 6 434 0 385 296 53 40 chr6 23948588 23948740 -158466502 - MER5B DNA MER1_type -24 154 1 572 175 21 0 chr6 23949204 23949301 -158465941 + MER81 DNA DNA 15 113 -1 2213 118 3 10 chr6 23949997 23950311 -158464931 - AluSx SINE Alu 0 312 1 2273 121 40 32 chr6 23951929 23952301 -158462941 - THE1C LTR MaLR 0 375 1 2201 101 7 7 chr6 23952710 23953008 -158462234 - AluSx SINE Alu -1 311 14 22 35 0 0 chr6 23955378 23955407 -158459835 + AT_rich Low_complexity Low_complexity 1 29 0 2124 84 3 21 chr6 23955409 23955693 -158459549 + AluY SINE Alu 21 299 -12 882 169 11 45 chr6 23955693 23955870 -158459372 + AluJb SINE Alu 134 304 -8 243 170 0 0 chr6 23956167 23956214 -158459028 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 526 101 13 13 chr6 23956296 23956375 -158458867 - MADE1 DNA Mariner 0 80 2 302 310 113 58 chr6 23956654 23956940 -158458302 + L1 LINE L1 3264 3584 -2562 1939 196 16 27 chr6 23956940 23957307 -158457935 - MLT1A1 LTR MaLR -2 363 1 302 310 113 58 chr6 23957307 23957455 -158457787 + L1 LINE L1 3584 3722 -2424 397 351 11 22 chr6 23957634 23957819 -158457423 + MER5A DNA MER1_type 6 188 -1 213 250 0 33 chr6 23958133 23958193 -158457049 - L2 LINE L2 0 3272 3215 254 295 33 58 chr6 23959975 23960185 -158455057 + MER20B DNA MER1_type 3 214 -5 198 0 0 0 chr6 23960222 23960244 -158454998 + (A)n Simple_repeat Simple_repeat 1 22 0 245 235 20 0 chr6 23960305 23960356 -158454886 + MLT1H1 LTR MaLR 1 52 -503 353 199 193 64 chr6 23960548 23960719 -158454523 + MLT1H1 LTR MaLR 327 519 -36 1222 160 5 0 chr6 23960964 23961158 -158454084 + MSTB LTR MaLR 1 195 -231 882 81 0 16 chr6 23961171 23961294 -158453948 + AluSg/x SINE Alu 177 297 -15 1221 169 42 17 chr6 23961320 23961557 -158453685 + MSTB LTR MaLR 184 426 0 22 0 0 0 chr6 23961598 23961620 -158453622 + AT_rich Low_complexity Low_complexity 1 22 0 296 271 98 57 chr6 23961641 23961763 -158453479 + L2 LINE L2 3180 3306 -7 2281 103 3 6 chr6 23961853 23962165 -158453077 + AluSp SINE Alu 1 311 -2 225 0 0 0 chr6 23962433 23962458 -158452784 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr6 23962458 23962492 -158452750 + (TA)n Simple_repeat Simple_repeat 2 35 0 275 0 29 0 chr6 23963243 23963278 -158451964 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 825 62 0 0 chr6 23963281 23963378 -158451864 - L1PA10 LINE L1 -32 6136 6040 320 228 120 0 chr6 23963472 23963564 -158451678 - MIR SINE MIR -6 256 154 27700 129 14 12 chr6 23963587 23969957 -158445285 + L1PA8A LINE L1 1 6441 -5 193 360 0 27 chr6 23969968 23970043 -158445199 - MIR SINE MIR -71 137 65 267 367 47 12 chr6 23970085 23970254 -158444988 - MIR SINE MIR -78 184 10 440 297 57 35 chr6 23970627 23970856 -158444386 - MLT1J2 LTR MaLR -216 234 1 22 0 0 0 chr6 23972760 23972782 -158442460 + AT_rich Low_complexity Low_complexity 1 22 0 513 167 49 0 chr6 23972782 23972884 -158442358 - L1MA8 LINE L1 -1 6290 6184 43 0 0 0 chr6 23972908 23972951 -158442291 + AT_rich Low_complexity Low_complexity 1 43 0 2238 114 8 40 chr6 23972951 23973328 -158441914 - L1MA8 LINE L1 -110 6181 5817 463 261 118 26 chr6 23973474 23973669 -158441573 - MIR SINE MIR -35 227 15 228 287 23 23 chr6 23973850 23973937 -158441305 + GA-rich Low_complexity Low_complexity 2 88 0 543 123 0 37 chr6 23973959 23974061 -158441181 - L1P5 LINE L1 -355 5801 5707 237 65 0 0 chr6 23974624 23974655 -158440587 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3250 125 28 10 chr6 23974655 23975160 -158440082 - LTR9B LTR ERV1 -89 555 42 16875 110 28 18 chr6 23975161 23975486 -158439756 - HUERS-P3b LTR ERV1 -1 7417 7097 11956 83 5 0 chr6 23975486 23977807 -158437435 + L1PA7 LINE L1 3825 6152 -2 16875 110 28 18 chr6 23977807 23980078 -158435164 - HUERS-P3b LTR ERV1 -321 7097 4839 13324 108 131 123 chr6 23980071 23983102 -158432140 - HUERS-P3b LTR ERV1 -3544 3874 747 * 834 131 82 14 chr6 23983110 23983268 -158431974 - HUERS-P3b LTR ERV1 -6859 559 410 420 175 52 62 chr6 23983254 23983351 -158431891 - HUERS-P3b LTR ERV1 -7322 96 1 * 1340 129 0 5 chr6 23983351 23983552 -158431690 - LTR9B LTR ERV1 0 644 445 2073 137 3 0 chr6 23983946 23984239 -158431003 - AluSq SINE Alu -17 296 3 295 317 48 35 chr6 23984275 23984420 -158430822 - L2 LINE L2 -185 3087 2941 224 380 96 0 chr6 23984787 23984974 -158430268 - L2 LINE L2 -824 2490 2286 452 160 9 66 chr6 23985260 23985366 -158429876 + MER58 DNA MER1_type 2306 2405 -15 1596 179 164 3 chr6 23987895 23988236 -158427006 + MSTD LTR MaLR 1 396 0 2039 85 19 11 chr6 23988844 23989115 -158426127 + AluSg1 SINE Alu 21 293 -16 336 48 0 0 chr6 23989135 23989177 -158426065 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr6 23991784 23991805 -158423437 + AT_rich Low_complexity Low_complexity 1 21 0 551 262 48 83 chr6 23992092 23992405 -158422837 + MLT1H LTR MaLR 219 520 -29 433 256 69 113 chr6 23992525 23992931 -158422311 - L1ME3A LINE L1 -232 5938 5551 456 289 125 32 chr6 23992940 23993183 -158422059 - MLT1J1 LTR MaLR -180 266 1 534 265 6 41 chr6 23993265 23993435 -158421807 - MIR SINE MIR -70 192 29 362 354 94 9 chr6 23993597 23993916 -158421326 + L2 LINE L2 1786 2131 -1183 27 0 0 0 chr6 23993970 23993997 -158421245 + AT_rich Low_complexity Low_complexity 1 27 0 475 250 47 20 chr6 23994327 23994475 -158420767 + L2 LINE L2 2931 3082 -190 262 296 326 20 chr6 23994799 23994995 -158420247 - L3 LINE CR1 -727 850 595 280 276 98 32 chr6 23995396 23995519 -158419723 - MIR SINE MIR -34 228 98 215 333 50 10 chr6 23996239 23996338 -158418904 - MIR SINE MIR -122 140 38 326 313 85 36 chr6 23996668 23996892 -158418350 + MIR SINE MIR 28 262 0 7981 111 95 96 chr6 23997014 23998711 -158416531 + pTR5 LTR ERV1 743 2438 0 1968 179 48 59 chr6 23998921 23999247 -158415995 - MLT2C2 LTR ERVL -11 453 132 1663 179 0 60 chr6 23999247 23999566 -158415676 - AluJb SINE Alu -12 300 1 1968 179 48 59 chr6 23999566 23999697 -158415545 - MLT2C2 LTR ERVL -332 132 1 2019 250 44 18 chr6 24000257 24000813 -158414429 - MER77 LTR ERV1 -4 601 54 520 290 94 27 chr6 24000924 24001148 -158414094 - MIR SINE MIR -10 252 14 1099 267 99 28 chr6 24001200 24001664 -158413578 - Charlie2 DNA MER1_type -2251 531 35 210 37 0 0 chr6 24002151 24002178 -158413064 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1900 111 15 0 chr6 24002179 24002440 -158412802 - AluSx SINE Alu -47 265 1 23 0 0 0 chr6 24002780 24002803 -158412439 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr6 24003580 24003602 -158411640 + AT_rich Low_complexity Low_complexity 1 22 0 2396 101 0 0 chr6 24005000 24005308 -158409934 - AluSq SINE Alu -5 308 1 250 282 0 13 chr6 24006539 24006617 -158408625 + CT-rich Low_complexity Low_complexity 1 77 0 318 276 0 32 chr6 24007493 24007616 -158407626 + MER115 DNA AcHobo 111 229 -464 274 310 129 23 chr6 24007813 24007984 -158407258 + L2 LINE L2 2897 3085 -187 389 248 302 0 chr6 24008761 24008910 -158406332 - MIR SINE MIR -30 232 39 361 248 283 0 chr6 24009527 24009672 -158405570 + MER5A DNA MER1_type 4 189 0 4353 193 72 1 chr6 24010198 24011205 -158404037 + Tigger6a DNA MER2_type 2 1079 -4 504 96 21 11 chr6 24011207 24011291 -158403951 + (TAGA)n Simple_repeat Simple_repeat 1 88 -7 3643 102 0 2 chr6 24011291 24011809 -158403433 + L1PA13 LINE L1 5640 6156 -7 504 96 21 11 chr6 24011809 24011818 -158403424 + (TAGA)n Simple_repeat Simple_repeat 88 95 0 27 73 0 0 chr6 24012285 24012340 -158402902 + AT_rich Low_complexity Low_complexity 1 55 0 300 264 182 0 chr6 24012793 24012903 -158402339 + MLT1J2 LTR MaLR 200 329 -121 476 173 233 40 chr6 24013056 24013206 -158402036 + MER3 DNA MER1_type 6 184 -25 1384 118 45 9 chr6 24013529 24013749 -158401493 + MER30 DNA MER1_type 1 228 -2 2251 71 0 0 chr6 24014356 24014692 -158400550 - AluY SINE Alu 0 336 1 1534 234 0 7 chr6 24017020 24017324 -158397918 + AluJo SINE Alu 2 303 -9 2070 113 20 13 chr6 24017677 24017977 -158397265 - AluSx SINE Alu -10 302 1 248 336 86 31 chr6 24018370 24018498 -158396744 + MIR3 SINE MIR 12 146 -62 296 255 10 20 chr6 24018745 24018847 -158396395 + MER103 DNA DNA 12 112 -54 23 0 0 0 chr6 24019120 24019143 -158396099 + AT_rich Low_complexity Low_complexity 1 23 0 2103 126 34 0 chr6 24022117 24022410 -158392832 + AluSx SINE Alu 1 303 -9 1352 134 40 27 chr6 24022538 24022762 -158392480 + AluJb SINE Alu 86 312 0 254 344 21 11 chr6 24023013 24023106 -158392136 + MIR SINE MIR 38 131 -131 2052 99 16 43 chr6 24023115 24023248 -158391994 + AluSg SINE Alu 2 137 -173 2300 81 0 3 chr6 24023248 24023544 -158391698 + AluY SINE Alu 1 295 -16 2052 99 16 43 chr6 24023544 24023713 -158391529 + AluSg SINE Alu 137 296 -14 413 354 74 41 chr6 24023715 24024501 -158390741 - L2 LINE L2 -1 3271 2463 2078 105 25 4 chr6 24024538 24024847 -158390395 + AluSx SINE Alu 1 315 0 213 108 0 0 chr6 24026302 24026339 -158388903 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1991 116 4 0 chr6 24026343 24026618 -158388624 - AluSg SINE Alu -34 276 1 509 274 14 56 chr6 24026799 24027014 -158388228 + LTR33 LTR ERVL 7 212 -309 235 222 30 121 chr6 24027233 24027332 -158387910 - MIR SINE MIR -66 142 53 458 275 48 53 chr6 24027342 24027549 -158387693 - MLT1K LTR MaLR -22 566 361 1560 204 106 10 chr6 24028620 24029037 -158386205 + MER101 LTR ERV1 6 462 -12 22 0 0 0 chr6 24029192 24029214 -158386028 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 24030558 24030581 -158384661 + AT_rich Low_complexity Low_complexity 1 23 0 181 355 51 29 chr6 24032917 24033055 -158382187 + L3b LINE CR1 1356 1496 -87 180 0 0 0 chr6 24033138 24033158 -158382084 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 213 196 0 0 chr6 24033601 24033652 -158381590 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 188 67 33 0 chr6 24034195 24034225 -158381017 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1261 191 89 18 chr6 24034358 24034517 -158380725 - AluJo SINE Alu -10 302 156 234 0 0 0 chr6 24034517 24034543 -158380699 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1261 191 89 18 chr6 24034543 24034665 -158380577 - AluJo SINE Alu -156 156 1 3686 163 319 64 chr6 24035026 24036379 -158378863 + pTR5 LTR ERV1 741 2438 0 2266 107 3 0 chr6 24037376 24037674 -158377568 + AluSx SINE Alu 1 299 -13 1689 165 65 108 chr6 24038544 24038987 -158376255 + MSTA LTR MaLR 1 424 -4 9096 160 8 18 chr6 24038989 24039226 -158376016 + MSTA-int LTR MaLR 1 239 -1132 2328 94 0 22 chr6 24039226 24039544 -158375698 + AluY SINE Alu 1 311 0 9096 160 8 18 chr6 24039544 24040972 -158374270 + MSTA-int LTR MaLR 239 1370 -1 1797 194 71 22 chr6 24040973 24041381 -158373861 + MSTA LTR MaLR 1 428 0 2189 136 14 27 chr6 24041451 24041820 -158373422 + THE1B LTR MaLR 1 364 0 360 184 11 49 chr6 24041996 24042181 -158373061 + GA-rich Low_complexity Low_complexity 2 179 0 1354 284 99 42 chr6 24042234 24042542 -158372700 + L1ME LINE L1 97 386 -5875 324 0 0 0 chr6 24042542 24042578 -158372664 + (TG)n Simple_repeat Simple_repeat 2 37 0 1354 284 99 42 chr6 24042578 24043547 -158371695 + L1ME LINE L1 386 1299 -4962 2380 63 11 0 chr6 24043547 24043832 -158371410 + AluY SINE Alu 1 288 -23 1354 284 99 42 chr6 24043832 24044076 -158371166 + L1ME LINE L1 1299 1528 -4733 474 18 0 0 chr6 24044076 24044131 -158371111 + (TA)n Simple_repeat Simple_repeat 2 56 0 1354 284 99 42 chr6 24044131 24044290 -158370952 + L1ME LINE L1 1528 1942 -4319 277 259 0 116 chr6 24045363 24045475 -158369767 + MER58 DNA MER1_type 1 99 -2321 472 192 0 19 chr6 24045489 24045593 -158369649 + MER58 DNA MER1_type 2319 2420 0 2234 71 3 0 chr6 24045681 24045963 -158369279 + AluY SINE Alu 25 307 -4 2050 125 7 3 chr6 24046072 24046368 -158368874 + AluSg SINE Alu 1 297 -13 718 286 160 3 chr6 24046445 24046770 -158368472 + MLT1G1 LTR MaLR 6 381 -214 244 164 0 49 chr6 24046830 24046891 -158368351 + MLT1G1 LTR MaLR 474 531 -24 21 0 0 0 chr6 24047631 24047652 -158367590 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr6 24047952 24047988 -158367254 + AT_rich Low_complexity Low_complexity 1 36 0 227 333 104 22 chr6 24050103 24050332 -158364910 - L2 LINE L2 -905 2409 2169 1001 222 15 0 chr6 24050769 24050967 -158364275 - MER20 DNA MER1_type -3 216 16 1529 199 104 40 chr6 24051002 24051500 -158363742 + MER39 LTR ERV1 1 707 0 28 0 0 0 chr6 24052659 24052687 -158362555 + AT_rich Low_complexity Low_complexity 1 28 0 934 195 71 122 chr6 24053356 24053751 -158361491 - MER57A LTR ERV1 0 403 29 2286 95 0 0 chr6 24054128 24054422 -158360820 - AluSg SINE Alu -13 297 4 401 175 0 12 chr6 24056110 24056190 -158359052 - MADE1 DNA Mariner 0 80 2 305 255 78 20 chr6 24056205 24056307 -158358935 + MIR SINE MIR 100 207 -55 1012 187 22 49 chr6 24057193 24057418 -158357824 + MER20 DNA MER1_type 1 219 0 352 326 16 43 chr6 24058629 24058813 -158356429 + MIR SINE MIR 53 231 -31 30 59 0 0 chr6 24059782 24059833 -158355409 + AT_rich Low_complexity Low_complexity 1 51 0 384 77 0 0 chr6 24060157 24060209 -158355033 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1199 94 0 6 chr6 24060221 24060402 -158354840 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 210 191 0 0 chr6 24062298 24062340 -158352902 + GA-rich Low_complexity Low_complexity 2 43 0 335 235 118 39 chr6 24062340 24062493 -158352749 - MER46A DNA MER2_type -71 165 1 * 651 195 0 8 chr6 24062372 24062495 -158352747 + MER46A DNA MER2_type 25 146 -90 605 291 94 10 chr6 24062498 24062701 -158352541 - MIR SINE MIR -41 221 2 609 170 0 0 chr6 24065012 24065124 -158350118 + (CA)n Simple_repeat Simple_repeat 2 113 0 1766 162 10 3 chr6 24065439 24065729 -158349513 - AluSx SINE Alu -20 292 1 211 290 0 29 chr6 24068247 24068316 -158346926 + GA-rich Low_complexity Low_complexity 3 69 0 2240 109 0 7 chr6 24069642 24069946 -158345296 - AluSx SINE Alu -10 302 1 2322 88 3 0 chr6 24070531 24070826 -158344416 + AluSp SINE Alu 1 296 -17 477 243 37 70 chr6 24072075 24072289 -158342953 - L2 LINE L2 -6 3307 3101 30 0 0 0 chr6 24072693 24072723 -158342519 + AT_rich Low_complexity Low_complexity 1 30 0 838 281 129 13 chr6 24073463 24073780 -158341462 + L1MDb LINE L1 7 360 -6049 228 277 80 9 chr6 24073784 24073896 -158341346 + L1MDb LINE L1 416 535 -5874 4217 218 78 30 chr6 24074003 24074703 -158340539 + L1MDb LINE L1 402 1067 -5339 2857 103 41 9 chr6 24074703 24075140 -158340102 + L1PA10 LINE L1 5718 6168 0 4217 218 78 30 chr6 24075140 24077047 -158338195 + L1MDb LINE L1 1067 3143 -3263 1163 85 0 20 chr6 24077047 24077200 -158338042 + AluSx SINE Alu 11 160 -152 555 266 54 15 chr6 24077234 24077493 -158337749 + L1MDb LINE L1 3140 3408 -2998 * 5633 148 30 39 chr6 24077460 24077548 -158337694 + L1PA16 LINE L1 4922 5009 -1417 1802 132 87 13 chr6 24077548 24077858 -158337384 - MER1B DNA MER1_type -4 333 1 5633 148 30 39 chr6 24077858 24079299 -158335943 + L1PA16 LINE L1 5009 6426 0 1773 262 24 25 chr6 24079280 24079743 -158335499 + L1MDb LINE L1 3366 3829 -2577 * 1946 146 7 10 chr6 24079743 24080051 -158335191 - AluSx SINE Alu -5 307 1 1773 262 24 25 chr6 24080051 24080256 -158334986 + L1MDb LINE L1 3829 4033 -2373 1221 274 48 60 chr6 24080528 24081031 -158334211 + LTR33 LTR ERVL 1 497 -24 21 71 0 0 chr6 24081206 24081248 -158333994 + AT_rich Low_complexity Low_complexity 1 42 0 301 364 42 12 chr6 24081320 24081485 -158333757 - MIR3 SINE MIR -29 179 10 43 0 0 19 chr6 24081577 24081589 -158333653 + AT_rich Low_complexity Low_complexity 1 12 -41 2197 55 55 7 chr6 24081589 24081863 -158333379 - AluY SINE Alu -19 292 6 43 0 0 19 chr6 24081863 24081904 -158333338 + AT_rich Low_complexity Low_complexity 12 53 0 27 0 0 0 chr6 24082004 24082031 -158333211 + AT_rich Low_complexity Low_complexity 1 27 0 218 216 34 102 chr6 24084138 24084226 -158331016 + L2 LINE L2 3156 3237 -76 485 343 47 0 chr6 24084641 24084813 -158330429 + MIR3 SINE MIR 16 195 -13 609 231 53 24 chr6 24084860 24085029 -158330213 - MIR SINE MIR 0 262 89 659 318 133 30 chr6 24085051 24085504 -158329738 + L2 LINE L2 2774 3281 -32 225 0 0 0 chr6 24086760 24086785 -158328457 + (TG)n Simple_repeat Simple_repeat 2 26 0 1877 72 22 69 chr6 24087341 24087618 -158327624 + AluY SINE Alu 29 292 -19 2339 89 3 0 chr6 24087702 24088004 -158327238 - AluSx SINE Alu -9 303 1 224 245 0 29 chr6 24088098 24088200 -158327042 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr6 24088200 24088229 -158327013 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr6 24090477 24090514 -158324728 + AT_rich Low_complexity Low_complexity 1 37 0 243 374 145 9 chr6 24090986 24091304 -158323938 - L2 LINE L2 -1032 2282 1922 5409 27 0 0 chr6 24091436 24092064 -158323178 + L1PA3 LINE L1 5525 6152 -3 2065 141 3 0 chr6 24092306 24092603 -158322639 + AluSx SINE Alu 1 298 -14 21 89 0 0 chr6 24092741 24092797 -158322445 + AT_rich Low_complexity Low_complexity 1 56 0 207 213 0 21 chr6 24093655 24093702 -158321540 + A-rich Low_complexity Low_complexity 4 49 0 246 315 134 0 chr6 24094221 24094348 -158320894 + L3b LINE CR1 1242 1385 -198 689 233 66 60 chr6 24094415 24094569 -158320673 - MER69 DNA AcHobo -168 2358 2206 1937 135 3 14 chr6 24094569 24094865 -158320377 + AluJb SINE Alu 1 293 -19 689 233 66 60 chr6 24094865 24095057 -158320185 - MER69 DNA AcHobo -320 2206 2010 * 783 279 85 31 chr6 24095055 24095349 -158319893 - MER69 DNA AcHobo -658 568 259 668 159 65 7 chr6 24095371 24095509 -158319733 + L1MA10 LINE L1 6174 6319 -15 291 295 83 25 chr6 24095525 24095779 -158319463 - LTR41 LTR ERVL 0 795 506 1357 238 40 62 chr6 24096114 24096710 -158318532 + L1M4 LINE L1 4085 4667 -1479 954 247 67 43 chr6 24096903 24097279 -158317963 + L1M4 LINE L1 4597 4981 -1165 590 202 39 39 chr6 24097267 24097445 -158317797 + L1MA10 LINE L1 6155 6332 -2 * 398 254 52 104 chr6 24097874 24098047 -158317195 - MIR3 SINE MIR -4 204 41 21 0 0 0 chr6 24098531 24098552 -158316690 + AT_rich Low_complexity Low_complexity 1 21 0 668 254 90 59 chr6 24098552 24099029 -158316213 - L1ME4a LINE L1 0 6121 5630 335 237 138 26 chr6 24099991 24100154 -158315088 + MIR SINE MIR 3 198 -62 22 0 0 0 chr6 24100253 24100275 -158314967 + AT_rich Low_complexity Low_complexity 1 22 0 2211 100 0 7 chr6 24100442 24100741 -158314501 - AluSq SINE Alu -16 297 1 397 244 211 8 chr6 24100857 24100980 -158314262 - MER5A DNA MER1_type -27 162 15 1152 126 43 91 chr6 24100992 24101222 -158314020 + MER20 DNA MER1_type 1 219 0 183 140 35 53 chr6 24105349 24105406 -158309836 - MER5C DNA MER1_type -106 218 163 330 270 40 30 chr6 24105606 24105706 -158309536 - L2 LINE L2 0 3272 3172 194 349 0 0 chr6 24105898 24105964 -158309278 + MIR SINE MIR 82 147 -115 321 300 56 32 chr6 24105980 24106322 -158308920 + L2 LINE L2 1272 1709 -1605 556 216 0 0 chr6 24106382 24106507 -158308735 - MER3 DNA MER1_type 0 209 85 31 26 0 0 chr6 24107670 24107708 -158307534 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 71 chr6 24107947 24107989 -158307253 + AT_rich Low_complexity Low_complexity 1 39 0 3077 150 42 85 chr6 24107989 24108219 -158307023 + L1MB3 LINE L1 5445 5683 -500 1754 53 80 0 chr6 24108219 24108444 -158306798 + AluY SINE Alu 41 283 -28 3077 150 42 85 chr6 24108444 24108978 -158306264 + L1MB3 LINE L1 5683 6176 -7 294 247 21 10 chr6 24108978 24109075 -158306167 + (TA)n Simple_repeat Simple_repeat 1 98 0 590 301 55 47 chr6 24109083 24109319 -158305923 - MIR SINE MIR -20 242 5 5620 148 9 53 chr6 24109541 24111382 -158303860 - L1PB1 LINE L1 -1 6150 4396 2744 90 3 8 chr6 24161665 24162052 -158253190 + L1PA13 LINE L1 5777 6161 -2 1294 212 60 92 chr6 24162149 24162190 -158253052 - LTR54B LTR ERV1 -3 495 454 1493 88 5 0 chr6 24162190 24162405 -158252837 - L1PA7 LINE L1 -6 6148 5933 1294 212 60 92 chr6 24162405 24162449 -158252793 - LTR54B LTR ERV1 -44 454 410 2575 43 0 0 chr6 24162449 24162750 -158252492 + AluY SINE Alu 1 301 -10 1294 212 60 92 chr6 24162750 24163164 -158252078 - LTR54B LTR ERV1 -88 410 11 848 191 29 34 chr6 24163734 24163943 -158251299 + MER3 DNA MER1_type 1 208 -1 204 327 0 89 chr6 24164096 24164128 -158251114 + L2 LINE L2 3146 3179 -93 2448 50 0 0 chr6 24164128 24164431 -158250811 + L1PA8 LINE L1 5870 6172 0 204 327 0 89 chr6 24164431 24164499 -158250743 + L2 LINE L2 3179 3237 -35 226 224 13 105 chr6 24164539 24164615 -158250627 - MIR3 SINE MIR -1 207 139 676 283 97 72 chr6 24164681 24165123 -158250119 + MLT1L LTR MaLR 110 562 -53 1261 271 162 9 chr6 24165152 24165583 -158249659 - MLT1E LTR MaLR -96 497 1 181 344 67 0 chr6 24165583 24165673 -158249569 - MIR SINE MIR -58 150 55 340 353 27 0 chr6 24165707 24165894 -158249348 + MIR SINE MIR 70 261 -1 419 211 9 44 chr6 24166769 24166883 -158248359 - MIR SINE MIR 0 262 153 23 54 0 0 chr6 24167207 24167244 -158247998 + AT_rich Low_complexity Low_complexity 1 37 0 2035 143 0 7 chr6 24167428 24167729 -158247513 - AluSx SINE Alu -13 299 1 10320 202 49 54 chr6 24168951 24174512 -158240730 + L1MC1 LINE L1 46 5575 -1038 1306 212 24 28 chr6 24174512 24174800 -158240442 + AluJo SINE Alu 3 289 -23 10320 202 49 54 chr6 24174800 24175828 -158239414 + L1MC1 LINE L1 5575 6607 -6 217 147 80 0 chr6 24176539 24176614 -158238628 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 57 0 0 chr6 24177006 24177041 -158238201 + AT_rich Low_complexity Low_complexity 1 35 0 213 333 49 25 chr6 24178101 24178182 -158237060 - L2 LINE L2 -72 3200 3118 822 333 102 34 chr6 24179871 24180403 -158234839 - L2 LINE L2 -448 2866 2299 254 217 42 25 chr6 24180857 24180977 -158234265 + (TA)n Simple_repeat Simple_repeat 2 123 0 1908 179 14 19 chr6 24181458 24181821 -158233421 + MLT1A1 LTR MaLR 5 365 0 278 317 106 8 chr6 24183044 24183167 -158232075 - MIR SINE MIR -108 154 20 207 188 0 0 chr6 24183566 24183614 -158231628 + (TG)n Simple_repeat Simple_repeat 2 49 0 235 261 144 0 chr6 24184008 24184119 -158231123 - L1MC/D LINE L1 -1923 5885 5759 2113 124 0 0 chr6 24184221 24184512 -158230730 + AluSc SINE Alu 1 291 -18 363 44 0 0 chr6 24184512 24184557 -158230685 + (TA)n Simple_repeat Simple_repeat 1 45 0 426 346 112 23 chr6 24184575 24184968 -158230274 - L1MC/D LINE L1 -2124 5684 5257 2448 87 0 0 chr6 24185063 24185374 -158229868 + AluY SINE Alu 1 311 0 346 291 26 93 chr6 24185690 24185841 -158229401 - MIR3 SINE MIR -9 199 59 27 0 0 0 chr6 24187165 24187192 -158228050 + AT_rich Low_complexity Low_complexity 1 27 0 253 0 0 51 chr6 24188700 24188739 -158226503 + (CATA)n Simple_repeat Simple_repeat 4 40 0 762 306 101 8 chr6 24190708 24190956 -158224286 - HERV16 LTR ERVL -1901 3095 2825 668 246 7 7 chr6 24191305 24191443 -158223799 - L2 LINE L2 0 3313 3176 272 27 27 0 chr6 24191448 24191485 -158223757 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1295 310 44 45 chr6 24191513 24192099 -158223143 - L2 LINE L2 -310 3003 2421 2070 267 116 45 chr6 24192109 24193005 -158222237 - L2 LINE L2 -2328 986 27 195 259 19 0 chr6 24193727 24193781 -158221461 + L2 LINE L2 3256 3310 -3 234 273 0 15 chr6 24193846 24193912 -158221330 - L2 LINE L2 -1 3312 3248 1039 200 192 90 chr6 24194107 24194270 -158220972 - MLT1D LTR MaLR 0 505 360 1975 115 7 4 chr6 24194270 24194540 -158220702 + AluSc SINE Alu 24 294 -15 1039 200 192 90 chr6 24194540 24194830 -158220412 - MLT1D LTR MaLR -145 360 6 259 133 17 17 chr6 24197799 24197859 -158217383 + (TA)n Simple_repeat Simple_repeat 1 60 0 394 293 61 7 chr6 24198280 24198427 -158216815 + MIR SINE MIR 100 254 -8 21 0 0 0 chr6 24199198 24199219 -158216023 + AT_rich Low_complexity Low_complexity 1 21 0 2383 84 3 0 chr6 24200194 24200493 -158214749 - AluSx SINE Alu -12 300 1 187 333 10 21 chr6 24200572 24200668 -158214574 + L2 LINE L2 2288 2382 -932 185 342 45 58 chr6 24200811 24200966 -158214276 + L2 LINE L2 2568 2720 -594 190 337 68 44 chr6 24201131 24201336 -158213906 + L2 LINE L2 2933 3142 -130 494 270 16 0 chr6 24201708 24201834 -158213408 - MER94 DNA DNA -3 131 4 280 249 3 31 chr6 24204344 24204466 -158210776 + L1ME3 LINE L1 5271 5389 -781 428 329 124 9 chr6 24204470 24204792 -158210450 + L1ME3 LINE L1 5561 5919 -243 1131 157 0 0 chr6 24204892 24205070 -158210172 - AluSg/x SINE Alu -2 310 133 1979 91 76 0 chr6 24205880 24206156 -158209086 - AluSq SINE Alu -16 297 1 358 247 54 11 chr6 24206893 24206986 -158208256 - L2 LINE L2 -16 3297 3201 202 375 109 11 chr6 24207141 24207408 -158207834 - L2 LINE L2 -1862 1452 1160 370 351 18 0 chr6 24208442 24208553 -158206689 + MIR3 SINE MIR 72 184 -24 417 188 9 18 chr6 24209725 24209837 -158205405 + GA-rich Low_complexity Low_complexity 1 111 0 2255 102 0 0 chr6 24210974 24211269 -158203973 + AluSc SINE Alu 1 295 -14 377 336 102 8 chr6 24211569 24211813 -158203429 + MLT1J LTR MaLR 52 318 -193 8196 64 13 3 chr6 24212745 24213805 -158201437 + MER11C LTR ERVK 1 1071 0 291 172 52 17 chr6 24213831 24213889 -158201353 - LTR40b LTR ERVL -1 461 402 317 141 14 0 chr6 24213894 24213965 -158201277 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 286 191 75 21 chr6 24213988 24214082 -158201160 - LTR40b LTR ERVL -98 364 266 244 219 0 85 chr6 24214375 24214457 -158200785 - LTR40a LTR ERVL -444 75 1 437 341 29 29 chr6 24214494 24214667 -158200575 - MIR SINE MIR -77 185 13 208 289 117 16 chr6 24214742 24214870 -158200372 + L2 LINE L2 3172 3312 -1 22 35 0 0 chr6 24218360 24218389 -158196853 + AT_rich Low_complexity Low_complexity 1 29 0 686 204 14 0 chr6 24218579 24218726 -158196516 - L1MB1 LINE L1 -3 6165 6017 336 24 0 0 chr6 24218907 24218948 -158196294 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr6 24219697 24219722 -158195520 + AT_rich Low_complexity Low_complexity 1 25 0 663 279 10 32 chr6 24220760 24220985 -158194257 - MIR SINE MIR 0 262 47 330 176 44 11 chr6 24221981 24222072 -158193170 - L1MEc LINE L1 -4082 2314 2221 * 2302 251 156 10 chr6 24222068 24223039 -158192203 + L1M4 LINE L1 3707 4818 -1328 312 255 0 21 chr6 24223133 24223227 -158192015 + L1MC4 LINE L1 6612 6703 -1339 339 243 43 0 chr6 24223256 24223326 -158191916 - Tigger3(Golem) DNA MER2_type -1 3028 2956 2481 57 0 0 chr6 24223514 24223810 -158191432 - AluY SINE Alu -15 296 1 894 180 22 61 chr6 24223900 24224128 -158191114 + MER20 DNA MER1_type 1 219 0 2103 185 4 65 chr6 24224235 24224694 -158190548 + MSTB1 LTR MaLR 1 431 -1 23 0 0 0 chr6 24224927 24224950 -158190292 + AT_rich Low_complexity Low_complexity 1 23 0 2399 77 3 0 chr6 24226742 24227042 -158188200 + AluSx SINE Alu 1 301 -11 731 251 158 35 chr6 24227685 24228084 -158187158 + MLT1J2 LTR MaLR 1 448 -2 259 154 0 0 chr6 24228325 24228411 -158186831 - AluSc SINE Alu 0 332 247 1169 148 0 0 chr6 24228411 24228587 -158186655 - AluSx SINE Alu -136 176 1 387 268 0 0 chr6 24228855 24228937 -158186305 - L2 LINE L2 -6 3307 3226 22 0 0 0 chr6 24229971 24229993 -158185249 + AT_rich Low_complexity Low_complexity 1 22 0 976 152 7 0 chr6 24231299 24231466 -158183776 + FRAM SINE Alu 1 168 0 674 333 118 18 chr6 24231518 24231900 -158183342 - LTR33 LTR ERVL 0 521 102 300 276 35 0 chr6 24232437 24232524 -158182718 - MIR SINE MIR -92 170 81 405 240 240 27 chr6 24232747 24232972 -158182270 + L2 LINE L2 3041 3313 0 1914 149 0 7 chr6 24234726 24235022 -158180220 - AluSx SINE Alu -17 295 2 2162 76 13 48 chr6 24236114 24236429 -158178813 + AluSc SINE Alu 1 304 -5 798 248 60 54 chr6 24237029 24237562 -158177680 + L1M4 LINE L1 2883 3418 -2728 23 33 0 0 chr6 24237599 24237629 -158177613 + AT_rich Low_complexity Low_complexity 1 30 0 334 152 38 0 chr6 24237819 24237898 -158177344 + L1M4 LINE L1 3886 3967 -2179 21 0 0 0 chr6 24237993 24238014 -158177228 + AT_rich Low_complexity Low_complexity 1 21 0 285 300 71 0 chr6 24238090 24238230 -158177012 + L1M4 LINE L1 4455 4604 -1542 * 328 190 10 50 chr6 24238223 24238323 -158176919 - L1ME1 LINE L1 -232 5934 5839 * 347 147 20 108 chr6 24238305 24238407 -158176835 - L1MEc LINE L1 -6269 127 35 22 0 0 0 chr6 24238478 24238500 -158176742 + AT_rich Low_complexity Low_complexity 1 22 0 246 325 52 26 chr6 24239229 24239306 -158175936 + L2 LINE L2 3112 3190 -82 1120 291 94 31 chr6 24241604 24242184 -158173058 + L2 LINE L2 2704 3313 0 200 286 52 39 chr6 24242257 24242334 -158172908 - MIR SINE MIR -8 254 177 536 206 10 0 chr6 24242339 24242436 -158172806 - MER2 DNA MER2_type -247 98 1 377 306 75 7 chr6 24242457 24242604 -158172638 - MIR SINE MIR -95 167 11 1360 180 3 73 chr6 24243307 24243607 -158171635 + AluJo SINE Alu 4 282 -30 7530 30 0 0 chr6 24243627 24244666 -158170576 - L1PA4 LINE L1 -8 6147 5109 2880 32 0 0 chr6 24244666 24245011 -158170231 + L1PA4 LINE L1 4753 5097 -1049 494 286 71 71 chr6 24245191 24245600 -158169642 + HAL1 LINE L1 43 451 -2056 204 230 324 0 chr6 24246691 24246765 -158168477 + L2 LINE L2 3197 3294 -19 1398 219 40 23 chr6 24248449 24248796 -158166446 + MLT1A1 LTR MaLR 1 353 -12 21 0 0 0 chr6 24248900 24248921 -158166321 + AT_rich Low_complexity Low_complexity 1 21 0 491 289 29 33 chr6 24250002 24250256 -158164986 + L1MDa LINE L1 1710 2066 -835 2105 129 3 0 chr6 24250256 24250558 -158164684 - AluSx SINE Alu -9 303 1 491 289 29 33 chr6 24250558 24250606 -158164636 + L1MDa LINE L1 2066 2113 -788 48 72 0 0 chr6 24250628 24250725 -158164517 + AT_rich Low_complexity Low_complexity 1 97 0 369 267 59 34 chr6 24251139 24251375 -158163867 + L1MDa LINE L1 2689 2930 -3610 23 54 0 0 chr6 24253503 24253540 -158161702 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr6 24254908 24254945 -158160297 + AT_rich Low_complexity Low_complexity 1 37 0 258 167 0 0 chr6 24259330 24259390 -158155852 + (CGG)n Simple_repeat Simple_repeat 2 61 0 198 0 0 0 chr6 24259864 24259886 -158155356 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 278 346 109 6 chr6 24261665 24261821 -158153421 - MIR SINE MIR -71 191 20 634 316 56 16 chr6 24261908 24262158 -158153084 - MIR SINE MIR -1 261 2 352 212 24 0 chr6 24262659 24262744 -158152498 + L1PB4 LINE L1 6069 6155 -1 193 305 128 48 chr6 24264895 24265082 -158150160 + L2 LINE L2 3112 3313 0 286 367 166 20 chr6 24265443 24265642 -158149600 + MIR SINE MIR 29 256 -6 486 0 0 0 chr6 24265768 24265822 -158149420 + (TA)n Simple_repeat Simple_repeat 2 55 0 273 300 64 0 chr6 24266920 24267030 -158148212 - L2 LINE L2 -62 3251 3135 598 297 36 56 chr6 24267307 24267556 -158147686 - L2 LINE L2 -19 3294 3051 210 37 0 0 chr6 24273715 24273742 -158141500 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chr6 24273966 24274002 -158141240 + AT_rich Low_complexity Low_complexity 1 36 0 249 340 53 101 chr6 24275176 24275552 -158139690 - L2 LINE L2 -1 3271 2914 1964 251 89 50 chr6 24275729 24276673 -158138569 + Zaphod DNA AcHobo 9 989 -3042 934 253 110 15 chr6 24276672 24277071 -158138171 + Zaphod DNA AcHobo 3595 4031 0 * 443 253 12 124 chr6 24278757 24279006 -158136236 + MIR SINE MIR 42 262 0 2361 118 25 3 chr6 24280598 24280954 -158134288 - THE1B LTR MaLR 0 364 1 1424 220 67 9 chr6 24281975 24282411 -158132831 + Charlie4a DNA MER1_type 47 507 -1 403 269 70 41 chr6 24283188 24283323 -158131919 + MIR SINE MIR 14 156 -106 414 39 0 0 chr6 24283323 24283375 -158131867 + (CAT)n Simple_repeat Simple_repeat 3 54 0 403 269 70 41 chr6 24283375 24283410 -158131832 + MIR SINE MIR 156 189 -73 741 289 121 46 chr6 24283954 24284408 -158130834 + L2 LINE L2 2373 2860 -454 352 333 9 9 chr6 24284717 24284825 -158130417 + L2 LINE L2 3163 3270 -2 214 355 145 15 chr6 24284826 24285026 -158130216 + L2 LINE L2 2225 2450 -864 274 273 0 26 chr6 24285450 24285527 -158129715 - MER5A DNA MER1_type -83 106 32 462 320 87 7 chr6 24285555 24285705 -158129537 + L2 LINE L2 3103 3264 -8 237 65 0 0 chr6 24286167 24286198 -158129044 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 263 0 0 chr6 24287375 24287432 -158127810 + GA-rich Low_complexity Low_complexity 4 60 0 25 31 0 0 chr6 24288519 24288551 -158126691 + AT_rich Low_complexity Low_complexity 1 32 0 340 177 127 0 chr6 24288984 24289063 -158126179 - LTR33 LTR ERVL -18 503 415 * 491 290 87 22 chr6 24289058 24289241 -158126001 - LTR33 LTR ERVL -212 309 115 291 28 0 0 chr6 24289317 24289353 -158125889 + (CA)n Simple_repeat Simple_repeat 1 36 0 1788 178 0 7 chr6 24290014 24290306 -158124936 + AluJo SINE Alu 1 290 -22 2488 129 3 0 chr6 24290609 24290972 -158124270 + THE1B LTR MaLR 1 364 0 603 315 103 28 chr6 24291261 24291779 -158123463 + L2 LINE L2 2686 3228 -85 258 32 0 0 chr6 24291821 24291852 -158123390 + (CA)n Simple_repeat Simple_repeat 1 31 0 1499 75 5 0 chr6 24292013 24292242 -158123000 + AluY SINE Alu 97 326 0 1841 146 22 41 chr6 24292883 24293198 -158122044 - AluJo SINE Alu -3 309 1 1169 246 97 68 chr6 24293199 24293775 -158121467 - L1ME3A LINE L1 -213 5957 5365 360 364 0 7 chr6 24293798 24293938 -158121304 - MER91B DNA MER1_type -28 162 24 357 43 0 0 chr6 24294349 24294396 -158120846 + (CA)n Simple_repeat Simple_repeat 2 48 0 584 126 10 0 chr6 24296531 24296634 -158118608 + L1MA8 LINE L1 6185 6288 -3 425 316 86 6 chr6 24296651 24296825 -158118417 + MLT1J LTR MaLR 3 190 -321 1561 148 71 53 chr6 24298151 24298388 -158116854 - MER2 DNA MER2_type 0 344 98 2151 118 3 0 chr6 24298388 24298676 -158116566 - AluSx SINE Alu -20 292 4 1561 148 71 53 chr6 24298676 24298776 -158116466 - MER2 DNA MER2_type -246 98 1 2303 109 0 0 chr6 24299972 24300283 -158114959 - AluSx SINE Alu -1 311 1 243 295 84 63 chr6 24302128 24302223 -158113019 + MIR SINE MIR 37 133 -75 206 354 19 50 chr6 24302896 24303057 -158112185 - MIR SINE MIR -75 187 32 288 0 0 0 chr6 24303235 24303267 -158111975 + (CA)n Simple_repeat Simple_repeat 2 33 0 926 172 59 5 chr6 24304883 24305086 -158110156 + L1MB2 LINE L1 5956 6169 -2 647 335 16 12 chr6 24305179 24305436 -158109806 + MIR SINE MIR 5 262 0 23 33 0 0 chr6 24305465 24305495 -158109747 + AT_rich Low_complexity Low_complexity 1 30 0 342 247 12 12 chr6 24305563 24305644 -158109598 + HAL1b LINE L1 65 145 -1203 783 296 34 24 chr6 24305976 24306270 -158108972 - MER102b DNA MER1_type 0 341 45 21 36 0 0 chr6 24306544 24306572 -158108670 + AT_rich Low_complexity Low_complexity 1 28 0 718 226 153 11 chr6 24307041 24307231 -158108011 + MER58A DNA MER1_type 6 222 -2 21 36 0 0 chr6 24307415 24307443 -158107799 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 24307587 24307616 -158107626 + AT_rich Low_complexity Low_complexity 1 29 0 236 262 36 0 chr6 24307742 24307826 -158107416 + L1M4 LINE L1 2378 2464 -3682 1879 226 78 31 chr6 24307826 24308502 -158106740 - L1MEc LINE L1 -3935 2890 2183 336 265 25 101 chr6 24308695 24308933 -158106309 - L1MEc LINE L1 -4811 1833 1517 735 39 64 29 chr6 24308933 24309556 -158105686 + (TA)n Simple_repeat Simple_repeat 1 645 0 580 271 109 26 chr6 24309557 24309818 -158105424 - L1MEc LINE L1 -5176 1649 1352 518 35 0 128 chr6 24309818 24309855 -158105387 + MADE1 DNA Mariner 3 24 -56 2269 96 7 0 chr6 24309855 24310147 -158105095 - AluSg SINE Alu -16 294 1 518 35 0 128 chr6 24310147 24310195 -158105047 + MADE1 DNA Mariner 24 77 -3 580 271 109 26 chr6 24310195 24310273 -158104969 - L1MEc LINE L1 -5473 1352 1282 385 148 267 40 chr6 24310311 24310412 -158104830 - MER58B DNA MER1_type -1 340 217 2252 111 0 0 chr6 24312498 24312796 -158102446 + AluSx SINE Alu 1 298 -14 187 315 157 0 chr6 24314644 24314733 -158100509 + L2 LINE L2 3207 3309 -4 1452 137 0 21 chr6 24315464 24315697 -158099545 - MER30 DNA MER1_type 0 230 3 1184 260 67 48 chr6 24315883 24316467 -158098775 - L1ME LINE L1 -4910 1170 599 207 0 0 0 chr6 24316467 24316490 -158098752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1548 96 0 5 chr6 24316492 24316689 -158098553 - AluSc SINE Alu -31 278 83 1184 260 67 48 chr6 24316689 24316779 -158098463 - L1ME LINE L1 -5481 599 501 201 122 24 24 chr6 24317207 24317248 -158097994 + A-rich Low_complexity Low_complexity 2 42 0 2538 94 39 0 chr6 24317494 24317875 -158097367 - L1PA13 LINE L1 0 6163 5768 246 62 0 0 chr6 24317878 24317910 -158097332 + U5 snRNA snRNA 9 40 -76 194 125 0 25 chr6 24318124 24318164 -158097078 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 275 261 100 109 chr6 24318570 24318800 -158096442 - L3 LINE CR1 -179 1398 1171 180 359 0 33 chr6 24318822 24318914 -158096328 + MER5A DNA MER1_type 17 105 -84 317 336 40 24 chr6 24319514 24319639 -158095603 - MER5B DNA MER1_type -50 128 2 481 141 0 0 chr6 24320875 24320953 -158094289 + MADE1 DNA Mariner 1 78 -2 279 356 0 0 chr6 24320991 24321078 -158094164 + LTR67 LTR ERVL 130 216 -341 498 238 32 8 chr6 24321259 24321385 -158093857 + LTR67 LTR ERVL 429 557 0 2178 119 0 10 chr6 24323147 24323458 -158091784 + AluSx SINE Alu 1 308 -4 247 286 16 0 chr6 24323478 24323541 -158091701 + MER91B DNA MER1_type 6 69 -121 545 168 63 0 chr6 24323767 24323862 -158091380 - Tigger7 DNA MER2_type -1 2486 2386 * 689 130 35 9 chr6 24323852 24323967 -158091275 - Tigger7 DNA MER2_type -300 433 316 994 140 11 17 chr6 24323982 24324160 -158091082 - L1PB3 LINE L1 -7 6147 5971 2127 236 19 28 chr6 24324171 24324747 -158090495 - L1ME1 LINE L1 -174 5992 5422 237 372 31 16 chr6 24324982 24325111 -158090131 + L2 LINE L2 3183 3313 0 725 275 17 43 chr6 24325309 24325542 -158089700 - MIR SINE MIR 0 262 36 3123 175 88 14 chr6 24326825 24327382 -158087860 - MER44D DNA MER2_type -1882 705 90 2191 96 0 40 chr6 24327382 24327684 -158087558 + AluSg SINE Alu 1 290 -20 3123 175 88 14 chr6 24327684 24327782 -158087460 - MER44D DNA MER2_type -2497 90 1 250 366 84 8 chr6 24329340 24329471 -158085771 + L2 LINE L2 3132 3272 0 3299 72 21 0 chr6 24330348 24330781 -158084461 + MLT2A1 LTR ERVL 3 444 0 2373 84 0 0 chr6 24330813 24331111 -158084131 - AluY SINE Alu -13 298 1 229 365 47 0 chr6 24331279 24331386 -158083856 + MIR SINE MIR 3 114 -148 567 261 114 93 chr6 24331387 24331817 -158083425 + MLT1J1 LTR MaLR 3 441 -5 198 266 98 84 chr6 24331831 24331974 -158083268 + MIR SINE MIR 118 262 0 2390 83 32 69 chr6 24332912 24333319 -158081923 - MER48 LTR ERV1 -2 396 5 415 222 11 38 chr6 24334047 24334232 -158081010 + (TA)n Simple_repeat Simple_repeat 1 180 0 187 400 0 15 chr6 24334370 24334435 -158080807 + MIR SINE MIR 85 148 -60 23 0 0 0 chr6 24334746 24334769 -158080473 + AT_rich Low_complexity Low_complexity 1 23 0 2059 90 3 21 chr6 24335378 24335710 -158079532 - AluSq SINE Alu 0 327 1 585 336 21 21 chr6 24337812 24338053 -158077189 - MIR SINE MIR -15 247 7 807 147 32 108 chr6 24338491 24338742 -158076500 - Charlie1b DNA MER1_type -7 516 285 1049 120 54 0 chr6 24338756 24338923 -158076319 + MSTB2 LTR MaLR 1 176 -281 831 216 0 12 chr6 24338925 24339087 -158076155 - FRAM SINE Alu -17 159 1 1578 178 31 7 chr6 24339087 24339373 -158075869 + MSTB2 LTR MaLR 165 457 0 1061 243 39 4 chr6 24339373 24339632 -158075610 - Charlie1b DNA MER1_type -255 268 1 2061 96 3 81 chr6 24339752 24340075 -158075167 - AluSq SINE Alu -13 300 3 21 0 0 0 chr6 24340120 24340141 -158075101 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 24340395 24340418 -158074824 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr6 24341478 24341501 -158073741 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1901 153 0 10 chr6 24341509 24341804 -158073438 - AluJb SINE Alu -20 292 1 2382 90 3 0 chr6 24342394 24342694 -158072548 - AluSp SINE Alu -12 301 1 22 35 0 0 chr6 24342735 24342764 -158072478 + AT_rich Low_complexity Low_complexity 1 29 0 515 309 124 9 chr6 24344209 24344426 -158070816 + MIR SINE MIR 21 262 0 185 373 0 34 chr6 24348769 24348887 -158066355 + MIR3 SINE MIR 94 207 -1 524 305 30 25 chr6 24348934 24349131 -158066111 + MIR SINE MIR 15 212 -50 186 43 0 0 chr6 24349483 24349506 -158065736 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 406 360 23 11 chr6 24349564 24349739 -158065503 + MIR3 SINE MIR 28 204 -4 221 300 17 0 chr6 24349935 24349995 -158065247 - L2 LINE L2 -8 3264 3204 498 299 58 0 chr6 24350292 24350429 -158064813 + MIR SINE MIR 8 152 -110 215 374 79 14 chr6 24350694 24350908 -158064334 - L2 LINE L2 -834 2480 2253 684 171 173 11 chr6 24350966 24351168 -158064074 - MER33 DNA MER1_type -262 62 1 314 349 76 8 chr6 24351181 24351313 -158063929 - L2 LINE L2 0 3272 3132 1986 99 22 0 chr6 24351416 24351712 -158063530 - AluSg SINE Alu 0 304 3 315 345 94 27 chr6 24351787 24352115 -158063127 - L2 LINE L2 -107 3165 2816 225 320 52 56 chr6 24352198 24352429 -158062813 - L2 LINE L2 -1231 2083 1854 2152 103 36 3 chr6 24352679 24352981 -158062261 - AluSx SINE Alu 0 312 1 331 308 145 9 chr6 24353256 24353470 -158061772 - MIR SINE MIR -13 249 7 207 222 37 19 chr6 24354136 24354190 -158061052 + MIR SINE MIR 121 175 -87 246 32 0 0 chr6 24357408 24357439 -158057803 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 342 25 38 chr6 24358217 24358296 -158056946 + MIR SINE MIR 56 133 -75 394 381 118 23 chr6 24358511 24358910 -158056332 - L2 LINE L2 -21 3251 2815 257 273 0 0 chr6 24359869 24359924 -158055318 + polypyrimidine Low_complexity Low_complexity 6 60 0 630 257 23 6 chr6 24361497 24361668 -158053574 - L1ME3 LINE L1 -10 6152 5979 5393 156 48 16 chr6 24363559 24364584 -158050658 + L1MA7 LINE L1 4772 5859 -432 2126 69 4 4 chr6 24364584 24364861 -158050381 + AluY SINE Alu 22 298 -13 5393 156 48 16 chr6 24364861 24365309 -158049933 + L1MA7 LINE L1 5859 6291 0 192 77 0 0 chr6 24367567 24367593 -158047649 + (TA)n Simple_repeat Simple_repeat 2 27 0 548 318 57 0 chr6 24368011 24368203 -158047039 + MIR SINE MIR 58 260 -2 1440 70 0 0 chr6 24368876 24369062 -158046180 - L1PA7 LINE L1 -2 6152 5967 2476 222 30 29 chr6 24370107 24370324 -158044918 + L1PA6 LINE L1 4815 5030 -1124 1497 162 0 34 chr6 24370324 24370590 -158044652 - AluJb SINE Alu -21 291 35 2476 222 30 29 chr6 24370590 24371436 -158043806 + L1PA6 LINE L1 5030 5873 -281 300 378 51 0 chr6 24371436 24371632 -158043610 + L1ME LINE L1 5567 5772 -392 477 275 269 0 chr6 24373178 24373360 -158041882 + MIR SINE MIR 2 232 -30 1361 235 38 35 chr6 24373365 24373761 -158041481 + MLT2C1 LTR ERVL 1 397 0 1967 131 3 3 chr6 24374182 24374473 -158040769 - AluSx SINE Alu -21 291 1 317 269 66 51 chr6 24375518 24375689 -158039553 + MIR SINE MIR 18 191 -66 820 281 12 36 chr6 24375845 24376098 -158039144 - MIR SINE MIR -15 247 1 23 0 0 0 chr6 24376671 24376694 -158038548 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr6 24376859 24376884 -158038358 + AT_rich Low_complexity Low_complexity 1 25 0 429 311 77 16 chr6 24377010 24377193 -158038049 - MIR SINE MIR -56 206 13 280 187 198 55 chr6 24377616 24377707 -158037535 + MER69A DNA AcHobo 5 108 -69 460 292 65 18 chr6 24378726 24378894 -158036348 - MER5B DNA MER1_type -1 177 2 3728 56 2 0 chr6 24379047 24379515 -158035727 + L1PA7 LINE L1 5683 6151 -3 21 0 0 0 chr6 24379527 24379548 -158035694 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr6 24379625 24379650 -158035592 + AT_rich Low_complexity Low_complexity 1 25 0 426 219 0 109 chr6 24379712 24379831 -158035411 + MER81 DNA DNA 9 114 0 934 125 6 28 chr6 24380707 24380883 -158034359 + L1MA4 LINE L1 6123 6294 -6 755 199 7 0 chr6 24380911 24381057 -158034185 - L1ME1 LINE L1 -329 5837 5691 305 152 65 33 chr6 24381104 24381196 -158034046 - MER53 DNA DNA 0 189 95 358 307 42 18 chr6 24381898 24382064 -158033178 + MLT1H LTR MaLR 57 226 -323 787 250 105 34 chr6 24382345 24382753 -158032489 - Zaphod DNA AcHobo 0 4031 3595 333 155 36 101 chr6 24382755 24382974 -158032268 - Zaphod DNA AcHobo -3059 972 768 198 294 0 0 chr6 24383755 24383806 -158031436 - L2 LINE L2 -13 3300 3250 24 32 0 0 chr6 24384108 24384139 -158031103 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr6 24384207 24384240 -158031002 + AT_rich Low_complexity Low_complexity 1 33 0 1950 170 16 34 chr6 24384240 24384623 -158030619 - MLT1B LTR MaLR 0 390 15 492 333 31 13 chr6 24384773 24385001 -158030241 - MIR SINE MIR 0 262 31 23 0 0 0 chr6 24386313 24386336 -158028906 + AT_rich Low_complexity Low_complexity 1 23 0 1675 193 57 79 chr6 24390009 24390516 -158024726 - MLT1D LTR MaLR -8 497 2 246 351 87 54 chr6 24390769 24391284 -158023958 - L2 LINE L2 -418 2896 2365 324 298 140 28 chr6 24391843 24391910 -158023332 + L3 LINE CR1 67 125 -1452 2670 128 21 9 chr6 24391910 24392333 -158022909 - MSTA LTR MaLR 0 428 1 324 298 140 28 chr6 24392333 24392443 -158022799 + L3 LINE CR1 125 264 -1313 553 314 173 28 chr6 24392554 24393085 -158022157 + L3 LINE CR1 716 1323 -254 225 269 60 15 chr6 24393097 24393164 -158022078 - MER34C LTR ERV1 0 585 516 260 66 49 16 chr6 24393172 24393233 -158022009 + (TA)n Simple_repeat Simple_repeat 1 63 0 622 235 50 102 chr6 24393234 24393634 -158021608 - MER39 LTR ERV1 -69 638 260 318 208 42 62 chr6 24393609 24393705 -158021537 - LTR48B LTR ERV1 -547 97 4 * 279 316 68 28 chr6 24393709 24393886 -158021356 + L3 LINE CR1 1350 1533 -44 1784 106 110 7 chr6 24393938 24394211 -158021031 + AluSg SINE Alu 1 301 -9 360 217 65 0 chr6 24394490 24394582 -158020660 - MER5A DNA MER1_type -83 106 9 245 309 249 12 chr6 24394699 24394864 -158020378 + MIR SINE MIR 56 259 -3 246 296 22 52 chr6 24398001 24398136 -158017106 + L2 LINE L2 2925 3055 -217 242 235 12 0 chr6 24398490 24398571 -158016671 + (TA)n Simple_repeat Simple_repeat 1 82 0 186 103 0 0 chr6 24398589 24398618 -158016624 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 277 25 17 chr6 24401174 24401293 -158013949 + L1ME4a LINE L1 5955 6074 -47 431 18 18 0 chr6 24401661 24401717 -158013525 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 870 84 17 0 chr6 24401982 24402101 -158013141 - AluSg/x SINE Alu -18 292 172 300 111 0 0 chr6 24402102 24402147 -158013095 + (T)n Simple_repeat Simple_repeat 1 45 0 205 261 87 14 chr6 24403114 24403183 -158012059 + MIR SINE MIR 30 103 -105 845 196 12 6 chr6 24403309 24403472 -158011770 - FRAM SINE Alu -12 164 1 22 35 0 0 chr6 24404522 24404551 -158010691 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 24405525 24405545 -158009697 + (A)n Simple_repeat Simple_repeat 1 20 0 215 154 0 26 chr6 24406554 24406593 -158008649 + GA-rich Low_complexity Low_complexity 2 39 0 217 159 32 0 chr6 24406666 24406729 -158008513 + GA-rich Low_complexity Low_complexity 1 65 0 322 265 341 0 chr6 24408901 24409033 -158006209 + MIR SINE MIR 9 185 -77 216 143 0 0 chr6 24409806 24409848 -158005394 + (TG)n Simple_repeat Simple_repeat 2 43 0 808 210 10 72 chr6 24410128 24410267 -158004975 - MER5A DNA MER1_type -6 183 58 2265 71 6 16 chr6 24410267 24410578 -158004664 + AluYb8 SINE Alu 1 308 -10 808 210 10 72 chr6 24410578 24410633 -158004609 - MER5A DNA MER1_type -131 58 1 372 270 74 60 chr6 24410740 24410955 -158004287 + MLT1G LTR MaLR 75 292 -298 229 225 12 38 chr6 24411135 24411215 -158004027 + MLT1G LTR MaLR 390 467 0 1098 166 10 20 chr6 24411648 24411847 -158003395 + AluJo SINE Alu 1 197 -115 185 283 0 33 chr6 24461872 24461932 -157953310 + MIR SINE MIR 156 213 -49 24 32 0 0 chr6 24462269 24462300 -157952942 + AT_rich Low_complexity Low_complexity 1 31 0 2841 0 0 3 chr6 24462433 24462741 -157952501 - AluYa5 SINE Alu -4 307 1 1938 217 125 96 chr6 24462922 24464104 -157951138 - L1MC5 LINE L1 -49 7912 6697 198 0 0 0 chr6 24465625 24465647 -157949595 + (T)n Simple_repeat Simple_repeat 1 22 0 209 233 0 0 chr6 24466590 24466633 -157948609 + A-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr6 24466795 24466819 -157948423 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chr6 24467436 24467477 -157947765 + AT_rich Low_complexity Low_complexity 1 41 0 2339 181 26 28 chr6 24468784 24469249 -157945993 - MLT1C LTR MaLR -3 464 1 2152 127 0 0 chr6 24470543 24470842 -157944400 - AluSx SINE Alu -13 299 1 1351 182 54 124 chr6 24471085 24471585 -157943657 + MLT1C LTR MaLR 3 467 0 2104 122 7 3 chr6 24471946 24472426 -157942816 - AluSg SINE Alu 0 310 3 1906 145 3 3 chr6 24472889 24473171 -157942071 + AluSx SINE Alu 1 282 -30 213 39 0 0 chr6 24473178 24473204 -157942038 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 7352 181 12 29 chr6 24473318 24474599 -157940643 - L1PA16 LINE L1 -26 6140 4839 1319 175 0 118 chr6 24474599 24474947 -157940295 + AluJb SINE Alu 1 307 -5 7352 181 12 29 chr6 24474947 24476325 -157938917 - L1PA16 LINE L1 -1327 4839 3529 1652 205 13 19 chr6 24476324 24476699 -157938543 - L1 LINE L1 -1822 4324 3952 * 276 103 52 0 chr6 24476699 24476757 -157938485 + (TA)n Simple_repeat Simple_repeat 1 61 0 3741 237 43 26 chr6 24476764 24477977 -157937265 - L1 LINE L1 -2653 3493 2260 193 250 21 0 chr6 24478208 24478256 -157936986 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr6 24478526 24478557 -157936685 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr6 24478607 24478628 -157936614 + AT_rich Low_complexity Low_complexity 1 21 0 307 290 93 0 chr6 24479252 24479359 -157935883 + MIR3 SINE MIR 87 203 -5 567 12 38 0 chr6 24479834 24479914 -157935328 + (TG)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr6 24480931 24480985 -157934257 + AT_rich Low_complexity Low_complexity 1 54 0 419 289 62 58 chr6 24483848 24484056 -157931186 - MIR SINE MIR -27 235 27 34 0 0 0 chr6 24484402 24484436 -157930806 + AT_rich Low_complexity Low_complexity 1 34 0 263 207 137 97 chr6 24484492 24484719 -157930523 + MLT1C LTR MaLR 1 236 -269 354 80 0 0 chr6 24484731 24484781 -157930461 + (GGGAA)n Simple_repeat Simple_repeat 5 54 0 1154 187 77 4 chr6 24484797 24485032 -157930210 + MLT1C LTR MaLR 206 457 -10 300 270 32 48 chr6 24486174 24486300 -157928942 + MER117 DNA MER1_type 2 125 -72 297 0 0 0 chr6 24487533 24487566 -157927676 + (CA)n Simple_repeat Simple_repeat 1 33 0 348 300 100 0 chr6 24488133 24488263 -157926979 + MIR SINE MIR 96 238 -24 261 240 40 0 chr6 24488293 24488368 -157926874 - MIR SINE MIR -111 151 74 204 130 43 22 chr6 24488938 24488984 -157926258 + (TA)n Simple_repeat Simple_repeat 1 47 0 2184 112 0 0 chr6 24489819 24490096 -157925146 + AluSg SINE Alu 1 277 -33 216 67 0 0 chr6 24491120 24491150 -157924092 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 340 116 50 chr6 24491702 24492061 -157923181 - L2 LINE L2 0 3313 2915 2561 58 0 0 chr6 24492061 24492369 -157922873 + AluY SINE Alu 4 311 0 307 340 116 50 chr6 24492369 24492473 -157922769 - L2 LINE L2 -398 2915 2819 235 333 33 11 chr6 24492527 24492617 -157922625 - L2 LINE L2 -594 2720 2629 15831 160 21 8 chr6 24492990 24494476 -157920766 - L1MA2 LINE L1 0 7723 6257 2691 16 7 3 chr6 24494476 24494784 -157920458 - AluY SINE Alu -2 309 1 15831 160 21 8 chr6 24494784 24495086 -157920156 - L1MA2 LINE L1 -1466 6257 5960 333 0 0 0 chr6 24495086 24495123 -157920119 + (TG)n Simple_repeat Simple_repeat 2 38 0 15831 160 21 8 chr6 24495123 24497560 -157917682 - L1MA2 LINE L1 -1763 5960 3241 1547 202 0 7 chr6 24497557 24497839 -157917403 + L1M1 LINE L1 441 720 -6845 * 14111 162 74 11 chr6 24497836 24500333 -157914909 - L1MA2 LINE L1 -4893 2672 18 226 291 23 58 chr6 24500337 24500423 -157914819 + MIR SINE MIR 79 161 -101 2073 115 30 0 chr6 24500672 24501026 -157914216 + AluSq SINE Alu 1 363 0 1722 192 6 12 chr6 24501088 24501426 -157913816 - MER58B DNA MER1_type -4 337 2 838 259 42 5 chr6 24502381 24502593 -157912649 + MER58A DNA MER1_type 5 224 0 221 128 21 0 chr6 24502838 24502885 -157912357 + (TG)n Simple_repeat Simple_repeat 2 49 0 1385 179 6 88 chr6 24503103 24503285 -157911957 - AluJo SINE Alu -19 293 147 2407 83 0 0 chr6 24503285 24503585 -157911657 + AluSg SINE Alu 1 300 -10 1385 179 6 88 chr6 24503585 24503721 -157911521 - AluJo SINE Alu -165 147 1 677 291 205 24 chr6 24505327 24505708 -157909534 + MLT1J2 LTR MaLR 1 450 0 180 125 0 0 chr6 24506754 24506786 -157908456 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 513 362 119 15 chr6 24507025 24507293 -157907949 + L2 LINE L2 2977 3272 0 201 236 0 18 chr6 24508027 24508082 -157907160 + (TG)n Simple_repeat Simple_repeat 1 54 0 237 132 0 0 chr6 24508123 24508161 -157907081 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr6 24509244 24509270 -157905972 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 201 128 51 0 chr6 24509474 24509513 -157905729 + T-rich Low_complexity Low_complexity 2 42 0 1428 226 68 19 chr6 24509879 24510246 -157904996 - ERVL-B1 LTR ERVL -5378 386 2 1525 212 166 22 chr6 24510249 24510296 -157904946 - MLT2B1 LTR ERVL 0 520 481 396 0 0 0 chr6 24510296 24510340 -157904902 + (TG)n Simple_repeat Simple_repeat 1 44 0 363 44 0 0 chr6 24510342 24510387 -157904855 + (GA)n Simple_repeat Simple_repeat 2 46 0 1525 212 166 22 chr6 24510387 24510789 -157904453 - MLT2B1 LTR ERVL -39 481 3 559 157 20 13 chr6 24511185 24511338 -157903904 + CT-rich Low_complexity Low_complexity 3 156 0 1123 258 46 13 chr6 24512997 24513299 -157901943 + L1PB4 LINE L1 1 312 -6537 4003 142 77 1 chr6 24513299 24513960 -157901282 + MER50 LTR ERV1 1 711 -23 356 368 0 0 chr6 24513978 24514103 -157901139 + L1PB4 LINE L1 326 450 -6399 3067 254 14 4 chr6 24514936 24515672 -157899570 + L1PB4 LINE L1 1039 1781 -5068 645 25 0 0 chr6 24515673 24515752 -157899490 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 5707 59 16 41 chr6 24515752 24516898 -157898344 + SVA Other Other 50 866 -520 6702 64 14 41 chr6 24516915 24517934 -157897308 + SVA Other Other 433 1386 0 11913 224 23 14 chr6 24517934 24521763 -157893479 + L1PB4 LINE L1 1773 5655 -1193 3981 145 1 18 chr6 24521763 24522441 -157892801 + L1PB4 LINE L1 6178 6847 -11 295 384 69 6 chr6 24522455 24522614 -157892628 - MIR3 SINE MIR -21 187 19 1409 239 37 17 chr6 24522855 24523210 -157892032 - MLT1A2 LTR MaLR -11 363 2 2105 129 119 35 chr6 24523374 24523717 -157891525 + MSTA LTR MaLR 1 383 -45 2236 102 3 0 chr6 24523717 24524011 -157891231 + AluSp SINE Alu 1 295 -18 2105 129 119 35 chr6 24524011 24524062 -157891180 + MSTA LTR MaLR 383 428 0 2395 81 0 0 chr6 24524134 24524429 -157890813 - AluY SINE Alu -16 295 1 1143 186 26 0 chr6 24524538 24524732 -157890510 + AluJb SINE Alu 84 282 -30 348 111 0 0 chr6 24524735 24524789 -157890453 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1684 150 3 41 chr6 24525022 24525316 -157889926 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr6 24526184 24526209 -157889033 + AT_rich Low_complexity Low_complexity 1 25 0 372 119 0 0 chr6 24526508 24526567 -157888675 + (CA)n Simple_repeat Simple_repeat 2 60 0 313 283 68 27 chr6 24526736 24527008 -157888234 - L1MC4a LINE L1 -142 5979 5694 1818 111 92 0 chr6 24527010 24527272 -157887970 + AluSq SINE Alu 12 297 -16 276 250 111 0 chr6 24527274 24527346 -157887896 - LTR50 LTR ERVL -475 320 241 738 258 30 5 chr6 24527610 24527808 -157887434 - MER58A DNA MER1_type -1 223 21 23 78 0 0 chr6 24528028 24528079 -157887163 + AT_rich Low_complexity Low_complexity 1 51 0 1843 120 25 0 chr6 24528091 24528365 -157886877 + MER83C LTR ERV1 1 281 -92 1202 111 24 53 chr6 24528371 24528520 -157886722 + MER83C LTR ERV1 173 316 -57 2112 117 30 7 chr6 24528520 24528819 -157886423 - AluSx SINE Alu -6 306 1 1202 111 24 53 chr6 24528819 24528876 -157886366 + MER83C LTR ERV1 316 373 0 22 0 0 0 chr6 24528950 24528972 -157886270 + AT_rich Low_complexity Low_complexity 1 22 0 457 319 87 77 chr6 24529123 24529271 -157885971 + HAL1b LINE L1 16 161 -1187 273 57 0 0 chr6 24529271 24529306 -157885936 + (TG)n Simple_repeat Simple_repeat 2 36 0 457 319 87 77 chr6 24529306 24529509 -157885733 + HAL1b LINE L1 161 361 -987 345 47 0 0 chr6 24529509 24529552 -157885690 + (CA)n Simple_repeat Simple_repeat 2 44 0 457 319 87 77 chr6 24529552 24529775 -157885467 + HAL1b LINE L1 361 600 -748 1906 218 58 83 chr6 24529775 24529823 -157885419 - MLT2B3 LTR ERVL 0 554 506 695 62 10 0 chr6 24529823 24529920 -157885322 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 1906 218 58 83 chr6 24529920 24530439 -157884803 - MLT2B3 LTR ERVL -48 506 1 457 319 87 77 chr6 24530439 24530486 -157884756 + HAL1b LINE L1 600 645 -703 499 280 67 40 chr6 24530539 24530910 -157884332 + L1MEc LINE L1 1428 1808 -4588 2426 154 5 29 chr6 24530927 24531348 -157883894 + Tigger2a DNA MER2_type 3 413 -21 30 0 0 0 chr6 24531698 24531728 -157883514 + AT_rich Low_complexity Low_complexity 1 30 0 286 274 57 28 chr6 24533019 24533125 -157882117 + MIR SINE MIR 83 191 -71 903 213 23 32 chr6 24533197 24533413 -157881829 - MIR SINE MIR -48 214 1 33 25 0 0 chr6 24533629 24533669 -157881573 + AT_rich Low_complexity Low_complexity 1 40 0 961 236 71 46 chr6 24533674 24534068 -157881174 - L1ME3A LINE L1 -8 6162 5759 433 250 188 18 chr6 24534076 24534352 -157880890 - L1ME3A LINE L1 -554 5608 5286 772 308 89 31 chr6 24534363 24535361 -157879881 - L1ME3A LINE L1 -913 5233 4178 296 378 85 35 chr6 24535467 24536070 -157879172 + L2 LINE L2 1783 2415 -899 27 29 0 0 chr6 24537941 24537975 -157877267 + AT_rich Low_complexity Low_complexity 1 34 0 256 323 55 31 chr6 24538205 24538332 -157876910 + L2 LINE L2 3143 3272 0 188 170 43 0 chr6 24538521 24538568 -157876674 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 2158 132 7 0 chr6 24538757 24539067 -157876175 - AluSq SINE Alu -1 312 1 189 225 0 0 chr6 24539522 24539562 -157875680 + MIR SINE MIR 73 112 -150 21 36 0 0 chr6 24540917 24540945 -157874297 + AT_rich Low_complexity Low_complexity 1 28 0 653 285 26 0 chr6 24541937 24542130 -157873112 + MIR SINE MIR 52 249 -13 361 367 40 46 chr6 24542535 24543058 -157872184 - L2 LINE L2 -337 2977 2458 591 312 68 23 chr6 24543063 24543284 -157871958 - MIR SINE MIR -15 247 17 614 275 93 25 chr6 24543402 24543638 -157871604 + MIR SINE MIR 1 252 -10 208 356 89 0 chr6 24543656 24543717 -157871525 - L2 LINE L2 -1009 2305 2251 1802 205 3 19 chr6 24543717 24544088 -157871154 - MLT1A1 LTR MaLR 0 365 1 208 356 89 0 chr6 24544088 24544127 -157871115 - L2 LINE L2 -1063 2251 2196 372 253 72 103 chr6 24544283 24544631 -157870611 + HAL1 LINE L1 1439 1775 -732 377 282 122 69 chr6 24544712 24544871 -157870371 + L1M4 LINE L1 3877 4026 -2120 847 211 0 24 chr6 24544871 24545037 -157870205 - FRAM SINE Alu -3 163 2 377 282 122 69 chr6 24545037 24545298 -157869944 + L1M4 LINE L1 4026 4320 -1826 285 265 76 60 chr6 24545463 24545565 -157869677 + L1MC4a LINE L1 2678 2777 -3369 1542 199 2 91 chr6 24545565 24545971 -157869271 - MLT1A2 LTR MaLR -4 370 1 285 265 76 60 chr6 24545971 24546355 -157868887 + L1MC4a LINE L1 2777 3172 -2974 2448 79 0 3 chr6 24546525 24546828 -157868414 + AluSg SINE Alu 3 304 -6 1971 125 7 0 chr6 24546968 24547279 -157867963 + AluSx SINE Alu 1 313 0 2411 93 0 0 chr6 24547725 24548035 -157867207 + AluSx SINE Alu 1 310 -2 658 126 10 0 chr6 24548197 24548300 -157866942 + AluSp/q SINE Alu 201 304 -9 417 291 97 33 chr6 24548355 24548685 -157866557 + L1MC4a LINE L1 4491 4841 -1305 333 273 22 71 chr6 24548804 24548987 -157866255 + L1MC4a LINE L1 4994 5167 -979 1404 260 117 47 chr6 24549104 24549823 -157865419 + L1MC4a LINE L1 5260 6028 -1780 4888 28 0 0 chr6 24549881 24550453 -157864789 + L1PA3 LINE L1 5584 6155 0 21 0 0 31 chr6 24550453 24550466 -157864776 + AT_rich Low_complexity Low_complexity 1 13 -18 2938 60 3 5 chr6 24550466 24550846 -157864396 + L1PA7 LINE L1 5769 6147 -7 21 0 0 31 chr6 24550846 24550864 -157864378 + AT_rich Low_complexity Low_complexity 13 31 0 3020 137 46 61 chr6 24551119 24551774 -157863468 - MER39B LTR ERV1 -4 649 5 1267 139 48 10 chr6 24551797 24552229 -157863013 - LTR54 LTR ERV1 0 510 1 261 0 0 0 chr6 24553150 24553179 -157862063 + (T)n Simple_repeat Simple_repeat 1 29 0 2116 79 58 7 chr6 24554275 24554567 -157860675 + AluY SINE Alu 3 309 -2 2439 119 23 3 chr6 24555520 24555872 -157859370 - THE1B LTR MaLR -5 359 1 3425 116 51 75 chr6 24556115 24556779 -157858463 + MER39B LTR ERV1 6 653 0 401 237 51 8 chr6 24556969 24557087 -157858155 - MER103 DNA DNA -43 123 1 2012 139 0 23 chr6 24557529 24557838 -157857404 + AluSx SINE Alu 1 302 -10 237 83 0 0 chr6 24558634 24558670 -157856572 + (TC)n Simple_repeat Simple_repeat 1 36 0 212 57 0 29 chr6 24558711 24558746 -157856496 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 387 358 40 0 chr6 24559531 24559707 -157855535 + MIR SINE MIR 12 194 -68 2457 51 3 3 chr6 24559866 24560161 -157855081 + AluY SINE Alu 1 295 -16 29 28 0 0 chr6 24560539 24560575 -157854667 + AT_rich Low_complexity Low_complexity 1 36 0 532 330 35 5 chr6 24561665 24561862 -157853380 + L2 LINE L2 1728 1930 -1384 2548 246 70 21 chr6 24561866 24562965 -157852277 + L1ME1 LINE L1 5013 6166 0 630 265 13 57 chr6 24563021 24563251 -157851991 + L2 LINE L2 1918 2137 -1177 267 308 26 0 chr6 24563247 24563325 -157851917 - L2 LINE L2 -240 3073 2994 * 825 194 22 39 chr6 24563340 24563520 -157851722 - MER45A DNA AcHobo -1 177 1 895 317 54 38 chr6 24563523 24564248 -157850994 + L2 LINE L2 2550 3290 -23 216 0 0 0 chr6 24564248 24564272 -157850970 + (CA)n Simple_repeat Simple_repeat 2 25 0 354 139 12 93 chr6 24564373 24564459 -157850783 + MER116 DNA Mariner 2 80 0 216 0 0 0 chr6 24565854 24565878 -157849364 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr6 24565877 24565911 -157849331 + (TG)n Simple_repeat Simple_repeat 2 35 0 2509 52 0 19 chr6 24566132 24566441 -157848801 - AluY SINE Alu -8 303 1 391 302 16 31 chr6 24566784 24566913 -157848329 + MER5B DNA MER1_type 1 127 -51 596 240 53 7 chr6 24566930 24567080 -157848162 - L1ME3A LINE L1 -9 6161 6005 228 303 0 15 chr6 24567086 24567152 -157848090 + MER5B DNA MER1_type 114 178 0 323 369 38 0 chr6 24567245 24567402 -157847840 - MIR SINE MIR -54 208 46 461 266 190 11 chr6 24567403 24567587 -157847655 + MIR SINE MIR 8 224 -38 186 103 0 0 chr6 24568055 24568084 -157847158 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 190 267 229 19 chr6 24568629 24568734 -157846508 + MIR SINE MIR 17 143 -65 25 31 0 0 chr6 24569120 24569152 -157846090 + AT_rich Low_complexity Low_complexity 1 32 0 862 208 89 10 chr6 24569762 24569964 -157845278 - MER20 DNA MER1_type 0 219 2 385 267 29 0 chr6 24570036 24570141 -157845101 - MER103 DNA DNA -46 120 13 2125 116 3 0 chr6 24570302 24570595 -157844647 - AluSq SINE Alu -17 296 3 297 302 120 71 chr6 24570993 24571427 -157843815 + MLT1K LTR MaLR 134 588 0 2411 55 0 23 chr6 24573159 24573467 -157841775 + AluY SINE Alu 9 309 -2 577 296 71 15 chr6 24573493 24573689 -157841553 + MIR SINE MIR 32 238 -24 2220 113 0 3 chr6 24574807 24575117 -157840125 - AluSq SINE Alu -2 311 3 394 247 10 10 chr6 24575222 24575319 -157839923 - MER63 DNA MER1_type -288 772 676 1943 168 32 121 chr6 24577671 24578224 -157837018 + MLT1D LTR MaLR 2 505 0 272 155 0 17 chr6 24578269 24578327 -157836915 + (TA)n Simple_repeat Simple_repeat 1 57 0 2098 101 0 11 chr6 24578877 24579195 -157836047 - AluSx SINE Alu 0 315 1 190 0 67 0 chr6 24580239 24580269 -157834973 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1142 213 101 19 chr6 24580294 24580552 -157834690 + AluJo SINE Alu 1 279 -33 371 111 0 0 chr6 24580552 24580606 -157834636 + Alu SINE Alu 246 299 -3 2188 109 0 7 chr6 24582691 24582993 -157832249 - AluSq SINE Alu -13 300 1 2397 82 3 0 chr6 24583257 24583560 -157831682 - AluY SINE Alu -7 304 1 582 87 47 13 chr6 24586371 24586520 -157828722 + (CA)n Simple_repeat Simple_repeat 2 155 0 216 0 0 0 chr6 24586717 24586741 -157828501 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 221 296 185 37 chr6 24586761 24586896 -157828346 + MER5A DNA MER1_type 3 157 -32 * 471 270 169 7 chr6 24586780 24586928 -157828314 - MER5A DNA MER1_type -6 183 12 196 274 55 0 chr6 24587557 24587630 -157827612 + L2 LINE L2 561 637 -2677 526 345 101 27 chr6 24587859 24588422 -157826820 + L2 LINE L2 1465 2069 -1245 1919 166 7 0 chr6 24588745 24589047 -157826195 - AluJb SINE Alu -8 304 1 191 343 78 60 chr6 24589758 24589877 -157825365 + L2 LINE L2 3104 3228 -44 1691 177 34 95 chr6 24589877 24589992 -157825250 + MLT1C LTR MaLR 2 122 -345 2366 67 0 0 chr6 24589992 24590304 -157824938 + AluY SINE Alu 1 312 0 1691 177 34 95 chr6 24590304 24590683 -157824559 + MLT1C LTR MaLR 122 467 0 191 343 78 60 chr6 24590683 24590729 -157824513 + L2 LINE L2 3228 3272 0 301 231 97 75 chr6 24590812 24590946 -157824296 + MIR SINE MIR 126 262 0 309 279 19 39 chr6 24593114 24593218 -157822024 - MER20B DNA MER1_type -619 164 63 250 192 14 14 chr6 24594352 24594425 -157820817 + GA-rich Low_complexity Low_complexity 2 74 0 362 208 19 38 chr6 24595263 24595369 -157819873 + L1MC5 LINE L1 7810 7913 -48 2593 19 0 0 chr6 24595371 24595689 -157819553 - L1PA3 LINE L1 -754 5392 5075 6331 35 0 0 chr6 24595689 24596431 -157818811 + L1PA3 LINE L1 5405 6155 0 2283 213 33 59 chr6 24596599 24597227 -157818015 - LTR9 LTR ERV1 0 612 1 281 340 81 32 chr6 24597737 24597922 -157817320 + MIR SINE MIR 12 205 -57 301 292 57 57 chr6 24598086 24598295 -157816947 + L2 LINE L2 2071 2279 -1035 307 286 61 27 chr6 24648544 24648691 -157766551 - MIR SINE MIR -2 260 109 26 0 0 0 chr6 24651977 24652003 -157763239 + AT_rich Low_complexity Low_complexity 1 26 0 226 322 102 17 chr6 24652003 24652121 -157763121 - L2 LINE L2 0 3313 3186 202 196 43 0 chr6 24652995 24653041 -157762201 + MER91C DNA MER1_type 37 84 -56 639 98 0 0 chr6 24653054 24653146 -157762096 + (TA)n Simple_repeat Simple_repeat 1 92 0 1798 135 193 14 chr6 24653889 24654237 -157761005 - MSTA LTR MaLR -18 410 1 1086 213 57 92 chr6 24654348 24654752 -157760490 + MLT1B LTR MaLR 1 390 0 208 139 0 0 chr6 24655676 24655712 -157759530 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 971 194 16 0 chr6 24656360 24656546 -157758696 + MER5A DNA MER1_type 1 189 0 1049 276 103 61 chr6 24657317 24657879 -157757363 + MLT2F LTR ERVL 21 612 -51 1514 149 35 116 chr6 24657879 24658276 -157756966 - MLT1A1 LTR MaLR 0 365 1 1049 276 103 61 chr6 24658276 24658322 -157756920 + MLT2F LTR ERVL 612 655 -8 281 234 26 26 chr6 24658329 24658406 -157756836 + HERVL-F LTR ERVL 4 80 -5574 367 331 40 40 chr6 24658576 24658878 -157756364 - MLT1I LTR MaLR -45 364 63 351 310 38 70 chr6 24659153 24659440 -157755802 + HAL1b LINE L1 273 550 -798 2041 105 36 10 chr6 24660335 24660640 -157754602 + AluSp SINE Alu 1 313 0 347 306 81 16 chr6 24661064 24661541 -157753701 + L1MC/D LINE L1 3589 4097 -2049 15126 141 35 29 chr6 24661898 24663487 -157751755 + Tigger4(Zombi) DNA MER2_type 1 1616 -1115 1752 154 0 4 chr6 24663487 24663759 -157751483 - AluSx SINE Alu -13 299 29 15126 141 35 29 chr6 24663759 24664881 -157750361 + Tigger4(Zombi) DNA MER2_type 1616 2729 -2 23 68 0 0 chr6 24664928 24664972 -157750270 + AT_rich Low_complexity Low_complexity 1 44 0 377 309 80 56 chr6 24665019 24665331 -157749911 + L1MC/D LINE L1 4696 5020 -1126 23 0 0 0 chr6 24665472 24665495 -157749747 + AT_rich Low_complexity Low_complexity 1 23 0 483 339 76 31 chr6 24665571 24666043 -157749199 + L1MC/D LINE L1 5261 5760 -674 300 280 104 80 chr6 24666116 24666502 -157748740 + L1M4 LINE L1 2656 3050 -3096 1145 258 75 73 chr6 24666502 24667129 -157748113 - HAL1b LINE L1 -500 848 221 236 346 108 14 chr6 24667423 24667637 -157747605 - L2 LINE L2 -599 2715 2482 25 31 0 0 chr6 24667654 24667686 -157747556 + AT_rich Low_complexity Low_complexity 1 32 0 2428 56 0 7 chr6 24667688 24667991 -157747251 - AluY SINE Alu -10 301 1 619 294 97 27 chr6 24668164 24669236 -157746006 + L1M4 LINE L1 3564 4715 -1431 * 13602 158 13 16 chr6 24669230 24670435 -157744807 + L1P3 LINE L1 4 1210 -5251 189 0 0 0 chr6 24670435 24670456 -157744786 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13602 158 13 16 chr6 24670456 24672928 -157742314 + L1P3 LINE L1 1210 3733 -2728 3205 127 21 6 chr6 24672957 24673471 -157741771 - L1P LINE L1 -2055 4091 3570 2242 96 6 0 chr6 24673472 24673785 -157741457 + L1PA8A LINE L1 5803 6117 -14 207 0 0 0 chr6 24673785 24673808 -157741434 + (CA)n Simple_repeat Simple_repeat 2 24 0 426 352 54 39 chr6 24673810 24674216 -157741026 + L1M4 LINE L1 4711 5122 -1024 256 294 0 16 chr6 24674319 24674380 -157740862 + L1M LINE L1 5257 5317 -845 1924 150 0 13 chr6 24674380 24674680 -157740562 + AluSx SINE Alu 1 296 -16 256 294 0 16 chr6 24674680 24674744 -157740498 + L1M LINE L1 5317 5380 -782 * 2838 240 62 42 chr6 24674737 24675923 -157739319 - L1MDa LINE L1 -2336 4204 2996 596 162 0 48 chr6 24675959 24676064 -157739178 - FLAM_A SINE Alu -42 100 1 1018 221 48 43 chr6 24676149 24676716 -157738526 - L1MDa LINE L1 -3658 2882 2316 * 22964 144 37 21 chr6 24676715 24677379 -157737863 - L1PA7 LINE L1 -5 6409 5757 2177 86 40 7 chr6 24677379 24677680 -157737562 - AluY SINE Alu 0 311 1 22964 144 37 21 chr6 24677680 24683347 -157731895 - L1PA7 LINE L1 -657 5757 2 27 29 0 0 chr6 24683399 24683433 -157731809 + AT_rich Low_complexity Low_complexity 1 34 0 642 174 96 0 chr6 24683488 24683603 -157731639 + FLAM_C SINE Alu 2 127 -16 293 357 94 13 chr6 24683899 24684123 -157731119 - MIR SINE MIR -14 248 7 29 47 0 0 chr6 24684238 24684281 -157730961 + AT_rich Low_complexity Low_complexity 1 43 0 1562 180 9 43 chr6 24684281 24684631 -157730611 - L1MA6 LINE L1 0 6300 5963 216 135 0 0 chr6 24685962 24685999 -157729243 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 222 196 0 54 chr6 24686443 24686499 -157728743 - L2 LINE L2 -5 3267 3215 32 57 0 0 chr6 24686759 24686812 -157728430 + AT_rich Low_complexity Low_complexity 1 53 0 2574 254 62 17 chr6 24688792 24689603 -157725639 - L1ME1 LINE L1 -5 6161 5315 3100 132 24 21 chr6 24689607 24690815 -157724427 + L1PA14 LINE L1 4775 6158 -3 749 199 27 63 chr6 24690869 24691090 -157724152 - L1ME1 LINE L1 -873 5273 5061 442 247 25 57 chr6 24691582 24691740 -157723502 + MER5A DNA MER1_type 7 159 -30 27 49 0 0 chr6 24692199 24692240 -157723002 + AT_rich Low_complexity Low_complexity 1 41 0 305 278 56 106 chr6 24693675 24693873 -157721369 - MER5A DNA MER1_type -1 188 1 202 290 16 0 chr6 24695681 24695743 -157719499 + CT-rich Low_complexity Low_complexity 1 63 0 181 116 23 23 chr6 24696804 24696847 -157718395 + (TA)n Simple_repeat Simple_repeat 2 44 0 2001 107 24 86 chr6 24697259 24697642 -157717600 - THE1C LTR MaLR -2 373 15 235 264 0 19 chr6 24697659 24697712 -157717530 - L2 LINE L2 -68 3204 3153 1561 96 45 0 chr6 24697813 24698033 -157717209 - MER30 DNA MER1_type 0 230 1 186 43 0 0 chr6 24698128 24698151 -157717091 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1074 254 183 9 chr6 24698732 24699154 -157716088 + MLT2B2 LTR ERVL 1 495 -20 472 298 79 65 chr6 24699360 24699713 -157715529 + MER20B DNA MER1_type 4 361 -422 421 85 0 0 chr6 24699722 24699781 -157715461 + MADE1 DNA Mariner 22 80 0 994 273 75 13 chr6 24699788 24700176 -157715066 + MER20B DNA MER1_type 371 782 -1 407 303 146 43 chr6 24700197 24700547 -157714695 - L2 LINE L2 -743 2571 2186 201 379 45 15 chr6 24700606 24700738 -157714504 - MIR SINE MIR -72 190 55 1820 222 60 25 chr6 24700863 24701216 -157714026 + LTR40b LTR ERVL 1 375 -87 2930 93 25 16 chr6 24701216 24701656 -157713586 + MLT2A1 LTR ERVL 1 444 0 1820 222 60 25 chr6 24701656 24701748 -157713494 + LTR40b LTR ERVL 375 462 0 656 307 39 79 chr6 24701762 24702250 -157712992 - L2 LINE L2 -147 3166 2619 297 75 0 0 chr6 24702333 24702373 -157712869 + (TTA)n Simple_repeat Simple_repeat 1 40 0 264 365 22 17 chr6 24704369 24704547 -157710695 - L2 LINE L2 -1903 1411 1233 275 311 38 30 chr6 24704590 24704722 -157710520 + MARNA DNA Mariner 415 547 -39 418 209 304 20 chr6 24704750 24704951 -157710291 + L1MD2 LINE L1 6088 6345 -14 25 65 0 0 chr6 24705838 24705884 -157709358 + AT_rich Low_complexity Low_complexity 1 46 0 1554 258 185 19 chr6 24706219 24706972 -157708270 + L2 LINE L2 2194 3069 -244 1198 270 69 26 chr6 24707079 24707583 -157707659 + L1ME2 LINE L1 5578 6103 -61 22 35 0 0 chr6 24707773 24707802 -157707440 + AT_rich Low_complexity Low_complexity 1 29 0 371 308 50 66 chr6 24707806 24708124 -157707118 + L1ME LINE L1 2851 3163 -2983 2829 6 0 0 chr6 24708657 24708968 -157706274 - AluYb8 SINE Alu -7 311 1 378 318 67 30 chr6 24708968 24709267 -157705975 + L1ME LINE L1 3863 4172 -1974 245 309 37 6 chr6 24709304 24709466 -157705776 + L1ME LINE L1 4242 4408 -1738 22 0 0 0 chr6 24709669 24709691 -157705551 + AT_rich Low_complexity Low_complexity 1 22 0 338 294 154 33 chr6 24709780 24710079 -157705163 + L1ME LINE L1 5411 5745 -417 3696 194 6 30 chr6 24710746 24711486 -157703756 + L1MB8 LINE L1 5388 6109 -69 2266 105 0 0 chr6 24711486 24711780 -157703462 - AluSx SINE Alu -18 294 1 3696 194 6 30 chr6 24711780 24711843 -157703399 + L1MB8 LINE L1 6109 6172 -6 2139 85 0 14 chr6 24712472 24712754 -157702488 + AluY SINE Alu 23 300 -11 1424 176 62 38 chr6 24713371 24713661 -157701581 - AluJo SINE Alu -15 297 1 1325 90 6 0 chr6 24713731 24713908 -157701334 - AluY SINE Alu -1 310 133 2345 96 0 3 chr6 24713908 24714220 -157701022 - AluY SINE Alu 0 311 1 1758 299 136 23 chr6 24714246 24715390 -157699852 - L2 LINE L2 0 3313 2032 296 229 16 10 chr6 24715628 24715829 -157699413 + (TA)n Simple_repeat Simple_repeat 1 202 0 2243 91 3 0 chr6 24715845 24716130 -157699112 - AluSp SINE Alu -26 287 2 236 186 70 0 chr6 24716951 24717037 -157698205 + (TA)n Simple_repeat Simple_repeat 1 92 0 22 109 0 0 chr6 24717062 24717154 -157698088 + AT_rich Low_complexity Low_complexity 1 92 0 336 199 28 50 chr6 24717175 24717356 -157697886 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 2738 78 93 5 chr6 24718217 24718627 -157696615 + LTR7 LTR ERV1 3 448 -2 243 0 0 0 chr6 24718726 24718753 -157696489 + (A)n Simple_repeat Simple_repeat 1 27 0 2525 84 0 0 chr6 24719253 24719563 -157695679 - AluSg SINE Alu 0 310 1 1794 208 20 20 chr6 24719747 24720155 -157695087 + L1MB4 LINE L1 5631 6038 -142 600 202 69 12 chr6 24720782 24720955 -157694287 - MER5A DNA MER1_type -6 183 1 618 127 18 9 chr6 24721271 24721381 -157693861 + L1MB4 LINE L1 6021 6131 -49 2146 108 7 0 chr6 24722299 24722586 -157692656 + AluSq SINE Alu 1 289 -24 203 0 0 36 chr6 24722590 24722618 -157692624 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2173 113 3 13 chr6 24723081 24723392 -157691850 - AluSp SINE Alu -5 308 1 204 97 0 0 chr6 24723908 24723939 -157691303 + (TG)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr6 24724541 24724565 -157690677 + (TATG)n Simple_repeat Simple_repeat 2 25 0 272 331 15 46 chr6 24724567 24724697 -157690545 - L2 LINE L2 -4 3309 3184 1437 249 82 15 chr6 24724727 24725266 -157689976 - MLT2F LTR ERVL -14 649 35 570 214 174 0 chr6 24725304 24725482 -157689760 + L1ME3A LINE L1 5956 6164 -6 290 344 94 56 chr6 24725708 24726004 -157689238 - L2 LINE L2 -429 2885 2578 548 267 68 0 chr6 24726004 24726165 -157689077 + MIR SINE MIR 1 172 -90 431 280 98 53 chr6 24726604 24726829 -157688413 + L1MC4a LINE L1 5814 6048 -1760 516 366 48 5 chr6 24727284 24727658 -157687584 + L1MC4a LINE L1 6414 6803 -1005 352 144 122 22 chr6 24727669 24727759 -157687483 + L1ME2 LINE L1 5631 5729 -435 404 242 109 8 chr6 24727807 24727935 -157687307 - L1ME2 LINE L1 -274 5890 5750 732 264 43 4 chr6 24727984 24728215 -157687027 + L1ME2 LINE L1 5912 6151 -13 776 225 38 19 chr6 24728219 24728428 -157686814 + L1MC4a LINE L1 6345 6557 -1251 627 312 78 12 chr6 24728602 24729151 -157686091 + MLT2F LTR ERVL 30 661 -2 279 310 39 32 chr6 24729152 24729307 -157685935 + HERVL-F LTR ERVL 4 159 -5495 1620 173 15 7 chr6 24729324 24729627 -157685615 - AluJo SINE Alu 0 313 9 426 344 70 36 chr6 24729698 24730056 -157685186 + HERVL-F LTR ERVL 282 651 -5113 1354 330 19 29 chr6 24730077 24730723 -157684519 + HERVL-F LTR ERVL 778 1416 -4348 2958 260 44 17 chr6 24730731 24730839 -157684403 + HERVL-F LTR ERVL 1624 1728 -4036 2164 176 102 11 chr6 24730839 24731300 -157683942 + MLT1D LTR MaLR 3 505 0 2958 260 44 17 chr6 24731300 24732123 -157683119 + HERVL-F LTR ERVL 1728 2622 -3142 800 323 170 16 chr6 24732126 24732684 -157682558 + MLT2F LTR ERVL 14 657 -6 414 0 0 0 chr6 24732685 24732731 -157682511 + (TG)n Simple_repeat Simple_repeat 1 46 0 3413 231 117 12 chr6 24732732 24733934 -157681308 + L1MC4 LINE L1 6618 8036 -6 1253 274 154 20 chr6 24733962 24734463 -157680779 - MLT1G1 LTR MaLR -27 568 1 942 90 0 0 chr6 24734493 24734627 -157680615 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 337 315 45 48 chr6 24734887 24735265 -157679977 + L1MC4 LINE L1 7098 7474 -568 510 92 0 13 chr6 24736044 24736056 -157679186 + LTR3b LTR ERVK 426 437 -63 2006 153 36 59 chr6 24736056 24736220 -157679022 + LTR3 LTR ERVK 1 167 -262 2215 113 3 0 chr6 24736220 24736521 -157678721 - AluSp SINE Alu -11 302 1 2006 153 36 59 chr6 24736521 24736795 -157678447 + LTR3 LTR ERVK 167 429 0 510 92 0 13 chr6 24736795 24736858 -157678384 + LTR3b LTR ERVK 437 500 0 303 300 0 0 chr6 24736858 24736938 -157678304 - L2 LINE L2 -948 2366 2287 246 62 0 0 chr6 24736938 24736970 -157678272 + (TAA)n Simple_repeat Simple_repeat 3 34 0 325 280 189 29 chr6 24737514 24737689 -157677553 - MIR SINE MIR -13 249 47 201 163 0 0 chr6 24738614 24738663 -157676579 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 33 33 0 chr6 24740627 24740657 -157674585 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr6 24741413 24741435 -157673807 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr6 24741669 24741692 -157673550 + (TG)n Simple_repeat Simple_repeat 2 24 0 252 208 0 39 chr6 24741797 24741874 -157673368 - L1M LINE L1 -745 5429 5356 266 241 52 0 chr6 24741909 24741967 -157673275 - L2 LINE L2 -68 3245 3185 21 57 0 0 chr6 24742001 24742036 -157673206 + AT_rich Low_complexity Low_complexity 1 35 0 2867 9 0 6 chr6 24742170 24742490 -157672752 - AluYb8 SINE Alu 0 318 1 2124 196 70 29 chr6 24745782 24746328 -157668914 + L1MC3 LINE L1 6672 7239 -546 635 192 20 0 chr6 24746331 24746477 -157668765 - L1MC3 LINE L1 -188 7597 7449 2689 107 0 3 chr6 24747109 24747474 -157667768 + THE1B LTR MaLR 1 364 0 22 80 0 0 chr6 24747478 24747528 -157667714 + AT_rich Low_complexity Low_complexity 1 50 0 43264 42 4 8 chr6 24747583 24749445 -157665797 + L1PA4 LINE L1 4 1872 -4283 3304 71 5 12 chr6 24749445 24749869 -157665373 - SVA Other Other -1 1385 965 43264 42 4 8 chr6 24749869 24754180 -157661062 + L1PA4 LINE L1 1872 6150 -5 429 119 0 0 chr6 24754180 24754247 -157660995 + AluS SINE Alu 230 296 -13 509 282 26 6 chr6 24855324 24855480 -157559762 - MIR SINE MIR -102 160 2 1687 221 91 31 chr6 24856568 24857051 -157558191 - MER21B LTR ERV1 -31 832 321 288 296 62 0 chr6 24857157 24857238 -157558004 + L1M4 LINE L1 2677 2762 -3384 224 286 11 0 chr6 24857256 24857347 -157557895 + (TA)n Simple_repeat Simple_repeat 2 93 0 337 277 75 21 chr6 24857373 24857561 -157557681 + L2 LINE L2 3116 3313 0 2039 126 43 98 chr6 24857797 24858194 -157557048 - THE1C LTR MaLR 0 375 1 216 156 44 0 chr6 24859540 24859585 -157555657 + T-rich Low_complexity Low_complexity 3 49 0 6314 77 3 73 chr6 24860153 24861041 -157554201 + LTR12 LTR ERV1 1 826 0 2282 103 0 0 chr6 24861613 24861904 -157553338 - AluY SINE Alu -20 291 1 229 229 69 84 chr6 24862007 24862138 -157553104 - MIR SINE MIR -10 252 124 23 0 0 0 chr6 24864561 24864584 -157550658 + AT_rich Low_complexity Low_complexity 1 23 0 2868 10 0 0 chr6 24864886 24865197 -157550045 - AluY SINE Alu 0 311 1 3275 136 6 11 chr6 24865224 24865752 -157549490 + MER61E LTR ERV1 1 525 -44 204 284 45 15 chr6 24865957 24866024 -157549218 - MIR3 SINE MIR -43 165 97 260 283 85 69 chr6 24866332 24866579 -157548663 + L3b LINE CR1 1129 1379 -204 1491 206 75 51 chr6 24867437 24867928 -157547314 - MLT1D LTR MaLR -2 503 1 183 156 0 0 chr6 24867964 24867996 -157547246 + (CA)n Simple_repeat Simple_repeat 1 32 0 210 143 0 0 chr6 24870890 24870925 -157544317 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr6 24871021 24871049 -157544193 + AT_rich Low_complexity Low_complexity 1 28 0 288 239 125 0 chr6 24871077 24871165 -157544077 - MIR SINE MIR -111 151 53 839 136 14 0 chr6 24872739 24872886 -157542356 + L1MA2 LINE L1 6128 6276 -28 21 0 0 0 chr6 24872928 24872949 -157542293 + AT_rich Low_complexity Low_complexity 1 21 0 1840 291 55 45 chr6 24874380 24875241 -157540001 - L2 LINE L2 -2439 875 7 191 103 26 0 chr6 24876554 24876593 -157538649 + A-rich Low_complexity Low_complexity 2 41 0 207 100 0 0 chr6 24876917 24876947 -157538295 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 447 298 13 32 chr6 24876947 24877094 -157538148 - L2 LINE L2 -13 3300 3155 369 312 123 78 chr6 24877217 24877337 -157537905 - L2 LINE L2 -351 2963 2850 982 184 47 119 chr6 24877337 24877740 -157537502 + MLT1A2 LTR MaLR 1 374 0 369 312 123 78 chr6 24877740 24878429 -157536813 - L2 LINE L2 -464 2850 2117 345 47 0 0 chr6 24878491 24878534 -157536708 + (CA)n Simple_repeat Simple_repeat 1 43 0 205 312 54 107 chr6 24879204 24879521 -157535721 + L2 LINE L2 2920 3219 -53 2347 101 23 49 chr6 24879559 24879944 -157535298 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr6 24880096 24880118 -157535124 + AT_rich Low_complexity Low_complexity 1 22 0 376 305 88 62 chr6 24880132 24880486 -157534756 - L2 LINE L2 -1 3312 2950 293 320 63 93 chr6 24880681 24881109 -157534133 - L2 LINE L2 -38 3234 2820 522 321 50 23 chr6 24882657 24882878 -157532364 + MIR SINE MIR 33 259 -3 846 153 0 0 chr6 24884046 24884177 -157531065 - FLAM_A SINE Alu -2 131 1 180 0 0 0 chr6 24885978 24885998 -157529244 + (A)n Simple_repeat Simple_repeat 1 20 0 250 314 14 0 chr6 24885999 24886069 -157529173 - L2 LINE L2 -9 3304 3234 205 246 261 0 chr6 24886106 24886175 -157529067 - L2 LINE L2 -39 3274 3188 2263 91 0 58 chr6 24887066 24887396 -157527846 + AluY SINE Alu 1 311 0 555 307 83 32 chr6 24887654 24887872 -157527370 + MIR SINE MIR 8 236 -26 3003 114 14 0 chr6 24887891 24888337 -157526905 + L1PA15 LINE L1 5708 6159 -6 890 146 8 0 chr6 24888593 24888723 -157526519 - FLAM_C SINE Alu -12 131 1 796 219 61 35 chr6 24889779 24890007 -157525235 + MLT1F1 LTR MaLR 1 234 -333 1447 260 81 35 chr6 24890167 24890733 -157524509 + MLT1E LTR MaLR 1 592 -1 794 196 6 37 chr6 24890736 24890899 -157524343 + MLT1F1 LTR MaLR 307 464 -103 1321 243 31 52 chr6 24890923 24891405 -157523837 + MER74B LTR ERVL 81 552 -70 1631 90 5 31 chr6 24891446 24891669 -157523573 + AluY SINE Alu 82 298 -13 449 196 18 27 chr6 24891691 24891803 -157523439 + MLT1F1 LTR MaLR 457 567 0 355 336 0 15 chr6 24891886 24892020 -157523222 + MIR SINE MIR 20 151 -111 22 35 0 0 chr6 24892818 24892847 -157522395 + AT_rich Low_complexity Low_complexity 1 29 0 2064 263 80 5 chr6 24892922 24893745 -157521497 - L1M4 LINE L1 -1010 5136 4252 2367 102 30 19 chr6 24895134 24895505 -157519737 - THE1C LTR MaLR 0 375 1 256 327 129 0 chr6 24898294 24898395 -157516847 + MIR SINE MIR 51 164 -98 1205 278 50 45 chr6 24898461 24899121 -157516121 + L2 LINE L2 2657 3311 -2 1696 165 49 19 chr6 24900145 24900778 -157514464 - MER44D DNA MER2_type -2 603 1 196 324 124 29 chr6 24900904 24901009 -157514233 - L2 LINE L2 -22 3250 3136 2474 85 0 0 chr6 24901098 24901404 -157513838 + AluSc SINE Alu 1 306 -3 387 300 131 8 chr6 24902009 24902139 -157513103 + L2 LINE L2 3168 3313 0 266 333 19 19 chr6 24902667 24902772 -157512470 + L2 LINE L2 3168 3272 0 1876 206 31 53 chr6 24903882 24904393 -157510849 - MLT1F LTR MaLR 0 542 43 729 213 49 0 chr6 24904507 24904671 -157510571 + MLT2B1 LTR ERVL 1 172 -348 22 0 0 0 chr6 24906044 24906066 -157509176 + AT_rich Low_complexity Low_complexity 1 22 0 1720 147 23 0 chr6 24906159 24906418 -157508824 + AluSx SINE Alu 12 276 -36 182 219 0 0 chr6 24906778 24906819 -157508423 - MIR SINE MIR -110 152 112 1985 201 158 58 chr6 24907220 24907965 -157507277 + LTR1B LTR ERV1 1 820 -6 251 346 78 20 chr6 24908820 24908973 -157506269 + L2 LINE L2 3101 3262 -10 212 100 25 0 chr6 24911432 24911472 -157503770 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 299 315 27 36 chr6 24911668 24911779 -157503463 - L2 LINE L2 -18 3254 3145 321 380 76 9 chr6 24911833 24912057 -157503185 - L2 LINE L2 -339 2975 2737 2385 83 0 7 chr6 24912503 24912803 -157502439 + AluSc SINE Alu 1 298 -11 303 326 46 29 chr6 24913914 24914089 -157501153 + L3 LINE CR1 1195 1372 -205 2992 174 20 43 chr6 24916964 24917162 -157498080 - L1 LINE L1 -1346 4800 4599 2535 64 0 3 chr6 24917162 24917474 -157497768 - AluY SINE Alu 0 311 1 2992 174 20 43 chr6 24917474 24917974 -157497268 - L1 LINE L1 -1547 4599 4118 201 333 0 0 chr6 24918462 24918522 -157496720 - L2 LINE L2 -4 3309 3250 221 220 20 0 chr6 24918686 24918736 -157496506 + (TA)n Simple_repeat Simple_repeat 1 51 0 872 71 31 8 chr6 24919936 24920063 -157495179 - L1PA7 LINE L1 -2 6152 6023 1794 146 21 41 chr6 24920530 24920879 -157494363 + MLT1B LTR MaLR 1 344 -52 275 105 0 35 chr6 24920883 24920940 -157494302 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 349 75 88 19 chr6 24920948 24921108 -157494134 + (TA)n Simple_repeat Simple_repeat 2 172 0 298 36 72 66 chr6 24921121 24921288 -157493954 + (TA)n Simple_repeat Simple_repeat 2 169 0 389 109 44 77 chr6 24921289 24921545 -157493697 + (CTATA)n Simple_repeat Simple_repeat 1 247 0 43373 44 4 0 chr6 24923728 24929857 -157485385 - L1PA4 LINE L1 -6 6149 3 21 0 0 0 chr6 24929873 24929894 -157485348 + AT_rich Low_complexity Low_complexity 1 21 0 451 253 172 0 chr6 24930377 24930551 -157484691 - MLT1J1 LTR MaLR -234 212 9 293 68 23 0 chr6 24930686 24930730 -157484512 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 201 315 14 0 chr6 24930863 24930936 -157484306 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 1238 131 10 0 chr6 24930973 24931171 -157484071 + MER2 DNA MER2_type 1 200 -145 247 225 0 99 chr6 24931214 24931285 -157483957 + MER2 DNA MER2_type 278 341 -4 2047 300 40 36 chr6 24931357 24932485 -157482757 + L2 LINE L2 2175 3309 -4 207 194 0 0 chr6 24934174 24934210 -157481032 + MIR SINE MIR 156 191 -71 1955 125 21 0 chr6 24934273 24934552 -157480690 + AluSx SINE Alu 1 285 -27 355 353 15 8 chr6 24934686 24934819 -157480423 - L3 LINE CR1 -54 1523 1390 462 314 71 16 chr6 24934879 24935131 -157480111 + L2 LINE L2 1839 2104 -1210 27 49 0 0 chr6 24935305 24935346 -157479896 + AT_rich Low_complexity Low_complexity 1 41 0 378 310 39 47 chr6 24936846 24937101 -157478141 - L1MC4 LINE L1 -1 8041 7789 2265 103 0 38 chr6 24937164 24937484 -157477758 - AluSg SINE Alu -2 308 1 24 0 0 0 chr6 24937492 24937516 -157477726 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 82 55 chr6 24937520 24937850 -157477392 - L1MC4 LINE L1 -491 7551 7213 1424 157 49 66 chr6 24937884 24938170 -157477072 + AluJo SINE Alu 2 282 -30 354 98 0 0 chr6 24938177 24938228 -157477014 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 25 31 0 0 chr6 24938258 24938290 -157476952 + AT_rich Low_complexity Low_complexity 1 32 0 1987 152 3 0 chr6 24939629 24939926 -157475316 + AluSx SINE Alu 1 298 -14 5678 129 22 8 chr6 24939945 24941813 -157473429 - L1PA16 LINE L1 -9 6157 4270 1082 258 119 76 chr6 24944710 24945275 -157469967 - MLT1G1 LTR MaLR -2 593 5 218 203 14 95 chr6 24945279 24945353 -157469889 - MIR SINE MIR -130 132 65 3222 82 30 7 chr6 24945422 24945862 -157469380 + MLT2A2 LTR ERVL 2 451 -2 1785 234 98 57 chr6 24946952 24947731 -157467511 - L1ME2 LINE L1 -19 6145 5335 1309 229 45 63 chr6 24947731 24948296 -157466946 - MLT1D LTR MaLR -1 496 1 1018 266 96 24 chr6 24948337 24948964 -157466278 - L1ME2 LINE L1 -985 5161 4490 * 1088 262 27 40 chr6 24948961 24949438 -157465804 - L1ME2 LINE L1 -2060 4086 3616 349 248 73 41 chr6 24949470 24949688 -157465554 - L1ME2 LINE L1 -3069 3077 2853 426 180 174 23 chr6 24949817 24949989 -157465253 - MER33 DNA MER1_type -115 209 12 1173 65 0 0 chr6 24950283 24950436 -157464806 - AluY SINE Alu -5 306 154 2142 166 35 39 chr6 24951246 24951443 -157463799 + Tigger2a DNA MER2_type 2 198 -2510 1660 162 32 23 chr6 24951443 24951752 -157463490 - AluJb SINE Alu 0 312 1 2142 166 35 39 chr6 24951752 24951989 -157463253 + Tigger2a DNA MER2_type 198 434 0 193 244 81 70 chr6 24952096 24952261 -157462981 + MIR SINE MIR 45 212 -50 23 0 0 0 chr6 24952529 24952552 -157462690 + AT_rich Low_complexity Low_complexity 1 23 0 183 235 0 0 chr6 24952561 24952612 -157462630 + (TA)n Simple_repeat Simple_repeat 2 52 0 250 214 24 0 chr6 24953747 24953831 -157461411 + (TA)n Simple_repeat Simple_repeat 1 86 0 686 309 44 12 chr6 24954378 24954630 -157460612 - MIR SINE MIR 0 262 3 301 322 46 0 chr6 24955045 24955132 -157460110 + L2 LINE L2 3170 3260 -12 217 0 61 0 chr6 24955255 24955288 -157459954 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1704 150 28 7 chr6 24955296 24955582 -157459660 + AluJb SINE Alu 1 292 -20 1334 258 99 15 chr6 24956901 24957367 -157457875 + MLT1D LTR MaLR 1 505 0 183 80 0 0 chr6 24957508 24957533 -157457709 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr6 24957972 24957996 -157457246 + AT_rich Low_complexity Low_complexity 1 24 0 1109 208 21 0 chr6 24958060 24958301 -157456941 - Tigger6a DNA MER2_type 0 1083 838 623 208 0 0 chr6 24958309 24958429 -157456813 + AluJo SINE Alu 1 120 -192 603 169 25 33 chr6 24958429 24958882 -157456360 + GA-rich Low_complexity Low_complexity 1 449 0 664 218 170 0 chr6 24958883 24959030 -157456212 + AluJo SINE Alu 129 300 -12 3372 213 24 37 chr6 24959034 24959878 -157455364 - Tigger6a DNA MER2_type -250 833 1 22 0 0 0 chr6 24960800 24960822 -157454420 + AT_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr6 24961057 24961123 -157454119 + AT_rich Low_complexity Low_complexity 1 66 0 401 144 11 22 chr6 24961140 24961230 -157454012 - L1MA6 LINE L1 -5 6295 6207 289 339 85 21 chr6 24962124 24962360 -157452882 - MIR SINE MIR 0 262 12 1031 153 23 0 chr6 24963575 24963751 -157451491 - L1MB1 LINE L1 -330 5838 5659 692 158 0 0 chr6 24963753 24963867 -157451375 + L1MB1 LINE L1 5816 5929 -239 2251 124 14 6 chr6 24963881 24964245 -157450997 - L1PB1 LINE L1 -1 6150 5784 275 284 23 0 chr6 24964284 24964372 -157450870 + L1MC4 LINE L1 6614 6703 -1339 254 274 21 0 chr6 24964337 24964432 -157450810 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 * 244 260 0 62 chr6 24964394 24964490 -157450752 + L1MC4 LINE L1 6614 6703 -1339 * 279 250 0 22 chr6 24964442 24964534 -157450708 - L1MC4 LINE L1 -1339 6703 6614 245 301 24 0 chr6 24964509 24964592 -157450650 + L1MC4 LINE L1 6617 6701 -1341 * 252 297 0 22 chr6 24964561 24964652 -157450590 - L1MC4 LINE L1 -1340 6702 6614 2141 100 0 7 chr6 24964667 24964968 -157450274 - L1P5 LINE L1 -360 5791 5491 1296 176 4 0 chr6 24964968 24965205 -157450037 + L1MB1 LINE L1 5926 6165 -3 221 163 0 0 chr6 24965320 24965363 -157449879 + A-rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr6 24965639 24965682 -157449560 + AT_rich Low_complexity Low_complexity 1 43 0 364 276 110 7 chr6 24967493 24967638 -157447604 - L2 LINE L2 0 3313 3154 25 51 0 0 chr6 24969041 24969080 -157446162 + AT_rich Low_complexity Low_complexity 1 39 0 2182 107 19 16 chr6 24970160 24970469 -157444773 + AluSx SINE Alu 1 310 -2 273 171 61 12 chr6 24971225 24971307 -157443935 - L1ME4a LINE L1 -13 6108 6023 333 68 0 0 chr6 24971333 24971377 -157443865 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr6 24971609 24971629 -157443613 + (TG)n Simple_repeat Simple_repeat 1 20 0 237 108 0 0 chr6 24971634 24971671 -157443571 + (GA)n Simple_repeat Simple_repeat 1 37 0 201 302 0 0 chr6 24973415 24973468 -157441774 + CT-rich Low_complexity Low_complexity 2 54 0 300 394 28 6 chr6 24973930 24974110 -157441132 + MIR3 SINE MIR 4 187 -21 2421 54 0 7 chr6 24974600 24974894 -157440348 - AluY SINE Alu -19 292 1 207 228 18 18 chr6 24975220 24975277 -157439965 + CT-rich Low_complexity Low_complexity 5 61 0 1942 98 4 23 chr6 24975841 24976106 -157439136 + AluSq SINE Alu 1 260 -53 2206 66 16 53 chr6 24976344 24976664 -157438578 - AluSc SINE Alu -1 308 1 1965 119 63 0 chr6 24976874 24977160 -157438082 - AluSq SINE Alu -9 304 1 217 154 26 0 chr6 24978097 24978136 -157437106 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 227 193 147 55 chr6 24978144 24978253 -157436989 - MIR SINE MIR -93 169 51 302 346 49 25 chr6 24978311 24978473 -157436769 + L2 LINE L2 3106 3271 -1 1843 129 48 7 chr6 24979418 24979713 -157435529 + AluSx SINE Alu 1 307 -5 339 150 0 0 chr6 24979713 24979773 -157435469 + (GGGA)n Simple_repeat Simple_repeat 3 62 0 186 133 0 0 chr6 24979773 24979803 -157435439 + (A)n Simple_repeat Simple_repeat 1 30 0 287 273 78 0 chr6 24979840 24979917 -157435325 + MER58 DNA MER1_type 1 83 -2337 290 255 144 80 chr6 24980044 24980232 -157435010 - MER58C DNA MER1_type -15 200 1 283 246 12 114 chr6 24980268 24980435 -157434807 + MLT1J1 LTR MaLR 297 446 0 1612 306 113 7 chr6 24980435 24981151 -157434091 - L2 LINE L2 -249 3064 2258 23 33 0 0 chr6 24981324 24981354 -157433888 + AT_rich Low_complexity Low_complexity 1 30 0 720 310 76 17 chr6 24982715 24983137 -157432105 - LTR16A LTR ERVL -2 448 2 252 292 193 12 chr6 24983208 24983379 -157431863 - MIR SINE MIR -29 233 32 24 32 0 0 chr6 24983777 24983808 -157431434 + AT_rich Low_complexity Low_complexity 1 31 0 51 42 0 0 chr6 24983958 24984030 -157431212 + AT_rich Low_complexity Low_complexity 1 72 0 6437 189 22 9 chr6 24984313 24984404 -157430838 + L1PA16 LINE L1 2 90 -6759 2215 127 0 0 chr6 24984404 24984703 -157430539 - AluSx SINE Alu -13 299 1 6437 189 22 9 chr6 24984703 24986605 -157428637 + L1PA16 LINE L1 90 1677 -5172 8444 200 31 22 chr6 24986611 24987217 -157428025 + L1PA16 LINE L1 3534 4133 -2736 2213 140 31 0 chr6 24987217 24987568 -157427674 - THE1B LTR MaLR 0 364 3 8444 200 31 22 chr6 24987568 24989546 -157425696 + L1PA16 LINE L1 4133 6169 -700 1461 190 20 27 chr6 24989546 24989876 -157425366 + AluSx SINE Alu 1 312 0 8444 200 31 22 chr6 24989876 24990583 -157424659 + L1PA16 LINE L1 6169 6868 -1 240 335 40 29 chr6 24991280 24991453 -157423789 - L3b LINE CR1 -232 1351 1177 29227 100 11 45 chr6 24991453 24994338 -157420904 - L1PA8 LINE L1 0 6487 3503 427 48 32 0 chr6 24994338 24994400 -157420842 - AluY SINE Alu -6 305 242 29227 100 11 45 chr6 24994400 24997653 -157417589 - L1PA8 LINE L1 -2984 3503 371 882 268 92 42 chr6 25000799 25001179 -157414063 - L3b LINE CR1 -81 1502 1104 1531 303 48 35 chr6 25002168 25003039 -157412203 - L2 LINE L2 0 3313 2416 1607 254 72 59 chr6 25003093 25004254 -157410988 - L1 LINE L1 -1329 4817 3552 417 252 50 64 chr6 25004418 25004636 -157410606 - L1M4 LINE L1 -2006 4140 3926 561 260 77 0 chr6 25004781 25004962 -157410280 + MER58A DNA MER1_type 1 195 -29 319 329 64 66 chr6 25005044 25005301 -157409941 + L2 LINE L2 2757 3010 -303 216 0 0 0 chr6 25005302 25005326 -157409916 + (T)n Simple_repeat Simple_repeat 1 24 0 2121 113 27 3 chr6 25005842 25006142 -157409100 + AluSx SINE Alu 1 307 -5 185 248 50 91 chr6 25007404 25007525 -157407717 + L2 LINE L2 2560 2675 -639 205 247 41 14 chr6 25007680 25007753 -157407489 + (CATA)n Simple_repeat Simple_repeat 2 76 0 202 303 0 34 chr6 25007875 25007964 -157407278 + (CCCCAA)n Simple_repeat Simple_repeat 2 87 0 451 323 35 39 chr6 25008510 25008739 -157406503 - MIR SINE MIR -17 245 18 23 0 0 0 chr6 25008802 25008825 -157406417 + AT_rich Low_complexity Low_complexity 1 23 0 749 217 16 21 chr6 25009434 25009623 -157405619 - MER97c DNA MER1_type? -902 188 1 189 333 109 68 chr6 25011585 25011777 -157403465 + L3b LINE CR1 1367 1566 -17 245 29 29 0 chr6 25011973 25012007 -157403235 + (TA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 25012485 25012505 -157402737 + (A)n Simple_repeat Simple_repeat 1 20 0 1021 140 0 31 chr6 25013887 25014102 -157401140 + MLT1C LTR MaLR 197 462 -5 342 0 0 0 chr6 25014685 25014723 -157400519 + (TG)n Simple_repeat Simple_repeat 2 39 0 265 326 30 59 chr6 25014840 25014975 -157400267 + MIR SINE MIR 51 181 -81 207 0 0 0 chr6 25015294 25015317 -157399925 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 258 32 0 0 chr6 25015653 25015684 -157399558 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2094 112 7 0 chr6 25015684 25015962 -157399280 - AluSx SINE Alu -32 280 1 216 0 0 0 chr6 25016197 25016221 -157399021 + (T)n Simple_repeat Simple_repeat 1 24 0 799 289 125 49 chr6 25016811 25017665 -157397577 + L2 LINE L2 2347 3251 -62 1789 170 0 3 chr6 25019970 25020259 -157394983 - AluJb SINE Alu -24 288 1 1940 191 45 16 chr6 25023333 25023774 -157391468 - L1 LINE L1 -1592 4554 4101 621 213 0 39 chr6 25023778 25023933 -157391309 - L1 LINE L1 -2133 4013 3865 213 260 65 98 chr6 25024772 25024895 -157390347 - MIR3 SINE MIR -26 182 64 1181 305 11 44 chr6 25024910 25025431 -157389811 + L1MC3 LINE L1 3 506 -5539 474 280 13 27 chr6 25025537 25025687 -157389555 + L1MC3 LINE L1 570 717 -5328 7678 241 65 21 chr6 25025697 25029140 -157386102 + L1MC3 LINE L1 2949 5821 -743 2857 179 67 123 chr6 25029139 25030192 -157385050 + L1MC3 LINE L1 7162 8155 -48 * 186 43 0 0 chr6 25031621 25031644 -157383598 + (GAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr6 25032384 25032405 -157382837 + AT_rich Low_complexity Low_complexity 1 21 0 232 353 44 73 chr6 25033540 25033676 -157381566 + MIR SINE MIR 20 151 -111 676 283 49 83 chr6 25035434 25035844 -157379398 + L2 LINE L2 2817 3212 -101 2315 264 50 14 chr6 25035849 25036096 -157379146 + L1M4 LINE L1 3038 3274 -2872 840 10 0 0 chr6 25036096 25036194 -157379048 + L1PA2 LINE L1 6058 6155 0 2315 264 50 14 chr6 25036194 25036817 -157378425 + L1M4 LINE L1 3274 3940 -2206 183 204 0 0 chr6 25036864 25036913 -157378329 + (AGTTG)n Simple_repeat Simple_repeat 5 53 0 2171 91 0 7 chr6 25037032 25037345 -157377897 - AluSq SINE Alu 0 314 4 249 139 28 14 chr6 25037537 25037609 -157377633 + (TA)n Simple_repeat Simple_repeat 2 74 0 839 241 18 5 chr6 25037616 25037840 -157377402 + L1M4 LINE L1 3964 4190 -1956 1123 306 46 22 chr6 25037853 25038497 -157376745 + L1MCb LINE L1 1476 2179 -4566 470 296 82 10 chr6 25038893 25039089 -157376153 - MLT1J1 LTR MaLR -13 433 224 256 213 16 0 chr6 25040092 25040153 -157375089 + (AATTG)n Simple_repeat Simple_repeat 4 65 0 190 231 88 55 chr6 25040686 25040777 -157374465 - MIR SINE MIR -5 257 164 1965 137 26 11 chr6 25040805 25041155 -157374087 + L1MA2 LINE L1 5942 6296 -8 1608 206 29 29 chr6 25041822 25042196 -157373046 + MLT1A2 LTR MaLR 1 374 0 439 280 68 39 chr6 25042449 25042728 -157372514 + MER96B DNA MER1_type? 131 417 0 644 264 77 40 chr6 25042827 25043126 -157372116 + L1M4 LINE L1 3528 3837 -2309 420 260 0 10 chr6 25043127 25043227 -157372015 + MLT1C LTR MaLR 369 467 0 3067 221 99 90 chr6 25043232 25044425 -157370817 + L1MC4a LINE L1 6604 7807 -1 283 312 0 11 chr6 25044530 25044623 -157370619 + CT-rich Low_complexity Low_complexity 4 95 0 903 131 0 0 chr6 25045237 25045367 -157369875 + AluJb SINE Alu 4 133 -179 831 201 6 17 chr6 25045402 25045576 -157369666 + AluJb SINE Alu 126 297 -15 220 286 57 38 chr6 25046292 25046397 -157368845 + L2 LINE L2 1843 1949 -1365 1352 243 30 35 chr6 25046562 25046966 -157368276 - MER74B LTR ERVL -10 612 211 328 170 0 0 chr6 25047005 25047058 -157368184 - MER74B LTR ERVL -569 53 1 285 395 32 16 chr6 25047149 25047402 -157367840 + L2 LINE L2 2292 2548 -766 233 29 0 29 chr6 25047695 25047730 -157367512 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 242 242 116 42 chr6 25047994 25048089 -157367153 + L2 LINE L2 3160 3261 -11 25 31 0 0 chr6 25049194 25049226 -157366016 + AT_rich Low_complexity Low_complexity 1 32 0 286 298 100 29 chr6 25049700 25050009 -157365233 + L1ME4a LINE L1 5578 5908 -213 3045 174 92 6 chr6 25050638 25050727 -157364515 + L1MB3 LINE L1 5476 5556 -627 2177 60 0 0 chr6 25050727 25050993 -157364249 + AluY SINE Alu 34 299 -12 3045 174 92 6 chr6 25050993 25051553 -157363689 + L1MB3 LINE L1 5556 6181 -2 269 302 108 52 chr6 25052027 25052239 -157363003 + MIR SINE MIR 8 231 -31 360 313 102 36 chr6 25052720 25052886 -157362356 + MIR3 SINE MIR 3 179 -29 493 287 52 11 chr6 25054038 25054212 -157361030 + MIR SINE MIR 11 191 -71 871 287 60 81 chr6 25054599 25055265 -157359977 + HAL1 LINE L1 622 1273 -1234 288 252 97 32 chr6 25055282 25055437 -157359805 + HAL1 LINE L1 1386 1550 -957 368 296 19 58 chr6 25055444 25055650 -157359592 + HAL1 LINE L1 1682 1879 -628 356 367 105 0 chr6 25055680 25055909 -157359333 + HAL1 LINE L1 1664 1916 -591 1031 277 178 30 chr6 25055986 25056758 -157358484 + HAL1b LINE L1 427 1312 -36 1583 113 0 0 chr6 25057056 25057268 -157357974 - AluSq SINE Alu -9 304 93 521 324 39 0 chr6 25058044 25058226 -157357016 + MIR SINE MIR 11 199 -63 245 347 32 40 chr6 25058413 25058537 -157356705 + MIR SINE MIR 19 141 -67 832 255 24 19 chr6 25060085 25060293 -157354949 - MER3 DNA MER1_type 0 209 1 1839 187 59 36 chr6 25060380 25060818 -157354424 + MLT1C LTR MaLR 5 452 -15 429 242 58 74 chr6 25060872 25061062 -157354180 - LTR33A LTR ERVL -52 471 285 457 282 132 38 chr6 25061910 25062123 -157353119 + MIR SINE MIR 13 245 -17 321 336 36 7 chr6 25062324 25062461 -157352781 - MIR SINE MIR -31 231 91 554 345 43 13 chr6 25062464 25062699 -157352543 + MIR SINE MIR 21 262 0 235 211 178 22 chr6 25062769 25062859 -157352383 - HSMAR2 DNA Mariner -573 729 626 246 284 134 0 chr6 25062859 25062926 -157352316 + L2 LINE L2 3170 3245 -27 359 310 62 0 chr6 25063573 25063686 -157351556 - MER94 DNA DNA -14 120 1 22 56 0 0 chr6 25064327 25064363 -157350879 + AT_rich Low_complexity Low_complexity 1 36 0 840 288 91 42 chr6 25065352 25065738 -157349504 + MLT1L LTR MaLR 1 405 -210 485 322 91 21 chr6 25065865 25066107 -157349135 + L2 LINE L2 2719 2977 -337 12931 141 53 43 chr6 25066235 25068384 -157346858 - Tigger1 DNA MER2_type -3 2415 238 1723 153 84 0 chr6 25068384 25068659 -157346583 + AluSq SINE Alu 1 298 -15 12931 141 53 43 chr6 25068659 25068875 -157346367 - Tigger1 DNA MER2_type -2180 238 26 326 230 119 48 chr6 25068915 25069041 -157346201 + L2 LINE L2 3179 3313 0 21 0 0 0 chr6 25069319 25069340 -157345902 + AT_rich Low_complexity Low_complexity 1 21 0 399 277 80 49 chr6 25071564 25071769 -157343473 - MIR SINE MIR -52 210 1 182 402 24 12 chr6 25071785 25071949 -157343293 - L2 LINE L2 -221 3051 2886 328 383 74 0 chr6 25072099 25072274 -157342968 - MIR SINE MIR -13 249 62 1713 52 0 0 chr6 25072476 25072687 -157342555 + L1PA3 LINE L1 5945 6155 0 3225 34 0 0 chr6 25072688 25073071 -157342171 + L1PA3 LINE L1 5770 6152 -3 2247 114 10 0 chr6 25073100 25073407 -157341835 + AluSp SINE Alu 3 312 -1 1076 217 26 92 chr6 25074181 25074572 -157340670 + MLT1A1 LTR MaLR 1 365 0 270 104 75 0 chr6 25075316 25075383 -157339859 + (TTATA)n Simple_repeat Simple_repeat 1 72 0 214 406 23 8 chr6 25075931 25076064 -157339178 + MIR SINE MIR 7 141 -121 496 357 61 54 chr6 25076199 25076712 -157338530 + L2 LINE L2 2746 3260 -12 180 0 0 0 chr6 25077035 25077055 -157338187 + (TG)n Simple_repeat Simple_repeat 2 21 0 1122 166 9 36 chr6 25077690 25077913 -157337329 + AluJb SINE Alu 86 302 -10 250 231 13 26 chr6 25078191 25078269 -157336973 + (CTA)n Simple_repeat Simple_repeat 1 77 0 341 93 19 0 chr6 25078309 25078363 -157336879 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 393 22 0 0 chr6 25078373 25078419 -157336823 + (TG)n Simple_repeat Simple_repeat 2 47 0 397 307 118 49 chr6 25078824 25079231 -157336011 + L1ME LINE L1 4799 5233 -913 330 271 157 65 chr6 25079375 25079758 -157335484 + L1ME LINE L1 5309 5727 -394 2615 141 70 2 chr6 25079833 25080287 -157334955 + MER31A LTR ERV1 1 485 0 23 0 0 0 chr6 25080846 25080869 -157334373 + AT_rich Low_complexity Low_complexity 1 23 0 284 306 159 14 chr6 25081471 25081617 -157333625 - MIR SINE MIR -61 147 33 481 328 97 41 chr6 25081833 25082318 -157332924 - L1ME4a LINE L1 -50 6071 5560 878 204 6 0 chr6 25083040 25083202 -157332040 - FRAM SINE Alu -12 164 2 449 238 46 66 chr6 25085978 25086226 -157329016 + L2 LINE L2 2778 3011 -302 28 61 0 0 chr6 25087263 25087312 -157327930 + AT_rich Low_complexity Low_complexity 1 49 0 204 40 0 0 chr6 25089795 25089820 -157325422 + (T)n Simple_repeat Simple_repeat 1 25 0 211 241 109 58 chr6 25091237 25091374 -157323868 - MIR SINE MIR 0 262 119 2419 50 0 54 chr6 25092053 25092370 -157322872 + AluY SINE Alu 1 300 -11 180 97 0 0 chr6 25092374 25092405 -157322837 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 932 202 6 0 chr6 25092429 25092602 -157322640 + AluJb SINE Alu 123 296 -16 2830 88 21 26 chr6 25092674 25093097 -157322145 + L1MA1 LINE L1 5873 6293 -9 37 23 0 0 chr6 25093098 25093142 -157322100 + AT_rich Low_complexity Low_complexity 1 44 0 14282 135 33 7 chr6 25093142 25095457 -157319785 - Tigger1 DNA MER2_type -14 2404 30 295 338 89 19 chr6 25095645 25095914 -157319328 - LTR16C LTR ERVL -14 477 190 274 271 128 60 chr6 25097227 25097360 -157317882 + MLT1J2 LTR MaLR 301 442 -8 2218 110 0 0 chr6 25097386 25097685 -157317557 - AluSg SINE Alu -11 299 1 778 304 148 25 chr6 25097990 25098463 -157316779 - LTR67 LTR ERVL -24 533 3 2245 71 4 0 chr6 25100728 25101009 -157314233 + AluY SINE Alu 5 286 -25 31 0 0 0 chr6 25101009 25101040 -157314202 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr6 25101549 25101572 -157313670 + AT_rich Low_complexity Low_complexity 1 23 0 514 199 43 43 chr6 25101903 25102044 -157313198 - L1MC1 LINE L1 0 6613 6473 1736 174 146 6 chr6 25102044 25102407 -157312835 - MSTA LTR MaLR 0 428 15 1853 210 78 0 chr6 25102414 25102852 -157312390 - L1MC1 LINE L1 -138 6475 6004 7971 221 50 62 chr6 25102854 25104910 -157310332 - L1MC1 LINE L1 -783 5643 3563 2075 140 21 48 chr6 25104910 25105282 -157309960 - THE1B LTR MaLR -2 362 1 7971 221 50 62 chr6 25105282 25106994 -157308248 - L1MC1 LINE L1 -2863 3563 1928 1973 129 45 3 chr6 25106994 25107280 -157307962 + AluSx SINE Alu 1 298 -14 7971 221 50 62 chr6 25107280 25107557 -157307685 - L1MC1 LINE L1 -4498 1928 1649 848 182 78 29 chr6 25107562 25107804 -157307438 - L1MC1 LINE L1 -4994 1432 1179 1974 238 56 55 chr6 25107831 25108051 -157307191 + L1MD2 LINE L1 5454 5672 -687 1950 136 158 13 chr6 25108051 25108425 -157306817 + MSTA LTR MaLR 1 428 0 1974 238 56 55 chr6 25108425 25108882 -157306360 + L1MD2 LINE L1 5672 6132 -227 182 88 0 29 chr6 25108914 25108948 -157306294 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1039 212 47 56 chr6 25109049 25109370 -157305872 + Charlie2 DNA MER1_type 1858 2175 -687 464 222 32 32 chr6 25109564 25109690 -157305552 + MLT1B LTR MaLR 1 126 -264 1010 192 38 13 chr6 25109692 25110001 -157305241 - L1M3 LINE L1 -706 5474 5164 520 342 125 49 chr6 25110037 25110689 -157304553 - L2 LINE L2 -2 3270 2568 484 318 198 0 chr6 25110725 25111102 -157304140 + L2 LINE L2 2751 3215 -98 22 25 0 25 chr6 25111610 25111627 -157303615 + AT_rich Low_complexity Low_complexity 1 17 -22 1927 156 0 3 chr6 25111627 25111916 -157303326 - AluSx SINE Alu -23 289 2 22 25 0 25 chr6 25111916 25111938 -157303304 + AT_rich Low_complexity Low_complexity 17 39 0 265 227 15 0 chr6 25113379 25113445 -157301797 + MER4-int LTR ERV1 1111 1177 -5421 283 263 42 11 chr6 25113469 25113564 -157301678 - L1MEc LINE L1 -4687 1709 1612 236 260 27 0 chr6 25113692 25113765 -157301477 - L1MEc LINE L1 -4996 1400 1326 180 184 158 26 chr6 25114176 25114252 -157300990 - MIR3 SINE MIR -6 202 117 213 242 0 147 chr6 25114272 25114367 -157300875 - L2 LINE L2 -2 3270 3190 24 32 0 0 chr6 25114494 25114525 -157300717 + AT_rich Low_complexity Low_complexity 1 31 0 309 68 0 0 chr6 25116152 25116196 -157299046 + (CA)n Simple_repeat Simple_repeat 2 45 0 197 325 52 39 chr6 25116574 25116728 -157298514 - L2 LINE L2 -473 2841 2686 935 215 61 0 chr6 25117973 25118219 -157297023 - L1MD3 LINE L1 -9 7986 7726 243 215 81 0 chr6 25118220 25118288 -157296954 + L1MC4a LINE L1 7298 7363 -445 2322 132 11 21 chr6 25118302 25118681 -157296561 - THE1C LTR MaLR 0 375 1 9115 130 51 5 chr6 25118681 25120192 -157295050 - THE1C-int LTR MaLR 0 1580 1 1692 199 38 14 chr6 25120192 25120558 -157294684 - THE1C LTR MaLR 0 375 1 511 236 13 34 chr6 25120558 25120758 -157294484 + L1MC4 LINE L1 7359 7583 -251 537 248 89 32 chr6 25120832 25120989 -157294253 + FRAM SINE Alu 1 166 0 407 286 122 19 chr6 25121841 25122054 -157293188 - MIR SINE MIR 0 262 28 31 44 0 0 chr6 25122545 25122590 -157292652 + AT_rich Low_complexity Low_complexity 1 45 0 3710 170 16 40 chr6 25122710 25123500 -157291742 - L1MC1 LINE L1 -8 6325 5555 250 373 27 27 chr6 25123626 25123736 -157291506 + MER5B DNA MER1_type 69 178 0 3808 156 19 33 chr6 25124377 25125109 -157290133 + MER50 LTR ERV1 1 722 -12 307 338 56 6 chr6 25125156 25125316 -157289926 + LTR16B LTR ERVL 137 304 -160 3120 151 24 6 chr6 25125326 25125862 -157289380 + MER41C LTR ERV1 9 554 0 3684 144 14 65 chr6 25127208 25127936 -157287306 - LTR8 LTR ERV1 0 691 1 385 280 80 0 chr6 25128013 25128138 -157287104 - MER5A DNA MER1_type 0 189 55 237 227 45 91 chr6 25128259 25128347 -157286895 - MER5A DNA MER1_type -102 87 4 400 280 19 19 chr6 25130298 25130405 -157284837 - L2 LINE L2 -12 3301 3195 225 94 0 0 chr6 25130807 25130839 -157284403 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 443 274 98 7 chr6 25131041 25131194 -157284048 - MIR3 SINE MIR -12 196 30 347 314 29 40 chr6 25132356 25132531 -157282711 - MLT1K LTR MaLR -284 304 132 617 222 72 75 chr6 25132659 25132993 -157282249 + MER57A LTR ERV1 68 400 -3 210 309 170 11 chr6 25133731 25133825 -157281417 + MIR3 SINE MIR 5 113 -95 24 0 0 0 chr6 25134447 25134471 -157280771 + AT_rich Low_complexity Low_complexity 1 24 0 241 244 49 130 chr6 25134644 25134767 -157280475 - L2 LINE L2 0 3313 3201 25 31 0 0 chr6 25136197 25136229 -157279013 + AT_rich Low_complexity Low_complexity 1 32 0 1955 167 37 42 chr6 25136312 25136674 -157278568 + MSTB1 LTR MaLR 1 362 -70 2502 57 0 0 chr6 25136674 25136970 -157278272 - AluY SINE Alu -15 296 1 1955 167 37 42 chr6 25136970 25137037 -157278205 + MSTB1 LTR MaLR 362 428 -4 370 240 29 19 chr6 25137486 25137590 -157277652 - MLT1J2 LTR MaLR -287 163 59 1812 144 11 7 chr6 25137625 25137909 -157277333 - AluJb SINE Alu -27 285 1 293 241 88 44 chr6 25138701 25138838 -157276404 - MLT1J LTR MaLR -37 474 332 353 336 33 56 chr6 25139249 25139463 -157275779 - L2 LINE L2 -188 3084 2876 183 311 149 0 chr6 25139495 25139569 -157275673 - L2 LINE L2 -435 2879 2795 2150 122 0 0 chr6 25140276 25140563 -157274679 - AluSx SINE Alu -25 287 1 1237 163 5 0 chr6 25140874 25141076 -157274166 - MER2 DNA MER2_type -135 210 8 180 0 0 0 chr6 25141922 25141942 -157273300 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr6 25142106 25142139 -157273103 + AT_rich Low_complexity Low_complexity 1 33 0 697 320 34 6 chr6 25142295 25142473 -157272769 - MER91A DNA MER1_type -13 183 1 246 32 0 0 chr6 25142531 25142562 -157272680 + (TTG)n Simple_repeat Simple_repeat 2 32 0 223 350 55 38 chr6 25142805 25142988 -157272254 - MIR SINE MIR -48 214 29 917 286 54 60 chr6 25143091 25143763 -157271479 - L2 LINE L2 -4 3309 2626 221 303 26 13 chr6 25143791 25143867 -157271375 - L2 LINE L2 -782 2532 2456 22 0 0 0 chr6 25144273 25144295 -157270947 + AT_rich Low_complexity Low_complexity 1 22 0 285 344 11 0 chr6 25144688 25144781 -157270461 + MIR SINE MIR 168 261 -1 679 202 0 0 chr6 25144933 25145047 -157270195 - MER81 DNA DNA 0 114 1 1055 291 8 16 chr6 25145487 25145869 -157269373 + L1ME1 LINE L1 5771 6149 -17 789 183 0 0 chr6 25146197 25146350 -157268892 + (CA)n Simple_repeat Simple_repeat 1 153 0 1464 234 24 33 chr6 25146358 25146915 -157268327 - L1MC/D LINE L1 -686 5673 5127 22 56 0 0 chr6 25147210 25147246 -157267996 + AT_rich Low_complexity Low_complexity 1 36 0 244 321 30 30 chr6 25148213 25148347 -157266895 + MIR SINE MIR 123 256 -6 22 35 0 0 chr6 25148767 25148796 -157266446 + AT_rich Low_complexity Low_complexity 1 29 0 1759 150 60 119 chr6 25149619 25149839 -157265403 + MSTB LTR MaLR 2 183 -243 2063 109 7 0 chr6 25149839 25150113 -157265129 - AluSq SINE Alu -37 276 1 1759 150 60 119 chr6 25150113 25150344 -157264898 + MSTB LTR MaLR 183 426 0 795 309 153 15 chr6 25150713 25151333 -157263909 + L2 LINE L2 2599 3308 -5 213 362 62 45 chr6 25151532 25151935 -157263307 + L2 LINE L2 1530 1939 -1375 379 323 67 27 chr6 25152927 25153224 -157262018 + L1MC/D LINE L1 5445 5753 -2055 701 262 99 4 chr6 25153593 25153826 -157261416 - MIR SINE MIR 0 262 8 198 0 0 0 chr6 25155510 25155532 -157259710 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1899 130 7 4 chr6 25155845 25156121 -157259121 + AluSg SINE Alu 1 277 -33 243 0 0 0 chr6 25156125 25156152 -157259090 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr6 25156205 25156229 -157259013 + AT_rich Low_complexity Low_complexity 1 24 0 1695 183 94 40 chr6 25156560 25156893 -157258349 + MSTB LTR MaLR 1 361 -65 2385 100 6 0 chr6 25156893 25157204 -157258038 - AluSq SINE Alu 0 313 1 1695 183 94 40 chr6 25157204 25157274 -157257968 + MSTB LTR MaLR 361 426 0 343 310 82 35 chr6 25158289 25158544 -157256698 - LTR16A LTR ERVL -159 291 25 2069 108 0 7 chr6 25158661 25158949 -157256293 - AluSc SINE Alu -23 286 1 354 254 28 56 chr6 25159341 25159483 -157255759 - HERV16 LTR ERVL -809 4845 4708 570 293 142 21 chr6 25159532 25159870 -157255372 - HERV16 LTR ERVL -1103 4661 4283 341 337 50 44 chr6 25159901 25160638 -157254604 - HERV16 LTR ERVL -1288 4197 3440 344 328 42 32 chr6 25160840 25161031 -157254211 - HERV16 LTR ERVL -1905 3091 2937 1409 298 125 28 chr6 25161140 25161844 -157253398 - HERV16 LTR ERVL -2628 2368 1597 3103 46 0 10 chr6 25161861 25162249 -157252993 - L1PA7 LINE L1 0 6154 5771 3710 53 25 0 chr6 25162661 25163133 -157252109 + L1PA5 LINE L1 5669 6152 -2 1177 289 65 37 chr6 25163210 25163806 -157251436 - HERV16 LTR ERVL -4056 940 328 843 337 90 3 chr6 25164107 25164496 -157250746 - LTR16A LTR ERVL -10 440 18 1488 174 0 0 chr6 25164940 25165198 -157250044 - Tigger3(Golem) DNA MER2_type 0 3029 2772 653 206 76 0 chr6 25165195 25165326 -157249916 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 1743 213 3 14 chr6 25166074 25166445 -157248797 + MER21B LTR ERV1 1 454 -477 2002 147 27 51 chr6 25166457 25166866 -157248376 - MSTB1 LTR MaLR -18 414 16 1420 224 75 36 chr6 25166846 25167288 -157247954 + MER21B LTR ERV1 354 812 -51 * 333 47 0 0 chr6 25167622 25167665 -157247577 + (CA)n Simple_repeat Simple_repeat 1 43 0 188 167 21 0 chr6 25167666 25167714 -157247528 + CT-rich Low_complexity Low_complexity 1 49 0 5453 232 67 24 chr6 25167727 25170703 -157244539 + L1MC2 LINE L1 1435 4633 -1793 843 235 162 15 chr6 25170705 25171035 -157244207 - MSTB2 LTR MaLR 0 396 1 4350 175 46 79 chr6 25171041 25171215 -157244027 + L1MC2 LINE L1 5407 5585 -1039 1877 169 0 7 chr6 25171215 25171511 -157243731 - AluSx SINE Alu -18 294 1 4350 175 46 79 chr6 25171511 25171810 -157243432 + L1MC2 LINE L1 5585 5892 -732 1034 169 6 12 chr6 25171810 25171976 -157243266 - FAM SINE Alu -7 168 4 4350 175 46 79 chr6 25171976 25172131 -157243111 + L1MC2 LINE L1 5892 6051 -573 2426 51 0 3 chr6 25172131 25172425 -157242817 - AluY SINE Alu -18 293 1 4350 175 46 79 chr6 25172425 25172787 -157242455 + L1MC2 LINE L1 6051 6373 -251 2216 114 0 3 chr6 25172787 25173094 -157242148 - AluSx SINE Alu 0 312 7 4350 175 46 79 chr6 25173094 25173327 -157241915 + L1MC2 LINE L1 6373 6612 -12 1090 258 121 12 chr6 25177446 25177768 -157237474 - MER69 DNA AcHobo -2160 366 10 551 298 154 41 chr6 25178574 25178721 -157236521 - L2 LINE L2 -4 3309 3180 2578 70 38 5 chr6 25178721 25179091 -157236151 + L1PA7 LINE L1 5773 6154 0 551 298 154 41 chr6 25179091 25179468 -157235774 - L2 LINE L2 -133 3180 2713 1429 158 98 21 chr6 25179468 25179753 -157235489 - AluJo SINE Alu -5 307 1 551 298 154 41 chr6 25179753 25179803 -157235439 - L2 LINE L2 -600 2713 2670 186 43 0 0 chr6 25180527 25180550 -157234692 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr6 25182094 25182134 -157233108 + AT_rich Low_complexity Low_complexity 1 40 0 2392 61 3 0 chr6 25182524 25182818 -157232424 - AluY SINE Alu -16 295 1 228 350 94 33 chr6 25183052 25183232 -157232010 + L3b LINE CR1 1391 1581 -2 180 171 171 57 chr6 25183904 25183974 -157231268 - MIR SINE MIR -31 231 154 204 182 0 0 chr6 25184437 25184481 -157230761 + GA-rich Low_complexity Low_complexity 2 45 0 * 336 102 0 0 chr6 25184475 25184524 -157230718 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 843 123 0 34 chr6 25184513 25184692 -157230550 + (GGGAA)n Simple_repeat Simple_repeat 5 177 0 14249 62 6 1 chr6 25184857 25187508 -157227734 + L1PA5 LINE L1 3494 6148 -6 22 35 0 0 chr6 25187588 25187617 -157227625 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 25188111 25188132 -157227110 + GC_rich Low_complexity Low_complexity 1 21 0 621 157 0 0 chr6 25188321 25188436 -157226806 + GA-rich Low_complexity Low_complexity 2 116 0 297 319 15 15 chr6 25188482 25188617 -157226625 + L1ME LINE L1 352 486 -5886 1685 267 57 53 chr6 25188634 25188687 -157226555 + L1ME LINE L1 415 466 -5906 1306 233 101 34 chr6 25188687 25189125 -157226117 + MLT1C LTR MaLR 1 467 0 1685 267 57 53 chr6 25189125 25189915 -157225327 + L1ME LINE L1 466 1261 -5111 430 289 59 8 chr6 25189882 25190138 -157225104 + L1ME LINE L1 1174 1442 -4942 * 1495 224 60 70 chr6 25190139 25190598 -157224644 - L1MCc LINE L1 -1484 5457 5004 1690 160 20 36 chr6 25190598 25190904 -157224338 + AluJb SINE Alu 1 301 -11 1495 224 60 70 chr6 25190904 25191042 -157224200 - L1MCc LINE L1 -1937 5004 4866 1397 200 33 23 chr6 25191051 25191356 -157223886 + AluJb SINE Alu 3 310 -2 267 152 0 0 chr6 25191359 25191405 -157223837 + GA-rich Low_complexity Low_complexity 4 49 0 1087 135 0 8 chr6 25191408 25191770 -157223472 + (GGAA)n Simple_repeat Simple_repeat 1 360 0 209 176 0 20 chr6 25191770 25191821 -157223421 + GA-rich Low_complexity Low_complexity 1 50 0 2109 264 74 26 chr6 25191830 25192494 -157222748 - L1MCc LINE L1 -2085 4856 4116 1703 171 77 12 chr6 25192494 25192821 -157222421 - MER7A DNA MER2_type 0 346 1 2109 264 74 26 chr6 25192821 25193260 -157221982 - L1MCc LINE L1 -2825 4116 3700 236 212 15 0 chr6 25193331 25193397 -157221845 + (TA)n Simple_repeat Simple_repeat 1 67 0 455 105 13 0 chr6 25193404 25193480 -157221762 + L1MA9 LINE L1 6231 6307 -5 450 304 60 0 chr6 25193497 25193681 -157221561 - L1MCc LINE L1 -3317 3624 3430 1603 265 88 23 chr6 25193695 25194560 -157220682 - L1MCc LINE L1 -4681 2191 795 1834 183 38 9 chr6 25194649 25194994 -157220248 + MLT1A1 LTR MaLR 11 365 0 1231 170 59 0 chr6 25195730 25195983 -157219259 - L1MA7 LINE L1 -26 6265 5998 872 291 86 12 chr6 25196079 25196484 -157218758 - L1MCc LINE L1 -5985 438 4 345 378 0 0 chr6 25196615 25196734 -157218508 - MLT1I LTR MaLR -89 320 202 489 314 88 49 chr6 25197078 25197530 -157217712 + L3b LINE CR1 1105 1574 -9 240 219 0 27 chr6 25197907 25197944 -157217298 + (TATATG)n Simple_repeat Simple_repeat 6 42 -34 1939 190 3 0 chr6 25197944 25198291 -157216951 - MER7A DNA MER2_type 0 346 1 240 219 0 27 chr6 25198291 25198326 -157216916 + (TATATG)n Simple_repeat Simple_repeat 42 76 0 21 0 0 0 chr6 25199276 25199297 -157215945 + AT_rich Low_complexity Low_complexity 1 21 0 1453 299 42 28 chr6 25199899 25200550 -157214692 - Charlie7 DNA MER1_type -1889 723 64 30 0 0 0 chr6 25201643 25201673 -157213569 + AT_rich Low_complexity Low_complexity 1 30 0 1957 176 0 0 chr6 25204507 25204819 -157210423 - AluJb SINE Alu 0 312 1 957 360 48 12 chr6 25205431 25205850 -157209392 - MLT2E LTR ERVL -192 436 3 6185 281 57 39 chr6 25206119 25207873 -157207369 - ERVL LTR ERVL -387 5377 3571 3351 98 4 2 chr6 25207873 25208323 -157206919 - MLT2A2 LTR ERVL 0 453 3 6185 281 57 39 chr6 25208323 25208839 -157206403 - ERVL LTR ERVL -2193 3571 3066 1653 290 54 12 chr6 25208832 25209505 -157205737 - ERVL LTR ERVL -2644 3010 2306 * 213 263 12 50 chr6 25209802 25209882 -157205360 + L2 LINE L2 3232 3308 -5 468 229 57 8 chr6 25210238 25210360 -157204882 + MER94 DNA DNA 2 129 -5 24 0 0 0 chr6 25212154 25212178 -157203064 + AT_rich Low_complexity Low_complexity 1 24 0 529 231 33 0 chr6 25212297 25212418 -157202824 - L1MC4a LINE L1 -992 6816 6692 180 0 0 0 chr6 25212571 25212591 -157202651 + (T)n Simple_repeat Simple_repeat 1 20 0 1866 124 8 0 chr6 25212591 25212850 -157202392 - AluSq SINE Alu -50 263 3 1051 311 125 22 chr6 25215305 25215904 -157199338 + MLT2F LTR ERVL 3 663 0 258 32 0 0 chr6 25216668 25216699 -157198543 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 88 0 0 chr6 25218289 25218323 -157196919 + (GA)n Simple_repeat Simple_repeat 1 34 0 275 289 32 90 chr6 25219768 25219924 -157195318 + MIR SINE MIR 34 180 -82 852 162 11 76 chr6 25221752 25221937 -157193305 + MLT1C LTR MaLR 3 175 -292 958 141 0 12 chr6 25221952 25222122 -157193120 + L1M2 LINE L1 2188 2355 -4494 908 202 27 11 chr6 25222184 25222372 -157192870 + MLT1C LTR MaLR 276 466 -1 221 375 73 0 chr6 25222613 25222709 -157192533 + L2 LINE L2 3125 3227 -45 201 196 0 0 chr6 25225612 25225663 -157189579 + (CA)n Simple_repeat Simple_repeat 1 51 0 236 244 0 0 chr6 25225811 25225856 -157189386 + MER5B DNA MER1_type 6 50 -128 924 78 0 0 chr6 25225978 25226093 -157189149 + AluY SINE Alu 168 282 -29 258 56 0 0 chr6 25226093 25226129 -157189113 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 379 252 0 59 chr6 25226174 25226293 -157188949 + MER5B DNA MER1_type 60 171 -7 222 350 20 10 chr6 25226306 25226406 -157188836 + MIR SINE MIR 118 218 -44 33 0 0 0 chr6 25226928 25226961 -157188281 + AT_rich Low_complexity Low_complexity 1 33 0 452 269 81 12 chr6 25227156 25227316 -157187926 + MIR3 SINE MIR 37 207 -1 243 192 67 29 chr6 25228161 25228265 -157186977 + HAL1 LINE L1 46 153 -2354 1278 106 0 0 chr6 25228446 25228616 -157186626 + AluSq SINE Alu 1 170 -143 288 0 0 0 chr6 25229148 25229180 -157186062 + (TA)n Simple_repeat Simple_repeat 2 33 0 614 152 9 0 chr6 25229180 25229285 -157185957 - AluSg/x SINE Alu -12 298 193 1822 131 4 4 chr6 25229546 25229806 -157185436 - AluSq SINE Alu -53 260 1 273 312 9 37 chr6 25229880 25229989 -157185253 - MER5B DNA MER1_type -71 107 2 261 213 160 0 chr6 25230681 25230775 -157184467 + L1MC/D LINE L1 5665 5773 -2035 24 32 0 0 chr6 25231021 25231052 -157184190 + AT_rich Low_complexity Low_complexity 1 31 0 4256 218 62 46 chr6 25232400 25233147 -157182095 - L1MC1 LINE L1 -18 6595 5862 6838 59 8 3 chr6 25233147 25234545 -157180697 + L1PA5 LINE L1 4748 6149 -5 4256 218 62 46 chr6 25234545 25234649 -157180593 - L1MC1 LINE L1 -751 5862 5761 2440 86 53 0 chr6 25234649 25234986 -157180256 + THE1A LTR MaLR 1 355 0 4256 218 62 46 chr6 25234986 25236759 -157178483 - L1MC1 LINE L1 -852 5761 3854 1025 161 6 11 chr6 25236760 25236934 -157178308 - MER6B DNA MER2_type 0 210 38 3782 220 60 26 chr6 25236943 25238685 -157176557 - L1MC1 LINE L1 -2592 3834 2036 2013 168 24 63 chr6 25238697 25239107 -157176135 - MSTB LTR MaLR -32 394 1 8404 180 17 25 chr6 25239107 25240771 -157174471 - MSTB-int LTR MaLR 0 1651 1 2382 174 21 5 chr6 25240771 25241190 -157174052 - MSTB LTR MaLR 0 426 1 7036 190 46 30 chr6 25241191 25242550 -157172692 - L1MC1 LINE L1 -4399 2027 538 207 0 0 0 chr6 25242550 25242573 -157172669 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7036 190 46 30 chr6 25242573 25243101 -157172141 - L1MC1 LINE L1 -5888 538 20 38 22 0 0 chr6 25243496 25243541 -157171701 + AT_rich Low_complexity Low_complexity 1 45 0 281 330 25 106 chr6 25243637 25243873 -157171369 + MIR SINE MIR 46 262 0 238 337 102 10 chr6 25244185 25244283 -157170959 + MIR SINE MIR 19 125 -83 1776 175 75 0 chr6 25244292 25244612 -157170630 - MER7A DNA MER2_type -2 344 3 2420 34 41 0 chr6 25244999 25245293 -157169949 + AluY SINE Alu 1 306 -5 25 75 0 0 chr6 25245400 25245453 -157169789 + AT_rich Low_complexity Low_complexity 1 53 0 237 356 44 0 chr6 25246675 25246765 -157168477 + MIR SINE MIR 22 115 -93 207 0 0 0 chr6 25247289 25247312 -157167930 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 242 50 61 chr6 25247792 25247891 -157167351 + LTR67 LTR ERVL 419 516 -41 1630 152 105 31 chr6 25248733 25248983 -157166259 - MER7A DNA MER2_type -2693 345 66 2246 127 0 0 chr6 25248983 25249290 -157165952 - AluSq SINE Alu -6 307 1 1630 152 105 31 chr6 25249290 25249362 -157165880 - MER7A DNA MER2_type -2972 66 1 1797 126 35 53 chr6 25251358 25251676 -157163566 + AluSx SINE Alu 1 312 0 2039 194 2 37 chr6 25251784 25252192 -157163050 - MSTD LTR MaLR 0 396 3 6510 238 67 19 chr6 25252194 25253840 -157161402 - MSTD-int LTR MaLR 0 1735 11 1651 201 39 49 chr6 25253844 25253903 -157161339 - MSTD LTR MaLR -11 385 327 2921 6 0 0 chr6 25253903 25254218 -157161024 + AluYb8 SINE Alu 1 315 -3 1651 201 39 49 chr6 25254218 25254547 -157160695 - MSTD LTR MaLR -69 327 1 364 288 33 47 chr6 25255416 25255628 -157159614 - L1MC4 LINE L1 -1026 7016 6808 192 97 0 0 chr6 25257002 25257033 -157158209 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 2585 48 3 3 chr6 25257419 25257728 -157157514 + AluY SINE Alu 3 311 0 237 163 0 0 chr6 25257901 25257950 -157157292 + A-rich Low_complexity Low_complexity 4 52 0 294 263 26 40 chr6 25258037 25258113 -157157129 - L2 LINE L2 -47 3266 3192 27 49 0 0 chr6 25261085 25261126 -157154116 + AT_rich Low_complexity Low_complexity 1 41 0 1390 116 65 0 chr6 25261340 25261555 -157153687 - MER30 DNA MER1_type -1 229 1 260 295 24 69 chr6 25262427 25262592 -157152650 - MIR SINE MIR -41 167 11 1165 209 146 7 chr6 25262702 25263004 -157152238 + MER2 DNA MER2_type 1 344 -1 27 0 0 0 chr6 25263536 25263563 -157151679 + AT_rich Low_complexity Low_complexity 1 27 0 200 264 0 42 chr6 25263583 25263655 -157151587 + A-rich Low_complexity Low_complexity 5 73 0 181 362 7 7 chr6 25263729 25263867 -157151375 + L2 LINE L2 2827 2964 -308 269 287 55 105 chr6 25264238 25264419 -157150823 + MER5B DNA MER1_type 7 178 0 336 325 124 18 chr6 25264709 25264878 -157150364 + MIR SINE MIR 1 187 -75 318 336 81 20 chr6 25266469 25266618 -157148624 - L2 LINE L2 0 3272 3115 2133 117 0 7 chr6 25266735 25267026 -157148216 + AluSg SINE Alu 1 289 -21 254 320 13 0 chr6 25267903 25267978 -157147264 - L2 LINE L2 -12 3260 3185 1121 128 17 39 chr6 25267987 25268167 -157147075 + AluSg/x SINE Alu 115 290 -20 226 164 18 0 chr6 25268173 25268228 -157147014 + L1MCa LINE L1 2006 2061 -4365 272 271 35 0 chr6 25268273 25268358 -157146884 + L1MC4 LINE L1 6614 6701 -1341 2078 114 17 17 chr6 25268717 25269016 -157146226 + AluSx SINE Alu 4 302 -10 7713 26 1 0 chr6 25269016 25270643 -157144599 + L1PA3 LINE L1 4528 6155 0 238 193 34 0 chr6 25271184 25271208 -157144034 + (TATATG)n Simple_repeat Simple_repeat 1 23 -68 2485 160 87 58 chr6 25271208 25271548 -157143694 + MER6A DNA MER2_type 2 368 -497 2022 150 7 0 chr6 25271548 25271855 -157143387 + AluSx SINE Alu 3 311 -1 2485 160 87 58 chr6 25271855 25272101 -157143141 + MER6A DNA MER2_type 368 605 0 238 193 34 0 chr6 25272101 25272164 -157143078 + (TATATG)n Simple_repeat Simple_repeat 23 91 0 47 78 0 0 chr6 25274626 25274729 -157140513 + AT_rich Low_complexity Low_complexity 1 103 0 421 327 187 21 chr6 25275517 25276160 -157139082 - L2 LINE L2 -1 3312 2550 326 300 133 48 chr6 25276359 25276395 -157138847 - L1MC4a LINE L1 -1898 5910 5875 399 288 158 42 chr6 25276395 25276756 -157138486 - L1MB7 LINE L1 -320 5864 5462 600 275 162 28 chr6 25276939 25277223 -157138019 - L2 LINE L2 -955 2359 2038 217 324 35 56 chr6 25278861 25279003 -157136239 - L2 LINE L2 -1483 1831 1693 354 297 193 34 chr6 25279117 25279386 -157135856 - L2 LINE L2 -2772 542 231 226 279 41 93 chr6 25280189 25280343 -157134899 + MIR SINE MIR 13 162 -62 414 250 21 35 chr6 25282046 25282190 -157133052 - L1ME LINE L1 -460 5661 5520 229 343 137 20 chr6 25282252 25282398 -157132844 - L2 LINE L2 -8 3264 3102 217 345 62 18 chr6 25282705 25282818 -157132424 + MIR3 SINE MIR 6 123 -85 236 280 161 35 chr6 25283125 25283268 -157131974 + L2 LINE L2 3152 3312 -1 593 0 28 0 chr6 25283767 25283839 -157131403 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1537 215 133 95 chr6 25283886 25284625 -157130617 - L1ME2 LINE L1 -9 6224 5458 2044 147 0 3 chr6 25284631 25284938 -157130304 - AluSx SINE Alu -4 308 3 2183 127 0 0 chr6 25285017 25285317 -157129925 - AluSq SINE Alu -13 300 1 3596 259 83 15 chr6 25285337 25286934 -157128308 - L1ME2 LINE L1 -813 5402 3697 705 251 87 18 chr6 25286959 25287350 -157127892 - L1ME2 LINE L1 -2842 3373 2956 599 338 34 22 chr6 25287348 25287668 -157127574 - L1ME2 LINE L1 -5972 424 101 * 37 23 0 0 chr6 25287877 25287921 -157127321 + AT_rich Low_complexity Low_complexity 1 44 0 1513 244 161 16 chr6 25288108 25288604 -157126638 - MLT1E LTR MaLR -25 568 1 286 151 27 0 chr6 25288641 25288714 -157126528 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 386 316 26 32 chr6 25288806 25289148 -157126094 + L1ME3 LINE L1 1277 1616 -4780 368 99 37 12 chr6 25289152 25289233 -157126009 + (TA)n Simple_repeat Simple_repeat 2 84 0 696 281 33 24 chr6 25289253 25289702 -157125540 + L1ME3 LINE L1 5081 5534 -709 824 291 67 17 chr6 25289726 25290084 -157125158 + L1ME3 LINE L1 5854 6229 -2 580 293 5 49 chr6 25290393 25290598 -157124644 - MIR SINE MIR -6 256 61 242 250 0 17 chr6 25290600 25290660 -157124582 + L2 LINE L2 3254 3312 -1 369 315 293 6 chr6 25290856 25291180 -157124062 - L2 LINE L2 0 3313 2897 295 265 10 10 chr6 25291523 25291621 -157123621 - MER5A DNA MER1_type -83 106 9 287 348 81 6 chr6 25291960 25292121 -157123121 - L2 LINE L2 -6 3307 3135 22 0 0 0 chr6 25292646 25292668 -157122574 + AT_rich Low_complexity Low_complexity 1 22 0 280 307 193 0 chr6 25294523 25294663 -157120579 + L2 LINE L2 3145 3311 -2 624 279 20 56 chr6 25295008 25295259 -157119983 + MIR SINE MIR 2 243 -19 1548 136 3 92 chr6 25295760 25296076 -157119166 - AluJb SINE Alu -20 292 5 225 161 69 0 chr6 25296471 25296558 -157118684 + (TA)n Simple_repeat Simple_repeat 1 93 0 673 304 75 8 chr6 25296938 25297191 -157118051 - MLT1J LTR MaLR -4 507 238 6695 213 60 60 chr6 25297455 25300287 -157114955 + L1MC3 LINE L1 5281 7995 0 630 199 171 0 chr6 25301220 25301401 -157113841 - L1MA4 LINE L1 -6 6294 6083 1698 156 3 11 chr6 25301483 25301765 -157113477 - AluJb SINE Alu -32 280 1 2533 57 0 13 chr6 25301979 25302294 -157112948 + AluY SINE Alu 1 311 0 6641 28 13 1 chr6 25302296 25303090 -157112152 + L1PA5 LINE L1 5352 6154 0 312 326 78 0 chr6 25303221 25303362 -157111880 + MIR SINE MIR 105 256 -6 201 323 50 20 chr6 25304577 25304676 -157110566 + L2 LINE L2 2588 2689 -625 889 279 50 76 chr6 25306292 25306753 -157108489 + L1ME LINE L1 13 460 -5610 2285 122 0 0 chr6 25306753 25307064 -157108178 + AluSx SINE Alu 2 312 0 889 279 50 76 chr6 25307064 25307139 -157108103 + L1ME LINE L1 460 535 -5535 286 293 105 19 chr6 25307166 25307432 -157107810 + L1ME LINE L1 616 904 -5166 678 278 40 31 chr6 25307432 25307655 -157107587 - MLT2F LTR ERVL -438 225 1 1496 191 0 11 chr6 25307782 25308055 -157107187 + AluJb SINE Alu 31 300 -12 928 267 98 4 chr6 25308255 25308532 -157106710 - ERVL LTR ERVL -371 5393 5091 1099 251 67 6 chr6 25308532 25308847 -157106395 + MLT1C LTR MaLR 6 339 -128 2061 275 14 29 chr6 25308848 25309405 -157105837 - ERVL LTR ERVL -1937 3827 3279 2673 255 81 25 chr6 25309418 25310593 -157104649 - ERVL LTR ERVL -2692 3072 1795 312 268 82 0 chr6 25310594 25310691 -157104551 + L1M4 LINE L1 4260 4364 -1782 747 303 56 14 chr6 25310692 25310976 -157104266 - ERVL LTR ERVL -4704 1060 765 700 193 225 0 chr6 25311572 25311759 -157103483 - MLT2F LTR ERVL -2 661 433 1350 228 102 39 chr6 25311769 25312151 -157103091 - MLT1F1 LTR MaLR -6 561 156 594 240 0 27 chr6 25312162 25312312 -157102930 + MLT1A1 LTR MaLR 13 158 -207 1612 76 23 1 chr6 25312312 25312648 -157102594 - L1PA8 LINE L1 -691 5481 5141 5055 76 4 7 chr6 25312648 25313328 -157101914 + L1PA8 LINE L1 5493 6171 -1 980 227 14 5 chr6 25313336 25313556 -157101686 + MLT1A1 LTR MaLR 144 365 0 513 208 92 8 chr6 25313561 25313681 -157101561 - MLT1F1 LTR MaLR -428 139 10 1137 254 69 40 chr6 25313699 25314219 -157101023 + L1ME2 LINE L1 5627 6161 -3 234 197 79 150 chr6 25314501 25314628 -157100614 + MLT1H LTR MaLR 229 346 -203 193 305 189 24 chr6 25316220 25316367 -157098875 + MIR SINE MIR 15 193 -69 2102 89 0 0 chr6 25316367 25316658 -157098584 + L1PA8 LINE L1 5878 6168 -4 193 305 189 24 chr6 25316658 25316674 -157098568 + MIR SINE MIR 193 205 -57 3081 167 48 32 chr6 25317594 25318301 -157096941 - L1MA9 LINE L1 -5 6307 5590 1195 112 0 22 chr6 25318304 25318482 -157096760 - AluY SINE Alu -36 275 102 5899 176 66 27 chr6 25318482 25319993 -157095249 - L1MA9 LINE L1 -722 5590 4011 261 0 0 0 chr6 25320361 25320390 -157094852 + (CA)n Simple_repeat Simple_repeat 2 30 0 400 123 15 0 chr6 25321564 25321633 -157093609 + L1PA13 LINE L1 6081 6158 -10 5598 193 39 27 chr6 25323150 25325357 -157089885 - L1PA16 LINE L1 -16 6150 3932 2221 42 7 14 chr6 25325399 25325683 -157089559 - L1PA5 LINE L1 -7 6147 5866 5512 53 16 0 chr6 25325683 25326872 -157088370 + L1PA5 LINE L1 4663 5864 -290 919 204 0 0 chr6 25327647 25327814 -157087428 + MER3 DNA MER1_type 43 209 0 240 178 123 55 chr6 25327837 25327910 -157087332 - L1MC4 LINE L1 -415 7627 7550 2168 103 3 13 chr6 25328311 25328613 -157086629 + AluSx SINE Alu 14 312 0 323 220 99 0 chr6 25328938 25329029 -157086213 + L1MB7 LINE L1 6073 6172 -12 2054 113 7 0 chr6 25329136 25329420 -157085822 + AluSp SINE Alu 1 286 -27 1580 200 60 3 chr6 25330461 25330811 -157084431 - L1MB4 LINE L1 -15 6165 5796 1656 175 17 3 chr6 25331579 25331870 -157083372 - AluSx SINE Alu -17 295 1 296 82 0 0 chr6 25334637 25334686 -157080556 + Charlie5 DNA MER1_type 2438 2486 -126 1901 99 4 0 chr6 25334771 25335024 -157080218 - AluSg SINE Alu -14 296 43 27 0 0 0 chr6 25335256 25335283 -157079959 + AT_rich Low_complexity Low_complexity 1 27 0 312 280 9 19 chr6 25335356 25335463 -157079779 - L1MC4 LINE L1 -1323 6719 6614 * 315 272 0 22 chr6 25335373 25335465 -157079777 + L1MC4 LINE L1 6614 6703 -1339 996 214 97 13 chr6 25336258 25336557 -157078685 + MER33 DNA MER1_type 1 324 0 389 271 60 12 chr6 25336687 25336853 -157078389 + L1ME LINE L1 5525 5698 -423 23 0 0 0 chr6 25337523 25337546 -157077696 + AT_rich Low_complexity Low_complexity 1 23 0 180 239 152 0 chr6 25338274 25338320 -157076922 + L2 LINE L2 3237 3289 -24 284 188 94 0 chr6 25338454 25338518 -157076724 - L1ME1 LINE L1 -21 6145 6076 * 1840 265 83 24 chr6 25338517 25339678 -157075564 - L1MEc LINE L1 -3135 3080 1874 304 263 32 21 chr6 25339712 25339807 -157075435 - L1ME1 LINE L1 -31 6135 6040 1406 225 48 93 chr6 25339862 25340378 -157074864 + MLT2B1 LTR ERVL 18 510 -10 1512 274 16 42 chr6 25340382 25340795 -157074447 - L1ME1 LINE L1 -187 5979 5580 2149 108 0 3 chr6 25340795 25341091 -157074151 + AluSx SINE Alu 1 295 -17 1512 274 16 42 chr6 25341091 25341180 -157074062 - L1ME1 LINE L1 -586 5580 5490 770 310 73 20 chr6 25341190 25341823 -157073419 - L1MEc LINE L1 -5232 1164 499 272 287 9 43 chr6 25341970 25342085 -157073157 - L1MEc LINE L1 -6241 155 45 24 0 0 0 chr6 25344210 25344234 -157071008 + AT_rich Low_complexity Low_complexity 1 24 0 282 359 56 34 chr6 25344247 25344481 -157070761 - MIR SINE MIR -16 246 8 21669 31 6 0 chr6 25344798 25348196 -157067046 + L1PA3 LINE L1 2751 6154 -1 237 230 23 23 chr6 25348909 25348996 -157066246 + (CATA)n Simple_repeat Simple_repeat 2 88 0 316 249 2 10 chr6 25349033 25349130 -157066112 + L1MC4 LINE L1 7904 7992 -3 388 296 97 36 chr6 25350447 25350643 -157064599 + MIR SINE MIR 20 227 -35 215 341 95 16 chr6 25353676 25353802 -157061440 + L2 LINE L2 3122 3257 -15 268 154 0 0 chr6 25354432 25354484 -157060758 + L1MCc LINE L1 1417 1468 -4955 2226 79 27 3 chr6 25354636 25354928 -157060314 + AluY SINE Alu 4 302 -9 1029 286 123 7 chr6 25354964 25355418 -157059824 + L1ME3A LINE L1 5627 6133 -37 25 0 0 0 chr6 25355439 25355464 -157059778 + AT_rich Low_complexity Low_complexity 1 25 0 667 203 8 0 chr6 25357126 25357249 -157057993 - FLAM_C SINE Alu -12 131 8 337 351 80 0 chr6 25357450 25357638 -157057604 + MIR SINE MIR 48 250 -12 524 381 53 32 chr6 25357815 25358339 -157056903 + L2 LINE L2 2506 3221 -51 311 308 22 11 chr6 25358470 25358561 -157056681 + L2 LINE L2 3202 3293 -20 186 133 0 0 chr6 25359217 25359247 -157055995 + (T)n Simple_repeat Simple_repeat 1 30 0 240 340 28 57 chr6 25359892 25360033 -157055209 - MIR3 SINE MIR -52 156 20 307 274 141 43 chr6 25360851 25361085 -157054157 + MIR SINE MIR 6 262 0 * 344 372 73 38 chr6 25361063 25361404 -157053838 - L3 LINE CR1 -7 1570 1218 8821 115 73 3 chr6 25361722 25363954 -157051288 + L1PA10 LINE L1 3765 6159 -9 246 273 68 61 chr6 25365471 25365603 -157049639 - MIR SINE MIR -123 139 7 216 0 0 0 chr6 25365744 25365768 -157049474 + (A)n Simple_repeat Simple_repeat 1 24 0 195 42 0 0 chr6 25366562 25366586 -157048656 + (T)n Simple_repeat Simple_repeat 1 24 0 7450 22 0 0 chr6 25366742 25367609 -157047633 + L1PA3 LINE L1 5286 6152 -3 312 284 23 0 chr6 25369493 25369581 -157045661 + L1MC4 LINE L1 6614 6703 -1339 * 335 301 0 0 chr6 25369522 25369615 -157045627 - L1MC4 LINE L1 -1336 6706 6614 * 345 227 0 62 chr6 25369596 25369693 -157045549 + L1MC4 LINE L1 6613 6703 -1339 307 264 0 66 chr6 25369662 25369768 -157045474 - L1MC4 LINE L1 -1336 6706 6608 * 354 242 0 42 chr6 25369766 25369861 -157045381 + L1MC4 LINE L1 6613 6703 -1339 345 227 0 62 chr6 25369866 25369963 -157045279 + L1MC4 LINE L1 6613 6703 -1339 345 227 0 62 chr6 25369968 25370065 -157045177 + L1MC4 LINE L1 6613 6703 -1339 308 238 0 79 chr6 25370068 25370169 -157045073 - L1MC4 LINE L1 -1336 6706 6614 363 194 0 0 chr6 25370174 25370277 -157044965 + (TA)n Simple_repeat Simple_repeat 1 103 0 229 59 0 20 chr6 25370277 25370328 -157044914 - LTR66 LTR ERVL -166 444 395 312 287 108 54 chr6 25370363 25370530 -157044712 + MIR3 SINE MIR 32 207 -1 267 242 106 53 chr6 25372052 25372184 -157043058 + LTR67 LTR ERVL 347 485 -72 41796 39 23 3 chr6 25372196 25378224 -157037018 + L1PA3 LINE L1 1 6155 0 2812 78 3 5 chr6 25378225 25378611 -157036631 + L1PA7 LINE L1 5769 6153 -1 23 54 0 0 chr6 25379077 25379114 -157036128 + AT_rich Low_complexity Low_complexity 1 37 0 260 348 25 29 chr6 25379246 25379450 -157035792 - L3 LINE CR1 -465 1112 910 1407 201 0 82 chr6 25379450 25379779 -157035463 + AluJb SINE Alu 1 302 0 1495 277 89 37 chr6 25379822 25380282 -157034960 + L1MEc LINE L1 284 719 -5677 1600 149 133 104 chr6 25380282 25380733 -157034509 - MLT1C LTR MaLR 0 467 4 1495 277 89 37 chr6 25380733 25381528 -157033714 + L1MEc LINE L1 719 1472 -4924 2161 113 0 7 chr6 25381528 25381830 -157033412 + AluSg SINE Alu 1 300 -10 1495 277 89 37 chr6 25381830 25382325 -157032917 + L1MEc LINE L1 1472 2243 -4153 * 6550 66 6 1 chr6 25382312 25383151 -157032091 - L1P LINE L1 -1848 4298 3456 2277 239 79 16 chr6 25383804 25384613 -157030629 - L1M4 LINE L1 -3159 2987 2128 7239 37 7 0 chr6 25384637 25385968 -157029274 - L1PA4 LINE L1 -1 6154 4814 * 23584 53 4 3 chr6 25385963 25389773 -157025469 + L1PA5 LINE L1 2343 6153 -1 1831 164 0 10 chr6 25390252 25390563 -157024679 + AluJb SINE Alu 2 309 -3 325 236 170 0 chr6 25390579 25390791 -157024451 + L1ME LINE L1 5561 5808 -313 220 137 39 0 chr6 25390851 25390902 -157024340 + (CA)n Simple_repeat Simple_repeat 2 54 0 1907 198 8 6 chr6 25390909 25391273 -157023969 - MLT1A1 LTR MaLR 0 365 1 414 237 179 6 chr6 25392840 25392946 -157022296 - LTR50 LTR ERVL 0 795 709 180 0 0 0 chr6 25392946 25392966 -157022276 + (CTA)n Simple_repeat Simple_repeat 1 20 0 414 237 179 6 chr6 25392966 25393032 -157022210 - LTR50 LTR ERVL -86 709 593 1258 216 56 44 chr6 25393564 25393977 -157021265 - LTR52 LTR ERVL -3 418 1 255 31 0 0 chr6 25394211 25394243 -157020999 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 303 114 59 chr6 25394560 25394623 -157020619 - HAL1b LINE L1 -439 909 851 723 85 101 47 chr6 25394623 25394752 -157020490 + MER85 DNA T2_type 3 138 -1 266 303 114 59 chr6 25394752 25395283 -157019959 - HAL1b LINE L1 -497 851 282 23 68 0 0 chr6 25396146 25396190 -157019052 + AT_rich Low_complexity Low_complexity 1 44 0 3348 194 84 10 chr6 25396190 25397101 -157018141 - L1MB7 LINE L1 -8 6674 5695 1028 136 26 0 chr6 25397105 25397260 -157017982 - AluSg/x SINE Alu -17 295 137 3470 226 51 24 chr6 25397260 25398366 -157016876 - L1MB7 LINE L1 -945 5699 4565 393 274 86 12 chr6 25398345 25398600 -157016642 - L1MB7 LINE L1 -4031 2615 2342 * 1292 260 71 11 chr6 25398690 25399140 -157016102 - L1MB7 LINE L1 -4538 2108 1632 2592 228 51 23 chr6 25399162 25399887 -157015355 - L1MB7 LINE L1 -4985 1557 813 268 286 57 23 chr6 25399892 25400067 -157015175 - L1MEd LINE L1 -5041 1078 898 408 262 152 8 chr6 25400282 25400538 -157014704 + L1ME4a LINE L1 5585 5877 -244 34 24 0 0 chr6 25402139 25402180 -157013062 + AT_rich Low_complexity Low_complexity 1 41 0 419 50 119 0 chr6 25402180 25402339 -157012903 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 0 0 0 chr6 25402339 25402360 -157012882 + AT_rich Low_complexity Low_complexity 1 21 0 458 359 36 28 chr6 25402918 25403311 -157011931 + MERVL LTR ERVL 4720 5115 -370 319 272 89 57 chr6 25403433 25403591 -157011651 + MERVL LTR ERVL 5173 5335 -319 387 299 107 0 chr6 25403660 25403837 -157011405 - L1ME LINE L1 -305 5816 5621 936 57 81 0 chr6 25404011 25404135 -157011107 - MER85 DNA T2_type 0 139 6 196 132 0 26 chr6 25404568 25404606 -157010636 + L2 LINE L2 3272 3308 -5 1868 175 105 33 chr6 25405335 25405792 -157009450 + LTR2B LTR ERV1 1 490 0 403 250 35 49 chr6 25405966 25406110 -157009132 - ERVL LTR ERVL -5061 703 562 43 56 0 0 chr6 25406978 25407049 -157008193 + AT_rich Low_complexity Low_complexity 1 71 0 429 236 19 143 chr6 25407225 25407484 -157007758 - L2 LINE L2 -2 3311 3085 1508 58 0 0 chr6 25407598 25407788 -157007454 - L1PA5 LINE L1 0 6154 5965 344 390 22 16 chr6 25407871 25408053 -157007189 + L1MEc LINE L1 268 450 -5946 2111 105 3 22 chr6 25408150 25408465 -157006777 + AluSc SINE Alu 1 309 0 194 306 159 45 chr6 25411399 25411556 -157003686 - MIR SINE MIR -80 182 8 304 362 58 11 chr6 25411737 25411911 -157003331 - MIR3 SINE MIR -9 199 18 2857 3 0 0 chr6 25412304 25412615 -157002627 - AluYa5 SINE Alu 0 311 1 222 37 0 0 chr6 25412963 25412990 -157002252 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr6 25413214 25413237 -157002005 + AT_rich Low_complexity Low_complexity 1 23 0 239 275 115 69 chr6 25413386 25413822 -157001420 + L1ME4a LINE L1 5584 6039 -82 6455 87 22 22 chr6 25413826 25414991 -157000251 - L1PA8 LINE L1 -7 6165 4993 6103 91 11 1 chr6 25414991 25415862 -156999380 + L1PA8 LINE L1 4098 4977 -1169 244 271 263 0 chr6 25416029 25416162 -156999080 - MIR SINE MIR -29 233 66 194 330 51 8 chr6 25416288 25416406 -156998836 - L2 LINE L2 -63 3250 3128 236 189 33 44 chr6 25416410 25416500 -156998742 + (CTATA)n Simple_repeat Simple_repeat 1 89 0 478 68 68 0 chr6 25416513 25416631 -156998611 + (TA)n Simple_repeat Simple_repeat 1 126 0 384 321 46 51 chr6 25416633 25416829 -156998413 + MIR SINE MIR 20 214 -48 21 36 0 0 chr6 25417730 25417758 -156997484 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr6 25417833 25417871 -156997371 + AT_rich Low_complexity Low_complexity 1 38 0 299 275 0 0 chr6 25420947 25421027 -156994215 + L1M1 LINE L1 3539 3618 -3947 226 297 14 0 chr6 25421624 25421698 -156993544 + MIR SINE MIR 21 95 -167 563 100 12 0 chr6 25423584 25423664 -156991578 + AluSc SINE Alu 4 84 -225 1070 175 37 30 chr6 25423674 25424388 -156990854 + SVA Other Other 434 703 -683 1644 104 0 0 chr6 25424508 25424719 -156990523 + AluSc SINE Alu 73 283 -26 402 261 88 106 chr6 25425618 25425947 -156989295 - L2 LINE L2 0 3313 2991 3135 98 28 0 chr6 25425983 25426452 -156988790 + L1PA13 LINE L1 5660 6141 -22 188 174 72 43 chr6 25426784 25426853 -156988389 + L2 LINE L2 2905 2975 -338 2095 102 28 7 chr6 25427190 25427474 -156987768 - AluSq SINE Alu -10 303 14 631 217 12 36 chr6 25428460 25428626 -156986616 + L1MDa LINE L1 21 182 -6358 1471 265 74 26 chr6 25428631 25429405 -156985837 + L1M1 LINE L1 4631 5453 -2112 2229 107 7 7 chr6 25429405 25429713 -156985529 - AluSx SINE Alu -4 308 1 1471 265 74 26 chr6 25429713 25429814 -156985428 + L1M1 LINE L1 5453 5548 -2017 1078 129 10 10 chr6 25429825 25430018 -156985224 + L1PB1 LINE L1 3 195 -6668 12492 194 46 12 chr6 25430022 25433502 -156981740 + L1PB1 LINE L1 635 4541 -2326 2278 106 0 13 chr6 25433502 25433813 -156981429 + AluSg SINE Alu 1 307 -3 12492 194 46 12 chr6 25433813 25436223 -156979019 + L1PB1 LINE L1 4541 6867 0 3146 228 73 20 chr6 25436278 25438101 -156977141 + L1MD1 LINE L1 5546 7458 -203 2358 92 0 0 chr6 25438103 25438398 -156976844 + AluSx SINE Alu 1 295 -17 27 81 0 0 chr6 25439228 25439290 -156975952 + AT_rich Low_complexity Low_complexity 1 62 0 512 284 17 0 chr6 25440056 25440232 -156975010 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 240 6 0 chr6 25440269 25440440 -156974802 + (CA)n Simple_repeat Simple_repeat 2 173 0 201 361 52 31 chr6 25440470 25440661 -156974581 + L2 LINE L2 2551 2745 -569 1872 126 11 3 chr6 25440664 25440950 -156974292 + L1PA15 LINE L1 5860 6147 -18 369 233 71 4 chr6 25441802 25441907 -156973335 + L1ME4a LINE L1 5493 5583 -538 186 43 0 0 chr6 25441965 25441988 -156973254 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr6 25442048 25442077 -156973165 + AT_rich Low_complexity Low_complexity 1 29 0 344 296 61 15 chr6 25442155 25442287 -156972955 + L1ME4a LINE L1 5927 6064 -57 230 247 47 47 chr6 25444018 25444103 -156971139 + MIR SINE MIR 68 152 -56 347 0 23 0 chr6 25444551 25444594 -156970648 + (CA)n Simple_repeat Simple_repeat 2 45 0 689 185 7 15 chr6 25444680 25444815 -156970427 + AluJb SINE Alu 1 134 -178 180 0 0 0 chr6 25444837 25444857 -156970385 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 351 123 18 chr6 25445033 25445204 -156970038 + MIR3 SINE MIR 14 202 -6 194 333 29 0 chr6 25445164 25445233 -156970009 + L2 LINE L2 651 721 -2593 * 793 253 93 8 chr6 25446306 25446563 -156968679 - MLT1C LTR MaLR 0 467 189 2410 87 6 3 chr6 25446608 25446919 -156968323 - AluSx SINE Alu 0 312 1 214 400 11 11 chr6 25446937 25447032 -156968210 - MIR SINE MIR -152 110 16 249 333 0 14 chr6 25447313 25447385 -156967857 + L2 LINE L2 3151 3221 -51 314 325 84 18 chr6 25447448 25447614 -156967628 - MIR SINE MIR -35 227 51 474 294 7 0 chr6 25448483 25448629 -156966613 - MIR SINE MIR -33 229 83 243 310 10 0 chr6 25448816 25448916 -156966326 - LTR33 LTR ERVL -53 468 368 1986 135 3 52 chr6 25449118 25449444 -156965798 + AluSx SINE Alu 1 310 -2 297 284 17 52 chr6 25451421 25451537 -156963705 - MIR SINE MIR -59 203 92 604 323 65 4 chr6 25454654 25454886 -156960356 + MIR SINE MIR 3 248 -14 1108 233 37 18 chr6 25455321 25455647 -156959595 + L1M1 LINE L1 16 347 -7218 283 350 62 46 chr6 25455709 25455903 -156959339 - L2 LINE L2 -87 3185 2989 725 251 92 26 chr6 25457160 25457431 -156957811 - MER110 LTR ERV1 -37 454 166 227 198 10 109 chr6 25457507 25457608 -156957634 - MER110A LTR ERV1 -298 170 80 289 208 247 0 chr6 25458076 25458153 -156957089 + L2 LINE L2 3176 3271 -1 298 391 0 0 chr6 25458294 25458404 -156956838 - L2 LINE L2 -1 3271 3162 242 319 0 11 chr6 25458426 25458520 -156956722 + (CCA)n Simple_repeat Simple_repeat 3 95 0 184 254 104 30 chr6 25458636 25458703 -156956539 - MER5A DNA MER1_type -109 80 9 1518 222 88 49 chr6 25459618 25460104 -156955138 - MLT1D LTR MaLR 0 505 1 23 78 0 0 chr6 25460184 25460235 -156955007 + AT_rich Low_complexity Low_complexity 1 51 0 1471 173 29 0 chr6 25461832 25462144 -156953098 + L1 LINE L1 4375 4695 -1451 573 100 0 0 chr6 25462146 25462236 -156953006 - Tigger5 DNA MER2_type -182 2141 2052 471 162 51 8 chr6 25462243 25462360 -156952882 - L1MC3 LINE L1 -11 7774 7653 2213 187 29 65 chr6 25462369 25462926 -156952316 - L1MC3 LINE L1 -850 6935 6399 9725 139 47 8 chr6 25462977 25463774 -156951468 + Tigger1 DNA MER2_type 128 893 -1525 2049 126 27 7 chr6 25463774 25464075 -156951167 - AluSx SINE Alu -5 307 1 9725 139 47 8 chr6 25464075 25465050 -156950192 + Tigger1 DNA MER2_type 893 1968 -450 1243 163 19 31 chr6 25465056 25465313 -156949929 + Tigger1 DNA MER2_type 2165 2418 0 1862 169 75 73 chr6 25465326 25465975 -156949267 - L1MC3 LINE L1 -1421 6364 5661 * 2180 298 85 53 chr6 25465970 25466944 -156948298 - L1MEc LINE L1 -1459 4756 3730 3637 74 118 4 chr6 25466944 25467487 -156947755 + LTR14B LTR ERVK 4 608 0 2180 298 85 53 chr6 25467487 25467794 -156947448 - L1MEc LINE L1 -2485 3730 3434 334 252 41 14 chr6 25467801 25467948 -156947294 - L1MEc LINE L1 -3146 3069 2919 958 251 78 17 chr6 25467958 25468512 -156946730 - L1MEc LINE L1 -3504 2711 2170 1960 208 26 9 chr6 25468822 25469249 -156945993 + Tigger2a DNA MER2_type 1 434 0 192 298 0 0 chr6 25469449 25469496 -156945746 - MIR SINE MIR -120 142 96 21 36 0 0 chr6 25470310 25470338 -156944904 + AT_rich Low_complexity Low_complexity 1 28 0 226 169 108 0 chr6 25470741 25470806 -156944436 - MLT1A1 LTR MaLR 0 396 325 32 0 0 0 chr6 25470816 25470848 -156944394 + AT_rich Low_complexity Low_complexity 1 32 0 856 237 82 40 chr6 25470855 25471159 -156944083 - MLT1A1 LTR MaLR -48 317 1 238 308 112 50 chr6 25471159 25471481 -156943761 + HAL1 LINE L1 97 438 -2069 1050 213 43 5 chr6 25471510 25471971 -156943271 + MLT1E2 LTR MaLR 74 623 -3 397 208 138 138 chr6 25472378 25472705 -156942537 + HAL1 LINE L1 1075 1401 -1106 5380 109 43 37 chr6 25473927 25475557 -156939685 - L1PA10 LINE L1 -16 6152 4525 676 160 100 7 chr6 25475557 25475707 -156939535 + L1PA13 LINE L1 1973 2136 -4651 1391 57 62 0 chr6 25475829 25476021 -156939221 - L1PA4 LINE L1 -8 6147 5944 283 327 129 0 chr6 25477047 25477148 -156938094 - MIR SINE MIR -78 130 17 1002 213 253 26 chr6 25478023 25478076 -156937166 + MLT1A2 LTR MaLR 1 41 -333 3036 162 34 42 chr6 25478076 25478693 -156936549 - LTR9 LTR ERV1 0 612 1 1002 213 253 26 chr6 25478693 25478944 -156936298 + MLT1A2 LTR MaLR 41 374 0 192 97 0 0 chr6 25481069 25481100 -156934142 + (TC)n Simple_repeat Simple_repeat 1 31 0 329 244 111 76 chr6 25481182 25481354 -156933888 - MER5B DNA MER1_type 0 178 1 2438 47 0 20 chr6 25481463 25481762 -156933480 + AluY SINE Alu 1 293 -18 1118 224 65 78 chr6 25482113 25482546 -156932696 + LTR37B LTR ERV1 9 435 -33 2174 150 19 6 chr6 25482593 25482952 -156932290 - THE1B LTR MaLR 0 364 1 1780 164 10 7 chr6 25483867 25484160 -156931082 + AluSx SINE Alu 1 294 -18 402 286 72 27 chr6 25485947 25486153 -156929089 + MLT1G LTR MaLR 42 258 -332 1488 198 40 3 chr6 25486863 25487161 -156928081 + AluJo SINE Alu 1 309 -3 278 268 114 0 chr6 25487885 25488008 -156927234 - Charlie7 DNA MER1_type -2475 137 1 702 259 74 0 chr6 25488016 25488205 -156927037 + MER58A DNA MER1_type 1 203 -21 925 212 0 0 chr6 25488258 25488423 -156926819 + FAM SINE Alu 3 167 -8 270 266 106 80 chr6 25488664 25488800 -156926442 + MIR SINE MIR 3 147 -115 2150 126 0 0 chr6 25488800 25489093 -156926149 + AluSx SINE Alu 1 293 -19 270 266 106 80 chr6 25489093 25489155 -156926087 + MIR SINE MIR 147 206 -56 21 0 0 0 chr6 25489163 25489184 -156926058 + AT_rich Low_complexity Low_complexity 1 21 0 1228 244 74 65 chr6 25489494 25489954 -156925288 + MLT1C LTR MaLR 1 464 -3 204 309 0 15 chr6 25490812 25490880 -156924362 + GA-rich Low_complexity Low_complexity 2 68 0 2300 178 79 5 chr6 25492516 25492583 -156922659 - MER70B LTR ERVL -102 476 415 585 28 0 0 chr6 25492583 25492654 -156922588 + (CA)n Simple_repeat Simple_repeat 1 71 0 2300 178 79 5 chr6 25492654 25493029 -156922213 - MER70B LTR ERVL -163 415 1 357 220 69 27 chr6 25493221 25493361 -156921881 - MLT1I LTR MaLR -19 428 293 585 69 0 0 chr6 25493387 25493474 -156921768 + (CA)n Simple_repeat Simple_repeat 2 88 0 252 296 80 75 chr6 25494204 25494430 -156920812 - MIR SINE MIR -2 260 34 1508 185 109 3 chr6 25494705 25495035 -156920207 - MLT1A1 LTR MaLR 0 365 1 2230 111 0 22 chr6 25495712 25496027 -156919215 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr6 25496125 25496146 -156919096 + AT_rich Low_complexity Low_complexity 1 21 0 265 304 65 77 chr6 25496384 25496552 -156918690 - MIR SINE MIR -73 189 24 1965 121 0 65 chr6 25496781 25497103 -156918139 + AluSx SINE Alu 1 301 -11 1719 194 90 29 chr6 25497837 25497894 -156917348 - Charlie1b DNA MER1_type -2238 523 471 2161 99 0 33 chr6 25497894 25498197 -156917045 + AluSg SINE Alu 1 293 -17 1719 194 90 29 chr6 25498197 25498630 -156916612 - Charlie1b DNA MER1_type -2290 471 3 266 286 126 8 chr6 25498764 25498883 -156916359 + MIR SINE MIR 52 184 -78 607 240 0 0 chr6 25499555 25499676 -156915566 - L1ME LINE L1 -393 5777 5657 239 132 26 0 chr6 25499699 25499737 -156915505 + MER8 DNA MER2_type 3 41 -198 873 181 154 0 chr6 25499754 25499942 -156915300 + MER2 DNA MER2_type 128 344 -1 440 259 19 4 chr6 25499955 25500071 -156915171 - L1ME LINE L1 -545 5625 5512 10337 172 65 4 chr6 25500286 25502672 -156912570 + L1MA8 LINE L1 3060 5585 -727 1157 156 72 13 chr6 25502673 25503021 -156912221 - MSTA LTR MaLR 0 428 1 3704 162 29 11 chr6 25503021 25503714 -156911528 + L1MA8 LINE L1 5582 6286 -5 429 180 20 30 chr6 25503898 25503998 -156911244 + MER5A DNA MER1_type 13 111 -78 280 301 60 0 chr6 25504632 25504715 -156910527 - MER91C DNA MER1_type -15 125 38 24 0 0 0 chr6 25505451 25505475 -156909767 + AT_rich Low_complexity Low_complexity 1 24 0 827 271 75 16 chr6 25505687 25505942 -156909300 - MLT1D LTR MaLR -192 313 44 197 303 53 26 chr6 25506077 25506153 -156909089 - L2 LINE L2 -15 3257 3180 994 195 0 48 chr6 25506214 25506424 -156908818 - MLT1D LTR MaLR -305 200 1 410 200 0 0 chr6 25507222 25507302 -156907940 - L1ME LINE L1 -453 5668 5589 480 188 0 0 chr6 25507444 25507524 -156907718 + MER82 DNA MER2_type 1 80 -573 3911 227 42 4 chr6 25507710 25508733 -156906509 + L1P LINE L1 2601 3662 -2484 458 43 0 72 chr6 25509422 25509491 -156905751 + MER53 DNA DNA 2 65 -124 2036 127 0 3 chr6 25510320 25510604 -156904638 - AluSc SINE Alu -26 283 1 1206 178 35 5 chr6 25511066 25511268 -156903974 + AluJo SINE Alu 2 209 -103 447 19 0 0 chr6 25511280 25511332 -156903910 + (A)n Simple_repeat Simple_repeat 1 52 0 261 353 69 0 chr6 25512474 25512576 -156902666 + MIR3 SINE MIR 73 181 -27 368 288 63 37 chr6 25513472 25513552 -156901690 - L1ME3A LINE L1 -10 6160 6084 1160 227 174 78 chr6 25513552 25514093 -156901149 + MLT1E LTR MaLR 1 593 0 368 288 63 37 chr6 25514093 25514203 -156901039 - L1ME3A LINE L1 -86 6084 5965 710 284 64 25 chr6 25514313 25514652 -156900590 - L1ME3A LINE L1 -264 5898 5553 251 297 0 0 chr6 25515495 25515559 -156899683 - MLT1J2 LTR MaLR -120 330 267 239 226 97 40 chr6 25515736 25515860 -156899382 + L1MB1 LINE L1 3550 3680 -2466 * 3417 200 71 55 chr6 25515837 25516665 -156898577 + L1MB1 LINE L1 4150 4963 -1203 2103 4 0 0 chr6 25516665 25516891 -156898351 + AluY SINE Alu 86 311 0 3417 200 71 55 chr6 25516891 25516945 -156898297 + L1MB1 LINE L1 4963 5015 -1151 2222 123 0 0 chr6 25516945 25517255 -156897987 + AluSg SINE Alu 1 310 0 3417 200 71 55 chr6 25517255 25517308 -156897934 + L1MB1 LINE L1 5015 5066 -1100 2191 118 7 0 chr6 25517308 25517612 -156897630 + AluSg SINE Alu 1 306 -4 3417 200 71 55 chr6 25517612 25518572 -156896670 + L1MB1 LINE L1 5066 6148 -18 2187 100 3 0 chr6 25518715 25519004 -156896238 - AluSp SINE Alu -8 305 16 272 239 0 76 chr6 25520969 25521061 -156894181 + MIR SINE MIR 49 133 -75 324 256 38 53 chr6 25521468 25521601 -156893641 - MIR SINE MIR -46 216 86 452 312 29 23 chr6 25521760 25521933 -156893309 + MIR SINE MIR 56 229 -33 25 51 0 0 chr6 25522093 25522132 -156893110 + AT_rich Low_complexity Low_complexity 1 39 0 235 382 31 11 chr6 25522456 25522647 -156892595 - MIR3 SINE MIR -9 199 5 381 254 117 65 chr6 25524592 25524681 -156890561 + MIR SINE MIR 23 106 -156 1847 122 47 0 chr6 25524681 25524959 -156890283 - AluSx SINE Alu -21 291 1 381 254 117 65 chr6 25524959 25525098 -156890144 + MIR SINE MIR 106 258 -4 788 193 53 48 chr6 25525205 25525392 -156889850 - MER5A DNA MER1_type -1 188 1 182 207 241 0 chr6 25527181 25527239 -156888003 - L2 LINE L2 -19 3294 3223 342 362 69 28 chr6 25527403 25527621 -156887621 + L2 LINE L2 2860 3086 -186 212 304 116 58 chr6 25527702 25527840 -156887402 - L2 LINE L2 -10 3303 3158 288 277 198 0 chr6 25528912 25529013 -156886229 + L2 LINE L2 3188 3308 -5 375 291 55 0 chr6 25529207 25529334 -156885908 - MIR SINE MIR 0 262 129 353 310 23 47 chr6 25529794 25529819 -156885423 + MIR3 SINE MIR 50 74 -134 2202 109 21 47 chr6 25529819 25530204 -156885038 - THE1C LTR MaLR 0 375 1 353 310 23 47 chr6 25530204 25530307 -156884935 + MIR3 SINE MIR 74 175 -33 1688 71 0 9 chr6 25530880 25531090 -156884152 + AluSg/x SINE Alu 83 290 -20 487 303 17 0 chr6 25531098 25531217 -156884025 + MIR3 SINE MIR 36 156 -52 1833 217 25 60 chr6 25531887 25532403 -156882839 - MLT1D LTR MaLR -7 498 1 404 328 49 0 chr6 25532403 25532525 -156882717 + L2 LINE L2 3183 3310 -3 3411 111 25 25 chr6 25532571 25532612 -156882630 - Tigger1 DNA MER2_type -180 2238 2198 2428 61 3 13 chr6 25532612 25532924 -156882318 + AluY SINE Alu 2 310 -1 3411 111 25 25 chr6 25532924 25533432 -156881810 - Tigger1 DNA MER2_type -219 2199 1689 5561 142 18 15 chr6 25533432 25534879 -156880363 - L1PB3 LINE L1 0 6154 4751 1533 233 72 38 chr6 25534971 25535418 -156879824 - MLT1C LTR MaLR 0 467 6 194 278 0 19 chr6 25536610 25536664 -156878578 + L2 LINE L2 3218 3270 -2 6320 128 42 34 chr6 25538065 25538324 -156876918 + HSMAR2 DNA Mariner 1 256 -1046 787 188 88 0 chr6 25538324 25538484 -156876758 + FAM SINE Alu 1 174 -1 6320 128 42 34 chr6 25538484 25539329 -156875913 + HSMAR2 DNA Mariner 256 1115 -187 3362 124 6 0 chr6 25539334 25539841 -156875401 + L1PA10 LINE L1 3906 4415 -1731 4559 97 8 1 chr6 25541490 25542278 -156872964 + L1PA10 LINE L1 5100 5891 -277 30 27 0 0 chr6 25542626 25542663 -156872579 + AT_rich Low_complexity Low_complexity 1 37 0 185 116 0 47 chr6 25542835 25542878 -156872364 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 440 272 82 49 chr6 25543126 25543713 -156871529 - L1PB3 LINE L1 -2165 3981 3370 1673 184 10 26 chr6 25544390 25544699 -156870543 - AluJo SINE Alu -8 304 1 1617 130 86 51 chr6 25544716 25545008 -156870234 - AluSx SINE Alu -8 304 3 410 237 79 13 chr6 25545089 25545241 -156870001 - MER103 DNA DNA -1 165 4 250 327 53 9 chr6 25546251 25546364 -156868878 + MIR SINE MIR 133 250 -12 238 280 10 40 chr6 25546680 25546780 -156868462 - MIR SINE MIR -60 202 106 359 234 64 0 chr6 25547227 25547321 -156867921 + MER110 LTR ERV1 1 100 -391 1539 204 33 25 chr6 25547369 25547761 -156867481 + MER110 LTR ERV1 78 472 -19 452 284 104 35 chr6 25547995 25548196 -156867046 - MIR SINE MIR -26 236 22 477 252 8 65 chr6 25548414 25548537 -156866705 + L1MC/D LINE L1 5496 5614 -556 22 0 0 0 chr6 25548881 25548903 -156866339 + AT_rich Low_complexity Low_complexity 1 22 0 470 298 120 11 chr6 25549734 25549925 -156865317 - MIR SINE MIR -15 247 36 2180 99 3 0 chr6 25549962 25550285 -156864957 + AluSp SINE Alu 1 324 0 2146 89 0 17 chr6 25551372 25551663 -156863579 - AluSx SINE Alu -6 306 21 261 267 0 92 chr6 25552144 25552264 -156862978 - MARNA DNA Mariner -223 363 255 336 229 129 14 chr6 25552759 25552899 -156862343 - L1ME4a LINE L1 -2 6119 5964 665 56 0 0 chr6 25553188 25553277 -156861965 + L1PA3 LINE L1 6067 6155 0 383 0 0 21 chr6 25553334 25553382 -156861860 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 422 226 16 48 chr6 25553960 25554084 -156861158 - MER112 DNA MER1_type -8 252 133 1107 213 25 99 chr6 25554464 25554858 -156860384 - MLT1A1 LTR MaLR 0 365 1 2425 97 0 0 chr6 25556477 25556785 -156858457 + AluSx SINE Alu 1 308 -4 7332 37 0 0 chr6 25558908 25560136 -156855106 - L1PA4 LINE L1 0 6155 4926 8258 173 27 110 chr6 25560136 25562323 -156852919 + L1PB1 LINE L1 2478 4845 -1306 459 0 0 0 chr6 25562323 25562374 -156852868 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8258 173 27 110 chr6 25562374 25563458 -156851784 + L1PB1 LINE L1 4845 6017 -134 589 101 0 0 chr6 25563458 25563547 -156851695 + Alu SINE Alu 222 310 0 8258 173 27 110 chr6 25563547 25563842 -156851400 + L1PB1 LINE L1 6017 5770 -381 270 0 0 0 chr6 25563842 25563872 -156851370 + (CA)n Simple_repeat Simple_repeat 2 31 0 8258 173 27 110 chr6 25563872 25564171 -156851071 + L1PB1 LINE L1 5769 6091 -60 1071 248 0 7 chr6 25564175 25564474 -156850768 + L1P LINE L1 4862 5158 -988 290 93 19 0 chr6 25564495 25564549 -156850693 + L1PB2 LINE L1 6097 6151 0 32 0 0 0 chr6 25564549 25564581 -156850661 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr6 25564618 25564674 -156850568 + AT_rich Low_complexity Low_complexity 1 56 0 2410 100 31 19 chr6 25564815 25565175 -156850067 - THE1B LTR MaLR 0 364 1 578 139 20 8 chr6 25565241 25565362 -156849880 + L1MB8 LINE L1 5833 5955 -213 2448 140 74 0 chr6 25565378 25565785 -156849457 + Tigger2 DNA MER2_type 2280 2716 -2 988 164 11 98 chr6 25565788 25566063 -156849179 + L1MB8 LINE L1 5923 6173 -5 22 0 0 0 chr6 25567063 25567085 -156848157 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr6 25568926 25568951 -156846291 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr6 25568992 25569044 -156846198 + (TTTTA)n Simple_repeat Simple_repeat 1 52 0 1631 186 18 4 chr6 25569045 25569320 -156845922 - AluJo SINE Alu -33 279 1 232 183 14 14 chr6 25569345 25569416 -156845826 + L1ME4a LINE L1 6029 6099 -22 187 358 53 0 chr6 25569872 25569967 -156845275 + MIR SINE MIR 45 144 -64 2066 160 92 2 chr6 25573210 25573603 -156841639 - MSTB1 LTR MaLR 0 432 5 250 326 34 0 chr6 25573683 25573772 -156841470 - MIR SINE MIR -4 258 167 549 304 91 32 chr6 25573828 25574048 -156841194 + MER115 DNA AcHobo 19 251 -442 28 61 0 0 chr6 25574309 25574358 -156840884 + AT_rich Low_complexity Low_complexity 1 49 0 794 192 113 35 chr6 25575097 25575300 -156839942 + MER20 DNA MER1_type 1 219 0 255 238 30 15 chr6 25575570 25575654 -156839588 - MIR SINE MIR -62 146 64 203 330 124 41 chr6 25576619 25576716 -156838526 - L3 LINE CR1 -69 1508 1404 2282 118 41 8 chr6 25579286 25579649 -156835593 + THE1C LTR MaLR 1 375 0 742 136 40 96 chr6 25579888 25580087 -156835155 + MER53 DNA DNA 2 189 0 2271 183 25 13 chr6 25580745 25581216 -156834026 + L1MB4 LINE L1 5587 6063 -117 2174 136 19 27 chr6 25581911 25582278 -156832964 + THE1B LTR MaLR 1 364 0 364 312 127 9 chr6 25582313 25582534 -156832708 - MIR SINE MIR -14 248 2 348 348 33 16 chr6 25582582 25582766 -156832476 - MIR SINE MIR -56 206 20 320 194 111 37 chr6 25582856 25582964 -156832278 + MER94 DNA DNA 1 116 -18 1267 88 0 0 chr6 25583068 25583227 -156832015 - AluY SINE Alu -6 305 147 366 348 33 16 chr6 25583780 25583964 -156831278 - MIR SINE MIR -56 206 20 320 194 111 37 chr6 25584054 25584162 -156831080 + MER94 DNA DNA 1 116 -18 2244 108 0 7 chr6 25584266 25584573 -156830669 - AluY SINE Alu -6 305 1 1338 62 6 0 chr6 25584573 25584752 -156830490 - L1P3 LINE L1 -681 5491 5312 4482 63 9 0 chr6 25584752 25585323 -156829919 + L1PA7 LINE L1 5569 6147 -7 1819 182 0 10 chr6 25585520 25585827 -156829415 - AluJb SINE Alu -8 304 1 810 205 48 0 chr6 25585833 25585999 -156829243 + MER58B DNA MER1_type 168 341 0 218 287 69 11 chr6 25586222 25586309 -156828933 + MIR SINE MIR 170 261 -1 513 345 64 16 chr6 25587879 25588128 -156827114 - MIR SINE MIR 0 262 2 230 326 163 0 chr6 25588417 25588509 -156826733 - MIR SINE MIR -109 153 47 215 225 0 0 chr6 25589543 25589583 -156825659 + (CA)n Simple_repeat Simple_repeat 1 40 0 253 319 0 0 chr6 25590218 25590290 -156824952 - L2 LINE L2 0 3272 3201 283 167 14 14 chr6 25591080 25591152 -156824090 + CT-rich Low_complexity Low_complexity 4 75 0 186 299 78 13 chr6 25591156 25591233 -156824009 - L2 LINE L2 -5 3308 3227 2028 130 16 41 chr6 25593014 25593382 -156821860 + THE1B LTR MaLR 4 362 -2 1964 96 48 7 chr6 25593783 25594073 -156821169 + AluSq SINE Alu 3 303 0 240 310 38 28 chr6 25594076 25594289 -156820953 + HAL1b LINE L1 76 290 -1058 1880 129 59 0 chr6 25594455 25594742 -156820500 + AluSx SINE Alu 1 304 -8 340 302 36 14 chr6 25594838 25594977 -156820265 + L1M4 LINE L1 2923 3064 -3082 305 278 60 60 chr6 25595362 25595513 -156819729 + L1M4 LINE L1 4894 5044 -1102 242 192 0 55 chr6 25596503 25596576 -156818666 + CT-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr6 25596980 25597001 -156818241 + AT_rich Low_complexity Low_complexity 1 21 0 527 218 20 0 chr6 25598637 25598738 -156816504 - AluJb SINE Alu -90 222 120 1070 48 5 53 chr6 25598738 25598927 -156816315 + (TTC)n Simple_repeat Simple_repeat 1 180 0 510 112 25 37 chr6 25598929 25599090 -156816152 + CT-rich Low_complexity Low_complexity 1 159 0 261 127 16 32 chr6 25599313 25599376 -156815866 + (TA)n Simple_repeat Simple_repeat 1 62 0 236 246 0 41 chr6 25599382 25599504 -156815738 + L1MC4 LINE L1 1995 6983 -1339 341 273 23 0 chr6 25599524 25599612 -156815630 + L1MC4 LINE L1 6614 6703 -1339 231 247 47 0 chr6 25599621 25599706 -156815536 + L1MC4 LINE L1 6615 6703 -1339 225 253 72 0 chr6 25599650 25599733 -156815509 - L1MC4 LINE L1 -1339 6703 6615 * 296 143 18 0 chr6 25599738 25599794 -156815448 + (TA)n Simple_repeat Simple_repeat 1 57 0 241 261 11 33 chr6 25599796 25599888 -156815354 + L1MC4 LINE L1 6614 6703 -1339 249 244 11 22 chr6 25599892 25599982 -156815260 + L1MC4 LINE L1 6614 6702 -1340 225 154 0 0 chr6 25599986 25600025 -156815217 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr6 25600054 25600082 -156815160 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 25600102 25600131 -156815111 + AT_rich Low_complexity Low_complexity 1 29 0 569 281 72 18 chr6 25600246 25600473 -156814769 - MIR SINE MIR -2 260 20 472 251 60 65 chr6 25601150 25601536 -156813706 + L1MC5 LINE L1 7552 7935 -26 895 223 27 5 chr6 25601949 25602137 -156813105 - MIR SINE MIR -56 206 15 757 188 91 34 chr6 25602138 25602314 -156812928 + MLT2B3 LTR ERVL 1 186 -368 723 58 0 33 chr6 25602314 25602435 -156812807 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 1931 123 21 7 chr6 25602535 25602819 -156812423 - AluSq SINE Alu -25 288 1 3789 196 85 18 chr6 25602819 25603484 -156811758 - L1P LINE L1 -784 5362 4620 2593 62 0 0 chr6 25603484 25603791 -156811451 + AluY SINE Alu 1 307 -4 3789 196 85 18 chr6 25603791 25604017 -156811225 - L1P LINE L1 -1526 4620 4411 237 33 0 0 chr6 25604529 25604559 -156810683 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 270 22 0 chr6 25604632 25604721 -156810521 + MIR SINE MIR 172 262 0 291 336 90 0 chr6 25604855 25604977 -156810265 - MIR SINE MIR -89 173 41 181 284 12 49 chr6 25605062 25605143 -156810099 - L2 LINE L2 -181 3091 3014 195 294 92 55 chr6 25605285 25605394 -156809848 - L2 LINE L2 -1 3312 3200 1169 207 46 65 chr6 25605505 25605877 -156809365 + MLT1A1 LTR MaLR 1 365 0 512 286 49 27 chr6 25606526 25606711 -156808531 - MIR SINE MIR -44 218 30 239 290 0 16 chr6 25606780 25606850 -156808392 + MIR SINE MIR 41 108 -103 1353 28 22 22 chr6 25607675 25607712 -156807530 + (TTC)n Simple_repeat Simple_repeat 1 394 0 1353 28 22 22 chr6 25607712 25608069 -156807173 + (TTC)n Simple_repeat Simple_repeat 1 357 0 727 153 8 0 chr6 25608114 25608232 -156807010 - FLAM_C SINE Alu -19 124 6 603 270 83 24 chr6 25608338 25608746 -156806496 - L1ME LINE L1 -590 5506 5080 579 291 162 11 chr6 25608761 25609194 -156806048 - L1ME LINE L1 -1038 5042 4545 347 271 14 19 chr6 25609207 25609414 -156805828 - L1MDb LINE L1 -5103 967 761 330 365 28 86 chr6 25609987 25610084 -156805158 - L1MDb LINE L1 -5608 462 361 2299 122 16 24 chr6 25610084 25610461 -156804781 - THE1C LTR MaLR 0 375 2 330 365 28 86 chr6 25610461 25610689 -156804553 - L1MDb LINE L1 -5709 361 156 186 393 0 17 chr6 25610737 25610854 -156804388 - MIR3 SINE MIR -6 202 88 504 303 142 31 chr6 25611588 25611912 -156803330 + MLT1J2 LTR MaLR 1 360 -90 1136 279 81 29 chr6 25611942 25612173 -156803069 - L1M4 LINE L1 -1793 4353 4136 2268 86 10 3 chr6 25612173 25612476 -156802766 - AluSc SINE Alu -4 305 1 1136 279 81 29 chr6 25612476 25612797 -156802445 - L1M4 LINE L1 -2010 4136 3772 826 102 60 6 chr6 25612824 25612991 -156802251 - L1MA7 LINE L1 0 6291 6116 905 116 129 0 chr6 25613022 25613169 -156802073 - LTR18B LTR ERVL -6 608 443 1052 62 0 8 chr6 25613206 25613335 -156801907 - AluSp/q SINE Alu -30 283 156 2000 128 89 78 chr6 25613337 25613784 -156801458 - LTR18B LTR ERVL -162 452 1 4001 153 51 77 chr6 25613784 25615349 -156799893 - L1MA7 LINE L1 -173 6118 4595 857 120 12 36 chr6 25615339 25615413 -156799829 - L1 LINE L1 -1358 4788 4715 * 16495 165 39 9 chr6 25615413 25621797 -156793445 - L1PA16 LINE L1 -302 6580 1 266 164 49 16 chr6 25621806 25621867 -156793375 - L1MA7 LINE L1 -112 6179 6117 806 284 107 16 chr6 25621880 25622500 -156792742 - L1M4 LINE L1 -2502 3644 2956 208 297 161 17 chr6 25624303 25624421 -156790821 - MIR SINE MIR -40 222 88 23 0 8 0 chr6 25624571 25624631 -156790611 + AT_rich Low_complexity Low_complexity 1 23 0 7564 15 0 0 chr6 25624683 25625550 -156789692 - L1PA2 LINE L1 -2 6153 5287 335 333 64 40 chr6 25625604 25625853 -156789389 - L1MC4 LINE L1 -141 7901 7647 520 325 177 20 chr6 25625857 25626162 -156789080 - L2 LINE L2 -41 3272 2920 819 201 49 22 chr6 25627076 25627260 -156787982 - MER5A DNA MER1_type 0 189 1 3484 117 13 19 chr6 25628301 25628831 -156786411 + MER1A DNA MER1_type 1 527 0 2241 94 7 10 chr6 25628871 25629178 -156786064 + AluY SINE Alu 3 308 -3 568 254 48 0 chr6 25629454 25629619 -156785623 + MER112 DNA MER1_type 81 253 -7 422 297 128 0 chr6 25630478 25630675 -156784567 - MIR SINE MIR 0 262 41 279 79 0 0 chr6 25631517 25631555 -156783687 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1489 163 30 54 chr6 25631581 25631913 -156783329 + MLT2B3 LTR ERVL 223 546 -8 2111 86 4 7 chr6 25632291 25632569 -156782673 + AluSq SINE Alu 37 313 0 1854 243 34 11 chr6 25635171 25635789 -156779453 + L1M4 LINE L1 4215 4846 -1300 203 357 42 14 chr6 25635815 25635958 -156779284 - L3b LINE CR1 -173 1410 1264 268 345 12 0 chr6 25635992 25636076 -156779166 - MIR3 SINE MIR -46 162 78 198 0 0 0 chr6 25636103 25636125 -156779117 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 4493 133 16 29 chr6 25636220 25637010 -156778232 - L1MA5 LINE L1 -6 6294 5515 198 0 0 0 chr6 25637297 25637319 -156777923 + (A)n Simple_repeat Simple_repeat 1 22 0 5872 61 9 0 chr6 25637354 25638104 -156777138 - L1PA8 LINE L1 -3 6169 5413 709 354 100 31 chr6 25638464 25639391 -156775851 - L2 LINE L2 -58 3255 2255 566 335 131 44 chr6 25639496 25639575 -156775667 + L3 LINE CR1 62 133 -1444 2253 109 7 0 chr6 25639575 25639879 -156775363 + AluSc SINE Alu 1 306 -3 566 335 131 44 chr6 25639879 25640256 -156774986 + L3 LINE CR1 133 558 -1019 473 176 5 186 chr6 25640302 25640512 -156774730 + MER20 DNA MER1_type 43 214 -5 216 333 0 0 chr6 25640747 25640810 -156774432 + MIR3 SINE MIR 101 163 -45 1356 241 126 28 chr6 25640813 25641273 -156773969 + MLT1D LTR MaLR 1 505 0 4111 217 27 80 chr6 25641273 25641376 -156773866 + MLT1D-int LTR MaLR 1 108 -1263 942 230 178 43 chr6 25641376 25641820 -156773422 + MLT1D LTR MaLR 1 504 -1 4111 217 27 80 chr6 25641820 25643118 -156772124 + MLT1D-int LTR MaLR 108 1217 -154 863 199 124 42 chr6 25643124 25643430 -156771812 + MLT1C LTR MaLR 135 465 -2 943 292 147 48 chr6 25643478 25644105 -156771137 + L3 LINE CR1 887 1575 -2 791 199 0 0 chr6 25644894 25645040 -156770202 + AluJb SINE Alu 1 146 -166 180 0 0 0 chr6 25645104 25645124 -156770118 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 2061 141 7 10 chr6 25645611 25645915 -156769327 + AluSx SINE Alu 1 303 -9 1965 150 0 3 chr6 25646463 25646769 -156768473 + AluJb SINE Alu 1 305 -7 926 227 12 16 chr6 25646950 25647201 -156768041 + MER76 LTR ERV 1 250 -438 906 228 25 40 chr6 25647269 25647545 -156767697 + MER76 LTR ERV 384 655 -33 332 359 61 0 chr6 25648181 25648312 -156766930 - MIR SINE MIR -111 151 13 11961 183 15 36 chr6 25648418 25648469 -156766773 - L1PB3 LINE L1 -313 5841 5790 315 0 0 0 chr6 25648469 25648504 -156766738 + (TG)n Simple_repeat Simple_repeat 2 36 0 11961 183 15 36 chr6 25648504 25649545 -156765697 - L1PB3 LINE L1 -364 5790 4728 279 78 98 0 chr6 25649545 25649596 -156765646 + MADE1 DNA Mariner 1 56 -24 11961 183 15 36 chr6 25649596 25650396 -156764846 - L1PB3 LINE L1 -1426 4728 3912 2425 87 0 0 chr6 25650396 25650707 -156764535 - AluY SINE Alu 0 311 1 11961 183 15 36 chr6 25650707 25652370 -156762872 - L1PB3 LINE L1 -2242 3912 2313 258 32 0 0 chr6 25652432 25652463 -156762779 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr6 25653632 25653657 -156761585 + (A)n Simple_repeat Simple_repeat 1 25 0 2596 50 0 0 chr6 25653657 25653957 -156761285 + AluY SINE Alu 1 300 -11 839 251 0 0 chr6 25654578 25654749 -156760493 + MER45A DNA AcHobo 1 171 -7 509 236 149 9 chr6 25654860 25655171 -156760071 + MLT1I LTR MaLR 1 409 0 2265 85 4 0 chr6 25656472 25656776 -156758466 + AluSx SINE Alu 3 307 0 193 212 0 0 chr6 25657283 25657316 -156757926 + MIR SINE MIR 1 33 -229 1854 126 32 0 chr6 25657319 25657621 -156757621 + AluSp SINE Alu 1 311 0 42488 35 0 2 chr6 25657778 25663937 -156751305 + L1PA3 LINE L1 6 6152 -3 182 37 37 0 chr6 25665268 25665295 -156749947 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 294 357 91 66 chr6 25665359 25665768 -156749474 - L2 LINE L2 -50 3222 2804 1808 144 0 11 chr6 25666107 25666417 -156748825 + AluSx SINE Alu 1 307 0 1980 202 26 32 chr6 25667233 25667699 -156747543 + MLT1C LTR MaLR 5 467 0 1870 117 8 11 chr6 25667988 25668253 -156746989 + AluSx SINE Alu 39 302 -10 206 213 43 0 chr6 25668368 25668415 -156746827 + GA-rich Low_complexity Low_complexity 4 52 0 209 305 170 7 chr6 25668866 25669007 -156746235 - MIR3 SINE MIR -6 202 39 4856 123 6 36 chr6 25669023 25669287 -156745955 - L1PA16 LINE L1 -1 6165 5895 1977 127 18 3 chr6 25669287 25669570 -156745672 + AluSx SINE Alu 1 287 -25 4856 123 6 36 chr6 25669570 25670137 -156745105 - L1PA16 LINE L1 -271 5895 5359 2213 121 0 31 chr6 25670137 25670459 -156744783 - AluSx SINE Alu 0 312 1 751 247 30 46 chr6 25670511 25670774 -156744468 + MIR SINE MIR 2 260 -2 984 161 0 29 chr6 25672355 25672529 -156742713 - AluJo SINE Alu -43 269 101 392 276 98 37 chr6 25672620 25672783 -156742459 + MIR3 SINE MIR 23 195 -13 199 381 83 32 chr6 25674192 25674470 -156740772 - L3 LINE CR1 -23 1554 1263 759 242 113 17 chr6 25674911 25675142 -156740100 - MIR SINE MIR 0 262 10 264 30 0 0 chr6 25675211 25675244 -156739998 + (CA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr6 25675549 25675585 -156739657 + (TG)n Simple_repeat Simple_repeat 2 37 0 396 300 102 55 chr6 25675872 25676326 -156738916 + HAL1 LINE L1 813 1351 -1156 1713 145 18 4 chr6 25676327 25676603 -156738639 + AluSx SINE Alu 1 280 -32 966 101 48 4 chr6 25676630 25676878 -156738364 + GA-rich Low_complexity Low_complexity 1 258 0 279 293 93 27 chr6 25676878 25677028 -156738214 + HAL1 LINE L1 1337 1496 -1011 1920 161 44 20 chr6 25677152 25677542 -156737700 + L1PA7 LINE L1 5756 6154 0 2086 146 41 33 chr6 25677916 25678278 -156736964 - MLT1A1 LTR MaLR 0 365 1 307 257 134 32 chr6 25678404 25678455 -156736787 + HAL1 LINE L1 2224 2268 -239 1960 126 13 33 chr6 25678455 25678756 -156736486 + AluJb SINE Alu 1 295 -17 307 257 134 32 chr6 25678756 25678891 -156736351 + HAL1 LINE L1 2268 2429 -78 234 288 106 0 chr6 25679065 25679131 -156736111 - L2 LINE L2 -219 3053 2981 355 306 6 38 chr6 25679197 25679357 -156735885 - L2 LINE L2 -290 2982 2828 520 301 109 18 chr6 25680532 25680761 -156734481 - MIR SINE MIR -1 261 12 2344 109 0 0 chr6 25680886 25681190 -156734052 + AluSg SINE Alu 1 304 -6 2003 164 3 0 chr6 25681584 25681883 -156733359 + AluSx SINE Alu 1 300 -12 837 286 51 26 chr6 25681907 25682257 -156732985 + MLT1J1 LTR MaLR 59 417 -29 2179 116 3 3 chr6 25682464 25682766 -156732476 + AluSx SINE Alu 1 302 -10 1923 141 0 3 chr6 25683117 25683407 -156731835 - AluSq SINE Alu -24 289 1 627 242 68 55 chr6 25683701 25684081 -156731161 + L1MC4a LINE L1 833 1217 -4902 231 225 127 0 chr6 25684174 25684245 -156730997 + L1MC4a LINE L1 2194 2273 -3856 1221 299 76 91 chr6 25684340 25685609 -156729633 - ERVL LTR ERVL -3122 2642 1393 647 340 18 14 chr6 25685664 25685943 -156729299 - ERVL LTR ERVL -3799 1197 918 487 166 183 145 chr6 25686464 25686699 -156728543 + MER4C LTR ERV1 1 244 -221 639 245 77 32 chr6 25686952 25687235 -156728007 + MER4C LTR ERV1 275 465 0 603 326 5 0 chr6 25687238 25687431 -156727811 - ERVL LTR ERVL -4764 232 39 634 220 72 151 chr6 25687471 25687848 -156727394 - LTR16A1 LTR ERVL -2 455 109 1108 294 112 44 chr6 25688054 25689338 -156725904 + L1MC4a LINE L1 2868 4239 -1890 2573 54 0 0 chr6 25689357 25689655 -156725587 + AluY SINE Alu 1 298 -13 1146 186 13 0 chr6 25689655 25689881 -156725361 - L1 LINE L1 -1507 4639 4411 237 33 0 0 chr6 25690393 25690423 -156724819 + (CA)n Simple_repeat Simple_repeat 1 30 0 287 270 22 0 chr6 25690496 25690585 -156724657 + MIR SINE MIR 172 262 0 272 336 90 0 chr6 25690719 25690841 -156724401 - MIR SINE MIR -89 173 41 182 313 75 0 chr6 25691139 25691206 -156724036 - L2 LINE L2 -1 3312 3241 1280 210 46 65 chr6 25691359 25691731 -156723511 + MLT1A1 LTR MaLR 1 365 0 416 272 133 17 chr6 25692372 25692545 -156722697 - MIR SINE MIR -22 240 48 464 147 0 21 chr6 25692950 25693045 -156722197 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 183 42 0 0 chr6 25693063 25693087 -156722155 + (GA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr6 25693348 25693373 -156721869 + AT_rich Low_complexity Low_complexity 1 25 0 313 242 0 0 chr6 25694115 25694181 -156721061 - MIR SINE MIR -63 199 134 3707 107 8 8 chr6 25694543 25695050 -156720192 - MER84 LTR ERV1 0 507 1 866 282 135 18 chr6 25695640 25696268 -156718974 + L1MC4a LINE L1 4544 5245 -884 843 306 104 44 chr6 25696274 25696996 -156718246 + L1MC4a LINE L1 5276 6040 -1751 21 36 0 0 chr6 25697054 25697082 -156718160 + AT_rich Low_complexity Low_complexity 1 28 0 2229 113 0 3 chr6 25697082 25697384 -156717858 + AluSp SINE Alu 1 301 -12 418 252 61 48 chr6 25697429 25697576 -156717666 - MIR SINE MIR -31 231 83 405 176 44 0 chr6 25698862 25698930 -156716312 + MER63 DNA MER1_type 673 743 -317 519 347 46 44 chr6 25701010 25701690 -156713552 + L2 LINE L2 2556 3229 -43 314 313 101 23 chr6 25701833 25702050 -156713192 + L1ME4a LINE L1 5279 5512 -2296 2222 162 25 33 chr6 25702139 25702699 -156712543 - MLT2A2 LTR ERVL 0 554 5 243 271 0 0 chr6 25702705 25702764 -156712478 - tRNA-Lys-AAG tRNA tRNA -17 59 1 476 253 68 48 chr6 25702764 25703054 -156712188 + L1ME4a LINE L1 5618 5905 -216 240 319 25 34 chr6 25703456 25703575 -156711667 + L2 LINE L2 3155 3272 0 657 308 25 1 chr6 25703929 25704140 -156711102 + MIR SINE MIR 45 259 -3 186 225 25 0 chr6 25705540 25705580 -156709662 - L2 LINE L2 -81 3191 3151 311 200 57 0 chr6 25706283 25706353 -156708889 + L1ME LINE L1 5774 5847 -274 858 225 38 21 chr6 25706370 25706606 -156708636 + MLT1C LTR MaLR 3 242 -225 2266 99 3 7 chr6 25708449 25708752 -156706490 + AluSx SINE Alu 1 302 -10 2075 107 0 31 chr6 25709202 25709531 -156705711 - AluSg SINE Alu 0 320 1 231 313 91 40 chr6 25709828 25709927 -156705315 + MIR SINE MIR 16 119 -89 2170 88 7 29 chr6 25710685 25710993 -156704249 + AluSx SINE Alu 5 305 -7 243 61 0 0 chr6 25712295 25712328 -156702914 + (CA)n Simple_repeat Simple_repeat 1 33 0 377 235 37 0 chr6 25713648 25713729 -156701513 - MER45C DNA AcHobo -1 952 869 963 237 19 19 chr6 25713821 25714036 -156701206 - MER45C DNA AcHobo -733 220 6 188 358 124 29 chr6 25715227 25715364 -156699878 - L2 LINE L2 0 3272 3123 184 356 127 29 chr6 25715483 25715688 -156699554 - L2 LINE L2 -225 3047 2823 2298 100 3 25 chr6 25715693 25716013 -156699229 + AluSp SINE Alu 1 313 0 563 266 44 0 chr6 25716695 25716853 -156698389 - MIR SINE MIR 0 262 98 607 207 36 93 chr6 25717472 25717665 -156697577 + MIR SINE MIR 81 262 0 1839 163 77 9 chr6 25718143 25718469 -156696773 + MER7A DNA MER2_type 1 346 0 205 308 22 11 chr6 25719294 25719385 -156695857 + CT-rich Low_complexity Low_complexity 1 92 0 504 254 68 59 chr6 25722306 25722542 -156692700 - L2 LINE L2 -43 3270 3033 434 299 22 15 chr6 25723743 25723877 -156691365 - MIR3 SINE MIR -7 201 67 202 333 108 11 chr6 25724463 25724556 -156690686 + MIR SINE MIR 66 167 -95 1675 81 27 9 chr6 25725582 25725803 -156689439 - L1PA8 LINE L1 -7 6165 5941 2200 90 27 0 chr6 25726729 25726906 -156688336 - AluY SINE Alu -3 308 118 333 0 0 0 chr6 25726906 25726943 -156688299 + (TG)n Simple_repeat Simple_repeat 2 38 0 2200 90 27 0 chr6 25726943 25727065 -156688177 - AluY SINE Alu -193 118 1 186 298 223 0 chr6 25727855 25727949 -156687293 + MIR3 SINE MIR 62 176 -32 * 861 303 115 25 chr6 25727938 25728475 -156686767 - L2 LINE L2 0 3313 2734 539 262 211 23 chr6 25728527 25728783 -156686459 - L2 LINE L2 -942 2372 2069 644 319 113 0 chr6 25728908 25729137 -156686105 + MIR SINE MIR 4 258 -4 222 91 0 0 chr6 25729832 25729865 -156685377 + (CA)n Simple_repeat Simple_repeat 2 34 0 2075 133 78 10 chr6 25730507 25730907 -156684335 - L1MA8 LINE L1 -4 6287 5861 440 329 189 23 chr6 25730908 25731437 -156683805 - L2 LINE L2 -568 2746 2130 864 200 0 7 chr6 25731437 25731592 -156683650 + FRAM SINE Alu 1 153 -23 218 362 80 31 chr6 25731598 25731949 -156683293 - L2 LINE L2 -1170 2144 1777 22 0 0 0 chr6 25733855 25733877 -156681365 + AT_rich Low_complexity Low_complexity 1 22 0 2075 118 0 16 chr6 25734692 25734996 -156680246 - AluSc SINE Alu -10 299 1 2031 104 36 4 chr6 25737812 25738122 -156677120 + AluSq SINE Alu 1 319 0 21 82 0 0 chr6 25738531 25738580 -156676662 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr6 25740023 25740046 -156675196 + AT_rich Low_complexity Low_complexity 1 23 0 1431 191 14 24 chr6 25741111 25741404 -156673838 + AluJo SINE Alu 1 290 -22 2598 129 42 4 chr6 25741596 25742053 -156673189 - L1MA8 LINE L1 -10 6281 5808 620 215 224 5 chr6 25743866 25744071 -156671171 - MIR SINE MIR -3 259 10 2470 77 3 3 chr6 25744365 25744676 -156670566 + AluY SINE Alu 1 311 0 2461 73 0 3 chr6 25744765 25745066 -156670176 + AluY SINE Alu 1 300 -11 373 285 244 0 chr6 25745098 25745270 -156669972 + MIR SINE MIR 18 231 -31 2331 80 0 13 chr6 25745370 25745682 -156669560 - AluY SINE Alu -3 308 1 213 290 161 11 chr6 25745715 25745842 -156669400 + MIR SINE MIR 45 185 -23 4369 184 41 13 chr6 25746590 25748428 -156666814 + L1MB3 LINE L1 4296 6183 0 288 356 73 26 chr6 25749065 25749256 -156665986 - MIR SINE MIR -35 227 28 2078 117 16 10 chr6 25749390 25749697 -156665545 + AluSx SINE Alu 1 309 -3 423 56 0 0 chr6 25750780 25750834 -156664408 + (CA)n Simple_repeat Simple_repeat 1 54 0 180 311 0 0 chr6 25751052 25751097 -156664145 - L3 LINE CR1 -642 935 891 471 259 52 7 chr6 25751397 25751532 -156663710 - MIR SINE MIR -51 211 71 951 126 77 13 chr6 25751886 25752170 -156663072 + MLT1B LTR MaLR 7 390 0 532 288 42 42 chr6 25752869 25753081 -156662161 - MIR SINE MIR -1 261 50 185 321 36 12 chr6 25753183 25753267 -156661975 + MER5A DNA MER1_type 17 102 -87 * 207 301 36 24 chr6 25753234 25753317 -156661925 - MER5A DNA MER1_type -95 94 11 31 0 0 0 chr6 25753633 25753664 -156661578 + AT_rich Low_complexity Low_complexity 1 31 0 490 48 0 0 chr6 25755414 25755477 -156659765 - L1PA4 LINE L1 -208 5947 5885 1329 25 0 6 chr6 25755477 25755631 -156659611 + L1PA5 LINE L1 5989 6146 -8 3797 253 111 48 chr6 25756791 25758924 -156656318 + HAL1 LINE L1 4 2270 -237 45 45 0 0 chr6 25759066 25759132 -156656110 + AT_rich Low_complexity Low_complexity 1 66 0 354 281 70 47 chr6 25759194 25759365 -156655877 + HAL1 LINE L1 2332 2506 -1 1850 196 63 42 chr6 25760202 25760473 -156654769 - LTR40a LTR ERVL 0 519 255 438 148 11 0 chr6 25760473 25760561 -156654681 - L1MB4 LINE L1 -4 6176 6088 1850 196 63 42 chr6 25760561 25760649 -156654593 - LTR40a LTR ERVL -264 255 170 940 231 33 0 chr6 25760649 25760861 -156654381 - MER20 DNA MER1_type 0 219 1 1850 196 63 42 chr6 25760861 25761006 -156654236 - LTR40a LTR ERVL -349 170 3 271 215 19 47 chr6 25761222 25761329 -156653913 - HAL1 LINE L1 -375 2132 2029 213 121 0 0 chr6 25761468 25761501 -156653741 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 1823 155 0 14 chr6 25761525 25761821 -156653421 - AluSx SINE Alu -20 292 1 367 278 37 0 chr6 25761823 25761931 -156653311 + MIR SINE MIR 151 262 0 29068 116 14 58 chr6 25763308 25769726 -156645516 + L1PA7 LINE L1 13 6141 -13 317 217 217 26 chr6 25770776 25770928 -156644314 - L3b LINE CR1 -202 1381 1201 319 378 13 42 chr6 25770928 25771166 -156644076 - L3b LINE CR1 -27 1556 1326 263 104 21 0 chr6 25771457 25771505 -156643737 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 421 273 131 21 chr6 25772214 25772353 -156642889 - L1ME4a LINE L1 -5 6116 5994 438 20 0 0 chr6 25772353 25772404 -156642838 + (TC)n Simple_repeat Simple_repeat 1 51 0 421 273 131 21 chr6 25772404 25772546 -156642696 - L1ME4a LINE L1 -127 5994 5804 2589 62 3 3 chr6 25773475 25773784 -156641458 - AluSx SINE Alu -3 309 1 1892 323 131 22 chr6 25774954 25776286 -156638956 + L2 LINE L2 1787 3263 -50 2199 184 29 45 chr6 25776501 25777013 -156638229 + MLT1D LTR MaLR 2 505 0 1916 142 21 21 chr6 25777042 25777379 -156637863 + MER1B DNA MER1_type 2 338 -1 181 279 59 15 chr6 25780040 25780108 -156635134 - L2 LINE L2 -16 3256 3186 328 369 92 10 chr6 25780240 25780446 -156634796 - L2 LINE L2 -214 3058 2836 647 347 133 25 chr6 25780997 25781686 -156633556 - L2 LINE L2 -799 2515 1752 1609 192 20 3 chr6 25783604 25783901 -156631341 - AluJo SINE Alu -10 302 1 25 0 0 0 chr6 25783901 25783926 -156631316 + AT_rich Low_complexity Low_complexity 1 25 0 477 338 152 0 chr6 25784384 25784594 -156630648 - MIR SINE MIR -1 261 20 304 252 89 49 chr6 25784605 25784727 -156630515 - MER112 DNA MER1_type -6 254 128 907 193 25 35 chr6 25784727 25784929 -156630313 + MER45B DNA AcHobo 3 202 -838 2831 182 64 49 chr6 25784938 25785658 -156629584 + MER45B DNA AcHobo 310 1040 0 1345 144 111 78 chr6 25785798 25785993 -156629249 - THE1C LTR MaLR -3 372 158 693 93 0 0 chr6 25785993 25786100 -156629142 + (CGAG)n Simple_repeat Simple_repeat 2 108 0 1345 144 111 78 chr6 25786100 25786264 -156628978 - THE1C LTR MaLR -217 158 1 349 313 112 0 chr6 25786862 25786996 -156628246 - MIR SINE MIR -80 182 34 360 119 0 0 chr6 25789372 25789431 -156625811 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 186 277 0 84 chr6 25789864 25789947 -156625295 + L2 LINE L2 3020 3095 -177 219 289 77 0 chr6 25790080 25790132 -156625110 + L2 LINE L2 3169 3224 -48 243 307 40 0 chr6 25791364 25791439 -156623803 - L2 LINE L2 -43 3229 3152 454 316 153 26 chr6 25791708 25792164 -156623078 - L2 LINE L2 -560 2754 2241 1815 212 60 19 chr6 25794240 25794725 -156620517 - MLT1D LTR MaLR 0 505 1 590 280 202 27 chr6 25795288 25795533 -156619709 - L2 LINE L2 -5 3308 2988 1820 156 3 11 chr6 25795533 25795846 -156619396 + AluJo SINE Alu 1 311 0 590 280 202 27 chr6 25795846 25795931 -156619311 - L2 LINE L2 -325 2988 2919 181 323 108 0 chr6 25796392 25796485 -156618757 + L2 LINE L2 3170 3272 -41 306 73 0 0 chr6 25797178 25797219 -156618023 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 333 101 0 chr6 25797668 25797767 -156617475 - MIR3 SINE MIR -10 198 90 190 265 0 0 chr6 25797919 25797968 -156617274 + MIR SINE MIR 209 257 -5 180 77 0 0 chr6 25797972 25797998 -156617244 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 341 320 102 87 chr6 25799078 25799353 -156615889 - L2 LINE L2 -5 3267 2989 404 384 42 3 chr6 25799543 25799874 -156615368 - L2 LINE L2 -536 2778 2435 * 465 314 162 34 chr6 25799822 25800230 -156615012 + L3 LINE CR1 389 848 -729 3576 183 160 18 chr6 25800551 25801901 -156613341 + L1PA16 LINE L1 3720 5348 -818 2148 134 3 0 chr6 25801901 25802200 -156613042 + AluSq SINE Alu 1 300 -13 3576 183 160 18 chr6 25802200 25802370 -156612872 + L1PA16 LINE L1 5348 5492 -674 995 188 0 24 chr6 25802370 25802557 -156612685 + L1PA15 LINE L1 5956 6158 -7 4181 138 5 1 chr6 25802578 25803251 -156611991 + L1PA16 LINE L1 5477 6151 -15 194 224 35 0 chr6 25803265 25803323 -156611919 + GA-rich Low_complexity Low_complexity 3 62 0 231 209 0 0 chr6 25803496 25803539 -156611703 - L2 LINE L2 -4 3309 3267 296 300 127 0 chr6 25803621 25803731 -156611511 + L2 LINE L2 3149 3272 0 1767 152 27 24 chr6 25804071 25804368 -156610874 + AluJo SINE Alu 6 303 -9 318 132 0 0 chr6 25805576 25805629 -156609613 + (T)n Simple_repeat Simple_repeat 1 53 0 1685 182 18 0 chr6 25806793 25807122 -156608120 - L1PB4 LINE L1 0 6156 5822 260 214 157 0 chr6 25807226 25807296 -156607946 - LTR37A LTR ERV1 -345 81 1 1524 157 47 50 chr6 25807315 25807447 -156607795 - MER31-int LTR ERV1 -727 4209 4078 2430 86 0 0 chr6 25807447 25807748 -156607494 - AluY SINE Alu -10 301 1 1524 157 47 50 chr6 25807748 25807934 -156607308 - MER31-int LTR ERV1 -858 4078 3892 348 191 0 0 chr6 25807942 25808005 -156607237 - Charlie3 DNA MER1_type -25 2685 2623 231 209 0 0 chr6 25808002 25808045 -156607197 - Charlie3 DNA MER1_type -2612 98 56 * 3947 184 50 68 chr6 25808077 25809202 -156606040 - MER31-int LTR ERV1 -1042 3894 2790 2322 92 0 3 chr6 25809202 25809508 -156605734 + AluSq SINE Alu 1 305 -8 3947 184 50 68 chr6 25809508 25809592 -156605650 - MER31-int LTR ERV1 -2146 2790 2706 192 40 0 0 chr6 25809737 25809762 -156605480 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 25809986 25810008 -156605234 + AT_rich Low_complexity Low_complexity 1 22 0 364 242 83 125 chr6 25810892 25811168 -156604074 - MIR SINE MIR 0 262 4 529 211 0 0 chr6 25811700 25811795 -156603447 + FLAM_A SINE Alu 1 95 -47 1453 193 3 24 chr6 25811795 25812085 -156603157 + AluJo SINE Alu 26 309 -3 466 333 59 34 chr6 25812171 25812408 -156602834 + MIR SINE MIR 12 254 -8 2112 132 0 13 chr6 25813015 25813318 -156601924 - AluSx SINE Alu -13 299 1 804 194 0 0 chr6 25813822 25813951 -156601291 - FLAM_A SINE Alu -4 129 1 204 40 0 0 chr6 25813962 25813987 -156601255 + (A)n Simple_repeat Simple_repeat 1 25 0 257 250 113 0 chr6 25814310 25814390 -156600852 - MIR SINE MIR -54 208 120 2188 110 13 0 chr6 25814721 25815020 -156600222 - AluSx SINE Alu -9 303 1 442 219 207 39 chr6 25816365 25816621 -156598621 + L2 LINE L2 3015 3313 0 529 241 211 77 chr6 25816663 25816803 -156598439 + L2 LINE L2 2560 2680 -633 2331 82 0 20 chr6 25816803 25817107 -156598135 + AluSg1 SINE Alu 1 298 -11 529 241 211 77 chr6 25817107 25817516 -156597726 + L2 LINE L2 2680 3216 -97 198 103 0 0 chr6 25817516 25817545 -156597697 + (CA)n Simple_repeat Simple_repeat 1 29 0 529 241 211 77 chr6 25817545 25817656 -156597586 + L2 LINE L2 3216 3311 -2 300 292 117 50 chr6 25817803 25818043 -156597199 + L2 LINE L2 3013 3268 -45 2010 151 0 0 chr6 25818788 25819086 -156596156 + AluJb SINE Alu 1 298 -14 289 338 112 39 chr6 25819145 25819627 -156595615 + L2 LINE L2 2288 2804 -510 589 158 0 0 chr6 25819824 25819925 -156595317 - AluSg/x SINE Alu -3 306 206 346 319 76 19 chr6 25819934 25820091 -156595151 + MIR SINE MIR 89 254 -8 189 268 0 0 chr6 25820824 25820865 -156594377 + L2 LINE L2 3231 3271 -1 2870 6 0 0 chr6 25822459 25822770 -156592472 - AluYa5 SINE Alu 0 311 1 2810 13 0 0 chr6 25823955 25824262 -156590980 - AluYa5 SINE Alu -4 307 1 791 182 0 0 chr6 25825064 25825185 -156590057 + FLAM_A SINE Alu 1 121 -12 1066 187 4 52 chr6 25825193 25825423 -156589819 - MER20 DNA MER1_type 0 219 1 746 110 110 17 chr6 25825586 25825704 -156589538 - FLAM_C SINE Alu -4 129 1 11753 165 13 8 chr6 25825964 25826555 -156588687 + L1PA13 LINE L1 2438 3024 -3139 1880 150 17 7 chr6 25826555 25826842 -156588400 + AluJb SINE Alu 3 292 -20 11753 165 13 8 chr6 25826842 25829957 -156585285 + L1PA13 LINE L1 3024 6162 -1 419 298 93 24 chr6 25830177 25830425 -156584817 + L1MC/D LINE L1 4936 5200 -946 2220 137 12 9 chr6 25830481 25830817 -156584425 - MER1B DNA MER1_type 0 337 1 872 291 20 12 chr6 25830905 25831156 -156584086 + MIR SINE MIR 1 253 -9 493 278 146 9 chr6 25831257 25831469 -156583773 + L1MC/D LINE L1 5513 5753 -2055 3144 118 29 4 chr6 25831469 25831959 -156583283 + L1PA16 LINE L1 5648 6149 -17 308 65 43 0 chr6 25832006 25832052 -156583190 + LTR54 LTR ERV1 402 449 -61 2173 119 9 25 chr6 25832109 25832427 -156582815 + AluSq SINE Alu 1 313 0 1545 178 44 30 chr6 25832587 25832885 -156582357 + AluJb SINE Alu 3 304 -8 2533 53 0 0 chr6 25833565 25833869 -156581373 + AluY SINE Alu 1 304 -7 531 222 106 48 chr6 25833941 25834130 -156581112 - MIR SINE MIR 0 262 63 390 355 16 0 chr6 25834957 25835081 -156580161 - L2 LINE L2 -4 3268 3143 25 0 0 0 chr6 25835100 25835125 -156580117 + AT_rich Low_complexity Low_complexity 1 25 0 2522 93 0 0 chr6 25835675 25835985 -156579257 - AluSx SINE Alu -2 310 1 629 297 101 14 chr6 25836014 25836310 -156578932 + L3 LINE CR1 1141 1462 -115 264 241 0 0 chr6 25836504 25836558 -156578684 - L2 LINE L2 -86 3186 3133 385 331 58 46 chr6 25836886 25837146 -156578096 + MLT1K LTR MaLR 129 391 -197 1804 145 21 28 chr6 25839275 25839564 -156575678 + AluJo SINE Alu 1 287 -25 2025 163 0 0 chr6 25840065 25840371 -156574871 + AluSx SINE Alu 1 306 -6 626 286 83 14 chr6 25840695 25840942 -156574300 + MIR SINE MIR 2 262 0 2004 140 3 0 chr6 25842300 25842586 -156572656 + AluSx SINE Alu 1 287 -25 291 261 137 76 chr6 25842693 25843374 -156571868 + L1MEd LINE L1 300 1021 -5098 615 124 105 0 chr6 25843382 25843487 -156571755 - AluSg/x SINE Alu -3 309 194 21 0 0 0 chr6 25843686 25843707 -156571535 + AT_rich Low_complexity Low_complexity 1 21 0 2498 87 0 0 chr6 25843862 25844174 -156571068 - AluSx SINE Alu 0 312 1 347 108 0 302 chr6 25844561 25844690 -156570552 + FRAM SINE Alu 56 145 -21 183 146 0 0 chr6 25844696 25844737 -156570505 + (TA)n Simple_repeat Simple_repeat 1 41 0 316 267 100 86 chr6 25845083 25845180 -156570062 + MIR SINE MIR 2 96 -166 2298 105 3 16 chr6 25845180 25845495 -156569747 + AluSq SINE Alu 1 311 -2 316 267 100 86 chr6 25845495 25845607 -156569635 + MIR SINE MIR 96 214 -48 447 322 43 43 chr6 25845682 25845890 -156569352 + MIR SINE MIR 53 260 -2 1241 236 53 16 chr6 25850084 25850630 -156564612 + L1MEd LINE L1 2618 3183 -2946 5963 132 93 13 chr6 25850826 25851966 -156563276 - Tigger3b DNA MER2_type 0 1231 1 226 239 75 15 chr6 25851975 25852042 -156563200 + Tigger5 DNA MER2_type 8 78 -2245 283 241 218 0 chr6 25852123 25852256 -156562986 + L1MEd LINE L1 3745 3906 -2223 1872 268 85 29 chr6 25852262 25853782 -156561460 + L1MEd LINE L1 4539 6146 -7 25 65 0 0 chr6 25853785 25853831 -156561411 + AT_rich Low_complexity Low_complexity 1 46 0 243 349 34 48 chr6 25854677 25854823 -156560419 - L2 LINE L2 -2 3270 3127 332 317 192 30 chr6 25855102 25855373 -156559869 - L2 LINE L2 -552 2762 2448 2812 111 9 79 chr6 25855442 25855972 -156559270 - LTR12 LTR ERV1 -220 494 2 2740 106 97 5 chr6 25855997 25856431 -156558811 + MER101 LTR ERV1 1 474 0 21 36 0 0 chr6 25857411 25857439 -156557803 + AT_rich Low_complexity Low_complexity 1 28 0 948 283 56 43 chr6 25858771 25859185 -156556057 + LTR16C LTR ERVL 73 491 0 234 326 0 0 chr6 25859189 25859287 -156555955 + HAL1 LINE L1 1495 1592 -915 12206 154 29 55 chr6 25859297 25862406 -156552836 + L1MA3 LINE L1 17 3815 -3750 939 156 0 0 chr6 25862406 25862547 -156552695 + FLAM_C SINE Alu 1 141 -2 12206 154 29 55 chr6 25862547 25863387 -156551855 + L1MA3 LINE L1 3815 4676 -2889 6095 131 33 4 chr6 25863387 25864845 -156550397 + L1MA3 LINE L1 6216 7724 0 812 304 32 6 chr6 25864857 25865170 -156550072 + HAL1 LINE L1 1583 1903 -604 252 236 0 0 chr6 25865182 25865237 -156550005 + MIR SINE MIR 197 251 -11 418 204 0 21 chr6 25865463 25865556 -156549686 - MER103 DNA DNA -75 91 1 2137 146 0 0 chr6 25865592 25865900 -156549342 + AluSx SINE Alu 1 308 -4 2013 118 0 4 chr6 25865989 25866259 -156548983 - AluSx SINE Alu -43 269 1 194 354 15 0 chr6 25866919 25866984 -156548258 + L2 LINE L2 3206 3271 -1 1968 122 49 0 chr6 25868327 25868654 -156546588 + AluJb SINE Alu 1 341 0 3063 119 14 4 chr6 25869868 25870381 -156544861 + L1P5 LINE L1 5260 5777 -379 292 297 11 0 chr6 25870384 25870475 -156544767 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 455 288 120 20 chr6 25871882 25872119 -156543123 - MIR SINE MIR 0 262 1 263 226 0 48 chr6 25872224 25872286 -156542956 + L2 LINE L2 3246 3304 -9 2185 135 0 0 chr6 25872423 25872726 -156542516 + AluSx SINE Alu 1 303 -9 248 254 0 0 chr6 25872946 25873009 -156542233 - L1MC/D LINE L1 -1909 5899 5837 720 156 0 33 chr6 25873030 25873152 -156542090 - FRAM SINE Alu -14 162 45 2215 122 3 6 chr6 25873967 25874279 -156540963 + AluSq SINE Alu 1 311 -2 558 79 0 0 chr6 25874717 25874793 -156540449 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 507 279 53 43 chr6 25876549 25877050 -156538192 + L1MCc LINE L1 1130 1796 -4889 1409 243 75 33 chr6 25877051 25877280 -156537962 + L1MCc LINE L1 2144 2362 -4760 2099 98 4 4 chr6 25877280 25877557 -156537685 + AluSg SINE Alu 18 294 -16 1409 243 75 33 chr6 25877557 25878057 -156537185 + L1MCc LINE L1 2362 3094 -4028 819 168 0 40 chr6 25878064 25878213 -156537029 + FLAM_C SINE Alu 1 143 0 338 320 44 61 chr6 25878668 25878896 -156536346 + L2 LINE L2 2070 2293 -1021 199 298 85 0 chr6 25879684 25879778 -156535464 - MIR SINE MIR -7 255 154 246 316 164 6 chr6 25879826 25879997 -156535245 - MIR SINE MIR -56 206 9 2356 135 41 21 chr6 25880100 25880536 -156534706 + LTR7 LTR ERV1 1 445 -5 28 0 0 0 chr6 25880665 25880693 -156534549 + AT_rich Low_complexity Low_complexity 1 28 0 251 323 79 8 chr6 25882009 25882136 -156533106 - L2 LINE L2 -3 3310 3175 211 301 131 20 chr6 25882174 25882327 -156532915 + MIR3 SINE MIR 24 193 -15 1789 182 3 16 chr6 25882408 25882721 -156532521 + AluJo SINE Alu 1 309 -3 22 0 0 0 chr6 25883390 25883412 -156531830 + AT_rich Low_complexity Low_complexity 1 22 0 474 351 7 0 chr6 25883705 25883856 -156531386 - L2 LINE L2 -2 3311 3160 1135 306 184 14 chr6 25883881 25884711 -156530531 - L2 LINE L2 -412 2902 1932 463 303 155 28 chr6 25884825 25885218 -156530024 + L1ME4a LINE L1 5528 5970 -151 209 280 0 0 chr6 25885276 25885326 -156529916 + (CATA)n Simple_repeat Simple_repeat 3 52 0 24 103 0 0 chr6 25885392 25885479 -156529763 + AT_rich Low_complexity Low_complexity 1 87 0 2131 251 38 45 chr6 25885480 25886589 -156528653 + L1MC4 LINE L1 4766 5396 -750 5330 136 10 27 chr6 25886626 25886995 -156528247 - L1PB4 LINE L1 -8 6148 5774 378 0 0 0 chr6 25886995 25887037 -156528205 + (TG)n Simple_repeat Simple_repeat 2 43 0 5330 136 10 27 chr6 25887037 25887725 -156527517 - L1PB4 LINE L1 -382 5774 5106 330 181 0 0 chr6 25887745 25887817 -156527425 - L1PB4 LINE L1 -1013 5133 5062 * 4153 214 47 68 chr6 25887813 25888580 -156526662 + L1MC4 LINE L1 5847 6629 -1413 2119 120 7 0 chr6 25888580 25888863 -156526379 - AluSx SINE Alu -27 285 1 4153 214 47 68 chr6 25888863 25889704 -156525538 + L1MC4 LINE L1 6629 7486 -556 3172 190 48 10 chr6 25889704 25890388 -156524854 + MER67C LTR ERV1 1 710 0 4153 214 47 68 chr6 25890388 25890446 -156524796 + L1MC4 LINE L1 7486 7464 -578 5719 64 16 11 chr6 25890446 25891208 -156524034 + MER4E LTR ERV1 1 766 0 4153 214 47 68 chr6 25891208 25891295 -156523947 + L1MC4 LINE L1 7463 7550 -492 721 217 32 19 chr6 25891295 25891452 -156523790 + AluSg/x SINE Alu 135 293 -17 255 74 246 0 chr6 25891452 25891504 -156523738 + L1MD3 LINE L1 7461 7701 -280 1011 221 60 15 chr6 25891547 25891814 -156523428 + L1MC4a LINE L1 7530 7808 0 1526 226 3 0 chr6 25892833 25893142 -156522100 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr6 25894021 25894043 -156521199 + AT_rich Low_complexity Low_complexity 1 22 0 748 179 0 12 chr6 25894308 25894476 -156520766 + GA-rich Low_complexity Low_complexity 3 168 0 1882 152 3 7 chr6 25894810 25895106 -156520136 + AluJb SINE Alu 4 298 -14 208 297 117 27 chr6 25895180 25895291 -156519951 + L2 LINE L2 3142 3262 -10 297 0 0 0 chr6 25895685 25895718 -156519524 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2225 88 0 3 chr6 25895721 25896005 -156519237 - AluSq SINE Alu -29 284 2 206 356 14 14 chr6 25897233 25897306 -156517936 - MIR SINE MIR -186 76 4 22 0 0 0 chr6 25898304 25898326 -156516916 + AT_rich Low_complexity Low_complexity 1 22 0 254 374 27 32 chr6 25898908 25899095 -156516147 + L3b LINE CR1 1106 1291 -292 858 166 0 14 chr6 25899530 25899669 -156515573 - AluJb SINE Alu -13 299 163 21 0 0 0 chr6 25899877 25899898 -156515344 + AT_rich Low_complexity Low_complexity 1 21 0 1006 289 109 29 chr6 25900436 25900987 -156514255 + MLT1G1 LTR MaLR 1 595 0 561 342 27 78 chr6 25901098 25901507 -156513735 - L2 LINE L2 0 3272 2885 303 356 38 0 chr6 25901507 25901639 -156513603 - MLT1G1 LTR MaLR -405 190 54 396 310 124 54 chr6 25901642 25901694 -156513548 - L2 LINE L2 -458 2856 2809 537 299 75 17 chr6 25901694 25901935 -156513307 + MER112 DNA MER1_type 2 256 0 396 310 124 54 chr6 25901935 25902343 -156512899 - L2 LINE L2 -505 2809 2364 1154 161 62 21 chr6 25902692 25902935 -156512307 - THE1C LTR MaLR -122 253 1 483 282 0 103 chr6 25903111 25903345 -156511897 + LTR67 LTR ERVL 348 557 0 399 296 26 20 chr6 25903822 25903974 -156511268 - MIR SINE MIR -12 250 98 24 0 0 0 chr6 25904188 25904212 -156511030 + AT_rich Low_complexity Low_complexity 1 24 0 2171 116 0 13 chr6 25904493 25904796 -156510446 + AluSx SINE Alu 1 299 -13 451 205 45 36 chr6 25905085 25905197 -156510045 + MIR SINE MIR 120 232 -30 615 316 128 67 chr6 25905349 25905642 -156509600 + L2 LINE L2 2391 2665 -607 2182 102 7 3 chr6 25905642 25905926 -156509316 - AluSq SINE Alu -27 286 2 615 316 128 67 chr6 25905926 25906455 -156508787 + L2 LINE L2 2665 3272 0 366 381 12 12 chr6 25907095 25907255 -156507987 + L2 LINE L2 2904 3063 -209 21 36 0 0 chr6 25907294 25907322 -156507920 + AT_rich Low_complexity Low_complexity 1 28 0 2091 136 0 0 chr6 25907715 25908009 -156507233 - AluSx SINE Alu -18 294 1 21 0 0 0 chr6 25908495 25908516 -156506726 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr6 25908932 25908957 -156506285 + (CA)n Simple_repeat Simple_repeat 2 26 0 2121 97 20 10 chr6 25910031 25910331 -156504911 - AluY SINE Alu -8 303 1 1854 144 50 19 chr6 25910820 25911180 -156504062 - L1MA7 LINE L1 -1 6290 5920 605 152 0 0 chr6 25911188 25911287 -156503955 + L1MA7 LINE L1 5802 5900 -400 1757 126 96 0 chr6 25912882 25913152 -156502090 + AluSx SINE Alu 3 298 -14 2092 116 10 3 chr6 25913457 25913750 -156501492 + AluSx SINE Alu 3 297 -15 231 238 148 40 chr6 25914294 25914377 -156500865 + L2 LINE L2 3198 3295 -18 1329 185 108 16 chr6 25914377 25914691 -156500551 - MER2 DNA MER2_type 0 344 2 231 238 148 40 chr6 25914691 25914708 -156500534 + L2 LINE L2 3295 3309 -4 280 250 44 0 chr6 25915045 25915113 -156500129 - LTR65 LTR ERV1 -6 663 593 622 253 25 0 chr6 25915374 25915532 -156499710 - LTR65 LTR ERV1 -505 164 3 285 337 61 25 chr6 25915748 25915911 -156499331 + L2 LINE L2 3078 3246 -26 2249 90 0 0 chr6 25918805 25919094 -156496148 + AluSg SINE Alu 1 289 -21 25 31 0 0 chr6 25920658 25920690 -156494552 + AT_rich Low_complexity Low_complexity 1 32 0 236 312 153 37 chr6 25920970 25921159 -156494083 + L3b LINE CR1 1353 1563 -20 24 77 0 0 chr6 25921319 25921371 -156493871 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr6 25922389 25922410 -156492832 + AT_rich Low_complexity Low_complexity 1 21 0 295 304 54 0 chr6 25922490 25922602 -156492640 - MIR SINE MIR -72 190 73 2343 167 98 23 chr6 25923008 25923540 -156491702 + L1MB7 LINE L1 5602 6173 -11 191 310 126 11 chr6 25923656 25923743 -156491499 + L2 LINE L2 3112 3208 -64 186 43 0 0 chr6 25925109 25925132 -156490110 + (CA)n Simple_repeat Simple_repeat 2 24 0 638 177 0 24 chr6 25925312 25925436 -156489806 + FLAM_C SINE Alu 1 121 -22 1024 138 80 62 chr6 25925445 25925670 -156489572 + AluJo SINE Alu 59 287 -25 708 66 80 3 chr6 25925675 25925956 -156489286 + (TA)n Simple_repeat Simple_repeat 1 302 0 187 92 77 0 chr6 25925975 25926040 -156489202 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 * 444 59 82 24 chr6 25926026 25926196 -156489046 + (TA)n Simple_repeat Simple_repeat 1 180 0 44 56 0 0 chr6 25926196 25926268 -156488974 + AT_rich Low_complexity Low_complexity 1 72 0 598 59 95 4 chr6 25926387 25926883 -156488359 + (TA)n Simple_repeat Simple_repeat 1 540 0 683 184 0 0 chr6 25926904 25927018 -156488224 + FLAM_C SINE Alu 3 116 -17 192 77 0 0 chr6 25927018 25927044 -156488198 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 25927288 25927310 -156487932 + GC_rich Low_complexity Low_complexity 1 22 0 249 227 133 0 chr6 25927597 25927672 -156487570 - L2 LINE L2 0 3272 3188 528 265 148 16 chr6 25928043 25928232 -156487010 - MIR SINE MIR 0 262 49 1878 104 4 4 chr6 25928450 25928729 -156486513 + L1PA14 LINE L1 5883 6161 0 619 182 144 8 chr6 25928969 25929101 -156486141 - MER45A DNA AcHobo -25 153 4 221 312 13 0 chr6 25929112 25929189 -156486053 + L2 LINE L2 2227 2304 -1010 1335 205 87 9 chr6 25929189 25929521 -156485721 + MER63B DNA MER1_type 4 361 -75 192 208 30 0 chr6 25929523 25929624 -156485618 + (TTTA)n Simple_repeat Simple_repeat 1 104 0 367 195 23 6 chr6 25929647 25929821 -156485421 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 367 177 43 149 chr6 25929831 25929972 -156485270 + MER63 DNA MER1_type 930 1055 -5 205 387 70 7 chr6 25929978 25930120 -156485122 + L2 LINE L2 2298 2448 -866 1785 169 0 23 chr6 25930531 25930839 -156484403 + AluJb SINE Alu 1 301 -11 396 368 86 23 chr6 25930988 25931339 -156483903 + L2 LINE L2 2494 2866 -448 190 296 8 112 chr6 25931399 25931524 -156483718 + L2 LINE L2 2966 3077 -195 1091 198 0 0 chr6 25931584 25931756 -156483486 - FAM SINE Alu -3 172 1 403 328 0 0 chr6 25931849 25931965 -156483277 + L2 LINE L2 3197 3312 -1 2093 138 7 0 chr6 25932614 25932911 -156482331 - AluSq SINE Alu -14 299 1 680 160 0 9 chr6 25932968 25933074 -156482168 + U6 snRNA snRNA 3 107 0 2122 108 0 7 chr6 25933116 25933437 -156481805 - AluSx SINE Alu 0 319 1 197 246 0 49 chr6 25933847 25933908 -156481334 + L2 LINE L2 3215 3272 0 1285 293 69 90 chr6 25934071 25934169 -156481073 + L1ME3A LINE L1 300 399 -6028 1603 165 53 11 chr6 25934169 25934454 -156480788 - AluJo SINE Alu -15 297 1 1285 293 69 90 chr6 25934454 25935985 -156479257 + L1ME3A LINE L1 399 2141 -4286 2169 116 33 0 chr6 25936181 25936483 -156478759 + AluSx SINE Alu 1 312 0 2275 89 3 3 chr6 25936646 25936937 -156478305 + AluSx SINE Alu 3 293 -19 1788 163 3 13 chr6 25937076 25937377 -156477865 + AluJb SINE Alu 1 298 -14 311 233 54 15 chr6 25937377 25937510 -156477732 + L1ME3A LINE L1 2405 2544 -3882 1325 154 40 86 chr6 25937513 25937743 -156477499 + L1MC/D LINE L1 5443 5610 -701 1933 162 0 7 chr6 25937743 25938046 -156477196 + AluJb SINE Alu 1 301 -11 1325 154 40 86 chr6 25938046 25938250 -156476992 + L1MC/D LINE L1 5610 5822 -489 * 1655 262 72 13 chr6 25938240 25938328 -156476914 + L1ME3A LINE L1 5469 5550 -900 2272 95 0 3 chr6 25938328 25938624 -156476618 + AluSx SINE Alu 18 312 0 1655 262 72 13 chr6 25938624 25938637 -156476605 + L1ME3A LINE L1 5550 5561 -889 1704 171 7 14 chr6 25938637 25938930 -156476312 + AluJb SINE Alu 1 291 -21 7892 29 7 8 chr6 25938930 25939455 -156475787 + L1PA4 LINE L1 5132 5657 -498 2424 48 7 0 chr6 25939455 25939746 -156475496 + AluY SINE Alu 1 293 -18 7892 29 7 8 chr6 25939746 25940244 -156474998 + L1PA4 LINE L1 5657 6154 -1 1655 262 72 13 chr6 25940244 25940851 -156474391 + L1ME3A LINE L1 5560 6231 -219 182 121 0 91 chr6 25941153 25941196 -156474046 + (GGAA)n Simple_repeat Simple_repeat 2 39 -22 2493 67 0 0 chr6 25941196 25941494 -156473748 + AluY SINE Alu 1 298 -13 182 121 0 91 chr6 25941494 25941516 -156473726 + (GGAA)n Simple_repeat Simple_repeat 39 61 0 2073 107 6 38 chr6 25941601 25941919 -156473323 + AluSx SINE Alu 1 308 -4 474 309 236 10 chr6 25942830 25943118 -156472124 + L2 LINE L2 2943 3295 -18 297 151 0 0 chr6 25943175 25943228 -156472014 + GA-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 25944060 25944081 -156471161 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr6 25944130 25944152 -156471090 + AT_rich Low_complexity Low_complexity 1 22 0 407 268 174 37 chr6 25944899 25945027 -156470215 + MIR SINE MIR 47 211 -51 2231 103 0 3 chr6 25945027 25945319 -156469923 + AluSq SINE Alu 1 291 -22 407 268 174 37 chr6 25945319 25945380 -156469862 + MIR SINE MIR 211 262 0 356 287 37 11 chr6 25945764 25945994 -156469248 + LTR16A1 LTR ERVL 187 456 -1 1115 121 18 30 chr6 25946132 25946297 -156468945 + FRAM SINE Alu 4 166 0 7608 55 1 1 chr6 25946306 25947524 -156467718 + L1PA6 LINE L1 4930 6154 0 295 148 0 37 chr6 25947533 25947587 -156467655 - MLT1B LTR MaLR -338 52 1 1414 124 24 79 chr6 25948095 25948135 -156467107 - L1MA9 LINE L1 -6 6306 6265 1658 168 44 10 chr6 25948135 25948432 -156466810 + AluJo SINE Alu 3 309 -3 1414 124 24 79 chr6 25948432 25948682 -156466560 - L1MA9 LINE L1 -47 6265 6032 292 183 0 33 chr6 25948682 25948742 -156466500 + L1MA6 LINE L1 5883 5940 -360 207 0 0 0 chr6 25948758 25948781 -156466461 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 693 194 0 31 chr6 25948985 25949114 -156466128 + FLAM_C SINE Alu 2 126 -7 865 110 4 25 chr6 25949127 25949362 -156465880 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 2447 84 3 0 chr6 25950390 25950699 -156464543 + AluSp SINE Alu 1 310 -3 22 0 0 0 chr6 25950867 25950889 -156464353 + AT_rich Low_complexity Low_complexity 1 22 0 2648 42 0 0 chr6 25951329 25951638 -156463604 + AluY SINE Alu 1 309 -2 5415 77 3 3 chr6 25951668 25952328 -156462914 - L1PA7 LINE L1 0 6154 5495 854 238 14 22 chr6 25952328 25952551 -156462691 + HsTC2 DNA Tc2 19 239 -1659 203 0 0 36 chr6 25952561 25952589 -156462653 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 274 180 0 33 chr6 25952603 25952664 -156462578 - LTR30 LTR ERV1 -108 614 556 619 195 20 140 chr6 25952692 25952847 -156462395 + HsTC2 DNA Tc2 1629 1734 -164 1436 234 0 17 chr6 25952847 25953146 -156462096 + AluJo SINE Alu 1 294 -18 619 195 20 140 chr6 25953146 25953282 -156461960 + HsTC2 DNA Tc2 1734 1885 -13 1991 105 10 53 chr6 25953384 25953688 -156461554 + AluSx SINE Alu 1 291 -21 2066 142 64 45 chr6 25953797 25954064 -156461178 - MER47A DNA MER2_type -1957 366 89 2056 126 10 0 chr6 25954064 25954366 -156460876 - AluSx SINE Alu -7 305 1 2066 142 64 45 chr6 25954366 25954457 -156460785 - MER47A DNA MER2_type -2234 89 1 22 0 0 0 chr6 25954545 25954567 -156460675 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 25954835 25954863 -156460379 + AT_rich Low_complexity Low_complexity 1 28 0 2203 138 0 0 chr6 25954903 25955214 -156460028 + AluSx SINE Alu 1 311 -1 270 0 0 0 chr6 25955223 25955253 -156459989 + (CA)n Simple_repeat Simple_repeat 2 31 0 2317 107 0 3 chr6 25955731 25956040 -156459202 + AluSq SINE Alu 1 308 -5 2606 37 3 0 chr6 25956433 25956733 -156458509 + AluY SINE Alu 1 301 -10 2148 113 0 0 chr6 25956898 25957189 -156458053 + AluSg SINE Alu 5 295 -15 2114 140 0 9 chr6 25957399 25957714 -156457528 + AluSx SINE Alu 1 312 0 1033 205 57 14 chr6 25957761 25957971 -156457271 + MER20 DNA MER1_type 1 219 0 2218 116 3 0 chr6 25958220 25958522 -156456720 + AluSp SINE Alu 11 313 0 2117 184 3 0 chr6 25959536 25959889 -156455353 + MER47B DNA MER2_type 1 354 -64 309 271 0 23 chr6 25959890 25959914 -156455328 + (TA)n Simple_repeat Simple_repeat 1 24 -106 2071 147 0 3 chr6 25959914 25960214 -156455028 + AluSx SINE Alu 1 299 -13 309 271 0 23 chr6 25960214 25960310 -156454932 + (TA)n Simple_repeat Simple_repeat 24 120 -10 351 0 0 0 chr6 25960310 25960349 -156454893 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 309 271 0 23 chr6 25960349 25960360 -156454882 + (TA)n Simple_repeat Simple_repeat 120 130 0 1605 177 17 27 chr6 25960361 25960660 -156454582 - AluJb SINE Alu -16 296 1 420 175 0 0 chr6 25960661 25960724 -156454518 + MER47B DNA MER2_type 356 418 0 1218 310 68 64 chr6 25960746 25960994 -156454248 + L2 LINE L2 2061 2307 -1007 2047 131 16 13 chr6 25960994 25961306 -156453936 - AluSq SINE Alu 0 313 1 1218 310 68 64 chr6 25961306 25961479 -156453763 + L2 LINE L2 2307 2478 -836 2191 128 11 121 chr6 25961479 25961917 -156453325 + MLT1B LTR MaLR 1 390 0 1218 310 68 64 chr6 25961917 25962323 -156452919 + L2 LINE L2 2478 2892 -422 2188 99 3 0 chr6 25963088 25963464 -156451778 - AluSq SINE Alu 0 377 1 2388 192 63 103 chr6 25964084 25964799 -156450443 - LTR8A LTR ERV1 -8 719 34 1122 287 81 42 chr6 25964814 25964966 -156450276 + L2 LINE L2 1849 1994 -1320 1700 173 287 26 chr6 25964966 25965458 -156449784 - LTR29 LTR ERV1 -1 621 2 1122 287 81 42 chr6 25965458 25965631 -156449611 + L2 LINE L2 1994 2159 -1155 2079 129 10 0 chr6 25965631 25965925 -156449317 - AluSq SINE Alu -16 297 1 1122 287 81 42 chr6 25965925 25966092 -156449150 + L2 LINE L2 2159 2361 -953 1875 110 8 4 chr6 25966100 25966410 -156448832 - AluSp SINE Alu 0 328 18 546 256 32 15 chr6 25966435 25966639 -156448603 - L1MCc LINE L1 -4586 2536 2144 585 265 45 69 chr6 25966640 25967156 -156448086 - L1MCc LINE L1 -4889 1534 1130 977 254 171 28 chr6 25968678 25969178 -156446064 + L2 LINE L2 2732 3312 -1 182 322 59 25 chr6 25969302 25969420 -156445822 - L2 LINE L2 -164 3108 2987 236 356 35 0 chr6 25969535 25969622 -156445620 - L2 LINE L2 -537 2777 2688 524 237 10 0 chr6 25969817 25969914 -156445328 - MER2 DNA MER2_type -247 98 1 420 342 73 6 chr6 25969966 25970179 -156445063 + MIR SINE MIR 5 236 -26 2046 64 0 4 chr6 25970379 25970628 -156444614 - AluY SINE Alu -10 301 54 346 303 83 23 chr6 25970632 25970764 -156444478 - MIR SINE MIR -117 145 6 2225 110 7 0 chr6 25970829 25971121 -156444121 - AluSx SINE Alu -18 294 1 686 260 43 47 chr6 25971121 25971421 -156443821 - L1ME4a LINE L1 -228 5893 5595 2317 95 0 7 chr6 25971442 25971748 -156443494 + AluSx SINE Alu 1 304 -8 729 308 57 0 chr6 25972256 25972555 -156442687 + MER58B DNA MER1_type 26 341 0 1788 179 0 10 chr6 25972609 25972917 -156442325 - AluSx SINE Alu -7 305 1 1599 158 8 8 chr6 25972964 25973229 -156442013 - AluJb SINE Alu -8 304 40 368 329 7 28 chr6 25973232 25973375 -156441867 - L1MC/D LINE L1 -2081 5727 5588 2221 120 0 0 chr6 25973399 25973698 -156441544 + AluSx SINE Alu 1 299 -13 231 277 36 12 chr6 25975102 25975185 -156440057 + MIR SINE MIR 178 262 0 892 194 10 53 chr6 25975244 25975382 -156439860 + MARNA DNA Mariner 246 374 -212 2130 145 0 0 chr6 25975382 25975678 -156439564 + AluSx SINE Alu 1 296 -16 892 194 10 53 chr6 25975678 25975745 -156439497 + MARNA DNA Mariner 374 442 -144 309 278 52 52 chr6 25975975 25976090 -156439152 + L2 LINE L2 3158 3272 0 2528 76 58 3 chr6 25976646 25976989 -156438253 + L1PA12 LINE L1 5807 6168 0 313 47 0 0 chr6 25977153 25977196 -156438046 - L1PA15 LINE L1 -8 6157 6115 839 73 122 79 chr6 25977196 25977360 -156437882 - L1PA14 LINE L1 -129 6032 5862 2385 105 0 0 chr6 25977361 25977665 -156437577 - AluSx SINE Alu -8 304 1 417 282 134 38 chr6 25981949 25982158 -156433084 - MIR SINE MIR -32 230 2 243 310 69 0 chr6 25982622 25982709 -156432533 + MER119 DNA MER1_type 1 93 -490 438 119 0 0 chr6 25982753 25982812 -156432430 + MER119 DNA MER1_type 523 581 -2 270 289 19 10 chr6 25982962 25983066 -156432176 - L3 LINE CR1 -126 1451 1347 2005 135 3 3 chr6 25983068 25983364 -156431878 - AluSx SINE Alu -16 296 1 1510 203 50 0 chr6 25983389 25983729 -156431513 + L1MC4 LINE L1 7682 8038 -4 849 254 171 28 chr6 25984268 25984768 -156430474 + L2 LINE L2 2732 3312 -1 235 345 35 0 chr6 25985125 25985212 -156430030 - L2 LINE L2 -537 2777 2688 523 237 10 0 chr6 25985407 25985504 -156429738 - MER2 DNA MER2_type -247 98 1 409 330 73 6 chr6 25985556 25985769 -156429473 + MIR SINE MIR 5 236 -26 2344 81 0 19 chr6 25985969 25986276 -156428966 - AluY SINE Alu -10 301 1 2298 103 0 0 chr6 25986322 25986614 -156428628 - AluSx SINE Alu -20 292 1 25 51 0 0 chr6 25986945 25986984 -156428258 + AT_rich Low_complexity Low_complexity 1 39 0 2338 94 3 0 chr6 25987261 25987569 -156427673 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 25988954 25988975 -156426267 + AT_rich Low_complexity Low_complexity 1 21 0 1630 163 47 11 chr6 25989010 25989287 -156425955 + AluJb SINE Alu 1 287 -25 504 137 0 0 chr6 25989307 25989380 -156425862 + AluJ/FRAM SINE Alu 215 287 -25 341 269 108 0 chr6 25989747 25989840 -156425402 + MIR SINE MIR 49 151 -111 5319 53 3 11 chr6 25990453 25991088 -156424154 + SVA Other Other 757 1386 0 270 229 0 0 chr6 25993034 25993104 -156422138 + (TA)n Simple_repeat Simple_repeat 2 71 0 195 69 0 0 chr6 25993346 25993375 -156421867 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2280 86 0 0 chr6 25993394 25993672 -156421570 + AluSc SINE Alu 1 278 -31 22 0 0 0 chr6 25993683 25993705 -156421537 + AT_rich Low_complexity Low_complexity 1 22 0 2371 81 0 7 chr6 25994018 25994316 -156420926 - AluSx SINE Alu -8 304 9 251 255 71 10 chr6 25994340 25994438 -156420804 - L1MC4 LINE L1 -26 8016 7913 727 211 0 0 chr6 25994558 25994691 -156420551 - FLAM_A SINE Alu 0 133 1 2129 99 39 0 chr6 25994952 25995234 -156420008 + AluSp SINE Alu 1 293 -20 27 62 0 0 chr6 25998241 25998289 -156416953 + AT_rich Low_complexity Low_complexity 1 48 0 2303 99 0 3 chr6 25998442 25998735 -156416507 - AluSx SINE Alu -20 292 1 862 215 54 5 chr6 25998891 25999096 -156416146 - MIR SINE MIR -18 244 30 2495 77 0 0 chr6 25999105 25999404 -156415838 - AluY SINE Alu -12 299 1 373 210 58 94 chr6 25999435 25999573 -156415669 - L1MC4 LINE L1 -24 8018 5945 25 0 0 0 chr6 26000155 26000180 -156415062 + AT_rich Low_complexity Low_complexity 1 25 0 749 181 0 0 chr6 26001510 26001643 -156413599 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr6 26002602 26002625 -156412617 + AT_rich Low_complexity Low_complexity 1 23 0 2029 186 123 90 chr6 26002630 26003330 -156411912 - LTR48 LTR ERV1 0 787 59 1661 130 6 102 chr6 26003330 26003653 -156411589 + AluSx SINE Alu 3 294 -18 2029 186 123 90 chr6 26003653 26003711 -156411531 - LTR48 LTR ERV1 -728 59 4 451 200 47 33 chr6 26003807 26003957 -156411285 - MER104 DNA Tc2 0 180 29 6881 115 5 9 chr6 26004209 26005182 -156410060 + LTR5 LTR ERVK 1 969 0 654 265 185 45 chr6 26005457 26005835 -156409407 - L2 LINE L2 -504 2810 2380 2574 62 0 0 chr6 26005835 26006142 -156409100 - AluY SINE Alu -4 307 1 312 272 28 28 chr6 26006207 26006387 -156408855 + L1ME4a LINE L1 5942 6121 0 1807 100 115 7 chr6 26006410 26006679 -156408563 + AluSc SINE Alu 5 302 -7 1932 153 4 0 chr6 26006806 26007087 -156408155 + AluJo SINE Alu 1 282 -30 305 231 11 124 chr6 26008579 26008765 -156406477 + L2 LINE L2 2927 3091 -181 243 243 14 27 chr6 26009039 26009113 -156406129 + L2 LINE L2 3200 3272 0 2266 91 14 3 chr6 26009617 26009914 -156405328 - AluY SINE Alu -11 300 1 1679 170 42 10 chr6 26011006 26011295 -156403947 + AluJo SINE Alu 2 299 -13 222 37 0 0 chr6 26011414 26011441 -156403801 + (A)n Simple_repeat Simple_repeat 1 27 0 744 204 0 0 chr6 26011448 26011580 -156403662 + FLAM_A SINE Alu 2 133 0 656 186 0 0 chr6 26011764 26011861 -156403381 + MER2 DNA MER2_type 1 97 -248 2105 125 0 20 chr6 26011861 26012165 -156403077 + AluSx SINE Alu 1 298 -14 1092 273 87 3 chr6 26012208 26012508 -156402734 + MER119 DNA MER1_type 1 325 -258 626 243 20 7 chr6 26012540 26012692 -156402550 + MER45A DNA AcHobo 16 169 -9 238 270 0 0 chr6 26012707 26012781 -156402461 + L1MD2 LINE L1 6154 6227 -132 340 146 48 0 chr6 26012786 26012889 -156402353 + (TA)n Simple_repeat Simple_repeat 2 109 0 21 95 0 0 chr6 26012920 26012983 -156402259 + AT_rich Low_complexity Low_complexity 1 63 0 1453 221 7 4 chr6 26012983 26013263 -156401979 - AluJo SINE Alu -31 281 1 2529 85 0 0 chr6 26013265 26013571 -156401671 - AluY SINE Alu -5 306 1 885 143 0 0 chr6 26013582 26013708 -156401534 - FLAM_C SINE Alu -17 126 1 244 204 19 0 chr6 26013739 26013793 -156401449 + MER119 DNA MER1_type 528 582 -1 3535 102 10 12 chr6 26013900 26014401 -156400841 - LTR3b LTR ERVK 0 500 1 2021 128 3 13 chr6 26014495 26014801 -156400441 - AluSx SINE Alu -9 303 1 852 277 57 14 chr6 26014854 26015208 -156400034 + L1ME4a LINE L1 5556 5924 -197 246 203 51 13 chr6 26015224 26015303 -156399939 + L1ME4a LINE L1 6030 6111 -10 21 0 0 0 chr6 26015319 26015340 -156399902 + AT_rich Low_complexity Low_complexity 1 21 0 1693 161 17 3 chr6 26015400 26015691 -156399551 + AluJb SINE Alu 5 299 -13 2213 110 3 0 chr6 26015829 26016152 -156399090 - AluSx SINE Alu 0 324 1 303 319 14 36 chr6 26016152 26016290 -156398952 - MIR SINE MIR -96 166 32 977 159 24 6 chr6 26016920 26017090 -156398152 + MLT1B LTR MaLR 1 173 -217 804 168 114 73 chr6 26017090 26017310 -156397932 + AluJo SINE Alu 49 277 -35 708 114 179 29 chr6 26017336 26017476 -156397766 + MLT1B LTR MaLR 165 325 -65 2150 105 10 42 chr6 26018050 26018387 -156396855 + AluSx SINE Alu 1 327 0 632 238 0 0 chr6 26019127 26019253 -156395989 + FLAM_C SINE Alu 3 128 -15 222 365 41 7 chr6 26019940 26020085 -156395157 - L2 LINE L2 -337 2976 2827 2175 98 40 3 chr6 26021057 26021354 -156393888 + AluSx SINE Alu 1 308 -4 237 200 0 125 chr6 26021385 26021431 -156393811 - MIR SINE MIR 0 262 212 789 170 17 139 chr6 26021431 26021524 -156393718 - MER3 DNA MER1_type -4 205 102 2240 95 18 0 chr6 26021524 26021808 -156393434 + AluSq SINE Alu 3 291 -22 789 170 17 139 chr6 26021808 26021819 -156393423 - MER3 DNA MER1_type -107 102 91 198 0 0 0 chr6 26021819 26021841 -156393401 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 789 170 17 139 chr6 26021841 26021965 -156393277 - MER3 DNA MER1_type -118 91 4 237 200 0 125 chr6 26021965 26021998 -156393244 - MIR SINE MIR -50 212 193 2279 95 23 0 chr6 26022154 26022458 -156392784 - AluSp SINE Alu -2 311 1 2033 153 7 0 chr6 26023316 26023611 -156391631 + AluSx SINE Alu 1 297 -15 583 234 13 32 chr6 26024000 26024158 -156391084 + L1MD3 LINE L1 7797 7951 -44 256 118 53 105 chr6 26024261 26024307 -156390935 + L1MD3 LINE L1 7924 7966 -29 2192 108 0 7 chr6 26024307 26024602 -156390640 + AluSx SINE Alu 1 293 -19 256 118 53 105 chr6 26024602 26024631 -156390611 + L1MD3 LINE L1 7966 7995 0 216 0 0 0 chr6 26024653 26024677 -156390565 + (TG)n Simple_repeat Simple_repeat 2 25 0 1804 114 0 0 chr6 26025800 26026037 -156389205 + AluSq SINE Alu 1 237 -76 21 0 0 0 chr6 26026488 26026509 -156388733 + AT_rich Low_complexity Low_complexity 1 21 0 958 120 0 0 chr6 26026847 26026980 -156388262 + FLAM_C SINE Alu 1 133 0 2055 118 11 0 chr6 26027071 26027380 -156387862 + AluSx SINE Alu 1 312 0 2030 111 7 7 chr6 26027844 26028123 -156387119 - AluSx SINE Alu -31 281 3 1910 163 0 3 chr6 26028158 26028452 -156386790 + AluJb SINE Alu 7 299 -13 2168 102 28 0 chr6 26028555 26028839 -156386403 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26029309 26029379 -156385863 - L2 LINE L2 -2 3270 3201 521 226 8 68 chr6 26029478 26029552 -156385690 - MER45A DNA AcHobo -1403 178 114 2384 85 3 0 chr6 26029552 26029846 -156385396 + AluSx SINE Alu 1 295 -17 521 226 8 68 chr6 26029846 26029904 -156385338 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26030116 26030171 -156385071 + L2 LINE L2 2997 3055 -217 1798 167 10 10 chr6 26030205 26030504 -156384738 - AluJb SINE Alu -9 303 5 1544 136 5 0 chr6 26030890 26031110 -156384132 - AluJo SINE Alu -52 260 40 2277 106 0 10 chr6 26031691 26031992 -156383250 - AluSx SINE Alu -14 298 1 376 241 48 0 chr6 26032722 26032805 -156382437 + L2 LINE L2 3168 3254 -18 23 78 0 0 chr6 26032833 26032884 -156382358 + AT_rich Low_complexity Low_complexity 1 51 0 1953 156 0 7 chr6 26033082 26033384 -156381858 - AluJo SINE Alu -12 300 1 515 299 86 30 chr6 26033386 26033620 -156381622 - MIR SINE MIR -5 257 11 644 262 77 0 chr6 26035206 26035389 -156379853 - MIR SINE MIR 0 262 66 2229 127 0 13 chr6 26035956 26036272 -156378970 + AluSx SINE Alu 1 312 0 1808 157 7 7 chr6 26036303 26036603 -156378639 + AluJb SINE Alu 1 300 -12 2069 137 0 10 chr6 26037108 26037415 -156377827 + AluSx SINE Alu 1 304 -8 636 289 11 16 chr6 26038388 26038578 -156376664 - MIR SINE MIR -6 256 68 341 122 20 0 chr6 26088655 26088733 -156326509 + Alu SINE Alu 234 312 0 2030 111 7 7 chr6 26089197 26089476 -156325766 - AluSx SINE Alu -31 281 3 1944 160 0 3 chr6 26089511 26089805 -156325437 + AluJb SINE Alu 7 299 -13 2166 106 28 0 chr6 26089908 26090192 -156325050 + AluSg SINE Alu 1 292 -18 251 314 0 0 chr6 26090662 26090732 -156324510 - L2 LINE L2 -2 3270 3201 517 221 8 69 chr6 26090832 26090904 -156324338 - MER45A DNA AcHobo -1405 176 114 2311 99 3 0 chr6 26090904 26091198 -156324044 + AluSx SINE Alu 1 295 -17 517 221 8 69 chr6 26091198 26091256 -156323986 - MER45A DNA AcHobo -1467 114 54 227 182 73 0 chr6 26091468 26091523 -156323719 + L2 LINE L2 2997 3055 -217 1878 168 0 10 chr6 26091557 26091860 -156323382 - AluJb SINE Alu -8 304 5 1544 136 5 0 chr6 26092246 26092466 -156322776 - AluJo SINE Alu -52 260 40 2301 106 0 10 chr6 26093047 26093350 -156321892 - AluSx SINE Alu -12 300 1 343 232 0 0 chr6 26094080 26094149 -156321093 + L2 LINE L2 3168 3236 -36 27 100 0 0 chr6 26094152 26094242 -156321000 + AT_rich Low_complexity Low_complexity 1 90 0 1982 152 0 7 chr6 26094440 26094742 -156320500 - AluJo SINE Alu -12 300 1 470 295 86 30 chr6 26094744 26094978 -156320264 - MIR SINE MIR -5 257 11 623 258 75 0 chr6 26096467 26096653 -156318589 - MIR SINE MIR 0 262 63 2274 120 0 13 chr6 26097218 26097534 -156317708 + AluSx SINE Alu 1 312 0 1826 157 7 7 chr6 26097565 26097865 -156317377 + AluJb SINE Alu 1 300 -12 2088 137 0 10 chr6 26098370 26098677 -156316565 + AluSx SINE Alu 1 304 -8 571 295 11 16 chr6 26099651 26099841 -156315401 - MIR SINE MIR -6 256 68 1337 212 116 59 chr6 26100083 26100201 -156315041 + MER4A LTR ERV1 5 115 -549 2478 83 3 0 chr6 26100201 26100513 -156314729 - AluSp SINE Alu 0 313 1 1337 212 116 59 chr6 26100513 26100852 -156314390 + MER4A LTR ERV1 115 488 -176 1276 127 0 0 chr6 26100855 26101028 -156314214 - AluSg/x SINE Alu -6 304 132 371 154 138 0 chr6 26101034 26101099 -156314143 - tRNA-Ile-ATT tRNA tRNA -3 74 1 1214 137 0 26 chr6 26101105 26101295 -156313947 + MER4B LTR ERV1 426 610 0 6218 4 0 0 chr6 26101420 26102096 -156313146 + L1PA2 LINE L1 5477 6152 -3 277 298 48 30 chr6 26102225 26102393 -156312849 + L1ME LINE L1 49 219 -5900 459 110 0 73 chr6 26102433 26102515 -156312727 - Alu SINE Alu -8 302 227 565 252 55 39 chr6 26102536 26102847 -156312395 + L1ME LINE L1 2277 2589 -3540 2302 117 0 0 chr6 26102899 26103206 -156312036 - AluSq SINE Alu -6 307 1 771 278 51 64 chr6 26103206 26103525 -156311717 + L1ME LINE L1 4521 4832 -1297 1297 166 136 11 chr6 26103525 26103790 -156311452 + AluJb SINE Alu 5 302 0 771 278 51 64 chr6 26103790 26103998 -156311244 + L1ME LINE L1 4832 5041 -1088 1168 118 0 18 chr6 26104025 26104195 -156311047 - FRAM SINE Alu -12 164 1 650 278 47 18 chr6 26104200 26104676 -156310566 + L1ME LINE L1 5069 5558 -595 2437 78 0 0 chr6 26105088 26105383 -156309859 - AluSq SINE Alu -18 295 1 189 0 0 0 chr6 26105386 26105407 -156309835 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr6 26106117 26106150 -156309092 + AT_rich Low_complexity Low_complexity 1 33 0 2358 94 0 16 chr6 26106150 26106468 -156308774 + AluSq SINE Alu 1 313 0 342 45 0 0 chr6 26106471 26106515 -156308727 + (CA)n Simple_repeat Simple_repeat 1 44 0 2255 109 0 26 chr6 26106967 26107278 -156307964 + AluSc SINE Alu 1 303 -6 1222 119 0 0 chr6 26107701 26107861 -156307381 + AluSg/x SINE Alu 137 296 -16 180 71 0 0 chr6 26107862 26107870 -156307372 + (CA)n Simple_repeat Simple_repeat 1 8 -20 2373 72 0 44 chr6 26107870 26108189 -156307053 + AluY SINE Alu 1 305 -6 180 71 0 0 chr6 26108189 26108208 -156307034 + (CA)n Simple_repeat Simple_repeat 7 28 0 186 358 15 0 chr6 26108322 26108389 -156306853 - L2 LINE L2 -14 3258 3191 1838 143 3 59 chr6 26109745 26110067 -156305175 + AluJo SINE Alu 2 305 -7 979 255 214 21 chr6 26110794 26111229 -156304013 + LTR33 LTR ERVL 2 520 -1 3111 75 82 7 chr6 26111255 26111707 -156303535 + LTR19A LTR ERV1 1 486 0 994 123 45 7 chr6 26112639 26112794 -156302448 - AluSq SINE Alu -16 297 137 247 235 0 0 chr6 26112846 26112897 -156302345 + (CACG)n Simple_repeat Simple_repeat 2 52 0 339 306 48 43 chr6 26113408 26113617 -156301625 + LTR67 LTR ERVL 348 557 0 22 0 0 0 chr6 26113651 26113673 -156301569 + AT_rich Low_complexity Low_complexity 1 22 0 332 179 0 15 chr6 26114105 26114172 -156301070 + MLT1K LTR MaLR 496 561 -27 294 246 64 18 chr6 26114175 26114285 -156300957 - MIR SINE MIR 0 262 148 1723 106 4 31 chr6 26114405 26114576 -156300666 - AluSx SINE Alu -9 303 140 2346 119 0 0 chr6 26114576 26114886 -156300356 - AluSx SINE Alu 0 312 3 1723 106 4 31 chr6 26114886 26114970 -156300272 - AluSx SINE Alu -172 140 55 1617 181 51 0 chr6 26114984 26115260 -156299982 + AluJo SINE Alu 1 290 -22 317 228 66 49 chr6 26115271 26115353 -156299889 + L1 LINE L1 4735 4785 -1361 1644 175 0 0 chr6 26115353 26115610 -156299632 + AluSx SINE Alu 1 257 -55 317 228 66 49 chr6 26115610 26115704 -156299538 + L1 LINE L1 4785 4876 -1270 1913 114 44 0 chr6 26115704 26115975 -156299267 + AluSx SINE Alu 1 283 -29 408 188 10 31 chr6 26115978 26116074 -156299168 + L1MC4 LINE L1 6514 6607 -1435 980 128 0 0 chr6 26116075 26116208 -156299034 - AluSg/x SINE Alu -36 274 142 2210 81 0 18 chr6 26116208 26116522 -156298720 - AluY SINE Alu 0 309 1 1942 145 3 17 chr6 26116527 26116823 -156298419 - AluSx SINE Alu -20 292 1 963 127 0 8 chr6 26117563 26117697 -156297545 + FLAM_C SINE Alu 1 133 -10 397 125 0 0 chr6 26117700 26117756 -156297486 + U6 snRNA snRNA 1 56 -51 2344 99 3 0 chr6 26117982 26118276 -156296966 - AluSp SINE Alu -18 295 1 367 298 99 6 chr6 26118649 26118830 -156296412 + MIR SINE MIR 51 248 -14 2284 87 0 3 chr6 26118852 26119140 -156296102 + AluSx SINE Alu 11 297 -15 432 212 96 48 chr6 26119923 26120069 -156295173 - MIR3 SINE MIR -11 197 45 295 295 0 0 chr6 26120200 26120278 -156294964 + MIR3 SINE MIR 121 198 -10 2478 59 0 16 chr6 26120433 26120738 -156294504 + AluY SINE Alu 1 300 -11 1121 110 37 21 chr6 26120877 26121068 -156294174 + L1MA9 LINE L1 6119 6312 0 2259 125 0 3 chr6 26122776 26123089 -156292153 + AluSx SINE Alu 1 312 0 652 246 77 27 chr6 26123246 26123466 -156291776 + Charlie8 DNA MER1_type 46 276 -2141 1728 158 27 31 chr6 26123727 26124019 -156291223 + AluSx SINE Alu 4 294 -18 2426 89 0 13 chr6 26124530 26124846 -156290396 + AluSx SINE Alu 1 312 0 821 175 142 57 chr6 26125112 26125358 -156289884 + ORSL DNA AcHobo 2 268 -7 2010 120 0 7 chr6 26125522 26125814 -156289428 + AluSx SINE Alu 22 311 -1 181 0 69 0 chr6 26125821 26125850 -156289392 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 231 314 218 0 chr6 26126547 26126671 -156288571 - MIR SINE MIR -81 181 31 211 226 0 32 chr6 26127369 26127431 -156287811 + C-rich Low_complexity Low_complexity 4 63 0 422 218 21 115 chr6 26128462 26128696 -156286546 - L2 LINE L2 0 3313 3102 1415 185 12 52 chr6 26128747 26129245 -156285997 - MLT1B LTR MaLR -2 465 1 617 133 0 0 chr6 26129296 26129386 -156285856 - LTR12 LTR ERV1 0 714 625 317 146 58 87 chr6 26129386 26129489 -156285753 - LTR30 LTR ERV1 -92 614 378 822 167 89 45 chr6 26129591 26129882 -156285360 - LTR12 LTR ERV1 -481 1683 62 277 211 0 0 chr6 26129882 26129934 -156285308 - LTR30 LTR ERV1 -670 52 1 2185 249 73 19 chr6 26129953 26130679 -156284563 - L2 LINE L2 -382 2932 2168 2133 80 6 61 chr6 26130989 26131124 -156284118 + AluSx SINE Alu 1 142 -170 2346 93 0 10 chr6 26131124 26131434 -156283808 + AluSx SINE Alu 1 307 -5 2133 80 6 61 chr6 26131434 26131609 -156283633 + AluSx SINE Alu 142 294 -18 21 0 0 0 chr6 26131762 26131783 -156283459 + AT_rich Low_complexity Low_complexity 1 21 0 1533 197 3 58 chr6 26131787 26131967 -156283275 - AluJo SINE Alu 0 312 157 2316 67 30 7 chr6 26131967 26132266 -156282976 - AluY SINE Alu -5 306 1 1533 197 3 58 chr6 26132266 26132415 -156282827 - AluJo SINE Alu -155 157 1 692 99 0 0 chr6 26132471 26132572 -156282670 - L1MB3 LINE L1 0 6183 6083 908 103 0 15 chr6 26132673 26132809 -156282433 + L1MB3 LINE L1 5840 5973 -210 863 194 0 0 chr6 26132809 26132955 -156282287 + FRAM SINE Alu 2 182 0 316 0 0 0 chr6 26132955 26132990 -156282252 + (TAA)n Simple_repeat Simple_repeat 2 180 0 232 164 60 134 chr6 26133163 26133230 -156282012 + AluJo SINE Alu 87 148 -154 864 198 0 19 chr6 26133861 26134018 -156281224 + AluJo SINE Alu 129 282 -30 32 26 0 0 chr6 26134018 26134057 -156281185 + AT_rich Low_complexity Low_complexity 1 39 0 266 170 0 0 chr6 26134146 26134199 -156281043 - MLT2B1 LTR ERVL -4 516 464 339 179 0 0 chr6 26134203 26134270 -156280972 + (TG)n Simple_repeat Simple_repeat 2 68 0 2175 178 125 19 chr6 26134286 26134718 -156280524 - MLT2B1 LTR ERVL -42 478 1 559 265 65 20 chr6 26136401 26136601 -156278641 + MIR SINE MIR 39 247 -15 1246 195 0 0 chr6 26136725 26136935 -156278307 + MER58A DNA MER1_type 15 224 0 484 265 78 43 chr6 26137635 26137984 -156277258 + L2 LINE L2 2712 3069 -244 2214 110 3 0 chr6 26137994 26138286 -156276956 + AluSx SINE Alu 1 293 -19 353 237 0 126 chr6 26138365 26138500 -156276742 - L1MC4a LINE L1 -1149 6659 6542 21 0 0 0 chr6 26138505 26138526 -156276716 + AT_rich Low_complexity Low_complexity 1 21 0 2448 81 7 0 chr6 26138551 26138858 -156276384 - AluSg1 SINE Alu 0 309 1 26 30 0 0 chr6 26138944 26138977 -156276265 + AT_rich Low_complexity Low_complexity 1 33 0 1573 141 37 30 chr6 26139035 26139334 -156275908 - L1MC3 LINE L1 0 7785 7485 512 287 60 76 chr6 26139544 26140060 -156275182 - HAL1b LINE L1 -769 579 72 6265 86 15 8 chr6 26140097 26140390 -156274852 - L1PB1 LINE L1 -2 6149 5860 2399 95 3 0 chr6 26140390 26140696 -156274546 + AluSc SINE Alu 1 307 -2 6265 86 15 8 chr6 26140696 26141701 -156273541 - L1PB1 LINE L1 -291 5860 4877 9301 156 45 5 chr6 26141701 26143178 -156272064 - L1PBa LINE L1 -2548 4314 2897 180 0 0 0 chr6 26143178 26143198 -156272044 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9301 156 45 5 chr6 26143198 26144524 -156270718 - L1PBa LINE L1 -3965 2897 1392 929 220 5 0 chr6 26144521 26144712 -156270530 - L1PBa LINE L1 -6666 197 6 * 2061 134 0 0 chr6 26144985 26145297 -156269945 - AluSq SINE Alu 0 312 1 1806 141 61 17 chr6 26145375 26145672 -156269570 - AluJb SINE Alu -2 310 1 204 245 104 28 chr6 26146435 26146541 -156268701 + MIR SINE MIR 20 133 -129 2031 122 37 0 chr6 26146764 26147059 -156268183 + AluSx SINE Alu 1 306 -6 840 194 0 0 chr6 26147075 26147243 -156267999 - AluJb SINE Alu 0 305 138 210 118 0 0 chr6 26147395 26147429 -156267813 + (T)n Simple_repeat Simple_repeat 1 34 0 1970 136 14 0 chr6 26147750 26148036 -156267206 + AluSx SINE Alu 1 290 -22 2552 53 0 28 chr6 26148462 26148782 -156266460 + AluY SINE Alu 1 311 0 1794 154 59 3 chr6 26148967 26149253 -156265989 + AluJb SINE Alu 3 304 -8 1942 139 17 0 chr6 26149325 26149613 -156265629 - AluSx SINE Alu -19 293 1 365 118 9 173 chr6 26150407 26150517 -156264725 + LTR9 LTR ERV1 438 529 -83 26 50 0 0 chr6 26150862 26150902 -156264340 + AT_rich Low_complexity Low_complexity 1 40 0 494 91 0 0 chr6 26151389 26151466 -156263776 - Alu SINE Alu -2 310 234 545 263 20 40 chr6 26151466 26151590 -156263652 + L1ME4a LINE L1 5703 5823 -298 2173 133 0 0 chr6 26151590 26151891 -156263351 + AluSx SINE Alu 1 301 -11 545 263 20 40 chr6 26151891 26151964 -156263278 + L1ME4a LINE L1 5823 5896 -225 284 261 44 33 chr6 26152018 26152198 -156263044 + L1ME4a LINE L1 5882 6063 -58 332 212 61 38 chr6 26152361 26152377 -156262865 - L1MC4a LINE L1 -1800 6008 5994 694 203 0 15 chr6 26152377 26152510 -156262732 - FLAM_A SINE Alu -2 131 1 332 212 61 38 chr6 26152510 26152625 -156262617 - L1MC4a LINE L1 -1814 5994 5874 512 120 0 11 chr6 26152877 26152969 -156262273 + (TG)n Simple_repeat Simple_repeat 2 92 0 327 232 22 103 chr6 26153542 26153727 -156261515 - MIR3 SINE MIR -9 199 30 1821 143 17 17 chr6 26154044 26154165 -156261077 + AluJb SINE Alu 1 121 -191 2121 97 73 0 chr6 26154165 26154453 -156260789 - AluSx SINE Alu -3 309 1 1821 143 17 17 chr6 26154453 26154625 -156260617 + AluJb SINE Alu 120 294 -18 234 0 0 0 chr6 26154786 26154812 -156260430 + (TG)n Simple_repeat Simple_repeat 2 27 0 1217 142 18 36 chr6 26155313 26155532 -156259710 + L1MA5 LINE L1 6001 6215 -85 2182 102 7 3 chr6 26156284 26156587 -156258655 - AluSx SINE Alu -3 309 6 304 311 15 8 chr6 26157125 26157257 -156257985 - MER5B DNA MER1_type -44 134 2 23 0 0 0 chr6 26157540 26157563 -156257679 + AT_rich Low_complexity Low_complexity 1 23 0 1676 131 3 53 chr6 26157724 26158006 -156257236 + AluSq SINE Alu 1 268 -45 405 276 47 102 chr6 26158532 26159130 -156256112 + HAL1 LINE L1 810 1374 -1133 415 89 48 16 chr6 26159134 26159258 -156255984 + (TA)n Simple_repeat Simple_repeat 2 129 0 302 160 0 0 chr6 26159261 26159311 -156255931 + L1MC4 LINE L1 6654 6703 -1339 463 276 131 67 chr6 26159318 26159599 -156255643 + HAL1 LINE L1 1400 1722 -785 2305 101 0 0 chr6 26159599 26159896 -156255346 + AluSg SINE Alu 1 297 -13 463 276 131 67 chr6 26159896 26160064 -156255178 + HAL1 LINE L1 1722 1878 -629 2103 118 14 3 chr6 26160672 26160968 -156254274 - AluSq SINE Alu -14 299 1 1573 103 121 40 chr6 26161010 26161282 -156253960 - AluSg1 SINE Alu -13 296 3 256 256 128 96 chr6 26161373 26161462 -156253780 - HAL1 LINE L1 -872 1635 1550 2352 119 0 0 chr6 26161462 26161774 -156253468 - AluSx SINE Alu 0 312 1 256 256 128 96 chr6 26161774 26161978 -156253264 - HAL1 LINE L1 -957 1550 1319 2297 96 7 0 chr6 26161978 26162279 -156252963 - AluSx SINE Alu -9 303 1 256 256 128 96 chr6 26162279 26162444 -156252798 - HAL1 LINE L1 -1188 1319 1161 232 326 65 11 chr6 26163644 26163736 -156251506 + MIR SINE MIR 9 105 -157 2364 78 0 7 chr6 26167839 26168132 -156247110 + AluY SINE Alu 1 291 -20 1981 180 24 3 chr6 26168503 26168837 -156246405 + MER58B DNA MER1_type 1 341 0 1186 192 0 14 chr6 26169845 26170059 -156245183 - AluJo SINE Alu -101 211 1 9530 107 65 12 chr6 26170138 26170921 -156244321 - Tigger3(Golem) DNA MER2_type 0 3029 2289 2193 122 0 0 chr6 26170921 26171217 -156244025 + AluJb SINE Alu 1 296 -16 9530 107 65 12 chr6 26171217 26171915 -156243327 - Tigger3(Golem) DNA MER2_type -740 2289 1470 2959 143 69 20 chr6 26171911 26172108 -156243134 - Tigger3(Golem) DNA MER2_type -2465 564 378 * 1911 150 0 14 chr6 26172108 26172423 -156242819 - AluJb SINE Alu 0 311 1 2959 143 69 20 chr6 26172423 26172762 -156242480 - Tigger3(Golem) DNA MER2_type -2651 378 1 996 203 61 71 chr6 26173055 26173381 -156241861 - L1MD2 LINE L1 -10 6349 6027 1475 126 25 107 chr6 26173496 26173814 -156241428 - MLT1B LTR MaLR -91 299 13 2162 115 0 0 chr6 26173823 26174110 -156241132 + AluSx SINE Alu 1 287 -25 1935 153 10 7 chr6 26174165 26174465 -156240777 + AluSx SINE Alu 1 301 -11 2603 141 12 73 chr6 26174666 26174755 -156240487 + MER101 LTR ERV1 1 94 -380 1535 142 78 25 chr6 26174755 26175036 -156240206 + AluJb SINE Alu 1 296 -16 2603 141 12 73 chr6 26175036 26175451 -156239791 + MER101 LTR ERV1 94 474 0 551 223 208 20 chr6 26175534 26175736 -156239506 + L1ME1 LINE L1 5919 6158 -8 * 573 190 112 33 chr6 26175567 26175741 -156239501 + L1MA10 LINE L1 5970 6129 -188 1669 164 24 13 chr6 26175741 26176039 -156239203 - AluJb SINE Alu -11 301 1 573 190 112 33 chr6 26176039 26176052 -156239190 + L1MA10 LINE L1 6129 6317 0 1256 191 82 21 chr6 26176278 26176560 -156238682 - MER58B DNA MER1_type -6 335 37 416 269 134 19 chr6 26177476 26177692 -156237550 + MIR SINE MIR 12 252 -10 621 298 18 22 chr6 26179814 26180042 -156235200 + MIR SINE MIR 24 250 -12 976 214 0 0 chr6 26180191 26180369 -156234873 + FRAM SINE Alu 1 175 -1 2724 140 17 9 chr6 26180492 26180914 -156234328 - MER61B LTR ERV1 0 425 1 1415 168 150 34 chr6 26181215 26181347 -156233895 + MLT1A1 LTR MaLR 1 116 -249 2232 114 0 13 chr6 26181347 26181653 -156233589 + AluSx SINE Alu 1 302 -10 1415 168 150 34 chr6 26181653 26181847 -156233395 + MLT1A1 LTR MaLR 116 365 0 667 276 30 0 chr6 26181882 26182081 -156233161 + MIR SINE MIR 58 262 0 243 250 80 20 chr6 26182543 26182643 -156232599 + L2 LINE L2 3142 3247 -25 1799 115 51 34 chr6 26183286 26183581 -156231661 - AluSx SINE Alu -12 300 1 602 255 37 30 chr6 26184493 26184696 -156230546 + MIR SINE MIR 59 262 0 2163 115 3 0 chr6 26184922 26185210 -156230032 - AluSp SINE Alu -22 291 3 226 77 19 39 chr6 26185570 26185602 -156229640 + LTR66 LTR ERVL 391 423 -187 402 21 0 0 chr6 26185602 26185649 -156229593 + (CA)n Simple_repeat Simple_repeat 2 48 0 226 77 19 39 chr6 26185649 26185668 -156229574 + LTR66 LTR ERVL 423 441 -169 * 3455 143 91 125 chr6 26185664 26186578 -156228664 + MER21A LTR ERV1 13 895 -36 2338 112 0 0 chr6 26187522 26187827 -156227415 + AluSx SINE Alu 1 305 -7 204 231 0 0 chr6 26188428 26188467 -156226775 + CT-rich Low_complexity Low_complexity 1 39 0 273 98 0 0 chr6 26188470 26188511 -156226731 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1077 193 177 4 chr6 26188519 26188773 -156226469 - AluJo SINE Alu -3 299 2 324 140 0 35 chr6 26188776 26188833 -156226409 - AluJo/FLAM SINE Alu -170 132 78 2002 96 0 0 chr6 26189270 26189520 -156225722 + AluSc SINE Alu 39 288 -21 1936 138 0 10 chr6 26189527 26189818 -156225424 + AluSx SINE Alu 1 288 -24 361 251 136 66 chr6 26189896 26190071 -156225171 + L1ME4a LINE L1 5681 5842 -279 698 183 0 23 chr6 26190071 26190202 -156225040 - FLAM_A SINE Alu -5 128 1 361 251 136 66 chr6 26190202 26190432 -156224810 + L1ME4a LINE L1 5842 6121 0 559 128 186 0 chr6 26190443 26190545 -156224697 + AluSq/x SINE Alu 2 122 -190 405 81 0 0 chr6 26190653 26190715 -156224527 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 485 200 25 58 chr6 26191812 26191932 -156223310 + MER21B LTR ERV1 384 499 -364 5031 147 30 1 chr6 26192016 26192830 -156222412 - L1MB7 LINE L1 -16 6168 5332 1359 185 37 63 chr6 26192830 26193239 -156222003 - MLT1C LTR MaLR 0 390 6 3234 199 24 30 chr6 26193248 26193867 -156221375 - L1MB7 LINE L1 -2192 3954 3340 1545 190 28 11 chr6 26193867 26194017 -156221225 - AluJb SINE Alu -23 289 130 2343 96 10 0 chr6 26194017 26194310 -156220932 - AluSx SINE Alu -16 296 1 1545 190 28 11 chr6 26194310 26194443 -156220799 - AluJb SINE Alu -182 130 1 3234 199 24 30 chr6 26194443 26194630 -156220612 - L1MB7 LINE L1 -2806 3340 3153 1971 168 3 0 chr6 26194865 26195175 -156220067 + AluSx SINE Alu 1 311 -1 2204 91 0 20 chr6 26197273 26197571 -156217671 + AluY SINE Alu 1 292 -19 2476 81 0 3 chr6 26197780 26198090 -156217152 + AluSc SINE Alu 1 309 0 205 290 0 0 chr6 26198103 26198171 -156217071 + MIR SINE MIR 86 143 -65 1268 240 25 21 chr6 26198462 26198787 -156216455 + MLT1A2 LTR MaLR 1 326 -48 877 164 8 0 chr6 26199527 26199661 -156215581 + AluJo SINE Alu 1 135 -177 1499 187 23 40 chr6 26199727 26200027 -156215215 + AluJo SINE Alu 1 295 -17 247 258 106 68 chr6 26200545 26200677 -156214565 - L2 LINE L2 0 3272 3136 317 325 43 34 chr6 26201639 26201848 -156213394 + MIR SINE MIR 6 216 -46 2428 55 7 0 chr6 26202615 26202904 -156212338 + AluY SINE Alu 1 291 -20 323 190 0 25 chr6 26202947 26203026 -156212216 + GA-rich Low_complexity Low_complexity 3 79 0 244 253 91 30 chr6 26203079 26203178 -156212064 + L2 LINE L2 3202 3306 -7 2095 137 3 7 chr6 26203216 26203515 -156211727 + AluSx SINE Alu 1 298 -14 884 141 0 15 chr6 26203567 26203702 -156211540 + FLAM_C SINE Alu 1 133 0 221 312 113 87 chr6 26203909 26204300 -156210942 + L2 LINE L2 2819 3219 -53 210 207 35 0 chr6 26205008 26205066 -156210176 + A-rich Low_complexity Low_complexity 4 63 0 1881 124 0 22 chr6 26205141 26205414 -156209828 + AluSx SINE Alu 1 267 -45 676 279 92 23 chr6 26205467 26205821 -156209421 + L1MC4a LINE L1 5519 5804 -360 23 0 0 0 chr6 26206070 26206093 -156209149 + AT_rich Low_complexity Low_complexity 1 23 0 2252 113 0 0 chr6 26206142 26206435 -156208807 + AluSg SINE Alu 1 293 -17 1920 166 0 10 chr6 26206460 26206756 -156208486 + AluJb SINE Alu 2 294 -18 189 0 0 0 chr6 26208625 26208646 -156206596 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1687 177 6 22 chr6 26208945 26209261 -156205981 + AluJb SINE Alu 1 311 -1 443 90 42 28 chr6 26211711 26211855 -156203387 + (TA)n Simple_repeat Simple_repeat 1 146 0 369 261 187 15 chr6 26212710 26212844 -156202398 + MER91A DNA MER1_type 19 175 -21 230 323 0 0 chr6 26213459 26213521 -156201721 - tRNA-Ser(Sec) tRNA tRNA -28 62 1 191 216 40 68 chr6 26213607 26213681 -156201561 - MER5A DNA MER1_type -115 74 3 2211 114 0 7 chr6 26214169 26214466 -156200776 + AluSx SINE Alu 1 295 -17 27 62 0 0 chr6 26214782 26214830 -156200412 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr6 26214944 26214980 -156200262 + AT_rich Low_complexity Low_complexity 1 36 0 1354 191 24 0 chr6 26265645 26265891 -156149351 + AluJo SINE Alu 59 310 -2 346 182 39 0 chr6 26265891 26265968 -156149274 + L1ME4a LINE L1 5387 5466 -2342 1830 168 3 13 chr6 26265985 26266300 -156148942 + AluJb SINE Alu 1 312 0 555 241 118 0 chr6 26266302 26266489 -156148753 + L1MC4a LINE L1 5723 5931 -1877 2053 58 0 4 chr6 26266610 26266869 -156148373 - AluY SINE Alu -8 303 46 28 0 0 0 chr6 26266924 26266952 -156148290 + AT_rich Low_complexity Low_complexity 1 28 0 267 147 156 64 chr6 26267104 26267213 -156148029 + MER53 DNA DNA 1 119 -70 337 271 226 28 chr6 26268329 26268510 -156146732 - MIR SINE MIR -44 218 2 354 266 73 0 chr6 26268732 26268841 -156146401 + L2 LINE L2 3197 3313 0 573 269 138 29 chr6 26269004 26269380 -156145862 + L1MC4a LINE L1 5698 6114 -1694 477 243 104 35 chr6 26269430 26269689 -156145553 - HAL1 LINE L1 -38 2469 2193 2333 60 14 0 chr6 26270185 26270467 -156144775 - AluSc SINE Alu -23 286 1 321 234 110 7 chr6 26270544 26270698 -156144544 - HAL1 LINE L1 -354 2153 1984 381 269 108 48 chr6 26270925 26271174 -156144068 + L1ME4a LINE L1 5653 5916 -205 1380 273 75 57 chr6 26271238 26271520 -156143722 + L1MEd LINE L1 72 347 -5772 2363 112 0 0 chr6 26271520 26271832 -156143410 + AluSx SINE Alu 1 312 0 1380 273 75 57 chr6 26271832 26272142 -156143100 + L1MEd LINE L1 347 650 -5469 1656 186 31 17 chr6 26272142 26272432 -156142810 + AluJo SINE Alu 1 294 -18 1380 273 75 57 chr6 26272432 26272778 -156142464 + L1MEd LINE L1 650 1028 -5091 1529 256 261 6 chr6 26272778 26273468 -156141774 - L2 LINE L2 -298 3015 2156 2303 109 0 0 chr6 26274122 26274416 -156140826 - AluSx SINE Alu -18 294 1 454 150 10 60 chr6 26274469 26274569 -156140673 - MLT1A2 LTR MaLR 0 390 296 609 189 28 35 chr6 26274577 26274720 -156140522 - MLT1A2 LTR MaLR -229 145 4 305 237 46 99 chr6 26276077 26276381 -156138861 + HAL1 LINE L1 812 1099 -1408 737 246 23 100 chr6 26276415 26276577 -156138665 - MIR SINE MIR -2 260 124 2141 122 17 7 chr6 26276577 26276872 -156138370 + AluSx SINE Alu 1 298 -14 737 246 23 100 chr6 26276872 26276969 -156138273 - MIR SINE MIR -138 124 21 204 97 0 0 chr6 26277036 26277067 -156138175 + (CA)n Simple_repeat Simple_repeat 2 32 0 503 294 63 28 chr6 26277067 26277461 -156137781 + HAL1 LINE L1 1155 1562 -945 1686 104 24 21 chr6 26277461 26277748 -156137494 + L1MA4 LINE L1 6007 6294 -6 428 315 42 67 chr6 26277776 26277828 -156137414 + HAL1 LINE L1 1534 1586 -921 1916 147 6 52 chr6 26277828 26278155 -156137087 - AluJb SINE Alu 0 312 1 428 315 42 67 chr6 26278155 26278340 -156136902 + HAL1 LINE L1 1586 1765 -742 232 326 22 11 chr6 26278512 26278601 -156136641 + LTR67 LTR ERVL 105 194 -363 835 200 0 0 chr6 26278753 26278908 -156136334 + FRAM SINE Alu 20 174 -2 389 232 40 47 chr6 26278978 26279182 -156136060 + L1M4 LINE L1 4906 5112 -1034 23 33 0 0 chr6 26279185 26279215 -156136027 + AT_rich Low_complexity Low_complexity 1 30 0 1883 199 45 22 chr6 26279244 26279752 -156135490 + L1MB7 LINE L1 3990 4509 -1637 1566 183 62 55 chr6 26279744 26280065 -156135177 + L1MB7 LINE L1 5729 6055 -129 * 2048 141 0 0 chr6 26280065 26280356 -156134886 + AluSx SINE Alu 1 291 -21 1566 183 62 55 chr6 26280356 26280487 -156134755 + L1MB7 LINE L1 6055 6184 0 388 248 97 9 chr6 26280488 26280601 -156134641 - L2 LINE L2 -16 3297 3175 248 364 45 38 chr6 26280784 26280916 -156134326 + L3 LINE CR1 245 377 -1200 326 192 0 13 chr6 26281261 26281339 -156133903 + CT-rich Low_complexity Low_complexity 2 78 0 180 111 0 0 chr6 26282329 26282356 -156132886 + (T)n Simple_repeat Simple_repeat 1 27 0 1587 210 65 22 chr6 26282380 26282828 -156132414 - MLT1C LTR MaLR 0 467 1 2437 80 0 0 chr6 26283055 26283356 -156131886 + AluY SINE Alu 7 307 -4 2060 119 28 0 chr6 26283720 26284006 -156131236 + AluSx SINE Alu 1 294 -18 2446 113 0 0 chr6 26284043 26284354 -156130888 + AluSx SINE Alu 2 312 0 240 111 0 0 chr6 26284491 26284527 -156130715 + (TA)n Simple_repeat Simple_repeat 1 36 0 267 267 7 53 chr6 26286703 26286853 -156128389 + L3 LINE CR1 1214 1356 -221 861 157 0 22 chr6 26287293 26287427 -156127815 + FLAM_C SINE Alu 1 131 -2 239 275 50 100 chr6 26287925 26288045 -156127197 - L2 LINE L2 -3 3269 3156 1738 207 167 45 chr6 26288384 26288535 -156126707 + MLT1E2 LTR MaLR 10 141 -485 3128 110 21 42 chr6 26288535 26288911 -156126331 - MER4C LTR ERV1 0 465 100 2066 127 23 16 chr6 26288911 26289219 -156126023 - AluSq SINE Alu -3 310 1 3128 110 21 42 chr6 26289219 26289315 -156125927 - MER4C LTR ERV1 -365 100 3 1738 207 167 45 chr6 26289315 26289713 -156125529 + MLT1E2 LTR MaLR 141 626 0 372 328 62 66 chr6 26289981 26290163 -156125079 + L1MEd LINE L1 99 281 -5838 8446 110 31 55 chr6 26290163 26291496 -156123746 + HSMAR2 DNA Mariner 1 1301 -1 372 328 62 66 chr6 26291496 26291569 -156123673 + L1MEd LINE L1 281 353 -5766 430 279 92 94 chr6 26291762 26292294 -156122948 + L1MEd LINE L1 599 1131 -5179 2410 81 0 0 chr6 26292294 26292592 -156122650 + AluY SINE Alu 1 298 -13 430 279 92 94 chr6 26292592 26292618 -156122624 + L1MEd LINE L1 1131 1156 -5154 1392 138 17 77 chr6 26292618 26292915 -156122327 + L1MA9 LINE L1 6034 6312 0 430 279 92 94 chr6 26292915 26293291 -156121951 + L1MEd LINE L1 1156 1587 -4723 2323 102 3 0 chr6 26293383 26293678 -156121564 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr6 26293737 26293759 -156121483 + AT_rich Low_complexity Low_complexity 1 22 0 465 56 125 0 chr6 26293891 26293963 -156121279 - L1MA4 LINE L1 -2 6298 6218 2193 145 87 29 chr6 26294423 26294474 -156120768 - L1MB3 LINE L1 -1 6182 6135 2011 146 0 3 chr6 26294474 26294769 -156120473 - AluJb SINE Alu -18 294 1 2193 145 87 29 chr6 26294769 26295130 -156120112 - L1MB3 LINE L1 -48 6135 5746 1534 201 58 0 chr6 26295565 26295839 -156119403 + AluJb SINE Alu 1 290 -12 499 221 17 22 chr6 26295839 26296020 -156119222 + GA-rich Low_complexity Low_complexity 1 180 0 * 633 89 30 37 chr6 26295991 26296126 -156119116 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 2067 94 42 11 chr6 26296538 26296825 -156118417 - AluSx SINE Alu -16 296 1 764 99 0 0 chr6 26297145 26297246 -156117996 + L1PB4 LINE L1 6048 6148 -8 773 252 13 35 chr6 26297544 26297774 -156117468 - MIR SINE MIR 0 262 38 3241 121 68 17 chr6 26297821 26298386 -156116856 + MER6A DNA MER2_type -4 605 0 432 0 0 0 chr6 26299656 26299704 -156115538 + (CA)n Simple_repeat Simple_repeat 2 49 0 318 274 71 18 chr6 26300813 26300926 -156114316 + MIR SINE MIR 89 207 -55 2295 67 0 3 chr6 26300936 26301274 -156113968 + AluY SINE Alu 1 337 0 293 274 105 48 chr6 26301358 26301482 -156113760 + LTR65 LTR ERV1 30 160 -509 298 324 0 0 chr6 26301987 26302058 -156113184 - L2 LINE L2 -7 3265 3195 1172 176 13 35 chr6 26302248 26302475 -156112767 + AluJo SINE Alu 1 222 -90 2324 87 7 0 chr6 26302658 26302946 -156112296 - AluSx SINE Alu -22 290 1 2450 84 0 0 chr6 26303158 26303456 -156111786 - AluY SINE Alu -13 298 1 21 36 0 0 chr6 26303459 26303487 -156111755 + AT_rich Low_complexity Low_complexity 1 28 0 3348 148 17 32 chr6 26305367 26305410 -156109832 - L1MB3 LINE L1 -9 6174 6132 2048 127 17 3 chr6 26305410 26305702 -156109540 - AluSx SINE Alu -16 296 1 3348 148 17 32 chr6 26305702 26306253 -156108989 - L1MB3 LINE L1 -51 6132 5589 217 344 101 73 chr6 26307178 26307425 -156107817 + L2 LINE L2 3019 3272 0 225 333 133 0 chr6 26307657 26307762 -156107480 + L2 LINE L2 2935 3053 -219 23 33 0 0 chr6 26308054 26308084 -156107158 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr6 26308553 26308574 -156106668 + AT_rich Low_complexity Low_complexity 1 21 0 2141 128 10 6 chr6 26308574 26308886 -156106356 + AluSp SINE Alu 1 313 0 1845 244 105 112 chr6 26309023 26310730 -156104512 + HAL1 LINE L1 67 1762 -745 814 214 30 135 chr6 26310887 26311154 -156104088 - MER8 DNA MER2_type 0 239 1 251 206 185 22 chr6 26312010 26312102 -156103140 - MIR SINE MIR -88 174 68 344 267 62 14 chr6 26312122 26312268 -156102974 - HAL1 LINE L1 0 2507 2355 2695 149 25 51 chr6 26312662 26313171 -156102071 + LTR26B LTR ERV1 1 496 -35 948 79 0 64 chr6 26313170 26313310 -156101932 + MER4B LTR ERV1 477 607 -3 * 1093 271 73 12 chr6 26313498 26313827 -156101415 + MLT1H1 LTR MaLR 1 349 -206 288 163 397 21 chr6 26313934 26314075 -156101167 - L1MC4 LINE L1 -58 7984 7791 1955 163 6 9 chr6 26314083 26314402 -156100840 - MER7A DNA MER2_type -28 318 3 3420 208 97 16 chr6 26314490 26315337 -156099905 - L1MC4 LINE L1 -300 7742 6828 467 214 22 0 chr6 26315382 26315471 -156099771 - L1MC4a LINE L1 -1049 6759 6669 4556 166 39 44 chr6 26315633 26316607 -156098635 + LTR5 LTR ERVK 1 969 0 680 171 62 207 chr6 26316953 26317257 -156097985 - MIR SINE MIR 0 262 3 2322 132 109 5 chr6 26317292 26317678 -156097564 + MSTB LTR MaLR 1 426 0 582 194 206 15 chr6 26317934 26318080 -156097162 - MER5A DNA MER1_type 0 178 10 410 228 111 94 chr6 26318101 26318272 -156096970 + MER5B DNA MER1_type 5 178 0 252 183 33 33 chr6 26318818 26318878 -156096364 - LTR67 LTR ERVL -20 537 478 653 353 57 64 chr6 26319385 26319790 -156095452 - L2 LINE L2 -1 3271 2870 2128 111 3 13 chr6 26321716 26322023 -156093219 - AluSp SINE Alu -9 304 1 2110 118 3 10 chr6 26322032 26322336 -156092906 - AluSx SINE Alu -10 302 1 1992 164 82 68 chr6 26322336 26322857 -156092385 - MER51A LTR ERV1 -90 455 2 1956 129 3 25 chr6 26322904 26323257 -156091985 - MER4A LTR ERV1 0 664 261 517 141 33 11 chr6 26323257 26323349 -156091893 - MER4A LTR ERV1 -566 98 5 16621 96 55 35 chr6 26323361 26324769 -156090473 - MER4A-int LTR ERV1 0 6598 5221 5826 48 0 3 chr6 26324769 26325440 -156089802 + L1PA6 LINE L1 5484 6152 -2 16621 96 55 35 chr6 26325440 26326176 -156089066 - MER4A-int LTR ERV1 -1377 5221 4384 2313 90 0 7 chr6 26326176 26326477 -156088765 + AluSc SINE Alu 3 301 -8 16621 96 55 35 chr6 26326477 26327037 -156088205 - MER4A-int LTR ERV1 -2214 4384 3837 1485 126 170 115 chr6 26327036 26327184 -156088058 - MER4A-int LTR ERV1 -2917 3681 3542 * 1893 156 0 0 chr6 26327184 26327466 -156087776 - AluSx SINE Alu -20 292 11 1485 126 170 115 chr6 26327466 26327868 -156087374 - MER4A-int LTR ERV1 -3056 3542 3001 1930 148 20 0 chr6 26327868 26328171 -156087071 - AluSx SINE Alu -3 309 1 1485 126 170 115 chr6 26328171 26328212 -156087030 - MER4A-int LTR ERV1 -3597 3001 2964 2002 144 0 22 chr6 26328218 26328531 -156086711 - AluSx SINE Alu -6 306 1 10130 41 9 2 chr6 26328547 26330495 -156084747 - L1PA5 LINE L1 0 6154 4196 46603 47 23 2 chr6 26330503 26336108 -156079134 - HERV17 LTR ERV1 -2903 5723 1 6430 53 12 47 chr6 26336108 26336916 -156078326 - LTR17 LTR ERV1 0 780 1 799 41 20 0 chr6 26336916 26337014 -156078228 - HERV17 LTR ERV1 -6498 100 1 1484 142 56 34 chr6 26337016 26337075 -156078167 - MER4A LTR ERV1 0 664 608 2046 111 7 10 chr6 26337075 26337364 -156077878 + AluSx SINE Alu 5 292 -20 1484 142 56 34 chr6 26337364 26337642 -156077600 - MER4A LTR ERV1 -56 608 261 605 84 42 11 chr6 26337642 26337737 -156077505 - MER4A LTR ERV1 -566 98 1 864 223 88 28 chr6 26338429 26338561 -156076681 - MER33 DNA MER1_type -2280 305 182 1712 168 7 0 chr6 26338561 26338835 -156076407 + AluJo SINE Alu 16 291 -21 864 223 88 28 chr6 26338835 26338985 -156076257 - MER33 DNA MER1_type -2403 182 6 2732 48 0 0 chr6 26339150 26339461 -156075781 - AluY SINE Alu 0 311 1 848 204 112 41 chr6 26339502 26339698 -156075544 + MER20 DNA MER1_type 6 215 -4 710 184 0 57 chr6 26339726 26339867 -156075375 + FLAM_C SINE Alu 1 133 0 1189 108 146 5 chr6 26340141 26340353 -156074889 - MSTB LTR MaLR 0 426 185 398 157 21 36 chr6 26340359 26340499 -156074743 + CT-rich Low_complexity Low_complexity 3 140 0 1218 173 18 9 chr6 26340507 26340732 -156074510 - AluJo SINE Alu 0 312 86 777 179 179 18 chr6 26340732 26340900 -156074342 - MSTB LTR MaLR -230 196 2 1207 152 14 5 chr6 26340900 26341110 -156074132 - L1MB3 LINE L1 -56 6127 5916 230 231 0 0 chr6 26341128 26341180 -156074062 - MER103 DNA DNA -75 91 40 2247 117 0 7 chr6 26341521 26341828 -156073414 - AluSx SINE Alu -7 305 1 291 285 24 86 chr6 26342011 26342072 -156073170 + L1ME LINE L1 5672 5735 -386 2034 148 0 3 chr6 26342072 26342375 -156072867 + AluJo SINE Alu 1 302 -10 291 285 24 86 chr6 26342375 26342520 -156072722 + L1ME LINE L1 5735 5872 -249 186 170 149 0 chr6 26342549 26342596 -156072646 - L2 LINE L2 -1 3271 3218 311 238 79 63 chr6 26342686 26342875 -156072367 + L1ME LINE L1 5281 5472 -2336 700 143 0 0 chr6 26342891 26342989 -156072253 + AluSp/q SINE Alu 200 297 -16 251 184 0 0 chr6 26343109 26343158 -156072084 + L1ME LINE L1 5771 5819 -343 507 122 0 24 chr6 26343212 26343294 -156071948 + FLAM_C SINE Alu 58 137 -6 26 30 0 0 chr6 26343539 26343572 -156071670 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr6 26343688 26343722 -156071520 + AT_rich Low_complexity Low_complexity 1 34 0 287 49 73 0 chr6 26345044 26345085 -156070157 - L2 LINE L2 0 3313 3270 656 192 60 177 chr6 26345148 26345533 -156069709 - L2 LINE L2 -49 3264 2925 235 139 0 0 chr6 26345575 26345611 -156069631 - L2 LINE L2 -570 2744 2709 310 241 0 0 chr6 26345614 26345672 -156069570 - Tigger5 DNA MER2_type 0 2323 2266 363 284 0 35 chr6 26345767 26345883 -156069359 - L2 LINE L2 -605 2709 2598 375 280 105 20 chr6 26345954 26346154 -156069088 - L2 LINE L2 -1220 2094 1878 1508 169 0 8 chr6 26346245 26346499 -156068743 - AluJo SINE Alu -25 287 36 259 259 191 8 chr6 26346508 26346639 -156068603 - MIR SINE MIR -18 244 90 2022 117 0 0 chr6 26347542 26347816 -156067426 - AluSx SINE Alu -15 297 24 263 316 118 7 chr6 26348206 26348342 -156066900 + MIR SINE MIR 88 238 -24 2322 102 0 0 chr6 26348847 26349142 -156066100 + AluSx SINE Alu 6 300 -12 350 228 130 0 chr6 26349203 26349295 -156065947 + L2 LINE L2 2954 3057 -215 1969 120 33 0 chr6 26349600 26349907 -156065335 + AluSx SINE Alu 1 316 0 307 234 16 0 chr6 26350256 26350320 -156064922 + MIR SINE MIR 194 258 -4 237 274 33 98 chr6 26350316 26350469 -156064773 - L3 LINE CR1 -42 1535 1393 * 2352 95 0 0 chr6 26350595 26350889 -156064353 - AluSg SINE Alu -16 294 1 694 117 216 0 chr6 26352221 26352332 -156062910 + AluJo SINE Alu 2 136 -176 1822 121 15 0 chr6 26352458 26352723 -156062519 - AluSx SINE Alu -14 298 30 2529 53 0 3 chr6 26353024 26353325 -156061917 - AluY SINE Alu -11 300 1 2278 107 0 0 chr6 26354241 26354551 -156060691 - AluSx SINE Alu -2 310 1 1422 156 73 43 chr6 26355790 26355939 -156059303 - MLT1A1 LTR MaLR -55 310 167 2114 118 3 3 chr6 26355939 26356226 -156059016 - AluSx SINE Alu -25 287 1 1422 156 73 43 chr6 26356226 26356377 -156058865 - MLT1A1 LTR MaLR -198 167 1 1315 180 84 0 chr6 26356730 26356991 -156058251 - AluJo SINE Alu -29 283 1 552 189 141 68 chr6 26357129 26357335 -156057907 + L1MC4a LINE L1 6627 6847 -961 293 239 141 7 chr6 26357355 26357497 -156057745 + L1MC4 LINE L1 7044 7204 -838 912 224 188 31 chr6 26357677 26358155 -156057087 + L1MC4 LINE L1 7490 8042 0 396 231 94 16 chr6 26358224 26358407 -156056835 + MIR SINE MIR 8 256 -6 189 107 0 0 chr6 26358726 26358754 -156056488 + (T)n Simple_repeat Simple_repeat 1 28 0 278 25 0 25 chr6 26359130 26359170 -156056072 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr6 26360093 26360116 -156055126 + AT_rich Low_complexity Low_complexity 1 23 0 1773 153 20 14 chr6 26360445 26360740 -156054502 + AluJb SINE Alu 1 297 -15 253 223 108 108 chr6 26360967 26361106 -156054136 - MIR SINE MIR -55 207 69 1581 173 39 11 chr6 26361178 26361462 -156053780 - AluJo SINE Alu -16 296 5 2237 70 17 30 chr6 26361537 26361836 -156053406 + AluY SINE Alu 1 295 -16 302 263 305 8 chr6 26361845 26361963 -156053279 - MER5A DNA MER1_type 0 189 37 202 286 0 0 chr6 26362082 26362131 -156053111 - MER5B DNA MER1_type -129 49 1 1880 145 39 0 chr6 26362171 26362453 -156052789 - AluJo SINE Alu -19 293 1 640 195 26 39 chr6 26362893 26363047 -156052195 - MER3 DNA MER1_type -55 154 3 420 276 164 0 chr6 26363254 26363388 -156051854 + MIR SINE MIR 53 208 -54 2347 91 7 0 chr6 26364082 26364379 -156050863 - AluSp SINE Alu -14 299 1 1708 173 23 23 chr6 26364532 26364833 -156050409 + AluJo SINE Alu 1 301 -11 246 32 0 0 chr6 26365055 26365086 -156050156 + (CA)n Simple_repeat Simple_repeat 2 32 0 968 119 0 0 chr6 26365328 26365454 -156049788 + FLAM_C SINE Alu 1 126 -17 1752 164 18 7 chr6 26365918 26366204 -156049038 + AluSx SINE Alu 1 289 -23 2212 87 0 71 chr6 26366204 26366526 -156048716 + AluSc SINE Alu 1 299 -10 363 208 42 0 chr6 26366869 26366941 -156048301 - Tigger5 DNA MER2_type 0 2323 2249 352 254 0 0 chr6 26366946 26367017 -156048225 + Tigger5 DNA MER2_type 2249 2319 -4 410 159 0 14 chr6 26367020 26367089 -156048153 - Tigger5 DNA MER2_type -2247 76 9 1969 138 3 10 chr6 26368436 26368733 -156046509 - AluSx SINE Alu -17 295 1 2142 124 0 7 chr6 26369380 26369686 -156045556 + AluSx SINE Alu 1 304 -8 2194 107 3 3 chr6 26370538 26370838 -156044404 - AluSx SINE Alu -12 300 1 712 212 7 22 chr6 26371328 26371465 -156043777 + AluJo SINE Alu 2 136 -176 180 0 0 0 chr6 26372971 26372991 -156042251 + (A)n Simple_repeat Simple_repeat 1 20 0 210 128 0 0 chr6 26374081 26374120 -156041122 + (CGG)n Simple_repeat Simple_repeat 3 41 0 2359 88 0 0 chr6 26376124 26376429 -156038813 + AluSx SINE Alu 1 305 -7 512 145 0 0 chr6 26376456 26376525 -156038717 - AluS SINE Alu -243 70 2 4354 150 95 20 chr6 26376593 26377356 -156037886 - L1MB8 LINE L1 -5 6173 5309 2039 120 7 0 chr6 26377356 26377670 -156037572 - AluSx SINE Alu 0 316 1 4354 150 95 20 chr6 26377670 26377917 -156037325 - L1MB8 LINE L1 -869 5309 5082 2261 109 3 0 chr6 26379419 26379731 -156035511 + AluSq SINE Alu 1 313 0 218 324 0 0 chr6 26379834 26379905 -156035337 + CT-rich Low_complexity Low_complexity 2 72 0 1892 215 204 5 chr6 26380693 26381139 -156034103 - MLT1F LTR MaLR -7 535 1 837 208 120 0 chr6 26381233 26381425 -156033817 - MER58A DNA MER1_type -1 223 9 283 213 80 13 chr6 26381426 26381501 -156033741 - MLT1I LTR MaLR -14 395 316 760 230 35 40 chr6 26381558 26381758 -156033484 - MLT1I LTR MaLR -189 220 22 221 275 154 44 chr6 26382180 26382271 -156032971 - L2 LINE L2 -13 3300 3200 273 284 47 40 chr6 26382653 26382801 -156032441 + HAL1 LINE L1 5 153 -2354 2384 106 0 0 chr6 26382938 26383249 -156031993 + AluSx SINE Alu 2 312 0 286 314 52 35 chr6 26383395 26383624 -156031618 + HAL1 LINE L1 848 1080 -1427 356 270 112 10 chr6 26383661 26383857 -156031385 + HAL1 LINE L1 1146 1361 -1146 251 236 24 65 chr6 26383876 26383999 -156031243 + HAL1b LINE L1 339 456 -892 * 1353 249 43 14 chr6 26383988 26384433 -156030809 + L1ME4a LINE L1 4888 5345 -801 2598 106 11 24 chr6 26384438 26384807 -156030435 + THE1B LTR MaLR 1 364 0 11854 98 2 2 chr6 26384807 26386379 -156028863 + THE1B-int LTR MaLR 1 1571 -9 430 265 63 5 chr6 26386643 26386832 -156028410 + L1ME4a LINE L1 5717 5916 -205 1202 312 75 37 chr6 26386883 26387195 -156028047 + L1MEd LINE L1 60 359 -5760 2285 111 3 0 chr6 26387195 26387501 -156027741 + AluSx SINE Alu 5 311 -1 1202 312 75 37 chr6 26387501 26387813 -156027429 + L1MEd LINE L1 359 708 -5411 1646 170 32 14 chr6 26387825 26388107 -156027135 + AluJo SINE Alu 13 299 -13 1379 199 115 3 chr6 26388107 26388419 -156026823 + L1ME3 LINE L1 5555 5901 -263 1909 131 4 0 chr6 26388425 26388693 -156026549 + AluSx SINE Alu 39 307 -5 526 111 0 30 chr6 26388696 26388795 -156026447 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 445 218 211 0 chr6 26388830 26388972 -156026270 + L1ME3 LINE L1 5990 6161 -1 301 286 59 77 chr6 26389004 26389224 -156026018 + L1MC4 LINE L1 7826 8041 -1 387 300 9 0 chr6 26389238 26389348 -156025894 + HAL1 LINE L1 1531 1641 -866 1118 299 78 31 chr6 26389382 26389830 -156025412 + MLT1K LTR MaLR 58 526 -62 1136 216 93 31 chr6 26389893 26390217 -156025025 + MLT1C LTR MaLR 1 344 -123 377 165 0 13 chr6 26390220 26390299 -156024943 + A-rich Low_complexity Low_complexity 2 79 0 623 153 0 10 chr6 26390337 26390435 -156024807 + MLT1C LTR MaLR 371 467 0 1894 140 7 0 chr6 26390474 26390752 -156024490 + AluJo SINE Alu 21 300 -12 2079 148 0 3 chr6 26390870 26391181 -156024061 + AluSx SINE Alu 1 310 -2 261 247 14 0 chr6 26391239 26391312 -156023930 + HAL1 LINE L1 2087 2160 -347 313 312 0 51 chr6 26391372 26391510 -156023732 + HAL1b LINE L1 761 891 -457 968 183 42 124 chr6 26391737 26391762 -156023480 + L1ME3A LINE L1 5667 5692 -478 2478 82 3 0 chr6 26391762 26392067 -156023175 + AluSp SINE Alu 1 306 -7 968 183 42 124 chr6 26392067 26392397 -156022845 + L1ME3A LINE L1 5692 5993 -177 1594 257 58 54 chr6 26392410 26392932 -156022310 - MLT1G1 LTR MaLR 0 595 72 507 235 37 43 chr6 26392976 26393138 -156022104 + L1ME3A LINE L1 6010 6170 0 687 273 150 5 chr6 26393197 26393417 -156021825 + MIR SINE MIR 11 262 0 2671 127 3 3 chr6 26393478 26393840 -156021402 + THE1B LTR MaLR 3 364 0 1018 161 4 100 chr6 26394325 26394555 -156020687 + MLT1B LTR MaLR 1 208 -182 562 235 76 38 chr6 26394556 26394688 -156020554 + FLAM_A SINE Alu 1 137 -5 1163 172 0 0 chr6 26394689 26394875 -156020367 + MLT1B LTR MaLR 205 390 0 1646 180 0 46 chr6 26394967 26395272 -156019970 + AluJo SINE Alu 1 291 -21 2020 149 0 13 chr6 26395283 26395598 -156019644 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr6 26395601 26395629 -156019613 + AT_rich Low_complexity Low_complexity 1 28 0 2255 103 3 0 chr6 26395647 26395948 -156019294 + AluSx SINE Alu 11 312 0 212 363 8 0 chr6 26396190 26396314 -156018928 - L2 LINE L2 -1345 1969 1845 592 266 139 41 chr6 26397265 26397603 -156017639 - MLT1L LTR MaLR -125 490 120 980 135 0 0 chr6 26398004 26398145 -156017097 - FLAM_C SINE Alu -2 141 1 325 24 0 24 chr6 26398178 26398220 -156017022 + MADE1 DNA Mariner 1 41 -39 702 165 61 0 chr6 26398548 26398663 -156016579 + FLAM_A SINE Alu 2 123 -10 833 232 18 58 chr6 26399287 26399432 -156015810 - MER58A DNA MER1_type -2199 221 87 2082 101 0 11 chr6 26399432 26399709 -156015533 - AluSx SINE Alu -38 274 1 833 232 18 58 chr6 26399709 26399787 -156015455 - MER58A DNA MER1_type -2333 87 7 180 0 0 0 chr6 26399861 26399881 -156015361 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 224 30 30 0 chr6 26399928 26399961 -156015281 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1472 140 10 104 chr6 26399963 26400271 -156014971 - AluJo SINE Alu -33 279 1 944 193 20 5 chr6 26400756 26400958 -156014284 - L1MD3 LINE L1 0 7995 7791 1605 165 0 81 chr6 26401087 26401421 -156013821 + AluJo SINE Alu 1 307 -5 318 148 0 0 chr6 26401424 26401478 -156013764 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2249 109 3 0 chr6 26401584 26401878 -156013364 + AluSx SINE Alu 1 295 -17 2493 79 0 0 chr6 26402278 26402581 -156012661 + AluSc SINE Alu 1 303 -6 220 350 158 8 chr6 26402901 26403267 -156011975 - L2 LINE L2 -1198 2116 1696 384 239 90 32 chr6 26403377 26403532 -156011710 + L1MC4 LINE L1 7877 8040 -2 2004 132 35 0 chr6 26403767 26404054 -156011188 + AluSx SINE Alu 1 297 -15 2134 127 58 64 chr6 26404681 26405058 -156010184 + THE1C LTR MaLR 1 375 0 566 256 21 59 chr6 26405630 26405868 -156009374 - L1MC5 LINE L1 -73 7888 7660 2429 83 0 0 chr6 26405885 26406186 -156009056 - AluY SINE Alu -10 301 1 660 252 194 92 chr6 26406512 26406709 -156008533 - LTR33 LTR ERVL -27 494 319 1717 149 10 21 chr6 26406709 26406997 -156008245 + AluJo SINE Alu 11 295 -17 660 252 194 92 chr6 26406997 26407247 -156007995 - LTR33 LTR ERVL -202 319 1 708 257 81 5 chr6 26407378 26407588 -156007654 - MIR SINE MIR -14 248 23 555 234 26 75 chr6 26407588 26407728 -156007514 + L1MC4a LINE L1 5687 5813 -1995 840 146 0 36 chr6 26407728 26407865 -156007377 + FLAM_A SINE Alu 1 132 -1 555 234 26 75 chr6 26407865 26407950 -156007292 + L1MC4a LINE L1 5813 5901 -1907 535 219 109 57 chr6 26408160 26408264 -156006978 - MIR SINE MIR 0 262 165 2439 113 73 14 chr6 26408264 26408608 -156006634 - THE1B LTR MaLR 0 364 1 535 219 109 57 chr6 26408608 26408695 -156006547 - MIR SINE MIR -97 165 61 978 322 79 49 chr6 26408960 26409606 -156005636 - L3 LINE CR1 -729 848 174 2119 122 0 3 chr6 26409606 26409894 -156005348 + AluSc SINE Alu 1 287 -22 978 322 79 49 chr6 26409894 26410007 -156005235 - L3 LINE CR1 -1403 174 66 4283 123 18 5 chr6 26410007 26410631 -156004611 - MER41B LTR ERV1 0 635 4 2327 100 0 13 chr6 26410716 26411027 -156004215 - AluSx SINE Alu -5 307 1 1658 97 0 21 chr6 26411747 26411984 -156003258 - MER4E LTR ERV1 0 766 535 1494 104 135 12 chr6 26411975 26412234 -156003008 - MER4B LTR ERV1 -319 291 1 * 631 195 148 20 chr6 26412238 26412387 -156002855 + MER45A DNA AcHobo 10 177 -1 1809 158 47 0 chr6 26412999 26413297 -156001945 + AluSx SINE Alu 1 312 0 620 228 152 16 chr6 26413342 26413526 -156001716 + MER58C DNA MER1_type 7 215 0 1259 147 72 92 chr6 26413617 26413726 -156001516 + LTR54 LTR ERV1 1 111 -399 1814 164 7 0 chr6 26413726 26414024 -156001218 + AluJb SINE Alu 1 300 -12 1259 147 72 92 chr6 26414024 26414206 -156001036 + LTR54 LTR ERV1 111 286 -224 333 0 0 0 chr6 26414208 26414245 -156000997 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1928 117 4 11 chr6 26414248 26414521 -156000721 - AluSx SINE Alu -37 275 5 420 202 53 0 chr6 26414571 26414665 -156000577 + MER57A LTR ERV1 301 399 -4 1891 131 23 107 chr6 26415039 26415562 -155999680 - MER52C LTR ERV1 -699 579 1 260 186 34 34 chr6 26415562 26415620 -155999622 + MER97c DNA MER1_type? 172 229 -861 2444 110 27 54 chr6 26415633 26416043 -155999199 + MSTB1 LTR MaLR 1 399 -33 2153 113 3 0 chr6 26416043 26416335 -155998907 - AluSx SINE Alu -19 293 1 1259 171 91 48 chr6 26416335 26416614 -155998628 + MER97b DNA MER1_type? 468 766 -287 2248 84 47 0 chr6 26416614 26416913 -155998329 + AluSp SINE Alu 1 313 0 1259 171 91 48 chr6 26416913 26416984 -155998258 + MER97b DNA MER1_type? 766 833 -220 971 145 23 41 chr6 26417015 26417187 -155998055 - FRAM SINE Alu -8 168 1 452 225 48 48 chr6 26417206 26417393 -155997849 + MER97c DNA MER1_type? 904 1090 0 321 333 167 21 chr6 26417409 26417780 -155997462 + L2 LINE L2 1548 1864 -1450 2240 114 0 0 chr6 26417780 26418078 -155997164 - AluSx SINE Alu -14 298 1 321 333 167 21 chr6 26418078 26418276 -155996966 + L2 LINE L2 1864 2200 -1114 205 383 32 11 chr6 26418262 26418356 -155996886 - MIR SINE MIR -59 149 54 * 211 257 76 132 chr6 26418461 26418605 -155996637 + L2 LINE L2 2957 3092 -180 381 250 42 42 chr6 26418793 26418913 -155996329 + L2 LINE L2 3153 3272 0 4082 157 103 26 chr6 26418927 26419690 -155995552 - LTR12 LTR ERV1 0 826 5 2788 169 15 26 chr6 26419705 26420316 -155994926 - pTR5 LTR ERV1 -1093 1345 742 198 256 26 64 chr6 26420385 26420463 -155994779 + L3 LINE CR1 1493 1567 -10 1668 140 129 0 chr6 26420995 26421259 -155993983 - AluJo SINE Alu -4 298 1 1924 127 0 14 chr6 26421518 26421801 -155993441 - AluSx SINE Alu -4 308 30 1756 139 43 0 chr6 26421911 26422210 -155993032 + AluSx SINE Alu 1 312 0 271 115 0 4 chr6 26422249 26422295 -155992947 + Alu SINE Alu 1 38 -264 1993 125 4 4 chr6 26422421 26422702 -155992540 - AluSx SINE Alu -31 281 1 2173 120 0 3 chr6 26422707 26423007 -155992235 - AluSc SINE Alu -10 299 1 1026 112 0 0 chr6 26423007 26423141 -155992101 - AluSq/x SINE Alu -177 135 2 2319 92 0 10 chr6 26423142 26423445 -155991797 - AluSq SINE Alu -13 300 1 23 0 0 0 chr6 26423445 26423468 -155991774 + AT_rich Low_complexity Low_complexity 1 23 0 1650 182 0 27 chr6 26423517 26423694 -155991548 - AluJo SINE Alu -21 291 124 240 35 0 0 chr6 26423694 26423723 -155991519 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1650 182 0 27 chr6 26423723 26423842 -155991400 - AluJo SINE Alu -188 124 3 2441 91 0 0 chr6 26423873 26424181 -155991061 + AluY SINE Alu 1 308 -3 342 0 0 0 chr6 26424214 26424252 -155990990 + (TG)n Simple_repeat Simple_repeat 1 38 0 331 50 0 0 chr6 26424252 26424292 -155990950 - AluY SINE Alu -21 279 240 901 78 20 85 chr6 26424292 26424445 -155990797 - AluY SINE Alu -139 172 30 927 259 130 63 chr6 26424445 26424710 -155990532 - L1MC4a LINE L1 -1918 5890 5591 2556 69 0 16 chr6 26424710 26425028 -155990214 + AluSq SINE Alu 1 313 0 927 259 130 63 chr6 26425028 26425140 -155990102 - L1MC4a LINE L1 -2217 5591 5488 1132 245 86 16 chr6 26425142 26425641 -155989601 - MLT1E LTR MaLR -2 591 5 819 244 22 9 chr6 26425646 26425875 -155989367 - L1MC4a LINE L1 -2317 5491 5260 239 193 83 147 chr6 26425939 26426048 -155989194 - Charlie8 DNA MER1_type -2300 117 16 2441 65 3 10 chr6 26426118 26426425 -155988817 - AluY SINE Alu -6 305 1 180 0 0 0 chr6 26426589 26426609 -155988633 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 2013 129 0 4 chr6 26426638 26426947 -155988295 - AluSx SINE Alu 0 313 6 360 249 106 104 chr6 26427023 26427051 -155988191 - L1MC5 LINE L1 -8 7953 7927 2177 105 0 10 chr6 26427051 26427345 -155987897 + AluSg SINE Alu 1 291 -19 360 249 106 104 chr6 26427345 26427465 -155987777 - L1MC5 LINE L1 -34 7927 7809 1098 196 33 9 chr6 26427465 26427679 -155987563 + MER20 DNA MER1_type 1 219 0 360 249 106 104 chr6 26427679 26428020 -155987222 - L1MC5 LINE L1 -152 7809 7462 1241 52 0 13 chr6 26428056 26428210 -155987032 + AluSg/x SINE Alu 156 307 -5 249 264 0 42 chr6 26428263 26428335 -155986907 + L2 LINE L2 3240 3308 -5 291 221 147 21 chr6 26429720 26429815 -155985427 + MER112 DNA MER1_type 148 254 -6 2037 90 0 0 chr6 26429918 26430174 -155985068 - AluSx SINE Alu -17 295 40 547 76 0 0 chr6 26430191 26430257 -155984985 - AluS SINE Alu -246 67 2 1151 186 102 3 chr6 26431277 26431562 -155983680 - L1MC4a LINE L1 -1601 4545 4233 22 23 0 45 chr6 26432018 26432034 -155983208 + AT_rich Low_complexity Low_complexity 1 16 -26 1446 168 24 28 chr6 26432034 26432325 -155982917 + AluJo SINE Alu 1 290 -22 22 23 0 45 chr6 26432325 26432352 -155982890 + AT_rich Low_complexity Low_complexity 16 42 0 31 68 0 0 chr6 26432553 26432612 -155982630 + AT_rich Low_complexity Low_complexity 1 59 0 409 214 34 43 chr6 26432616 26432733 -155982509 - L1MC5 LINE L1 -109 7852 7737 337 278 61 35 chr6 26432801 26432916 -155982326 + MIR3 SINE MIR 42 159 -49 2113 113 17 10 chr6 26434735 26435037 -155980205 + AluSx SINE Alu 2 305 -7 26 0 0 0 chr6 26435037 26435063 -155980179 + AT_rich Low_complexity Low_complexity 1 26 0 1606 191 24 14 chr6 26435621 26435915 -155979327 + AluJo SINE Alu 1 297 -15 303 185 0 0 chr6 26436252 26436306 -155978936 - MIR SINE MIR -70 138 85 2582 233 61 40 chr6 26436763 26437631 -155977611 + L1MC4 LINE L1 6699 7584 -458 21 71 0 0 chr6 26437751 26437793 -155977449 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr6 26437869 26437901 -155977341 + AT_rich Low_complexity Low_complexity 1 32 0 552 286 65 48 chr6 26438456 26438687 -155976555 + MIR SINE MIR 28 262 0 203 326 21 63 chr6 26440051 26440146 -155975096 + MER5A DNA MER1_type 74 164 -25 2257 97 10 0 chr6 26440503 26440801 -155974441 - AluSq SINE Alu -12 301 1 1591 155 34 0 chr6 26440854 26441118 -155974124 - AluJb SINE Alu -39 273 1 216 176 118 0 chr6 26441125 26441176 -155974066 + MIR SINE MIR 132 188 -74 456 213 94 0 chr6 26441231 26441358 -155973884 + MER3 DNA MER1_type 1 139 -70 598 203 174 0 chr6 26441631 26441872 -155973370 + L1ME1 LINE L1 4997 5279 -867 1884 219 97 12 chr6 26441885 26442455 -155972787 + L1ME1 LINE L1 5364 5981 -185 1850 158 3 10 chr6 26442596 26442894 -155972348 + AluSx SINE Alu 1 296 -16 2146 130 13 0 chr6 26443129 26443436 -155971806 + AluSx SINE Alu 1 311 -1 571 256 143 12 chr6 26443481 26443817 -155971425 + L1MC/D LINE L1 3712 4091 -2055 842 229 103 41 chr6 26444141 26444412 -155970830 + LTR16C LTR ERVL 196 483 -8 228 276 26 0 chr6 26444687 26444763 -155970479 + HAL1 LINE L1 2 79 -2428 573 240 45 0 chr6 26444871 26445025 -155970217 + L1MC/D LINE L1 5616 5776 -2032 296 235 15 0 chr6 26445025 26445093 -155970149 - Tigger2a DNA MER2_type 0 444 376 1332 73 11 6 chr6 26445095 26445274 -155969968 - AluSg/x SINE Alu 0 312 133 2211 125 3 3 chr6 26445317 26445629 -155969613 - AluSx SINE Alu 0 312 1 1665 137 59 7 chr6 26445658 26445929 -155969313 - AluJo SINE Alu -27 285 1 366 235 50 0 chr6 26445960 26446044 -155969198 - AluJ SINE Alu -93 209 137 1912 133 29 55 chr6 26446047 26446173 -155969069 - Tigger2a DNA MER2_type -2336 372 244 2256 78 31 3 chr6 26446173 26446466 -155968776 - AluSc SINE Alu -8 301 1 1912 133 29 55 chr6 26446466 26446721 -155968521 - Tigger2a DNA MER2_type -2464 244 1 924 269 141 11 chr6 26447192 26447584 -155967658 + HAL1 LINE L1 1597 2061 -446 2260 102 0 10 chr6 26447584 26447888 -155967354 + AluSg SINE Alu 1 301 -9 924 269 141 11 chr6 26447888 26447964 -155967278 + HAL1 LINE L1 2061 2126 -381 779 144 8 30 chr6 26447987 26448119 -155967123 - AluJ SINE Alu -183 129 1 717 223 69 64 chr6 26448122 26448468 -155966774 + HAL1 LINE L1 2155 2502 -5 682 147 0 9 chr6 26448500 26448609 -155966633 + FLAM_C SINE Alu 11 118 -25 536 200 9 19 chr6 26448658 26448763 -155966479 + FRAM SINE Alu 1 98 -78 593 188 0 18 chr6 26448764 26448876 -155966366 + LTR8 LTR ERV1 533 642 -49 456 182 0 0 chr6 26448894 26448982 -155966260 + AluJ/FRAM SINE Alu 225 312 0 22 0 0 0 chr6 26449983 26450005 -155965237 + AT_rich Low_complexity Low_complexity 1 22 0 3122 182 12 67 chr6 26450226 26450957 -155964285 - LTR8 LTR ERV1 0 691 1 1473 151 49 7 chr6 26552237 26552542 -155862700 - MER33 DNA MER1_type -1 323 6 24 32 0 0 chr6 26553051 26553082 -155862160 + AT_rich Low_complexity Low_complexity 1 31 0 2134 123 7 3 chr6 26553406 26553708 -155861534 - AluSx SINE Alu -9 303 1 233 252 56 0 chr6 26555799 26555942 -155859300 + L1ME1 LINE L1 1753 1903 -4523 300 261 45 34 chr6 26555970 26556058 -155859184 + L1ME1 LINE L1 2089 2177 -4430 232 243 29 19 chr6 26556242 26556345 -155858897 + L1ME4a LINE L1 5960 6063 -58 636 279 107 0 chr6 26556499 26556797 -155858445 - L1ME4a LINE L1 -237 5884 5555 2901 220 50 28 chr6 26557133 26558081 -155857161 + L1ME1 LINE L1 5477 6445 -1 332 319 57 0 chr6 26558081 26558222 -155857020 + L1MDa LINE L1 1912 2060 -4480 1362 184 140 4 chr6 26558230 26558480 -155856762 + AluJb SINE Alu 1 284 -18 25 31 0 0 chr6 26558577 26558609 -155856633 + AT_rich Low_complexity Low_complexity 1 32 0 10147 42 1 0 chr6 26558786 26560116 -155855126 + L1P LINE L1 2558 3888 -2258 567 175 97 0 chr6 26561451 26561565 -155853677 - FLAM_C SINE Alu -5 128 4 6588 28 6 0 chr6 26561665 26562483 -155852759 + L1PA3 LINE L1 5313 6135 -20 2082 149 39 0 chr6 26562567 26562949 -155852293 + L1PA16 LINE L1 5769 6165 -1 2116 134 0 0 chr6 26563860 26564159 -155851083 + AluSg SINE Alu 2 300 -10 246 290 140 20 chr6 26564801 26564901 -155850341 + L2 LINE L2 3151 3262 -10 807 104 0 8 chr6 26565928 26566053 -155849189 + L1MB8 LINE L1 6055 6178 0 344 246 79 0 chr6 26566057 26566183 -155849059 - L1ME4a LINE L1 0 6121 5986 1424 261 108 38 chr6 26566705 26567261 -155847981 + MLT1G1 LTR MaLR 1 595 0 204 250 0 0 chr6 26567329 26567369 -155847873 - MIR SINE MIR -113 149 110 1007 167 11 6 chr6 26568780 26568954 -155846288 - AluJo SINE Alu -137 175 1 2374 197 72 35 chr6 26568960 26569075 -155846167 - L1MB7 LINE L1 -77 6107 5998 432 55 0 0 chr6 26569075 26569130 -155846112 + (CA)n Simple_repeat Simple_repeat 2 56 0 2374 197 72 35 chr6 26569130 26569664 -155845578 - L1MB7 LINE L1 -186 5998 5434 1385 185 26 0 chr6 26569860 26570092 -155845150 - AluJb SINE Alu -11 301 64 267 269 156 27 chr6 26570190 26570447 -155844795 + L1M4 LINE L1 4713 5002 -1144 912 246 24 40 chr6 26571796 26572093 -155843149 + LTR40a LTR ERVL 226 517 -2 625 262 18 36 chr6 26572324 26572492 -155842750 + MER5A DNA MER1_type 1 165 -24 2099 101 7 36 chr6 26572961 26573269 -155841973 + AluSx SINE Alu 5 303 -9 184 192 0 0 chr6 26576943 26576969 -155838273 + A-rich Low_complexity Low_complexity 1 26 0 2808 184 32 15 chr6 26577292 26577830 -155837412 + L1MB8 LINE L1 4747 5312 -872 3342 151 13 2 chr6 26577830 26578374 -155836868 + MER44D DNA MER2_type 1 605 0 2808 184 32 15 chr6 26578374 26578821 -155836421 + L1MB8 LINE L1 5312 5750 -434 2202 160 81 35 chr6 26578822 26579315 -155835927 - MER39 LTR ERV1 0 707 192 677 206 48 5 chr6 26579330 26579539 -155835703 + L1MB8 LINE L1 5748 5965 -213 302 222 37 12 chr6 26579651 26579732 -155835510 + L2 LINE L2 2670 2752 -562 284 254 0 111 chr6 26579913 26580039 -155835203 + MLT1H LTR MaLR 233 344 -205 572 152 0 0 chr6 26580072 26580171 -155835071 + MLT1H LTR MaLR 451 549 0 928 260 165 13 chr6 26580174 26580617 -155834625 + L2 LINE L2 2754 3271 -42 26 0 0 0 chr6 26581035 26581061 -155834181 + AT_rich Low_complexity Low_complexity 1 26 0 256 197 56 14 chr6 26581574 26581645 -155833597 + HAL1 LINE L1 1584 1657 -850 194 213 115 16 chr6 26581713 26581774 -155833468 - L3 LINE CR1 -109 1468 1402 230 256 67 78 chr6 26582606 26582696 -155832546 + L2 LINE L2 3209 3297 -16 221 224 82 0 chr6 26582652 26582701 -155832541 + MIR SINE MIR 205 257 -5 * 370 323 60 23 chr6 26583486 26583619 -155831623 - L2 LINE L2 -14 3258 3121 542 276 53 109 chr6 26583649 26583813 -155831429 + L2 LINE L2 1538 1710 -1604 2114 116 0 7 chr6 26583813 26584125 -155831117 + AluSc SINE Alu 1 310 0 542 276 53 109 chr6 26584125 26584339 -155830903 + L2 LINE L2 1710 1881 -1433 1996 119 7 4 chr6 26584339 26584616 -155830626 + AluSx SINE Alu 5 282 -30 542 276 53 109 chr6 26584616 26584767 -155830475 + L2 LINE L2 1881 2039 -1275 706 332 41 56 chr6 26584817 26585481 -155829761 + L2 LINE L2 2573 3226 -46 382 225 17 152 chr6 26586004 26586182 -155829060 - MIR3 SINE MIR -9 199 46 2241 117 7 0 chr6 26586182 26586490 -155828752 + AluSg SINE Alu 1 310 0 227 200 0 0 chr6 26586931 26586981 -155828261 + (TA)n Simple_repeat Simple_repeat 2 51 0 1183 137 52 21 chr6 26587062 26587295 -155827947 + MER21A LTR ERV1 25 264 -667 2894 155 59 21 chr6 26587302 26587830 -155827412 + MER21A LTR ERV1 378 925 -6 365 164 14 0 chr6 26587837 26587910 -155827332 + L1MB4 LINE L1 6107 6180 0 954 189 18 39 chr6 26587980 26588350 -155826892 + L1MDa LINE L1 2380 2740 -3800 347 256 157 65 chr6 26588638 26588735 -155826507 + L1MC/D LINE L1 5492 5579 -572 1514 170 56 36 chr6 26588735 26589094 -155826148 - MER47A DNA MER2_type 0 366 1 347 256 157 65 chr6 26589094 26589320 -155825922 + L1MC/D LINE L1 5579 5847 -304 1166 228 11 11 chr6 26589452 26589728 -155825514 + MER93b LTR ERV1 98 373 0 1244 207 66 88 chr6 26590611 26591079 -155824163 - MLT1C LTR MaLR -3 464 7 2571 58 0 3 chr6 26591578 26591890 -155823352 + AluY SINE Alu 1 311 0 341 361 65 19 chr6 26592382 26592645 -155822597 + L1MEd LINE L1 487 761 -5358 1807 184 3 3 chr6 26593608 26593902 -155821340 + AluJo SINE Alu 1 294 -18 16155 122 23 16 chr6 26594432 26597924 -155817318 - L1P3 LINE L1 -2534 3927 377 773 164 0 38 chr6 26598092 26598275 -155816967 + L1M4 LINE L1 5266 5441 -737 1398 262 61 17 chr6 26598307 26598780 -155816462 + L1MEc LINE L1 37 530 -5866 368 238 12 12 chr6 26599577 26599657 -155815585 - L2 LINE L2 -4 3309 3230 258 299 143 0 chr6 26600079 26600226 -155815016 - MIR SINE MIR -10 252 85 263 264 14 0 chr6 26600318 26600390 -155814852 + GA-rich Low_complexity Low_complexity 1 73 0 382 282 122 6 chr6 26600407 26600563 -155814679 + MIR SINE MIR 65 238 -24 2132 137 0 3 chr6 26600694 26600987 -155814255 - AluSp SINE Alu -16 297 6 396 296 37 0 chr6 26601008 26601116 -155814126 + L2 LINE L2 3199 3310 -3 347 113 0 0 chr6 26601543 26601596 -155813646 + Alu SINE Alu 242 294 -8 1189 221 62 78 chr6 26601713 26602068 -155813174 - L1MC5 LINE L1 -722 7239 6895 4424 145 32 25 chr6 26602068 26602413 -155812829 - L1MA8 LINE L1 -4 6287 5946 1239 180 38 112 chr6 26602413 26602807 -155812435 + MLT1A1 LTR MaLR 1 365 0 4424 145 32 25 chr6 26602807 26603300 -155811942 - L1MA8 LINE L1 -345 5946 5443 1189 221 62 78 chr6 26603300 26603511 -155811731 - L1MC5 LINE L1 -1066 6895 6682 568 135 4 18 chr6 26603524 26603776 -155811466 + AluSx SINE Alu 1 303 -7 206 339 0 0 chr6 26603945 26604007 -155811235 + L2 LINE L2 3205 3266 -6 266 340 33 7 chr6 26604027 26604180 -155811062 + MARNA DNA Mariner 400 556 -30 415 162 14 0 chr6 26604215 26604289 -155810953 + HY5 scRNA scRNA 1 75 -9 237 65 0 0 chr6 26605295 26605326 -155809916 + (A)n Simple_repeat Simple_repeat 1 31 0 23 54 0 0 chr6 26605435 26605472 -155809770 + AT_rich Low_complexity Low_complexity 1 37 0 581 220 84 57 chr6 26605693 26606061 -155809181 - L1MC5 LINE L1 -44 7917 7540 1685 162 45 3 chr6 26606134 26606424 -155808818 - AluSx SINE Alu -6 306 5 843 86 0 0 chr6 26606430 26606546 -155808696 - L1PB1 LINE L1 -4 6147 6032 308 328 15 0 chr6 26606774 26606908 -155808334 + L1MC/D LINE L1 5690 5825 -1983 349 252 222 0 chr6 26607346 26607506 -155807736 - MIR SINE MIR -16 246 42 1302 133 35 35 chr6 26607542 26607768 -155807474 + MER30 DNA MER1_type 5 230 0 2137 216 76 37 chr6 26607874 26608415 -155806827 - MER68 LTR ERV1 0 562 1 2527 156 14 16 chr6 26609654 26610078 -155805164 + MSTB LTR MaLR 1 423 -3 341 266 29 40 chr6 26610536 26610709 -155804533 + L1MC5 LINE L1 7701 7871 -90 757 305 147 14 chr6 26610832 26611321 -155803921 + LTR67 LTR ERVL 4 557 0 1980 223 26 28 chr6 26611721 26612227 -155803015 + MLT1D LTR MaLR 1 505 0 217 326 78 7 chr6 26612431 26612572 -155802670 + MIR SINE MIR 61 211 -51 25 0 0 0 chr6 26612586 26612611 -155802631 + AT_rich Low_complexity Low_complexity 1 25 0 344 298 254 10 chr6 26612741 26612946 -155802296 + MIR SINE MIR 8 262 0 187 305 29 48 chr6 26612992 26613097 -155802145 - MIR SINE MIR -47 215 113 1625 169 23 29 chr6 26613097 26613405 -155801837 + AluSx SINE Alu 1 306 -6 1775 161 0 0 chr6 26613655 26613947 -155801295 + AluJb SINE Alu 17 308 0 2264 90 3 34 chr6 26613948 26614270 -155800972 + AluSx SINE Alu 1 312 0 249 330 0 19 chr6 26614753 26614859 -155800383 + CT-rich Low_complexity Low_complexity 2 105 0 320 199 133 80 chr6 26614995 26615014 -155800228 + L1ME4a LINE L1 5748 5765 -356 1892 150 0 7 chr6 26615014 26615300 -155799942 + AluJo SINE Alu 1 284 -28 320 199 133 80 chr6 26615300 26615431 -155799811 + L1ME4a LINE L1 5765 5906 -215 3446 239 43 28 chr6 26615622 26617426 -155797816 + L1MB2 LINE L1 3722 5672 -492 2037 198 160 9 chr6 26617401 26618052 -155797190 + L1M4c LINE L1 1086 1834 -4550 * 323 212 148 3 chr6 26618052 26618151 -155797091 + FLAM_A SINE Alu 19 107 -26 237 65 0 0 chr6 26618190 26618221 -155797021 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 24 73 0 chr6 26618232 26618273 -155796969 + (TA)n Simple_repeat Simple_repeat 1 44 0 251 43 100 0 chr6 26618374 26618444 -155796798 + (TA)n Simple_repeat Simple_repeat 1 77 0 27589 116 20 17 chr6 26618741 26625149 -155790093 + L1PA8 LINE L1 10 6483 -4 1445 221 43 5 chr6 26625182 26625621 -155789621 + L1M4c LINE L1 1924 2379 -4005 915 197 126 45 chr6 26625624 26625893 -155789349 + L1MB2 LINE L1 6075 6365 -42 1842 139 3 17 chr6 26626729 26627030 -155788212 - AluJb SINE Alu -15 297 1 235 143 0 41 chr6 26627099 26627148 -155788094 + MLT1L LTR MaLR 150 196 -419 2075 92 34 7 chr6 26627492 26627787 -155787455 + AluY SINE Alu 1 303 -8 1723 133 27 23 chr6 26627896 26628196 -155787046 - AluSx SINE Alu -6 306 6 324 363 18 0 chr6 26628696 26628809 -155786433 - L1M4 LINE L1 -1980 4166 4052 2304 104 3 0 chr6 26628899 26629197 -155786045 + AluSq SINE Alu 1 299 -14 950 232 98 4 chr6 26629230 26629484 -155785758 + ERVL LTR ERVL 4158 4435 -1329 626 258 82 65 chr6 26629542 26630108 -155785134 + ERVL LTR ERVL 4533 5178 -586 1103 96 0 0 chr6 26631045 26631191 -155784051 + AluSp/q SINE Alu 160 305 -8 457 0 68 0 chr6 26631454 26631527 -155783715 + (CAAA)n Simple_repeat Simple_repeat 2 79 0 22 56 0 0 chr6 26631842 26631878 -155783364 + AT_rich Low_complexity Low_complexity 1 36 0 52 50 0 0 chr6 26633309 26633389 -155781853 + AT_rich Low_complexity Low_complexity 1 80 0 1736 184 3 3 chr6 26637590 26637873 -155777369 + AluJb SINE Alu 1 283 -29 720 215 72 15 chr6 26638528 26638723 -155776519 - MER3 DNA MER1_type -3 206 1 462 88 0 0 chr6 26638727 26638795 -155776447 + (CA)n Simple_repeat Simple_repeat 2 69 0 325 277 95 20 chr6 26639220 26639368 -155775874 + MIR SINE MIR 92 250 -12 2428 131 75 26 chr6 26639586 26640053 -155775189 + L1MB2 LINE L1 5675 6164 -7 238 188 0 0 chr6 26640217 26640265 -155774977 - MER96B DNA MER1_type? -180 237 190 343 196 0 103 chr6 26640289 26640386 -155774856 - L1MC4 LINE L1 -1339 6703 6617 601 206 73 6 chr6 26640719 26640884 -155774358 - MER96B DNA MER1_type? -241 176 1 1114 268 40 39 chr6 26641013 26641428 -155773814 + MLT1A1 LTR MaLR 1 365 0 356 287 132 8 chr6 26643178 26643307 -155771935 + MER5A DNA MER1_type 37 181 -8 21 0 0 0 chr6 26643927 26643948 -155771294 + AT_rich Low_complexity Low_complexity 1 21 0 1830 135 0 34 chr6 26643951 26644248 -155770994 + AluSx SINE Alu 1 287 -25 656 210 30 42 chr6 26644249 26644416 -155770826 + L1MD3 LINE L1 7828 7992 -3 1081 159 30 86 chr6 26645484 26645716 -155769526 + MER20 DNA MER1_type 1 219 0 197 326 65 11 chr6 26645942 26646034 -155769208 + MIR3 SINE MIR 91 187 -21 855 149 22 15 chr6 26646062 26646196 -155769046 - AluJb SINE Alu -177 135 1 437 104 104 0 chr6 26646234 26646301 -155768941 + LTR32 LTR ERVL 15 88 -383 1169 155 29 75 chr6 26646322 26646561 -155768681 + LTR32 LTR ERVL 234 461 -10 1235 183 58 4 chr6 26647235 26647492 -155767750 + MER33 DNA MER1_type 8 278 -46 2720 184 68 19 chr6 26647599 26648170 -155767072 - L1MC4 LINE L1 -766 7276 6678 1781 126 92 43 chr6 26648170 26648330 -155766912 + MER2 DNA MER2_type 4 155 -190 2390 146 45 42 chr6 26648330 26648755 -155766487 + MSTA LTR MaLR 1 426 -2 1781 126 92 43 chr6 26648755 26648920 -155766322 + MER2 DNA MER2_type 155 345 0 957 181 63 19 chr6 26648920 26649125 -155766117 - L1MC4 LINE L1 -1364 6678 6465 760 257 101 93 chr6 26650219 26650616 -155764626 - L1ME4a LINE L1 -1 6120 5717 1655 162 55 17 chr6 26650616 26650906 -155764336 - AluJb SINE Alu -11 301 1 760 257 101 93 chr6 26650906 26651014 -155764228 - L1ME4a LINE L1 -404 5717 5611 221 333 0 17 chr6 26651515 26651575 -155763667 + L3b LINE CR1 1515 1573 -10 1770 181 13 0 chr6 26651824 26652122 -155763120 - AluSx SINE Alu -5 307 6 234 0 0 0 chr6 26652442 26652468 -155762774 + (TG)n Simple_repeat Simple_repeat 1 26 0 235 344 99 21 chr6 26652671 26652863 -155762379 + MLT1K LTR MaLR 189 395 -193 1918 176 0 6 chr6 26652906 26653218 -155762024 + AluSx SINE Alu 2 311 -1 1971 138 0 0 chr6 26653227 26653502 -155761740 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr6 26653506 26653531 -155761711 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 253 264 0 14 chr6 26653581 26653653 -155761589 + MLT1K LTR MaLR 501 571 -17 1774 204 31 22 chr6 26653816 26654268 -155760974 - L1M4b LINE L1 -3549 2531 2076 1763 177 0 0 chr6 26654273 26654585 -155760657 + AluJb SINE Alu 1 312 0 522 336 41 31 chr6 26654865 26655183 -155760059 + MER68 LTR ERV1 242 562 0 2180 129 0 19 chr6 26655211 26655528 -155759714 - AluSx SINE Alu -1 311 1 920 272 47 66 chr6 26655611 26656084 -155759158 - L1M4b LINE L1 -5176 894 471 2718 26 0 3 chr6 26656084 26656394 -155758848 - AluY SINE Alu -2 309 1 920 272 47 66 chr6 26656394 26656737 -155758505 - L1M4b LINE L1 -5599 471 123 390 256 112 37 chr6 26656790 26657185 -155758057 - L1MCc LINE L1 -4958 1465 1176 342 242 76 38 chr6 26657704 26657861 -155757381 - L1MCc LINE L1 -6236 187 25 1983 123 56 0 chr6 26657899 26658184 -155757058 + AluSx SINE Alu 1 301 -11 1522 185 75 4 chr6 26658204 26658485 -155756757 + AluJb SINE Alu 1 301 -11 249 269 214 55 chr6 26658553 26658698 -155756544 + MIR SINE MIR 75 242 -20 324 318 34 27 chr6 26658700 26658848 -155756394 - L2 LINE L2 -1 3312 3164 293 284 88 34 chr6 26659015 26659163 -155756079 + MLT1J LTR MaLR 1 156 -355 215 194 32 0 chr6 26659216 26659278 -155755964 + (TA)n Simple_repeat Simple_repeat 1 64 0 420 20 0 0 chr6 26659303 26659352 -155755890 + (CA)n Simple_repeat Simple_repeat 2 50 0 438 271 16 80 chr6 26659440 26659628 -155755614 + MLT1J LTR MaLR 328 503 -8 330 236 172 17 chr6 26659628 26659802 -155755440 + L1ME LINE L1 5270 5470 -889 1746 154 54 7 chr6 26661009 26661288 -155753954 + AluJb SINE Alu 1 292 -20 28 99 0 0 chr6 26661390 26661481 -155753761 + AT_rich Low_complexity Low_complexity 1 91 0 527 221 131 14 chr6 26662085 26662115 -155753127 + MER5B DNA MER1_type 17 42 -136 2018 75 0 8 chr6 26662115 26662367 -155752875 - AluSc SINE Alu -14 295 46 527 221 131 14 chr6 26662367 26662481 -155752761 + MER5B DNA MER1_type 42 178 0 22 0 0 0 chr6 26662674 26662696 -155752546 + AT_rich Low_complexity Low_complexity 1 22 0 726 206 0 8 chr6 26662696 26662822 -155752420 - FLAM_C SINE Alu -17 126 2 249 333 56 0 chr6 26663026 26663134 -155752108 - MIR SINE MIR -74 188 75 1795 182 0 10 chr6 26663802 26664110 -155751132 - AluJb SINE Alu -7 305 1 1103 145 70 35 chr6 26664194 26664394 -155750848 + AluJo SINE Alu 83 289 -23 544 306 57 26 chr6 26664657 26664886 -155750356 + MIR SINE MIR 21 256 -6 26 0 0 0 chr6 26665784 26665810 -155749432 + AT_rich Low_complexity Low_complexity 1 26 0 579 119 0 36 chr6 26666249 26666333 -155748909 + AluJ/FLAM SINE Alu 2 82 -230 2124 120 13 3 chr6 26666401 26666701 -155748541 + AluSx SINE Alu 1 303 -9 473 331 137 7 chr6 26666705 26666989 -155748253 + L1ME LINE L1 5484 5804 -317 1937 142 0 0 chr6 26667011 26667286 -155747956 + AluSx SINE Alu 22 296 -16 282 374 82 0 chr6 26667559 26667730 -155747512 - L3b LINE CR1 -126 1457 1273 1854 183 0 3 chr6 26668027 26668339 -155746903 + AluJo SINE Alu 1 311 -1 2254 112 0 0 chr6 26668357 26668651 -155746591 + AluSx SINE Alu 1 294 -18 240 239 15 60 chr6 26669015 26669082 -155746160 + MIR SINE MIR 38 101 -107 34 42 0 0 chr6 26669972 26670020 -155745222 + AT_rich Low_complexity Low_complexity 1 48 0 35 63 0 0 chr6 26670664 26670727 -155744515 + AT_rich Low_complexity Low_complexity 1 63 0 357 24 0 0 chr6 26671429 26671471 -155743771 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1977 106 0 63 chr6 26671471 26671772 -155743470 + AluSx SINE Alu 6 287 -25 378 282 120 7 chr6 26671791 26671933 -155743309 - MIR SINE MIR -2 260 103 611 146 31 0 chr6 26671940 26672036 -155743206 + FRAM SINE Alu 55 153 -23 186 239 0 22 chr6 26672509 26672555 -155742687 + MIR SINE MIR 107 151 -111 391 298 86 71 chr6 26672680 26672847 -155742395 + L1MEc LINE L1 511 674 -5722 743 202 16 0 chr6 26672847 26672976 -155742266 + FLAM_A SINE Alu 1 131 -2 391 298 86 71 chr6 26672976 26673147 -155742095 + L1MEc LINE L1 674 854 -5542 24 0 0 0 chr6 26673715 26673739 -155741503 + AT_rich Low_complexity Low_complexity 1 24 0 2438 84 0 0 chr6 26673739 26674050 -155741192 + AluY SINE Alu 1 311 0 370 0 40 0 chr6 26674074 26674124 -155741118 + (TG)n Simple_repeat Simple_repeat 1 52 0 2732 77 61 56 chr6 26674483 26674927 -155740315 + L1MA5A LINE L1 5846 6291 -6 24 53 0 0 chr6 26674929 26674967 -155740275 + AT_rich Low_complexity Low_complexity 1 38 0 1563 82 134 0 chr6 26674970 26675201 -155740041 + AluY SINE Alu 1 262 -49 963 106 0 0 chr6 26675203 26675345 -155739897 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 2083 133 0 10 chr6 26675349 26675651 -155739591 + AluSg SINE Alu 2 300 -10 193 79 184 0 chr6 26675819 26675857 -155739385 + MIR SINE MIR 212 256 -6 272 228 165 25 chr6 26675968 26676047 -155739195 + MIR SINE MIR 56 123 -85 1352 216 34 60 chr6 26676155 26676539 -155738703 + MLT1B LTR MaLR 6 379 -11 1090 24 16 0 chr6 26676598 26676725 -155738517 - AluY SINE Alu -1 310 182 198 103 0 0 chr6 26676748 26676777 -155738465 + (A)n Simple_repeat Simple_repeat 1 29 0 2169 99 21 0 chr6 26677077 26677361 -155737881 + AluSq SINE Alu 7 296 -17 1194 71 0 22 chr6 26677370 26677552 -155737690 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 285 246 66 0 chr6 26677639 26677700 -155737542 - L2 LINE L2 0 3313 3249 479 293 52 11 chr6 26677920 26678094 -155737148 + MIR SINE MIR 82 262 0 1382 217 82 85 chr6 26679557 26679664 -155735578 + MLT1E3 LTR MaLR 61 167 -459 1115 105 52 0 chr6 26679664 26679849 -155735393 + L1PA8 LINE L1 5994 6186 0 297 0 0 0 chr6 26679848 26679881 -155735361 + (GA)n Simple_repeat Simple_repeat 2 34 0 1382 217 82 85 chr6 26679849 26679883 -155735359 + MLT1E3 LTR MaLR 167 200 -426 1998 136 3 23 chr6 26679883 26680193 -155735049 + AluJb SINE Alu 1 304 -8 186 43 0 0 chr6 26680193 26680216 -155735026 + (GA)n Simple_repeat Simple_repeat 2 24 0 1382 217 82 85 chr6 26680216 26680514 -155734728 + MLT1E3 LTR MaLR 198 452 -174 535 189 0 9 chr6 26680633 26680739 -155734503 - L1ME1 LINE L1 -261 5905 5801 988 211 0 0 chr6 26680750 26680921 -155734321 - AluJb SINE Alu -5 307 137 2501 67 0 0 chr6 26680924 26681224 -155734018 - AluY SINE Alu -11 300 1 1279 231 16 37 chr6 26681227 26681604 -155733638 - L1M4 LINE L1 -1902 4244 3876 1092 251 31 25 chr6 26681601 26682048 -155733194 - L1M4 LINE L1 -2629 3517 3068 * 978 291 71 42 chr6 26682037 26682584 -155732658 - L1MEc LINE L1 -5795 601 39 * 1505 282 81 36 chr6 26682600 26683431 -155731811 - HAL1 LINE L1 -1542 965 98 2276 97 0 23 chr6 26683431 26683739 -155731503 - AluSg1 SINE Alu -8 301 1 200 360 0 0 chr6 26684316 26684402 -155730840 + (CCA)n Simple_repeat Simple_repeat 2 87 0 242 379 0 16 chr6 26684421 26684603 -155730639 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1666 172 41 0 chr6 26684670 26684960 -155730282 + AluJo SINE Alu 1 302 -10 1918 149 0 19 chr6 26685063 26685371 -155729871 - AluJb SINE Alu -10 302 1 912 173 78 31 chr6 26685768 26685959 -155729283 - L1MC2 LINE L1 -16 6328 6129 216 372 59 30 chr6 26686057 26686396 -155728846 + L2 LINE L2 1732 2080 -1234 279 0 0 0 chr6 26686410 26686441 -155728801 + (TC)n Simple_repeat Simple_repeat 2 32 0 845 230 5 58 chr6 26686445 26686636 -155728606 + MLT1F LTR MaLR 6 186 -356 211 265 0 0 chr6 26686690 26686739 -155728503 + L2 LINE L2 3261 3309 -4 2086 107 0 24 chr6 26687072 26687384 -155727858 + AluSx SINE Alu 1 305 0 234 263 84 31 chr6 26687405 26687522 -155727720 + MIR SINE MIR 33 139 -69 470 244 48 77 chr6 26687902 26688111 -155727131 - L1MC5 LINE L1 -32 7929 7727 729 174 0 41 chr6 26688694 26688815 -155726427 - FLAM_C SINE Alu -26 117 2 207 311 131 0 chr6 26689844 26689966 -155725276 - L2 LINE L2 -6 3307 3170 276 154 0 0 chr6 26691200 26691252 -155723990 + GA-rich Low_complexity Low_complexity 2 53 0 23 0 0 0 chr6 26691455 26691478 -155723764 + GC_rich Low_complexity Low_complexity 1 23 0 312 27 0 0 chr6 26693095 26693132 -155722110 + (CA)n Simple_repeat Simple_repeat 1 37 0 2463 82 0 0 chr6 26693791 26694097 -155721145 + AluSp SINE Alu 1 306 -7 265 211 276 0 chr6 26694619 26694695 -155720547 - Charlie7 DNA MER1_type -2515 97 1 294 288 234 49 chr6 26694710 26694936 -155720306 + L2 LINE L2 3005 3272 0 1999 137 0 17 chr6 26695676 26695976 -155719266 - AluSx SINE Alu -17 295 1 186 341 47 54 chr6 26696217 26696346 -155718896 + L2 LINE L2 3139 3266 -6 2190 116 7 3 chr6 26696386 26696688 -155718554 + AluSx SINE Alu 1 303 -9 1918 149 0 3 chr6 26697843 26698131 -155717111 - AluJo SINE Alu -25 287 1 724 130 0 0 chr6 26699392 26699492 -155715750 - HY3 scRNA scRNA -1 100 1 858 263 21 29 chr6 26699498 26699741 -155715501 - MIR SINE MIR -1 261 21 724 304 103 59 chr6 26699867 26700275 -155714967 - L2 LINE L2 -17 3255 2830 201 307 40 30 chr6 26700478 26700579 -155714663 + MIR SINE MIR 149 250 -12 565 215 74 13 chr6 26700832 26700981 -155714261 + MER103 DNA DNA 2 159 -7 3771 166 67 15 chr6 26701339 26702059 -155713183 - L1MD1 LINE L1 0 6242 5482 1771 146 11 8 chr6 26702059 26702327 -155712915 - AluJb SINE Alu -17 295 27 3771 166 67 15 chr6 26702327 26702341 -155712901 - L1MD1 LINE L1 -760 5482 5470 1287 131 49 134 chr6 26702764 26703070 -155712172 - AluJo SINE Alu -32 280 1 360 0 0 0 chr6 26705224 26705264 -155709978 + (TG)n Simple_repeat Simple_repeat 2 41 0 1474 194 25 0 chr6 26705344 26705623 -155709619 - AluJo SINE Alu -12 300 15 333 93 107 0 chr6 26705627 26705702 -155709540 + CT-rich Low_complexity Low_complexity 4 86 0 1700 178 14 0 chr6 26705704 26705980 -155709262 - AluJb SINE Alu -32 280 1 773 336 121 12 chr6 26706356 26706779 -155708463 - L3 LINE CR1 -11 1566 1098 21 36 0 0 chr6 26707172 26707200 -155708042 + AT_rich Low_complexity Low_complexity 1 28 0 379 206 213 62 chr6 26707276 26707436 -155707806 - L1ME LINE L1 -314 5807 5624 386 0 0 39 chr6 26708842 26708893 -155706349 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 279 0 0 0 chr6 26708894 26708925 -155706317 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 640 207 8 16 chr6 26708929 26709050 -155706192 - FLAM_A SINE Alu -13 120 1 796 271 9 9 chr6 26709931 26710149 -155705093 + MIR SINE MIR 45 262 0 21 0 0 0 chr6 26710228 26710249 -155704993 + AT_rich Low_complexity Low_complexity 1 21 0 2297 88 10 0 chr6 26710714 26711010 -155704232 - AluSp SINE Alu -14 299 1 2310 105 0 3 chr6 26711126 26711430 -155703812 - AluSx SINE Alu -9 303 1 962 197 22 75 chr6 26711488 26711652 -155703590 - MER20 DNA MER1_type -3 216 66 2322 92 0 10 chr6 26711652 26711955 -155703287 + AluSx SINE Alu 1 300 -12 962 197 22 75 chr6 26711955 26712018 -155703224 - MER20 DNA MER1_type -153 66 1 960 178 15 61 chr6 26712267 26712343 -155702899 + MER5A DNA MER1_type 1 79 -110 1732 165 62 0 chr6 26712343 26712634 -155702608 + AluSx SINE Alu 1 309 -3 960 178 15 61 chr6 26712634 26712754 -155702488 + MER5A DNA MER1_type 79 188 -1 204 229 21 0 chr6 26713618 26713666 -155701576 + MER5B DNA MER1_type 1 49 -129 24 0 0 0 chr6 26715200 26715224 -155700018 + AT_rich Low_complexity Low_complexity 1 24 0 369 282 69 95 chr6 26716065 26716327 -155698915 + L3 LINE CR1 1244 1498 -79 2451 127 3 9 chr6 26716327 26716666 -155698576 - MER1B DNA MER1_type 0 337 1 2335 174 46 60 chr6 26717884 26718183 -155697059 - L1MB4 LINE L1 -6 6174 5885 2151 159 0 26 chr6 26718183 26718528 -155696714 + MER1B DNA MER1_type 2 337 0 2335 174 46 60 chr6 26718528 26718813 -155696429 - L1MB4 LINE L1 -295 5885 5598 2217 93 10 7 chr6 26718838 26719139 -155696103 - AluSq SINE Alu -11 302 1 2304 96 3 3 chr6 26720336 26720638 -155694604 - AluSg SINE Alu -8 302 1 269 291 109 18 chr6 26720869 26720979 -155694263 - L2 LINE L2 -4 3268 3149 892 125 29 29 chr6 26721010 26721146 -155694096 - AluJo SINE Alu -176 136 1 877 164 105 0 chr6 26721183 26721335 -155693907 + AluSg/x SINE Alu 137 304 -8 2415 169 18 39 chr6 26721336 26721725 -155693517 - L1MB7 LINE L1 -28 6156 5779 2222 116 0 0 chr6 26721725 26722026 -155693216 - AluSg SINE Alu -9 301 1 2415 169 18 39 chr6 26722026 26722151 -155693091 - L1MB7 LINE L1 -405 5779 5653 226 356 10 29 chr6 26722219 26722323 -155692919 - L2 LINE L2 -176 3096 2995 963 249 33 4 chr6 26722330 26722575 -155692667 - MER112 DNA MER1_type -4 252 1 185 306 65 0 chr6 26722729 26722791 -155692451 - L2 LINE L2 0 3313 3248 1877 112 0 8 chr6 26722898 26723166 -155692076 + AluSx SINE Alu 42 307 -5 502 276 53 88 chr6 26723168 26723600 -155691642 + HAL1 LINE L1 16 432 -2075 234 0 0 0 chr6 26724864 26724890 -155690352 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr6 26725088 26725117 -155690125 + AT_rich Low_complexity Low_complexity 1 29 0 2242 75 0 0 chr6 26726178 26726445 -155688797 + AluSg SINE Alu 28 294 -16 264 243 0 0 chr6 26726476 26726550 -155688692 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 497 274 128 5 chr6 26726954 26727149 -155688093 - MIR SINE MIR -1 261 45 405 214 165 0 chr6 26727783 26727940 -155687302 + MER5A DNA MER1_type 4 189 0 2156 98 35 0 chr6 26728382 26728668 -155686574 - AluSx SINE Alu -16 296 1 21 0 0 0 chr6 26728668 26728689 -155686553 + AT_rich Low_complexity Low_complexity 1 21 0 621 168 47 0 chr6 26728689 26728796 -155686446 - HY1 scRNA scRNA 0 112 1 1403 183 55 48 chr6 26729103 26729393 -155685849 - AluJo SINE Alu -15 297 6 1281 179 50 56 chr6 26729521 26729823 -155685419 - AluJo SINE Alu -12 300 1 35 24 0 0 chr6 26731280 26731322 -155683920 + AT_rich Low_complexity Low_complexity 1 42 0 930 88 8 0 chr6 26731723 26731848 -155683394 - AluSg/x SINE Alu -8 304 179 297 266 11 11 chr6 26732429 26732523 -155682719 - MIR SINE MIR -2 260 167 1588 118 45 5 chr6 26732753 26732973 -155682269 + MER30 DNA MER1_type 1 229 -1 32 43 0 0 chr6 26733580 26733626 -155681616 + AT_rich Low_complexity Low_complexity 1 46 0 2320 83 7 0 chr6 26733626 26733916 -155681326 - AluY SINE Alu -19 292 1 663 192 15 15 chr6 26733919 26734049 -155681193 - FLAM_A SINE Alu -3 130 1 2215 120 0 0 chr6 26734081 26734381 -155680861 - AluSx SINE Alu -12 300 1 240 185 0 0 chr6 26734435 26734489 -155680753 + (CA)n Simple_repeat Simple_repeat 1 54 0 1733 104 0 89 chr6 26735260 26735540 -155679702 + AluJo SINE Alu 1 255 -57 398 247 297 27 chr6 26736539 26736940 -155678302 - L2 LINE L2 -1 3312 2804 398 287 255 30 chr6 26737606 26737837 -155677405 - L2 LINE L2 0 3313 3135 2166 97 3 3 chr6 26737837 26738126 -155677116 - AluSc SINE Alu -20 289 1 398 287 255 30 chr6 26738126 26738474 -155676768 - L2 LINE L2 -178 3135 2866 865 240 33 0 chr6 26738474 26738657 -155676585 + MER5A DNA MER1_type 1 189 0 398 287 255 30 chr6 26738657 26738774 -155676468 - L2 LINE L2 -447 2866 2460 492 132 29 0 chr6 26738793 26738861 -155676381 - AluSg/x SINE Alu -26 283 214 569 271 112 93 chr6 26738874 26739313 -155675929 - L2 LINE L2 -901 2413 1967 185 322 113 0 chr6 26739952 26740067 -155675175 - MIR SINE MIR -16 246 119 26 0 0 0 chr6 26740763 26740789 -155674453 + AT_rich Low_complexity Low_complexity 1 26 0 486 291 37 63 chr6 26741041 26741309 -155673933 + Charlie8 DNA MER1_type 1 261 -2156 944 96 0 89 chr6 26742516 26742662 -155672580 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr6 26742847 26742868 -155672374 + (T)n Simple_repeat Simple_repeat 1 21 0 321 378 41 12 chr6 26743373 26743545 -155671697 + L2 LINE L2 2581 2757 -557 671 126 0 63 chr6 26743986 26744097 -155671145 - FLAM_A SINE Alu -14 128 25 189 274 20 0 chr6 26744230 26744281 -155670961 - L2 LINE L2 0 3313 3262 786 266 154 11 chr6 26744286 26744662 -155670580 - L2 LINE L2 -631 2683 2254 417 86 0 0 chr6 26744693 26744751 -155670491 + (CA)n Simple_repeat Simple_repeat 2 59 0 293 231 128 60 chr6 26744865 26744982 -155670260 + MLT1K LTR MaLR 188 312 -276 417 173 36 101 chr6 26745167 26745239 -155670003 + MER103 DNA DNA 34 94 -72 1648 162 10 20 chr6 26745239 26745536 -155669706 + AluJo SINE Alu 1 294 -18 417 173 36 101 chr6 26745536 26745602 -155669640 + MER103 DNA DNA 94 163 -3 32 0 0 0 chr6 26746586 26746618 -155668624 + AT_rich Low_complexity Low_complexity 1 32 0 671 222 162 0 chr6 26748383 26748568 -155666674 + MIR SINE MIR 8 222 -40 283 238 0 60 chr6 26748635 26748719 -155666523 + L2 LINE L2 3234 3312 -1 2111 99 0 0 chr6 26749965 26750238 -155665004 + AluSx SINE Alu 33 305 -7 287 182 152 15 chr6 26751713 26751779 -155663463 + MIR SINE MIR 50 124 -138 243 0 0 0 chr6 26752736 26752763 -155662479 + (T)n Simple_repeat Simple_repeat 1 27 0 645 278 45 10 chr6 26753015 26753213 -155662029 - MIR SINE MIR -27 235 31 2004 112 29 0 chr6 26753400 26753678 -155661564 + AluSx SINE Alu 1 286 -26 318 232 126 46 chr6 26754218 26754369 -155660873 - MIR3 SINE MIR -41 167 5 281 259 0 0 chr6 26754408 26754462 -155660780 + MIR SINE MIR 23 76 -186 214 350 0 38 chr6 26754713 26754793 -155660449 + L3b LINE CR1 1503 1579 -4 6431 269 131 27 chr6 26755389 26757570 -155657672 + L2 LINE L2 2 2591 -722 2159 131 0 0 chr6 26757570 26757875 -155657367 - AluSx SINE Alu -7 305 1 6431 269 131 27 chr6 26757875 26758672 -155656570 + L2 LINE L2 2591 3304 -9 1400 207 7 3 chr6 26759551 26759836 -155655406 - L1MD3 LINE L1 0 7995 7710 4594 159 43 47 chr6 26759922 26760099 -155655143 - MER6 DNA MER2_type 0 865 689 2181 84 28 0 chr6 26760099 26760385 -155654857 - AluSx SINE Alu -13 299 6 4594 159 43 47 chr6 26760385 26760460 -155654782 - MER6 DNA MER2_type -176 689 615 2393 98 0 0 chr6 26760460 26760767 -155654475 + AluSc SINE Alu 1 307 -2 4594 159 43 47 chr6 26760767 26761382 -155653860 - MER6 DNA MER2_type -250 615 1 301 305 31 31 chr6 26761426 26761554 -155653688 + Charlie8 DNA MER1_type 19 146 -2271 2371 100 0 0 chr6 26761684 26761985 -155653257 - AluSc SINE Alu -8 301 1 484 297 130 23 chr6 26762220 26762520 -155652722 + MER102b DNA MER1_type 2 333 -8 1568 172 45 3 chr6 26763048 26763366 -155651876 + MER33 DNA MER1_type 1 324 0 439 316 107 20 chr6 26763595 26763791 -155651451 + MIR SINE MIR 2 214 -48 476 241 193 0 chr6 26765162 26765341 -155649901 - MIR SINE MIR 0 262 45 877 194 74 69 chr6 26765841 26766058 -155649184 + MER20 DNA MER1_type 2 219 0 1610 157 7 65 chr6 26766122 26766428 -155648814 - AluJo SINE Alu -15 297 10 300 303 0 0 chr6 26766548 26766624 -155648618 + MLT1L LTR MaLR 374 449 -166 196 320 61 48 chr6 26766741 26766888 -155648354 - L3 LINE CR1 -127 1450 1302 1011 213 22 100 chr6 26767329 26767648 -155647594 + AluYb8 SINE Alu 11 304 -14 638 144 48 24 chr6 26767723 26767848 -155647394 - L1MB2 LINE L1 -1 6170 6043 2836 19 0 0 chr6 26768006 26768315 -155646927 - AluYb8 SINE Alu -9 309 1 1877 167 0 7 chr6 26769272 26769566 -155645676 + AluSx SINE Alu 15 306 -6 812 198 146 28 chr6 26773593 26773899 -155641343 + MSTC LTR MaLR 1 368 -59 213 159 0 0 chr6 26773920 26773964 -155641278 + A-rich Low_complexity Low_complexity 1 44 0 331 167 0 0 chr6 26773986 26774040 -155641202 + MSTC LTR MaLR 342 395 -1 2019 115 18 0 chr6 26774351 26774653 -155640589 + AluSx SINE Alu 1 307 0 2215 138 0 0 chr6 26774711 26775023 -155640219 + AluSx SINE Alu 1 312 0 274 192 333 33 chr6 26775149 26775269 -155639973 + MER103 DNA DNA 8 163 -3 1469 171 120 116 chr6 26775711 26775903 -155639339 - L1MD2 LINE L1 -34 6325 6135 1627 154 33 40 chr6 26775903 26776202 -155639040 - AluJb SINE Alu -15 297 1 1469 171 120 116 chr6 26776202 26776485 -155638757 - L1MD2 LINE L1 -224 6135 5840 2097 99 0 3 chr6 26776512 26776794 -155638448 - AluSq SINE Alu -3 310 30 273 325 49 41 chr6 26776810 26776933 -155638309 - MIR3 SINE MIR -73 135 12 21 36 0 0 chr6 26777033 26777061 -155638181 + AT_rich Low_complexity Low_complexity 1 28 0 1534 199 10 29 chr6 26777511 26777817 -155637425 - AluJb SINE Alu -12 300 1 1359 187 56 49 chr6 26777971 26778255 -155636987 - AluJo SINE Alu -26 286 1 990 265 70 40 chr6 26778257 26778631 -155636611 + L2 LINE L2 2928 3312 -1 2078 121 0 4 chr6 26779737 26780018 -155635224 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 26781338 26781359 -155633883 + AT_rich Low_complexity Low_complexity 1 21 0 14394 192 46 19 chr6 26782734 26785548 -155629694 - L1PB3 LINE L1 -7 6204 3469 2181 96 10 7 chr6 26785548 26785840 -155629402 - AluSc SINE Alu -16 293 1 14394 192 46 19 chr6 26785840 26788050 -155627192 - L1PB3 LINE L1 -2742 3469 964 2128 122 3 0 chr6 26788050 26788338 -155626904 - AluSq SINE Alu -24 289 1 14394 192 46 19 chr6 26788338 26789325 -155625917 - L1PB3 LINE L1 -5247 964 6 3877 269 82 30 chr6 26789294 26790856 -155624386 - L1PA15-16 LINE L1 -5223 1640 9 * 640 317 32 18 chr6 26790904 26791125 -155624117 + MIR SINE MIR 18 241 -21 191 219 0 0 chr6 26791175 26791207 -155624035 - L2 LINE L2 -96 3176 3145 291 259 86 12 chr6 26791299 26791380 -155623862 - MER91C DNA MER1_type -30 110 24 1097 219 27 5 chr6 26792224 26792443 -155622799 - MER58A DNA MER1_type 0 224 1 250 321 92 9 chr6 26792674 26792783 -155622459 - L2 LINE L2 -5 3267 3150 2060 223 60 75 chr6 26793294 26794056 -155621186 - MER21B LTR ERV1 -62 869 27 1754 124 0 0 chr6 26794061 26794295 -155620947 - AluSx SINE Alu -17 295 62 764 111 26 0 chr6 26794296 26794413 -155620829 - LTR12 LTR ERV1 -236 478 359 354 210 0 0 chr6 26794413 26794494 -155620748 - LTR30 LTR ERV1 -98 624 544 1471 94 27 50 chr6 26794498 26794772 -155620470 - LTR12 LTR ERV1 -440 1683 57 248 231 0 0 chr6 26794774 26794826 -155620416 - LTR30 LTR ERV1 -670 52 1 461 134 0 0 chr6 26794826 26794893 -155620349 - AluSx SINE Alu -246 67 1 574 183 29 0 chr6 26795557 26795661 -155619581 + U6 snRNA snRNA 1 107 0 2149 94 3 3 chr6 26795789 26796097 -155619145 - AluSx SINE Alu 0 308 1 444 333 62 35 chr6 26796917 26797061 -155618181 - L2 LINE L2 -7 3265 3118 322 336 93 22 chr6 26797194 26797420 -155617822 - L2 LINE L2 -451 2863 2622 306 260 0 83 chr6 26797447 26797543 -155617699 - L2 LINE L2 -5 3308 3221 21 57 0 0 chr6 26798084 26798119 -155617123 + AT_rich Low_complexity Low_complexity 1 35 0 1844 130 41 4 chr6 26798231 26798501 -155616741 - AluSx SINE Alu -32 280 1 1010 153 89 21 chr6 26798657 26798847 -155616395 + AluSg/x SINE Alu 98 300 -12 2382 73 10 7 chr6 26800077 26800377 -155614865 - AluSg SINE Alu -9 301 1 1526 186 0 44 chr6 26800380 26800696 -155614546 - AluJo SINE Alu 0 303 1 643 167 0 25 chr6 26801177 26801297 -155613945 - FLAM_A SINE Alu -14 128 12 23 0 0 0 chr6 26802067 26802090 -155613152 + AT_rich Low_complexity Low_complexity 1 23 0 336 111 0 0 chr6 26802096 26802150 -155613092 + (TA)n Simple_repeat Simple_repeat 2 55 0 1780 187 3 3 chr6 26802150 26802450 -155612792 - AluJb SINE Alu -12 300 1 2088 95 7 39 chr6 26802524 26802830 -155612412 - AluSx SINE Alu -16 296 1 534 157 0 111 chr6 26803408 26803561 -155611681 - MER3 DNA MER1_type -5 204 69 235 266 13 76 chr6 26803586 26803665 -155611577 - MIR SINE MIR -79 129 56 519 308 86 71 chr6 26804007 26804850 -155610392 + L2 LINE L2 2454 3313 0 474 347 129 20 chr6 26805099 26805586 -155609656 - L2 LINE L2 -562 2752 2213 21 0 0 0 chr6 26807675 26807696 -155607546 + AT_rich Low_complexity Low_complexity 1 21 0 505 117 0 0 chr6 26807752 26807829 -155607413 - U13 snRNA snRNA -27 77 1 2101 92 0 86 chr6 26808259 26808584 -155606658 + AluSc SINE Alu 1 297 -12 660 212 0 0 chr6 26808909 26809022 -155606220 + FLAM_A SINE Alu 2 114 -19 244 241 0 0 chr6 26810918 26810972 -155604270 - MER5A DNA MER1_type 0 189 136 444 123 0 0 chr6 26811647 26811720 -155603522 + (TG)n Simple_repeat Simple_repeat 2 74 0 832 313 153 10 chr6 26811815 26812215 -155603027 - L3 LINE CR1 -2 1575 1119 23 0 0 0 chr6 26812432 26812455 -155602787 + AT_rich Low_complexity Low_complexity 1 23 0 220 321 48 12 chr6 26812562 26812646 -155602596 - L2 LINE L2 -1 3271 3185 257 339 62 23 chr6 26812722 26812852 -155602390 + MIR SINE MIR 52 186 -76 2403 97 3 0 chr6 26812894 26813194 -155602048 + AluSp SINE Alu 1 301 -12 1442 132 117 60 chr6 26813215 26813496 -155601746 + AluJo SINE Alu 5 301 -11 549 245 7 60 chr6 26813907 26814058 -155601184 - MIR SINE MIR -64 198 56 187 167 0 0 chr6 26815895 26815925 -155599317 - L3 LINE CR1 -7 1570 1541 2549 77 0 0 chr6 26815970 26816281 -155598961 - AluSq SINE Alu -2 311 1 433 255 74 27 chr6 26816412 26816561 -155598681 - MIR3 SINE MIR -32 176 21 182 337 11 22 chr6 26816686 26816775 -155598467 - L2 LINE L2 -63 3209 3122 279 220 119 68 chr6 26819606 26819724 -155595518 + MIR SINE MIR 50 173 -89 594 302 80 9 chr6 26820584 26820796 -155594446 - MIR SINE MIR -4 258 32 22 0 0 0 chr6 26821708 26821730 -155593512 + AT_rich Low_complexity Low_complexity 1 22 0 262 293 35 9 chr6 26822006 26822122 -155593120 + (TA)n Simple_repeat Simple_repeat 1 119 0 245 267 70 35 chr6 26822211 26822297 -155592945 + MIR3 SINE MIR 85 173 -35 231 313 18 60 chr6 26822785 26822951 -155592291 + MIR SINE MIR 59 217 -45 662 192 181 6 chr6 26823348 26823525 -155591717 - MER3 DNA MER1_type 0 209 2 23 0 0 0 chr6 26823815 26823838 -155591404 + AT_rich Low_complexity Low_complexity 1 23 0 979 279 128 53 chr6 26823962 26824717 -155590525 + L2 LINE L2 2476 3309 -4 2278 107 3 0 chr6 26825208 26825506 -155589736 + AluSx SINE Alu 1 299 -13 526 294 29 7 chr6 26826709 26826845 -155588397 - L2 LINE L2 0 3272 3134 223 258 45 0 chr6 26826990 26827056 -155588186 - L2 LINE L2 -342 2930 2862 874 297 222 31 chr6 26827086 26828273 -155586969 - L2 LINE L2 -555 2759 1347 321 372 58 23 chr6 26828283 26828455 -155586787 - L2 LINE L2 -2129 1185 1008 527 244 160 6 chr6 26828543 26828699 -155586543 - MER5A DNA MER1_type -1 188 9 1834 156 30 7 chr6 26828699 26829001 -155586241 + AluJb SINE Alu 1 309 -3 182 278 44 56 chr6 26829007 26829097 -155586145 - L2 LINE L2 -2441 873 785 524 177 40 24 chr6 26829160 26829284 -155585958 - MIR SINE MIR -23 239 114 1036 183 75 11 chr6 26829792 26829999 -155585243 + AluJo SINE Alu 86 304 0 450 79 0 0 chr6 26830015 26830078 -155585164 + (TG)n Simple_repeat Simple_repeat 2 64 0 327 49 0 0 chr6 26831133 26831174 -155584068 + (TG)n Simple_repeat Simple_repeat 1 41 0 12517 162 31 43 chr6 26832185 26832521 -155582721 - Tigger1 DNA MER2_type 0 2418 2080 2325 91 3 0 chr6 26832521 26832817 -155582425 - AluSp SINE Alu -14 299 3 12517 162 31 43 chr6 26832817 26833092 -155582150 - Tigger1 DNA MER2_type -338 2080 1803 5995 52 1 3 chr6 26833092 26833841 -155581401 - L1PA6 LINE L1 -3 6151 5404 12517 162 31 43 chr6 26833841 26834249 -155580993 - Tigger1 DNA MER2_type -615 1803 1392 1964 88 44 15 chr6 26834249 26834522 -155580720 - AluY SINE Alu -10 301 21 12517 162 31 43 chr6 26834522 26835945 -155579297 - Tigger1 DNA MER2_type -1026 1392 3 318 320 56 118 chr6 26836928 26837538 -155577704 + L2 LINE L2 2716 3272 0 1539 146 100 0 chr6 26837627 26837887 -155577355 - AluJb SINE Alu -6 306 21 187 254 17 17 chr6 26837903 26837962 -155577280 - MIR SINE MIR -44 218 160 362 184 0 23 chr6 26839435 26839522 -155575720 + CT-rich Low_complexity Low_complexity 1 85 0 4537 198 71 47 chr6 26841062 26842447 -155572795 - Charlie1a DNA MER1_type -17 1438 21 770 244 98 10 chr6 26842867 26843072 -155572170 - MER58A DNA MER1_type -1 223 1 200 241 19 19 chr6 26844015 26844069 -155571173 + L2 LINE L2 3150 3203 -69 21 0 0 0 chr6 26845706 26845727 -155569515 + AT_rich Low_complexity Low_complexity 1 21 0 433 238 29 12 chr6 26845929 26846101 -155569141 + Charlie7 DNA MER1_type 2437 2611 -1 1355 78 16 11 chr6 26847042 26847233 -155568009 + AluSg/x SINE Alu 112 303 -7 817 233 75 17 chr6 26847406 26847646 -155567596 + MIR SINE MIR 6 259 -3 567 43 0 0 chr6 26847935 26848005 -155567237 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1117 162 16 117 chr6 26848029 26848276 -155566966 - AluJb SINE Alu -90 222 1 315 280 57 29 chr6 26849376 26849551 -155565691 - L1ME3A LINE L1 -310 5860 5681 288 197 30 0 chr6 26850068 26850134 -155565108 - MLT1G1 LTR MaLR 0 595 528 1419 224 35 17 chr6 26850297 26850972 -155564270 - L1ME LINE L1 -414 5752 5073 189 237 102 17 chr6 26851605 26851664 -155563578 + L2 LINE L2 3248 3311 -2 2687 30 0 0 chr6 26852544 26852847 -155562395 - AluY SINE Alu -8 303 1 388 290 84 19 chr6 26853061 26853216 -155562026 + MIR SINE MIR 63 227 -35 189 0 0 0 chr6 26853797 26853818 -155561424 + (A)n Simple_repeat Simple_repeat 1 21 0 1772 152 35 17 chr6 26853968 26854258 -155560984 + AluJb SINE Alu 1 295 -17 361 317 35 35 chr6 26855576 26855721 -155559521 + MIR3 SINE MIR 10 154 -54 223 321 49 0 chr6 26855727 26855808 -155559434 + L2 LINE L2 3229 3313 0 279 114 0 0 chr6 26858258 26858302 -155556940 + (TG)n Simple_repeat Simple_repeat 1 44 0 1588 174 0 25 chr6 26858302 26858578 -155556664 - AluJb SINE Alu -31 281 13 344 256 179 0 chr6 26858990 26859107 -155556135 + MIR SINE MIR 105 242 -20 219 362 54 27 chr6 26859079 26859228 -155556014 + L2 LINE L2 2926 3078 -194 * 1751 154 22 31 chr6 26859299 26859655 -155555587 - MLT1A1 LTR MaLR -12 353 1 382 293 53 23 chr6 26859663 26859796 -155555446 + L2 LINE L2 3136 3272 0 654 243 180 22 chr6 26860205 26860427 -155554815 + MIR SINE MIR 6 262 0 22 0 0 0 chr6 26860845 26860867 -155554375 + AT_rich Low_complexity Low_complexity 1 22 0 1508 201 142 102 chr6 26861488 26862010 -155553232 - MLT1E1 LTR MaLR -2 652 99 2274 143 55 31 chr6 26862010 26862430 -155552812 - Tigger2a DNA MER2_type -2 432 3 1508 201 142 102 chr6 26862430 26862533 -155552709 - MLT1E1 LTR MaLR -555 99 2 2381 66 0 26 chr6 26862836 26863140 -155552102 - AluY SINE Alu -15 296 1 1912 188 53 34 chr6 26863668 26863849 -155551393 + L1MB7 LINE L1 5411 5587 -597 2309 78 14 0 chr6 26863849 26864142 -155551100 + AluY SINE Alu 1 297 -14 1912 188 53 34 chr6 26864142 26864454 -155550788 + L1MB7 LINE L1 5587 5913 -271 2312 105 0 3 chr6 26865533 26865839 -155549403 + AluSc SINE Alu 1 305 -4 413 194 160 74 chr6 26866275 26866450 -155548792 - MER112 DNA MER1_type -6 254 65 1343 163 0 14 chr6 26866578 26866799 -155548443 - AluJo SINE Alu -8 304 87 653 279 25 0 chr6 26867027 26867188 -155548054 + MIR SINE MIR 33 197 -65 2237 105 0 0 chr6 26867241 26867537 -155547705 + AluY SINE Alu 1 296 -15 402 204 133 92 chr6 26867829 26868025 -155547217 - L1ME3 LINE L1 -84 6078 5875 * 1355 253 88 54 chr6 26868024 26869347 -155545895 - L1MEc LINE L1 -2629 3586 2219 53 0 0 0 chr6 26869347 26869400 -155545842 + AT_rich Low_complexity Low_complexity 1 53 0 412 216 125 68 chr6 26869400 26869451 -155545791 - L1MEc LINE L1 -4130 2266 2219 2011 78 37 0 chr6 26869451 26869720 -155545522 - AluY SINE Alu -2 309 31 412 216 125 68 chr6 26869720 26869844 -155545398 - L1MEc LINE L1 -4177 2219 2081 372 267 26 0 chr6 26869877 26869993 -155545249 - MER103 DNA DNA -45 121 3 28 61 0 0 chr6 26871155 26871204 -155544038 + AT_rich Low_complexity Low_complexity 1 49 0 182 299 178 9 chr6 26871862 26871969 -155543273 + L2 LINE L2 3139 3263 -9 497 303 147 9 chr6 26872008 26872226 -155543016 + MIR SINE MIR 1 248 -14 219 217 0 0 chr6 26872231 26872291 -155542951 + (CACCAT)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chr6 26872412 26872433 -155542809 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 147 34 0 chr6 26872496 26872789 -155542453 - AluJb SINE Alu -9 303 1 903 147 7 13 chr6 26873642 26873792 -155541450 + FRAM SINE Alu 22 170 -6 23 54 0 0 chr6 26873794 26873831 -155541411 + AT_rich Low_complexity Low_complexity 1 37 0 2110 90 0 63 chr6 26874143 26874466 -155540776 - AluSx SINE Alu 0 304 1 24 0 0 0 chr6 26874513 26874537 -155540705 + AT_rich Low_complexity Low_complexity 1 24 0 212 196 0 22 chr6 26875556 26875602 -155539640 + L2 LINE L2 3265 3309 -4 2115 110 0 0 chr6 26877616 26877927 -155537315 + AluSg SINE Alu 1 311 0 21 0 0 0 chr6 26878165 26878186 -155537056 + AT_rich Low_complexity Low_complexity 1 21 0 1735 180 0 0 chr6 26879147 26879496 -155535746 + AluJb SINE Alu 1 349 0 22 0 0 0 chr6 26880542 26880564 -155534678 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr6 26881392 26881433 -155533809 + AT_rich Low_complexity Low_complexity 1 41 0 913 248 116 25 chr6 26882147 26882465 -155532777 - MLT1I LTR MaLR 0 409 63 198 0 0 0 chr6 26882815 26882837 -155532405 + (TTA)n Simple_repeat Simple_repeat 2 23 0 362 20 0 0 chr6 26882856 26882905 -155532337 - L1PA3 LINE L1 0 6155 6107 356 266 75 0 chr6 26883002 26883096 -155532146 - MIR SINE MIR -3 259 159 24 0 0 0 chr6 26884082 26884106 -155531136 + AT_rich Low_complexity Low_complexity 1 24 0 357 24 0 0 chr6 26884270 26884312 -155530930 + (TG)n Simple_repeat Simple_repeat 2 43 0 2298 95 17 0 chr6 26884931 26885227 -155530015 + AluSx SINE Alu 1 301 -11 295 287 117 11 chr6 26885426 26885520 -155529722 - L2 LINE L2 0 3313 3210 494 264 29 14 chr6 26885987 26886127 -155529115 - MIR SINE MIR -36 226 85 501 286 21 16 chr6 26886127 26886316 -155528926 - LTR16A LTR ERVL 0 450 261 379 276 70 54 chr6 26887369 26887554 -155527688 - MIR3 SINE MIR -18 190 3 333 324 92 23 chr6 26888225 26888398 -155526844 - MIR3 SINE MIR -19 189 5 2194 88 27 10 chr6 26889502 26889798 -155525444 - AluY SINE Alu -10 301 1 389 354 25 6 chr6 26890107 26890268 -155524974 + MIR SINE MIR 73 236 -26 209 313 43 52 chr6 26890426 26890541 -155524701 + L2 LINE L2 3178 3291 -22 198 0 0 0 chr6 26890729 26890751 -155524491 + (A)n Simple_repeat Simple_repeat 1 22 0 180 135 0 0 chr6 26890976 26891013 -155524229 + (A)n Simple_repeat Simple_repeat 1 37 0 2212 83 24 0 chr6 26891018 26891306 -155523936 + AluSg1 SINE Alu 1 295 -14 274 233 14 0 chr6 26891735 26891808 -155523434 - MER116 DNA Mariner -6 74 1 222 320 117 16 chr6 26893529 26893657 -155521585 + MIR SINE MIR 13 153 -109 2054 153 0 7 chr6 26894191 26894492 -155520750 - AluSx SINE Alu -13 299 1 2069 118 17 0 chr6 26895008 26895282 -155519960 + AluSx SINE Alu 3 302 -10 181 0 0 0 chr6 26895282 26895302 -155519940 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 2069 118 17 0 chr6 26895302 26895314 -155519928 + AluSx SINE Alu 302 312 0 25 0 0 0 chr6 26895471 26895496 -155519746 + AT_rich Low_complexity Low_complexity 1 25 0 633 182 136 14 chr6 26896640 26896860 -155518382 - MER5C DNA MER1_type -12 312 66 758 171 0 0 chr6 26897161 26897278 -155517964 + FLAM_A SINE Alu 5 121 -12 281 167 0 0 chr6 26897576 26897624 -155517618 + L2 LINE L2 3261 3308 -5 25 0 0 0 chr6 26897786 26897811 -155517431 + AT_rich Low_complexity Low_complexity 1 25 0 1908 139 59 10 chr6 26898486 26898774 -155516468 - AluSx SINE Alu -10 302 1 400 237 79 9 chr6 26898869 26898983 -155516259 - MIR SINE MIR 0 262 141 2137 98 3 3 chr6 26899661 26899969 -155515273 + AluSx SINE Alu 1 308 0 560 192 29 0 chr6 26900096 26900200 -155515042 - U6 snRNA snRNA 0 107 1 643 167 0 25 chr6 26900990 26901110 -155514132 + FLAM_A SINE Alu 12 128 -14 343 319 159 22 chr6 26902536 26902718 -155512524 - MIR SINE MIR -33 229 23 210 255 20 0 chr6 26902860 26902911 -155512331 + MIR SINE MIR 31 82 -126 407 346 0 15 chr6 26903077 26903210 -155512032 - MIR SINE MIR -112 150 20 188 296 144 16 chr6 26903391 26903516 -155511726 - MIR SINE MIR -120 142 2 247 299 125 14 chr6 26904914 26905058 -155510184 - MIR3 SINE MIR -1 207 48 717 242 34 83 chr6 26905134 26905276 -155509966 - MIR SINE MIR 0 262 137 1611 184 21 7 chr6 26905276 26905559 -155509683 + AluJo SINE Alu 6 292 -20 717 242 34 83 chr6 26905559 26905680 -155509562 - MIR SINE MIR -125 137 12 221 309 0 18 chr6 26907199 26907254 -155507988 - MIR SINE MIR -186 76 23 284 297 14 0 chr6 26907276 26907350 -155507892 + MER81 DNA DNA 40 114 0 1084 151 0 0 chr6 26908139 26908298 -155506944 - FRAM SINE Alu -7 159 1 210 233 0 0 chr6 26908416 26908459 -155506783 + C-rich Low_complexity Low_complexity 6 48 0 203 237 10 41 chr6 26909020 26909117 -155506125 + (CAGAGA)n Simple_repeat Simple_repeat 4 97 0 984 218 43 0 chr6 26909285 26909496 -155505746 + MIR SINE MIR 2 221 -41 345 279 135 0 chr6 26909646 26909750 -155505492 + MIR3 SINE MIR 4 121 -87 409 296 82 0 chr6 26910749 26910908 -155504334 + MIR SINE MIR 77 248 -14 243 306 0 16 chr6 26911068 26911130 -155504112 - MIR SINE MIR -179 83 23 297 197 16 0 chr6 26911306 26911367 -155503875 + MER45 DNA AcHobo 62 123 -55 189 254 18 18 chr6 26912084 26912139 -155503103 + MIR SINE MIR 81 135 -73 654 238 12 41 chr6 26913910 26914082 -155501160 - MIR SINE MIR -73 189 23 6945 20 6 1 chr6 26914190 26915000 -155500242 + L1PA3 LINE L1 5339 6152 -3 310 295 22 14 chr6 26916193 26916332 -155498910 - L1ME3A LINE L1 -9 6161 6022 313 325 84 18 chr6 26917162 26917328 -155497914 + L2 LINE L2 2910 3086 -186 479 117 13 0 chr6 26919864 26919941 -155495301 + MADE1 DNA Mariner 1 78 -2 238 167 167 0 chr6 26920681 26920747 -155494495 - L1ME1 LINE L1 -5 6161 6085 5459 218 56 56 chr6 26920760 26920907 -155494335 - L1ME1 LINE L1 -166 6000 5855 1208 84 6 0 chr6 26920907 26921073 -155494169 - L1PA10 LINE L1 -3 6165 5999 5459 218 56 56 chr6 26921073 26922766 -155492476 - L1ME1 LINE L1 -311 5855 4164 1489 221 63 16 chr6 26922766 26923210 -155492032 + LTR40c LTR ERVL 1 465 0 5459 218 56 56 chr6 26923210 26923591 -155491651 - L1ME1 LINE L1 -2002 4164 3785 2150 110 0 0 chr6 26923591 26923863 -155491379 - AluSc SINE Alu -25 284 13 5459 218 56 56 chr6 26923863 26924163 -155491079 - L1ME1 LINE L1 -2381 3785 3487 1756 184 0 3 chr6 26924163 26924462 -155490780 - AluJb SINE Alu -14 298 1 5459 218 56 56 chr6 26924462 26924747 -155490495 - L1ME1 LINE L1 -2679 3487 3213 994 26 0 0 chr6 26924747 26924864 -155490378 - L1PA3 LINE L1 -1 6154 6038 5459 218 56 56 chr6 26924864 26924979 -155490263 - L1ME1 LINE L1 -2953 3213 3100 279 54 0 0 chr6 26924995 26925032 -155490210 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr6 26925836 26925864 -155489378 + AT_rich Low_complexity Low_complexity 1 28 0 309 236 14 0 chr6 26930026 26930098 -155485144 - Charlie8 DNA MER1_type 0 2417 2345 2323 101 0 13 chr6 26930274 26930582 -155484660 + AluSx SINE Alu 1 304 -8 2017 146 0 26 chr6 26930653 26930962 -155484280 + AluJb SINE Alu 1 301 -11 823 301 49 0 chr6 26931008 26931254 -155483988 + MIR SINE MIR 5 262 0 363 322 34 14 chr6 26933514 26933678 -155481564 + MIR SINE MIR 32 192 -61 606 267 48 6 chr6 26934255 26934420 -155480822 + MIR3 SINE MIR 31 202 -6 26 0 0 0 chr6 26936439 26936465 -155478777 + AT_rich Low_complexity Low_complexity 1 26 0 3247 148 89 8 chr6 26937093 26937498 -155477744 - LTR51 LTR ERV1 0 671 197 2465 63 0 3 chr6 26937498 26937798 -155477444 + AluY SINE Alu 5 303 -8 3247 148 89 8 chr6 26937798 26938013 -155477229 - LTR51 LTR ERV1 -474 197 1 372 192 327 0 chr6 26938418 26938522 -155476720 + MER5A DNA MER1_type 51 188 -1 319 352 56 56 chr6 26938537 26938804 -155476438 + L2 LINE L2 2970 3236 -36 1696 171 45 4 chr6 26938837 26939106 -155476136 - AluJb SINE Alu -32 280 1 412 285 117 0 chr6 26939346 26939483 -155475759 - MIR SINE MIR -25 237 85 4344 219 75 21 chr6 26939641 26941981 -155473261 + L1MCb LINE L1 10 2595 -4150 2127 77 39 0 chr6 26942035 26942158 -155473084 + AluY SINE Alu 1 118 -193 414 0 0 0 chr6 26942158 26942204 -155473038 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2127 77 39 0 chr6 26942204 26942365 -155472877 + AluY SINE Alu 118 296 -15 239 150 38 25 chr6 26942469 26942549 -155472693 + CT-rich Low_complexity Low_complexity 1 81 0 1996 177 3 0 chr6 26942549 26942859 -155472383 - AluJo SINE Alu -1 311 1 22 0 0 0 chr6 26945436 26945458 -155469784 + AT_rich Low_complexity Low_complexity 1 22 0 360 297 114 29 chr6 26945489 26945664 -155469578 + HAL1 LINE L1 840 1029 -1478 1112 16 0 0 chr6 26945664 26945792 -155469450 + AluYb8 SINE Alu 191 318 0 390 281 43 110 chr6 26945792 26946236 -155469006 + HAL1 LINE L1 1017 1460 -1047 1413 148 30 25 chr6 26946244 26946481 -155468761 + AluSg1 SINE Alu 1 238 -71 341 317 38 11 chr6 26946958 26947141 -155468101 + HAL1b LINE L1 746 933 -415 304 241 124 22 chr6 26947405 26947542 -155467700 + HAL1b LINE L1 1190 1340 -8 2036 124 0 0 chr6 26947805 26948078 -155467164 - AluSx SINE Alu -39 273 1 973 90 8 0 chr6 26948094 26948228 -155467014 - AluSp/q SINE Alu 0 313 179 949 197 64 0 chr6 26948798 26948986 -155466256 - MER58A DNA MER1_type -1 223 24 260 122 41 0 chr6 26949020 26949069 -155466173 + GA-rich Low_complexity Low_complexity 3 53 0 695 272 29 24 chr6 26949303 26949509 -155465733 + MIR SINE MIR 8 214 -48 410 111 133 22 chr6 26950213 26950303 -155464939 - MLT2E LTR ERVL -19 609 510 21 36 0 0 chr6 26950522 26950550 -155464692 + AT_rich Low_complexity Low_complexity 1 28 0 369 277 25 25 chr6 26950604 26950723 -155464519 - L2 LINE L2 0 3313 3195 809 299 75 57 chr6 26951001 26951479 -155463763 + L3 LINE CR1 880 1366 -211 271 265 73 0 chr6 26953453 26953521 -155461721 + L2 LINE L2 3200 3272 0 247 304 0 14 chr6 26954368 26954437 -155460805 + MIR3 SINE MIR 9 76 -132 417 216 11 23 chr6 26954497 26954585 -155460657 + MER21B LTR ERV1 1 87 -776 2492 241 35 71 chr6 26954606 26955433 -155459809 + MER21B LTR ERV1 16 812 -51 1455 69 0 0 chr6 26955485 26955660 -155459582 + AluSp SINE Alu 136 310 -3 398 277 158 23 chr6 26957142 26957452 -155457790 - L1ME4a LINE L1 -1 6120 5769 2087 119 0 16 chr6 26957663 26957966 -155457276 - AluSx SINE Alu -14 298 1 229 231 108 39 chr6 26957966 26958096 -155457146 - L1P5 LINE L1 -711 5440 5302 22 0 0 0 chr6 26958354 26958376 -155456866 + AT_rich Low_complexity Low_complexity 1 22 0 235 265 188 30 chr6 26959071 26959243 -155455999 + MIR3 SINE MIR 5 203 -5 448 293 53 60 chr6 26960077 26960614 -155454628 + L1MEd LINE L1 1044 1579 -4550 360 0 0 0 chr6 26960614 26960654 -155454588 + (CA)n Simple_repeat Simple_repeat 2 41 0 448 293 53 60 chr6 26960654 26960762 -155454480 + L1MEd LINE L1 1579 1686 -4443 813 195 100 0 chr6 26960919 26961109 -155454133 - MER3 DNA MER1_type 0 209 1 914 292 87 20 chr6 26961328 26961975 -155453267 + L1MEd LINE L1 2350 3039 -3090 679 301 15 0 chr6 26962166 26962365 -155452877 + L1MEd LINE L1 4036 4237 -1892 510 146 0 27 chr6 26962425 26962699 -155452543 + AluJo SINE Alu 1 312 0 483 283 95 61 chr6 26962699 26962775 -155452467 + L1MEd LINE L1 4308 4380 -1749 2002 119 0 27 chr6 26962775 26963069 -155452173 + AluSx SINE Alu 1 286 -26 483 283 95 61 chr6 26963069 26963550 -155451692 + L1MEd LINE L1 4380 4884 -1245 354 296 103 13 chr6 26964796 26964953 -155450289 + MIR SINE MIR 21 191 -71 209 345 0 82 chr6 26965126 26965236 -155450006 - MIR SINE MIR -66 142 42 515 281 62 16 chr6 26965893 26966109 -155449133 - MIR SINE MIR -13 249 22 286 237 23 107 chr6 26966102 26966233 -155449009 + MIR SINE MIR 71 190 -72 * 207 0 0 0 chr6 26968049 26968072 -155447170 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 236 14 69 chr6 26968861 26968933 -155446309 - MER5A DNA MER1_type -78 111 44 355 259 71 0 chr6 26971184 26971296 -155443946 + MER5C DNA MER1_type 205 324 0 333 0 0 0 chr6 26971390 26971427 -155443815 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1860 145 14 0 chr6 26971428 26971704 -155443538 - AluSx SINE Alu -32 280 1 21 0 0 0 chr6 26972912 26972933 -155442309 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr6 26973487 26973510 -155441732 + AT_rich Low_complexity Low_complexity 1 23 0 620 288 135 5 chr6 26976483 26976705 -155438537 - MIR SINE MIR -10 252 2 30 27 0 0 chr6 26978019 26978056 -155437186 + AT_rich Low_complexity Low_complexity 1 37 0 2325 87 0 3 chr6 26978254 26978554 -155436688 - AluSg SINE Alu -11 299 1 233 284 45 57 chr6 26979641 26979729 -155435513 - L2 LINE L2 0 3313 3227 427 261 4 108 chr6 26979903 26980171 -155435071 - MER112 DNA MER1_type -13 247 8 202 204 20 20 chr6 26980989 26981038 -155434204 + L2 LINE L2 3218 3266 -6 2235 102 14 0 chr6 26981572 26981866 -155433376 + AluSc SINE Alu 1 298 -11 588 327 203 10 chr6 26981866 26982729 -155432513 + L2 LINE L2 2260 3301 -12 247 285 70 57 chr6 26983014 26983172 -155432070 - MIR SINE MIR -82 180 21 21 36 0 0 chr6 26984038 26984066 -155431176 + AT_rich Low_complexity Low_complexity 1 28 0 2386 39 32 0 chr6 26985988 26986270 -155428972 - AluY SINE Alu -19 292 2 1550 251 85 86 chr6 26987166 26988354 -155426888 + L1MC4 LINE L1 6854 8040 -2 1921 155 0 29 chr6 26988419 26988735 -155426507 + AluJb SINE Alu 1 307 -5 390 227 11 11 chr6 26989003 26989091 -155426151 - L2 LINE L2 -1 3271 3184 189 0 0 0 chr6 26989598 26989619 -155425623 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr6 26989817 26989841 -155425401 + AT_rich Low_complexity Low_complexity 1 24 0 277 302 43 35 chr6 26990381 26990497 -155424745 + L2 LINE L2 3189 3305 -8 313 257 140 14 chr6 26990660 26990874 -155424368 - L1ME2 LINE L1 -212 5952 5712 405 255 217 25 chr6 26990996 26991153 -155424089 - MIR SINE MIR -28 234 48 22 56 0 0 chr6 26992094 26992130 -155423112 + AT_rich Low_complexity Low_complexity 1 36 0 52 69 0 0 chr6 26995075 26995176 -155420066 + AT_rich Low_complexity Low_complexity 1 101 0 352 329 77 43 chr6 26998013 26998363 -155416879 + L2 LINE L2 1722 2083 -1231 412 261 82 67 chr6 26998959 26999207 -155416035 + MER34 LTR ERV1 7 470 -237 250 352 28 0 chr6 26999435 26999543 -155415699 + L2 LINE L2 3199 3309 -4 1770 156 0 41 chr6 27000023 27000343 -155414899 - AluJo SINE Alu 0 312 6 1527 217 78 56 chr6 27000428 27000904 -155414338 - MER39 LTR ERV1 0 787 6 10243 60 9 69 chr6 27001551 27003026 -155412216 - SVA Other Other 0 1386 1 258 105 0 0 chr6 27003039 27003077 -155412165 + (AGGGGG)n Simple_repeat Simple_repeat 3 40 0 1438 212 76 9 chr6 27003922 27004238 -155411004 - MER2 DNA MER2_type 0 345 9 666 277 136 44 chr6 27004244 27004583 -155410659 - MLT1J2 LTR MaLR 0 450 81 514 355 197 11 chr6 27005054 27005496 -155409746 - L3 LINE CR1 -1 1576 1011 1845 174 3 0 chr6 27005496 27005795 -155409447 - AluJb SINE Alu -12 300 1 514 355 197 11 chr6 27005795 27005899 -155409343 - L3 LINE CR1 -566 1011 928 272 325 72 46 chr6 27005979 27006173 -155409069 - MLT1J LTR MaLR -308 203 5 300 264 86 88 chr6 27006362 27006851 -155408391 - L1P LINE L1 -2368 3778 3291 564 349 28 5 chr6 27007059 27007274 -155407968 - L3 LINE CR1 -1001 576 357 347 273 30 0 chr6 27007770 27007869 -155407373 + MIR3 SINE MIR 86 187 -21 197 33 33 0 chr6 27008043 27008073 -155407169 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 667 210 70 61 chr6 27009529 27009758 -155405484 - MLT1L LTR MaLR -47 568 338 1085 189 0 6 chr6 27010658 27010838 -155404404 + MER5A DNA MER1_type 11 189 0 232 401 54 14 chr6 27011820 27011967 -155403275 + L2 LINE L2 3119 3271 -1 24 0 0 0 chr6 27012179 27012203 -155403039 + AT_rich Low_complexity Low_complexity 1 24 0 463 227 132 56 chr6 27012402 27012623 -155402619 - HAL1 LINE L1 -10 2497 2294 1118 152 123 5 chr6 27012623 27012834 -155402408 - MER46A DNA MER2_type 0 236 1 463 227 132 56 chr6 27012834 27012850 -155402392 - HAL1 LINE L1 -213 2294 2281 291 28 0 0 chr6 27012850 27012886 -155402356 + (CA)n Simple_repeat Simple_repeat 2 37 0 463 227 132 56 chr6 27012886 27012951 -155402291 - HAL1 LINE L1 -226 2281 2171 1386 190 152 51 chr6 27012953 27013348 -155401894 - MSTB2 LTR MaLR 0 457 23 3084 219 81 45 chr6 27013356 27014261 -155400981 - HAL1 LINE L1 -337 2170 1219 1768 178 0 3 chr6 27014261 27014547 -155400695 - AluJb SINE Alu -27 285 1 3084 219 81 45 chr6 27014547 27014698 -155400544 - HAL1 LINE L1 -1288 1219 1075 1460 259 146 29 chr6 27014755 27015480 -155399762 - HAL1 LINE L1 -1688 819 10 1031 268 68 40 chr6 27015615 27016015 -155399227 - LTR38 LTR ERV1 -9 547 137 1148 201 136 13 chr6 27016784 27017093 -155398149 - L1MA4 LINE L1 -8 6292 5946 352 221 116 0 chr6 27019110 27019196 -155396046 - MER96 DNA MER1_type? -19 156 61 24 0 0 0 chr6 27020074 27020098 -155395144 + AT_rich Low_complexity Low_complexity 1 24 0 1697 160 0 41 chr6 27020098 27020391 -155394851 - AluJo SINE Alu -31 281 1 706 180 48 24 chr6 27022753 27022920 -155392322 + MER58A DNA MER1_type 45 215 -9 891 195 11 32 chr6 27023001 27023186 -155392056 + FRAM SINE Alu 1 174 -2 368 207 278 30 chr6 27023394 27023563 -155391679 - MIR SINE MIR -18 244 34 1639 159 97 3 chr6 27024189 27024498 -155390744 + MER44D DNA MER2_type 1 608 -1 1270 137 75 62 chr6 27024905 27025132 -155390110 + MER30 DNA MER1_type 1 230 0 2391 81 0 0 chr6 27025192 27025487 -155389755 + AluY SINE Alu 1 295 -16 207 100 0 0 chr6 27025614 27025644 -155389598 + (CATG)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr6 27028652 27028684 -155386558 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr6 27032267 27032291 -155382951 + AT_rich Low_complexity Low_complexity 1 24 0 1647 163 7 28 chr6 27032293 27032581 -155382661 + AluJo SINE Alu 1 282 -30 252 86 0 0 chr6 27032601 27032636 -155382606 + (CATA)n Simple_repeat Simple_repeat 1 35 0 353 194 0 0 chr6 27033865 27033934 -155381308 + Alu SINE Alu 243 298 -4 252 0 0 0 chr6 27035741 27035769 -155379473 + (T)n Simple_repeat Simple_repeat 1 28 0 927 253 82 31 chr6 27037801 27038192 -155377050 + LTR16B LTR ERVL 54 464 0 1727 128 16 8 chr6 27038229 27038487 -155376755 + AluSx SINE Alu 34 293 -19 1602 243 38 16 chr6 27041944 27042397 -155372845 + Charlie4a DNA MER1_type 42 504 -4 2512 214 24 20 chr6 27042800 27043337 -155371905 - MER74A LTR ERVL 0 558 20 1693 143 11 8 chr6 27043344 27043609 -155371633 + AluSx SINE Alu 34 299 -13 321 297 108 40 chr6 27044965 27045113 -155370129 - L2 LINE L2 -16 3297 3140 1590 252 59 12 chr6 27045217 27045642 -155369600 + LTR16A LTR ERVL 1 445 -5 230 225 0 0 chr6 27046074 27046114 -155369128 - L2 LINE L2 -10 3262 3223 670 268 153 5 chr6 27046552 27046761 -155368481 - MIR SINE MIR -19 243 4 411 264 115 35 chr6 27047954 27048128 -155367114 + MIR SINE MIR 75 262 0 854 232 89 4 chr6 27048177 27048423 -155366819 + MER20B DNA MER1_type 384 650 -133 2477 154 21 39 chr6 27048431 27048594 -155366648 - L1MB8 LINE L1 0 6178 6014 2307 97 3 0 chr6 27048594 27048894 -155366348 + AluSq SINE Alu 1 301 -12 2477 154 21 39 chr6 27048894 27049249 -155365993 - L1MB8 LINE L1 -164 6014 5669 2100 149 7 0 chr6 27049278 27049579 -155365663 + AluJb SINE Alu 1 303 -9 2295 116 0 0 chr6 27049622 27049932 -155365310 + AluSg SINE Alu 1 310 0 458 191 0 0 chr6 27049951 27050035 -155365207 + MER20B DNA MER1_type 699 782 -1 445 349 92 5 chr6 27050046 27050264 -155364978 + MIR SINE MIR 20 256 -6 24 0 0 0 chr6 27051096 27051120 -155364122 + AT_rich Low_complexity Low_complexity 1 24 0 321 250 0 12 chr6 27051471 27051555 -155363687 + MER58B DNA MER1_type 257 339 -2 21 71 0 0 chr6 27053193 27053235 -155362007 + AT_rich Low_complexity Low_complexity 1 42 0 444 237 18 9 chr6 27053364 27053478 -155361764 + MLT1G1 LTR MaLR 123 237 -312 1953 141 81 60 chr6 27053505 27053972 -155361270 - MER31A LTR ERV1 -8 477 1 575 256 175 4 chr6 27053972 27054218 -155361024 + MLT1G1 LTR MaLR 251 538 -57 2209 94 3 26 chr6 27055079 27055421 -155359821 - AluSx SINE Alu 0 312 1 709 251 39 21 chr6 27055450 27055729 -155359513 - L1ME1 LINE L1 -5 6161 5878 271 287 116 61 chr6 27056370 27056534 -155358708 + L3 LINE CR1 782 954 -623 353 303 171 31 chr6 27056855 27057142 -155358100 + L3 LINE CR1 1188 1514 -63 1604 204 38 46 chr6 27057338 27057731 -155357511 - MLT1B LTR MaLR 0 390 1 275 277 43 76 chr6 27059291 27059475 -155355767 + MER5B DNA MER1_type 1 178 0 517 151 29 7 chr6 27059990 27060129 -155355113 + GA-rich Low_complexity Low_complexity 3 144 0 3255 96 16 2 chr6 27060299 27060341 -155354901 - MLT2A2 LTR ERVL 0 453 413 369 0 0 0 chr6 27060341 27060382 -155354860 + (CA)n Simple_repeat Simple_repeat 2 42 0 3255 96 16 2 chr6 27060382 27060786 -155354456 - MLT2A2 LTR ERVL -40 413 1 1073 293 91 45 chr6 27061070 27062744 -155352498 + L1ME4a LINE L1 410 2195 -4115 956 261 80 25 chr6 27062772 27063495 -155351747 + L1ME4a LINE L1 2253 3015 -3114 494 285 156 8 chr6 27064193 27064551 -155350691 + L1ME4a LINE L1 5477 5887 -217 344 252 13 77 chr6 27064561 27064716 -155350526 + L1ME4a LINE L1 5940 6084 -20 258 319 57 19 chr6 27065383 27065490 -155349752 + MER5B DNA MER1_type 1 131 -58 350 277 93 34 chr6 27066007 27066328 -155348914 - L1ME4a LINE L1 -24 6097 5758 581 295 75 10 chr6 27066676 27066876 -155348366 - MIR SINE MIR -2 260 48 850 158 17 0 chr6 27066889 27067066 -155348176 - L1MC3 LINE L1 -146 7639 7460 533 288 45 30 chr6 27067120 27067318 -155347924 - MIR SINE MIR -52 210 10 287 269 228 12 chr6 27067514 27067685 -155347557 - L3 LINE CR1 -160 1417 1210 22 56 0 0 chr6 27068978 27069014 -155346228 + AT_rich Low_complexity Low_complexity 1 36 0 247 232 34 57 chr6 27070433 27070610 -155344632 + (TCTCTG)n Simple_repeat Simple_repeat 6 178 0 * 294 275 9 59 chr6 27070534 27070785 -155344457 + CT-rich Low_complexity Low_complexity 1 238 0 210 344 90 8 chr6 27071645 27071767 -155343475 - MER5A DNA MER1_type -9 180 49 239 236 85 57 chr6 27073305 27073411 -155341831 + MIR SINE MIR 36 144 -64 289 174 29 0 chr6 27073661 27073730 -155341512 + (TA)n Simple_repeat Simple_repeat 2 72 0 2326 101 0 0 chr6 27074011 27074342 -155340900 - AluY SINE Alu 0 335 5 203 139 70 23 chr6 27075468 27075511 -155339731 + MIR SINE MIR 106 150 -58 484 248 17 0 chr6 27075752 27075869 -155339373 - MER70B LTR ERVL -345 233 115 210 354 0 10 chr6 27076115 27076214 -155339028 + MIR SINE MIR 159 256 -6 320 320 52 0 chr6 27076356 27076453 -155338789 + L2 LINE L2 3144 3245 -27 1045 194 107 0 chr6 27076456 27076672 -155338570 - MER70B LTR ERVL -339 239 1 305 181 60 72 chr6 27078878 27078961 -155336281 + L2 LINE L2 3232 3313 0 270 200 18 0 chr6 27079394 27079449 -155335793 + MIR SINE MIR 82 137 -125 587 289 20 40 chr6 27079465 27079666 -155335576 - MIR SINE MIR -12 250 54 335 336 30 0 chr6 27079706 27079837 -155335405 + MIR SINE MIR 128 262 0 605 319 61 13 chr6 27080339 27080568 -155334674 + MIR SINE MIR 2 241 -21 279 212 94 12 chr6 27080588 27080673 -155334569 + MIR SINE MIR 171 262 0 291 256 23 53 chr6 27081289 27081422 -155333820 - MER102a DNA MER1_type -26 304 176 316 229 70 96 chr6 27081934 27082024 -155333218 + L1ME4a LINE L1 5532 5623 -498 243 0 0 0 chr6 27082024 27082051 -155333191 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 316 229 70 96 chr6 27082051 27082065 -155333177 + L1ME4a LINE L1 5623 5636 -485 1902 128 3 51 chr6 27082065 27082378 -155332864 + AluSq SINE Alu 1 298 -15 316 229 70 96 chr6 27082378 27082543 -155332699 + L1ME4a LINE L1 5636 5795 -326 322 203 38 13 chr6 27082543 27082622 -155332620 - L2 LINE L2 -2 3311 3231 461 199 195 21 chr6 27082629 27082870 -155332372 + L1ME4a LINE L1 5794 6076 -45 26 0 0 0 chr6 27082884 27082910 -155332332 + AT_rich Low_complexity Low_complexity 1 26 0 334 220 199 7 chr6 27083028 27083169 -155332073 + L1ME4a LINE L1 5954 6121 0 368 260 96 7 chr6 27083621 27083805 -155331437 - L1MEd LINE L1 -4591 1972 1622 21 0 0 0 chr6 27083905 27083926 -155331316 + AT_rich Low_complexity Low_complexity 1 21 0 414 295 72 58 chr6 27084559 27084837 -155330405 - L1MEd LINE L1 -5750 622 336 2581 37 0 0 chr6 27084837 27085134 -155330108 + AluY SINE Alu 1 297 -14 414 295 72 58 chr6 27085134 27085218 -155330024 - L1MEd LINE L1 -6036 336 255 180 267 188 10 chr6 27086097 27086198 -155329044 + L2 LINE L2 3195 3313 0 455 301 110 32 chr6 27086470 27086689 -155328553 + MIR SINE MIR 7 242 -20 193 318 40 63 chr6 27088054 27088180 -155327062 + L2 LINE L2 2966 3088 -184 967 252 198 49 chr6 27088224 27088930 -155326312 - L2 LINE L2 -1 3312 2486 231 336 112 0 chr6 27088947 27089054 -155326188 + L2 LINE L2 3122 3240 -32 2535 138 21 19 chr6 27089774 27090201 -155325041 - MSTA LTR MaLR 0 428 1 304 226 19 75 chr6 27091039 27091145 -155324097 + LTR4 LTR ERV1 18 117 -479 473 259 39 29 chr6 27091430 27091635 -155323607 + LTR4 LTR ERV1 390 596 0 1891 260 111 58 chr6 27091795 27092904 -155322338 + L2 LINE L2 2132 3312 -1 21 0 0 0 chr6 27093572 27093593 -155321649 + AT_rich Low_complexity Low_complexity 1 21 0 497 225 45 9 chr6 27094396 27094507 -155320735 - L2 LINE L2 -8 3305 3191 250 212 45 0 chr6 27094537 27094603 -155320639 + MIR SINE MIR 84 152 -110 195 268 80 36 chr6 27096002 27096114 -155319128 + MIR SINE MIR 90 206 -56 664 237 90 12 chr6 27097459 27097782 -155317460 + MLT1I LTR MaLR 1 392 -17 1926 254 77 16 chr6 27099511 27100120 -155315122 - MER20B DNA MER1_type -82 701 56 515 188 0 62 chr6 27100320 27100432 -155314810 + MER8 DNA MER2_type 1 105 -134 2024 174 79 55 chr6 27100487 27100520 -155314722 + MLT1D LTR MaLR 1 32 -473 1704 173 48 0 chr6 27100520 27100640 -155314602 + AluSx SINE Alu 1 114 -198 188 35 35 0 chr6 27100640 27100669 -155314573 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1704 173 48 0 chr6 27100669 27100837 -155314405 + AluSx SINE Alu 114 303 -9 2024 174 79 55 chr6 27100837 27101296 -155313946 + MLT1D LTR MaLR 32 505 0 23 33 0 0 chr6 27101650 27101680 -155313562 + AT_rich Low_complexity Low_complexity 1 30 0 5194 191 46 16 chr6 27101734 27103678 -155311564 - L1MB7 LINE L1 -19 6663 4660 1141 237 206 21 chr6 27103651 27104268 -155310974 - L1MB7 LINE L1 -3948 2698 1968 * 1226 153 0 5 chr6 27104286 27104476 -155310766 - L1MB7 LINE L1 -5581 961 773 852 173 71 56 chr6 27104469 27104527 -155310715 - L1MB7 LINE L1 -6330 212 156 * 2399 57 0 3 chr6 27104527 27104823 -155310419 + AluY SINE Alu 1 295 -16 852 173 71 56 chr6 27104823 27104961 -155310281 - L1MB7 LINE L1 -6386 156 13 887 242 36 52 chr6 27106155 27106407 -155308835 + MIR SINE MIR 2 249 -13 24 0 0 0 chr6 27106646 27106670 -155308572 + AT_rich Low_complexity Low_complexity 1 24 0 608 261 7 0 chr6 27109069 27109211 -155306031 - MER58A DNA MER1_type 0 143 1 238 330 92 9 chr6 27109443 27109552 -155305690 - L2 LINE L2 -5 3267 3150 646 246 85 16 chr6 27110059 27110307 -155304935 - MER21B LTR ERV1 -62 869 514 1798 223 41 27 chr6 27110953 27111195 -155304047 + L1M4 LINE L1 3902 4139 -2007 1681 219 63 16 chr6 27111195 27111639 -155303603 - LTR40c LTR ERVL 0 465 1 1798 223 41 27 chr6 27111639 27111952 -155303290 + L1M4 LINE L1 4139 4465 -1681 828 269 100 91 chr6 27112367 27113283 -155301959 - L2 LINE L2 -817 2497 1573 224 337 189 0 chr6 27113295 27113390 -155301852 + L2 LINE L2 3133 3245 -27 985 90 8 0 chr6 27113682 27113816 -155301426 + AluSp/q SINE Alu 179 313 0 2046 124 0 0 chr6 27113832 27114105 -155301137 + AluSx SINE Alu 1 273 -39 193 308 90 26 chr6 27115433 27115589 -155299653 + L2 LINE L2 2213 2378 -936 21 0 0 0 chr6 27116820 27116841 -155298401 + AT_rich Low_complexity Low_complexity 1 21 0 542 117 0 0 chr6 27116897 27116974 -155298268 - U13 snRNA snRNA -27 77 1 236 184 165 9 chr6 27117401 27117510 -155297732 + AluSc SINE Alu 6 131 -168 306 233 14 0 chr6 27118125 27118198 -155297044 + MER116 DNA Mariner 1 74 -6 2129 120 14 0 chr6 27118627 27118918 -155296324 - AluSx SINE Alu -15 297 3 2344 87 0 3 chr6 27119700 27120000 -155295242 - AluSg SINE Alu -11 299 1 228 239 0 0 chr6 27121180 27121226 -155294016 + GA-rich Low_complexity Low_complexity 2 47 0 343 246 0 0 chr6 27121593 27121654 -155293588 + G-rich Low_complexity Low_complexity 1 61 0 2892 127 87 30 chr6 27121957 27122254 -155292988 - Tigger1 DNA MER2_type 0 2418 2079 2329 91 3 0 chr6 27122254 27122550 -155292692 - AluSp SINE Alu -14 299 3 2892 127 87 30 chr6 27122550 27122756 -155292486 - Tigger1 DNA MER2_type -339 2079 1886 228 162 0 0 chr6 27122788 27122825 -155292417 - Tigger1 DNA MER2_type -520 1898 1862 2288 79 118 7 chr6 27122825 27123281 -155291961 - L1PA6 LINE L1 -3 6151 5645 503 115 83 10 chr6 27123562 27123658 -155291584 - AluY SINE Alu -207 104 2 794 186 90 6 chr6 27123662 27123839 -155291403 - L1M4 LINE L1 -582 5602 5411 2110 138 3 0 chr6 27124367 27124665 -155290577 + AluSx SINE Alu 1 299 -13 222 139 93 0 chr6 27125868 27125911 -155289331 - L2 LINE L2 0 3313 3267 2891 6 0 6 chr6 27176817 27177137 -155238105 - AluYb8 SINE Alu 0 318 1 322 106 0 0 chr6 27177282 27177329 -155237913 + L2 LINE L2 3267 3313 0 216 240 133 93 chr6 27178586 27178736 -155236506 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr6 27178809 27178863 -155236379 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr6 27178866 27178932 -155236310 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr6 27178932 27179398 -155235844 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr6 27179398 27179467 -155235775 - L2 LINE L2 -68 3204 3134 191 329 96 0 chr6 27181922 27181995 -155233247 + MIR SINE MIR 74 153 -109 1906 171 22 0 chr6 27182020 27182377 -155232865 + L1 LINE L1 4647 5011 -1135 14994 82 30 6 chr6 27182478 27184752 -155230490 - L1P LINE L1 -2473 3673 1347 1808 156 44 3 chr6 27184852 27185147 -155230095 - AluJo SINE Alu -5 307 1 2288 183 53 11 chr6 27185273 27185742 -155229500 + MLT1D LTR MaLR 4 492 -13 287 292 125 30 chr6 27186197 27186365 -155228877 - MIR SINE MIR -59 203 20 2020 120 3 55 chr6 27187121 27187446 -155227796 + AluSx SINE Alu 1 308 -4 206 286 36 0 chr6 27187501 27187557 -155227685 - MIR3 SINE MIR -40 168 111 201 365 58 19 chr6 27187918 27188074 -155227168 - MIR SINE MIR -81 181 20 317 318 139 20 chr6 27189020 27189171 -155226071 + MIR3 SINE MIR 17 185 -23 186 43 0 0 chr6 27189498 27189521 -155225721 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2111 130 3 0 chr6 27190153 27190454 -155224788 - AluSx SINE Alu -10 302 1 368 307 64 0 chr6 27191059 27191199 -155224043 - MIR SINE MIR -58 204 56 2271 81 7 7 chr6 27191710 27192007 -155223235 - AluSc SINE Alu -12 297 1 366 330 45 56 chr6 27192025 27192292 -155222950 - L3 LINE CR1 -59 1518 1255 2303 116 0 0 chr6 27192414 27192708 -155222534 - AluSx SINE Alu -14 298 5 1122 231 9 69 chr6 27193797 27194028 -155221214 + LTR37A LTR ERV1 18 214 -212 1955 123 33 0 chr6 27194028 27194325 -155220917 - AluSx SINE Alu 0 306 1 1122 231 9 69 chr6 27194325 27194525 -155220717 + LTR37A LTR ERV1 214 424 -2 240 171 29 29 chr6 27195160 27195230 -155220012 + T-rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr6 27195282 27195311 -155219931 + AT_rich Low_complexity Low_complexity 1 29 0 801 268 9 40 chr6 27196656 27196884 -155218358 - MIR SINE MIR -40 222 2 255 350 92 31 chr6 27197122 27197448 -155217794 + L2 LINE L2 2632 2977 -337 2497 49 23 0 chr6 27197512 27197816 -155217426 - AluY SINE Alu 0 311 1 21 0 0 0 chr6 27197881 27197902 -155217340 + AT_rich Low_complexity Low_complexity 1 21 0 663 221 33 11 chr6 27197909 27198090 -155217152 - MER112 DNA MER1_type -11 249 65 256 296 0 0 chr6 27198238 27198292 -155216950 + L2 LINE L2 3133 3186 -86 292 341 92 54 chr6 27199139 27199400 -155215842 + L2 LINE L2 2946 3216 -56 686 229 151 0 chr6 27200636 27200815 -155214427 - MIR SINE MIR -54 208 3 2088 122 7 14 chr6 27200861 27201155 -155214087 + AluSg SINE Alu 1 292 -18 405 0 0 0 chr6 27202063 27202108 -155213134 + (TA)n Simple_repeat Simple_repeat 2 46 0 800 265 59 0 chr6 27202111 27202315 -155212927 - MIR SINE MIR -26 236 21 226 259 17 17 chr6 27202688 27202746 -155212496 - L2 LINE L2 -20 3293 3236 185 386 144 25 chr6 27202787 27203023 -155212219 - L2 LINE L2 -195 3077 2814 186 43 0 0 chr6 27203457 27203480 -155211762 + (CAA)n Simple_repeat Simple_repeat 2 24 0 646 296 6 11 chr6 27204031 27204210 -155211032 - MER5B DNA MER1_type 0 178 1 2098 249 141 24 chr6 27205390 27206161 -155209081 + L1ME3A LINE L1 5290 6143 -27 2470 75 0 3 chr6 27206274 27206580 -155208662 - AluY SINE Alu -6 305 1 290 290 46 8 chr6 27206976 27207107 -155208135 - MLT1L LTR MaLR -4 611 476 363 265 44 52 chr6 27207251 27207387 -155207855 - MLT1L LTR MaLR -358 257 123 281 234 94 39 chr6 27207490 27207618 -155207624 + L2 LINE L2 3073 3207 -106 285 29 0 0 chr6 27207759 27207793 -155207449 + (CA)n Simple_repeat Simple_repeat 1 34 0 550 286 70 24 chr6 27207875 27208162 -155207080 - HERVL LTR ERVL -369 5285 4986 1058 140 6 0 chr6 27208518 27208675 -155206567 + AluSg/x SINE Alu 118 275 -35 1869 228 16 53 chr6 27208708 27209103 -155206139 + MLT1B-int LTR MaLR 268 730 -641 1778 171 3 10 chr6 27209103 27209412 -155205830 - AluJb SINE Alu -5 307 1 1869 228 16 53 chr6 27209412 27209563 -155205679 + MLT1B-int LTR MaLR 730 885 -486 1453 140 16 102 chr6 27209692 27210006 -155205236 - AluY SINE Alu -14 297 11 1997 188 38 40 chr6 27210230 27210587 -155204655 + MLT1B-int LTR MaLR 1316 1673 -62 2319 84 0 3 chr6 27210587 27210884 -155204358 - AluY SINE Alu -15 296 1 1997 188 38 40 chr6 27210884 27210947 -155204295 + MLT1B-int LTR MaLR 1673 1735 0 1370 169 65 125 chr6 27210947 27211362 -155203880 + MLT1B LTR MaLR 1 390 0 1806 149 15 0 chr6 27211680 27211949 -155203293 + AluSx SINE Alu 1 273 -39 27 0 0 0 chr6 27212212 27212239 -155203003 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr6 27212281 27212305 -155202937 + AT_rich Low_complexity Low_complexity 1 24 0 915 112 0 8 chr6 27213118 27213243 -155201999 - AluSc SINE Alu -82 227 104 2015 113 0 38 chr6 27213245 27213537 -155201705 - AluSx SINE Alu -21 291 11 471 234 48 35 chr6 27214294 27214439 -155200803 + MIR SINE MIR 102 248 -14 2103 119 0 13 chr6 27215204 27215516 -155199726 + AluSx SINE Alu 1 308 -4 1039 198 90 12 chr6 27215516 27215859 -155199383 - Charlie5 DNA MER1_type -9 2603 2234 360 231 50 33 chr6 27215862 27215899 -155199343 - MER3 DNA MER1_type 6 168 133 1922 130 0 63 chr6 27215899 27216215 -155199027 + AluSx SINE Alu 1 296 -16 360 231 50 33 chr6 27216215 27216298 -155198944 - MER3 DNA MER1_type -29 133 46 1710 169 13 13 chr6 27218534 27218835 -155196407 - AluJb SINE Alu -11 301 1 222 37 0 0 chr6 27219017 27219044 -155196198 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2021 89 44 0 chr6 27219065 27219336 -155195906 - AluSp SINE Alu -30 283 1 335 272 72 16 chr6 27219623 27219748 -155195494 - LTR24B LTR ERV1 -45 531 400 2614 115 10 30 chr6 27219753 27220152 -155195090 + LTR22A LTR ERVK 68 458 0 9306 139 3 6 chr6 27220209 27221597 -155193645 + HERVK22 LTR ERVK 81 1464 -5373 4921 121 13 3 chr6 27221607 27222307 -155192935 + HERVK22 LTR ERVK 4587 5293 -1544 1650 145 4 0 chr6 27222301 27222543 -155192699 + HERVK22 LTR ERVK 6595 6837 0 * 3075 135 13 2 chr6 27222543 27222996 -155192246 + LTR22A LTR ERVK 1 458 0 2130 84 40 7 chr6 27223048 27223347 -155191895 + AluSq SINE Alu 1 309 -4 497 253 108 82 chr6 27224194 27224609 -155190633 - MER101 LTR ERV1 -36 438 13 1151 124 10 57 chr6 27226590 27226799 -155188443 + AluSx SINE Alu 15 213 -99 600 130 65 19 chr6 27226899 27227007 -155188235 + FRAM SINE Alu 63 175 -1 857 280 40 20 chr6 27227023 27227377 -155187865 + L1MC4a LINE L1 5572 5932 -1876 268 279 15 29 chr6 27227384 27227520 -155187722 + L1MC4a LINE L1 6131 6264 -1544 318 325 70 22 chr6 27227590 27227861 -155187381 + L1M4 LINE L1 3547 3830 -2316 181 270 75 80 chr6 27228114 27228314 -155186928 - L2 LINE L2 -223 3049 2851 486 185 0 93 chr6 27228600 27228708 -155186534 - MER63C DNA MER1_type 0 932 835 188 83 0 28 chr6 27228708 27228744 -155186498 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 2130 206 43 18 chr6 27228763 27229254 -155185988 - MER63C DNA MER1_type -189 741 239 280 238 16 0 chr6 27229220 27229283 -155185959 + MER63 DNA MER1_type 463 526 -534 * 280 257 43 0 chr6 27229535 27229605 -155185637 - MER63 DNA MER1_type -856 74 2 630 271 6 34 chr6 27230903 27231080 -155184162 + MLT1F LTR MaLR 1 172 -370 1615 178 76 54 chr6 27231730 27232084 -155183158 + MLT1A1 LTR MaLR 2 363 -2 600 252 128 4 chr6 27232344 27232570 -155182672 + L1MEd LINE L1 557 810 -5309 4196 186 21 48 chr6 27232662 27233658 -155181584 - LTR5 LTR ERVK 0 969 1 302 252 153 0 chr6 27233761 27233872 -155181370 - MLT1J LTR MaLR -52 459 332 753 292 102 22 chr6 27233925 27234240 -155181002 + MLT1I LTR MaLR 70 409 0 254 95 24 0 chr6 27234813 27234855 -155180387 + (GA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr6 27234983 27235004 -155180238 + AT_rich Low_complexity Low_complexity 1 21 0 1252 254 47 27 chr6 27235586 27235924 -155179318 + MLT1I LTR MaLR 63 407 -2 3666 141 83 23 chr6 27236288 27236850 -155178392 - Tigger3(Golem) DNA MER2_type -4 3024 2411 2603 58 0 0 chr6 27236850 27237159 -155178083 + AluY SINE Alu 1 309 -2 3666 141 83 23 chr6 27237159 27237292 -155177950 - Tigger3(Golem) DNA MER2_type -617 2411 2287 1486 308 186 17 chr6 27237371 27238417 -155176825 - L2 LINE L2 -338 2976 1754 411 68 0 0 chr6 27239204 27239263 -155175979 + (CA)n Simple_repeat Simple_repeat 2 60 0 917 294 182 21 chr6 27239843 27240552 -155174690 + L2 LINE L2 2223 3038 -275 5456 194 6 63 chr6 27242666 27243796 -155171446 - L1MEc LINE L1 -2691 3438 2356 416 92 0 0 chr6 27243796 27243861 -155171381 + Alu SINE Alu 245 309 -1 5456 194 6 63 chr6 27243861 27244021 -155171221 - L1MEc LINE L1 -3773 2356 2188 942 279 74 40 chr6 27244648 27245242 -155170000 - L1MEc LINE L1 -4868 1251 638 348 209 133 0 chr6 27245645 27245750 -155169492 - L1MEc LINE L1 -5976 143 25 313 378 14 62 chr6 27245820 27246029 -155169213 - MIR3 SINE MIR -6 202 4 364 247 12 12 chr6 27247153 27247234 -155168008 + MIR SINE MIR 2 82 -180 325 216 8 72 chr6 27248051 27248176 -155167066 - LTR33A LTR ERVL 0 523 407 644 298 19 19 chr6 27249426 27249634 -155165608 - MIR SINE MIR -4 258 51 76 78 0 0 chr6 27250237 27250404 -155164838 + AT_rich Low_complexity Low_complexity 1 167 0 2831 156 48 91 chr6 27250547 27251292 -155163950 + L1MC3 LINE L1 7065 7777 -8 486 269 53 41 chr6 27251565 27251736 -155163506 - MIR SINE MIR -57 205 33 277 319 0 50 chr6 27252716 27252835 -155162407 + L2 LINE L2 2393 2505 -809 239 234 0 0 chr6 27253443 27253490 -155161752 - L2 LINE L2 0 3313 3267 311 154 0 0 chr6 27253514 27253566 -155161676 + Alu SINE Alu 1 52 -251 1312 168 0 0 chr6 27253566 27253768 -155161474 + AluSg/x SINE Alu 109 310 0 672 298 92 5 chr6 27254811 27255029 -155160213 - MIR SINE MIR -17 245 9 2227 132 0 0 chr6 27255472 27255775 -155159467 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr6 27255808 27255837 -155159405 + AT_rich Low_complexity Low_complexity 1 29 0 260 83 0 0 chr6 27255851 27255887 -155159355 - MADE1 DNA Mariner -44 36 1 296 324 93 29 chr6 27256492 27256631 -155158611 + L2 LINE L2 3121 3268 -4 285 162 57 19 chr6 27257037 27257115 -155158127 - MLT1F LTR MaLR -26 523 438 245 281 116 71 chr6 27257096 27257320 -155157922 - MLT1F LTR MaLR -231 318 85 * 338 171 66 0 chr6 27258366 27258442 -155156800 - L1ME3A LINE L1 -8 6162 6082 269 282 117 55 chr6 27258937 27259100 -155156142 + MIR3 SINE MIR 8 180 -28 399 303 79 63 chr6 27259185 27259228 -155156014 - L1MC4a LINE L1 -1664 6144 6103 1991 143 0 7 chr6 27259228 27259528 -155155714 + AluSq SINE Alu 1 298 -15 399 303 79 63 chr6 27259528 27259609 -155155633 - L1MC4a LINE L1 -1705 6103 6025 1918 164 27 0 chr6 27259609 27259908 -155155334 - AluJb SINE Alu -5 307 1 399 303 79 63 chr6 27259908 27260099 -155155143 - L1MC4a LINE L1 -1783 6025 5823 996 256 92 48 chr6 27260106 27260564 -155154678 - L1MC4a LINE L1 -691 5473 5266 399 21 0 0 chr6 27261745 27261793 -155153449 + (CAA)n Simple_repeat Simple_repeat 2 49 0 703 331 100 46 chr6 27262710 27263169 -155152073 - L2 LINE L2 0 3313 2830 237 370 58 23 chr6 27264533 27264706 -155150536 - L2 LINE L2 -215 3098 2920 709 99 16 8 chr6 27265355 27265476 -155149766 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 1705 190 84 20 chr6 27265659 27266065 -155149177 - MSTB1 LTR MaLR 0 432 1 208 139 0 0 chr6 27267751 27267787 -155147455 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2343 150 20 12 chr6 27268463 27268869 -155146373 - MSTB LTR MaLR -16 410 2 1666 217 28 0 chr6 27269010 27269434 -155145808 + L1MB7 LINE L1 4057 4492 -1654 2891 205 31 16 chr6 27269469 27270486 -155144756 + L1MB7 LINE L1 4963 5986 -198 306 0 0 0 chr6 27271222 27271256 -155143986 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 789 142 8 30 chr6 27271386 27271520 -155143722 + AluJo SINE Alu 1 131 -171 3149 145 41 46 chr6 27271626 27272232 -155143010 + LTR26 LTR ERV1 1 603 0 2672 225 237 19 chr6 27272996 27273149 -155142093 + L1MC4 LINE L1 6459 6577 -1465 276 111 0 0 chr6 27273149 27273194 -155142048 + (TAGG)n Simple_repeat Simple_repeat 2 46 0 2672 225 237 19 chr6 27273194 27274225 -155141017 + L1MC4 LINE L1 6577 7901 -141 340 305 80 31 chr6 27274706 27274932 -155140310 + L1M4 LINE L1 3792 4028 -2118 1485 156 11 94 chr6 27276175 27276527 -155138715 + MER101 LTR ERV1 2 324 -150 635 107 0 0 chr6 27276533 27276617 -155138625 + AluS SINE Alu 8 91 -221 509 149 11 0 chr6 27276726 27276813 -155138429 + MER101 LTR ERV1 281 368 -106 898 342 77 24 chr6 27276835 27277417 -155137825 + L2 LINE L2 2364 2976 -338 273 309 115 23 chr6 27277620 27277837 -155137405 + L2 LINE L2 3033 3269 -44 757 200 41 0 chr6 27277892 27278062 -155137180 + Charlie4 DNA MER1_type 40 216 -1745 * 1849 200 60 14 chr6 27278054 27278500 -155136742 + MER101 LTR ERV1 6 472 -2 266 198 129 0 chr6 27278503 27278604 -155136638 + Charlie4 DNA MER1_type 1754 1867 -94 997 184 0 13 chr6 27280637 27280795 -155134447 + AluJo SINE Alu 134 289 -23 22 0 0 0 chr6 27280867 27280889 -155134353 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 28 0 chr6 27280889 27281033 -155134209 - L1M4 LINE L1 -1847 4299 4152 416 341 154 6 chr6 27281087 27281315 -155133927 + L2 LINE L2 1447 1640 -1674 194 0 39 0 chr6 27281315 27281341 -155133901 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 416 341 154 6 chr6 27281341 27281449 -155133793 + L2 LINE L2 1640 1833 -1481 871 239 59 63 chr6 27281740 27281791 -155133451 - L1MC5 LINE L1 -431 7530 7480 1831 105 20 0 chr6 27281791 27282038 -155133204 - AluSg SINE Alu -18 292 41 871 239 59 63 chr6 27282038 27282463 -155132779 - L1MC5 LINE L1 -481 7480 7056 380 279 184 35 chr6 27282467 27282891 -155132351 + L2 LINE L2 1825 2409 -905 392 321 48 36 chr6 27284315 27284673 -155130569 - L1MEd LINE L1 -5757 362 1 904 208 80 9 chr6 27286250 27286476 -155128766 + ORSL DNA AcHobo 13 254 -21 531 247 55 97 chr6 27286673 27287075 -155128167 - L1MDa LINE L1 -4506 2034 1651 2482 60 30 0 chr6 27287118 27287420 -155127822 - AluY SINE Alu 0 311 1 238 293 158 43 chr6 27287767 27287931 -155127311 + MIR SINE MIR 20 202 -60 583 317 66 21 chr6 27287962 27288205 -155127037 - MIR SINE MIR -6 256 3 8420 202 34 19 chr6 27288375 27290070 -155125172 + L1MA8 LINE L1 1787 3531 -2615 189 0 0 0 chr6 27290070 27290091 -155125151 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8420 202 34 19 chr6 27290091 27290768 -155124474 + L1MA8 LINE L1 3531 4197 -1949 4091 138 10 15 chr6 27290745 27291644 -155123598 + L1PB3 LINE L1 5024 5917 -237 * 5031 102 5 12 chr6 27291653 27292429 -155122813 - L1PB1 LINE L1 -5 6146 5376 1480 144 8 16 chr6 27292431 27292687 -155122555 + L1PB3 LINE L1 5899 6152 -2 4783 153 24 6 chr6 27292704 27293578 -155121664 + L1PB4 LINE L1 5259 6148 -8 5633 137 35 7 chr6 27293683 27295562 -155119680 + L1MA8 LINE L1 4364 6289 -2 198 0 0 0 chr6 27297744 27297766 -155117476 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2929 85 2 21 chr6 27297771 27298207 -155117035 - L1PA13 LINE L1 -20 6143 5716 671 199 35 14 chr6 27298394 27298535 -155116707 - L2 LINE L2 -3 3310 3167 314 252 79 47 chr6 27298534 27298661 -155116581 - MIR SINE MIR -65 197 67 * 741 196 27 45 chr6 27298726 27298885 -155116357 + L1MCa LINE L1 1042 1202 -5224 1923 124 0 11 chr6 27298885 27299167 -155116075 + AluSx SINE Alu 1 279 -33 399 21 0 0 chr6 27299167 27299215 -155116027 + (CA)n Simple_repeat Simple_repeat 1 48 0 741 196 27 45 chr6 27299215 27299278 -155115964 + L1MCa LINE L1 1200 1261 -5165 402 162 0 0 chr6 27299318 27299440 -155115802 + GA-rich Low_complexity Low_complexity 1 122 0 455 188 75 0 chr6 27299440 27299573 -155115669 + L1MCa LINE L1 1267 1409 -5017 248 213 33 0 chr6 27299590 27299651 -155115591 + LTR36 LTR ERV1 1 63 -548 1093 211 74 130 chr6 27299677 27300275 -155114967 + LTR36 LTR ERV1 48 611 0 230 121 155 0 chr6 27300275 27300333 -155114909 + L1MCa LINE L1 1432 1498 -4928 211 336 82 9 chr6 27300782 27300892 -155114350 - L2 LINE L2 -1407 1907 1790 187 256 56 44 chr6 27300917 27301007 -155114235 - L2 LINE L2 -1922 1392 1302 2390 90 0 3 chr6 27301032 27301332 -155113910 - AluSq SINE Alu -14 299 1 408 250 137 68 chr6 27301845 27302093 -155113149 - L3 LINE CR1 -174 1403 1139 790 333 61 37 chr6 27302194 27302654 -155112588 + LTR33 LTR ERVL 1 471 -50 266 269 103 0 chr6 27302660 27302738 -155112504 + MIR SINE MIR 78 163 -99 262 257 124 0 chr6 27302860 27302973 -155112269 + MER46C DNA MER2_type 167 293 -45 185 398 32 0 chr6 27303022 27303115 -155112127 + MIR SINE MIR 158 253 -9 2481 37 3 59 chr6 27304782 27305104 -155110138 + AluY SINE Alu 1 304 -7 200 35 35 0 chr6 27305661 27305690 -155109552 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3039 217 70 28 chr6 27307052 27307986 -155107256 - L1ME1 LINE L1 -76 6370 5400 518 191 88 41 chr6 27307995 27308142 -155107100 - L1M4 LINE L1 -1286 5140 4987 871 229 66 4 chr6 27308142 27308400 -155106842 + L1M4 LINE L1 5131 5404 -1022 406 200 10 0 chr6 27308397 27308497 -155106745 + L1ME2 LINE L1 1813 1913 -4513 * 31 44 0 0 chr6 27308574 27308619 -155106623 + AT_rich Low_complexity Low_complexity 1 45 0 873 254 80 48 chr6 27308635 27309013 -155106229 + L1ME2 LINE L1 2044 2392 -4034 * 1358 207 20 23 chr6 27309006 27309455 -155105787 - L1ME1 LINE L1 -3614 2812 2367 2253 214 56 19 chr6 27309565 27310247 -155104995 - L1ME1 LINE L1 -4764 1662 956 21 0 0 0 chr6 27310912 27310933 -155104309 + AT_rich Low_complexity Low_complexity 1 21 0 437 219 110 32 chr6 27311271 27311426 -155103816 + L1ME2 LINE L1 5028 5194 -1232 819 224 103 29 chr6 27311435 27311716 -155103526 + L1ME2 LINE L1 5931 6232 -212 1417 163 36 42 chr6 27311716 27312022 -155103220 - MLT1E3 LTR MaLR -320 304 1 1022 228 43 120 chr6 27312022 27312465 -155102777 - MLT1E3-int LTR MaLR 0 1371 963 280 170 0 0 chr6 27312510 27312557 -155102685 - MLT1E3 LTR MaLR -577 47 1 21 36 0 0 chr6 27312588 27312616 -155102626 + AT_rich Low_complexity Low_complexity 1 28 0 233 305 15 66 chr6 27312618 27312815 -155102427 - L1 LINE L1 -2229 3917 3731 440 273 32 27 chr6 27312929 27313116 -155102126 + L1MC4a LINE L1 5695 5882 -1926 300 333 86 74 chr6 27313180 27313613 -155101629 + L1MEd LINE L1 66 503 -5616 376 273 252 0 chr6 27313823 27314061 -155101181 + L1MEd LINE L1 2860 3157 -2972 793 255 109 4 chr6 27315017 27315264 -155099978 + L1MCa LINE L1 1693 1965 -4461 278 207 24 24 chr6 27315633 27315715 -155099527 + (CATA)n Simple_repeat Simple_repeat 2 83 0 395 148 50 10 chr6 27316610 27316711 -155098531 + CT-rich Low_complexity Low_complexity 2 106 0 1409 205 52 0 chr6 27316907 27317175 -155098067 - AluJo SINE Alu -30 282 1 209 256 23 0 chr6 27317319 27317362 -155097880 + L2 LINE L2 3210 3253 -19 497 286 47 76 chr6 27317788 27318410 -155096832 - L1MC5 LINE L1 -44 7917 7314 261 235 84 94 chr6 27318559 27318641 -155096601 - L1MC4 LINE L1 -733 7228 7147 2543 56 0 0 chr6 27318641 27318943 -155096299 + AluY SINE Alu 1 302 -9 261 235 84 94 chr6 27318943 27319506 -155095736 - L1MC4 LINE L1 -814 7147 6612 467 321 24 45 chr6 27319713 27320003 -155095239 - LTR16C LTR ERVL -15 476 193 1921 143 155 41 chr6 27320003 27320046 -155095196 - LTR46 LTR ERV1 0 460 423 311 0 26 0 chr6 27320046 27320085 -155095157 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 320 0 25 0 chr6 27320084 27320124 -155095118 + (GA)n Simple_repeat Simple_repeat 2 42 0 1921 143 155 41 chr6 27320085 27320493 -155094749 - LTR46 LTR ERV1 -37 423 1 2181 115 0 3 chr6 27320493 27320806 -155094436 - LTR46-int LTR ERV1 0 6985 6674 432 284 57 60 chr6 27320908 27321157 -155094085 - HERV17 LTR ERV1 -446 8180 7014 * 9749 123 7 9 chr6 27321132 27322641 -155092601 - HERV17 LTR ERV1 -309 6676 5171 1172 334 59 10 chr6 27322694 27323377 -155091865 - HERV16 LTR ERVL -2023 3002 2296 384 271 100 56 chr6 27324321 27324728 -155090514 - LTR16C LTR ERVL 0 457 33 815 292 105 45 chr6 27325382 27325735 -155089507 + MER69 DNA AcHobo 35 408 -818 469 225 9 0 chr6 27325748 27325859 -155089383 + MER69 DNA AcHobo 1793 1904 -622 253 358 68 54 chr6 27326619 27327169 -155088073 + L2 LINE L2 1728 2298 -1016 1814 195 96 25 chr6 27327169 27327605 -155087637 + MLT1C LTR MaLR 1 467 0 253 358 68 54 chr6 27327605 27327961 -155087281 + L2 LINE L2 2298 2647 -667 605 279 191 16 chr6 27328688 27329122 -155086120 - LTR33 LTR ERVL -11 510 1 411 203 95 6 chr6 27330317 27330475 -155084767 + MER113 DNA MER1_type? 68 239 -282 1104 204 113 6 chr6 27330488 27330807 -155084435 + L1ME3 LINE L1 5691 6043 -119 2142 82 3 14 chr6 27330808 27331115 -155084127 - AluSc SINE Alu 0 304 1 5042 126 21 1 chr6 27331140 27331931 -155083311 - L1PA14 LINE L1 -17 6144 5338 22 0 0 0 chr6 27331931 27331953 -155083289 + AT_rich Low_complexity Low_complexity 1 22 0 4280 103 2 5 chr6 27331953 27332573 -155082669 - L1PB1 LINE L1 0 6151 5534 752 94 0 0 chr6 27332590 27332696 -155082546 - L1PB1 LINE L1 -680 5471 5366 2202 206 17 2 chr6 27332698 27333175 -155082067 + L1PB1 LINE L1 4885 5368 -778 503 164 77 0 chr6 27333166 27333270 -155081972 - L1PA14 LINE L1 -805 5369 5258 * 21 0 0 0 chr6 27333768 27333789 -155081453 + AT_rich Low_complexity Low_complexity 1 21 0 2825 250 125 76 chr6 27335280 27337615 -155077627 - L1MEc LINE L1 -738 5573 3355 2468 61 0 10 chr6 27337615 27337926 -155077316 - AluY SINE Alu -3 308 1 2825 250 125 76 chr6 27337926 27338671 -155076571 - L1MEc LINE L1 -2956 3355 513 247 296 14 14 chr6 27338697 27338768 -155076474 - L2 LINE L2 -77 3195 3125 290 205 4 129 chr6 27340232 27340368 -155074874 - L1ME LINE L1 -459 5662 5539 1514 209 7 29 chr6 27340439 27340746 -155074496 - AluJo SINE Alu -12 300 1 2264 100 0 3 chr6 27340774 27341074 -155074168 + AluSg SINE Alu 1 299 -11 1607 190 3 20 chr6 27341110 27341410 -155073832 + AluJo SINE Alu 1 295 -17 405 274 92 30 chr6 27341436 27341773 -155073469 - L1ME LINE L1 -752 5394 5061 301 330 39 0 chr6 27341834 27341937 -155073305 - MIR SINE MIR -123 139 33 233 333 32 63 chr6 27341972 27342224 -155073018 + L2 LINE L2 1442 1685 -1629 897 110 0 24 chr6 27342231 27342358 -155072884 - AluSg/x SINE Alu -22 290 167 185 0 40 0 chr6 27342386 27342411 -155072831 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 860 325 87 15 chr6 27342423 27342884 -155072358 + L2 LINE L2 1729 2222 -1092 649 230 97 0 chr6 27343533 27343698 -155071544 - MER63A DNA MER1_type -29 181 1 353 268 0 10 chr6 27344242 27344339 -155070903 - L1ME3A LINE L1 -284 5886 5791 253 224 13 26 chr6 27344988 27345064 -155070178 - L1MEd LINE L1 -5025 1094 1020 434 246 35 12 chr6 27346953 27347124 -155068118 + (TA)n Simple_repeat Simple_repeat 2 176 0 2719 272 150 19 chr6 27348090 27349270 -155065972 - L2 LINE L2 -55 3258 1942 389 127 84 0 chr6 27349275 27349346 -155065896 - MIR SINE MIR -77 185 109 187 340 50 10 chr6 27349789 27349889 -155065353 + MIR SINE MIR 138 241 -21 2172 254 31 20 chr6 27350219 27350806 -155064436 + MLT1E LTR MaLR 1 593 0 865 269 174 56 chr6 27351206 27351638 -155063604 + L2 LINE L2 2320 2802 -512 428 310 115 15 chr6 27352852 27353052 -155062190 + MIR SINE MIR 18 237 -25 2079 139 6 3 chr6 27353723 27354060 -155061182 - THE1B LTR MaLR -26 338 1 1433 204 3 19 chr6 27354060 27354378 -155060864 - L1ME1 LINE L1 -251 5915 5603 5367 24 3 3 chr6 27355232 27355863 -155059379 + L1PA4 LINE L1 5525 6155 0 1455 247 21 21 chr6 27356196 27356617 -155058625 - MER63 DNA MER1_type 0 1061 641 204 111 0 0 chr6 27356640 27356676 -155058566 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 225 0 56 chr6 27356676 27356765 -155058477 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 257 89 22 0 chr6 27356772 27356817 -155058425 + (TA)n Simple_repeat Simple_repeat 1 46 0 245 299 35 46 chr6 27358014 27358101 -155057141 - MIR SINE MIR -163 99 14 225 0 0 0 chr6 27358952 27358977 -155056265 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 1588 173 29 32 chr6 27360301 27360614 -155054628 + AluJo SINE Alu 1 312 0 22 35 0 0 chr6 27361916 27361945 -155053297 + AT_rich Low_complexity Low_complexity 1 29 0 598 297 99 33 chr6 27362028 27362634 -155052608 + L1M4 LINE L1 3964 4609 -1537 699 240 173 14 chr6 27362762 27362970 -155052272 - MIR SINE MIR -16 246 6 558 159 25 13 chr6 27363109 27363266 -155051976 + CT-rich Low_complexity Low_complexity 4 162 0 342 211 0 131 chr6 27364626 27364801 -155050441 - MER112 DNA MER1_type -101 159 8 371 61 0 0 chr6 27365785 27365834 -155049408 - MADE1 DNA Mariner 0 80 32 318 48 0 0 chr6 27365944 27365986 -155049256 - MADE1 DNA Mariner -38 42 1 252 0 0 0 chr6 27366673 27366701 -155048541 + (CA)n Simple_repeat Simple_repeat 2 29 0 2172 143 35 76 chr6 27367309 27367820 -155047422 + L1MA8 LINE L1 5800 6289 -2 21 0 0 0 chr6 27369001 27369022 -155046220 + AT_rich Low_complexity Low_complexity 1 21 0 642 85 0 21 chr6 27370292 27370386 -155044856 - THE1B LTR MaLR 0 364 273 1489 157 30 8 chr6 27370495 27370763 -155044479 - THE1B LTR MaLR -90 274 1 318 281 130 70 chr6 27370935 27371380 -155043862 - L1 LINE L1 -1472 4674 4203 1583 184 47 44 chr6 27371485 27371849 -155043393 - MLT1A1 LTR MaLR 0 365 1 608 278 28 84 chr6 27371949 27372233 -155043009 - REP3 LTR ERV -170 392 125 30 27 0 0 chr6 27372233 27372270 -155042972 + AT_rich Low_complexity Low_complexity 1 37 0 431 254 33 8 chr6 27372294 27372416 -155042826 - REP3 LTR ERV -437 125 1 21 36 0 0 chr6 27372589 27372617 -155042625 + AT_rich Low_complexity Low_complexity 1 28 0 388 252 65 7 chr6 27372701 27372856 -155042386 + HAL1 LINE L1 1505 1668 -839 384 338 56 8 chr6 27372901 27373167 -155042075 + L1MC/D LINE L1 5446 5724 -2084 537 230 36 24 chr6 27373177 27373342 -155041900 - MIR SINE MIR 0 262 96 258 280 0 32 chr6 27373503 27373596 -155041646 + MLT1I LTR MaLR 320 409 0 793 308 53 15 chr6 27374057 27374395 -155040847 - MLT1I LTR MaLR -33 376 26 26 30 0 0 chr6 27374966 27374999 -155040243 + AT_rich Low_complexity Low_complexity 1 33 0 476 208 120 8 chr6 27375788 27375913 -155039329 - MLT1I LTR MaLR -5 404 266 246 343 19 0 chr6 27375988 27376096 -155039146 - MLT1I LTR MaLR -240 169 60 489 323 139 11 chr6 27376441 27376809 -155038433 - L1MEd LINE L1 -5382 737 323 888 219 92 82 chr6 27377281 27377673 -155037569 - MSTD LTR MaLR 0 396 1 2467 67 3 10 chr6 27377730 27378043 -155037199 - AluSp SINE Alu -2 311 1 184 269 21 11 chr6 27378413 27378506 -155036736 + CT-rich Low_complexity Low_complexity 2 95 0 227 326 0 22 chr6 27378699 27378791 -155036451 - MLT1K LTR MaLR -339 249 160 302 248 19 76 chr6 27378944 27379101 -155036141 - MER112 DNA MER1_type -101 159 12 399 236 29 9 chr6 27379830 27379946 -155035296 + HsTC2 DNA Tc2 1273 1392 -506 2323 112 0 0 chr6 27381604 27381916 -155033326 - AluSx SINE Alu 0 312 1 2884 3 0 0 chr6 27381981 27382291 -155032951 + AluYa5 SINE Alu 1 310 -1 236 289 35 9 chr6 27382632 27382746 -155032496 - MLT1L LTR MaLR -4 611 495 314 265 44 52 chr6 27382907 27383043 -155032199 - MLT1L LTR MaLR -358 257 123 293 226 97 40 chr6 27383146 27383270 -155031972 + L2 LINE L2 3073 3203 -110 303 28 0 0 chr6 27383415 27383451 -155031791 + (CA)n Simple_repeat Simple_repeat 1 36 0 402 307 66 21 chr6 27383533 27383820 -155031422 - ERVL LTR ERVL -440 5324 5025 1783 181 88 38 chr6 27384119 27384538 -155030704 - MLT2B1 LTR ERVL -76 444 5 574 224 75 87 chr6 27384540 27384941 -155030301 + L1ME3A LINE L1 4746 5141 -1005 2177 185 91 33 chr6 27384956 27385508 -155029734 + L1MD3 LINE L1 7405 7988 -7 282 259 111 37 chr6 27385487 27385587 -155029655 + L1ME3A LINE L1 5931 6022 -148 * 1116 147 118 0 chr6 27385587 27385798 -155029444 - MER46A DNA MER2_type 0 236 1 282 259 111 37 chr6 27385798 27385913 -155029329 + L1ME3A LINE L1 6022 6162 -8 1847 174 7 3 chr6 27386047 27386341 -155028901 - AluJo SINE Alu -17 295 1 2209 120 0 0 chr6 27386949 27387240 -155028002 + AluSx SINE Alu 1 291 -21 1522 75 0 0 chr6 27387550 27387737 -155027505 + AluSg/x SINE Alu 115 301 -9 342 115 0 0 chr6 27388589 27388641 -155026601 - MLT2B1 LTR ERVL 0 520 469 472 294 125 0 chr6 27388677 27388861 -155026381 + L2 LINE L2 3102 3308 -5 21 0 0 0 chr6 27390005 27390026 -155025216 + AT_rich Low_complexity Low_complexity 1 21 0 2215 116 3 0 chr6 27390631 27390934 -155024308 + AluSx SINE Alu 1 304 -8 896 98 0 0 chr6 27391079 27391202 -155024040 - AluSg/x SINE Alu -2 310 188 363 252 0 10 chr6 27391282 27391385 -155023857 - Charlie2a DNA MER1_type -1 2861 2760 665 184 202 26 chr6 27391397 27391630 -155023612 - Charlie2a DNA MER1_type -1856 1006 733 443 202 233 45 chr6 27391772 27391995 -155023247 - Charlie2a DNA MER1_type -2515 347 83 434 277 102 73 chr6 27392157 27392568 -155022674 + HAL1b LINE L1 254 676 -672 607 215 97 0 chr6 27392605 27392749 -155022493 - MER96 DNA MER1_type? -16 159 2 748 187 0 8 chr6 27392958 27393092 -155022150 + FLAM_C SINE Alu 1 133 0 613 287 123 74 chr6 27393290 27393384 -155021858 + L1M4 LINE L1 3090 3178 -2968 2287 99 0 0 chr6 27393384 27393691 -155021551 + AluSx SINE Alu 1 307 0 613 287 123 74 chr6 27393691 27394415 -155020827 + L1M4 LINE L1 3178 3949 -2197 2488 69 0 3 chr6 27394896 27395202 -155020040 + AluY SINE Alu 1 305 -6 1780 249 145 23 chr6 27395315 27396065 -155019177 - L1ME3A LINE L1 -27 6143 5302 576 296 6 11 chr6 27397266 27397445 -155017797 + MER5B DNA MER1_type 1 178 0 183 61 0 82 chr6 27397987 27398036 -155017206 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 199 386 144 25 chr6 27398450 27398686 -155016556 + L2 LINE L2 2814 3077 -195 228 259 17 17 chr6 27398727 27398785 -155016457 + L2 LINE L2 3236 3293 -20 797 265 59 0 chr6 27399158 27399362 -155015880 + MIR SINE MIR 21 236 -26 297 0 0 0 chr6 27399365 27399398 -155015844 + (TA)n Simple_repeat Simple_repeat 1 33 0 2099 122 7 14 chr6 27400306 27400600 -155014642 - AluSg SINE Alu -18 292 1 690 235 151 0 chr6 27400646 27400825 -155014417 + MIR SINE MIR 3 208 -54 292 341 92 54 chr6 27402061 27402322 -155012920 - L2 LINE L2 -56 3216 2946 256 296 0 0 chr6 27403169 27403223 -155012019 - L2 LINE L2 -86 3186 3133 757 204 23 115 chr6 27403292 27403552 -155011690 + MER112 DNA MER1_type 14 249 -11 21 0 0 0 chr6 27403559 27403580 -155011662 + AT_rich Low_complexity Low_complexity 1 21 0 2558 40 23 0 chr6 27403645 27403947 -155011295 + AluY SINE Alu 1 309 -2 242 353 89 28 chr6 27404010 27404336 -155010906 - L2 LINE L2 -337 2977 2632 784 263 13 44 chr6 27404574 27404802 -155010440 + MIR SINE MIR 2 222 -40 232 271 57 0 chr6 27405103 27405173 -155010069 - HsTC2 DNA Tc2 -474 1424 1351 22 35 0 0 chr6 27406147 27406176 -155009066 + AT_rich Low_complexity Low_complexity 1 29 0 240 171 29 29 chr6 27406228 27406298 -155008944 + A-rich Low_complexity Low_complexity 1 70 0 1299 231 9 69 chr6 27406933 27407133 -155008109 - LTR37A LTR ERV1 -2 424 261 1967 120 33 0 chr6 27407133 27407430 -155007812 + AluSx SINE Alu 1 306 0 1299 231 9 69 chr6 27407430 27407661 -155007581 - LTR37A LTR ERV1 -165 261 18 2288 116 0 0 chr6 27408750 27409044 -155006198 + AluSx SINE Alu 5 298 -14 341 330 45 56 chr6 27409166 27409433 -155005809 + L3 LINE CR1 1255 1518 -59 2256 84 7 7 chr6 27409451 27409748 -155005494 + AluSc SINE Alu 1 297 -12 358 307 64 0 chr6 27410259 27410399 -155004843 + MIR SINE MIR 56 204 -58 2105 130 3 0 chr6 27411004 27411305 -155003937 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr6 27411937 27411960 -155003282 + (TTG)n Simple_repeat Simple_repeat 2 24 0 312 318 139 20 chr6 27412287 27412438 -155002804 - MIR3 SINE MIR -23 185 17 192 365 58 19 chr6 27413384 27413540 -155001702 + MIR SINE MIR 20 181 -81 207 286 36 0 chr6 27413901 27413957 -155001285 + MIR3 SINE MIR 111 168 -40 2013 120 3 55 chr6 27414012 27414337 -155000905 - AluSx SINE Alu -4 308 1 281 280 137 42 chr6 27415093 27415261 -154999981 + MIR SINE MIR 20 203 -59 2556 185 51 19 chr6 27415699 27416185 -154999057 - MLT1D LTR MaLR 0 505 4 1720 146 48 4 chr6 27416311 27416579 -154998663 + AluJo SINE Alu 1 280 -32 719 35 53 9 chr6 27416579 27416692 -154998550 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 357 286 34 50 chr6 27416936 27417018 -154998224 + L2 LINE L2 3197 3278 -35 1921 198 54 9 chr6 27417018 27417367 -154997875 + MLT1A1 LTR MaLR 1 365 0 357 286 34 50 chr6 27417367 27417403 -154997839 + L2 LINE L2 3278 3313 0 2196 68 0 30 chr6 27417634 27417929 -154997313 + L1PA10 LINE L1 5881 6166 -2 2066 117 7 0 chr6 27417965 27418286 -154996956 - AluSx SINE Alu 0 323 1 230 245 92 31 chr6 27419054 27419152 -154996090 + L1ME LINE L1 5727 5830 -332 2098 123 3 7 chr6 27419384 27419685 -154995557 + AluSq SINE Alu 1 300 -13 216 231 0 0 chr6 27419805 27419857 -154995385 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 207 288 12 12 chr6 27419942 27420022 -154995220 + (CA)n Simple_repeat Simple_repeat 1 80 0 909 207 83 87 chr6 27421576 27421842 -154993400 + AluJo SINE Alu 2 266 -46 1173 233 52 39 chr6 27421842 27422147 -154993095 + MLT1E LTR MaLR 285 593 0 2060 131 0 7 chr6 27422728 27423046 -154992196 - AluSx SINE Alu 0 316 1 204 276 0 17 chr6 27423314 27423372 -154991870 - MER5B DNA MER1_type 0 178 122 204 244 0 0 chr6 27423496 27423541 -154991701 + MER5B DNA MER1_type 2 46 -132 696 96 0 0 chr6 27423543 27423637 -154991605 - AluSg/x SINE Alu -9 300 207 368 307 53 0 chr6 27423688 27423802 -154991440 - MER5B DNA MER1_type -57 121 2 288 0 0 0 chr6 27424464 27424496 -154990746 + (TG)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr6 27424495 27424518 -154990724 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1864 142 40 0 chr6 27424674 27424949 -154990293 + AluSq SINE Alu 1 286 -27 22 56 0 0 chr6 27424950 27424986 -154990256 + AT_rich Low_complexity Low_complexity 1 36 0 1572 198 3 22 chr6 27424988 27425302 -154989940 + AluJo SINE Alu 1 308 -4 638 228 264 36 chr6 27425312 27425728 -154989514 - L1MC4 LINE L1 0 8042 7532 360 298 0 0 chr6 27427234 27427338 -154987904 + L1M4 LINE L1 4060 4163 -1983 * 1546 223 19 123 chr6 27427332 27427620 -154987622 + L1M4 LINE L1 2133 2449 -3697 1597 127 0 0 chr6 27427620 27427841 -154987401 + AluSg/x SINE Alu 85 305 -7 1782 124 8 0 chr6 27427842 27428091 -154987151 + AluSx SINE Alu 46 296 -16 1546 223 19 123 chr6 27428091 27428469 -154986773 + L1M4 LINE L1 2448 2732 -3414 4047 174 19 7 chr6 27428476 27429208 -154986034 - L1MA5 LINE L1 0 6300 5560 1127 223 74 11 chr6 27429290 27429559 -154985683 - LTR43 LTR ERV1 -141 461 176 1902 120 0 28 chr6 27429755 27429945 -154985297 - L1MA5 LINE L1 -710 5587 5406 2704 98 8 22 chr6 27429945 27430312 -154984930 + THE1B LTR MaLR 3 364 0 1902 120 0 28 chr6 27430312 27430412 -154984830 - L1MA5 LINE L1 -891 5406 5305 748 206 0 8 chr6 27430412 27430543 -154984699 + FLAM_C SINE Alu 1 130 -3 674 255 35 4 chr6 27430568 27430823 -154984419 + L1M4 LINE L1 2791 3053 -3093 285 109 0 0 chr6 27430986 27431032 -154984210 + (GA)n Simple_repeat Simple_repeat 1 46 0 1837 171 3 10 chr6 27431103 27431408 -154983834 + AluJb SINE Alu 1 303 -9 254 299 69 0 chr6 27431430 27431517 -154983725 + L1MEd LINE L1 561 653 -5466 1885 109 67 4 chr6 27431620 27431936 -154983306 + AluSx SINE Alu 1 333 0 1685 226 72 77 chr6 27431978 27432449 -154982793 - L1MCa LINE L1 -4013 2594 2122 180 0 0 0 chr6 27432449 27432469 -154982773 + (TG)n Simple_repeat Simple_repeat 1 20 0 1944 151 0 0 chr6 27432469 27432748 -154982494 - AluSx SINE Alu -33 279 1 1685 226 72 77 chr6 27432748 27432978 -154982264 - L1MCa LINE L1 -4483 2124 1895 328 304 101 9 chr6 27433162 27433412 -154981830 - L1MCa LINE L1 -4714 1893 1459 2349 93 0 13 chr6 27433420 27433733 -154981509 - AluSg SINE Alu -1 309 1 1932 228 37 14 chr6 27433735 27434652 -154980590 - L1M4 LINE L1 -3320 3062 1088 227 233 11 111 chr6 27434652 27434742 -154980500 - Alu SINE Alu -7 294 214 3424 142 39 24 chr6 27434811 27434898 -154980344 - MER41B LTR ERV1 -35 600 516 2019 140 3 31 chr6 27434898 27435219 -154980023 + AluSx SINE Alu 1 312 0 1947 151 3 22 chr6 27435221 27435533 -154979709 + AluSx SINE Alu 1 306 -6 3424 142 39 24 chr6 27435533 27436033 -154979209 - MER41B LTR ERV1 -119 516 1 1413 115 10 0 chr6 27436033 27436225 -154979017 - MER41B-int LTR ERV1 0 5946 5753 357 154 0 29 chr6 27436227 27436292 -154978950 - Alu SINE Alu -254 48 1 2653 135 20 50 chr6 27436292 27436890 -154978352 - MER41B-int LTR ERV1 -3360 2586 1944 * 11541 122 39 11 chr6 27436869 27438596 -154976646 - MER41B-int LTR ERV1 -4171 1775 1 4428 148 2 2 chr6 27438596 27439231 -154976011 - MER41B LTR ERV1 0 635 1 1300 151 0 59 chr6 27439232 27439434 -154975808 - AluJo SINE Alu -88 224 36 3443 111 78 83 chr6 27439434 27439623 -154975619 + MER41B LTR ERV1 1 189 -446 1683 159 0 4 chr6 27439623 27439887 -154975355 + AluSx SINE Alu 1 263 -49 3443 111 78 83 chr6 27439887 27440335 -154974907 + MER41B LTR ERV1 189 635 0 1300 151 0 59 chr6 27440335 27440370 -154974872 - AluJo SINE Alu -276 36 1 26 50 0 0 chr6 27440374 27440414 -154974828 + AT_rich Low_complexity Low_complexity 1 40 0 2341 161 95 44 chr6 27440692 27441238 -154974004 - MER4B LTR ERV1 -36 574 1 1978 188 51 14 chr6 27441238 27441668 -154973574 - LTR29 LTR ERV1 -15 607 162 250 292 0 0 chr6 27441711 27441776 -154973466 - MER34 LTR ERV1 -457 85 21 2011 117 7 13 chr6 27441838 27442137 -154973105 + AluSx SINE Alu 2 298 -14 801 133 0 23 chr6 27442202 27442330 -154972912 - FLAM_C SINE Alu -13 130 6 810 256 19 0 chr6 27442461 27442621 -154972621 + FRAM SINE Alu 1 163 -3 1458 150 261 18 chr6 27442663 27442946 -154972296 + LTR29 LTR ERV1 1 382 -240 3051 123 103 0 chr6 27442946 27443400 -154971842 + MER61D LTR ERV1 1 501 0 1458 150 261 18 chr6 27443400 27443457 -154971785 + LTR29 LTR ERV1 382 424 -198 526 170 259 34 chr6 27443451 27443598 -154971644 + LTR49 LTR ERV1 416 595 0 * 277 179 43 57 chr6 27443811 27443951 -154971291 + (CA)n Simple_repeat Simple_repeat 2 139 0 434 323 133 9 chr6 27443995 27444326 -154970916 - L2 LINE L2 -19 3294 2923 3956 153 19 6 chr6 27444684 27444850 -154970392 - MER41B LTR ERV1 0 635 473 2167 129 49 52 chr6 27444850 27445215 -154970027 + THE1B LTR MaLR 1 364 0 3956 153 19 6 chr6 27445215 27445675 -154969567 - MER41B LTR ERV1 -162 473 1 266 143 26 91 chr6 27448051 27448128 -154967114 + LTR9 LTR ERV1 455 526 -86 904 137 48 24 chr6 27448252 27448420 -154966822 - LTR49 LTR ERV1 0 595 424 207 100 0 83 chr6 27448462 27448522 -154966720 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1184 146 3 113 chr6 27448556 27448857 -154966385 - LTR29 LTR ERV1 -218 404 137 401 232 71 0 chr6 27448839 27448938 -154966304 - MER34 LTR ERV1 -416 126 21 * 2126 124 3 3 chr6 27449032 27449331 -154965911 - AluSx SINE Alu -13 299 1 764 204 55 35 chr6 27449433 27449634 -154965608 + MER3 DNA MER1_type 1 205 -4 941 165 0 35 chr6 27449691 27449861 -154965381 + AluJb SINE Alu 134 297 -15 2190 68 24 20 chr6 27449863 27450158 -154965084 + AluSc SINE Alu 1 296 -13 1966 126 149 36 chr6 27450168 27450556 -154964686 + LTR23 LTR ERV1 1 432 -5 246 236 0 0 chr6 27450548 27450603 -154964639 - LTR29 LTR ERV1 -385 237 183 * 1712 184 23 3 chr6 27451744 27452049 -154963193 - AluJb SINE Alu -1 311 1 577 269 38 80 chr6 27452541 27452753 -154962489 + MIR SINE MIR 35 237 -25 377 373 12 28 chr6 27453200 27453455 -154961787 + MIR SINE MIR 12 262 0 31 26 0 0 chr6 27454122 27454160 -154961082 + AT_rich Low_complexity Low_complexity 1 38 0 2018 99 52 4 chr6 27454163 27454435 -154960807 - AluSc SINE Alu -24 285 1 613 65 13 0 chr6 27454563 27454640 -154960602 - MADE1 DNA Mariner 0 80 3 188 0 0 69 chr6 27454953 27454982 -154960260 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 647 116 0 0 chr6 27454982 27455068 -154960174 - LTR23 LTR ERV1 -32 405 320 183 42 0 0 chr6 27455634 27455658 -154959584 + (TG)n Simple_repeat Simple_repeat 1 24 0 1667 169 135 51 chr6 27455658 27456072 -154959170 - L1MB3 LINE L1 -16 6167 5719 262 294 272 22 chr6 27456442 27456578 -154958664 - MER91A DNA MER1_type -3 193 24 462 308 126 0 chr6 27457709 27457868 -154957374 + MIR SINE MIR 53 231 -31 978 223 28 87 chr6 27458112 27458225 -154957017 + MER46C DNA MER2_type 5 123 -215 2791 227 29 17 chr6 27458225 27458811 -154956431 - MLT1E LTR MaLR 0 593 1 978 223 28 87 chr6 27458811 27459052 -154956190 + MER46C DNA MER2_type 123 338 0 865 78 9 0 chr6 27459240 27459356 -154955886 - AluSg/x SINE Alu 0 310 194 1902 125 37 17 chr6 27459424 27459721 -154955521 - AluSx SINE Alu -9 303 1 207 105 26 0 chr6 27459746 27459784 -154955458 + T-rich Low_complexity Low_complexity 3 41 0 344 247 122 32 chr6 27459983 27460230 -154955012 - L1M3 LINE L1 -530 5804 5536 271 304 99 33 chr6 27460235 27460416 -154954826 - MIR SINE MIR 0 262 70 1734 177 0 10 chr6 27460502 27460790 -154954452 - AluJo SINE Alu -27 285 1 576 310 65 52 chr6 27460793 27461196 -154954046 - L1ME LINE L1 -393 5777 5370 936 96 8 0 chr6 27461470 27461595 -154953647 + FRAM SINE Alu 20 145 -31 2118 130 10 0 chr6 27461607 27461900 -154953342 + AluSx SINE Alu 1 296 -16 231 218 0 0 chr6 27461909 27461964 -154953278 + GA-rich Low_complexity Low_complexity 3 57 0 229 176 27 0 chr6 27462299 27462373 -154952869 + (TA)n Simple_repeat Simple_repeat 2 77 0 717 193 82 41 chr6 27462385 27462556 -154952686 - AluJo SINE Alu -37 275 98 785 168 69 58 chr6 27462736 27462887 -154952355 - AluJb SINE Alu -19 293 138 1907 157 0 10 chr6 27462887 27463187 -154952055 - AluJb SINE Alu -15 297 1 785 168 69 58 chr6 27463187 27463208 -154952034 - AluJb SINE Alu -174 138 119 201 169 56 11 chr6 27463287 27463376 -154951866 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 964 257 121 50 chr6 27463608 27464552 -154950690 - L1MEd LINE L1 -2659 3470 2460 2161 135 0 0 chr6 27464636 27464940 -154950302 - AluSx SINE Alu -8 304 1 366 287 59 0 chr6 27465112 27465213 -154950029 - L1MEd LINE L1 -5530 589 483 902 253 203 8 chr6 27465223 27465618 -154949624 - LTR33 LTR ERVL -49 472 1 218 235 176 47 chr6 27465916 27466001 -154949241 + MIR SINE MIR 30 125 -83 3098 122 63 87 chr6 27466188 27466795 -154948447 + LTR14B LTR ERVK 17 608 0 561 327 29 5 chr6 27466795 27467000 -154948242 - MIR SINE MIR -7 255 46 1780 138 11 14 chr6 27467023 27467328 -154947914 + AluSx SINE Alu 1 304 0 290 390 0 0 chr6 27467951 27468069 -154947173 + L2 LINE L2 3195 3312 -1 1601 132 25 0 chr6 27468816 27469051 -154946191 + AluSq SINE Alu 1 241 -72 1175 229 124 56 chr6 27469290 27469805 -154945437 + MER34B LTR ERV1 11 560 -5 29 60 0 0 chr6 27470111 27470161 -154945081 + AT_rich Low_complexity Low_complexity 1 50 0 1780 156 45 0 chr6 27470464 27470752 -154944490 + AluJb SINE Alu 1 301 -11 636 238 146 113 chr6 27470842 27471337 -154943905 - MLT1J LTR MaLR 0 511 1 1121 222 111 35 chr6 27471479 27471821 -154943421 - MLT1A2 LTR MaLR -1 373 6 5124 148 44 35 chr6 27471847 27472145 -154943097 - L1MC1 LINE L1 -107 6226 5932 2351 186 79 5 chr6 27472145 27472590 -154942652 + MER66A LTR ERV1 1 478 0 5124 148 44 35 chr6 27472590 27472703 -154942539 - L1MC1 LINE L1 -401 5932 5822 1661 117 98 12 chr6 27472703 27472959 -154942283 - AluSx SINE Alu 0 312 35 5124 148 44 35 chr6 27472959 27473567 -154941675 - L1MC1 LINE L1 -511 5822 5199 2284 142 62 55 chr6 27473567 27473739 -154941503 - Charlie5 DNA MER1_type -1391 1233 1064 901 142 8 15 chr6 27473739 27473873 -154941369 - FLAM_C SINE Alu 0 133 1 2284 142 62 55 chr6 27473873 27474229 -154941013 - Charlie5 DNA MER1_type -1560 1064 701 758 142 0 0 chr6 27474229 27474342 -154940900 - FLAM_C SINE Alu 0 143 31 1077 106 10 212 chr6 27474355 27474544 -154940698 - Charlie5 DNA MER1_type -1950 674 601 1783 143 25 7 chr6 27474544 27474823 -154940419 - AluJb SINE Alu -28 284 1 1077 106 10 212 chr6 27474823 27475019 -154940223 - Charlie5 DNA MER1_type -2023 601 367 31 26 0 0 chr6 27475019 27475057 -154940185 + AT_rich Low_complexity Low_complexity 1 38 0 200 321 138 0 chr6 27475486 27475595 -154939647 + MIR SINE MIR 59 182 -80 32 0 0 0 chr6 27475853 27475885 -154939357 + AT_rich Low_complexity Low_complexity 1 32 0 2038 129 3 10 chr6 27477603 27477905 -154937337 - AluSx SINE Alu -12 300 1 312 285 120 22 chr6 27477948 27478215 -154937027 - L1MC1 LINE L1 -1078 5068 4776 3106 199 79 37 chr6 27478921 27479289 -154935953 - L1ME1 LINE L1 -5 6161 5810 2083 124 24 0 chr6 27479289 27479579 -154935663 - AluSq SINE Alu -16 297 1 3106 199 79 37 chr6 27479579 27480131 -154935111 - L1ME1 LINE L1 -356 5810 5208 787 148 8 16 chr6 27480132 27480284 -154934958 - AluSg/x SINE Alu 0 310 173 1639 208 53 52 chr6 27480284 27480789 -154934453 - L1ME1 LINE L1 -945 5201 4696 2512 122 26 90 chr6 27480860 27480920 -154934322 - L1MA5A LINE L1 -10 6287 6225 192 40 0 0 chr6 27480920 27480945 -154934297 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2240 109 0 0 chr6 27480945 27481229 -154934013 - AluSx SINE Alu -28 284 1 2512 122 26 90 chr6 27481229 27481668 -154933574 - L1MA5A LINE L1 -70 6227 5819 639 260 53 40 chr6 27482007 27482234 -154933008 + MLT1J2 LTR MaLR 97 326 -124 317 242 0 0 chr6 27482715 27482777 -154932465 + L2 LINE L2 3252 3313 0 1737 140 7 42 chr6 27482913 27483221 -154932021 - AluJb SINE Alu -14 298 2 7483 88 4 2 chr6 27483450 27484417 -154930825 + LTR5 LTR ERVK 1 969 0 22 35 0 0 chr6 27484603 27484632 -154930610 + AT_rich Low_complexity Low_complexity 1 29 0 199 313 109 16 chr6 27484737 27484865 -154930377 + MIR3 SINE MIR 68 207 -1 1872 156 7 0 chr6 27485302 27485584 -154929658 - AluSx SINE Alu -28 284 1 2506 70 0 0 chr6 27486087 27486389 -154928853 + AluY SINE Alu 1 302 -9 2120 110 0 0 chr6 27486909 27487191 -154928051 + AluSg SINE Alu 28 309 -1 21 0 0 0 chr6 27487365 27487386 -154927856 + AT_rich Low_complexity Low_complexity 1 21 0 835 154 0 39 chr6 27488048 27488178 -154927064 - FLAM_C SINE Alu -4 129 5 228 362 46 65 chr6 27488896 27489219 -154926023 + L2 LINE L2 988 1304 -2010 313 367 46 0 chr6 27489223 27489332 -154925910 - L2 LINE L2 -8 3305 3192 214 307 27 47 chr6 27489340 27489490 -154925752 + L2 LINE L2 1314 1460 -1854 597 83 73 0 chr6 27489504 27489600 -154925642 - L1MA6 LINE L1 0 6300 6198 341 269 74 7 chr6 27489677 27489826 -154925416 - LTR33 LTR ERVL -8 513 355 550 268 297 4 chr6 27489869 27490145 -154925097 + LTR50 LTR ERVL 101 457 -338 382 231 225 0 chr6 27490157 27490339 -154924903 + LTR50 LTR ERVL 573 795 0 * 459 296 34 22 chr6 27490339 27490626 -154924616 - LTR33 LTR ERVL -164 357 17 270 339 154 9 chr6 27490801 27491034 -154924208 + L2 LINE L2 1698 1964 -1350 437 280 29 46 chr6 27491078 27491251 -154923991 - L1MCa LINE L1 -5318 872 572 255 61 0 0 chr6 27491289 27491322 -154923920 + (TCC)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr6 27491342 27491375 -154923867 + (TCC)n Simple_repeat Simple_repeat 2 34 0 201 74 0 0 chr6 27491395 27491422 -154923820 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1018 239 60 12 chr6 27491493 27491744 -154923498 - L1MCa LINE L1 -5483 562 300 253 346 81 0 chr6 27491822 27491958 -154923284 + L2 LINE L2 2013 2159 -1155 296 351 185 0 chr6 27492009 27492231 -154923011 + L2 LINE L2 2421 2683 -631 2207 120 0 0 chr6 27493092 27493391 -154921851 - AluSx SINE Alu -11 301 3 592 291 34 8 chr6 27493413 27493647 -154921595 + L1ME3A LINE L1 4444 4683 -1463 256 235 158 97 chr6 27493663 27493910 -154921332 + L1ME3A LINE L1 4730 4991 -1155 898 245 121 8 chr6 27493989 27494238 -154921004 + MER77 LTR ERV1 54 330 -275 421 198 59 20 chr6 27494247 27494348 -154920894 + Tigger7 DNA MER2_type 11 115 -618 * 1217 138 67 5 chr6 27494330 27494540 -154920702 + Tigger7 DNA MER2_type 2364 2586 -1 498 265 48 48 chr6 27494550 27494649 -154920593 + MER77 LTR ERV1 355 456 -149 1606 189 65 82 chr6 27494649 27495124 -154920118 - MLT1C LTR MaLR 0 467 1 498 265 48 48 chr6 27495124 27495171 -154920071 + MER77 LTR ERV1 455 501 -104 387 279 247 0 chr6 27495171 27495329 -154919913 - L1ME LINE L1 -420 5742 5546 465 188 132 95 chr6 27495354 27495504 -154919738 + MER77 LTR ERV1 465 602 -3 258 332 88 5 chr6 27495511 27495658 -154919584 + L1ME3A LINE L1 5040 5212 -934 1499 165 34 15 chr6 27495658 27495924 -154919318 + AluJb SINE Alu 1 271 -41 258 332 88 5 chr6 27495924 27495993 -154919249 + L1ME3A LINE L1 5212 5274 -872 2058 138 23 0 chr6 27496011 27496316 -154918926 + AluSx SINE Alu 1 312 0 781 228 66 115 chr6 27496354 27496762 -154918480 + MLT1B LTR MaLR 3 390 0 675 197 14 45 chr6 27496762 27496929 -154918313 + MLT1A2 LTR MaLR 231 390 0 1458 248 47 88 chr6 27496956 27497726 -154917516 + L1ME3A LINE L1 5417 6154 -16 229 308 66 0 chr6 27498231 27498322 -154916920 + MLT1J1 LTR MaLR 2 98 -348 192 255 20 20 chr6 27498594 27498645 -154916597 + MIR3 SINE MIR 154 204 -4 1826 144 14 4 chr6 27498795 27499072 -154916170 + AluSx SINE Alu 1 280 -32 222 62 0 0 chr6 27499072 27499104 -154916138 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 235 232 105 21 chr6 27499142 27499237 -154916005 + L1MB7 LINE L1 5694 5796 -2012 1829 167 3 3 chr6 27499322 27499621 -154915621 - AluJb SINE Alu -11 301 3 1293 183 71 4 chr6 27499677 27499945 -154915297 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr6 27499954 27499980 -154915262 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 27504198 27504221 -154911021 + (T)n Simple_repeat Simple_repeat 1 23 0 603 165 29 0 chr6 27504362 27504465 -154910777 + FLAM_A SINE Alu 1 106 -36 1743 152 14 7 chr6 27505278 27505567 -154909675 + AluSx SINE Alu 1 291 -21 498 216 52 15 chr6 27506915 27507049 -154908193 + L1MB7 LINE L1 6038 6176 -8 702 288 70 89 chr6 27508116 27508630 -154906612 - L2 LINE L2 0 3313 2810 589 254 0 0 chr6 27508633 27508747 -154906495 - MER81 DNA DNA 0 114 1 1038 298 111 26 chr6 27508747 27509243 -154905999 - L2 LINE L2 -513 2801 2264 1875 141 0 10 chr6 27509275 27509565 -154905677 - AluSq SINE Alu -26 287 1 476 191 114 0 chr6 27509663 27509768 -154905474 + MER90 LTR ERV1 25 141 -473 376 184 80 56 chr6 27509863 27509988 -154905254 - L1MC4a LINE L1 -1980 5828 5701 453 190 124 0 chr6 27510007 27510128 -154905114 + L2 LINE L2 2179 2314 -1000 2031 209 70 35 chr6 27511818 27512302 -154902940 + MER34 LTR ERV1 42 542 0 2131 86 28 8 chr6 27513033 27513429 -154901813 - LTR7 LTR ERV1 -2 448 1 1528 221 92 69 chr6 27513478 27513998 -154901244 - MER34 LTR ERV1 0 542 11 27 49 0 0 chr6 27514927 27514968 -154900274 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr6 27515372 27515404 -154899838 + (TA)n Simple_repeat Simple_repeat 2 34 0 865 159 38 0 chr6 27516725 27516882 -154898360 + FRAM SINE Alu 1 160 -16 1379 144 26 96 chr6 27518213 27518525 -154896717 + AluSg SINE Alu 4 293 -17 394 229 83 62 chr6 27518530 27518873 -154896369 - LTR48 LTR ERV1 -119 623 163 336 330 0 0 chr6 27518867 27518961 -154896281 - MER34 LTR ERV1 -448 94 1 * 2142 164 83 20 chr6 27519053 27519565 -154895677 + MER39B LTR ERV1 59 647 -6 2249 93 10 7 chr6 27519815 27520117 -154895125 + AluSq SINE Alu 1 303 -10 649 235 151 47 chr6 27520577 27520875 -154894367 - L2 LINE L2 -2 3311 2983 618 233 79 5 chr6 27521469 27521563 -154893679 + MER33 DNA MER1_type 9 95 -2490 2535 171 42 2 chr6 27521563 27521973 -154893269 - MSTB LTR MaLR 0 426 1 618 233 79 5 chr6 27521973 27522080 -154893162 + MER33 DNA MER1_type 95 225 -99 905 192 145 5 chr6 27522224 27522438 -154892804 - MSTC LTR MaLR -3 425 182 2050 164 154 39 chr6 27522438 27522951 -154892291 + LTR49 LTR ERV1 1 572 -23 1247 224 61 71 chr6 27522979 27523050 -154892192 + L1M4 LINE L1 2117 2187 -3959 2218 105 3 0 chr6 27523050 27523345 -154891897 + AluSq SINE Alu 1 296 -17 1247 224 61 71 chr6 27523345 27523479 -154891763 + L1M4 LINE L1 2187 2321 -3825 3421 181 45 14 chr6 27523479 27524130 -154891112 + LTR51 LTR ERV1 1 671 0 1247 224 61 71 chr6 27524130 27524400 -154890842 + L1M4 LINE L1 2321 2588 -3558 361 209 0 116 chr6 27524449 27524541 -154890701 + MIR SINE MIR 131 205 -57 2425 76 3 0 chr6 27524541 27524843 -154890399 + AluSp SINE Alu 1 303 -10 361 209 0 116 chr6 27524843 27524879 -154890363 + MIR SINE MIR 205 244 -18 313 324 125 5 chr6 27524938 27525154 -154890088 + L1ME LINE L1 5309 5550 -571 953 212 45 38 chr6 27525546 27525624 -154889618 - MER39 LTR ERV1 0 707 631 2172 105 0 3 chr6 27525624 27525920 -154889322 + AluSc SINE Alu 1 295 -14 953 212 45 38 chr6 27525920 27526129 -154889113 - MER39 LTR ERV1 -76 631 418 181 246 29 101 chr6 27526148 27526217 -154889025 + MIR3 SINE MIR 4 67 -141 216 214 0 0 chr6 27526274 27526330 -154888912 + A-rich Low_complexity Low_complexity 1 56 0 3642 118 72 0 chr6 27526331 27526848 -154888394 + MER41C LTR ERV1 1 554 0 2489 58 0 10 chr6 27527007 27527319 -154887923 - AluY SINE Alu -2 309 1 1682 155 7 0 chr6 27528700 27528984 -154886258 - AluSx SINE Alu -22 290 5 293 284 40 0 chr6 27529254 27529328 -154885914 + MER5A DNA MER1_type 30 106 -83 24 0 0 0 chr6 27530662 27530686 -154884556 + AT_rich Low_complexity Low_complexity 1 24 0 1497 223 77 6 chr6 27530736 27531217 -154884025 - MER69 DNA AcHobo -2 2524 2010 1120 296 80 53 chr6 27531215 27531400 -154883842 - MER69 DNA AcHobo -658 568 390 * 2635 43 0 0 chr6 27531400 27531700 -154883542 - AluY SINE Alu -11 300 1 1120 296 80 53 chr6 27531700 27532065 -154883177 - MER69 DNA AcHobo -836 390 3 262 424 5 0 chr6 27532423 27532619 -154882623 - MIR SINE MIR -6 256 60 3870 138 33 71 chr6 27532838 27533556 -154881686 + LTR8 LTR ERV1 1 691 0 1174 188 106 3 chr6 27533696 27533988 -154881254 + MER33 DNA MER1_type 1 322 -2 2268 106 0 10 chr6 27534321 27534633 -154880609 + AluSg SINE Alu 1 309 -1 23 54 0 0 chr6 27534767 27534804 -154880438 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr6 27534805 27534831 -154880411 + (CA)n Simple_repeat Simple_repeat 1 26 0 403 246 49 63 chr6 27534861 27535003 -154880239 + MIR SINE MIR 117 256 -6 2082 116 3 7 chr6 27535244 27535559 -154879683 + AluSx SINE Alu 2 312 0 281 216 39 10 chr6 27535674 27535776 -154879466 + Tigger8 DNA MER2_type 186 290 -376 866 256 46 100 chr6 27535809 27536328 -154878914 + MER34 LTR ERV1 1 491 -51 532 270 63 5 chr6 27536379 27536601 -154878641 + Tigger8 DNA MER2_type 321 555 -111 1791 144 20 13 chr6 27536871 27537176 -154878066 - AluSx SINE Alu -5 307 1 2130 95 21 0 chr6 27537176 27537459 -154877783 - AluSg1 SINE Alu -19 290 1 1540 106 81 93 chr6 27537687 27537870 -154877372 - Tigger7 DNA MER2_type -38 2549 2370 2184 93 0 0 chr6 27537870 27538160 -154877082 + AluSx SINE Alu 10 299 -13 1540 106 81 93 chr6 27538160 27538297 -154876945 - Tigger7 DNA MER2_type -217 2370 2233 21 0 0 0 chr6 27541572 27541593 -154873649 + AT_rich Low_complexity Low_complexity 1 21 0 1721 134 80 0 chr6 27542469 27542745 -154872497 + AluSx SINE Alu 1 298 -14 1947 97 0 12 chr6 27542771 27543028 -154872214 + AluSq SINE Alu 1 254 -59 516 130 0 0 chr6 27543057 27543134 -154872108 + AluS SINE Alu 226 302 -8 354 306 25 0 chr6 27543506 27543627 -154871615 + LTR37B LTR ERV1 1 124 -344 1283 205 37 10 chr6 27543638 27543936 -154871306 - MER33 DNA MER1_type -16 308 3 512 256 30 67 chr6 27544072 27544341 -154870901 + LTR37B LTR ERV1 210 468 0 2325 102 0 0 chr6 27544551 27544844 -154870398 + AluSg SINE Alu 1 293 -17 847 173 0 8 chr6 27545232 27545365 -154869877 - FLAM_C SINE Alu -1 132 1 867 182 6 30 chr6 27545861 27546026 -154869216 + FRAM SINE Alu 1 157 -19 32 0 0 0 chr6 27546029 27546061 -154869181 + AT_rich Low_complexity Low_complexity 1 32 0 369 312 34 73 chr6 27546167 27546401 -154868841 + MARNA DNA Mariner 277 501 -85 346 223 101 40 chr6 27546749 27546897 -154868345 - Charlie1 DNA MER1_type -1 2760 2604 219 214 31 31 chr6 27546927 27547025 -154868217 + (TA)n Simple_repeat Simple_repeat 2 99 0 304 329 180 0 chr6 27547144 27547351 -154867891 + MIR SINE MIR 1 243 -19 787 249 33 57 chr6 27548129 27548374 -154866868 + MIR SINE MIR 2 240 -22 21 36 0 0 chr6 27548374 27548402 -154866840 + AT_rich Low_complexity Low_complexity 1 28 0 1395 161 9 0 chr6 27548985 27549208 -154866034 - AluSx SINE Alu -87 225 1 204 350 58 0 chr6 27549409 27549512 -154865730 - L2 LINE L2 0 3313 3205 280 79 0 0 chr6 27549690 27549728 -154865514 + U2 snRNA snRNA 1 38 -150 2340 80 3 0 chr6 27550717 27551018 -154864224 + AluY SINE Alu 1 302 -9 3485 129 83 45 chr6 27551169 27551263 -154863979 - MER39B LTR ERV1 0 653 564 372 22 0 0 chr6 27551263 27551308 -154863934 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2075 82 34 0 chr6 27551308 27551576 -154863666 - AluSc SINE Alu -32 277 1 3485 129 83 45 chr6 27551576 27552109 -154863133 - MER39B LTR ERV1 -88 565 1 792 184 0 0 chr6 27552185 27552310 -154862932 - FRAM SINE Alu -8 168 44 232 191 128 0 chr6 27552310 27552357 -154862885 + MER20 DNA MER1_type 75 127 -92 2134 172 71 19 chr6 27552389 27552813 -154862429 + MER61-int LTR ERV1 2357 2802 -2415 619 195 76 0 chr6 27552850 27552968 -154862274 + MER52C LTR ERV1 1152 1278 0 908 186 82 0 chr6 27553696 27553879 -154861363 - MER3 DNA MER1_type 0 209 12 795 227 16 27 chr6 27554040 27554225 -154861017 - MLT1A2 LTR MaLR -4 370 188 1304 196 68 7 chr6 27554289 27554569 -154860673 - AluJo SINE Alu -15 297 1 2112 120 31 0 chr6 27554577 27554868 -154860374 - AluSx SINE Alu -12 300 1 806 183 18 24 chr6 27554872 27555036 -154860206 - MLT1A2 LTR MaLR -211 163 1 1551 194 97 16 chr6 27555041 27555423 -154859819 - MLT1C LTR MaLR 0 467 55 3175 166 71 24 chr6 27555478 27556184 -154859058 + LTR1 LTR ERV1 18 785 0 283 83 50 100 chr6 27556184 27556244 -154858998 - MLT1C LTR MaLR -407 60 4 1670 165 3 16 chr6 27556837 27557140 -154858102 - AluJb SINE Alu -13 299 1 1951 144 0 3 chr6 27557248 27557547 -154857695 - AluSx SINE Alu -14 298 1 252 0 0 0 chr6 27557789 27557817 -154857425 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 215 11 33 chr6 27558001 27558101 -154857141 - L1P3 LINE L1 -576 5545 5456 387 0 0 0 chr6 27558184 27558227 -154857015 + (TA)n Simple_repeat Simple_repeat 2 44 0 2107 101 28 3 chr6 27558228 27558515 -154856727 - AluSg SINE Alu -16 294 1 1476 194 88 29 chr6 27559278 27559629 -154855613 + LTR2B LTR ERV1 32 403 -87 1704 60 0 0 chr6 27559629 27559846 -154855396 + Harlequin LTR ERV1 27 243 -6653 * 43036 68 13 12 chr6 27559841 27565531 -154849711 + Harlequin LTR ERV1 1198 6896 0 1861 187 49 49 chr6 27565531 27565980 -154849262 + LTR2 LTR ERV1 1 449 0 1953 127 27 23 chr6 27566328 27566628 -154848614 - AluSx SINE Alu -11 301 1 1358 224 152 8 chr6 27566778 27567179 -154848063 - MLT1C LTR MaLR -6 461 3 1613 175 17 21 chr6 27567348 27567639 -154847603 - AluJo SINE Alu -22 290 1 203 297 14 0 chr6 27568042 27568116 -154847126 + L2 LINE L2 1914 1988 -1326 1073 216 24 72 chr6 27568296 27568471 -154846771 + L1MB7 LINE L1 4622 4775 -1371 2097 108 21 0 chr6 27568471 27568758 -154846484 + AluSx SINE Alu 3 295 -17 1073 216 24 72 chr6 27568758 27568916 -154846326 + L1MB7 LINE L1 4775 4939 -1207 2330 160 108 61 chr6 27568951 27569545 -154845697 + L1MB7 LINE L1 5501 6122 -62 1420 90 0 16 chr6 27569545 27569719 -154845523 - AluSp SINE Alu -6 307 135 2179 115 0 0 chr6 27569719 27570014 -154845228 - AluSq SINE Alu -18 295 1 1420 90 0 16 chr6 27570014 27570028 -154845214 - AluSp SINE Alu -178 135 122 218 278 125 0 chr6 27570314 27570386 -154844856 + MER5B DNA MER1_type 1 81 -97 309 146 109 73 chr6 27570481 27570591 -154844651 - MER51D LTR ERV1 -44 613 500 317 253 42 11 chr6 27571066 27571161 -154844081 + MER5B DNA MER1_type 80 177 -1 219 268 0 14 chr6 27572772 27572843 -154842399 - MIR SINE MIR -80 182 113 338 302 105 20 chr6 27572984 27573262 -154841980 - L2 LINE L2 0 3313 2954 701 182 74 14 chr6 27573357 27573505 -154841737 - MER20 DNA MER1_type -56 163 7 1140 269 42 62 chr6 27573628 27573878 -154841364 - L2 LINE L2 -580 2734 2497 1576 160 56 7 chr6 27573878 27574147 -154841095 + AluJo SINE Alu 1 282 -30 1140 269 42 62 chr6 27574147 27574376 -154840866 - L2 LINE L2 -817 2497 2265 2265 123 3 0 chr6 27574381 27574691 -154840551 + AluSx SINE Alu 1 311 -1 2180 112 10 0 chr6 27576116 27576421 -154838821 + AluSg SINE Alu 1 308 -2 238 232 0 58 chr6 27576583 27576652 -154838590 + MER116 DNA Mariner 2 66 -14 218 291 86 43 chr6 27577628 27577745 -154837497 - L2 LINE L2 -8 3264 3143 256 264 236 28 chr6 27578143 27578287 -154836955 - L2 LINE L2 -557 2757 2584 396 324 6 62 chr6 27578999 27579178 -154836064 + MER91B DNA MER1_type 12 180 -10 561 294 24 57 chr6 27579299 27579427 -154835815 - MIR SINE MIR -21 241 121 2540 75 0 0 chr6 27579427 27579735 -154835507 + AluY SINE Alu 1 308 -3 561 294 24 57 chr6 27579735 27579817 -154835425 - MIR SINE MIR -141 121 38 2301 70 35 7 chr6 27580367 27580653 -154834589 - AluSg SINE Alu -16 294 1 433 188 59 0 chr6 27582583 27582668 -154832574 + L1PB4 LINE L1 6055 6144 -12 332 207 122 98 chr6 27582688 27582852 -154832390 - MIR SINE MIR -5 257 90 2314 103 0 10 chr6 27583104 27583405 -154831837 - AluSx SINE Alu -14 298 1 1473 154 68 11 chr6 27583419 27583698 -154831544 - AluJo SINE Alu -17 295 1 24 0 0 0 chr6 27583823 27583847 -154831395 + AT_rich Low_complexity Low_complexity 1 24 0 2293 94 3 0 chr6 27584032 27584330 -154830912 - AluSg SINE Alu -11 299 1 1508 173 0 23 chr6 27584623 27584760 -154830482 + AluJb SINE Alu 1 131 -181 2465 68 13 0 chr6 27584760 27585067 -154830175 + AluSp SINE Alu 1 311 -2 1508 173 0 23 chr6 27585067 27585195 -154830047 + AluJb SINE Alu 131 260 -52 25 51 0 0 chr6 27585195 27585234 -154830008 + AT_rich Low_complexity Low_complexity 1 39 0 417 39 0 0 chr6 27585886 27585937 -154829305 + (CA)n Simple_repeat Simple_repeat 1 51 0 824 148 0 25 chr6 27586028 27586150 -154829092 - FLAM_C SINE Alu -16 127 9 21 0 0 0 chr6 27587760 27587781 -154827461 + AT_rich Low_complexity Low_complexity 1 21 0 1554 109 134 18 chr6 27588744 27589020 -154826222 + AluSg SINE Alu 2 309 -1 2046 95 7 0 chr6 27589216 27589489 -154825753 + AluSg1 SINE Alu 3 277 -32 180 0 0 0 chr6 27589489 27589509 -154825733 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 249 280 37 28 chr6 27590538 27590590 -154824652 - Charlie4 DNA MER1_type -1837 124 74 207 0 0 0 chr6 27590590 27590613 -154824629 + (CAA)n Simple_repeat Simple_repeat 2 24 0 249 280 37 28 chr6 27590613 27590667 -154824575 - Charlie4 DNA MER1_type -1887 74 17 824 176 152 80 chr6 27590947 27591119 -154824123 - AluJo SINE Alu -1 311 114 1656 154 37 74 chr6 27591119 27591469 -154823773 - MER1B DNA MER1_type 0 337 1 824 176 152 80 chr6 27591469 27591546 -154823696 - AluJo SINE Alu -198 114 44 26 0 0 0 chr6 27592770 27592796 -154822446 + AT_rich Low_complexity Low_complexity 1 26 0 861 178 235 9 chr6 27593247 27593460 -154821782 + AluJo SINE Alu 1 261 -51 2156 110 3 3 chr6 27593755 27594056 -154821186 - AluSq SINE Alu -11 302 2 1732 153 28 7 chr6 27594399 27594687 -154820555 + AluJo SINE Alu 1 294 -18 278 306 75 20 chr6 27594699 27594846 -154820396 + MER112 DNA MER1_type 99 253 -7 320 219 233 41 chr6 27595143 27595289 -154819953 - MIR SINE MIR 0 262 89 838 173 0 0 chr6 27595315 27595448 -154819794 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr6 27595565 27595595 -154819647 + AT_rich Low_complexity Low_complexity 1 30 0 264 275 107 60 chr6 27596881 27597179 -154818063 + MLT1J LTR MaLR 200 511 0 237 336 98 25 chr6 27597203 27597325 -154817917 + L2 LINE L2 3183 3313 0 243 187 152 123 chr6 27597422 27597593 -154817649 - L1ME LINE L1 -566 5555 5380 262 250 47 70 chr6 27597718 27597846 -154817396 + MIR3 SINE MIR 15 139 -69 919 231 76 43 chr6 27597862 27598304 -154816938 - MLT1B LTR MaLR 0 390 4 731 217 115 33 chr6 27598681 27598985 -154816257 + L1ME4a LINE L1 5513 5841 -280 222 156 16 47 chr6 27599018 27599082 -154816160 + (TA)n Simple_repeat Simple_repeat 1 62 0 789 278 24 40 chr6 27599442 27599690 -154815552 - MIR SINE MIR -1 261 18 29 28 0 0 chr6 27599993 27600029 -154815213 + AT_rich Low_complexity Low_complexity 1 36 0 226 313 12 0 chr6 27600187 27600270 -154814972 + A-rich Low_complexity Low_complexity 3 86 0 1708 155 3 52 chr6 27600630 27600939 -154814303 + AluJb SINE Alu 1 294 -18 609 287 25 30 chr6 27601534 27601736 -154813506 - MIR SINE MIR -51 211 11 224 270 68 0 chr6 27601786 27601860 -154813382 - MIR SINE MIR -51 211 133 22 35 0 0 chr6 27604090 27604119 -154811123 + AT_rich Low_complexity Low_complexity 1 29 0 2032 100 50 0 chr6 27604402 27604682 -154810560 + AluSx SINE Alu 3 296 -16 2412 68 7 3 chr6 27605991 27606301 -154808941 + AluSp SINE Alu 1 311 -2 490 253 108 82 chr6 27607148 27607563 -154807679 - MER101 LTR ERV1 -36 438 13 1609 130 14 42 chr6 27609544 27609829 -154805413 + AluSx SINE Alu 15 291 -21 1959 93 87 14 chr6 27609969 27610258 -154804984 - AluSq SINE Alu -3 310 1 433 234 48 35 chr6 27611037 27611182 -154804060 - MIR SINE MIR -14 248 102 2050 110 0 38 chr6 27611940 27612232 -154803010 + AluSx SINE Alu 11 291 -21 919 112 0 8 chr6 27612234 27612359 -154802883 + AluSc SINE Alu 104 227 -82 24 0 0 0 chr6 27613172 27613196 -154802046 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 27613238 27613265 -154801977 + AT_rich Low_complexity Low_complexity 1 27 0 1832 145 15 0 chr6 27613532 27613801 -154801441 - AluSx SINE Alu -39 273 1 1264 169 65 125 chr6 27614119 27614534 -154800708 - MLT1B LTR MaLR 0 390 1 1986 188 38 40 chr6 27614534 27614597 -154800645 - MLT1B-int LTR MaLR 0 1735 1673 2338 84 0 3 chr6 27614597 27614895 -154800347 + AluY SINE Alu 1 297 -14 1986 188 38 40 chr6 27614895 27615252 -154799990 - MLT1B-int LTR MaLR -62 1673 1316 1465 138 16 103 chr6 27615476 27615788 -154799454 + AluY SINE Alu 11 295 -16 2074 191 30 109 chr6 27615917 27616068 -154799174 - MLT1B-int LTR MaLR -486 885 724 1790 171 3 10 chr6 27616068 27616377 -154798865 + AluJb SINE Alu 1 307 -5 2074 191 30 109 chr6 27616377 27616807 -154798435 - MLT1B-int LTR MaLR -647 724 304 1999 124 4 0 chr6 27616807 27617081 -154798161 - AluSg SINE Alu -35 275 1 2074 191 30 109 chr6 27617081 27617359 -154797883 - MLT1B-int LTR MaLR -1067 304 5 778 185 14 7 chr6 27617362 27617508 -154797734 - MLT1B LTR MaLR -4 386 240 556 304 88 44 chr6 27617676 27618219 -154797023 + L2 LINE L2 2142 2708 -606 333 0 0 0 chr6 27618412 27618449 -154796793 + (TG)n Simple_repeat Simple_repeat 2 38 0 2176 112 0 16 chr6 27618814 27619119 -154796123 - AluSc SINE Alu -9 300 1 1036 101 0 22 chr6 27619119 27619258 -154795984 - AluSq/x SINE Alu -177 136 1 2083 127 17 0 chr6 27619492 27619783 -154795459 + AluSx SINE Alu 4 299 -13 590 114 0 0 chr6 27620017 27620096 -154795146 + MADE1 DNA Mariner 2 80 0 343 285 39 8 chr6 27620274 27620404 -154794838 + L2 LINE L2 3156 3289 -24 615 92 0 0 chr6 27620877 27620964 -154794278 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1971 125 4 4 chr6 27620964 27621243 -154793999 - AluSx SINE Alu -33 279 1 745 163 198 6 chr6 27621589 27621761 -154793481 - MER3 DNA MER1_type -4 205 1 495 214 125 18 chr6 27621843 27621952 -154793290 - MER53 DNA DNA -3 186 51 510 17 0 0 chr6 27621952 27622011 -154793231 + (TA)n Simple_repeat Simple_repeat 2 60 0 495 214 125 18 chr6 27622011 27622069 -154793173 - MER53 DNA DNA -138 51 1 775 241 97 4 chr6 27622661 27622918 -154792324 - L1MC4a LINE L1 -1840 5968 5688 257 294 128 0 chr6 27623011 27623113 -154792129 + MIR SINE MIR 73 187 -75 25 31 0 0 chr6 27623153 27623185 -154792057 + AT_rich Low_complexity Low_complexity 1 32 0 259 235 0 102 chr6 27623530 27623628 -154791614 + L2 LINE L2 3224 3311 -2 1548 191 10 7 chr6 27623755 27624048 -154791194 + AluJb SINE Alu 3 296 -16 198 0 0 0 chr6 27624092 27624114 -154791128 + (CA)n Simple_repeat Simple_repeat 2 23 0 329 277 107 23 chr6 27624140 27624317 -154790925 + MIR SINE MIR 20 211 -51 564 259 61 14 chr6 27625064 27625211 -154790031 - MER63 DNA MER1_type -281 781 2 895 231 103 30 chr6 27626651 27626978 -154788264 - MLT1F1 LTR MaLR -204 363 1 793 246 131 46 chr6 27627165 27627599 -154787643 + LTR33A LTR ERVL 19 489 -34 271 245 71 10 chr6 27627763 27627861 -154787381 + MIR3 SINE MIR 104 207 -1 1021 231 0 5 chr6 27628173 27628372 -154786870 + AluJb SINE Alu 85 282 -30 340 229 174 0 chr6 27628499 27628643 -154786599 + MIR SINE MIR 78 246 -16 2083 131 0 14 chr6 27628712 27629009 -154786233 - AluSx SINE Alu -19 293 1 1559 157 182 40 chr6 27629050 27629446 -154785796 - LTR47A LTR ERVL 0 452 1 180 0 0 0 chr6 27629485 27629505 -154785737 + (A)n Simple_repeat Simple_repeat 1 20 0 2484 55 0 0 chr6 27629734 27630026 -154785216 - AluY SINE Alu -19 292 1 2599 33 0 20 chr6 27630036 27630391 -154784851 - AluY SINE Alu 0 311 1 277 222 62 12 chr6 27630510 27630591 -154784651 - MIR SINE MIR -25 237 153 415 274 19 7 chr6 27630621 27630843 -154784399 - MLT1I LTR MaLR -36 373 105 234 313 70 17 chr6 27630982 27631097 -154784145 - MIR SINE MIR -108 154 34 1825 225 71 52 chr6 27631103 27631622 -154783620 + MLT1F LTR MaLR 3 531 -11 186 209 0 0 chr6 27632090 27632133 -154783109 + G-rich Low_complexity Low_complexity 4 46 0 261 374 11 0 chr6 27632133 27632224 -154783018 - MLT1G LTR MaLR -288 302 211 285 254 103 75 chr6 27632278 27632491 -154782751 + L1ME3A LINE L1 5744 5962 -208 2058 131 23 7 chr6 27632667 27632972 -154782270 - AluSx SINE Alu -2 310 1 2665 40 0 0 chr6 27633145 27633448 -154781794 - AluY SINE Alu -5 306 4 1880 241 79 31 chr6 27633498 27634147 -154781095 - L1MC4a LINE L1 -21 7787 7096 2555 50 0 0 chr6 27634147 27634446 -154780796 + AluY SINE Alu 1 299 -12 1880 241 79 31 chr6 27634446 27634546 -154780696 - L1MC4a LINE L1 -712 7096 7002 1054 168 6 11 chr6 27634568 27634747 -154780495 - AluJo SINE Alu -15 297 120 2016 215 31 103 chr6 27634773 27635013 -154780229 - L1MC4a LINE L1 -206 5915 6379 2284 118 0 0 chr6 27635013 27635317 -154779925 - AluSx SINE Alu -8 304 1 2016 215 31 103 chr6 27635317 27636000 -154779242 - L1MC4a LINE L1 259 6380 5650 314 256 23 30 chr6 27636510 27636643 -154778599 + MER112 DNA MER1_type 123 254 -6 206 381 68 6 chr6 27636648 27636824 -154778418 + MIR SINE MIR 19 205 -57 2179 109 0 13 chr6 27637401 27637703 -154777539 + AluSq SINE Alu 11 308 -5 1235 154 145 0 chr6 27637861 27637972 -154777270 - AluSx SINE Alu -44 268 174 338 0 24 0 chr6 27637972 27638014 -154777228 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1235 154 145 0 chr6 27638014 27638136 -154777106 - AluSx SINE Alu -138 174 1 639 133 0 19 chr6 27638152 27638257 -154776985 + AluSg/x SINE Alu 208 310 0 2477 63 0 0 chr6 27638906 27639205 -154776037 - AluY SINE Alu -10 301 3 242 174 89 15 chr6 27641462 27641530 -154773712 - AluS SINE Alu -15 287 228 261 0 0 0 chr6 27643463 27643492 -154771750 + (T)n Simple_repeat Simple_repeat 1 29 0 378 274 17 69 chr6 27644407 27644582 -154770660 + L1MEd LINE L1 623 788 -5417 556 151 0 0 chr6 27644639 27644725 -154770517 + AluJ/FLAM SINE Alu 1 86 -226 198 0 0 0 chr6 27644734 27644756 -154770486 + (A)n Simple_repeat Simple_repeat 1 22 0 2261 98 3 10 chr6 27644806 27645103 -154770139 + AluSg SINE Alu 1 295 -15 2273 118 0 0 chr6 27645145 27645451 -154769791 + AluSq SINE Alu 1 306 -7 282 232 42 77 chr6 27645508 27645676 -154769566 + L1MEd LINE L1 1011 1172 -5224 1860 175 0 7 chr6 27645708 27646016 -154769226 + AluJb SINE Alu 1 306 -6 27 29 0 0 chr6 27646151 27646185 -154769057 + AT_rich Low_complexity Low_complexity 1 34 0 1642 184 20 7 chr6 27646754 27647058 -154768184 - AluSx SINE Alu -4 308 1 303 269 82 20 chr6 27647059 27647304 -154767938 - L1M4 LINE L1 -2158 3988 3729 1114 138 0 0 chr6 27647337 27647497 -154767745 - AluSg/x SINE Alu -16 296 137 1421 246 138 10 chr6 27647593 27647991 -154767251 - MLT1F1 LTR MaLR -2 565 117 849 196 19 0 chr6 27648001 27648159 -154767083 - FRAM SINE Alu -15 161 1 279 264 36 18 chr6 27648165 27648275 -154766967 - MLT1F1 LTR MaLR -450 117 6 35 0 0 0 chr6 27648812 27648847 -154766395 + AT_rich Low_complexity Low_complexity 1 35 0 2327 110 0 3 chr6 27650912 27651220 -154764022 - AluSx SINE Alu -5 307 1 333 174 0 0 chr6 27651222 27651291 -154763951 + T-rich Low_complexity Low_complexity 1 69 0 189 0 0 0 chr6 27652093 27652114 -154763128 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 597 60 0 12 chr6 27652117 27652200 -154763042 - L1PA4 LINE L1 -3 6152 6071 2242 107 3 22 chr6 27652396 27652715 -154762527 + AluSp SINE Alu 1 313 0 21 36 0 0 chr6 27653190 27653218 -154762024 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 27653308 27653329 -154761913 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr6 27653724 27653794 -154761448 + AT_rich Low_complexity Low_complexity 1 70 0 541 118 50 2 chr6 27653910 27654149 -154761093 + AluSg SINE Alu 1 309 -1 593 258 123 27 chr6 27654348 27654608 -154760634 + L2 LINE L2 3023 3307 -6 416 264 74 31 chr6 27654692 27654855 -154760387 + MIR SINE MIR 92 261 -1 226 135 54 0 chr6 27655783 27655820 -154759422 + LTR64 LTR ERVK 407 445 -113 429 193 34 0 chr6 27655822 27655910 -154759332 - MER5A DNA MER1_type -91 98 8 2244 68 3 10 chr6 27656423 27656717 -154758525 + AluSc SINE Alu 1 292 -17 712 161 54 27 chr6 27657087 27657236 -154758006 - ORSL DNA AcHobo 0 275 123 2478 40 24 10 chr6 27657244 27657540 -154757702 - AluY SINE Alu -11 300 1 489 319 147 19 chr6 27657561 27657911 -154757331 - L1MEd LINE L1 -1870 4259 3843 1635 183 17 10 chr6 27657911 27658270 -154756972 - AluSx SINE Alu 0 312 1 489 319 147 19 chr6 27658270 27658349 -154756893 - L1MEd LINE L1 -2286 3843 3775 923 196 12 0 chr6 27658612 27658785 -154756457 + FAM SINE Alu 1 175 0 331 312 38 13 chr6 27659234 27659391 -154755851 - L1MEd LINE L1 -3592 2537 2377 280 245 68 14 chr6 27659401 27659548 -154755694 - L1MEd LINE L1 -5187 932 778 285 290 0 0 chr6 27659660 27659729 -154755513 + L2 LINE L2 3204 3272 0 2220 107 0 46 chr6 27660229 27660556 -154754686 - AluSx SINE Alu 0 312 1 257 267 56 0 chr6 27660689 27660779 -154754463 - L1M4 LINE L1 -3748 2398 2304 252 0 0 0 chr6 27660810 27660838 -154754404 + (TTA)n Simple_repeat Simple_repeat 3 30 0 554 201 22 30 chr6 27661542 27661676 -154753566 + MER92B LTR ERV1 7 139 -497 1071 123 0 0 chr6 27661676 27661822 -154753420 + AluSc SINE Alu 1 146 -163 648 94 0 3 chr6 27661822 27661979 -154753263 - AluSc SINE Alu -108 201 2 650 203 46 33 chr6 27661980 27662040 -154753202 - MER34 LTR ERV1 -377 165 107 4169 39 17 0 chr6 27662040 27662522 -154752720 + LTR2B LTR ERV1 1 490 0 650 203 46 33 chr6 27662522 27662614 -154752628 - MER34 LTR ERV1 -435 107 11 409 244 17 26 chr6 27662622 27662737 -154752505 - L2 LINE L2 -14 3299 3186 1600 155 4 0 chr6 27663034 27663273 -154751969 + AluSx SINE Alu 9 248 -64 237 167 0 0 chr6 27663293 27663347 -154751895 + GA-rich Low_complexity Low_complexity 2 55 0 429 303 76 24 chr6 27663609 27663899 -154751343 + L1ME3A LINE L1 5643 5947 -223 353 219 208 43 chr6 27663986 27664104 -154751138 + FLAM_A SINE Alu 1 126 -176 1937 157 0 7 chr6 27664104 27664403 -154750839 - AluSx SINE Alu -15 297 1 2098 137 3 7 chr6 27664478 27664784 -154750458 - AluSx SINE Alu -7 305 1 204 351 58 35 chr6 27665791 27665920 -154749322 + MIR SINE MIR 37 162 -100 1965 118 40 20 chr6 27665920 27666224 -154749018 - AluSg SINE Alu 0 310 1 2404 81 7 0 chr6 27666224 27666531 -154748711 - AluY SINE Alu -2 309 1 2218 100 7 3 chr6 27666532 27666831 -154748411 - AluSq SINE Alu -13 300 1 204 351 58 35 chr6 27666831 27666872 -154748370 + MIR SINE MIR 161 214 -48 25 0 0 0 chr6 27667284 27667309 -154747933 + AT_rich Low_complexity Low_complexity 1 25 0 417 108 31 0 chr6 27669379 27669444 -154745798 - MER5A DNA MER1_type -1 188 122 346 205 145 43 chr6 27669758 27669875 -154745367 - L2 LINE L2 -1 3312 3184 2023 151 0 25 chr6 27669887 27670206 -154745036 + AluSx SINE Alu 1 311 -1 2231 118 3 0 chr6 27670488 27670793 -154744449 - AluSp SINE Alu -6 307 2 244 132 0 0 chr6 27670884 27670922 -154744320 - AluSx SINE Alu -7 293 256 1179 139 6 0 chr6 27670925 27671098 -154744144 - AluSx SINE Alu -138 174 1 274 312 80 37 chr6 27671327 27671651 -154743591 - MLT1J LTR MaLR -74 376 64 1456 160 11 18 chr6 27672507 27672782 -154742460 + AluJb SINE Alu 1 273 -39 2436 74 7 7 chr6 27673665 27673974 -154741268 - AluSg SINE Alu -1 309 1 21 0 0 0 chr6 27674641 27674662 -154740580 + AT_rich Low_complexity Low_complexity 1 21 0 502 250 109 77 chr6 27674811 27675042 -154740200 + Charlie4a DNA MER1_type 5 250 -1711 2389 87 0 3 chr6 27675042 27675352 -154739890 + AluY SINE Alu 1 309 -2 502 250 109 77 chr6 27675352 27675432 -154739810 + Charlie4a DNA MER1_type 250 326 -182 1434 164 87 22 chr6 27675441 27675716 -154739526 + AluSx SINE Alu 13 305 -7 477 203 16 0 chr6 27675719 27675842 -154739400 + Charlie4a DNA MER1_type 315 439 -69 1948 142 7 0 chr6 27675843 27676145 -154739097 + AluSx SINE Alu 2 305 0 1973 129 11 0 chr6 27676152 27676457 -154738785 + AluSx SINE Alu 1 308 0 2067 124 0 23 chr6 27676913 27677220 -154738022 + AluSg SINE Alu 1 300 -10 246 328 47 16 chr6 27677368 27677496 -154737746 - MIR3 SINE MIR -76 132 1 23 33 0 0 chr6 27678291 27678321 -154736921 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr6 27678429 27678459 -154736783 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr6 27678948 27678976 -154736266 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 23 102 chr6 27680012 27680120 -154735122 + FRAM SINE Alu 1 91 -211 2040 128 7 0 chr6 27680120 27680416 -154734826 - AluSx SINE Alu -14 298 1 368 261 23 102 chr6 27680416 27680483 -154734759 + FRAM SINE Alu 91 162 -4 180 0 0 0 chr6 27682101 27682121 -154733121 + (A)n Simple_repeat Simple_repeat 1 20 0 1979 122 7 16 chr6 27682548 27682851 -154732391 - AluSg SINE Alu -10 300 1 31 68 0 0 chr6 27685029 27685088 -154730154 + AT_rich Low_complexity Low_complexity 1 59 0 2288 104 0 0 chr6 27685144 27685442 -154729800 - AluSp SINE Alu -15 298 1 715 280 48 72 chr6 27685797 27686312 -154728930 + MLT1D LTR MaLR 3 505 0 32 67 0 0 chr6 27686960 27687020 -154728222 + AT_rich Low_complexity Low_complexity 1 60 0 2891 161 67 13 chr6 27687171 27687711 -154727531 - MER39B LTR ERV1 -84 569 1 25 31 0 0 chr6 27687889 27687921 -154727321 + AT_rich Low_complexity Low_complexity 1 32 0 2229 104 10 0 chr6 27687997 27688294 -154726948 - AluSp SINE Alu -12 301 2 833 199 120 61 chr6 27689770 27690096 -154725146 + LOR1b LTR ERV1 3 347 -114 267 225 169 0 chr6 27690095 27690166 -154725076 + LTR51 LTR ERV1 468 550 -121 * 1861 153 13 7 chr6 27690690 27690991 -154724251 + AluSx SINE Alu 1 303 -9 502 345 38 13 chr6 27691223 27691539 -154723703 - L2 LINE L2 -26 3287 2964 515 253 38 21 chr6 27691773 27691959 -154723283 + LTR43 LTR ERV1 133 321 -281 242 221 70 89 chr6 27691988 27692146 -154723096 + LTR58 LTR ERV1 513 667 -12 1486 264 37 73 chr6 27692180 27692318 -154722924 - L2 LINE L2 -467 2847 2706 222 37 0 0 chr6 27692318 27692345 -154722897 + (CA)n Simple_repeat Simple_repeat 2 28 0 1486 264 37 73 chr6 27692345 27692357 -154722885 - L2 LINE L2 -608 2706 2695 2285 103 0 0 chr6 27692357 27692657 -154722585 - AluY SINE Alu -11 300 1 1486 264 37 73 chr6 27692657 27693232 -154722010 - L2 LINE L2 -619 2695 2147 805 291 151 29 chr6 27693937 27694208 -154721034 + L2 LINE L2 2452 2689 -624 2286 76 0 3 chr6 27694208 27694509 -154720733 + AluY SINE Alu 1 300 -11 805 291 151 29 chr6 27694509 27694810 -154720432 + L2 LINE L2 2689 3086 -227 973 115 0 0 chr6 27694927 27695057 -154720185 + AluSq/x SINE Alu 1 130 -183 1553 123 5 0 chr6 27695061 27695273 -154719969 + AluSx SINE Alu 1 213 -99 2180 118 3 16 chr6 27695664 27695978 -154719264 + AluSx SINE Alu 1 310 -2 215 289 72 0 chr6 27696644 27696727 -154718515 + L2 LINE L2 3225 3313 0 2907 13 0 0 chr6 27696789 27697099 -154718143 - AluY SINE Alu -1 310 1 324 0 0 0 chr6 27697262 27697298 -154717944 + (TG)n Simple_repeat Simple_repeat 1 36 0 299 280 105 0 chr6 27697350 27697493 -154717749 - L1ME4a LINE L1 -254 5867 5710 1398 168 137 19 chr6 27697763 27698085 -154717157 + MLT1B LTR MaLR 24 383 -7 682 211 84 80 chr6 27698210 27698309 -154716933 - MER39 LTR ERV1 0 707 610 2317 72 0 34 chr6 27698309 27698630 -154716612 - AluY SINE Alu -1 310 1 682 211 84 80 chr6 27698630 27698829 -154716413 - MER39 LTR ERV1 -97 610 408 275 305 63 0 chr6 27698872 27698967 -154716275 - MER34 LTR ERV1 -428 114 14 2011 115 3 7 chr6 27699076 27699363 -154715879 - AluSq SINE Alu -27 286 1 2283 92 0 16 chr6 27699380 27699694 -154715548 - AluSg SINE Alu 0 310 2 868 242 29 12 chr6 27699842 27700082 -154715160 - AluJo SINE Alu -47 265 22 1418 157 68 4 chr6 27700119 27700368 -154714874 - AluSg SINE Alu -22 288 24 2216 116 0 7 chr6 27702064 27702367 -154712875 + AluSg SINE Alu 1 301 -9 1023 217 86 45 chr6 27702472 27702618 -154712624 + AluJo SINE Alu 1 139 -163 2264 100 0 16 chr6 27702618 27702927 -154712315 + AluSx SINE Alu 7 310 -2 1023 217 86 45 chr6 27702927 27703070 -154712172 + AluJo SINE Alu 139 302 0 2321 125 8 19 chr6 27703909 27704270 -154710972 + MER39B LTR ERV1 3 359 -294 1629 238 53 37 chr6 27704270 27704976 -154710266 + MER49 LTR ERV1 1 923 0 1620 152 24 1 chr6 27704976 27705255 -154709987 + MER39B LTR ERV1 356 622 0 781 227 35 0 chr6 27705523 27705695 -154709547 - FRAM SINE Alu -1 175 1 2091 135 0 13 chr6 27706039 27706351 -154708891 + AluSx SINE Alu 1 308 -4 990 198 90 12 chr6 27706351 27706694 -154708548 - Charlie5 DNA MER1_type -9 2603 2234 349 231 50 33 chr6 27706697 27706734 -154708508 - MER3 DNA MER1_type 6 168 133 1935 130 0 63 chr6 27706734 27707050 -154708192 + AluSx SINE Alu 1 296 -16 349 231 50 33 chr6 27707050 27707133 -154708109 - MER3 DNA MER1_type -29 133 46 1252 47 0 0 chr6 27710560 27710775 -154704467 - AluSp SINE Alu 0 351 137 22 70 0 0 chr6 27711720 27711763 -154703479 + AT_rich Low_complexity Low_complexity 1 43 0 1939 151 0 10 chr6 27712086 27712378 -154702864 + AluSx SINE Alu 1 289 -23 1453 124 5 0 chr6 27712385 27712586 -154702656 + AluSg/x SINE Alu 82 283 -27 216 0 0 0 chr6 27713397 27713421 -154701821 + (CA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr6 27713674 27713700 -154701542 + (TAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr6 27713699 27713722 -154701520 + (GAA)n Simple_repeat Simple_repeat 2 24 0 * 2120 116 0 14 chr6 27713870 27714203 -154701039 + AluSx SINE Alu 1 329 0 181 346 47 37 chr6 27714900 27715007 -154700235 + MIR SINE MIR 33 140 -68 2951 148 91 36 chr6 27715235 27715852 -154699390 + MER39B LTR ERV1 3 653 0 25 31 0 0 chr6 27716084 27716116 -154699126 + AT_rich Low_complexity Low_complexity 1 32 0 283 277 48 0 chr6 27716206 27716289 -154698953 - Charlie4a DNA MER1_type 0 508 422 400 248 200 23 chr6 27716347 27716581 -154698661 - Charlie4a DNA MER1_type -181 327 53 1922 95 25 18 chr6 27717577 27717860 -154697382 - AluSg SINE Alu -20 290 6 25 31 0 0 chr6 27720156 27720188 -154695054 + AT_rich Low_complexity Low_complexity 1 32 0 2295 96 3 0 chr6 27720773 27721066 -154694176 + AluSq SINE Alu 1 294 -19 886 179 76 0 chr6 27722422 27722465 -154692777 + MER3 DNA MER1_type 8 64 -145 265 279 101 13 chr6 27722465 27722623 -154692619 - MER3 DNA MER1_type -3 206 35 293 288 0 0 chr6 27722687 27722760 -154692482 - MER5A DNA MER1_type -88 101 29 2257 91 0 7 chr6 27723638 27723934 -154691308 + AluSx SINE Alu 1 294 -18 2052 90 15 0 chr6 27723986 27724253 -154690989 + AluSx SINE Alu 20 290 -22 2028 103 21 0 chr6 27725335 27725617 -154689625 - AluSp SINE Alu -25 288 1 1595 137 16 42 chr6 27725707 27726013 -154689229 + AluSx SINE Alu 3 300 -12 2029 105 0 51 chr6 27726022 27726336 -154688906 + AluSx SINE Alu 1 298 -14 530 218 41 29 chr6 27727039 27727209 -154688033 - MER112 DNA MER1_type -12 248 77 294 297 59 34 chr6 27727278 27727396 -154687846 + LTR67 LTR ERVL 51 171 -386 315 275 28 18 chr6 27727570 27727679 -154687563 + LTR67 LTR ERVL 376 485 -72 1021 197 110 8 chr6 27727839 27728093 -154687149 + MLT1D LTR MaLR 3 282 -223 188 263 62 12 chr6 27728101 27728181 -154687061 + L2 LINE L2 2887 2970 -302 198 0 0 0 chr6 27728739 27728761 -154686481 + (A)n Simple_repeat Simple_repeat 1 22 0 554 293 82 9 chr6 27728851 27729262 -154685980 + LTR33 LTR ERVL 25 511 -10 22 0 0 0 chr6 27729775 27729797 -154685445 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 152 26 chr6 27729868 27730138 -154685104 - L1MC4 LINE L1 -153 7889 7586 2255 78 10 3 chr6 27731488 27731784 -154683458 + AluY SINE Alu 1 298 -13 2056 100 17 7 chr6 27732058 27732347 -154682895 - AluSq SINE Alu -21 292 1 1633 97 9 4 chr6 27733066 27733294 -154681948 - AluSg/x SINE Alu 0 310 82 2025 96 7 30 chr6 27733321 27733623 -154681619 + AluSq SINE Alu 2 296 -17 499 229 99 0 chr6 27733664 27733795 -154681447 + MER34 LTR ERV1 360 503 -39 1447 159 16 60 chr6 27733908 27734223 -154681019 - AluSx SINE Alu -11 301 1 22 0 0 0 chr6 27735225 27735247 -154679995 + AT_rich Low_complexity Low_complexity 1 22 0 328 182 0 152 chr6 27736426 27736525 -154678717 - FLAM SINE Alu -6 127 44 2533 43 3 3 chr6 27738078 27738377 -154676865 + AluY SINE Alu 1 299 -12 2476 61 3 0 chr6 27738390 27738687 -154676555 + AluY SINE Alu 1 298 -13 191 35 0 35 chr6 27738705 27738734 -154676508 + (TA)n Simple_repeat Simple_repeat 1 28 0 242 231 39 0 chr6 27739628 27739680 -154675562 - MLT1J LTR MaLR -220 291 238 2160 99 10 10 chr6 27739683 27739977 -154675265 + AluSx SINE Alu 7 300 -12 1752 171 10 13 chr6 27740218 27740517 -154674725 - AluJb SINE Alu -11 301 4 222 37 0 0 chr6 27740702 27740729 -154674513 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2084 87 44 0 chr6 27740746 27741021 -154674221 - AluSp SINE Alu -26 287 1 329 272 72 16 chr6 27741308 27741433 -154673809 - LTR24B LTR ERV1 -45 531 400 2629 115 10 30 chr6 27741438 27741837 -154673405 + LTR22A LTR ERVK 68 458 0 9312 139 3 6 chr6 27741894 27743282 -154671960 + HERVK22 LTR ERVK 81 1464 -5373 4952 120 13 3 chr6 27743292 27743992 -154671250 + HERVK22 LTR ERVK 4587 5293 -1544 1652 145 4 0 chr6 27743986 27744228 -154671014 + HERVK22 LTR ERVK 6595 6837 0 * 2934 133 13 2 chr6 27744228 27744681 -154670561 + LTR22A LTR ERVK 1 458 0 2058 108 35 3 chr6 27744733 27745020 -154670222 + AluSg SINE Alu 1 296 -14 768 218 6 18 chr6 27745154 27745319 -154669923 - FRAM SINE Alu -6 170 8 188 322 68 34 chr6 27745380 27745498 -154669744 + MIR SINE MIR 29 150 -112 1632 226 113 18 chr6 27745701 27746214 -154669028 + LTR48B LTR ERV1 1 562 -82 672 288 99 39 chr6 27746212 27746563 -154668679 + MLT1J2 LTR MaLR 9 386 -64 * 201 140 0 60 chr6 27746870 27746886 -154668356 + (GAAAA)n Simple_repeat Simple_repeat 5 20 -31 1537 182 9 64 chr6 27746886 27747216 -154668026 + AluJo SINE Alu 1 312 0 201 140 0 60 chr6 27747216 27747249 -154667993 + (GAAAA)n Simple_repeat Simple_repeat 20 51 0 30 27 0 0 chr6 27747786 27747823 -154667419 + AT_rich Low_complexity Low_complexity 1 37 0 2176 100 13 23 chr6 27747987 27748297 -154666945 + AluSx SINE Alu 1 307 -5 2348 92 0 0 chr6 27748297 27748591 -154666651 + AluSp SINE Alu 1 294 -19 3075 127 65 41 chr6 27748788 27749160 -154666082 - LTR49 LTR ERV1 0 595 203 2182 105 10 3 chr6 27749160 27749456 -154665786 - AluSx SINE Alu -14 298 1 3075 127 65 41 chr6 27749456 27749664 -154665578 - LTR49 LTR ERV1 -392 203 1 2204 179 17 20 chr6 27749668 27749721 -154665521 - LTR56 LTR ERV1 0 437 385 2335 81 0 3 chr6 27749721 27750016 -154665226 + AluSc SINE Alu 1 294 -15 1963 72 97 7 chr6 27750021 27750299 -154664943 + AluY SINE Alu 2 304 -7 2204 179 17 20 chr6 27750299 27750704 -154664538 - LTR56 LTR ERV1 -56 381 9 743 194 0 8 chr6 27750704 27750838 -154664404 + FLAM_C SINE Alu 1 133 0 1848 124 0 15 chr6 27751000 27751265 -154663977 - AluSx SINE Alu -12 300 40 453 234 27 9 chr6 27751265 27751376 -154663866 + MER4C LTR ERV1 353 465 0 1885 169 40 30 chr6 27751376 27751779 -154663463 + MER34B LTR ERV1 158 564 -1 751 303 73 24 chr6 27751843 27752173 -154663069 + L2 LINE L2 2967 3312 -1 2022 122 13 16 chr6 27752268 27752572 -154662670 - AluSx SINE Alu -9 303 1 3947 104 78 48 chr6 27752625 27752880 -154662362 + LTR8 LTR ERV1 1 247 -444 1733 131 93 0 chr6 27752880 27753148 -154662094 + AluSx SINE Alu 5 297 -15 3947 104 78 48 chr6 27753148 27753563 -154661679 + LTR8 LTR ERV1 247 691 0 189 132 0 0 chr6 27753925 27753963 -154661279 + (A)n Simple_repeat Simple_repeat 1 38 0 263 267 145 15 chr6 27754158 27754289 -154660953 + MER5B DNA MER1_type 8 155 -23 244 270 153 15 chr6 27754483 27754620 -154660622 - MER5A DNA MER1_type -6 183 28 198 0 0 0 chr6 27756932 27756954 -154658288 + (A)n Simple_repeat Simple_repeat 1 22 0 2119 90 14 3 chr6 27757735 27758024 -154657218 + AluSq SINE Alu 1 292 -21 24 0 0 0 chr6 27759101 27759125 -154656117 + AT_rich Low_complexity Low_complexity 1 24 0 938 193 41 50 chr6 27759327 27759545 -154655697 - AluJb SINE Alu -19 293 78 320 288 41 53 chr6 27759736 27759906 -154655336 + MIR SINE MIR 91 258 -4 1056 214 78 89 chr6 27760707 27761166 -154654076 + MER39 LTR ERV1 1 609 -98 2140 136 83 2 chr6 27761166 27761562 -154653680 - MSTA LTR MaLR 0 428 1 1056 214 78 89 chr6 27761562 27761660 -154653582 + MER39 LTR ERV1 609 707 0 1803 170 95 6 chr6 27761782 27762140 -154653102 - MLT1B LTR MaLR 0 390 1 1927 165 3 0 chr6 27762423 27762726 -154652516 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr6 27763129 27763150 -154652092 + AT_rich Low_complexity Low_complexity 1 21 0 1918 171 7 0 chr6 27763615 27763908 -154651334 - AluSx SINE Alu -17 295 1 2314 64 50 0 chr6 27763913 27764196 -154651046 - AluY SINE Alu -14 297 1 1260 280 174 18 chr6 27765020 27765721 -154649521 - L2 LINE L2 -299 3014 2208 1724 250 56 38 chr6 27766196 27766959 -154648283 + L2 LINE L2 2128 2904 -410 1789 120 58 7 chr6 27767122 27767398 -154647844 + AluSx SINE Alu 1 290 -22 191 264 83 14 chr6 27767544 27767616 -154647626 + L2 LINE L2 3185 3261 -11 2105 87 28 3 chr6 27767981 27768270 -154646972 + AluSc SINE Alu 1 296 -13 2032 99 43 3 chr6 27768380 27768662 -154646580 + AluSg SINE Alu 1 293 -17 251 193 53 0 chr6 27770274 27770331 -154644911 + tRNA-Gly-GGC tRNA tRNA 4 63 -11 353 131 384 40 chr6 27770440 27770539 -154644703 - FLAM_C SINE Alu 0 133 1 651 0 0 0 chr6 27770745 27770817 -154644425 + tRNA-Met-i tRNA tRNA 1 72 -3 2251 134 0 0 chr6 27771609 27771922 -154643320 - AluSq SINE Alu 0 313 1 321 228 101 0 chr6 27772024 27772103 -154643139 - MER68 LTR ERV1 -13 549 463 2779 143 5 2 chr6 27772225 27772653 -154642589 - LTR3 LTR ERVK 0 429 1 41579 170 22 6 chr6 27772656 27779225 -154636017 - HERVK3 LTR ERVK -2 7241 549 2500 80 0 6 chr6 27779225 27779538 -154635704 - AluY SINE Alu 0 311 1 41579 170 22 6 chr6 27779538 27780054 -154635188 - HERVK3 LTR ERVK -6694 549 43 2970 128 0 2 chr6 27780055 27780485 -154634757 - LTR3 LTR ERVK 0 429 1 1446 259 49 41 chr6 27781101 27781611 -154633631 - LTR53 LTR ERVL 0 519 6 180 0 0 0 chr6 27781808 27781828 -154633414 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 340 290 143 73 chr6 27781972 27782300 -154632942 + L2 LINE L2 2290 2640 -674 2220 98 0 3 chr6 27782373 27782695 -154632547 + AluSx SINE Alu 1 321 0 198 271 17 0 chr6 27782738 27782797 -154632445 - L2 LINE L2 -8 3305 3246 22 56 0 0 chr6 27783139 27783175 -154632067 + AT_rich Low_complexity Low_complexity 1 36 0 668 14 0 0 chr6 27783896 27783969 -154631273 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 229 276 17 0 chr6 27784054 27784112 -154631130 - L1M1 LINE L1 -6835 730 672 195 176 0 270 chr6 27785736 27785753 -154629489 - L2 LINE L2 0 3313 3293 2050 116 30 21 chr6 27785753 27786088 -154629154 - MER44D DNA MER2_type -1 608 1 195 176 0 270 chr6 27786088 27786292 -154628950 - L2 LINE L2 -20 3293 3152 2566 189 44 11 chr6 27786327 27786852 -154628390 + MER34 LTR ERV1 1 542 0 1664 158 62 7 chr6 27786881 27787153 -154628089 - AluJo SINE Alu -25 287 1 261 0 0 0 chr6 27787228 27787257 -154627985 + (CA)n Simple_repeat Simple_repeat 2 30 0 305 254 56 56 chr6 27787553 27787679 -154627563 - MLT1H LTR MaLR -394 155 30 1323 216 49 45 chr6 27787708 27788028 -154627214 + MER90 LTR ERV1 1 317 -174 1594 124 40 90 chr6 27788028 27788347 -154626895 - AluSx SINE Alu 0 304 1 1323 216 49 45 chr6 27788347 27788519 -154626723 + MER90 LTR ERV1 317 487 -4 297 0 0 0 chr6 27788927 27788960 -154626282 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 692 167 0 0 chr6 27788993 27789101 -154626141 - FLAM_C SINE Alu -34 109 2 222 298 0 48 chr6 27789225 27789329 -154625913 - MER5B DNA MER1_type -63 115 17 691 0 0 24 chr6 27789708 27789790 -154625452 - tRNA-Ser-AGC tRNA tRNA -2 83 4 24 32 0 0 chr6 27790415 27790446 -154624796 + AT_rich Low_complexity Low_complexity 1 31 0 728 147 0 70 chr6 27790446 27790575 -154624667 - FLAM_C SINE Alu -19 124 5 643 281 45 0 chr6 27790588 27790766 -154624476 - MER90 LTR ERV1 -421 193 8 1460 154 94 34 chr6 27790845 27791112 -154624130 + AluJb SINE Alu 1 283 -29 243 0 0 0 chr6 27791112 27791139 -154624103 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 359 259 60 60 chr6 27791408 27791563 -154623679 - L2 LINE L2 0 3313 3156 1978 166 3 0 chr6 27791563 27791865 -154623377 + AluJb SINE Alu 1 303 -9 359 259 60 60 chr6 27791865 27791894 -154623348 - L2 LINE L2 -156 3157 3129 295 271 52 10 chr6 27791941 27792037 -154623205 - MER5B DNA MER1_type 0 178 79 500 243 0 18 chr6 27792296 27792407 -154622835 + MLT1E LTR MaLR 45 153 -440 351 111 111 14 chr6 27792413 27792485 -154622757 + MLT1F1 LTR MaLR 489 567 0 1524 191 181 36 chr6 27792763 27793156 -154622086 + MLT1D LTR MaLR 1 450 -55 932 182 13 13 chr6 27793157 27793316 -154621926 + FRAM SINE Alu 1 156 -20 2209 105 7 3 chr6 27793318 27793624 -154621618 + AluSg SINE Alu 1 307 -3 281 146 218 0 chr6 27793624 27793679 -154621563 + MLT1D LTR MaLR 437 503 -2 306 197 82 0 chr6 27793857 27793918 -154621324 - tRNA-Gln-CAA tRNA tRNA -5 70 5 368 236 0 0 chr6 27794991 27795063 -154620179 - tRNA-Gln-CAA tRNA tRNA -3 72 1 655 14 0 0 chr6 27795415 27795487 -154619755 - tRNA-Gln-CAA tRNA tRNA -3 72 1 21 0 0 0 chr6 27795560 27795581 -154619661 + AT_rich Low_complexity Low_complexity 1 21 0 655 14 0 0 chr6 27795966 27796038 -154619204 - tRNA-Gln-CAA tRNA tRNA -3 72 1 732 12 0 0 chr6 27796815 27796897 -154618345 - tRNA-Ser-TCA tRNA tRNA -3 82 1 651 0 0 0 chr6 27797343 27797415 -154617827 - tRNA-Met-i tRNA tRNA -3 72 1 270 189 19 0 chr6 27797864 27797917 -154617325 - tRNA-Gly-GGC tRNA tRNA -20 54 1 1937 82 4 16 chr6 27798170 27798426 -154616816 + AluSx SINE Alu 16 268 -44 180 111 0 0 chr6 27798428 27798455 -154616787 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 231 167 0 0 chr6 27798485 27798521 -154616721 - MLT1F1 LTR MaLR -221 346 311 2217 60 71 3 chr6 27798526 27798808 -154616434 - AluSx SINE Alu -11 301 1 707 137 26 0 chr6 27798868 27798985 -154616257 - MER110A LTR ERV1 -310 158 39 472 118 0 59 chr6 27798992 27799077 -154616165 + AluJ/FLAM SINE Alu 9 88 -224 195 308 0 0 chr6 27799520 27799572 -154615670 + L2 LINE L2 3136 3187 -85 431 273 132 37 chr6 27799637 27800015 -154615227 - L1ME4a LINE L1 -4 6117 5704 1452 110 0 72 chr6 27800021 27800114 -154615128 - PABL_B LTR ERV1 0 667 569 2398 106 0 0 chr6 27800114 27800425 -154614817 - AluSx SINE Alu -1 311 1 1452 110 0 72 chr6 27800425 27800567 -154614675 - PABL_B LTR ERV1 -98 569 449 1124 76 0 44 chr6 27800566 27800724 -154614518 - PABL_B LTR ERV1 -516 151 1 * 2335 168 70 19 chr6 27800747 27801140 -154614102 + MER67A LTR ERV1 5 428 -115 2091 93 11 7 chr6 27801140 27801420 -154613822 + AluSq SINE Alu 1 281 -32 2335 168 70 19 chr6 27801420 27801501 -154613741 + MER67A LTR ERV1 428 503 -40 2190 105 13 10 chr6 27801580 27801885 -154613357 - AluSq SINE Alu -7 306 1 359 204 113 68 chr6 27802083 27802225 -154613017 - MER87 LTR ERV1 -393 148 15 * 557 80 13 0 chr6 27802224 27802299 -154612943 + MLT1B LTR MaLR 313 388 -2 198 0 0 0 chr6 27802423 27802445 -154612797 + (A)n Simple_repeat Simple_repeat 1 22 0 2323 95 0 3 chr6 27802454 27802749 -154612493 + AluSx SINE Alu 1 294 -18 648 14 0 0 chr6 27803321 27803393 -154611849 - tRNA-Trp tRNA tRNA -3 72 1 518 147 39 0 chr6 27804106 27804208 -154611034 + MER5A DNA MER1_type 84 189 0 2250 69 4 0 chr6 27804266 27804574 -154610668 + AluSp SINE Alu 37 345 0 1520 166 40 34 chr6 27804610 27804935 -154610307 - MLT1B LTR MaLR 0 390 64 396 150 0 0 chr6 27804987 27805047 -154610195 - MLT1B LTR MaLR -310 80 21 668 245 143 8 chr6 27805140 27805377 -154609865 - HAL1 LINE L1 -2236 271 3 23 33 0 0 chr6 27805571 27805601 -154609641 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr6 27805816 27805838 -154609404 + AT_rich Low_complexity Low_complexity 1 22 0 307 177 32 0 chr6 27806637 27806699 -154608543 - AluYb8 SINE Alu -8 300 237 1278 63 0 6 chr6 27806700 27806859 -154608383 - AluSg SINE Alu -152 158 1 650 27 0 0 chr6 27807037 27807110 -154608132 + tRNA-Arg-CGA tRNA tRNA 1 73 -3 411 216 30 126 chr6 27807311 27807510 -154607732 + MER5A DNA MER1_type 9 188 -1 367 260 141 40 chr6 27807689 27808026 -154607216 + L1MC4 LINE L1 7052 7415 -393 1373 134 9 18 chr6 27808161 27808384 -154606858 - AluJb SINE Alu -7 305 85 297 128 0 0 chr6 27808385 27808432 -154606810 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 1058 174 82 56 chr6 27808576 27808846 -154606396 - AluJo SINE Alu -35 277 1 340 288 146 9 chr6 27808886 27809119 -154606123 + L1MC4 LINE L1 7778 8042 0 23 33 0 0 chr6 27810025 27810055 -154605187 + AT_rich Low_complexity Low_complexity 1 30 0 1295 71 12 12 chr6 27810204 27810372 -154604870 + AluSg/x SINE Alu 133 300 -10 275 308 82 44 chr6 27810531 27810713 -154604529 - L2 LINE L2 -918 2396 2208 2218 75 19 44 chr6 27811235 27811553 -154603689 - AluSg SINE Alu 0 310 1 738 24 0 0 chr6 27811808 27811893 -154603349 + tRNA-Ser-TCC tRNA tRNA 1 85 0 654 14 0 0 chr6 27812359 27812432 -154602810 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 2055 108 14 14 chr6 27812690 27812986 -154602256 - AluSx SINE Alu -13 299 4 613 296 89 41 chr6 27813438 27813874 -154601368 - HAL1 LINE L1 -155 2352 1896 499 233 72 104 chr6 27814123 27814316 -154600926 + MIR SINE MIR 58 244 -18 651 0 0 0 chr6 27814520 27814592 -154600650 - tRNA-Met-i tRNA tRNA -3 72 1 653 27 0 0 chr6 27815660 27815735 -154599507 - tRNA-Trp tRNA tRNA 0 75 1 180 111 0 0 chr6 27816599 27816626 -154598616 + (CCCCG)n Simple_repeat Simple_repeat 1 27 0 404 115 86 137 chr6 27817041 27817180 -154598062 + MIR SINE MIR 124 255 -7 846 159 28 44 chr6 27817226 27817408 -154597834 - AluJb SINE Alu 0 312 134 1625 131 46 19 chr6 27817856 27818115 -154597127 + AluSx SINE Alu 30 295 -17 655 275 133 15 chr6 27818124 27818467 -154596775 + MLT1J2 LTR MaLR 34 436 -14 1913 162 34 0 chr6 27818827 27819123 -154596119 + AluJb SINE Alu 1 306 -6 2273 93 0 27 chr6 27819123 27819423 -154595819 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr6 27819533 27819568 -154595674 + AT_rich Low_complexity Low_complexity 1 35 0 650 265 103 0 chr6 27819623 27819808 -154595434 + MER63A DNA MER1_type 5 208 -2 2420 123 42 24 chr6 27819861 27820285 -154594957 - MSTB1 LTR MaLR 0 432 1 181 298 39 67 chr6 27820285 27820389 -154594853 - MIR SINE MIR -8 254 154 1155 257 73 34 chr6 27820506 27820942 -154594300 + MER90 LTR ERV1 107 559 -16 623 255 113 74 chr6 27821130 27821456 -154593786 - LTR33A LTR ERVL -107 416 78 1879 148 0 0 chr6 27821593 27821902 -154593340 + AluSx SINE Alu 18 326 0 2297 113 0 0 chr6 27822098 27822399 -154592843 - AluSg SINE Alu -9 301 1 1100 199 145 0 chr6 27822720 27822982 -154592260 + MER58B DNA MER1_type 1 300 -41 398 226 0 0 chr6 27823553 27823646 -154591596 - L2 LINE L2 0 3313 3221 356 302 86 29 chr6 27823652 27823791 -154591451 + MLT1L LTR MaLR 322 468 -147 268 179 54 0 chr6 27824428 27824484 -154590758 + MLT1L LTR MaLR 505 563 -52 542 118 16 20 chr6 27825193 27825289 -154589953 + MLT1C LTR MaLR 3 94 -280 968 88 161 0 chr6 27825729 27825866 -154589376 - AluSg SINE Alu -150 160 2 201 291 0 0 chr6 27826072 27826127 -154589115 + G-rich Low_complexity Low_complexity 4 58 0 262 125 0 62 chr6 27826129 27826193 -154589049 + (GGGAGA)n Simple_repeat Simple_repeat 2 61 0 190 155 48 24 chr6 27826237 27826321 -154588921 + GA-rich Low_complexity Low_complexity 4 89 0 2021 154 0 6 chr6 27826645 27826956 -154588286 - AluSx SINE Alu -3 309 1 900 140 0 70 chr6 27826959 27827116 -154588126 - AluJb SINE Alu -24 288 143 207 266 149 43 chr6 27827236 27827424 -154587818 - L2 LINE L2 -64 3249 3042 185 171 73 0 chr6 27827428 27827469 -154587773 + MIR SINE MIR 121 164 -98 592 338 56 45 chr6 27827691 27828542 -154586700 + MER66-int LTR ERV1 3312 4349 -3512 2373 97 0 7 chr6 27828542 27828852 -154586390 + AluSg SINE Alu 1 308 -2 592 338 56 45 chr6 27828852 27829120 -154586122 + MER66-int LTR ERV1 4349 4613 -3248 237 132 0 0 chr6 27829401 27829439 -154585803 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 855 118 0 0 chr6 27829478 27829588 -154585654 - FLAM_C SINE Alu -25 118 9 565 293 66 35 chr6 27829812 27830130 -154585112 + MER66-int LTR ERV1 3438 3765 -520 374 183 92 67 chr6 27830423 27830543 -154584699 + MER66-int LTR ERV1 6539 6661 -15 457 295 6 12 chr6 27830745 27830918 -154584324 + MER41B LTR ERV1 258 429 -206 1732 155 30 41 chr6 27831181 27831535 -154583707 + LTR29 LTR ERV1 303 622 0 245 316 51 34 chr6 27831665 27831782 -154583460 + MIR SINE MIR 4 122 -140 230 260 70 45 chr6 27832426 27832626 -154582616 + L1MC5 LINE L1 7534 7738 -223 1531 157 59 21 chr6 27832632 27832919 -154582323 + AluJo SINE Alu 1 298 -14 202 122 20 20 chr6 27833068 27833117 -154582125 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 2399 93 0 0 chr6 27833137 27833437 -154581805 - AluSx SINE Alu -7 305 6 2394 81 3 13 chr6 27833450 27833759 -154581483 - AluSx SINE Alu -6 306 1 1754 124 127 0 chr6 27833764 27834023 -154581219 - AluSx SINE Alu -20 292 1 288 196 0 0 chr6 27834192 27834243 -154580999 - L2 LINE L2 -4 3309 3259 1772 166 0 17 chr6 27834260 27834555 -154580687 + AluJb SINE Alu 1 290 -22 23 54 0 0 chr6 27835370 27835407 -154579835 + AT_rich Low_complexity Low_complexity 1 37 0 2678 151 2 28 chr6 27835520 27835649 -154579593 - MER70A-int LTR ERVL -2977 2046 1915 3974 153 51 3 chr6 27835649 27836321 -154578921 + MER44D DNA MER2_type 1 704 -1 2678 151 2 28 chr6 27836321 27836627 -154578615 - MER70A-int LTR ERVL -3108 1915 1622 3233 157 57 4 chr6 27836628 27837176 -154578066 - MER70A-int LTR ERVL -3832 1191 615 502 108 0 0 chr6 27837190 27837255 -154577987 - U6 snRNA snRNA -41 66 2 656 148 0 57 chr6 27837258 27837280 -154577962 - MER70A-int LTR ERVL -4376 647 625 2565 114 40 25 chr6 27837280 27837531 -154577711 - L1MA2 LINE L1 0 6304 6041 2306 121 0 0 chr6 27837531 27837844 -154577398 - AluSq SINE Alu 0 313 1 2565 114 40 25 chr6 27837844 27838040 -154577202 - L1MA2 LINE L1 -263 6041 5850 656 148 0 57 chr6 27838040 27838139 -154577103 - MER70A-int LTR ERVL -4398 625 533 553 188 10 20 chr6 27838149 27838250 -154576992 + MER70-int LTR ERVL 27 126 -4897 * 1574 202 24 12 chr6 27838247 27838588 -154576654 - MER70A-int LTR ERVL -4512 511 167 3207 117 29 64 chr6 27838588 27839216 -154576026 - MER4B LTR ERV1 0 779 1 863 213 12 12 chr6 27839217 27839386 -154575856 - MER70A-int LTR ERVL -4854 169 1 1997 187 8 124 chr6 27839386 27839920 -154575322 - MER70A LTR ERVL 0 472 1 256 215 0 129 chr6 27839981 27840028 -154575214 + MLT1J1 LTR MaLR 358 389 -57 1394 221 50 7 chr6 27840028 27840327 -154574915 - AluJb SINE Alu 0 312 1 256 215 0 129 chr6 27840327 27840372 -154574870 + MLT1J1 LTR MaLR 389 438 -8 1423 152 23 38 chr6 27840445 27840709 -154574533 + MER4E LTR ERV1 1 260 -519 2403 99 0 10 chr6 27840710 27841023 -154574219 - AluSq SINE Alu -3 310 1 1909 148 33 10 chr6 27841029 27841198 -154574044 - AluSx SINE Alu 0 312 131 1970 162 0 6 chr6 27841198 27841513 -154573729 - AluSq SINE Alu 0 313 1 1909 148 33 10 chr6 27841513 27841648 -154573594 - AluSx SINE Alu -181 131 1 1486 133 84 0 chr6 27841653 27841878 -154573364 - AluJb SINE Alu -11 301 58 679 87 0 0 chr6 27841890 27841982 -154573260 - AluSg/x SINE Alu -8 304 213 2085 118 0 0 chr6 27841984 27842293 -154572949 + AluSx SINE Alu 1 309 0 949 111 0 15 chr6 27842658 27842793 -154572449 + FLAM_C SINE Alu 1 133 0 310 275 33 11 chr6 27842826 27842917 -154572325 - MIR3 SINE MIR -34 174 82 292 183 0 67 chr6 27843022 27843082 -154572160 - 7SK RNA RNA -2 191 136 749 154 0 0 chr6 27843086 27843196 -154572046 + AluSq/x SINE Alu 2 111 -202 39 0 0 0 chr6 27843319 27843358 -154571884 + AT_rich Low_complexity Low_complexity 1 39 0 2055 109 33 0 chr6 27843358 27843633 -154571609 - AluSg SINE Alu -26 284 1 2099 145 0 3 chr6 27843760 27844064 -154571178 - AluSx SINE Alu -7 305 3 26 0 0 0 chr6 27844073 27844099 -154571143 + AT_rich Low_complexity Low_complexity 1 26 0 2397 89 0 13 chr6 27844423 27844737 -154570505 - AluSg SINE Alu 0 310 1 582 288 15 10 chr6 27845352 27845557 -154569685 - L2 LINE L2 0 3313 3108 452 151 27 0 chr6 27845573 27845646 -154569596 - AluJ/FRAM SINE Alu -21 291 217 499 220 23 38 chr6 27845648 27845780 -154569462 - AluJo/FLAM SINE Alu -170 132 3 1848 264 41 32 chr6 27845819 27846576 -154568666 - L2 LINE L2 -314 2999 2237 420 164 0 0 chr6 27846634 27846701 -154568541 - MLT1E LTR MaLR 0 593 527 1312 130 0 65 chr6 27846701 27846931 -154568311 + AluSg/x SINE Alu 85 299 -13 457 230 23 0 chr6 27846932 27847019 -154568223 - MLT1J LTR MaLR -53 601 513 192 292 45 11 chr6 27847115 27847204 -154568038 + L2 LINE L2 2560 2651 -663 964 204 78 0 chr6 27847555 27847761 -154567481 - LTR65 LTR ERV1 -267 402 181 42 20 0 0 chr6 27848077 27848126 -154567116 + AT_rich Low_complexity Low_complexity 1 49 0 499 243 89 106 chr6 27848132 27848536 -154566706 - MLT1J LTR MaLR -107 404 8 396 59 0 0 chr6 27849694 27849745 -154565497 + (TG)n Simple_repeat Simple_repeat 2 52 0 180 0 0 0 chr6 27849912 27849932 -154565310 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 299 306 82 26 chr6 27850427 27850659 -154564583 - L1ME LINE L1 -350 5771 5527 368 295 116 31 chr6 27851289 27851642 -154563600 - L1MC4a LINE L1 -157 5964 5582 265 299 10 31 chr6 27851703 27851800 -154563442 + L2 LINE L2 3213 3307 -6 324 240 71 52 chr6 27852030 27852184 -154563058 - L2 LINE L2 -656 2658 2502 908 306 45 32 chr6 27853485 27853530 -154561712 + LTR33 LTR ERVL 52 95 -426 2186 208 61 24 chr6 27853530 27854084 -154561158 - MER90 LTR ERV1 0 575 1 908 306 45 32 chr6 27854084 27854502 -154560740 + LTR33 LTR ERVL 95 521 0 217 286 0 0 chr6 27855002 27855058 -154560184 - L2 LINE L2 -13 3259 3204 808 273 99 96 chr6 27855152 27855202 -154560040 + L1MC4a LINE L1 5254 5302 -2506 1986 129 16 3 chr6 27855202 27855505 -154559737 + AluSx SINE Alu 1 307 -5 808 273 99 96 chr6 27855505 27855905 -154559337 + L1MC4a LINE L1 5302 5709 -2099 2240 126 0 0 chr6 27855905 27856198 -154559044 - AluSx SINE Alu -19 293 1 808 273 99 96 chr6 27856198 27856442 -154558800 + L1MC4a LINE L1 5709 5951 -1857 593 270 89 34 chr6 27856496 27856733 -154558509 - MIR SINE MIR -6 256 7 225 0 0 0 chr6 27857457 27857482 -154557760 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr6 27857808 27857828 -154557414 + (A)n Simple_repeat Simple_repeat 1 20 0 351 0 0 0 chr6 27858421 27858460 -154556782 + (A)n Simple_repeat Simple_repeat 1 39 0 1323 215 67 39 chr6 27859474 27859864 -154555378 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 27859999 27860025 -154555217 - MIR SINE MIR -113 149 124 2326 71 0 23 chr6 27860145 27860461 -154554781 + AluY SINE Alu 7 310 -1 487 296 35 23 chr6 27861505 27861677 -154553565 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 27861677 27861862 -154553380 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 27862453 27862528 -154552714 + L2 LINE L2 3190 3269 -3 1577 256 90 21 chr6 27862662 27863053 -154552189 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 27863053 27863363 -154551879 - AluJb SINE Alu 0 302 1 1577 256 90 21 chr6 27863363 27863557 -154551685 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 27863560 27863834 -154551408 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 27864474 27864624 -154550618 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 27865891 27866201 -154549041 - AluSx SINE Alu -6 306 6 1067 89 17 17 chr6 27866814 27866994 -154548248 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 27866997 27867131 -154548111 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 27868082 27868113 -154547129 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 27868355 27868662 -154546580 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 27868680 27868900 -154546342 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 27869140 27869179 -154546063 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 27869769 27870069 -154545173 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 27870180 27870265 -154544977 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 27871668 27871801 -154543441 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 27872930 27873059 -154542183 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 27873059 27873354 -154541888 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 27873354 27873955 -154541287 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 27877969 27878469 -154536773 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 27878499 27878988 -154536254 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 27879022 27879077 -154536165 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 27879282 27879517 -154535725 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 27879701 27880697 -154534545 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 27880750 27881330 -154533912 - MLT1E LTR MaLR 0 593 1 1854 161 7 0 chr6 27881530 27881840 -154533402 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 27881926 27882086 -154533156 - FRAM SINE Alu -20 156 1 213 318 23 11 chr6 27882370 27882458 -154532784 + L2 LINE L2 2273 2361 -953 793 289 40 4 chr6 27882588 27882841 -154532401 + MIR SINE MIR 1 262 0 286 238 0 38 chr6 27882878 27882958 -154532284 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 27883239 27883384 -154531858 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 27883742 27883885 -154531357 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 27883932 27884014 -154531228 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 27884078 27884299 -154530943 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 27884306 27884609 -154530633 + AluSx SINE Alu 6 310 -2 584 212 63 86 chr6 27884831 27884885 -154530357 - MLT1J LTR MaLR -24 487 433 239 0 32 0 chr6 27884885 27884916 -154530326 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 584 212 63 86 chr6 27884916 27885116 -154530126 - MLT1J LTR MaLR -78 433 239 1910 125 10 0 chr6 27885781 27886069 -154529173 + AluSx SINE Alu 1 291 -21 282 332 10 25 chr6 27886924 27887126 -154528116 + L1ME LINE L1 5637 5835 -286 365 271 19 58 chr6 27887251 27887287 -154527955 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 27887287 27887585 -154527657 - AluSx SINE Alu -14 298 1 365 271 19 58 chr6 27887585 27887755 -154527487 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 27887921 27888032 -154527210 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 27888777 27888983 -154526259 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 27889081 27889176 -154526066 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 27889412 27889565 -154525677 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 27890877 27891401 -154523841 - MER90 LTR ERV1 0 614 92 848 308 44 27 chr6 27891443 27891852 -154523390 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 27892343 27892384 -154522858 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 27892592 27893134 -154522108 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 27893199 27893356 -154521886 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 27894406 27894449 -154520793 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 27894695 27894759 -154520483 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 27894916 27894939 -154520303 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 27894939 27895031 -154520211 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 27895220 27895243 -154519999 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 27896371 27896772 -154518470 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 27896907 27896933 -154518309 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 27898102 27898270 -154516972 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 27898273 27898437 -154516805 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 27898910 27899194 -154516048 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 27899349 27899424 -154515818 + L2 LINE L2 3190 3269 -3 1773 249 92 20 chr6 27899552 27900093 -154515149 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 27900146 27900457 -154514785 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 27901083 27901235 -154514007 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 27901460 27901839 -154513403 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 27901839 27903488 -154511754 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 27903488 27903750 -154511492 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 27904928 27904961 -154510281 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 27906553 27906811 -154508431 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 27907817 27907889 -154507353 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 27908025 27908315 -154506927 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 27909048 27909253 -154505989 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 27909598 27909794 -154505448 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 27910309 27910396 -154504846 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 27911175 27911821 -154503421 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 27912321 27912456 -154502786 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 27914526 27914822 -154500420 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 27916340 27916823 -154498419 - Charlie1b DNA MER1_type -1 522 10 2786 157 84 34 chr6 27916853 27917376 -154497866 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 27917521 27918580 -154496662 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 27918608 27919125 -154496117 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 27919137 27919448 -154495794 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 27919564 27920134 -154495108 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 27920397 27920580 -154494662 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 27921091 27921340 -154493902 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 27921377 27921441 -154493801 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 27921767 27921881 -154493361 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 27922223 27922429 -154492813 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 27922467 27922514 -154492728 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 27922589 27922790 -154492452 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 27922800 27923114 -154492128 + AluSq SINE Alu 1 312 -1 560 246 17 132 chr6 27923345 27923634 -154491608 - MLT1J LTR MaLR -17 494 239 447 19 0 0 chr6 27924992 27925044 -154490198 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 344 15 31 chr6 27925248 27925443 -154489799 + L1ME LINE L1 5644 5835 -286 389 272 61 77 chr6 27925580 27925785 -154489457 - L1M4 LINE L1 -373 5801 5601 646 195 9 9 chr6 27925928 27926041 -154489201 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 27926674 27927017 -154488225 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 27927097 27927192 -154488050 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 27927422 27927576 -154487666 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 27928876 27928921 -154486321 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 27928921 27929471 -154485771 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 27929471 27929884 -154485358 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 27930391 27930471 -154484771 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 27930536 27930935 -154484307 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 27930935 27931247 -154483995 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 27931247 27931489 -154483753 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 27931545 27931584 -154483658 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 27931584 27931879 -154483363 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 27931879 27932081 -154483161 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 27934720 27934847 -154480395 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 27934920 27935309 -154479933 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 27936608 27936780 -154478462 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 27936783 27936965 -154478277 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 27937556 27937631 -154477611 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 27937802 27938098 -154477144 - AluSc SINE Alu -17 292 1 1669 219 82 45 chr6 27938113 27938484 -154476758 - MLT1E2 LTR MaLR -49 577 182 1553 180 51 3 chr6 27938484 27938779 -154476463 - AluJo SINE Alu -3 309 1 1669 219 82 45 chr6 27938779 27938896 -154476346 - MLT1E2 LTR MaLR -444 182 71 445 309 52 100 chr6 27938976 27939325 -154475917 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 27939570 27939621 -154475621 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 27939889 27940048 -154475194 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 27941920 27941966 -154473276 + (GA)n Simple_repeat Simple_repeat 1 43 0 597 206 39 105 chr6 27943074 27943360 -154471882 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 27944360 27944458 -154470784 - AluSg/x SINE Alu -7 303 201 318 259 47 0 chr6 27944459 27944544 -154470698 + MER94 DNA DNA 36 124 -10 1853 147 0 7 chr6 27944845 27945152 -154470090 + AluSx SINE Alu 1 305 -7 1725 171 0 0 chr6 27945720 27946001 -154469241 + AluSx SINE Alu 1 281 -31 246 32 0 0 chr6 27946004 27946035 -154469207 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1144 162 9 24 chr6 27946039 27946249 -154468993 + AluJb SINE Alu 87 293 -19 870 198 6 6 chr6 27946617 27946779 -154468463 + FRAM SINE Alu 1 159 -17 487 296 35 23 chr6 27997513 27997685 -154417557 - MIR SINE MIR -37 225 52 443 314 108 5 chr6 27997685 27997870 -154417372 - MIR SINE MIR 0 262 59 235 253 67 0 chr6 27998461 27998536 -154416706 + L2 LINE L2 3190 3269 -3 1593 254 90 21 chr6 27998670 27999061 -154416181 - MLT1E2 LTR MaLR -8 618 180 1539 190 38 7 chr6 27999061 27999371 -154415871 - AluJb SINE Alu 0 302 1 1593 254 90 21 chr6 27999371 27999565 -154415677 - MLT1E2 LTR MaLR -446 180 1 374 285 66 117 chr6 27999568 27999842 -154415400 - LTR16C LTR ERVL -62 429 170 445 240 60 53 chr6 28000482 28000632 -154414610 - MLT1G LTR MaLR -18 532 362 1885 136 0 29 chr6 28001899 28002209 -154413033 - AluSx SINE Alu -6 306 6 1046 94 17 17 chr6 28002818 28002998 -154412244 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 437 164 8 37 chr6 28003001 28003135 -154412107 + GA-rich Low_complexity Low_complexity 4 133 0 225 65 0 0 chr6 28004086 28004117 -154411125 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1249 188 14 32 chr6 28004359 28004666 -154410576 - AluJo SINE Alu 0 307 6 370 254 136 0 chr6 28004684 28004904 -154410338 - MER33 DNA MER1_type -69 255 6 183 26 103 0 chr6 28005144 28005183 -154410059 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2176 100 3 7 chr6 28005773 28006073 -154409169 - AluSg SINE Alu -11 299 1 252 306 24 0 chr6 28006184 28006269 -154408973 + MER94 DNA DNA 36 122 -12 869 173 0 0 chr6 28007672 28007805 -154407437 + FLAM_C SINE Alu 1 133 0 967 272 86 58 chr6 28008934 28009063 -154406179 - L2 LINE L2 -4 3309 3185 1917 136 17 0 chr6 28009063 28009358 -154405884 + AluSg SINE Alu 1 300 -10 967 272 86 58 chr6 28009358 28009959 -154405283 - L2 LINE L2 -128 3185 2567 1361 256 56 24 chr6 28013973 28014473 -154400769 - Charlie1b DNA MER1_type 0 523 8 2106 175 30 33 chr6 28014503 28014992 -154400250 + MLT2B3 LTR ERVL 1 508 -41 333 91 0 36 chr6 28015026 28015081 -154400161 + MLT2B3 LTR ERVL 461 513 -2 969 174 153 17 chr6 28015286 28015521 -154399721 - MLT1A1 LTR MaLR 0 365 99 2104 267 80 24 chr6 28015705 28016701 -154398541 - L2 LINE L2 0 3313 2236 2311 241 47 24 chr6 28016754 28017334 -154397908 - MLT1E LTR MaLR 0 593 1 1819 168 7 0 chr6 28017536 28017846 -154397396 - AluSx SINE Alu 0 312 1 797 181 6 25 chr6 28017932 28018092 -154397150 - FRAM SINE Alu -20 156 1 228 274 0 0 chr6 28018412 28018463 -154396779 + L2 LINE L2 2311 2361 -953 793 289 40 4 chr6 28018593 28018846 -154396396 + MIR SINE MIR 1 262 0 279 250 0 38 chr6 28018883 28018963 -154396279 + L2 LINE L2 2585 2661 -653 233 317 228 0 chr6 28019245 28019390 -154395852 - MIR SINE MIR -13 249 72 731 189 7 21 chr6 28019747 28019890 -154395352 - MIR SINE MIR -41 221 81 211 244 73 37 chr6 28019937 28020019 -154395223 + L2 LINE L2 3229 3313 0 1062 167 81 18 chr6 28020083 28020304 -154394938 - LTR65 LTR ERV1 -259 410 176 2003 129 7 0 chr6 28020311 28020614 -154394628 + AluSx SINE Alu 6 310 -2 515 200 32 158 chr6 28020836 28021121 -154394121 - MLT1J LTR MaLR -24 487 239 1910 125 10 0 chr6 28021786 28022074 -154393168 + AluSx SINE Alu 1 291 -21 295 332 10 25 chr6 28022929 28023131 -154392111 + L1ME LINE L1 5637 5835 -286 346 275 19 58 chr6 28023256 28023292 -154391950 - L1ME LINE L1 -307 5814 5778 1995 138 0 0 chr6 28023292 28023590 -154391652 - AluSx SINE Alu -14 298 1 346 275 19 58 chr6 28023590 28023760 -154391482 - L1ME LINE L1 -343 5778 5616 740 162 0 0 chr6 28023926 28024037 -154391205 - AluJb SINE Alu -190 122 12 277 316 15 19 chr6 28024782 28024988 -154390254 - L1MC/D LINE L1 -302 5819 5618 277 295 11 32 chr6 28025086 28025181 -154390061 + L2 LINE L2 3215 3307 -6 340 242 85 26 chr6 28025417 28025570 -154389672 - L2 LINE L2 -663 2651 2490 2422 197 19 21 chr6 28026882 28027406 -154387836 - MER90 LTR ERV1 0 614 92 818 307 44 29 chr6 28027448 28027858 -154387384 + LTR33 LTR ERVL 106 521 0 180 268 0 0 chr6 28028349 28028390 -154386852 - L2 LINE L2 -5 3267 3227 935 282 107 57 chr6 28028598 28029140 -154386102 + L1MC4 LINE L1 5383 5951 -1857 452 312 6 19 chr6 28029205 28029362 -154385880 - MIR SINE MIR -101 161 7 221 139 23 0 chr6 28030412 28030455 -154384787 + A-rich Low_complexity Low_complexity 2 45 0 203 219 16 47 chr6 28030701 28030765 -154384477 + A-rich Low_complexity Low_complexity 5 66 0 186 43 0 0 chr6 28030922 28030945 -154384297 + (CA)n Simple_repeat Simple_repeat 2 24 0 262 239 11 0 chr6 28030945 28031037 -154384205 + L1MC4 LINE L1 6610 6702 -1340 207 0 0 0 chr6 28031226 28031249 -154383993 + (A)n Simple_repeat Simple_repeat 1 23 0 1307 234 55 55 chr6 28032377 28032778 -154382464 - LTR33 LTR ERVL -95 426 26 193 77 0 0 chr6 28032913 28032939 -154382303 - MIR SINE MIR -113 149 124 490 244 71 36 chr6 28034108 28034276 -154380966 - MIR SINE MIR -37 225 52 438 305 98 6 chr6 28034279 28034443 -154380799 - MIR SINE MIR -3 259 81 2041 113 3 0 chr6 28034916 28035200 -154380042 - AluSc SINE Alu -15 294 10 221 253 67 0 chr6 28035355 28035430 -154379812 + L2 LINE L2 3190 3269 -3 1798 248 92 20 chr6 28035558 28036099 -154379143 - MLT1E2 LTR MaLR 0 626 47 419 280 61 106 chr6 28036152 28036463 -154378779 - LTR16C LTR ERVL -60 431 135 509 230 15 46 chr6 28037089 28037241 -154378001 - MLT1G LTR MaLR -19 532 361 2288 132 13 24 chr6 28037466 28037845 -154377397 - THE1C LTR MaLR 0 375 1 10144 124 6 48 chr6 28037845 28039494 -154375748 - THE1C-int LTR MaLR 0 1580 1 1745 107 65 4 chr6 28039494 28039756 -154375486 - THE1C LTR MaLR 0 375 98 203 152 0 0 chr6 28040934 28040967 -154374275 + (TG)n Simple_repeat Simple_repeat 1 33 0 446 202 132 97 chr6 28042559 28042817 -154372425 - MER33 DNA MER1_type 0 324 58 314 250 14 0 chr6 28043823 28043895 -154371347 + MER94 DNA DNA 36 108 -26 1850 141 7 7 chr6 28044031 28044321 -154370921 - AluSx SINE Alu -22 290 1 1080 190 10 24 chr6 28045054 28045259 -154369983 + AluJb SINE Alu 87 288 -24 918 179 51 10 chr6 28045604 28045800 -154369442 + AluJo SINE Alu 89 292 -20 299 195 0 69 chr6 28046315 28046402 -154368840 + CT-rich Low_complexity Low_complexity 3 83 0 901 294 137 15 chr6 28047181 28047827 -154367415 - L2 LINE L2 -4 3309 2567 817 156 0 15 chr6 28048327 28048462 -154366780 + FLAM_C SINE Alu 1 133 0 1906 122 10 7 chr6 28050532 28050828 -154364414 + AluSp SINE Alu 1 297 -16 1211 240 95 33 chr6 28052346 28052829 -154362413 - Charlie1b DNA MER1_type -1 522 10 2771 157 84 34 chr6 28052859 28053382 -154361860 + MLT2B3 LTR ERVL 6 554 0 6869 113 29 18 chr6 28053527 28054586 -154360656 + MER11C LTR ERVK 1 1071 0 1290 249 89 46 chr6 28054614 28055131 -154360111 - L2 LINE L2 -492 2822 2284 1982 137 0 0 chr6 28055143 28055454 -154359788 + AluSx SINE Alu 2 312 0 1837 228 93 53 chr6 28055570 28056140 -154359102 - MLT1E LTR MaLR 0 593 1 801 191 6 44 chr6 28056403 28056586 -154358656 - AluJo SINE Alu -11 301 126 816 265 56 4 chr6 28057097 28057346 -154357896 + MIR SINE MIR 1 262 0 292 266 0 0 chr6 28057383 28057447 -154357795 + L2 LINE L2 2585 2648 -666 204 325 140 9 chr6 28057773 28057887 -154357355 - MIR SINE MIR -62 200 72 687 243 160 24 chr6 28058229 28058435 -154356807 - MIR SINE MIR -25 237 4 250 191 0 0 chr6 28058473 28058520 -154356722 + L2 LINE L2 3267 3313 0 891 174 119 15 chr6 28058595 28058796 -154356446 - LTR65 LTR ERV1 -267 402 181 2129 102 3 10 chr6 28058806 28059120 -154356122 + AluSq SINE Alu 1 312 -1 531 250 21 132 chr6 28059351 28059639 -154355603 - MLT1J LTR MaLR -17 494 239 375 23 0 0 chr6 28060997 28061041 -154354201 + (TG)n Simple_repeat Simple_repeat 1 44 0 247 344 15 31 chr6 28061245 28061440 -154353802 + L1ME LINE L1 5644 5835 -286 646 195 9 9 chr6 28061925 28062038 -154353204 - AluJo SINE Alu -190 122 10 342 299 120 44 chr6 28062671 28063014 -154352228 - L1ME4a LINE L1 -157 5964 5593 282 253 32 53 chr6 28063094 28063189 -154352053 + L2 LINE L2 3215 3307 -6 379 234 71 52 chr6 28063419 28063573 -154351669 - L2 LINE L2 -656 2658 2502 937 294 59 35 chr6 28064873 28064918 -154350324 + LTR33 LTR ERVL 52 94 -427 1900 234 64 18 chr6 28064918 28065468 -154349774 - MER90 LTR ERV1 0 575 1 937 294 59 35 chr6 28065468 28065881 -154349361 + LTR33 LTR ERVL 94 521 0 239 225 50 75 chr6 28066388 28066468 -154348774 - L2 LINE L2 -5 3267 3190 738 266 154 82 chr6 28066533 28066932 -154348310 + L1MC4a LINE L1 5263 5728 -2080 1864 137 3 0 chr6 28066932 28067244 -154347998 - AluSx SINE Alu 0 313 1 738 266 154 82 chr6 28067244 28067486 -154347756 + L1MC4a LINE L1 5728 5951 -1857 705 314 54 4 chr6 28067542 28067581 -154347661 - MIR SINE MIR -2 260 224 1728 166 0 3 chr6 28067581 28067876 -154347366 - AluSx SINE Alu -14 298 5 705 314 54 4 chr6 28067876 28068078 -154347164 - MIR SINE MIR -38 224 7 225 346 87 16 chr6 28070717 28070844 -154344398 + MIR SINE MIR 68 203 -59 1363 242 62 31 chr6 28070917 28071306 -154343936 - LTR33 LTR ERVL -95 426 26 536 279 35 23 chr6 28072605 28072777 -154342465 - MIR SINE MIR -37 225 52 439 297 110 6 chr6 28072780 28072962 -154342280 - MIR SINE MIR -3 259 59 235 253 67 0 chr6 28073553 28073628 -154341614 + L2 LINE L2 3190 3269 -3 1956 115 0 14 chr6 28073799 28074095 -154341147 - AluSc SINE Alu -17 292 1 1685 217 82 45 chr6 28074110 28074481 -154340761 - MLT1E2 LTR MaLR -49 577 182 1544 180 51 3 chr6 28074481 28074775 -154340467 - AluJo SINE Alu -4 308 1 1685 217 82 45 chr6 28074775 28074892 -154340350 - MLT1E2 LTR MaLR -444 182 71 417 312 52 100 chr6 28074972 28075321 -154339921 - LTR16C LTR ERVL -62 429 98 240 216 0 0 chr6 28075566 28075617 -154339625 + MLT1K LTR MaLR 190 240 -348 485 242 26 44 chr6 28075885 28076044 -154339198 - MLT1G LTR MaLR -15 531 362 263 43 0 65 chr6 28077916 28077962 -154337280 + (GA)n Simple_repeat Simple_repeat 1 43 0 610 203 39 105 chr6 28079070 28079356 -154335886 - MER33 DNA MER1_type 0 324 58 424 122 102 51 chr6 28080377 28080475 -154334767 - AluSg/x SINE Alu -7 303 201 318 259 47 0 chr6 28080476 28080561 -154334681 + MER94 DNA DNA 36 124 -10 1829 150 0 7 chr6 28080862 28081169 -154334073 + AluSx SINE Alu 1 305 -7 1741 167 0 0 chr6 28081737 28082018 -154333224 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr6 28082021 28082048 -154333194 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1169 156 9 24 chr6 28082052 28082263 -154332979 + AluJb SINE Alu 87 294 -18 870 198 6 6 chr6 28082632 28082794 -154332448 + FRAM SINE Alu 1 159 -17 263 281 0 24 chr6 28083314 28083396 -154331846 + CT-rich Low_complexity Low_complexity 4 83 0 273 29 0 0 chr6 28083978 28084012 -154331230 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1927 134 3 3 chr6 28084045 28084336 -154330906 - AluSx SINE Alu -21 291 1 1013 287 113 15 chr6 28084497 28085161 -154330081 - L2 LINE L2 -4 3309 2567 774 178 0 15 chr6 28085649 28085784 -154329458 + FLAM_C SINE Alu 1 133 0 2119 96 0 0 chr6 28087544 28087846 -154327396 - AluSx SINE Alu 0 302 1 1090 190 24 108 chr6 28089566 28090092 -154325150 - Charlie1b DNA MER1_type 0 523 42 847 182 30 66 chr6 28090098 28090296 -154324946 + AluJo SINE Alu 104 294 -18 1943 100 14 10 chr6 28090300 28090589 -154324653 + AluSq SINE Alu 1 290 -23 2903 173 27 20 chr6 28090689 28091238 -154324004 + MLT2B3 LTR ERVL 1 553 -1 850 226 49 10 chr6 28091449 28091653 -154323589 - MLT1A1 LTR MaLR 0 365 154 401 132 74 4 chr6 28091680 28091884 -154323358 + AluSx SINE Alu 1 297 -13 311 0 0 25 chr6 28091884 28091924 -154323318 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 577 255 29 39 chr6 28091925 28092129 -154323113 - L2 LINE L2 -876 2438 2237 473 265 77 88 chr6 28092222 28092573 -154322669 - MLT1J LTR MaLR -46 465 119 2731 215 34 32 chr6 28092820 28093489 -154321753 - LTR27 LTR ERV1 0 802 2 854 140 180 181 chr6 28094354 28094699 -154320543 + MER57B LTR ERV1 50 403 0 1734 125 16 46 chr6 28094992 28095297 -154319945 - AluSx SINE Alu -16 296 1 774 162 95 7 chr6 28095391 28095539 -154319703 - MER88 LTR ERVL 0 464 304 813 165 0 15 chr6 28095861 28095994 -154319248 + FLAM_C SINE Alu 2 132 -1 874 126 21 7 chr6 28096734 28096877 -154318365 + MER4E LTR ERV1 630 774 -5 351 136 0 0 chr6 28097317 28097376 -154317866 + (TTC)n Simple_repeat Simple_repeat 1 59 0 632 120 162 34 chr6 28097466 28097583 -154317659 - FLAM_C SINE Alu -11 132 1 284 233 0 55 chr6 28100120 28100193 -154315049 - MER63 DNA MER1_type -3 1059 991 330 209 0 0 chr6 28100195 28100262 -154314980 - MER63 DNA MER1_type -97 739 673 2158 103 3 0 chr6 28100331 28100621 -154314621 - AluSp SINE Alu -22 291 1 207 0 0 0 chr6 28101055 28101078 -154314164 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 309 278 72 0 chr6 28101078 28101175 -154314067 - MIR SINE MIR -67 141 38 811 271 88 51 chr6 28101508 28101877 -154313365 + LTR16A LTR ERVL 5 400 -50 353 190 140 70 chr6 28101903 28101966 -154313276 + Charlie1 DNA MER1_type 1 75 -448 1993 102 67 0 chr6 28101966 28102249 -154312993 - AluSx SINE Alu -10 302 1 353 190 140 70 chr6 28102249 28102285 -154312957 + Charlie1 DNA MER1_type 75 107 -416 1824 148 0 10 chr6 28102286 28102584 -154312658 + AluJb SINE Alu 1 295 -17 496 126 0 46 chr6 28102584 28102671 -154312571 + AluJo SINE Alu 52 134 -178 588 165 45 30 chr6 28102684 28102817 -154312425 + Charlie1 DNA MER1_type 100 234 -2527 1817 138 24 3 chr6 28102830 28103121 -154312121 + AluSx SINE Alu 1 297 -15 1669 181 0 3 chr6 28103125 28103424 -154311818 - AluJb SINE Alu -14 298 1 690 192 8 0 chr6 28103424 28103549 -154311693 + Charlie1 DNA MER1_type 2636 2761 0 1552 186 23 75 chr6 28103671 28103754 -154311488 + L1M4 LINE L1 7 93 -6449 2105 104 3 3 chr6 28103754 28104051 -154311191 + AluSp SINE Alu 1 297 -16 1552 186 23 75 chr6 28104051 28104354 -154310888 + L1M4 LINE L1 93 373 -6169 889 244 96 96 chr6 28104354 28104929 -154310313 - MER34C LTR ERV1 0 585 11 1635 214 17 53 chr6 28104939 28105294 -154309948 + L1M4 LINE L1 370 711 -5831 183 42 0 0 chr6 28105747 28105771 -154309471 + (GA)n Simple_repeat Simple_repeat 1 24 0 197 277 30 89 chr6 28106493 28106523 -154308719 + MIR3 SINE MIR 78 108 -100 1853 163 41 30 chr6 28106523 28106892 -154308350 - THE1C LTR MaLR -2 373 1 197 277 30 89 chr6 28106892 28106962 -154308280 + MIR3 SINE MIR 108 172 -36 181 214 0 48 chr6 28107003 28107045 -154308197 - MIR SINE MIR -64 198 159 1108 178 15 5 chr6 28107049 28107274 -154307968 - AluJo SINE Alu 0 312 86 527 257 69 61 chr6 28107410 28107825 -154307417 - MLT1H LTR MaLR 0 549 72 201 74 0 0 chr6 28108724 28108751 -154306491 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1813 150 0 17 chr6 28108966 28109266 -154305976 + AluSx SINE Alu 1 295 -17 263 313 43 17 chr6 28109274 28109389 -154305853 - MLT1-int LTR MaLR -835 536 419 1395 233 57 20 chr6 28109501 28109853 -154305389 - MER21B LTR ERV1 -23 840 476 26 0 0 0 chr6 28109856 28109882 -154305360 + AT_rich Low_complexity Low_complexity 1 26 0 1110 211 104 123 chr6 28109901 28110099 -154305143 - MER21B LTR ERV1 -371 492 292 1330 175 183 23 chr6 28110099 28110487 -154304755 + LTR7 LTR ERV1 1 450 0 1110 211 104 123 chr6 28110487 28110790 -154304452 - MER21B LTR ERV1 -571 292 1 253 269 28 64 chr6 28110920 28111061 -154304181 - MLT1E LTR MaLR 0 593 458 888 114 0 15 chr6 28111247 28111378 -154303864 + AluJ SINE Alu 5 133 -169 1336 131 5 22 chr6 28111378 28111538 -154303704 + AluSg/x SINE Alu 86 242 -70 3963 109 24 2 chr6 28111538 28112090 -154303152 - LTR6A LTR ERV1 0 564 1 1336 131 5 22 chr6 28112090 28112151 -154303091 + AluSg/x SINE Alu 242 303 -9 689 180 158 0 chr6 28112152 28112291 -154302951 + AluJ SINE Alu 136 296 -16 2039 116 0 0 chr6 28113172 28113466 -154301776 + AluSx SINE Alu 1 294 -18 1279 211 107 28 chr6 28113508 28113811 -154301431 + MER90 LTR ERV1 1 404 -210 1794 159 32 0 chr6 28113811 28114104 -154301138 + AluJb SINE Alu 1 293 -19 1279 211 107 28 chr6 28114104 28114241 -154301001 + MER90 LTR ERV1 404 529 -85 626 152 9 9 chr6 28115789 28115894 -154299348 + FLAM_A SINE Alu 4 108 -34 214 240 40 0 chr6 28116005 28116055 -154299187 + MER5A DNA MER1_type 60 111 -78 519 263 157 59 chr6 28116077 28116606 -154298636 + HAL1 LINE L1 1891 2471 -36 2102 125 21 0 chr6 28116732 28117020 -154298222 + AluSx SINE Alu 1 294 -18 201 178 56 111 chr6 28117025 28117115 -154298127 - L2 LINE L2 -1342 1972 1888 2138 123 7 3 chr6 28118124 28118425 -154296817 + AluSx SINE Alu 1 302 -10 202 250 17 33 chr6 28118697 28118757 -154296485 - L2 LINE L2 -568 2746 2688 226 235 82 12 chr6 28118935 28119020 -154296222 + L1P LINE L1 5317 5407 -747 21 0 0 0 chr6 28119033 28119054 -154296188 + AT_rich Low_complexity Low_complexity 1 21 0 2123 115 3 11 chr6 28119188 28119497 -154295745 + AluSx SINE Alu 1 307 0 253 261 134 63 chr6 28119498 28119640 -154295602 + L1ME LINE L1 5605 5756 -365 24 53 0 0 chr6 28119796 28119834 -154295408 + AT_rich Low_complexity Low_complexity 1 38 0 431 210 72 83 chr6 28120098 28120279 -154294963 - MIR SINE MIR 0 262 84 2172 89 7 0 chr6 28120869 28121172 -154294070 + AluSg SINE Alu 1 305 0 2225 136 59 15 chr6 28122285 28122676 -154292566 - MER83 LTR ERV1 0 448 41 255 284 154 24 chr6 28122804 28122973 -154292269 - L1ME LINE L1 -236 5885 5695 714 195 47 7 chr6 28123288 28123437 -154291805 + FRAM SINE Alu 11 165 -11 1748 135 76 17 chr6 28123440 28123729 -154291513 + AluSx SINE Alu 5 310 -2 312 110 27 14 chr6 28123847 28123920 -154291322 + (TA)n Simple_repeat Simple_repeat 2 75 0 1597 162 87 0 chr6 28124733 28124999 -154290243 - AluJo SINE Alu -23 289 1 1871 163 0 14 chr6 28125664 28125958 -154289284 - AluSx SINE Alu -20 292 3 2386 73 0 20 chr6 28126071 28126373 -154288869 + AluY SINE Alu 1 296 -15 2206 121 0 0 chr6 28127173 28127462 -154287780 + AluSx SINE Alu 1 289 -23 1875 138 14 10 chr6 28127675 28127966 -154287276 + AluSx SINE Alu 1 292 -20 2276 110 37 103 chr6 28130905 28130975 -154284267 - MSTA LTR MaLR -2 426 353 2447 91 0 0 chr6 28130975 28131282 -154283960 + AluSg SINE Alu 1 307 -3 2276 110 37 103 chr6 28131282 28131525 -154283717 - MSTA LTR MaLR -75 353 150 2199 82 14 24 chr6 28131525 28131819 -154283423 + AluSx SINE Alu 1 291 -21 2276 110 37 103 chr6 28131819 28131960 -154283282 - MSTA LTR MaLR -278 150 1 827 226 0 18 chr6 28132174 28132338 -154282904 + MER21B LTR ERV1 332 492 -371 23 0 0 0 chr6 28132941 28132964 -154282278 + AT_rich Low_complexity Low_complexity 1 23 0 1918 143 0 7 chr6 28133260 28133581 -154281661 + AluSx SINE Alu 1 319 0 255 265 133 0 chr6 28134278 28134376 -154280866 - L1ME4a LINE L1 -76 6045 5935 318 127 42 0 chr6 28134389 28134460 -154280782 + (TA)n Simple_repeat Simple_repeat 2 75 0 222 210 310 10 chr6 28134601 28134701 -154280541 + MER5A DNA MER1_type 55 184 -5 2246 111 7 0 chr6 28134791 28135097 -154280145 + AluSx SINE Alu 2 309 -3 497 314 66 22 chr6 28135163 28135389 -154279853 - MIR SINE MIR -7 255 20 761 329 81 7 chr6 28135809 28136265 -154278977 + L2 LINE L2 2203 2692 -622 516 81 0 0 chr6 28136268 28136342 -154278900 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 2358 101 0 0 chr6 28136358 28136666 -154278576 + AluSc SINE Alu 1 308 -1 245 125 0 0 chr6 28136680 28136712 -154278530 - Alu SINE Alu -20 281 250 974 105 0 0 chr6 28136722 28136855 -154278387 - FLAM_C SINE Alu 0 133 1 415 267 149 76 chr6 28136855 28137418 -154277824 + L2 LINE L2 2687 3296 -17 475 120 0 0 chr6 28137628 28137703 -154277539 + MER53 DNA DNA 107 181 -8 261 180 0 0 chr6 28137986 28138036 -154277206 + MLT1I LTR MaLR 91 140 -269 310 253 0 0 chr6 28138183 28138270 -154276972 + G-rich Low_complexity Low_complexity 1 87 0 2027 96 11 21 chr6 28138270 28138551 -154276691 - AluSq SINE Alu -35 278 1 2129 112 0 33 chr6 28138579 28138883 -154276359 - AluSq SINE Alu -19 294 1 542 235 142 27 chr6 28138907 28139090 -154276152 + AluJo SINE Alu 85 288 -24 38 22 0 0 chr6 28139250 28139295 -154275947 + AT_rich Low_complexity Low_complexity 1 45 0 2263 87 0 3 chr6 28139305 28139593 -154275649 + AluSq SINE Alu 2 288 -25 693 120 0 10 chr6 28139593 28139693 -154275549 - U6 snRNA snRNA -8 99 1 520 206 7 73 chr6 28139729 28139865 -154275377 + L2 LINE L2 3183 3309 -4 1339 108 5 18 chr6 28140012 28140234 -154275008 - L1MA8 LINE L1 -3 6288 6070 184 292 92 0 chr6 28140237 28140302 -154274940 - MER5A DNA MER1_type -77 112 42 262 314 0 67 chr6 28140393 28140498 -154274744 - MIR SINE MIR -84 124 27 270 176 0 0 chr6 28140686 28140737 -154274505 - L1ME3A LINE L1 0 6170 6120 298 107 18 62 chr6 28141051 28141163 -154274079 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 739 0 0 0 chr6 28141442 28141525 -154273717 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 15641 158 69 43 chr6 28141952 28145592 -154269650 - MER109 Unknown Unknown 0 2432 -1114 2373 100 0 0 chr6 28145592 28145892 -154269350 + AluSc SINE Alu 1 300 -9 15641 158 69 43 chr6 28145892 28146534 -154268708 - MER109 Unknown Unknown -3546 4294966182 150 2420 78 0 3 chr6 28146534 28146827 -154268415 + AluSc SINE Alu 1 292 -17 15641 158 69 43 chr6 28146827 28146982 -154268260 - MER109 Unknown Unknown -2281 151 1 641 297 5 14 chr6 28148645 28148857 -154266385 + MIR SINE MIR 40 249 -13 209 135 19 0 chr6 28148924 28148976 -154266266 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1289 246 133 21 chr6 28148983 28149343 -154265899 - MLT2B1 LTR ERVL -45 475 58 1859 140 0 31 chr6 28149343 28149635 -154265607 - AluJo SINE Alu -29 283 1 1289 246 133 21 chr6 28149635 28149701 -154265541 - MLT2B1 LTR ERVL -462 58 1 345 269 39 0 chr6 28149701 28149805 -154265437 - L2 LINE L2 -32 3240 3133 198 299 42 90 chr6 28150107 28150251 -154264991 + L2 LINE L2 2915 3051 -221 1195 176 18 40 chr6 28150310 28150537 -154264705 - AluJb SINE Alu -90 222 1 1513 179 3 48 chr6 28150572 28150885 -154264357 + AluJo SINE Alu 1 299 -13 2164 89 7 0 chr6 28150898 28151200 -154264042 + AluSx SINE Alu 1 304 0 2480 93 0 0 chr6 28151822 28152134 -154263108 + AluSx SINE Alu 1 312 0 679 0 0 0 chr6 28153151 28153225 -154262017 - tRNA-Thr-ACT tRNA tRNA -3 74 1 240 35 0 0 chr6 28153971 28153979 -154261263 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 35 0 0 chr6 28153979 28154008 -154261234 + (TG)n Simple_repeat Simple_repeat 2 30 0 2612 43 0 3 chr6 28154431 28154733 -154260509 + AluY SINE Alu 1 301 -10 1483 158 78 14 chr6 28155290 28155574 -154259668 + MLT2C1 LTR ERVL 10 311 -86 2142 73 59 7 chr6 28155711 28155998 -154259244 - AluSq SINE Alu -11 302 1 1836 60 5 0 chr6 28156189 28156406 -154258836 + AluSp SINE Alu 85 302 -11 505 212 29 51 chr6 28156407 28156544 -154258698 + Charlie4 DNA MER1_type 1811 1944 -17 654 14 0 0 chr6 28157732 28157805 -154257437 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 686 0 0 0 chr6 28158288 28158362 -154256880 + tRNA-Val-GTG tRNA tRNA 1 74 -2 2057 113 44 3 chr6 28159512 28159805 -154255437 - AluSx SINE Alu -7 305 1 258 105 0 0 chr6 28159869 28159907 -154255335 + (A)n Simple_repeat Simple_repeat 1 38 0 2374 105 3 0 chr6 28160563 28160867 -154254375 - AluSx SINE Alu -6 306 2 2105 91 51 0 chr6 28161290 28161565 -154253677 - AluSg SINE Alu -21 289 1 1588 151 26 4 chr6 28161596 28161868 -154253374 - MLT1B LTR MaLR 0 390 113 1525 159 28 40 chr6 28162437 28162764 -154252478 - L1MC2 LINE L1 -10 6334 6012 887 83 0 0 chr6 28163656 28163765 -154251477 - AluSg/x SINE Alu -12 297 189 2056 75 0 30 chr6 28163765 28164030 -154251212 + AluSx SINE Alu 53 309 -3 981 307 58 43 chr6 28164442 28165369 -154249873 - L1ME3A LINE L1 -96 6025 5083 1373 254 78 80 chr6 28166489 28167430 -154247812 - L1ME3A LINE L1 -1055 5091 4153 2380 92 3 0 chr6 28167464 28167770 -154247472 - AluSx SINE Alu -5 307 1 1893 105 37 54 chr6 28167781 28168075 -154247167 - AluSx SINE Alu -21 291 3 181 247 240 19 chr6 28168076 28168230 -154247012 - L2 LINE L2 -563 2751 2564 188 333 83 0 chr6 28168264 28168372 -154246870 + MIR SINE MIR 90 206 -56 2361 90 0 10 chr6 28168791 28169101 -154246141 + AluSx SINE Alu 1 307 -5 261 299 34 8 chr6 28169199 28169316 -154245926 - L2 LINE L2 -219 3053 2934 2284 87 6 13 chr6 28169648 28169960 -154245282 - AluSq SINE Alu -3 310 1 3348 113 84 6 chr6 28170096 28170610 -154244632 - MER41C LTR ERV1 0 554 1 619 71 0 12 chr6 28170637 28170721 -154244521 + AluSg/x SINE Alu 215 297 -12 1201 224 75 35 chr6 28171122 28171414 -154243828 - Charlie4a DNA MER1_type -1456 505 191 2325 75 20 0 chr6 28171414 28171708 -154243534 - AluY SINE Alu -11 300 1 1201 224 75 35 chr6 28171708 28171813 -154243429 - Charlie4a DNA MER1_type -1770 191 92 441 266 71 7 chr6 28171812 28171966 -154243276 - MER112 DNA MER1_type -96 164 1 * 1192 163 92 0 chr6 28172328 28172567 -154242675 + Tigger7 DNA MER2_type 7 267 -2220 555 129 75 11 chr6 28172565 28172658 -154242584 + Tigger7 DNA MER2_type 2389 2487 0 * 398 200 0 0 chr6 28172710 28172780 -154242462 - tRNA-Lys-AAA tRNA tRNA -1 75 6 584 81 11 0 chr6 28173000 28173087 -154242155 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 639 14 0 0 chr6 28173737 28173809 -154241433 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 668 0 0 0 chr6 28174356 28174430 -154240812 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 258 304 43 22 chr6 28175178 28175270 -154239972 - MER5A DNA MER1_type -40 149 56 203 295 57 38 chr6 28175182 28175287 -154239955 + MER5A DNA MER1_type 55 161 -28 * 643 0 0 0 chr6 28175504 28175576 -154239666 + tRNA-Pro-CCT tRNA tRNA 1 72 -3 252 77 0 0 chr6 28175720 28175759 -154239483 + (T)n Simple_repeat Simple_repeat 1 39 0 665 0 0 0 chr6 28176780 28176854 -154238388 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 223 264 0 0 chr6 28177363 28177416 -154237826 + MER5B DNA MER1_type 17 69 -109 941 266 169 3 chr6 28177630 28178002 -154237240 - L2 LINE L2 -432 2882 2449 664 157 45 15 chr6 28178317 28178451 -154236791 - FLAM_C SINE Alu -1 142 5 1967 154 0 0 chr6 28178608 28178906 -154236336 + AluJb SINE Alu 1 298 -14 435 139 28 0 chr6 28179187 28179259 -154235983 + U3 snRNA snRNA 1 74 -143 1934 125 0 77 chr6 28179375 28179688 -154235554 + AluJo SINE Alu 1 289 -23 2655 23 7 3 chr6 28179695 28179999 -154235243 + AluY SINE Alu 1 305 -6 2310 108 7 0 chr6 28180096 28180393 -154234849 + AluSq SINE Alu 1 299 -14 2030 130 32 0 chr6 28180400 28180685 -154234557 + AluSx SINE Alu 2 295 -17 259 277 64 0 chr6 28180787 28180881 -154234361 + L1MC5 LINE L1 7269 7368 -593 426 275 72 72 chr6 28180938 28181371 -154233871 + L1MC4 LINE L1 7610 8042 0 1206 146 150 5 chr6 28181704 28181924 -154233318 + AluSq SINE Alu 1 252 -61 1948 234 4 37 chr6 28181924 28182382 -154232860 - LTR2 LTR ERV1 0 449 7 228 163 0 0 chr6 28182419 28182462 -154232780 + A-rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr6 28183126 28183148 -154232094 + AT_rich Low_complexity Low_complexity 1 22 0 1258 162 27 18 chr6 28183422 28183644 -154231598 + THE1C LTR MaLR 1 224 -151 1288 132 0 64 chr6 28184024 28184114 -154231128 - AluJb SINE Alu -17 295 201 2332 97 102 0 chr6 28184114 28184456 -154230786 + MER51B LTR ERV1 1 377 0 1288 132 0 64 chr6 28184456 28184584 -154230658 - AluJb SINE Alu -111 201 91 2279 83 0 10 chr6 28184584 28184874 -154230368 + AluSg SINE Alu 9 295 -15 818 136 8 205 chr6 28184912 28185170 -154230072 + AluJo SINE Alu 87 293 -19 186 216 0 0 chr6 28186009 28186046 -154229196 + L2 LINE L2 3236 3272 0 2309 40 29 0 chr6 28186106 28186415 -154228827 - AluY SINE Alu 0 319 3 748 202 5 94 chr6 28186594 28186797 -154228445 - MER20 DNA MER1_type -18 201 17 1663 144 3 30 chr6 28186847 28187146 -154228096 - AluJo SINE Alu -21 291 1 829 199 110 16 chr6 28187241 28187487 -154227755 + LTR37B LTR ERV1 199 467 -1 1974 121 9 19 chr6 28187823 28188138 -154227104 - AluSx SINE Alu 0 312 1 1955 127 3 33 chr6 28188365 28188672 -154226570 + AluSx SINE Alu 1 298 -14 501 22 0 198 chr6 28189092 28189183 -154226059 + tRNA-Tyr-TAC tRNA tRNA 1 73 -3 308 285 200 8 chr6 28189714 28189844 -154225398 + MER5B DNA MER1_type 24 178 0 2149 108 0 0 chr6 28190393 28190681 -154224561 - AluSx SINE Alu -24 288 1 252 0 0 0 chr6 28190683 28190711 -154224531 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr6 28190928 28190948 -154224294 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2289 86 6 16 chr6 28190987 28191300 -154223942 - AluSq SINE Alu -3 310 1 2136 100 36 0 chr6 28191443 28191744 -154223498 + AluSx SINE Alu 1 312 0 612 27 0 0 chr6 28192097 28192170 -154223072 - tRNA-Ala-GCA tRNA tRNA -3 73 1 2374 89 3 6 chr6 28192660 28192973 -154222269 + AluSx SINE Alu 1 312 0 187 178 0 67 chr6 28193210 28193255 -154221987 - L2 LINE L2 -22 3250 3209 2029 135 7 0 chr6 28193670 28193967 -154221275 + AluSx SINE Alu 1 299 -13 1056 150 35 55 chr6 28194355 28194555 -154220687 + AluJb SINE Alu 104 299 -13 254 108 0 0 chr6 28194591 28194628 -154220614 + LTR50 LTR ERVL 6 42 -753 1409 205 86 18 chr6 28194628 28194963 -154220279 + MLT1A2 LTR MaLR 1 358 -16 1112 206 7 136 chr6 28194963 28195302 -154219940 + MLT1A1 LTR MaLR 1 279 -86 1783 126 35 0 chr6 28195302 28195556 -154219686 - AluSx SINE Alu -20 292 30 1112 206 7 136 chr6 28195556 28195628 -154219614 + MLT1A1 LTR MaLR 279 359 -6 503 33 0 187 chr6 28195803 28195894 -154219348 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 384 271 181 16 chr6 28195989 28196177 -154219065 + LTR50 LTR ERVL 42 260 -535 499 33 0 178 chr6 28197337 28197427 -154217815 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 1418 155 66 56 chr6 28197993 28198324 -154216918 - AluJb SINE Alu 0 312 1 5480 197 14 37 chr6 28198375 28199350 -154215892 - L1PA16 LINE L1 -1 6165 5169 1945 175 0 0 chr6 28199350 28199658 -154215584 - AluSx SINE Alu -4 308 1 5480 197 14 37 chr6 28199658 28200201 -154215041 - L1PA16 LINE L1 -997 5169 4615 2278 115 0 0 chr6 28200201 28200505 -154214737 - AluSx SINE Alu -8 304 1 5480 197 14 37 chr6 28200505 28200989 -154214253 - L1PA16 LINE L1 -1551 4615 4176 2252 109 7 0 chr6 28200989 28201292 -154213950 - AluSp SINE Alu -8 305 1 5480 197 14 37 chr6 28201292 28201349 -154213893 - L1PA16 LINE L1 -1990 4176 4119 230 228 89 25 chr6 28201848 28201927 -154213315 + L2 LINE L2 1548 1631 -1683 4430 186 87 9 chr6 28201961 28202870 -154212372 + MER45B DNA AcHobo 1 980 -60 613 187 28 0 chr6 28202903 28203010 -154212232 - FLAM_A SINE Alu -32 110 1 1749 169 30 7 chr6 28203020 28203322 -154211920 - AluJb SINE Alu -3 309 1 1992 261 89 22 chr6 28203327 28204151 -154211091 + L2 LINE L2 1827 2705 -609 207 0 0 0 chr6 28204168 28204191 -154211051 + (GGGTG)n Simple_repeat Simple_repeat 5 27 0 856 314 67 20 chr6 28204197 28204598 -154210644 - LTR16C LTR ERVL -38 453 34 2075 116 22 0 chr6 28204703 28204980 -154210262 + AluSx SINE Alu 1 283 -29 227 31 31 0 chr6 28204995 28205027 -154210215 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1005 226 30 162 chr6 28255855 28256216 -154159026 + MLT1E2 LTR MaLR 205 623 -3 2382 106 3 0 chr6 28256565 28256877 -154158365 - AluSp SINE Alu 0 313 1 809 140 0 0 chr6 28257079 28257193 -154158049 + AluSq/x SINE Alu 1 114 -199 2017 118 0 0 chr6 28257390 28257661 -154157581 + AluSx SINE Alu 1 271 -41 358 357 0 28 chr6 28258896 28259078 -154156164 + (CATA)n Simple_repeat Simple_repeat 4 180 0 * 387 350 18 0 chr6 28258953 28259116 -154156126 + (CATG)n Simple_repeat Simple_repeat 1 166 0 237 224 0 0 chr6 28259119 28259177 -154156065 + (CATA)n Simple_repeat Simple_repeat 4 61 0 194 240 27 0 chr6 28259238 28259313 -154155929 + (TATG)n Simple_repeat Simple_repeat 2 78 0 330 290 10 24 chr6 28259430 28259645 -154155597 + (TATG)n Simple_repeat Simple_repeat 1 211 0 * 365 339 28 11 chr6 28259571 28259748 -154155494 + (CATG)n Simple_repeat Simple_repeat 1 180 0 444 279 0 0 chr6 28259764 28259925 -154155317 + (CATA)n Simple_repeat Simple_repeat 2 162 0 270 265 13 13 chr6 28259959 28260110 -154155132 + (CATA)n Simple_repeat Simple_repeat 3 153 0 354 280 8 33 chr6 28260176 28260421 -154154821 + (CATA)n Simple_repeat Simple_repeat 1 239 0 3415 87 91 0 chr6 28260421 28260586 -154154656 - LTR66 LTR ERVL 0 610 461 504 48 0 0 chr6 28260586 28260649 -154154593 + (TA)n Simple_repeat Simple_repeat 2 64 0 3415 87 91 0 chr6 28260649 28260979 -154154263 - LTR66 LTR ERVL -149 461 70 1491 150 86 11 chr6 28260983 28261263 -154153979 + MSTA LTR MaLR 128 428 0 657 161 25 0 chr6 28262756 28262874 -154152368 - AluSc SINE Alu -3 306 186 306 275 148 82 chr6 28265574 28265974 -154149268 + L1ME4a LINE L1 5696 6121 0 2438 92 3 0 chr6 28265992 28266296 -154148946 - AluSp SINE Alu -8 305 1 468 259 35 7 chr6 28266392 28266535 -154148707 + L1M4 LINE L1 3627 3773 -2373 1291 201 36 3 chr6 28266548 28266857 -154148385 + L1M4 LINE L1 4071 4389 -1757 2769 126 10 43 chr6 28266874 28267366 -154147876 + L1MC1 LINE L1 5858 6333 0 2428 248 29 54 chr6 28267366 28267853 -154147389 + L1M4 LINE L1 3785 4283 -1863 2297 103 3 0 chr6 28267853 28268154 -154147088 + AluSp SINE Alu 1 302 -11 2428 248 29 54 chr6 28268154 28268648 -154146594 + L1M4 LINE L1 4283 4738 -1408 1848 114 53 0 chr6 28268648 28268911 -154146331 + AluSg SINE Alu 1 277 -33 2428 248 29 54 chr6 28268911 28269016 -154146226 + L1M4 LINE L1 4738 4844 -1302 2433 85 0 7 chr6 28269397 28269704 -154145538 + AluSg SINE Alu 1 305 -5 872 209 11 74 chr6 28270249 28270306 -154144936 + L1M4 LINE L1 4845 4904 -1242 1850 173 3 3 chr6 28270306 28270612 -154144630 - AluJo SINE Alu -2 310 5 872 209 11 74 chr6 28270612 28270837 -154144405 + L1M4 LINE L1 4904 5109 -1037 3767 231 52 9 chr6 28270849 28271238 -154144004 - L1M4 LINE L1 -788 5358 4987 2671 136 35 11 chr6 28271238 28271701 -154143541 + MER101 LTR ERV1 1 474 0 3767 231 52 9 chr6 28271701 28272471 -154142771 - L1M4 LINE L1 -1159 4987 4150 1059 157 42 46 chr6 28272472 28272733 -154142509 - L1MC3 LINE L1 -92 7693 7434 319 24 24 0 chr6 28272753 28272794 -154142448 - tRNA-Gln-CAA tRNA tRNA -26 49 8 296 244 25 17 chr6 28272806 28272925 -154142317 - L1M4 LINE L1 -1005 5141 5022 253 270 10 20 chr6 28272952 28273052 -154142190 - LTR65 LTR ERV1 -6 663 565 1617 155 25 22 chr6 28273359 28273637 -154141605 + AluJb SINE Alu 1 279 -33 1048 64 40 6 chr6 28273638 28273811 -154141431 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 25 83 0 0 chr6 28274079 28274139 -154141103 + AT_rich Low_complexity Low_complexity 1 60 0 2372 93 3 3 chr6 28274146 28274457 -154140785 - AluSp SINE Alu -1 312 2 5555 143 16 10 chr6 28274458 28275479 -154139763 - L1MC2 LINE L1 -13 6331 5305 832 66 9 0 chr6 28275490 28275596 -154139646 - AluYb8 SINE Alu -12 306 200 514 276 0 0 chr6 28275704 28275820 -154139422 - HAL1 LINE L1 -2191 316 201 23 33 0 0 chr6 28275825 28275855 -154139387 + AT_rich Low_complexity Low_complexity 1 30 0 1156 222 4 4 chr6 28275886 28276125 -154139117 - MER8 DNA MER2_type 0 239 1 1487 145 107 12 chr6 28276667 28277005 -154138237 - L1MD1 LINE L1 -8 6234 5865 2266 100 7 0 chr6 28277095 28277395 -154137847 - AluSp SINE Alu -11 302 1 2321 85 7 0 chr6 28277720 28278013 -154137229 - AluSp SINE Alu -18 295 1 1419 185 36 25 chr6 28278667 28278983 -154136259 + AluJb SINE Alu 1 319 0 940 113 7 0 chr6 28279096 28279238 -154136004 + MER4E LTR ERV1 1 143 -623 1664 158 67 0 chr6 28279617 28279901 -154135341 - AluJo SINE Alu -9 303 1 361 234 51 80 chr6 28279974 28280149 -154135093 - L1M4 LINE L1 -2859 3287 3118 751 63 0 0 chr6 28280163 28280258 -154134984 - AluSc SINE Alu -214 95 1 460 195 26 10 chr6 28286086 28286210 -154129032 + MIR SINE MIR 66 189 -65 1209 254 84 86 chr6 28286601 28287219 -154128023 + L2 LINE L2 1274 1890 -1424 1075 311 121 9 chr6 28287241 28287672 -154127570 + L2 LINE L2 2811 3289 -24 4691 158 26 66 chr6 28288419 28289429 -154125813 + LTR5 LTR ERVK 1 969 0 891 247 53 35 chr6 28289718 28290001 -154125241 + L2 LINE L2 2375 2662 -652 * 1165 304 87 28 chr6 28289980 28290453 -154124789 + L2 LINE L2 2813 3313 0 267 31 0 0 chr6 28291711 28291743 -154123499 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1649 83 32 24 chr6 28291743 28291996 -154123246 - L1PA10 LINE L1 -13 6155 5901 616 179 24 0 chr6 28292374 28292497 -154122745 + Tigger7 DNA MER2_type 2365 2490 -1 27 0 0 0 chr6 28292619 28292646 -154122596 + AT_rich Low_complexity Low_complexity 1 27 0 2245 85 3 0 chr6 28292677 28292984 -154122258 + AluSp SINE Alu 1 308 0 298 336 34 4 chr6 28293098 28293360 -154121882 + L1P LINE L1 2110 2379 -3767 490 335 105 27 chr6 28293397 28293986 -154121256 + L1MC4a LINE L1 2448 3093 -3053 351 148 0 18 chr6 28293989 28294057 -154121185 + FLAM_A SINE Alu 64 117 -16 766 177 0 0 chr6 28294065 28294178 -154121064 + FLAM_C SINE Alu 6 118 -25 798 318 63 32 chr6 28294199 28294766 -154120476 + L1MC4a LINE L1 3106 3690 -2456 1013 157 6 29 chr6 28294785 28294957 -154120285 - FRAM SINE Alu -16 160 1 774 276 92 50 chr6 28294969 28295796 -154119446 + L1MC4a LINE L1 3743 4604 -1542 752 199 129 11 chr6 28295823 28296009 -154119233 + MER58A DNA MER1_type 2 209 -15 301 344 31 14 chr6 28296179 28296473 -154118769 + L1MC4a LINE L1 4796 5094 -1052 315 0 0 0 chr6 28296528 28296544 -154118698 + (TG)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chr6 28296544 28296579 -154118663 + (TG)n Simple_repeat Simple_repeat 2 36 0 2371 88 3 0 chr6 28296598 28296895 -154118347 - AluSp SINE Alu -10 303 6 560 177 78 35 chr6 28296918 28297156 -154118086 + L1MC4a LINE L1 5189 5428 -743 3747 220 53 41 chr6 28297167 28298156 -154117086 + L1MC/D LINE L1 3966 4942 -1204 2323 141 38 34 chr6 28298156 28298630 -154116612 + L1MA8 LINE L1 5814 6289 -2 3747 220 53 41 chr6 28298630 28298744 -154116498 + L1MC/D LINE L1 4942 5053 -1093 1754 161 3 7 chr6 28298744 28299029 -154116213 - AluSx SINE Alu -25 287 4 3747 220 53 41 chr6 28299029 28299263 -154115979 + L1MC/D LINE L1 5053 5320 -826 687 97 0 0 chr6 28299305 28299398 -154115844 + AluS SINE Alu 1 93 -219 1076 131 10 116 chr6 28299534 28299821 -154115421 + L1MC1 LINE L1 6096 6342 0 572 233 8 0 chr6 28299816 28299949 -154115293 + L1MC/D LINE L1 5423 5556 -2252 * 5361 222 99 54 chr6 28299954 28302150 -154113092 + L1MC4a LINE L1 5404 7697 -111 302 44 22 22 chr6 28302162 28302207 -154113035 + L1MC4 LINE L1 7805 7849 -193 419 202 65 48 chr6 28302208 28302332 -154112910 - MER105 DNA DNA -1 203 78 702 130 15 123 chr6 28302366 28302427 -154112815 + L1MC4 LINE L1 7863 7929 -113 1660 194 83 21 chr6 28302427 28302799 -154112443 + MSTD LTR MaLR 1 395 -1 702 130 15 123 chr6 28302799 28302952 -154112290 + L1MC4 LINE L1 7929 8042 0 364 298 187 15 chr6 28303017 28303215 -154112027 + MIR SINE MIR 31 262 0 941 257 146 28 chr6 28303768 28303784 -154111458 + L2 LINE L2 2700 2713 -600 2359 74 0 10 chr6 28303784 28304083 -154111159 + AluY SINE Alu 1 296 -15 941 257 146 28 chr6 28304083 28304498 -154110744 + L2 LINE L2 2713 3259 -54 231 368 9 19 chr6 28304611 28304717 -154110525 + L2 LINE L2 2980 3084 -188 652 295 30 15 chr6 28304915 28305115 -154110127 - MIR SINE MIR -57 205 3 721 258 140 0 chr6 28307480 28307701 -154107541 - MIR SINE MIR -3 259 8 303 300 49 114 chr6 28307874 28307924 -154107318 - L2 LINE L2 -5 3267 3215 2156 101 37 0 chr6 28307924 28308220 -154107022 + AluSp SINE Alu 1 307 -6 303 300 49 114 chr6 28308220 28308476 -154106766 - L2 LINE L2 -57 3215 2981 564 180 0 10 chr6 28308746 28308846 -154106396 + FLAM_A SINE Alu 2 100 -42 695 134 81 70 chr6 28309064 28309250 -154105992 + MER53 DNA DNA 1 188 -1 2244 120 3 0 chr6 28310379 28310688 -154104554 - AluSx SINE Alu -2 310 1 2189 113 0 0 chr6 28310688 28310978 -154104264 - AluSx SINE Alu -21 291 1 235 346 0 19 chr6 28311156 28311263 -154103979 + MIR SINE MIR 152 256 -6 1729 171 3 46 chr6 28311271 28311576 -154103666 + AluJb SINE Alu 6 297 -15 1776 165 20 3 chr6 28311586 28311883 -154103359 + MER1A DNA MER1_type 1 302 -227 1457 115 21 8 chr6 28311976 28312210 -154103032 + MER1A DNA MER1_type 297 533 0 243 231 10 58 chr6 28312299 28312403 -154102839 + T-rich Low_complexity Low_complexity 4 102 0 1719 170 87 3 chr6 28313244 28313555 -154101687 - MER1B DNA MER1_type 0 337 1 1506 211 79 67 chr6 28313569 28314063 -154101179 - MLT1D LTR MaLR 0 505 6 475 179 104 0 chr6 28314074 28314180 -154101062 + MER99 DNA DNA 709 825 -3 2617 105 11 5 chr6 28314484 28314857 -154100385 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr6 28314939 28314965 -154100277 + (A)n Simple_repeat Simple_repeat 1 26 0 272 289 79 0 chr6 28315110 28315224 -154100018 + L1ME3A LINE L1 5510 5632 -538 2074 198 39 108 chr6 28315224 28315552 -154099690 - LTR8 LTR ERV1 0 691 342 1584 99 38 0 chr6 28315552 28315763 -154099479 - AluSg/x SINE Alu -9 303 85 243 0 0 0 chr6 28315769 28315796 -154099446 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2074 198 39 108 chr6 28315796 28316202 -154099040 - LTR8 LTR ERV1 -354 337 1 446 332 25 21 chr6 28316224 28316507 -154098735 + L1ME3A LINE L1 5657 5940 -230 225 154 0 0 chr6 28316504 28316543 -154098699 + (CATA)n Simple_repeat Simple_repeat 4 42 0 * 1070 172 25 17 chr6 28316545 28316906 -154098336 + MLT2A2 LTR ERVL 190 453 0 254 270 17 23 chr6 28316937 28317111 -154098131 + (CATA)n Simple_repeat Simple_repeat 3 175 0 195 229 24 24 chr6 28317149 28317232 -154098010 + (CATA)n Simple_repeat Simple_repeat 1 83 0 235 303 17 0 chr6 28317255 28317430 -154097812 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 243 173 0 0 chr6 28317395 28317447 -154097795 + (CATG)n Simple_repeat Simple_repeat 1 52 0 331 301 17 16 chr6 28317504 28317756 -154097486 + (CATATA)n Simple_repeat Simple_repeat 1 252 0 329 267 17 12 chr6 28317756 28317928 -154097314 + (CATA)n Simple_repeat Simple_repeat 4 176 0 289 301 78 0 chr6 28319459 28319562 -154095680 - MIR SINE MIR -108 154 44 185 94 31 0 chr6 28319827 28319859 -154095383 + (CA)n Simple_repeat Simple_repeat 2 34 0 32 26 0 0 chr6 28319862 28319901 -154095341 + AT_rich Low_complexity Low_complexity 1 39 0 530 110 0 0 chr6 28320194 28320267 -154094975 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2067 273 81 37 chr6 28320935 28322843 -154092399 + L1MDa LINE L1 1005 3034 -3506 224 265 0 0 chr6 28323125 28323174 -154092068 + L2 LINE L2 3220 3268 -4 1571 168 32 0 chr6 28323309 28323559 -154091683 + AluSx SINE Alu 23 280 -32 342 0 0 0 chr6 28323559 28323597 -154091645 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2191 125 0 0 chr6 28323607 28323912 -154091330 + AluSx SINE Alu 1 305 -7 220 344 32 34 chr6 28323990 28324144 -154091098 + MIR SINE MIR 3 149 -77 272 265 0 0 chr6 28324777 28324845 -154090397 + tRNA-Met-e tRNA tRNA 6 73 -2 679 60 30 0 chr6 28324967 28325067 -154090175 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 344 321 47 54 chr6 28325254 28325550 -154089692 - L2 LINE L2 -1 3312 3019 235 301 41 0 chr6 28326447 28326520 -154088722 - MIR SINE MIR -108 154 79 21 0 0 0 chr6 28327434 28327455 -154087787 + AT_rich Low_complexity Low_complexity 1 21 0 291 301 78 0 chr6 28327675 28327778 -154087464 - MIR SINE MIR -108 154 44 24 32 0 0 chr6 28327778 28327809 -154087433 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr6 28328448 28328482 -154086760 + (CA)n Simple_repeat Simple_repeat 1 34 0 194 0 39 0 chr6 28328935 28328961 -154086281 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chr6 28328966 28329005 -154086237 + AT_rich Low_complexity Low_complexity 1 39 0 541 96 0 0 chr6 28329300 28329373 -154085869 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2158 256 78 51 chr6 28330041 28331352 -154083890 + L1MDa LINE L1 1005 2350 -4190 656 268 51 38 chr6 28331371 28331900 -154083342 + L1MDa LINE L1 2472 2968 -3572 246 284 78 29 chr6 28332216 28332318 -154082924 + L2 LINE L2 3162 3268 -4 1692 180 28 0 chr6 28332439 28332722 -154082520 + AluJb SINE Alu 1 291 -21 2141 123 0 0 chr6 28332734 28333034 -154082208 + AluSx SINE Alu 1 300 -12 282 290 63 35 chr6 28333117 28333268 -154081974 + MIR3 SINE MIR 3 149 -77 405 0 0 0 chr6 28333694 28333739 -154081503 + (CA)n Simple_repeat Simple_repeat 2 46 0 521 110 0 0 chr6 28334075 28334148 -154081094 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 248 152 65 0 chr6 28336161 28336207 -154079035 + MER66B LTR ERV1 297 345 -141 246 147 147 15 chr6 28336808 28336876 -154078366 + L2 LINE L2 3236 3312 -1 293 194 48 0 chr6 28337507 28337569 -154077673 - tRNA-His-CAC tRNA tRNA -10 65 1 300 318 173 23 chr6 28337954 28338168 -154077074 - L2 LINE L2 -103 3210 2965 23 0 0 0 chr6 28339476 28339499 -154075743 + AT_rich Low_complexity Low_complexity 1 23 0 14218 161 41 34 chr6 28339921 28344288 -154070954 + L1MA8 LINE L1 3314 7707 -3 352 263 0 0 chr6 28344346 28344422 -154070820 + tRNA-Val-GTT tRNA tRNA 1 76 0 291 158 0 0 chr6 28344874 28344931 -154070311 + tRNA-Ala-GCA tRNA tRNA 4 60 -16 1128 149 90 0 chr6 28345454 28345709 -154069533 + L1MB4 LINE L1 5903 6180 0 203 157 20 0 chr6 28346612 28346663 -154068579 + (TA)n Simple_repeat Simple_repeat 2 53 0 504 304 33 0 chr6 28346805 28347075 -154068167 + L1M4 LINE L1 2380 2658 -3488 246 297 16 0 chr6 28347314 28347378 -154067864 + L2 LINE L2 3204 3268 -4 444 135 14 0 chr6 28348306 28348380 -154066862 + tRNA-Met-e tRNA tRNA 1 75 0 252 244 165 35 chr6 28348698 28348813 -154066429 - L2 LINE L2 -1 3312 3183 350 0 44 0 chr6 28349490 28349535 -154065707 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr6 28349651 28349671 -154065571 + (T)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr6 28351336 28351365 -154063877 + (CA)n Simple_repeat Simple_repeat 1 29 0 354 23 0 0 chr6 28351817 28351860 -154063382 + (CA)n Simple_repeat Simple_repeat 2 44 0 521 110 0 0 chr6 28352197 28352270 -154062972 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 2075 266 81 43 chr6 28352946 28354869 -154060373 + L1MDa LINE L1 1005 3047 -3493 263 289 82 10 chr6 28355117 28355214 -154060028 + L2 LINE L2 3168 3271 -1 1568 163 0 4 chr6 28355332 28355583 -154059659 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28355606 28355677 -154059565 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2070 97 41 17 chr6 28355692 28355982 -154059260 + AluSx SINE Alu 1 297 -15 198 0 0 0 chr6 28356179 28356201 -154059041 + (A)n Simple_repeat Simple_repeat 1 22 0 1888 120 0 13 chr6 28356207 28356506 -154058736 + AluY SINE Alu 1 295 -16 729 303 28 52 chr6 28356840 28357184 -154058058 + HAL1 LINE L1 461 796 -1711 1927 132 0 17 chr6 28357184 28357505 -154057737 - AluSx SINE Alu 0 316 1 729 303 28 52 chr6 28357505 28357581 -154057661 + HAL1 LINE L1 796 872 -1635 310 226 137 11 chr6 28357675 28357865 -154057377 + HAL1 LINE L1 1050 1263 -1244 1568 163 0 4 chr6 28358006 28358257 -154056985 + AluSx SINE Alu 1 250 -62 515 56 14 0 chr6 28358280 28358351 -154056891 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 2043 100 41 17 chr6 28358366 28358656 -154056586 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr6 28358853 28358876 -154056366 + (A)n Simple_repeat Simple_repeat 1 23 0 2320 66 0 10 chr6 28358881 28359186 -154056056 + AluY SINE Alu 1 302 -9 259 265 0 0 chr6 28359871 28359939 -154055303 + tRNA-Met-e tRNA tRNA 6 73 -2 826 143 12 0 chr6 28360070 28360231 -154055011 + CT-rich Low_complexity Low_complexity 2 164 0 277 292 57 7 chr6 28361597 28361714 -154053528 - MIR SINE MIR -61 147 32 378 0 0 0 chr6 28362357 28362399 -154052843 + (CA)n Simple_repeat Simple_repeat 2 43 0 430 164 0 0 chr6 28363157 28363230 -154052012 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 1976 255 121 42 chr6 28363810 28365301 -154049941 + L1ME LINE L1 783 2421 -3985 2099 122 0 3 chr6 28365301 28365596 -154049646 + AluSq SINE Alu 1 294 -19 1976 255 121 42 chr6 28365596 28366119 -154049123 + L1ME LINE L1 2421 2902 -3504 258 294 0 0 chr6 28366382 28366450 -154048792 + L2 LINE L2 3204 3271 -1 275 286 0 0 chr6 28367395 28367458 -154047784 + tRNA-Met-e tRNA tRNA 11 73 -2 292 353 25 47 chr6 28367804 28368039 -154047203 - L2 LINE L2 0 3313 3084 687 13 0 0 chr6 28370479 28370554 -154044688 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 186 0 0 chr6 28371962 28372005 -154043237 - tRNA-His-CAC tRNA tRNA -23 52 10 1188 101 10 10 chr6 28372022 28372220 -154043022 + LTR1 LTR ERV1 54 251 -534 181 297 135 27 chr6 28372735 28372809 -154042433 + MIR SINE MIR 60 141 -67 232 100 0 75 chr6 28372820 28372860 -154042382 + Charlie7 DNA MER1_type 1627 1663 -949 2659 42 0 6 chr6 28373168 28373481 -154041761 + AluY SINE Alu 1 311 0 267 318 45 26 chr6 28373564 28373718 -154041524 + MER110 LTR ERV1 320 476 -15 664 376 55 16 chr6 28374832 28375343 -154039899 + ERVL LTR ERVL 2547 3077 -2687 3828 234 68 70 chr6 28375356 28377055 -154038187 + L1ME LINE L1 4002 5690 -732 485 151 0 0 chr6 28377529 28377602 -154037640 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 8477 9 0 0 chr6 28379823 28381075 -154034167 - L1PA2 LINE L1 -2 6153 4902 659 40 0 0 chr6 28381153 28381228 -154034014 - tRNA-Ile-ATT tRNA tRNA -2 75 1 248 139 0 0 chr6 28382629 28382665 -154032577 - tRNA-His-CAC tRNA tRNA -23 52 17 1239 101 10 10 chr6 28382689 28382887 -154032355 + LTR1 LTR ERV1 54 251 -534 237 339 107 18 chr6 28383383 28383495 -154031747 + MIR3 SINE MIR 60 181 -27 690 373 55 16 chr6 28385120 28385632 -154029610 + ERVL LTR ERVL 2546 3077 -2687 3953 243 69 55 chr6 28385645 28387317 -154027925 + L1ME LINE L1 3742 5430 -732 449 178 0 0 chr6 28387796 28387869 -154027373 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 513 110 0 0 chr6 28388508 28388581 -154026661 + tRNA-Ala-GCA tRNA tRNA 1 73 -3 207 323 0 0 chr6 28388913 28388975 -154026267 + L2 LINE L2 3168 3229 -84 1126 56 6 6 chr6 28389326 28389486 -154025756 + (TTC)n Simple_repeat Simple_repeat 2 161 0 211 218 0 18 chr6 28389742 28389797 -154025445 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 455 276 21 54 chr6 28389883 28390099 -154025143 + L1MC5 LINE L1 7258 7465 -496 1587 152 20 46 chr6 28390099 28390402 -154024840 + L1MC2 LINE L1 6050 6344 0 455 276 21 54 chr6 28390402 28390464 -154024778 + L1MC5 LINE L1 7465 7527 -434 1505 106 5 32 chr6 28391186 28391404 -154023838 + AluSx SINE Alu 40 251 -61 5859 130 30 15 chr6 28392127 28393081 -154022161 - LTR5 LTR ERVK 0 969 1 474 113 14 0 chr6 28394420 28394491 -154020751 - tRNA-Met-e tRNA tRNA -3 72 1 217 158 0 0 chr6 28394775 28394813 -154020429 + L2 LINE L2 3234 3271 -1 297 298 177 11 chr6 28394948 28395001 -154020241 - MIR SINE MIR -29 233 190 225 0 0 0 chr6 28395001 28395026 -154020216 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 297 298 177 11 chr6 28395026 28395153 -154020089 - MIR SINE MIR -72 190 23 182 250 96 77 chr6 28395394 28395498 -154019744 - L2 LINE L2 -11 3302 3197 985 157 143 30 chr6 28395603 28395833 -154019409 - MLT1B LTR MaLR 0 390 135 339 363 0 0 chr6 28396752 28396876 -154018366 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 * 385 350 18 0 chr6 28396820 28397044 -154018198 + (CATG)n Simple_repeat Simple_repeat 1 228 0 249 261 0 0 chr6 28397104 28397192 -154018050 + (TATG)n Simple_repeat Simple_repeat 4 91 0 460 291 17 23 chr6 28397260 28397435 -154017807 + (TATG)n Simple_repeat Simple_repeat 2 175 0 311 344 31 12 chr6 28397460 28397620 -154017622 + (CATG)n Simple_repeat Simple_repeat 2 164 0 189 171 0 0 chr6 28397654 28397689 -154017553 + (CATG)n Simple_repeat Simple_repeat 2 36 0 219 280 13 13 chr6 28397781 28397931 -154017311 + (CATA)n Simple_repeat Simple_repeat 3 152 0 290 239 12 43 chr6 28397996 28398159 -154017083 + (CATA)n Simple_repeat Simple_repeat 2 159 0 1193 62 41 88 chr6 28398243 28398437 -154016805 - LTR66 LTR ERVL 0 610 426 1731 141 0 0 chr6 28398568 28398839 -154016403 - AluSx SINE Alu 0 306 36 2768 82 3 0 chr6 28398839 28399192 -154016050 - LTR66 LTR ERVL -187 423 70 1583 150 86 11 chr6 28399196 28399476 -154015766 + MSTA LTR MaLR 128 428 0 342 102 20 0 chr6 28400576 28400625 -154014617 - MSTB1 LTR MaLR -3 429 380 917 170 143 30 chr6 28400976 28401206 -154014036 + MLT1B LTR MaLR 135 390 0 192 206 110 82 chr6 28401308 28401381 -154013861 + L2 LINE L2 3155 3229 -43 200 231 0 19 chr6 28401502 28401554 -154013688 + L2 LINE L2 3217 3267 -5 282 286 181 22 chr6 28401654 28401781 -154013461 + MIR SINE MIR 23 189 -73 180 0 0 0 chr6 28401781 28401801 -154013441 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 282 286 181 22 chr6 28401801 28401855 -154013387 + MIR SINE MIR 189 233 -29 231 132 0 0 chr6 28401990 28402028 -154013214 - L2 LINE L2 -1 3271 3234 474 113 14 0 chr6 28402312 28402383 -154012859 + tRNA-Met-e tRNA tRNA 1 72 -3 183 80 0 0 chr6 28403411 28403436 -154011806 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1666 77 122 28 chr6 28404385 28404632 -154010610 - AluSx SINE Alu -3 309 40 442 280 21 54 chr6 28405356 28405418 -154009824 - L1MC5 LINE L1 -434 7527 7465 1564 155 20 49 chr6 28405418 28405722 -154009520 - L1MC2 LINE L1 0 6344 6050 442 280 21 54 chr6 28405722 28405938 -154009304 - L1MC5 LINE L1 -496 7465 7258 616 87 0 19 chr6 28406339 28406442 -154008800 + (GAA)n Simple_repeat Simple_repeat 2 102 0 188 273 10 81 chr6 28406719 28406818 -154008424 - L2 LINE L2 -54 3259 3168 547 82 0 0 chr6 28407150 28407223 -154008019 - tRNA-Ala-GCA tRNA tRNA -3 73 1 1737 254 28 18 chr6 28459286 28459786 -153955456 + MLT1D LTR MaLR 1 505 0 2351 85 0 0 chr6 28459966 28460272 -153954970 - AluSx SINE Alu -6 306 1 215 210 32 16 chr6 28460674 28460736 -153954506 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 7347 13 0 0 chr6 28460802 28461640 -153953602 - L1PA2 LINE L1 0 6155 5318 29 84 0 0 chr6 28462370 28462441 -153952801 + AT_rich Low_complexity Low_complexity 1 71 0 470 322 9 57 chr6 28463151 28463362 -153951880 + MIR SINE MIR 2 202 -60 183 129 0 0 chr6 28463409 28463440 -153951802 + (GA)n Simple_repeat Simple_repeat 2 32 0 248 292 0 0 chr6 28463558 28463623 -153951619 - LTR16A1 LTR ERVL -2 455 391 1977 198 31 8 chr6 28464706 28465090 -153950152 - MSTD LTR MaLR -3 393 1 624 143 0 42 chr6 28465832 28465951 -153949291 + L1PA14 LINE L1 6044 6157 -4 47 53 0 0 chr6 28466027 28466102 -153949140 + AT_rich Low_complexity Low_complexity 1 75 0 33 25 0 0 chr6 28466311 28466351 -153948891 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr6 28467322 28467363 -153947879 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 28467434 28467454 -153947788 + (CA)n Simple_repeat Simple_repeat 2 21 0 1836 218 31 0 chr6 28467599 28467957 -153947285 + MLT2B3 LTR ERVL 133 501 -53 240 35 0 0 chr6 28467964 28467993 -153947249 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 154 0 0 chr6 28467994 28468033 -153947209 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr6 28468217 28468249 -153946993 + AT_rich Low_complexity Low_complexity 1 32 0 363 212 0 0 chr6 28468591 28468657 -153946585 - U4 snRNA snRNA -79 66 1 25 31 0 0 chr6 28468727 28468759 -153946483 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr6 28470890 28470925 -153944317 + (TG)n Simple_repeat Simple_repeat 2 36 0 658 333 108 8 chr6 28470980 28471331 -153943911 - LTR16B LTR ERVL -31 433 48 1040 216 42 93 chr6 28471454 28471839 -153943403 + MLT1A1 LTR MaLR 1 365 0 1402 184 4 50 chr6 28471943 28472334 -153942908 - L1M LINE L1 -740 5428 5067 * 4066 196 26 32 chr6 28472317 28473235 -153942007 + L1MA10 LINE L1 5420 6332 -2 25 51 0 0 chr6 28473960 28473999 -153941243 + AT_rich Low_complexity Low_complexity 1 39 0 254 273 0 0 chr6 28474105 28474160 -153941082 - MLT1I LTR MaLR 0 409 355 283 316 38 23 chr6 28474291 28474424 -153940818 - MLT1I LTR MaLR -270 139 5 252 352 66 28 chr6 28474427 28474640 -153940602 - L3 LINE CR1 -921 656 436 1642 137 30 58 chr6 28474722 28475051 -153940191 - MER44D DNA MER2_type -12 597 8 338 302 39 8 chr6 28475127 28475256 -153939986 + MIR SINE MIR 81 213 -49 229 266 43 32 chr6 28475420 28475514 -153939728 - L1MC/D LINE L1 -2011 5797 5703 22 35 0 0 chr6 28475574 28475603 -153939639 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr6 28475777 28475807 -153939435 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 28475892 28475920 -153939322 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr6 28476215 28476244 -153938998 + AT_rich Low_complexity Low_complexity 1 29 0 256 253 77 0 chr6 28476300 28476391 -153938851 + MLT1I LTR MaLR 312 409 0 1802 127 0 4 chr6 28476690 28476958 -153938284 - AluSg SINE Alu -43 267 1 453 74 0 0 chr6 28476969 28477023 -153938219 - Alu SINE Alu -258 60 7 2346 78 13 7 chr6 28477423 28477729 -153937513 - AluY SINE Alu -3 308 1 2747 26 3 0 chr6 28478498 28478805 -153936437 + L1PA2 LINE L1 5846 6153 -2 1461 180 102 0 chr6 28478992 28479248 -153935994 + AluJb SINE Alu 1 282 -30 279 0 0 0 chr6 28479248 28479279 -153935963 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1750 169 21 0 chr6 28479302 28479586 -153935656 + AluJb SINE Alu 1 290 -22 532 200 104 0 chr6 28479595 28479710 -153935532 - MER3 DNA MER1_type -61 148 22 1583 184 14 24 chr6 28479712 28479869 -153935373 - AluJb SINE Alu -21 291 137 2269 106 0 7 chr6 28479869 28480171 -153935071 - AluSg SINE Alu -10 300 1 1583 184 14 24 chr6 28480171 28480306 -153934936 - AluJb SINE Alu -175 137 2 1826 152 3 48 chr6 28480369 28480678 -153934564 + AluSx SINE Alu 1 295 -17 2194 128 3 0 chr6 28481006 28481312 -153933930 + AluSx SINE Alu 1 307 -5 182 355 76 72 chr6 28481351 28481627 -153933615 - L2 LINE L2 -3 3269 2993 1521 167 89 3 chr6 28481633 28481915 -153933327 + AluJo SINE Alu 1 306 -6 800 161 0 8 chr6 28481920 28482050 -153933192 + FLAM_C SINE Alu 7 135 -8 1740 179 0 0 chr6 28482290 28482587 -153932655 + AluJo SINE Alu 1 297 -15 1115 163 0 30 chr6 28483127 28483330 -153931912 + AluJo SINE Alu 24 220 -92 257 163 0 20 chr6 28483330 28483379 -153931863 + FLAM SINE Alu 86 133 0 486 179 84 21 chr6 28483719 28483814 -153931428 - AluSg/x SINE Alu -14 298 198 1220 118 0 0 chr6 28483815 28483976 -153931266 + AluSg/x SINE Alu 139 299 -13 2045 141 10 19 chr6 28483988 28484301 -153930941 + AluJo SINE Alu 3 312 0 230 283 111 20 chr6 28484311 28484410 -153930832 + MER5A DNA MER1_type 74 181 -8 * 269 211 0 0 chr6 28484402 28484459 -153930783 + MIR3 SINE MIR 147 203 -5 910 102 0 0 chr6 28484617 28484735 -153930507 + FLAM_C SINE Alu 1 118 -15 2029 154 3 0 chr6 28485055 28485402 -153929840 + AluSx SINE Alu 1 348 0 1486 174 43 46 chr6 28485800 28485923 -153929319 + AluJo SINE Alu 2 124 -188 1769 121 28 35 chr6 28485923 28486213 -153929029 + AluSg SINE Alu 1 288 -22 1486 174 43 46 chr6 28486213 28486394 -153928848 + AluJo SINE Alu 124 305 -7 257 268 179 18 chr6 28486457 28486569 -153928673 - L2 LINE L2 -205 3067 2938 2081 116 7 23 chr6 28486618 28486928 -153928314 - AluSx SINE Alu -7 305 1 1580 155 37 51 chr6 28487752 28487879 -153927363 + AluJo SINE Alu 1 128 -184 2011 128 10 0 chr6 28487879 28488168 -153927074 - AluSx SINE Alu -20 292 1 1580 155 37 51 chr6 28488168 28488336 -153926906 + AluJo SINE Alu 128 292 -20 279 0 0 0 chr6 28488339 28488370 -153926872 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2326 106 0 0 chr6 28488815 28489118 -153926124 - AluSg SINE Alu -7 303 1 1856 119 0 22 chr6 28489141 28489418 -153925824 - AluSx SINE Alu -3 309 39 1557 97 32 3 chr6 28489935 28490253 -153924989 + L1P4 LINE L1 5161 5485 -676 2267 95 0 7 chr6 28490254 28490550 -153924692 + AluSx SINE Alu 2 295 -17 2066 217 135 62 chr6 28490730 28490879 -153924363 + MER82 DNA MER2_type 1 138 -515 2095 114 0 34 chr6 28490879 28491177 -153924065 + AluSx SINE Alu 1 288 -24 2066 217 135 62 chr6 28491177 28491636 -153923606 + MER82 DNA MER2_type 138 653 0 247 313 30 30 chr6 28491828 28491962 -153923280 + MLT1H LTR MaLR 29 162 -387 949 150 17 56 chr6 28492305 28492485 -153922757 - FAM SINE Alu -5 44 1 416 252 50 8 chr6 28492546 28492665 -153922577 + MLT1G1 LTR MaLR 16 139 -456 2501 118 25 6 chr6 28492764 28493121 -153922121 + THE1B LTR MaLR 1 364 0 9831 101 60 42 chr6 28493122 28494667 -153920575 + THE1B-int LTR MaLR 2 1574 -6 1322 113 49 5 chr6 28494674 28494877 -153920365 + THE1B LTR MaLR 3 214 -150 799 177 15 0 chr6 28494886 28495016 -153920226 - FLAM_C SINE Alu -1 132 1 628 157 0 0 chr6 28495018 28495120 -153920122 - AluSp/q SINE Alu -2 311 210 202 130 0 65 chr6 28499745 28499791 -153915451 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 21 0 0 0 chr6 28500341 28500362 -153914880 + AT_rich Low_complexity Low_complexity 1 21 0 271 221 154 58 chr6 28500798 28500902 -153914340 + L2 LINE L2 3104 3217 -96 1710 171 66 0 chr6 28500908 28501212 -153914030 + MER2 DNA MER2_type 1 324 -21 1334 131 91 0 chr6 28501212 28501433 -153913809 + L1MA6 LINE L1 6056 6296 -4 23 33 0 0 chr6 28501449 28501479 -153913763 + AT_rich Low_complexity Low_complexity 1 30 0 1657 199 12 93 chr6 28501716 28501760 -153913482 + MLT1A2 LTR MaLR 1 47 -327 2519 58 3 13 chr6 28501760 28502068 -153913174 + AluY SINE Alu 1 305 -6 1657 199 12 93 chr6 28502068 28502361 -153912881 + MLT1A2 LTR MaLR 47 302 -72 1976 156 30 0 chr6 28502361 28502663 -153912579 - AluSx SINE Alu -1 311 1 1657 199 12 93 chr6 28502663 28502731 -153912511 + MLT1A2 LTR MaLR 302 374 0 1075 162 81 20 chr6 28502751 28502882 -153912360 + MER3 DNA MER1_type 1 149 -60 2552 53 0 0 chr6 28502882 28503181 -153912061 - AluY SINE Alu -12 299 1 1075 162 81 20 chr6 28503181 28503246 -153911996 + MER3 DNA MER1_type 149 209 0 636 215 107 51 chr6 28503744 28503943 -153911299 - MLT1F LTR MaLR 0 626 334 1436 155 38 91 chr6 28503944 28504176 -153911066 - MLT1A1 LTR MaLR 0 365 155 2181 117 0 25 chr6 28504176 28504493 -153910749 + AluSg SINE Alu 1 309 -1 1436 155 38 91 chr6 28504493 28504601 -153910641 - MLT1A1 LTR MaLR -210 155 43 541 293 13 0 chr6 28504809 28504959 -153910283 - MLT1F LTR MaLR -400 167 16 383 375 34 21 chr6 28506186 28506477 -153908765 + L2 LINE L2 1978 2272 -1042 21 0 0 0 chr6 28506882 28506903 -153908339 + AT_rich Low_complexity Low_complexity 1 21 0 256 302 94 9 chr6 28507298 28507404 -153907838 + L2 LINE L2 3158 3272 0 298 296 0 0 chr6 28509062 28509160 -153906082 + MIR SINE MIR 90 187 -75 2065 210 17 64 chr6 28509238 28509631 -153905611 + L1M2 LINE L1 2528 2938 -3910 2241 125 0 0 chr6 28509631 28509935 -153905307 + AluSg SINE Alu 1 304 -6 2065 210 17 64 chr6 28509935 28510451 -153904791 + L1M2 LINE L1 2938 3392 -3456 2696 191 47 2 chr6 28510451 28510979 -153904263 + L1PB4 LINE L1 5604 6155 -1 3398 228 61 19 chr6 28511137 28511565 -153903677 + L1MC3 LINE L1 6150 6559 -1226 2088 164 123 5 chr6 28511565 28511948 -153903294 + MSTA LTR MaLR 1 428 0 3398 228 61 19 chr6 28511948 28512450 -153902792 + L1MC3 LINE L1 6559 7119 -666 600 229 23 34 chr6 28512514 28512689 -153902553 + MER104 DNA Tc2 7 179 -1 360 219 0 0 chr6 28513504 28513586 -153901656 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 2361 61 0 10 chr6 28514080 28514376 -153900866 - AluY SINE Alu -18 293 1 588 232 7 53 chr6 28514687 28514838 -153900404 - MER20 DNA MER1_type -52 167 24 698 260 25 20 chr6 28515203 28515407 -153899835 + MER20 DNA MER1_type 8 212 -7 642 167 40 8 chr6 28515597 28515723 -153899519 + L1PA13 LINE L1 6033 6162 -1 26 30 0 0 chr6 28515789 28515822 -153899420 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr6 28516383 28516416 -153898826 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr6 28517095 28517119 -153898123 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 28517180 28517210 -153898032 + AT_rich Low_complexity Low_complexity 1 30 0 3707 44 16 0 chr6 28517690 28518118 -153897124 - L1PA3 LINE L1 0 6155 5721 7165 23 0 0 chr6 28518118 28519277 -153895965 + L1PA3 LINE L1 4563 5721 -434 432 268 0 0 chr6 28519447 28519544 -153895698 + Tigger3(Golem) DNA MER2_type 2 98 -2931 436 238 0 0 chr6 28519557 28519641 -153895601 + Tigger3(Golem) DNA MER2_type 2945 3028 -1 252 216 0 0 chr6 28519987 28520038 -153895204 + L1MC4 LINE L1 6653 6703 -1339 230 191 0 0 chr6 28520041 28520088 -153895154 + LTR66 LTR ERVL 392 438 -172 * 320 270 0 0 chr6 28520046 28520135 -153895107 + L1MC4 LINE L1 6615 6703 -1339 297 240 0 0 chr6 28520089 28520164 -153895078 + (TA)n Simple_repeat Simple_repeat 2 76 0 * 1767 132 59 0 chr6 28520164 28520437 -153894805 - AluSq SINE Alu -22 291 3 28 48 0 0 chr6 28520796 28520838 -153894404 + AT_rich Low_complexity Low_complexity 1 42 0 1321 214 50 10 chr6 28521963 28522262 -153892980 - AluJo SINE Alu -1 311 1 276 149 0 60 chr6 28523572 28523639 -153891603 + MADE1 DNA Mariner 1 63 -17 270 295 169 38 chr6 28523804 28524065 -153891177 - MLT1J LTR MaLR -210 301 7 336 243 0 162 chr6 28526137 28526310 -153888932 - L2 LINE L2 -4 3309 3165 407 78 16 0 chr6 28526822 28526886 -153888356 + (CA)n Simple_repeat Simple_repeat 1 65 0 526 283 53 33 chr6 28527189 28527433 -153887809 - LTR16A LTR ERVL -184 266 18 28 71 0 0 chr6 28528796 28528852 -153886390 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr6 28529179 28529208 -153886034 + AT_rich Low_complexity Low_complexity 1 29 0 6159 31 0 5 chr6 28529366 28530109 -153885133 - L1PA3 LINE L1 -3 6152 5414 10726 35 0 0 chr6 28530109 28531412 -153883830 + L1PA3 LINE L1 4101 5403 -743 218 331 66 22 chr6 28532033 28532169 -153883073 + L2 LINE L2 2122 2263 -1051 21 0 0 0 chr6 28532245 28532266 -153882976 + AT_rich Low_complexity Low_complexity 1 21 0 1021 144 98 90 chr6 28532950 28533206 -153882036 - Tigger2 DNA MER2_type -10 2708 2451 3797 186 35 0 chr6 28533260 28533992 -153881250 - Tigger2 DNA MER2_type -1959 759 2 1358 276 95 84 chr6 28534090 28535607 -153879635 + MER110-int LTR ERV1 1952 3590 -1057 715 264 98 8 chr6 28535814 28536068 -153879174 + MLT1D LTR MaLR 1 277 -228 381 300 0 0 chr6 28536165 28536275 -153878967 + MLT1A2 LTR MaLR 51 160 -214 918 197 11 26 chr6 28536327 28536538 -153878704 + MLT1A2 LTR MaLR 182 374 0 * 928 283 9 0 chr6 28536538 28536767 -153878475 + MLT1D LTR MaLR 275 505 0 655 216 120 0 chr6 28536919 28537125 -153878117 - MER33 DNA MER1_type -264 60 1 180 0 0 0 chr6 28537164 28537184 -153878058 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 436 325 48 10 chr6 28537335 28537541 -153877701 + MER110 LTR ERV1 242 455 -36 1195 186 154 7 chr6 28538060 28538294 -153876948 + MER47A DNA MER2_type 1 292 -2031 12616 60 6 1 chr6 28538294 28540670 -153874572 - L1PA6 LINE L1 -4 6150 3742 1195 186 154 7 chr6 28540670 28540741 -153874501 + MER47A DNA MER2_type 292 351 -15 483 63 0 0 chr6 28540812 28540875 -153874367 + (CA)n Simple_repeat Simple_repeat 2 64 0 1820 139 158 13 chr6 28541644 28542018 -153873224 + MSTA LTR MaLR 1 428 0 8890 158 8 35 chr6 28542020 28543642 -153871600 + MSTA-int LTR MaLR 3 1580 0 1624 178 131 18 chr6 28543644 28544026 -153871216 + MSTA LTR MaLR 3 427 -1 1583 251 48 15 chr6 28544470 28544925 -153870317 - MLT1D LTR MaLR 0 505 36 315 310 9 17 chr6 28545201 28545317 -153869925 + MIR SINE MIR 124 238 -24 749 269 28 9 chr6 28546511 28546723 -153868519 + MER20 DNA MER1_type 2 217 -2 183 80 0 0 chr6 28546761 28546786 -153868456 + (T)n Simple_repeat Simple_repeat 1 25 0 273 373 88 28 chr6 28547056 28547455 -153867787 - MLT1J1 LTR MaLR -3 443 21 1105 113 6 0 chr6 28547480 28547640 -153867602 + AluSg/x SINE Alu 151 311 -1 2125 109 10 6 chr6 28547788 28548099 -153867143 - AluSq SINE Alu -1 312 1 431 359 67 10 chr6 28548790 28548999 -153866243 + L1PA16 LINE L1 790 1010 -6564 12357 240 27 20 chr6 28549123 28552852 -153862390 + L1PA16 LINE L1 2182 5884 -1720 1050 185 132 57 chr6 28552852 28553117 -153862125 + AluJo SINE Alu 2 286 -16 1111 67 0 12 chr6 28553117 28553281 -153861961 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 12357 240 27 20 chr6 28553281 28554107 -153861135 + L1PA16 LINE L1 5884 6775 -829 1768 78 19 109 chr6 28554107 28554428 -153860814 + L1PA10 LINE L1 5876 6167 -1 12357 240 27 20 chr6 28554428 28555160 -153860082 + L1PA16 LINE L1 6775 7500 -104 2021 186 108 48 chr6 28555560 28556652 -153858590 - pTR5 LTR ERV1 -259 2179 743 397 322 72 15 chr6 28556972 28557236 -153858006 - MER110 LTR ERV1 -26 465 187 266 224 19 112 chr6 28557310 28557417 -153857825 - MER110A LTR ERV1 -298 170 74 326 98 0 16 chr6 28557616 28557677 -153857565 + (TG)n Simple_repeat Simple_repeat 2 61 0 419 141 13 0 chr6 28558628 28558706 -153856536 + (TA)n Simple_repeat Simple_repeat 2 80 0 21 0 0 0 chr6 28559420 28559441 -153855801 + AT_rich Low_complexity Low_complexity 1 21 0 354 308 70 69 chr6 28561146 28561520 -153853722 + L1ME3A LINE L1 4348 4722 -1424 245 270 40 10 chr6 28561763 28561863 -153853379 + L1ME3A LINE L1 5341 5443 -719 543 316 58 69 chr6 28561922 28562361 -153852881 + L1ME3A LINE L1 5479 5941 -223 233 298 112 42 chr6 28562510 28562795 -153852447 + L1MC/D LINE L1 5293 5597 -2211 402 74 0 0 chr6 28563434 28563488 -153851754 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr6 28563723 28563744 -153851498 + AT_rich Low_complexity Low_complexity 1 21 0 1927 148 7 3 chr6 28563887 28564192 -153851050 + AluSx SINE Alu 1 306 -6 185 0 40 0 chr6 28564615 28564640 -153850602 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr6 28564733 28564756 -153850486 + AT_rich Low_complexity Low_complexity 1 23 0 1316 269 89 44 chr6 28564989 28565619 -153849623 + L1ME2 LINE L1 3855 4556 -1590 2475 141 24 12 chr6 28565619 28566038 -153849204 + MSTA LTR MaLR 5 428 0 1316 269 89 44 chr6 28566038 28566500 -153848742 + L1ME2 LINE L1 4556 4996 -1150 31 96 0 0 chr6 28566647 28566741 -153848501 + AT_rich Low_complexity Low_complexity 1 94 0 809 227 173 27 chr6 28566796 28567171 -153848071 + L1ME2 LINE L1 5329 5758 -406 606 210 167 21 chr6 28567176 28567362 -153847880 - MER20 DNA MER1_type -6 213 1 528 241 49 15 chr6 28567375 28567578 -153847664 + L1ME2 LINE L1 5768 5977 -187 286 292 26 0 chr6 28567625 28567738 -153847504 + L1MA10 LINE L1 6215 6330 -4 586 237 97 22 chr6 28567742 28567886 -153847356 + LTR37B LTR ERV1 221 390 -78 1252 234 37 68 chr6 28567886 28568368 -153846874 - MLT1C LTR MaLR 0 467 1 586 237 97 22 chr6 28568368 28568451 -153846791 + LTR37B LTR ERV1 390 465 -3 438 210 68 31 chr6 28568685 28568847 -153846395 - L1M4 LINE L1 -2163 3983 3816 29 78 0 0 chr6 28569647 28569711 -153845531 + AT_rich Low_complexity Low_complexity 1 64 0 38 39 0 0 chr6 28569815 28569867 -153845375 + AT_rich Low_complexity Low_complexity 1 52 0 206 300 0 0 chr6 28570845 28570895 -153844347 - MER5A DNA MER1_type -87 102 53 225 233 151 68 chr6 28571705 28571778 -153843464 - MER2 DNA MER2_type 0 345 267 929 153 8 115 chr6 28571825 28572060 -153843182 - MER2 DNA MER2_type -135 210 1 201 74 0 0 chr6 28572392 28572419 -153842823 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 232 246 132 53 chr6 28572728 28572842 -153842400 + L2 LINE L2 3158 3280 -33 25 0 0 0 chr6 28573376 28573401 -153841841 + AT_rich Low_complexity Low_complexity 1 25 0 353 335 26 26 chr6 28573988 28574143 -153841099 - L1MEc LINE L1 -4723 1673 1519 34 24 0 0 chr6 28575966 28576007 -153839235 + AT_rich Low_complexity Low_complexity 1 41 0 275 274 0 20 chr6 28576031 28576133 -153839109 + T-rich Low_complexity Low_complexity 1 100 0 230 359 32 19 chr6 28576360 28576516 -153838726 + L2 LINE L2 2431 2588 -726 201 323 71 40 chr6 28576528 28576627 -153838615 - L2 LINE L2 -852 2462 2361 * 390 338 98 26 chr6 28576625 28576930 -153838312 + L2 LINE L2 2622 2948 -366 282 346 117 0 chr6 28577068 28577247 -153837995 + L2 LINE L2 3114 3313 0 248 372 0 0 chr6 28578071 28578157 -153837085 + L2 LINE L2 2992 3077 -195 726 133 7 14 chr6 28578794 28578937 -153836305 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 255 229 64 0 chr6 28578985 28579094 -153836148 + (TA)n Simple_repeat Simple_repeat 1 116 0 608 22 44 0 chr6 28579789 28579879 -153835363 + (CA)n Simple_repeat Simple_repeat 2 95 0 325 272 112 56 chr6 28580067 28580444 -153834798 - L1MC4 LINE L1 -252 7790 7290 22 0 0 0 chr6 28581898 28581920 -153833322 + AT_rich Low_complexity Low_complexity 1 22 0 5798 94 23 19 chr6 28582062 28583601 -153831641 + L1PA8A LINE L1 4592 6131 0 2877 261 48 53 chr6 28583988 28585656 -153829586 - MER31-int LTR ERV1 0 4871 3355 2035 191 47 29 chr6 28585638 28586187 -153829055 - MER31-int LTR ERV1 -1112 3824 3266 * 3597 91 5 62 chr6 28586702 28586885 -153828357 + L1PB1 LINE L1 5600 5792 -359 267 31 0 0 chr6 28586885 28586917 -153828325 + (TG)n Simple_repeat Simple_repeat 1 32 0 3597 91 5 62 chr6 28586917 28587317 -153827925 + L1PB1 LINE L1 5792 6150 -1 1323 161 109 123 chr6 28589843 28590402 -153824840 - MER31-int LTR ERV1 -1755 4576 4026 5493 120 31 10 chr6 28590463 28591336 -153823906 - L1PA15 LINE L1 0 6165 5275 1869 278 45 53 chr6 28591338 28592090 -153823152 - L1PA12 LINE L1 -6834 747 2 397 227 18 9 chr6 28592097 28592207 -153823035 - MER31-int LTR ERV1 -2345 2591 2481 * 783 240 88 99 chr6 28592205 28593633 -153821609 - MER31-int LTR ERV1 -2550 2573 1161 284 196 196 9 chr6 28593685 28593797 -153821445 - MER34C LTR ERV1 -293 292 160 466 220 0 0 chr6 28593799 28593899 -153821343 - MER31-int LTR ERV1 -4133 990 891 701 278 108 43 chr6 28594166 28594291 -153820951 - MER65A LTR ERV1 0 445 330 2063 131 150 5 chr6 28594291 28594665 -153820577 - MSTA LTR MaLR 0 428 1 701 278 108 43 chr6 28594665 28594957 -153820285 - MER65A LTR ERV1 -115 330 1 2248 112 3 0 chr6 28595017 28595329 -153819913 + AluSp SINE Alu 1 313 0 570 247 89 35 chr6 28596041 28596300 -153818942 + MER20B DNA MER1_type 234 506 -277 252 86 0 0 chr6 28596494 28596503 -153818739 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 86 0 0 chr6 28596503 28596538 -153818704 + (TG)n Simple_repeat Simple_repeat 2 36 0 1973 148 29 37 chr6 28596643 28597021 -153818221 - THE1C LTR MaLR 0 375 1 1873 179 102 8 chr6 28597053 28597444 -153817798 + MSTA LTR MaLR 1 428 0 708 182 202 83 chr6 28597514 28597906 -153817336 + MER31B LTR ERV1 1 514 0 180 289 99 67 chr6 28598298 28598641 -153816601 - L2 LINE L2 -1651 1663 1310 267 31 0 0 chr6 28598828 28598860 -153816382 + (GA)n Simple_repeat Simple_repeat 1 32 0 788 245 55 10 chr6 28598898 28599098 -153816144 - MER58A DNA MER1_type -12 212 4 340 279 152 44 chr6 28599156 28599314 -153815928 - MER5B DNA MER1_type -3 175 1 221 318 73 9 chr6 28599367 28599477 -153815765 - L2 LINE L2 -2344 970 854 950 254 118 76 chr6 28599530 28600046 -153815196 + MLT1F LTR MaLR 3 540 -2 32 91 0 0 chr6 28601445 28601533 -153813709 + AT_rich Low_complexity Low_complexity 1 88 0 2042 139 7 0 chr6 28601613 28601916 -153813326 + AluSx SINE Alu 1 305 -7 212 364 0 0 chr6 28602376 28602442 -153812800 - MIR SINE MIR -38 224 159 1644 126 4 4 chr6 28603173 28603412 -153811830 + AluSx SINE Alu 1 239 -73 24 0 0 0 chr6 28603442 28603466 -153811776 + AT_rich Low_complexity Low_complexity 1 24 0 5471 214 52 41 chr6 28603488 28605207 -153810035 - L1MCa LINE L1 -2216 4210 2473 774 115 66 93 chr6 28605208 28605391 -153809851 - AluJb SINE Alu -13 299 122 1155 154 75 19 chr6 28605391 28605657 -153809585 - L1MCa LINE L1 -3971 2455 2175 2154 91 16 53 chr6 28605657 28605976 -153809266 - AluSx SINE Alu -5 307 1 3559 260 110 40 chr6 28606048 28607083 -153808159 + L1M3d LINE L1 572 1488 -5165 1885 113 4 18 chr6 28607083 28607358 -153807884 + AluSx SINE Alu 39 309 -3 3559 260 110 40 chr6 28607358 28607613 -153807629 + L1M3d LINE L1 1488 1724 -4929 1912 120 72 10 chr6 28607613 28607905 -153807337 + AluSx SINE Alu 1 310 -2 24353 80 7 16 chr6 28607912 28611283 -153803959 + L1P LINE L1 11 3349 -2797 438 211 73 16 chr6 28661287 28661410 -153753832 + MER1B DNA MER1_type 210 339 0 692 218 18 12 chr6 28662398 28662563 -153752679 - MLT1A1 LTR MaLR -2 363 198 2409 62 16 10 chr6 28662766 28663075 -153752167 - AluY SINE Alu 0 311 1 255 133 0 0 chr6 28663348 28663393 -153751849 + (TCCCC)n Simple_repeat Simple_repeat 2 46 0 1564 190 11 4 chr6 28663393 28663672 -153751570 - AluJb SINE Alu -18 294 14 295 104 15 15 chr6 28663809 28663876 -153751366 + (TA)n Simple_repeat Simple_repeat 1 67 0 740 137 23 30 chr6 28665416 28665547 -153749695 - AluJo SINE Alu -66 246 117 2202 119 0 0 chr6 28667587 28667880 -153747362 - AluSx SINE Alu -17 295 3 1196 111 0 0 chr6 28667881 28668034 -153747208 - AluSg/x SINE Alu -18 294 142 391 336 53 45 chr6 28668274 28668649 -153746593 - L1ME LINE L1 -5145 925 548 207 0 0 0 chr6 28669102 28669125 -153746117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 237 73 15 chr6 28670510 28670839 -153744403 - L1ME3A LINE L1 -51 6119 5772 397 196 58 116 chr6 28670861 28670999 -153744243 + L2 LINE L2 3176 3305 -8 428 318 121 12 chr6 28672188 28672361 -153742881 - MIR SINE MIR -19 243 52 184 222 74 19 chr6 28672654 28672708 -153742534 + L2 LINE L2 3256 3312 -1 181 341 106 0 chr6 28672928 28673013 -153742229 + MIR SINE MIR 37 130 -78 1065 244 15 7 chr6 28673581 28673851 -153741391 - MLT1C LTR MaLR 0 467 196 750 168 0 0 chr6 28673857 28673994 -153741248 + CT-rich Low_complexity Low_complexity 4 140 0 465 250 0 0 chr6 28674008 28674132 -153741110 + T-rich Low_complexity Low_complexity 1 124 0 * 935 160 0 6 chr6 28674118 28674299 -153740943 + CT-rich Low_complexity Low_complexity 1 180 0 753 181 7 0 chr6 28674306 28674444 -153740798 - FRAM SINE Alu -17 159 21 560 228 25 13 chr6 28674455 28674613 -153740629 - MLT1C LTR MaLR -307 160 1 1614 154 10 16 chr6 28675873 28676178 -153739064 - L1MC2 LINE L1 -285 6059 5757 2270 112 3 0 chr6 28676269 28676573 -153738669 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr6 28676718 28676739 -153738503 + AT_rich Low_complexity Low_complexity 1 21 0 2991 252 54 4 chr6 28676859 28677808 -153737434 - L1MC4 LINE L1 -188 7854 6859 1335 170 94 11 chr6 28677935 28678243 -153736999 + MER61B LTR ERV1 1 425 0 650 253 26 13 chr6 28678439 28678593 -153736649 + MIR SINE MIR 21 176 -86 180 320 77 0 chr6 28680307 28680385 -153734857 - MIR SINE MIR -63 145 62 195 355 0 0 chr6 28680857 28680933 -153734309 - MIR SINE MIR -108 154 79 237 266 142 0 chr6 28681248 28681361 -153733881 + LTR65 LTR ERV1 35 163 -506 191 384 95 26 chr6 28681712 28682282 -153732960 - L2 LINE L2 -534 2780 2172 376 267 0 0 chr6 28683668 28683758 -153731484 + L1MC/D LINE L1 5574 5663 -2145 22 0 0 0 chr6 28684009 28684031 -153731211 + AT_rich Low_complexity Low_complexity 1 22 0 201 162 0 0 chr6 28684705 28684742 -153730500 + GA-rich Low_complexity Low_complexity 4 40 0 2368 97 3 0 chr6 28685293 28685601 -153729641 + AluSg SINE Alu 1 309 -1 260 291 89 63 chr6 28686606 28686764 -153728478 + MIR SINE MIR 78 239 -23 2344 79 0 10 chr6 28686905 28687210 -153728032 + AluSq SINE Alu 1 302 -11 310 176 24 0 chr6 28687432 28687517 -153727725 + (CAT)n Simple_repeat Simple_repeat 3 89 0 1705 214 36 44 chr6 28687942 28688446 -153726796 - L1MA9 LINE L1 -38 6274 5775 267 31 0 0 chr6 28688456 28688473 -153726769 + (CA)n Simple_repeat Simple_repeat 1 49 0 267 31 0 0 chr6 28688473 28688505 -153726737 + (CA)n Simple_repeat Simple_repeat 2 33 0 2140 119 0 39 chr6 28688522 28688833 -153726409 - AluSx SINE Alu -11 301 3 426 225 0 0 chr6 28688937 28689026 -153726216 - L1MA9 LINE L1 -612 5700 5612 207 218 0 0 chr6 28689026 28689081 -153726161 + (TATG)n Simple_repeat Simple_repeat 2 56 0 626 14 0 0 chr6 28690918 28690990 -153724252 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 35 78 0 0 chr6 28692165 28692242 -153723000 + AT_rich Low_complexity Low_complexity 1 77 0 353 353 31 24 chr6 28692314 28692569 -153722673 + HAL1 LINE L1 604 860 -1647 463 261 48 96 chr6 28692638 28692783 -153722459 + HAL1 LINE L1 1017 1145 -1362 3313 150 30 45 chr6 28692783 28693516 -153721726 + L1MC2 LINE L1 5622 6343 -1 463 261 48 96 chr6 28693516 28693642 -153721600 + HAL1 LINE L1 1145 1275 -1232 219 204 0 0 chr6 28693657 28693706 -153721536 + A-rich Low_complexity Low_complexity 3 51 0 1330 116 0 0 chr6 28693706 28693887 -153721355 + AluSg/x SINE Alu 128 308 -1 729 293 84 21 chr6 28693975 28694263 -153720979 + HAL1 LINE L1 1350 1683 -824 1738 33 0 19 chr6 28694263 28694475 -153720767 + AluY SINE Alu 96 303 -8 729 293 84 21 chr6 28694475 28694671 -153720571 + HAL1 LINE L1 1683 1865 -642 310 284 41 15 chr6 28694754 28694951 -153720291 + HAL1 LINE L1 2115 2316 -191 384 312 144 23 chr6 28694978 28695407 -153719835 - MLT1J LTR MaLR -30 481 1 305 242 118 33 chr6 28695415 28695568 -153719674 + HAL1 LINE L1 2338 2503 -4 723 12 0 0 chr6 28696482 28696564 -153718678 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 198 0 0 0 chr6 28697132 28697154 -153718088 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2018 88 17 7 chr6 28697179 28697473 -153717769 + AluSx SINE Alu 1 297 -15 4003 104 13 17 chr6 28697750 28698324 -153716918 + LTR43 LTR ERV1 1 574 -28 2050 130 7 0 chr6 28698324 28698623 -153716619 + AluSx SINE Alu 2 302 -10 4003 104 13 17 chr6 28698623 28698652 -153716590 + LTR43 LTR ERV1 574 602 0 1979 106 3 11 chr6 28698672 28698981 -153716261 - AluSg SINE Alu 0 307 1 22 88 0 0 chr6 28698984 28699041 -153716201 + AT_rich Low_complexity Low_complexity 1 57 0 671 92 43 51 chr6 28699549 28699950 -153715292 + (TTATA)n Simple_repeat Simple_repeat 1 398 0 466 52 46 76 chr6 28699954 28700387 -153714855 + (TA)n Simple_repeat Simple_repeat 1 419 0 441 297 80 6 chr6 28700436 28700637 -153714605 - L1ME3A LINE L1 -224 5946 5762 1458 248 90 53 chr6 28700644 28700703 -153714539 - MLT1E LTR MaLR -8 585 530 2388 100 0 0 chr6 28700703 28701012 -153714230 + AluSc SINE Alu 1 309 0 1458 248 90 53 chr6 28701012 28701516 -153713726 - MLT1E LTR MaLR -63 530 1 640 281 101 40 chr6 28701604 28702520 -153712722 - L1ME3A LINE L1 -253 5917 4965 189 180 0 0 chr6 28702535 28702585 -153712657 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2140 123 0 7 chr6 28702632 28702933 -153712309 + AluSx SINE Alu 5 303 -9 495 238 85 56 chr6 28702940 28703281 -153711961 - L1ME3A LINE L1 -1230 4916 4566 2082 139 0 0 chr6 28703314 28703601 -153711641 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr6 28703781 28703812 -153711430 + AT_rich Low_complexity Low_complexity 1 31 0 1292 161 14 5 chr6 28704059 28704276 -153710966 + MER20 DNA MER1_type 1 219 0 1664 199 28 14 chr6 28704858 28705215 -153710027 + MLT1A1 LTR MaLR 4 365 0 1814 112 0 24 chr6 28705238 28705489 -153709753 + AluSq SINE Alu 1 245 -68 403 320 104 14 chr6 28705751 28705973 -153709269 - MIR SINE MIR -20 242 1 639 182 123 12 chr6 28706185 28706355 -153708887 + MER53 DNA DNA 1 189 0 2303 85 3 38 chr6 28706422 28706739 -153708503 - AluSg SINE Alu -4 306 1 196 345 69 11 chr6 28707712 28707799 -153707443 - L2 LINE L2 -188 3084 2993 1155 150 5 5 chr6 28708970 28709157 -153706085 - U2 snRNA snRNA -1 187 1 1535 206 32 9 chr6 28709194 28709533 -153705709 - MER65C LTR ERV1 0 461 115 833 206 39 0 chr6 28709587 28709767 -153705475 - MER66B-int LTR ERV1 -1690 4986 4800 441 191 53 15 chr6 28710070 28710201 -153705041 - MER66B-int LTR ERV1 -2577 4021 3886 2485 81 0 0 chr6 28710210 28710517 -153704725 + AluY SINE Alu 1 307 -4 1199 172 24 97 chr6 28710517 28710672 -153704570 - MER66B-int LTR ERV1 -2512 4164 3999 2262 105 0 13 chr6 28710672 28710985 -153704257 - AluSg SINE Alu -1 309 1 1199 172 24 97 chr6 28710985 28711235 -153704007 - MER66B-int LTR ERV1 -2677 3999 2088 765 132 126 0 chr6 28711312 28711502 -153703740 - MER66B-int LTR ERV1 -6187 1933 1720 4385 217 77 20 chr6 28711507 28712910 -153702332 - MER66B-int LTR ERV1 -3839 2837 1305 274 200 62 0 chr6 28713553 28713618 -153701624 - MER66B-int LTR ERV1 -6410 266 198 291 184 0 0 chr6 28713713 28713762 -153701480 - MER66B LTR ERV1 -9 477 429 619 150 164 116 chr6 28714315 28714561 -153700681 - MER41B LTR ERV1 -182 443 210 2126 117 0 0 chr6 28714561 28714863 -153700379 - AluSx SINE Alu 0 302 1 1630 178 3 24 chr6 28714867 28715159 -153700083 - AluJb SINE Alu -18 294 9 619 150 164 116 chr6 28715159 28715268 -153699974 - MER41B LTR ERV1 -417 208 100 22 70 0 0 chr6 28715646 28715689 -153699553 + AT_rich Low_complexity Low_complexity 1 43 0 509 239 57 88 chr6 28715716 28715821 -153699421 - L1ME2 LINE L1 -11 6153 6046 2328 104 0 0 chr6 28715821 28716120 -153699122 + AluSx SINE Alu 2 300 -12 509 239 57 88 chr6 28716120 28716311 -153698931 - L1ME2 LINE L1 -118 6046 5866 1382 241 13 6 chr6 28716410 28716725 -153698517 + MLT1E LTR MaLR 277 593 0 1708 152 9 81 chr6 28716730 28717053 -153698189 + AluJo SINE Alu 1 300 -12 4826 218 60 35 chr6 28717066 28717927 -153697315 - L1ME2 LINE L1 -332 5834 4997 205 29 59 0 chr6 28717927 28717961 -153697281 + (TA)n Simple_repeat Simple_repeat 2 37 0 4826 218 60 35 chr6 28717961 28718975 -153696267 - L1ME2 LINE L1 -1169 4997 3888 2551 111 57 0 chr6 28718975 28719364 -153695878 + LTR57 LTR ERVL 1 411 0 4826 218 60 35 chr6 28719364 28719635 -153695607 - L1ME2 LINE L1 -2278 3888 3625 1022 220 5 0 chr6 28719648 28719848 -153695394 - MER58A DNA MER1_type -23 201 1 894 250 53 35 chr6 28720123 28720486 -153694756 + L1ME LINE L1 5283 5656 -506 2143 113 0 7 chr6 28720486 28720778 -153694464 + AluSc SINE Alu 1 290 -19 894 250 53 35 chr6 28720778 28720873 -153694369 + L1ME LINE L1 5656 5748 -414 21 36 0 0 chr6 28721105 28721133 -153694109 + AT_rich Low_complexity Low_complexity 1 28 0 1346 175 70 49 chr6 28721141 28721427 -153693815 + AluSp SINE Alu 2 293 -20 36 70 0 0 chr6 28721456 28721527 -153693715 + AT_rich Low_complexity Low_complexity 1 71 0 1519 182 24 0 chr6 28721977 28722230 -153693012 + AluJo SINE Alu 24 282 -30 1973 129 44 3 chr6 28722371 28722666 -153692576 + AluSx SINE Alu 1 307 -5 2285 89 3 0 chr6 28723026 28723318 -153691924 - AluSg SINE Alu -17 293 1 392 276 79 16 chr6 28723816 28723943 -153691299 + MIR SINE MIR 20 154 -108 2322 89 0 0 chr6 28723997 28724290 -153690952 - AluY SINE Alu -18 293 1 282 250 58 112 chr6 28725115 28725375 -153689867 - L2 LINE L2 -40 3273 3028 384 242 33 0 chr6 28725825 28725916 -153689326 - MER67B LTR ERV1 0 661 568 * 1376 169 108 18 chr6 28725901 28726179 -153689063 - MER67A LTR ERV1 -240 303 1 323 275 83 63 chr6 28726683 28727080 -153688162 - L1MC5 LINE L1 -62 7899 7495 304 267 95 8 chr6 28727071 28727213 -153688029 - L1MC5 LINE L1 -1046 6765 6611 * 2215 135 0 0 chr6 28727218 28727530 -153687712 - AluSx SINE Alu 0 312 1 615 294 114 55 chr6 28727810 28728354 -153686888 - ERVL LTR ERVL -829 4935 4360 859 310 52 34 chr6 28728382 28728879 -153686363 - ERVL LTR ERVL -1496 4268 3763 286 208 0 0 chr6 28728927 28728980 -153686262 - MIR SINE MIR 0 262 210 2035 121 3 19 chr6 28729117 28729432 -153685810 - AluSx SINE Alu -2 310 1 2131 103 17 0 chr6 28730653 28730943 -153684299 + AluSx SINE Alu 1 295 -17 2493 54 0 0 chr6 28733792 28734089 -153681153 - AluY SINE Alu -14 297 1 583 217 188 52 chr6 28734122 28734527 -153680715 - Charlie4a DNA MER1_type -12 496 37 27 0 0 0 chr6 28734939 28734966 -153680276 + AT_rich Low_complexity Low_complexity 1 27 0 229 324 93 0 chr6 28734981 28735017 -153680225 - L2 LINE L2 -760 2554 2523 3867 141 67 2 chr6 28735017 28735613 -153679629 - MER41B LTR ERV1 0 635 1 229 324 93 0 chr6 28735613 28735684 -153679558 - L2 LINE L2 -791 2523 2437 1274 197 54 26 chr6 28735834 28736319 -153678923 - MER34 LTR ERV1 0 542 11 566 171 197 7 chr6 28736443 28736595 -153678647 - MER67C LTR ERV1 0 710 530 * 1043 187 142 24 chr6 28736565 28736896 -153678346 - MER67C LTR ERV1 -338 372 3 1246 231 102 21 chr6 28737400 28737992 -153677250 - LTR48B LTR ERV1 0 644 3 269 231 90 75 chr6 28739751 28739885 -153675357 - L1ME LINE L1 -481 5640 5505 405 234 159 59 chr6 28739906 28740145 -153675097 - L1ME LINE L1 -757 5389 5127 217 227 186 0 chr6 28740485 28740582 -153674660 - MIR SINE MIR -49 213 99 293 79 0 0 chr6 28740640 28740678 -153674564 - LTR56 LTR ERV1 -58 387 350 350 214 78 10 chr6 28741077 28741180 -153674062 + Charlie5 DNA MER1_type 14 123 -2489 905 234 135 6 chr6 28741182 28741447 -153673795 + Charlie5 DNA MER1_type 2234 2552 -72 2034 89 38 21 chr6 28741447 28741738 -153673504 - AluSx SINE Alu -14 298 3 905 234 135 6 chr6 28741738 28741805 -153673437 + Charlie5 DNA MER1_type 2552 2609 -15 2170 117 7 0 chr6 28741813 28742111 -153673131 - AluSg SINE Alu -10 300 1 1947 133 7 13 chr6 28742242 28742542 -153672700 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr6 28743023 28743046 -153672196 + (A)n Simple_repeat Simple_repeat 1 23 0 2078 125 0 0 chr6 28743356 28743637 -153671605 + AluSx SINE Alu 1 281 -31 1489 142 12 20 chr6 28743971 28744224 -153671018 - AluSx SINE Alu -12 300 50 387 0 0 0 chr6 28744472 28744515 -153670727 + (CA)n Simple_repeat Simple_repeat 2 44 0 2342 49 33 29 chr6 28746994 28747300 -153667942 - AluSx SINE Alu -5 307 1 375 332 83 28 chr6 28747719 28748004 -153667238 + L2 LINE L2 2794 3098 -215 1211 279 67 17 chr6 28748255 28748674 -153666568 - LTR16A LTR ERVL -10 440 1 2224 104 3 0 chr6 28748778 28749075 -153666167 - AluSq SINE Alu -2 311 14 585 122 0 0 chr6 28749419 28749493 -153665749 + tRNA-Val-GTG tRNA tRNA 1 74 -2 1391 102 0 0 chr6 28749531 28749717 -153665525 + AluY SINE Alu 122 307 -4 29 28 0 0 chr6 28750157 28750193 -153665049 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr6 28750655 28750680 -153664562 + (A)n Simple_repeat Simple_repeat 1 25 0 299 370 48 0 chr6 28750900 28751065 -153664177 + L2 LINE L2 2925 3097 -175 2017 123 0 7 chr6 28751068 28751368 -153663874 - AluSg SINE Alu -12 298 1 266 88 0 0 chr6 28751397 28751431 -153663811 + U2 snRNA snRNA 1 34 -154 234 95 214 0 chr6 28751431 28751473 -153663769 + U2 snRNA snRNA 7 57 -131 2168 97 17 7 chr6 28751624 28751939 -153663303 + AluSx SINE Alu 1 318 0 296 319 28 14 chr6 28751956 28752097 -153663145 - LTR33 LTR ERVL -77 444 302 * 400 241 106 71 chr6 28752095 28752221 -153663021 - LTR33 LTR ERVL -345 176 41 2437 91 0 0 chr6 28752221 28752528 -153662714 + AluSg SINE Alu 1 307 -3 400 241 106 71 chr6 28752528 28752571 -153662671 - LTR33 LTR ERVL -480 41 1 1715 180 0 40 chr6 28752863 28753186 -153662056 + AluJb SINE Alu 1 310 -2 212 0 36 0 chr6 28753371 28753399 -153661843 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 825 337 22 16 chr6 28753399 28753770 -153661472 - ERVL LTR ERVL -663 5101 4729 365 164 68 0 chr6 28753772 28753845 -153661397 - MLT1A1 LTR MaLR -287 78 1 692 293 102 25 chr6 28753845 28754245 -153660997 - L2 LINE L2 -1312 2002 1572 2120 109 0 0 chr6 28754741 28755086 -153660156 + AluY SINE Alu 1 345 0 22 0 0 0 chr6 28755260 28755282 -153659960 + AT_rich Low_complexity Low_complexity 1 22 0 1428 191 0 12 chr6 28755282 28755534 -153659708 - AluJo SINE Alu -25 287 39 2235 114 13 0 chr6 28755865 28756325 -153658917 + AluSx SINE Alu 1 464 0 620 126 0 0 chr6 28756443 28756530 -153658712 + AluS SINE Alu 2 88 -224 695 0 0 0 chr6 28757303 28757375 -153657867 + tRNA-His-CAC tRNA tRNA 1 72 -3 2131 131 0 0 chr6 28758201 28758492 -153656750 + AluSx SINE Alu 4 294 -18 180 250 0 79 chr6 28758541 28758617 -153656625 - L3 LINE CR1 -351 1226 1157 194 327 10 30 chr6 28759367 28759468 -153655774 + MIR SINE MIR 104 202 -60 378 308 34 14 chr6 28761016 28761162 -153654080 + L2 LINE L2 3165 3313 0 656 40 0 0 chr6 28761447 28761521 -153653721 + tRNA-Thr-ACT tRNA tRNA 1 74 -3 2492 87 0 0 chr6 28762775 28763085 -153652157 + AluSg SINE Alu 1 310 0 212 193 18 35 chr6 28763361 28763418 -153651824 + A-rich Low_complexity Low_complexity 4 59 0 2129 103 32 0 chr6 28763428 28763710 -153651532 + AluSx SINE Alu 2 292 -20 231 36 0 0 chr6 28763716 28763744 -153651498 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 23 68 0 0 chr6 28764111 28764155 -153651087 + AT_rich Low_complexity Low_complexity 1 44 0 1077 179 0 0 chr6 28764369 28764531 -153650711 - FRAM SINE Alu 0 166 5 2318 105 0 0 chr6 28764825 28765121 -153650121 - AluSx SINE Alu -16 296 1 603 207 13 45 chr6 28765155 28765336 -153649906 + MER31-int LTR ERV1 3171 3288 -1648 1712 170 0 38 chr6 28765784 28766101 -153649141 - AluJo SINE Alu -7 305 1 2468 222 53 82 chr6 28766238 28766377 -153648865 + MER31-int LTR ERV1 3401 3543 -1393 1758 151 37 3 chr6 28766377 28766516 -153648726 - AluSx SINE Alu -3 309 176 1894 83 4 8 chr6 28766516 28766770 -153648472 - AluSc SINE Alu -56 253 1 1758 151 37 3 chr6 28766770 28766929 -153648313 - AluSx SINE Alu -136 176 1 2468 222 53 82 chr6 28766929 28767613 -153647629 + MER31-int LTR ERV1 3543 4200 -736 1020 205 144 26 chr6 28767687 28767857 -153647385 + LTR37A LTR ERV1 1 150 -276 2364 152 25 57 chr6 28767857 28768297 -153646945 + MSTB LTR MaLR 1 426 0 1020 205 144 26 chr6 28768297 28768473 -153646769 + LTR37A LTR ERV1 150 388 -38 4972 186 41 14 chr6 28768473 28769385 -153645857 - L1MB5 LINE L1 -15 6159 5273 1689 127 162 4 chr6 28769385 28769644 -153645598 - AluSg SINE Alu 0 300 1 4972 186 41 14 chr6 28769644 28770152 -153645090 - L1MB5 LINE L1 -901 5273 4780 2312 131 0 0 chr6 28770152 28770464 -153644778 - AluSx SINE Alu 0 312 1 4972 186 41 14 chr6 28770464 28770637 -153644605 - L1MB5 LINE L1 -1394 4780 4613 2093 203 27 24 chr6 28770637 28770935 -153644307 + MLT2D LTR ERVL 1 297 -117 2557 46 13 0 chr6 28770935 28771117 -153644125 - AluY SINE Alu 0 311 122 231 36 0 0 chr6 28771117 28771145 -153644097 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2557 46 13 0 chr6 28771145 28771269 -153643973 - AluY SINE Alu -189 122 1 2093 203 27 24 chr6 28771269 28771341 -153643901 + MLT2D LTR ERVL 297 375 -39 330 26 0 0 chr6 28771341 28771380 -153643862 + (CA)n Simple_repeat Simple_repeat 2 40 0 2093 203 27 24 chr6 28771380 28771421 -153643821 + MLT2D LTR ERVL 375 414 0 4972 186 41 14 chr6 28771421 28771459 -153643783 - L1MB5 LINE L1 -1561 4613 4478 23 33 0 0 chr6 28771642 28771672 -153643570 + AT_rich Low_complexity Low_complexity 1 30 0 2370 74 3 3 chr6 28771773 28772071 -153643171 + AluSx SINE Alu 1 298 -14 231 36 0 0 chr6 28772084 28772112 -153643130 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1716 143 0 83 chr6 28772427 28772763 -153642479 - AluSx SINE Alu -2 310 3 474 167 0 0 chr6 28772959 28773055 -153642187 - L1MB5 LINE L1 -1656 4490 4395 289 158 0 18 chr6 28773066 28773123 -153642119 + LTR37A LTR ERV1 371 426 0 2245 89 0 20 chr6 28773319 28773622 -153641620 + AluSq SINE Alu 1 297 -16 432 263 41 26 chr6 28773684 28773878 -153641364 + L1MC4a LINE L1 5853 6049 -1759 1285 254 125 14 chr6 28774142 28774493 -153640749 - MLT1E2 LTR MaLR -2 624 235 257 318 0 28 chr6 28774539 28774646 -153640596 - L2 LINE L2 0 3313 3210 2877 16 0 0 chr6 28774866 28775177 -153640065 + AluYa5 SINE Alu 1 311 0 2403 103 0 0 chr6 28775746 28776058 -153639184 + AluSx SINE Alu 1 312 0 207 100 0 0 chr6 28776215 28776245 -153638997 + (A)n Simple_repeat Simple_repeat 1 30 0 189 154 0 0 chr6 28776342 28776381 -153638861 + A-rich Low_complexity Low_complexity 1 39 0 677 0 0 0 chr6 28776390 28776465 -153638777 - tRNA-Ile-ATT tRNA tRNA -2 75 1 29 0 0 0 chr6 28776562 28776591 -153638651 + AT_rich Low_complexity Low_complexity 1 29 0 1262 191 42 4 chr6 28777402 28777638 -153637604 + LTR10B LTR ERV1 300 544 -3 11664 274 54 49 chr6 28777640 28777827 -153637415 + LTR10B-int LTR ERV1 3 188 -7597 1769 99 0 0 chr6 28777827 28778049 -153637193 + AluSg/x SINE Alu 81 302 -10 11664 274 54 49 chr6 28778049 28783159 -153632083 + LTR10B-int LTR ERV1 188 5390 -2395 6596 270 52 32 chr6 28783165 28785334 -153629908 + BaEV-int LTR ERV1 4437 6649 0 1171 228 30 23 chr6 28785413 28785715 -153629527 + LTR10B LTR ERV1 217 546 -1 2099 108 7 7 chr6 28786108 28786403 -153628839 + AluY SINE Alu 6 300 -11 3830 104 13 20 chr6 28786697 28787247 -153627995 + LTR14 LTR ERVK 3 548 0 34296 98 11 33 chr6 28787247 28789993 -153625249 + HERVKC4 LTR ERVK 1 2805 -2457 2394 46 39 23 chr6 28789993 28790299 -153624943 + AluY SINE Alu 1 311 0 2335 87 0 3 chr6 28790301 28790600 -153624642 + AluY SINE Alu 1 298 -13 34296 98 11 33 chr6 28790600 28790753 -153624489 + HERVKC4 LTR ERVK 2806 2961 -2301 2465 61 0 13 chr6 28790753 28791065 -153624177 + AluY SINE Alu 1 308 -3 34296 98 11 33 chr6 28791065 28791220 -153624022 + HERVKC4 LTR ERVK 2961 3118 -2144 1473 46 6 11 chr6 28791220 28791395 -153623847 - AluY SINE Alu -137 174 1 34296 98 11 33 chr6 28791395 28793416 -153621826 + HERVKC4 LTR ERVK 3118 4971 -291 945 145 6 13 chr6 28793416 28793575 -153621667 - LTR13 LTR ERVK 0 1007 850 5305 156 43 37 chr6 28793609 28794610 -153620632 - LTR13 LTR ERVK 0 1007 1 1865 129 7 11 chr6 28794610 28794890 -153620352 + HERVKC4 LTR ERVK 4966 5244 -18 3865 108 4 21 chr6 28794898 28795456 -153619786 + LTR14 LTR ERVK 1 548 0 302 322 70 0 chr6 28795887 28796030 -153619212 - L1MCc LINE L1 -6254 169 17 2043 128 3 3 chr6 28796507 28796805 -153618437 - AluSx SINE Alu -14 298 1 1996 129 10 16 chr6 28796982 28797292 -153617950 + AluSx SINE Alu 1 308 -4 2122 147 0 0 chr6 28797294 28797600 -153617642 + AluSg SINE Alu 4 309 -1 2268 105 30 0 chr6 28797610 28797914 -153617328 + AluSq SINE Alu 1 313 0 1038 230 8 70 chr6 28797922 28798322 -153616920 - L1M4 LINE L1 -797 5349 4975 2245 95 0 3 chr6 28798338 28798670 -153616572 - AluSp SINE Alu 0 332 2 1901 113 158 78 chr6 28798726 28798994 -153616248 - MER4A LTR ERV1 -1 663 355 2656 61 3 0 chr6 28798994 28799306 -153615936 + AluSp SINE Alu 1 313 0 1901 113 158 78 chr6 28799306 28799410 -153615832 - MER4A LTR ERV1 -309 355 261 535 133 89 0 chr6 28799410 28799500 -153615742 - MER4A LTR ERV1 -566 98 1 803 222 57 84 chr6 28799500 28799708 -153615534 - L1M4 LINE L1 -2118 4028 3816 1869 144 0 35 chr6 28799708 28800021 -153615221 - AluSx SINE Alu -10 302 1 803 222 57 84 chr6 28800021 28800055 -153615187 - L1M4 LINE L1 -2330 3816 3783 1872 167 44 37 chr6 28800055 28800260 -153614982 - MLT1B LTR MaLR -4 386 175 1846 124 7 49 chr6 28800260 28800567 -153614675 - AluSx SINE Alu -18 294 1 1872 167 44 37 chr6 28800567 28800744 -153614498 - MLT1B LTR MaLR -215 175 1 803 222 57 84 chr6 28800744 28800869 -153614373 - L1M4 LINE L1 -2363 3783 3670 2400 75 0 3 chr6 28800873 28801178 -153614064 - AluY SINE Alu -7 304 1 2084 119 3 0 chr6 28801180 28801475 -153613767 - AluSq SINE Alu -17 296 1 1750 177 30 7 chr6 28801857 28802162 -153613080 - AluJb SINE Alu 0 312 1 2058 128 7 14 chr6 28802484 28802774 -153612468 - AluSx SINE Alu -24 288 1 1239 220 84 40 chr6 28802934 28803406 -153611836 - MER39 LTR ERV1 -6 671 1 181 263 221 0 chr6 28803406 28803501 -153611741 + L2 LINE L2 3142 3257 -56 2175 121 0 10 chr6 28803693 28804000 -153611242 - AluSx SINE Alu -8 304 1 634 113 0 57 chr6 28804102 28804202 -153611040 - MLT2D LTR ERVL 0 414 321 2957 125 15 9 chr6 28804202 28804666 -153610576 + MER31A LTR ERV1 1 467 -18 388 145 0 16 chr6 28804710 28804772 -153610470 - MER31A LTR ERV1 -202 283 223 628 41 0 0 chr6 28805264 28805337 -153609905 - tRNA-Val-GTG tRNA tRNA -3 73 1 496 165 62 0 chr6 28806071 28806168 -153609074 + MLT1B LTR MaLR 288 390 0 6058 258 49 37 chr6 28806169 28807199 -153608043 + ERVL LTR ERVL 1562 2579 -2946 1884 123 77 25 chr6 28807199 28807525 -153607717 - MER61A LTR ERV1 0 343 1 6058 258 49 37 chr6 28807525 28807821 -153607421 + ERVL LTR ERVL 2579 2870 -2655 2403 42 29 29 chr6 28807821 28808132 -153607110 + AluY SINE Alu 1 311 0 6058 258 49 37 chr6 28808132 28808928 -153606314 + ERVL LTR ERVL 2870 3751 -1774 524 105 0 0 chr6 28809032 28809108 -153606134 + tRNA-Ser-TCC tRNA tRNA 8 83 -2 1247 119 0 0 chr6 28809471 28809648 -153605594 + AluSg/x SINE Alu 136 312 0 325 89 0 0 chr6 28809660 28809705 -153605537 + Alu SINE Alu 1 45 -256 1014 73 55 49 chr6 28809705 28809869 -153605373 + AluSg/x SINE Alu 135 299 -10 2433 52 0 26 chr6 28810061 28810369 -153604873 + AluY SINE Alu 1 300 -11 219 130 0 43 chr6 28811116 28811162 -153604080 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr6 28811407 28811435 -153603807 + AT_rich Low_complexity Low_complexity 1 28 0 623 112 92 0 chr6 28811538 28811636 -153603606 - FLAM_C SINE Alu -35 108 2 2258 93 13 13 chr6 28811717 28812030 -153603212 - AluSq SINE Alu 0 313 1 2255 92 3 3 chr6 28812360 28812655 -153602587 + AluSp SINE Alu 5 299 -14 180 0 0 0 chr6 28812692 28812712 -153602530 + (A)n Simple_repeat Simple_repeat 1 20 0 2147 96 0 0 chr6 28812712 28812992 -153602250 + AluSq SINE Alu 1 280 -33 643 27 0 0 chr6 28813020 28813093 -153602149 - tRNA-Arg-CGC tRNA tRNA -3 73 1 2258 84 19 10 chr6 28813349 28813658 -153601584 - AluSx SINE Alu 0 312 1 2350 75 0 7 chr6 28813976 28814281 -153600961 + AluSx SINE Alu 5 307 -5 643 27 0 0 chr6 28814349 28814422 -153600820 + tRNA-Arg-CGC tRNA tRNA 1 73 -3 23 33 0 0 chr6 28814437 28814467 -153600775 + AT_rich Low_complexity Low_complexity 1 30 0 2102 89 7 13 chr6 28814647 28814950 -153600292 - AluSx SINE Alu -11 301 1 1765 169 60 23 chr6 28815058 28815087 -153600155 + L1MB7 LINE L1 5804 5830 -354 2040 105 7 21 chr6 28815087 28815404 -153599838 + AluSx SINE Alu 1 313 0 1765 169 60 23 chr6 28815404 28815722 -153599520 + L1MB7 LINE L1 5830 6165 -19 1379 142 27 108 chr6 28815763 28815942 -153599300 - AluYb8 SINE Alu -13 305 113 2155 87 0 0 chr6 28815942 28816219 -153599023 + AluSq SINE Alu 1 277 -36 306 0 0 0 chr6 28816223 28816257 -153598985 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1379 142 27 108 chr6 28816257 28816404 -153598838 - AluYb8 SINE Alu -208 110 1 1925 129 0 26 chr6 28816441 28816628 -153598614 - AluSx SINE Alu -1 311 134 198 0 0 0 chr6 28816628 28816650 -153598592 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1925 129 0 26 chr6 28816650 28816773 -153598469 - AluSx SINE Alu -178 134 9 187 286 45 45 chr6 28817573 28817685 -153597557 - MER5A DNA MER1_type -1 188 77 502 235 34 8 chr6 28817988 28818107 -153597135 + FLAM_A SINE Alu 2 123 -10 2297 104 0 0 chr6 28818272 28818569 -153596673 + AluSq SINE Alu 1 297 -16 417 193 0 0 chr6 28818570 28818658 -153596584 + L1MB8 LINE L1 5800 5887 -291 393 114 166 74 chr6 28818793 28818906 -153596336 + Charlie5 DNA MER1_type 2396 2532 -92 610 244 0 8 chr6 28818906 28819037 -153596205 + FLAM_A SINE Alu 1 130 -3 393 114 166 74 chr6 28819037 28819098 -153596144 + Charlie5 DNA MER1_type 2532 2586 -38 234 0 0 0 chr6 28819290 28819316 -153595926 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr6 28819315 28819349 -153595893 + (GA)n Simple_repeat Simple_repeat 1 34 0 1847 121 22 4 chr6 28819349 28819622 -153595620 - AluSx SINE Alu -34 278 1 238 214 0 0 chr6 28819717 28819759 -153595483 + tRNA-Thr-ACT tRNA tRNA 15 56 -21 2212 80 28 7 chr6 28820076 28820365 -153594877 + AluSq SINE Alu 1 295 -18 1993 114 3 24 chr6 28820572 28820888 -153594354 - AluSp SINE Alu 0 313 4 581 227 31 25 chr6 28820973 28821136 -153594106 - LTR41 LTR ERVL -594 179 16 1992 138 0 25 chr6 28821303 28821622 -153593620 - AluSx SINE Alu -1 311 1 2209 129 0 0 chr6 28821643 28821953 -153593289 - AluSq SINE Alu -3 310 1 2492 76 3 0 chr6 28822212 28822515 -153592727 - AluSp SINE Alu -6 307 4 216 0 0 0 chr6 28822518 28822542 -153592700 + (T)n Simple_repeat Simple_repeat 1 24 0 229 196 22 0 chr6 28822712 28822758 -153592484 + CT-rich Low_complexity Low_complexity 4 50 0 1590 188 66 43 chr6 28822791 28823171 -153592071 - MLT1B LTR MaLR 0 390 1 1982 128 11 3 chr6 28823208 28823336 -153591906 + AluSx SINE Alu 1 127 -182 207 0 0 0 chr6 28823336 28823359 -153591883 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1982 128 11 3 chr6 28823359 28823537 -153591705 + AluSx SINE Alu 127 309 0 1754 241 85 26 chr6 28823544 28824038 -153591204 + L1MDa LINE L1 31 553 -5987 332 304 99 28 chr6 28824517 28824698 -153590544 - HAL1 LINE L1 -2215 292 99 334 183 12 12 chr6 28824703 28824785 -153590457 + CT-rich Low_complexity Low_complexity 4 85 0 672 240 30 59 chr6 28824970 28825038 -153590204 + L1MC/D LINE L1 24 92 -6331 2053 121 0 57 chr6 28825038 28825370 -153589872 + AluSq SINE Alu 1 313 0 672 240 30 59 chr6 28825370 28825572 -153589670 + L1MC/D LINE L1 92 286 -6137 1073 127 97 2 chr6 28825723 28825966 -153589276 + MER2 DNA MER2_type 22 324 -21 293 206 32 16 chr6 28825966 28826029 -153589213 + L1MC/D LINE L1 404 467 -5956 651 191 0 0 chr6 28826250 28826365 -153588877 - MSTB2 LTR MaLR 0 457 343 1182 194 40 73 chr6 28826365 28826571 -153588671 + L1MC/D LINE L1 4693 4881 -2060 2389 40 0 80 chr6 28826571 28826895 -153588347 - AluY SINE Alu -13 298 1 1182 194 40 73 chr6 28826895 28827085 -153588157 + L1MC/D LINE L1 4881 5076 -1865 229 230 14 0 chr6 28827122 28827196 -153588046 + L1MC/D LINE L1 5060 5134 -1807 381 221 0 84 chr6 28827196 28827265 -153587977 - Tigger5 DNA MER2_type 0 2323 2263 2344 54 3 44 chr6 28827265 28827580 -153587662 + AluY SINE Alu 1 302 -9 381 221 0 84 chr6 28827580 28827605 -153587637 - Tigger5 DNA MER2_type -60 2263 2237 1957 81 81 8 chr6 28827713 28827973 -153587269 + AluSx SINE Alu 15 293 -19 776 236 93 81 chr6 28827995 28828351 -153586891 + L1MC/D LINE L1 6057 6379 -599 1072 129 0 0 chr6 28828979 28829134 -153586108 - AluSg/x SINE Alu -22 290 136 2398 79 0 0 chr6 28829136 28829428 -153585814 - AluSq SINE Alu -4 309 18 284 162 30 45 chr6 28829734 28829812 -153585430 - tRNA-Ser-TCA tRNA tRNA -6 79 3 240 33 0 0 chr6 28830143 28830173 -153585069 - Alu SINE Alu -79 223 194 2363 80 0 3 chr6 28830442 28830741 -153584501 + AluSx SINE Alu 1 298 -14 2250 117 0 0 chr6 28830947 28831254 -153583988 + AluSg SINE Alu 1 307 -3 438 322 82 18 chr6 28831323 28831729 -153583513 + L1ME LINE L1 5389 5817 -353 2321 101 0 10 chr6 28831759 28832066 -153583176 - AluSg SINE Alu -6 304 1 2910 12 0 3 chr6 28832111 28832430 -153582812 + AluYb8 SINE Alu 1 318 0 372 242 15 76 chr6 28833696 28833828 -153581414 - L2 LINE L2 0 3313 3190 222 174 0 0 chr6 28834048 28834094 -153581148 + (TA)n Simple_repeat Simple_repeat 2 47 0 643 41 0 0 chr6 28834685 28834758 -153580484 + tRNA-Val-GTT tRNA tRNA 1 73 -3 2345 90 0 3 chr6 28834792 28835102 -153580140 - AluSc SINE Alu 0 309 1 247 170 0 19 chr6 28835134 28835187 -153580055 + L1MC4 LINE L1 6652 6703 -1339 250 129 32 0 chr6 28835195 28835257 -153579985 + (TA)n Simple_repeat Simple_repeat 1 64 0 2501 52 7 0 chr6 28835258 28835548 -153579694 - AluSp SINE Alu -21 292 1 207 336 48 8 chr6 28836117 28836242 -153579000 - L2 LINE L2 -3 3310 3181 677 0 0 0 chr6 28836746 28836821 -153578421 - tRNA-Ile-ATT tRNA tRNA -2 75 1 198 143 0 0 chr6 28837025 28837060 -153578182 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 277 171 163 39 chr6 28838515 28838644 -153576598 - Charlie2 DNA MER1_type -41 2821 2677 964 271 80 28 chr6 28838672 28838785 -153576457 - Charlie2 DNA MER1_type -353 2509 2403 2509 77 0 0 chr6 28838785 28839084 -153576158 - AluSg SINE Alu -11 299 1 964 271 80 28 chr6 28839084 28839586 -153575656 - Charlie2 DNA MER1_type -459 2403 1862 203 45 68 45 chr6 28839707 28839751 -153575491 + T-rich Low_complexity Low_complexity 1 45 0 317 263 0 12 chr6 28839768 28839848 -153575394 - Charlie2 DNA MER1_type -2684 178 100 1872 95 0 20 chr6 28839848 28840101 -153575141 - AluSg SINE Alu -62 248 1 2388 168 37 56 chr6 28840548 28841067 -153574175 + LTR22 LTR ERVK 1 509 0 2387 83 0 0 chr6 28841292 28841580 -153573662 - AluSc SINE Alu -20 289 2 2609 213 13 13 chr6 28843082 28843715 -153571527 + L1MB7 LINE L1 5552 6184 0 808 177 61 80 chr6 28843727 28843842 -153571400 - L1MC/D LINE L1 -676 5502 5386 2217 96 7 0 chr6 28843842 28844122 -153571120 + AluSx SINE Alu 1 282 -30 198 0 0 0 chr6 28844125 28844147 -153571095 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 808 177 61 80 chr6 28844147 28844287 -153570955 - L1MC/D LINE L1 -794 5384 5284 776 197 72 0 chr6 28844379 28844531 -153570711 - FAM SINE Alu -9 166 4 2282 91 0 3 chr6 28844591 28844887 -153570355 - AluSg SINE Alu -15 295 1 425 324 75 0 chr6 28844902 28845130 -153570112 + L2 LINE L2 2768 3010 -303 939 306 115 32 chr6 28845279 28845992 -153569250 - L2 LINE L2 -17 3296 2530 703 321 18 21 chr6 28846015 28846295 -153568947 - L2 LINE L2 -151 3162 2884 234 342 44 35 chr6 28847737 28847965 -153567277 - L2 LINE L2 -2 3311 3082 210 279 22 34 chr6 28848465 28848644 -153566598 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 584 278 102 75 chr6 28848652 28849092 -153566150 + L2 LINE L2 2566 3012 -301 298 179 21 63 chr6 28849206 28849301 -153565941 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 467 251 95 10 chr6 28851231 28851426 -153563816 + MIR SINE MIR 26 239 -23 234 220 0 0 chr6 28851495 28851545 -153563697 + L2 LINE L2 3222 3271 -1 503 231 105 0 chr6 28851642 28851785 -153563457 - MIR SINE MIR -32 230 73 534 129 108 0 chr6 28852729 28852822 -153562420 + MER53 DNA DNA 3 105 -84 633 260 18 55 chr6 28852836 28853055 -153562187 + MIR SINE MIR 52 262 0 320 327 156 65 chr6 28853083 28853404 -153561838 + L2 LINE L2 2904 3253 -19 311 351 74 55 chr6 28853518 28853789 -153561453 + L2 LINE L2 2927 3202 -70 413 239 11 58 chr6 28854912 28855100 -153560142 + (TCTCTG)n Simple_repeat Simple_repeat 1 179 0 210 71 0 0 chr6 28855176 28855204 -153560038 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 321 242 34 34 chr6 28855224 28855373 -153559869 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 249 275 157 22 chr6 28855562 28855740 -153559502 - L1M4b LINE L1 -6655 204 3 * 317 194 0 0 chr6 28855739 28855801 -153559441 - L1ME3 LINE L1 -202 5960 5899 373 215 25 3 chr6 28855805 28855893 -153559349 - MLT1C LTR MaLR -78 389 305 346 260 18 41 chr6 28855915 28856084 -153559158 + (CAGAGA)n Simple_repeat Simple_repeat 2 166 0 1056 191 46 77 chr6 28856113 28856437 -153558805 - MLT1C LTR MaLR -153 314 1 * 2540 186 72 14 chr6 28856437 28856948 -153558294 - MER89 LTR ERV1 -18 541 1 309 315 61 44 chr6 28857210 28857449 -153557793 - L1M4b LINE L1 -5744 1115 640 404 277 142 19 chr6 28857572 28857727 -153557515 - L1M4b LINE L1 -6587 272 99 2220 111 7 0 chr6 28857846 28858143 -153557099 + AluSq SINE Alu 1 299 -14 324 0 0 0 chr6 28858524 28858560 -153556682 + (CA)n Simple_repeat Simple_repeat 2 37 0 2155 88 17 7 chr6 28858630 28858924 -153556318 - AluSg SINE Alu -13 297 1 1951 75 8 4 chr6 28859207 28859461 -153555781 + AluSq SINE Alu 58 312 -1 416 158 0 13 chr6 28860107 28860183 -153555059 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 1957 93 28 75 chr6 28860314 28860635 -153554607 + AluSq SINE Alu 1 306 -7 2271 111 0 0 chr6 28861272 28861569 -153553673 + AluSx SINE Alu 5 301 -11 1959 149 0 7 chr6 28861733 28862034 -153553208 - AluSx SINE Alu -9 303 5 571 211 18 0 chr6 28862545 28862659 -153552583 - L1ME1 LINE L1 -46 6120 6005 2050 167 120 5 chr6 28862659 28862846 -153552396 + MLT1D LTR MaLR 51 215 -290 2068 133 0 10 chr6 28862846 28863146 -153552096 + AluSx SINE Alu 1 297 -15 2050 167 120 5 chr6 28863146 28863366 -153551876 + MLT1D LTR MaLR 215 505 0 1987 219 37 39 chr6 28863366 28863724 -153551518 - L1ME1 LINE L1 -148 6018 5660 1658 202 97 13 chr6 28863724 28863762 -153551480 - MLT2D LTR ERVL 0 414 381 357 24 0 0 chr6 28863762 28863804 -153551438 + (TG)n Simple_repeat Simple_repeat 2 43 0 1658 202 97 13 chr6 28863804 28864147 -153551095 - MLT2D LTR ERVL -33 381 1 1987 219 37 39 chr6 28864147 28864332 -153550910 - L1ME1 LINE L1 -506 5660 5476 1087 233 25 13 chr6 28864347 28864664 -153550578 - L1ME1 LINE L1 -1047 5099 4779 3249 146 93 30 chr6 28864677 28864808 -153550434 + L1MB3 LINE L1 5455 5576 -607 2080 118 13 10 chr6 28864808 28865112 -153550130 - AluSx SINE Alu -7 305 1 3249 146 93 30 chr6 28865112 28865313 -153549929 + L1MB3 LINE L1 5576 5763 -420 2091 109 20 16 chr6 28865313 28865616 -153549626 + AluSp SINE Alu 1 304 -9 3249 146 93 30 chr6 28865616 28865945 -153549297 + L1MB3 LINE L1 5763 6159 -24 387 0 0 0 chr6 28866363 28866406 -153548836 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2129 95 0 3 chr6 28866409 28866692 -153548550 - AluSx SINE Alu -30 282 1 207 88 0 0 chr6 28866771 28866805 -153548437 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 297 275 11 0 chr6 28867086 28867177 -153548065 - L1ME LINE L1 -320 5801 5710 243 0 0 0 chr6 28867609 28867636 -153547606 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 234 62 0 0 chr6 28868543 28868575 -153546667 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2046 131 3 0 chr6 28868967 28869272 -153545970 + AluSq SINE Alu 1 306 -7 244 132 0 73 chr6 28869548 28869616 -153545626 + (TA)n Simple_repeat Simple_repeat 2 64 0 481 42 0 106 chr6 28869627 28869816 -153545426 + (TA)n Simple_repeat Simple_repeat 2 170 0 2630 48 0 6 chr6 28870020 28870331 -153544911 + AluY SINE Alu 1 309 -2 2047 76 7 35 chr6 28870758 28871166 -153544076 - AluSg SINE Alu 0 400 1 263 173 109 36 chr6 28871245 28871355 -153543887 + MER113 DNA MER1_type? 122 239 -282 1007 291 50 48 chr6 28872521 28872981 -153542261 + L1MEc LINE L1 42 502 -5894 595 80 0 0 chr6 28873136 28873211 -153542031 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 209 77 51 0 chr6 28873774 28873813 -153541429 + A-rich Low_complexity Low_complexity 2 42 0 644 27 0 0 chr6 28874386 28874461 -153540781 - tRNA-Ile-ATT tRNA tRNA -2 75 1 38 0 0 0 chr6 28874656 28874694 -153540548 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 41 35 chr6 28875205 28875377 -153539865 - L1MC4a LINE L1 -1866 5942 5770 226 337 12 12 chr6 28875471 28875554 -153539688 - L1MC4a LINE L1 -2176 5632 5550 2135 86 36 13 chr6 28875614 28875917 -153539325 - AluSq SINE Alu -3 310 1 181 171 24 0 chr6 28876228 28876269 -153538973 - L2 LINE L2 -401 2871 2830 2319 88 0 0 chr6 28876373 28876679 -153538563 + AluSx SINE Alu 1 306 -6 240 343 10 10 chr6 28876735 28876837 -153538405 - L2 LINE L2 -515 2799 2698 2137 110 0 26 chr6 28876838 28877148 -153538094 - AluSx SINE Alu -10 302 1 817 340 64 14 chr6 28877203 28877788 -153537454 - L2 LINE L2 -39 3274 2658 2709 36 0 0 chr6 28877819 28878126 -153537116 + AluY SINE Alu 1 307 -4 717 314 18 13 chr6 28878216 28878442 -153536800 - LTR16A LTR ERVL -153 297 71 216 0 0 0 chr6 28878680 28878704 -153536538 + (A)n Simple_repeat Simple_repeat 1 24 0 643 55 0 0 chr6 28879446 28879519 -153535723 - tRNA-Val-GTG tRNA tRNA -3 73 1 893 179 20 20 chr6 28879978 28880173 -153535069 + L1M2 LINE L1 3385 3579 -2567 * 938 151 102 15 chr6 28880162 28880320 -153534922 + L1M2 LINE L1 5552 5734 -566 1480 155 83 35 chr6 28880320 28880610 -153534632 - AluSg SINE Alu -6 304 1 938 151 102 15 chr6 28880610 28880657 -153534585 + L1M2 LINE L1 5734 5775 -525 271 203 40 40 chr6 28880849 28881026 -153534216 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 306 0 0 0 chr6 28881373 28881407 -153533835 + (TG)n Simple_repeat Simple_repeat 2 35 0 7681 98 23 7 chr6 28881841 28882904 -153532338 - HSMAR1 DNA Mariner 0 1287 208 2349 65 10 3 chr6 28882904 28883195 -153532047 + AluSp SINE Alu 1 293 -20 587 107 0 0 chr6 28883261 28883336 -153531906 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 871 108 8 0 chr6 28883535 28883664 -153531578 - AluSp/q SINE Alu -12 301 172 4212 48 21 0 chr6 28884281 28884761 -153530481 + LTR2B LTR ERV1 1 490 0 2165 81 11 0 chr6 28885898 28886171 -153529071 + AluSg SINE Alu 5 280 -30 299 272 19 0 chr6 28886192 28886267 -153528975 + GA-rich Low_complexity Low_complexity 2 81 -25 2048 138 7 0 chr6 28886267 28886572 -153528670 + AluSq SINE Alu 1 307 -6 299 272 19 0 chr6 28886572 28886599 -153528643 + GA-rich Low_complexity Low_complexity 81 106 0 417 251 79 23 chr6 28886781 28886996 -153528246 - L1M4 LINE L1 -919 5227 5001 204 125 0 0 chr6 28887059 28887091 -153528151 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 381 349 96 65 chr6 28888493 28888911 -153526331 + L2 LINE L2 2836 3266 -6 612 82 0 0 chr6 28889802 28889875 -153525367 + tRNA-Val-GTG tRNA tRNA 1 73 -3 316 353 0 8 chr6 28890949 28891071 -153524171 + L2 LINE L2 2679 2799 -515 184 189 156 90 chr6 28891221 28891343 -153523899 + L2 LINE L2 2827 2956 -316 2121 128 3 0 chr6 28891818 28892122 -153523120 - AluSx SINE Alu -7 305 1 573 66 0 26 chr6 28892138 28892214 -153523028 - L1PA7 LINE L1 -4 6150 6077 258 285 77 50 chr6 28892222 28892443 -153522799 + L1MC4a LINE L1 5792 6018 -1790 554 82 0 0 chr6 28893068 28893141 -153522101 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 204 40 0 0 chr6 28893279 28893304 -153521938 + (TTC)n Simple_repeat Simple_repeat 2 26 0 303 49 0 0 chr6 28893692 28893733 -153521509 + (TG)n Simple_repeat Simple_repeat 2 42 0 316 294 34 17 chr6 28894141 28894260 -153520982 + MIR SINE MIR 116 236 -26 659 42 0 0 chr6 28894609 28894681 -153520561 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 1224 220 90 51 chr6 28895891 28896323 -153518919 + Charlie2b DNA MER1_type 819 1267 -1515 1099 214 78 43 chr6 28896322 28896695 -153518547 + Charlie2b DNA MER1_type 2079 2464 -318 * 750 24 0 0 chr6 28897172 28897254 -153517988 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 352 221 76 15 chr6 28897723 28897854 -153517388 + L1MC5 LINE L1 7755 7893 -68 2165 106 3 3 chr6 28897875 28898178 -153517064 - AluSx SINE Alu -9 303 1 3383 248 65 52 chr6 28898197 28899113 -153516129 - L1MC4 LINE L1 -10 8032 7090 2214 105 0 25 chr6 28899113 28899428 -153515814 + AluSg SINE Alu 1 307 -3 3383 248 65 52 chr6 28899428 28899940 -153515302 - L1MC4 LINE L1 -952 7090 6586 2219 86 3 20 chr6 28899942 28900244 -153514998 - AluSp SINE Alu -16 297 1 189 0 0 0 chr6 28900280 28900301 -153514941 + (T)n Simple_repeat Simple_repeat 1 21 0 298 298 10 87 chr6 28900301 28900509 -153514733 - L1MC4a LINE L1 -1269 6539 6348 893 202 179 18 chr6 28900588 28900811 -153514431 - AluY SINE Alu -51 260 2 625 240 159 35 chr6 28900821 28901079 -153514163 - L1MC4a LINE L1 -1780 6028 5739 893 140 53 41 chr6 28901362 28901491 -153513751 + AluJo SINE Alu 1 134 -178 2468 70 3 0 chr6 28901491 28901791 -153513451 + AluSq SINE Alu 1 301 -12 893 140 53 41 chr6 28901791 28901832 -153513410 + AluJo SINE Alu 134 173 -139 884 152 73 6 chr6 28902181 28902345 -153512897 - MER2 DNA MER2_type 0 345 171 529 76 0 0 chr6 28902354 28902420 -153512822 - Charlie3 DNA MER1_type 0 2712 2647 260 98 0 0 chr6 28902418 28902459 -153512783 - Charlie3 DNA MER1_type -2669 41 1 * 971 214 0 0 chr6 28902460 28902628 -153512614 - MER2 DNA MER2_type -177 168 1 563 84 0 0 chr6 28902965 28903036 -153512206 - tRNA-Met-i tRNA tRNA -3 72 2 230 234 62 0 chr6 28903102 28903166 -153512076 + L1ME3 LINE L1 5770 5837 -2205 1644 138 6 77 chr6 28903196 28903530 -153511712 - AluJb SINE Alu 0 312 1 860 224 61 55 chr6 28903548 28903860 -153511382 + L1ME3 LINE L1 5845 6158 -4 224 214 18 18 chr6 28903865 28903921 -153511321 + GA-rich Low_complexity Low_complexity 2 57 0 2600 40 0 0 chr6 28904457 28904758 -153510484 - AluY SINE Alu -10 301 1 278 227 76 0 chr6 28905326 28905392 -153509850 + MER3 DNA MER1_type 41 111 -98 1355 153 33 0 chr6 28905396 28905611 -153509631 + AluJb SINE Alu 87 308 -4 634 200 186 14 chr6 28905611 28905821 -153509421 + MER33 DNA MER1_type 56 301 -23 219 272 246 0 chr6 28906206 28906320 -153508922 - MIR SINE MIR -29 233 92 212 174 0 87 chr6 28906397 28906443 -153508799 + MIR SINE MIR 10 51 -211 4227 132 30 80 chr6 28906470 28907306 -153507936 - L1MA7 LINE L1 -2 6289 5496 451 307 16 0 chr6 28907306 28907433 -153507809 + MIR SINE MIR 47 175 -87 1832 196 23 53 chr6 28907442 28907876 -153507366 + L1ME1 LINE L1 5571 5991 -175 3026 141 57 101 chr6 28912265 28913134 -153502108 + L1MC2 LINE L1 5163 5984 -360 1869 256 49 13 chr6 28913148 28913884 -153501358 + L1MEc LINE L1 1227 2126 -4437 7100 236 50 22 chr6 28913901 28916238 -153499004 + L1ME3A LINE L1 1734 4082 -2133 1737 197 9 6 chr6 28916251 28916596 -153498646 + L1ME3A LINE L1 4759 5104 -1111 616 284 51 37 chr6 28916615 28916911 -153498331 + L1ME3A LINE L1 5716 6015 -224 1145 188 420 2 chr6 28916943 28917476 -153497766 - LTR50 LTR ERVL 0 795 40 669 227 0 15 chr6 28918510 28918642 -153496600 + MER45A DNA AcHobo 45 174 -4 203 325 0 0 chr6 28918746 28918823 -153496419 + T-rich Low_complexity Low_complexity 1 77 0 780 241 103 5 chr6 28918826 28919050 -153496192 + MIR SINE MIR 12 257 -5 2623 43 0 0 chr6 28919660 28919959 -153495283 - AluY SINE Alu -12 299 1 224 286 0 0 chr6 28919985 28920048 -153495194 + T-rich Low_complexity Low_complexity 2 64 0 22 80 0 0 chr6 28920094 28920144 -153495098 + AT_rich Low_complexity Low_complexity 1 50 0 1866 97 0 4 chr6 28920161 28920409 -153494833 - AluSx SINE Alu -3 309 63 24 0 0 0 chr6 28920470 28920494 -153494748 + AT_rich Low_complexity Low_complexity 1 24 0 510 227 140 58 chr6 28921132 28921191 -153494051 - L1ME2 LINE L1 -9 6653 6600 194 0 39 0 chr6 28921191 28921217 -153494025 + (CA)n Simple_repeat Simple_repeat 2 28 0 510 227 140 58 chr6 28921217 28921400 -153493842 - L1ME2 LINE L1 -62 6600 6383 2114 128 26 0 chr6 28921400 28921704 -153493538 - AluSx SINE Alu 0 312 1 510 227 140 58 chr6 28921704 28921738 -153493504 - L1ME2 LINE L1 -279 6383 6353 754 209 70 10 chr6 28921751 28921952 -153493290 - L1ME2 LINE L1 -873 5771 5559 2112 112 7 0 chr6 28921953 28922238 -153493004 - AluSx SINE Alu -11 301 15 2929 226 28 44 chr6 28922238 28923086 -153492156 - L1ME2 LINE L1 -5100 1442 608 318 141 0 0 chr6 28923086 28923143 -153492099 - MLT2C1 LTR ERVL 0 397 350 678 143 18 0 chr6 28925055 28925167 -153490075 + AluJb SINE Alu 199 312 0 29 0 0 0 chr6 28925219 28925248 -153489994 + AT_rich Low_complexity Low_complexity 1 29 0 770 187 0 0 chr6 28925836 28925959 -153489283 + MER49 LTR ERV1 100 222 -701 1064 130 31 0 chr6 28925959 28926120 -153489122 + AluSg/x SINE Alu 131 296 -14 216 0 0 0 chr6 28926120 28926144 -153489098 + (GA)n Simple_repeat Simple_repeat 1 24 0 3774 179 4 35 chr6 28926144 28926878 -153488364 + MER49 LTR ERV1 213 923 0 481 212 45 45 chr6 28926977 28927222 -153488020 + L1ME3A LINE L1 3113 3357 -2789 2140 106 3 0 chr6 28927224 28927550 -153487692 + AluSp SINE Alu 1 327 0 782 270 36 12 chr6 28927554 28927887 -153487355 + L1ME3A LINE L1 3304 3644 -2502 1986 156 7 0 chr6 28928194 28928489 -153486753 - AluSx SINE Alu -15 297 1 426 206 30 6 chr6 28928569 28928686 -153486556 + L1ME3A LINE L1 6051 6165 -5 649 313 61 14 chr6 28928727 28929318 -153485924 + L1ME3A LINE L1 4412 5030 -1116 * 1151 271 57 25 chr6 28929316 28929829 -153485413 + L1ME3A LINE L1 5629 6157 -13 989 221 113 7 chr6 28930315 28930738 -153484504 - MLT1F LTR MaLR 0 542 3 1988 154 3 0 chr6 28930944 28931242 -153484000 - AluSq SINE Alu -14 299 1 231 88 0 0 chr6 28931521 28931555 -153483687 + (T)n Simple_repeat Simple_repeat 1 34 0 650 0 0 0 chr6 28932161 28932233 -153483009 - tRNA-Met-i tRNA tRNA -3 72 1 1774 174 62 30 chr6 28932646 28933084 -153482158 + Charlie1 DNA MER1_type 1585 2036 -725 419 136 23 0 chr6 28933103 28933191 -153482051 - L1MA5 LINE L1 -7 6293 6204 2061 110 0 7 chr6 28933762 28934054 -153481188 + AluSx SINE Alu 1 290 -22 621 66 0 0 chr6 28934163 28934239 -153481003 - tRNA-Lys-AAA tRNA tRNA 0 76 1 2334 65 6 46 chr6 28934610 28934933 -153480309 + AluSx SINE Alu 1 310 -2 748 233 176 17 chr6 28935107 28935567 -153479675 - Charlie2 DNA MER1_type -34 2828 2296 327 194 0 15 chr6 28935875 28935942 -153479300 - tRNA-Met-i tRNA tRNA -9 66 1 351 255 191 13 chr6 28936522 28936679 -153478563 - MER69 DNA AcHobo -875 351 167 357 289 67 47 chr6 28936695 28936844 -153478398 + L2 LINE L2 2911 3062 -210 1336 263 198 28 chr6 28936979 28937057 -153478185 + L2 LINE L2 2197 2260 -1053 2156 118 0 20 chr6 28937057 28937362 -153477880 - AluSx SINE Alu -13 299 1 1336 263 198 28 chr6 28937362 28938245 -153476997 + L2 LINE L2 2260 3310 -3 327 323 141 5 chr6 28938696 28938894 -153476348 - L1MC4a LINE L1 -1629 6179 5955 285 270 0 0 chr6 28938902 28938976 -153476266 - L1MC4a LINE L1 -1911 5897 5824 2222 121 0 0 chr6 28939194 28939500 -153475742 - AluSx SINE Alu -6 306 1 1008 261 122 30 chr6 28939560 28939938 -153475304 - L1ME3A LINE L1 -220 5950 5513 2282 49 39 0 chr6 28939938 28940222 -153475020 + AluY SINE Alu 1 295 -16 1008 261 122 30 chr6 28940222 28940345 -153474897 - L1ME3A LINE L1 -657 5513 5403 815 263 53 88 chr6 28940357 28940903 -153474339 + MLT1G1 LTR MaLR 1 594 -1 2360 69 3 7 chr6 28940903 28941207 -153474035 - AluY SINE Alu -8 303 1 254 253 70 21 chr6 28941230 28941410 -153473832 - L1ME3A LINE L1 -772 5374 5188 2225 96 0 0 chr6 28941431 28941766 -153473476 - AluSc SINE Alu 0 335 1 572 258 57 18 chr6 28942057 28942340 -153472902 - L1ME3A LINE L1 -1336 4810 4517 2078 121 0 13 chr6 28942360 28942665 -153472577 - AluSq SINE Alu -12 301 1 22 56 0 0 chr6 28942667 28942703 -153472539 + AT_rich Low_complexity Low_complexity 1 36 0 390 277 102 7 chr6 28942718 28942855 -153472387 - MIR SINE MIR -52 210 61 2296 98 0 0 chr6 28942867 28943162 -153472080 - AluSg SINE Alu -15 295 1 919 190 0 13 chr6 28943761 28943919 -153471323 - AluJb SINE Alu -156 156 1 1849 213 5 11 chr6 28944749 28945116 -153470126 - MLT1A1 LTR MaLR 0 365 1 323 158 49 49 chr6 28945201 28945283 -153469959 - L1MCa LINE L1 -4350 2076 1995 25 0 0 0 chr6 28946149 28946174 -153469068 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr6 28946209 28946253 -153468989 + AT_rich Low_complexity Low_complexity 1 44 0 1815 168 0 43 chr6 28946362 28946684 -153468558 + AluJb SINE Alu 1 308 -4 8879 197 68 83 chr6 28946693 28948614 -153466628 + L1MA4 LINE L1 1 1867 -4982 2313 114 3 0 chr6 28948614 28948913 -153466329 + AluSg SINE Alu 1 300 -10 8879 197 68 83 chr6 28948913 28949898 -153465344 + L1MA4 LINE L1 1867 2865 -3984 12949 173 37 14 chr6 28949902 28951524 -153463718 + L1MA4 LINE L1 3098 4680 -2322 3108 103 64 93 chr6 28951524 28952146 -153463096 + LTR14B LTR ERVK 5 608 0 12949 173 37 14 chr6 28952146 28954156 -153461086 + L1MA4 LINE L1 4680 6824 -178 583 196 0 0 chr6 28954156 28954263 -153460979 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 3369 128 73 59 chr6 28954254 28954995 -153460247 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 608 153 125 0 chr6 28954995 28955139 -153460103 + L1MA4 LINE L1 6821 6982 -20 378 313 28 0 chr6 28955164 28955308 -153459934 - L1ME LINE L1 -424 5697 5550 355 230 86 29 chr6 28956083 28956222 -153459020 - L1ME3A LINE L1 -1700 4446 4300 620 298 0 18 chr6 28957135 28957303 -153457939 - MIR3 SINE MIR -34 174 10 479 261 83 57 chr6 28960194 28960424 -153454818 - HAL1 LINE L1 -1744 763 528 215 77 0 26 chr6 28960546 28960585 -153454657 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 231 278 243 6 chr6 28960873 28961042 -153454200 - MIR SINE MIR -4 258 50 1612 99 0 5 chr6 28961210 28961421 -153453821 - AluSp SINE Alu -16 297 88 197 377 29 0 chr6 28962200 28962269 -153452973 - MIR SINE MIR -189 73 3 1550 150 139 4 chr6 28962720 28962993 -153452249 + AluJb SINE Alu 2 311 -1 21 0 0 0 chr6 28963015 28963036 -153452206 + AT_rich Low_complexity Low_complexity 1 21 0 2059 98 7 59 chr6 28963160 28963467 -153451775 - AluSx SINE Alu -21 291 1 768 248 119 0 chr6 28963545 28963755 -153451487 + MIR SINE MIR 18 252 -10 755 343 28 71 chr6 28964352 28964541 -153450701 - L2 LINE L2 -12 3260 3065 2297 107 0 0 chr6 28964541 28964831 -153450411 + AluSx SINE Alu 1 290 -22 755 343 28 71 chr6 28964831 28965524 -153449718 - L2 LINE L2 -207 3065 2412 1757 183 6 6 chr6 28965685 28965996 -153449246 - AluSx SINE Alu -1 311 1 300 303 30 26 chr6 28966008 28966242 -153449000 + L1MEc LINE L1 1842 2076 -4320 304 225 44 148 chr6 28966429 28966611 -153448631 - L2 LINE L2 -3 3310 3148 1944 133 127 8 chr6 28966612 28966974 -153448268 - MSTA LTR MaLR -2 426 22 * 5595 177 90 44 chr6 28966972 28968383 -153446859 + MER52A LTR ERV1 217 1755 0 206 31 0 31 chr6 28969083 28969115 -153446127 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 733 200 130 0 chr6 28969469 28969654 -153445588 - MER3 DNA MER1_type 0 209 1 2082 169 31 78 chr6 28969785 28969977 -153445265 + MSTB1 LTR MaLR 5 204 -228 2143 93 4 0 chr6 28969977 28970257 -153444985 - AluSc SINE Alu -28 281 1 2082 169 31 78 chr6 28970257 28970513 -153444729 + MSTB1 LTR MaLR 204 432 0 186 235 59 59 chr6 28970656 28970724 -153444518 + L2 LINE L2 3242 3309 -4 548 307 129 59 chr6 28970782 28971186 -153444056 - L2 LINE L2 -17 3296 2865 259 403 28 7 chr6 28971311 28971455 -153443787 + MIR3 SINE MIR 3 149 -59 1051 170 22 0 chr6 28971564 28971746 -153443496 + MER5A DNA MER1_type 1 186 -3 2424 65 0 40 chr6 28971860 28972183 -153443059 - AluY SINE Alu -1 310 1 606 230 143 80 chr6 28972255 28972555 -153442687 + MER20B DNA MER1_type 79 397 -386 571 152 76 58 chr6 28972580 28972751 -153442491 + MER20B DNA MER1_type 610 783 0 435 207 240 40 chr6 28972753 28972903 -153442339 - MIR SINE MIR -61 201 22 1136 224 88 46 chr6 28972907 28973341 -153441901 + L1MD2 LINE L1 5662 6113 -246 342 0 0 0 chr6 28973562 28973600 -153441642 + (TG)n Simple_repeat Simple_repeat 2 39 0 279 229 86 0 chr6 28974748 28974818 -153440424 - MIR SINE MIR 0 262 187 509 187 66 42 chr6 28974818 28974941 -153440301 + LTR65 LTR ERV1 1 130 -539 2215 114 71 0 chr6 28974941 28975293 -153439949 - MER51B LTR ERV1 0 377 1 509 187 66 42 chr6 28975293 28975335 -153439907 + LTR65 LTR ERV1 130 170 -499 365 171 29 0 chr6 28975443 28975513 -153439729 - MIR SINE MIR -109 153 82 238 323 177 0 chr6 28975549 28975645 -153439597 - MIR SINE MIR -76 132 20 1493 111 27 13 chr6 28975828 28976053 -153439189 + AluSg/x SINE Alu 77 304 -6 222 193 18 18 chr6 28976140 28976197 -153439045 + MIR SINE MIR 172 228 -34 487 122 89 0 chr6 28976532 28976622 -153438620 + MER4A LTR ERV1 1 98 -566 1508 146 11 75 chr6 28976622 28976991 -153438251 + MER4A LTR ERV1 261 664 0 273 246 0 15 chr6 28977081 28977146 -153438096 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 453 273 31 8 chr6 28977303 28977431 -153437811 - L1ME2 LINE L1 -36 6128 5998 3395 72 0 20 chr6 28977432 28977889 -153437353 - LTR7 LTR ERV1 -2 448 1 763 201 87 7 chr6 28977971 28978120 -153437122 + FRAM SINE Alu 1 160 -16 2361 144 28 104 chr6 28978735 28979243 -153435999 + L1MCa LINE L1 299 767 -5659 519 248 64 0 chr6 28979243 28979352 -153435890 + AluJ SINE Alu 54 169 -143 7021 128 201 26 chr6 28979355 28980798 -153434444 - pTR5 LTR ERV1 0 2438 743 779 154 8 0 chr6 28980798 28980921 -153434321 + AluJ SINE Alu 166 289 -23 2355 90 0 7 chr6 28980927 28981227 -153434015 + AluSx SINE Alu 1 298 -14 2058 90 3 68 chr6 28981227 28981549 -153433693 + AluSq SINE Alu 1 301 -12 6286 175 77 59 chr6 28981569 28982014 -153433228 + L1MCa LINE L1 762 1198 -5228 2151 138 0 0 chr6 28982014 28982318 -153432924 + AluSx SINE Alu 1 304 -8 6286 175 77 59 chr6 28982318 28982598 -153432644 + L1MCa LINE L1 1198 1472 -4954 1590 209 24 34 chr6 28982598 28982976 -153432266 - MLT1A2 LTR MaLR 0 374 1 6286 175 77 59 chr6 28982976 28983358 -153431884 + L1MCa LINE L1 1472 1846 -4580 2367 109 0 0 chr6 28983358 28983660 -153431582 + AluSx SINE Alu 1 302 -10 6286 175 77 59 chr6 28983660 28983912 -153431330 + L1MCa LINE L1 1846 2092 -4334 2368 88 7 0 chr6 28983912 28984208 -153431034 + AluSq SINE Alu 1 298 -15 6286 175 77 59 chr6 28984208 28985354 -153429888 + L1MCa LINE L1 2092 3316 -3110 3949 177 77 34 chr6 28985343 28987062 -153428180 + L1MB4 LINE L1 4395 6174 -6 * 257 301 96 51 chr6 28987562 28987718 -153427524 + MER5A DNA MER1_type 27 189 0 768 144 14 14 chr6 28988558 28988704 -153426538 - MIR SINE MIR -22 240 95 2055 81 30 0 chr6 28988706 28988977 -153426265 + AluSq SINE Alu 1 279 -34 2051 86 0 11 chr6 28990378 28990646 -153424596 - AluSq SINE Alu -10 303 39 188 389 53 0 chr6 28991225 28991338 -153423904 - MIR3 SINE MIR -48 160 42 1972 128 14 11 chr6 28991434 28991716 -153423526 - AluSx SINE Alu -17 295 13 403 293 96 6 chr6 28991975 28992132 -153423110 + MIR SINE MIR 49 219 -43 2082 145 129 0 chr6 28992360 28992739 -153422503 + MSTA LTR MaLR 1 428 0 9273 152 31 15 chr6 28992741 28994364 -153420878 + MSTA-int LTR MaLR 3 1651 0 2260 155 89 0 chr6 28994364 28994757 -153420485 + MSTA LTR MaLR 1 428 0 1775 193 242 22 chr6 28995299 28995619 -153419623 - MER20B DNA MER1_type -61 722 474 1996 161 0 7 chr6 28995619 28995923 -153419319 + AluJb SINE Alu 1 302 -10 1775 193 242 22 chr6 28995923 28996194 -153419048 - MER20B DNA MER1_type -309 474 1 2334 127 22 103 chr6 28996235 28996699 -153418543 - MSTB LTR MaLR 0 426 1 2248 107 0 0 chr6 28996813 28997102 -153418140 - AluSx SINE Alu -19 293 5 2518 60 0 3 chr6 28997753 28998053 -153417189 + AluY SINE Alu 1 299 -12 214 306 157 9 chr6 28998288 28998396 -153416846 - MER5A DNA MER1_type -30 159 36 191 77 0 77 chr6 28998396 28998435 -153416807 + (TATG)n Simple_repeat Simple_repeat 3 38 0 333 246 141 7 chr6 28998765 28998907 -153416335 + MIR3 SINE MIR 42 202 -6 212 197 0 28 chr6 29000756 29000827 -153414415 + CT-rich Low_complexity Low_complexity 4 72 0 1509 194 49 7 chr6 29001777 29002065 -153413177 - AluJo SINE Alu -9 303 4 362 250 21 0 chr6 29002974 29003070 -153412172 + MIR SINE MIR 164 261 -1 2180 118 89 124 chr6 29003722 29003911 -153411331 + Tigger3b DNA MER2_type 1 195 -2833 2135 120 7 0 chr6 29003911 29004203 -153411039 + AluSx SINE Alu 1 294 -18 2180 118 89 124 chr6 29004203 29004531 -153410711 + Tigger3b DNA MER2_type 195 500 -731 4005 176 40 1 chr6 29004539 29005185 -153410057 - HERVL18 LTR ERVL -2659 3388 2718 1441 162 11 2 chr6 29005182 29005456 -153409786 - HERVL18 LTR ERVL -3595 2452 2119 * 1062 164 14 19 chr6 29005455 29005803 -153409439 - HERVL18 LTR ERVL -4237 1810 1401 * 935 213 18 0 chr6 29005845 29006014 -153409228 - HERVL18 LTR ERVL -5382 665 494 * 1502 189 11 11 chr6 29005999 29006284 -153408958 - HERVL18 LTR ERVL -5744 303 19 3147 124 76 44 chr6 29006305 29006900 -153408342 - LTR18B LTR ERVL 0 614 1 2636 55 0 3 chr6 29008393 29008705 -153406537 + AluY SINE Alu 1 311 0 2958 125 31 37 chr6 29008867 29009380 -153405862 + Tigger3b DNA MER2_type 723 1232 0 2170 113 0 0 chr6 29009717 29010008 -153405234 - AluSx SINE Alu -21 291 1 858 176 80 122 chr6 29010183 29010535 -153404707 - MLT1A2 LTR MaLR -12 362 26 1532 121 9 0 chr6 29011523 29011738 -153403504 - LTR62 LTR ERVK -2 717 501 1421 94 146 0 chr6 29011738 29011950 -153403292 - MER4E LTR ERV1 0 779 537 706 188 0 0 chr6 29011953 29012070 -153403172 + FRAM SINE Alu 50 166 -10 2279 80 3 71 chr6 29012131 29012457 -153402785 + AluSp SINE Alu 1 304 -9 602 256 35 42 chr6 29012617 29012902 -153402340 - L1MC5 LINE L1 -33 7928 7646 1666 264 54 34 chr6 29013288 29013910 -153401332 + L2 LINE L2 2491 3131 -182 320 228 24 57 chr6 29014097 29014220 -153401022 + MIR SINE MIR 63 181 -81 371 253 147 0 chr6 29014897 29014992 -153400250 + MIR SINE MIR 11 119 -143 1706 154 104 17 chr6 29014992 29015349 -153399893 - MLT1C LTR MaLR 0 467 80 326 331 39 16 chr6 29015385 29015512 -153399730 + MIR SINE MIR 115 244 -18 181 354 62 0 chr6 29015838 29015934 -153399308 + MIR SINE MIR 40 141 -67 256 250 71 9 chr6 29015997 29016109 -153399133 - MIR SINE MIR -70 192 74 208 330 36 27 chr6 29016767 29016879 -153398363 + MIR3 SINE MIR 82 194 -14 262 239 11 43 chr6 29016910 29017002 -153398240 + L1ME4a LINE L1 5838 5926 -195 390 319 52 0 chr6 29017686 29017934 -153397308 - L1ME LINE L1 -644 5518 5258 22 0 0 0 chr6 29018127 29018149 -153397093 + AT_rich Low_complexity Low_complexity 1 22 0 1928 114 10 33 chr6 29018283 29018582 -153396660 - AluSx SINE Alu -18 294 3 525 44 0 0 chr6 29018704 29018772 -153396470 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 927 264 75 12 chr6 29018800 29019133 -153396109 + L2 LINE L2 2414 2767 -547 233 337 105 11 chr6 29019162 29019352 -153395890 + L2 LINE L2 2946 3153 -160 3541 161 35 5 chr6 29019725 29020585 -153394657 + L1MC1 LINE L1 5396 6326 -7 580 269 92 17 chr6 29020620 29020858 -153394384 + L1MC5 LINE L1 7187 7442 -519 1315 140 5 19 chr6 29020962 29021176 -153394066 + AluJo SINE Alu 1 211 -101 802 215 0 0 chr6 29021179 29021406 -153393836 + AluJb SINE Alu 145 312 0 4681 126 94 122 chr6 29023152 29024568 -153390674 - pTR5 LTR ERV1 0 2438 743 400 252 100 56 chr6 29024569 29024819 -153390423 + L1MC5 LINE L1 7668 7928 -33 463 226 73 0 chr6 29026011 29026135 -153389107 + L1MC4a LINE L1 5410 5542 -2266 256 285 135 34 chr6 29026198 29026405 -153388837 + L1MC4a LINE L1 5805 6032 -1776 369 218 51 0 chr6 29026976 29027054 -153388188 + MER20B DNA MER1_type 56 137 -646 273 333 136 12 chr6 29027110 29027368 -153387874 + L2 LINE L2 2441 2730 -584 215 250 126 50 chr6 29027849 29028009 -153387233 + MIR SINE MIR 1 179 -29 419 181 14 0 chr6 29028249 29028321 -153386921 + MLT1F1 LTR MaLR 137 209 -358 250 164 137 41 chr6 29028860 29028933 -153386309 + LTR33 LTR ERVL 12 91 -430 3167 122 32 21 chr6 29028942 29029473 -153385769 - MER34 LTR ERV1 -5 537 1 1269 213 142 29 chr6 29029543 29029960 -153385282 + MLT1D LTR MaLR 42 505 0 22 0 0 0 chr6 29030659 29030681 -153384561 + AT_rich Low_complexity Low_complexity 1 22 0 1435 172 42 66 chr6 29030999 29031407 -153383835 - LTR52 LTR ERVL -12 409 12 370 228 133 33 chr6 29031759 29031838 -153383404 + L2 LINE L2 2931 3001 -312 1521 256 77 40 chr6 29031838 29032411 -153382831 + MLT1G1 LTR MaLR 1 594 -1 370 228 133 33 chr6 29032411 29032511 -153382731 + L2 LINE L2 3001 3128 -185 2875 146 43 2 chr6 29032511 29033019 -153382223 - L1MB4 LINE L1 0 6180 5652 854 129 35 6 chr6 29033019 29033189 -153382053 + CT-rich Low_complexity Low_complexity 4 178 0 1002 143 0 0 chr6 29033192 29033339 -153381903 - FRAM SINE Alu -7 169 23 4520 199 48 14 chr6 29033341 29034855 -153380387 - L1MB4 LINE L1 -513 5667 4113 600 233 23 0 chr6 29034877 29035006 -153380236 - MER54A LTR ERVL -286 615 484 1204 218 17 70 chr6 29035172 29035344 -153379898 - L1MB4 LINE L1 -2028 4118 3939 2141 108 37 0 chr6 29035344 29035640 -153379602 - AluSx SINE Alu -5 307 1 1204 218 17 70 chr6 29035640 29035870 -153379372 - L1MB4 LINE L1 -2207 3939 3737 189 250 192 29 chr6 29035870 29035974 -153379268 + L2 LINE L2 3121 3241 -72 2124 210 112 19 chr6 29036330 29036849 -153378393 + MLT1E2 LTR MaLR 60 626 0 186 408 75 8 chr6 29037211 29037331 -153377911 + L2 LINE L2 2925 3052 -220 201 289 89 56 chr6 29037630 29037720 -153377522 - L2 LINE L2 -964 2350 2258 333 308 77 0 chr6 29038222 29038313 -153376929 + MER5A DNA MER1_type 8 105 -84 3614 150 89 11 chr6 29038405 29039059 -153376183 + MER44D DNA MER2_type 1 705 0 225 310 70 0 chr6 29039513 29039584 -153375658 - MIR SINE MIR -139 123 48 2472 58 0 6 chr6 29039898 29040210 -153375032 + AluY SINE Alu 1 310 -1 433 284 95 70 chr6 29040352 29040395 -153374847 + MIR SINE MIR 14 54 -208 1669 179 30 3 chr6 29040395 29040691 -153374551 - AluJb SINE Alu -8 304 1 433 284 95 70 chr6 29040691 29040890 -153374352 + MIR SINE MIR 54 262 0 1613 141 94 4 chr6 29041514 29041770 -153373472 + AluJo SINE Alu 1 279 -33 385 199 14 14 chr6 29041771 29041917 -153373325 + GA-rich Low_complexity Low_complexity 1 146 0 1034 96 13 0 chr6 29041932 29042088 -153373154 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 4158 272 76 45 chr6 29042324 29044029 -153371213 + L2 LINE L2 355 2113 -1201 344 185 46 0 chr6 29044036 29044101 -153371141 + L2 LINE L2 2270 2337 -977 1619 228 39 5 chr6 29044123 29044539 -153370703 + L1ME3A LINE L1 5486 5915 -255 1659 184 68 26 chr6 29044539 29044919 -153370323 + MSTD LTR MaLR 1 396 0 4462 241 96 32 chr6 29044926 29046039 -153369203 + MSTD-int LTR MaLR 255 1476 -259 1554 103 0 0 chr6 29046039 29046233 -153369009 + AluSq SINE Alu 1 194 -119 4462 241 96 32 chr6 29046233 29046511 -153368731 + MSTD-int LTR MaLR 1476 1735 0 873 193 97 78 chr6 29046513 29046607 -153368635 + MSTD LTR MaLR 3 94 -302 2422 100 0 0 chr6 29046607 29046918 -153368324 + AluSq SINE Alu 1 311 -2 873 193 97 78 chr6 29046918 29047092 -153368150 + MSTD LTR MaLR 94 276 -120 283 287 47 78 chr6 29047112 29047241 -153368001 + L1ME3A LINE L1 5968 6092 -78 1431 285 112 19 chr6 29047275 29047942 -153367300 + L2 LINE L2 2335 3052 -261 1871 143 13 17 chr6 29048648 29048948 -153366294 + AluJo SINE Alu 1 299 -13 356 203 80 116 chr6 29049353 29049462 -153365780 - MER5B DNA MER1_type -33 145 40 1563 172 57 25 chr6 29049462 29049816 -153365426 + MLT1A1 LTR MaLR 1 365 0 356 203 80 116 chr6 29049816 29049844 -153365398 - MER5B DNA MER1_type -138 40 13 296 319 86 26 chr6 29050220 29050336 -153364906 - MIR3 SINE MIR -36 172 50 2042 157 0 0 chr6 29055152 29055452 -153359790 + AluJb SINE Alu 1 300 -12 476 326 7 0 chr6 29056703 29056841 -153358401 + MIR SINE MIR 124 262 0 180 111 0 0 chr6 29057043 29057070 -153358172 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5284 143 70 33 chr6 29057187 29058558 -153356684 + L1MA5 LINE L1 4904 6296 -4 559 281 54 9 chr6 29058760 29058984 -153356258 + L1MC/D LINE L1 5557 5790 -2018 1480 182 0 16 chr6 29059057 29059315 -153355927 + AluJo SINE Alu 1 254 -58 682 306 71 0 chr6 29059537 29059860 -153355382 + L1MEc LINE L1 36 381 -6015 350 271 21 0 chr6 29059876 29059972 -153355270 + MER63A DNA MER1_type 84 181 -29 509 266 76 22 chr6 29060349 29060626 -153354616 + MER68 LTR ERV1 311 562 0 5062 224 93 53 chr6 29060707 29061380 -153353862 + L1MEc LINE L1 49 694 -5702 2252 88 0 3 chr6 29061380 29061674 -153353568 - AluY SINE Alu -18 293 1 5062 224 93 53 chr6 29061674 29061759 -153353483 + L1MEc LINE L1 694 774 -5622 2270 101 0 7 chr6 29061759 29062056 -153353186 + AluSg SINE Alu 1 295 -15 5062 224 93 53 chr6 29062056 29062252 -153352990 + L1MEc LINE L1 774 961 -5435 1751 38 0 0 chr6 29062252 29062465 -153352777 + L1PA4 LINE L1 5943 6155 0 5062 224 93 53 chr6 29062465 29063132 -153352110 + L1MEc LINE L1 961 1600 -4796 883 206 65 42 chr6 29063132 29063346 -153351896 - MER20 DNA MER1_type 0 219 1 5062 224 93 53 chr6 29063346 29063911 -153351331 + L1MEc LINE L1 1600 2325 -4071 2469 66 0 3 chr6 29063911 29064214 -153351028 + AluY SINE Alu 1 302 -9 580 197 148 0 chr6 29064219 29064341 -153350901 + MLT1A1 LTR MaLR 173 312 -53 285 29 0 0 chr6 29064341 29064375 -153350867 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2436 72 0 3 chr6 29064379 29064686 -153350556 + AluY SINE Alu 1 306 -5 1677 246 93 6 chr6 29064687 29065078 -153350164 + L1MEc LINE L1 2278 2730 -3485 1948 180 102 34 chr6 29065078 29065313 -153349929 + MLT1D LTR MaLR 1 219 -286 294 29 0 0 chr6 29065313 29065348 -153349894 + (GA)n Simple_repeat Simple_repeat 2 36 0 1948 180 102 34 chr6 29065348 29065585 -153349657 + MLT1D LTR MaLR 219 505 0 1677 246 93 6 chr6 29065585 29065733 -153349509 + L1MEc LINE L1 2730 2864 -3351 407 205 24 13 chr6 29065735 29065861 -153349381 + L1MA10 LINE L1 6039 6298 0 2067 113 0 7 chr6 29066490 29066781 -153348461 + AluSg SINE Alu 1 289 -21 2127 230 60 21 chr6 29067474 29068191 -153347051 + L1ME3 LINE L1 5418 6162 0 293 374 35 0 chr6 29068226 29068341 -153346901 + MIR SINE MIR 23 141 -67 2328 97 0 0 chr6 29068537 29068835 -153346407 + AluSg SINE Alu 1 298 -12 200 143 0 0 chr6 29069909 29069937 -153345305 + MIR SINE MIR 219 246 -16 1679 335 143 19 chr6 29070184 29071184 -153344058 + L3 LINE CR1 452 1575 -2 24 32 0 0 chr6 29072320 29072351 -153342891 + GC_rich Low_complexity Low_complexity 1 31 0 2348 69 20 3 chr6 29072546 29072851 -153342391 + AluSg SINE Alu 1 310 0 349 228 73 16 chr6 29072905 29073028 -153342214 + MER112 DNA MER1_type 106 235 -25 2554 55 0 3 chr6 29073031 29073338 -153341904 - AluSx SINE Alu -6 306 1 355 195 0 0 chr6 29073675 29073752 -153341490 + MLT1A1-int LTR MaLR 206 282 -1089 * 4983 147 24 69 chr6 29073747 29074932 -153340310 + L1MC1 LINE L1 5186 6315 -18 1513 188 9 6 chr6 29074948 29075268 -153339974 + MLT1A1-int LTR MaLR 266 586 -785 525 222 24 8 chr6 29075322 29075448 -153339794 - FLAM_C SINE Alu -15 128 1 976 191 12 0 chr6 29075792 29075965 -153339277 + AluJo SINE Alu 113 287 -25 1312 205 94 58 chr6 29076249 29076922 -153338320 - LTR48 LTR ERV1 0 787 1 214 265 0 15 chr6 29076972 29077101 -153338141 + CT-rich Low_complexity Low_complexity 1 127 0 735 12 0 0 chr6 29077988 29078070 -153337172 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 29078850 29078922 -153336320 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 1918 198 82 108 chr6 29079118 29079333 -153335909 + L1MC4 LINE L1 7328 7547 -495 242 65 0 0 chr6 29079333 29079364 -153335878 - HSMAR1 DNA Mariner -1255 32 2 1918 198 82 108 chr6 29079364 29079386 -153335856 + L1MC4 LINE L1 7547 7568 -474 366 23 0 0 chr6 29079386 29079429 -153335813 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1918 198 82 108 chr6 29079429 29079894 -153335348 + L1MC4 LINE L1 7568 8042 0 2337 89 3 0 chr6 29080417 29080719 -153334523 + AluSx SINE Alu 1 303 -9 1877 112 93 0 chr6 29080993 29081262 -153333980 - AluSg SINE Alu -16 294 1 305 335 43 34 chr6 29081263 29081588 -153333654 + L1ME LINE L1 90 417 -5653 3073 256 63 92 chr6 29081900 29082374 -153332868 + L1M4 LINE L1 2839 3326 -2820 225 122 0 0 chr6 29082374 29082415 -153332827 - LTR66 LTR ERVL -172 438 398 3073 256 63 92 chr6 29082415 29082529 -153332713 + L1M4 LINE L1 3326 3442 -2704 2494 84 0 0 chr6 29082529 29082839 -153332403 + AluSx SINE Alu 1 310 -2 3073 256 63 92 chr6 29082839 29083270 -153331972 + L1M4 LINE L1 3442 3884 -2262 6482 76 8 67 chr6 29083270 29084713 -153330529 - SVA Other Other -551 1386 433 3073 256 63 92 chr6 29084713 29084780 -153330462 + L1M4 LINE L1 3884 3951 -2195 5424 67 36 55 chr6 29084780 29085605 -153329637 - SVA Other Other -520 866 57 264 30 0 0 chr6 29085605 29085638 -153329604 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 3073 256 63 92 chr6 29085638 29086137 -153329105 + L1M4 LINE L1 3950 4404 -1742 1658 185 17 20 chr6 29086137 29086434 -153328808 + AluJb SINE Alu 5 300 -12 3073 256 63 92 chr6 29086434 29086760 -153328482 + L1M4 LINE L1 4404 4738 -1408 700 283 48 10 chr6 29086811 29087101 -153328141 + L1M4 LINE L1 4944 5244 -902 623 178 0 0 chr6 29087154 29087255 -153327987 - AluJ/FLAM SINE Alu -210 102 2 2154 118 0 7 chr6 29087263 29087559 -153327683 - AluSg SINE Alu -16 294 1 1052 163 0 11 chr6 29087863 29088047 -153327195 - AluJb SINE Alu -1 311 130 2382 112 0 0 chr6 29088059 29088371 -153326871 - AluSx SINE Alu 0 312 1 2200 88 27 3 chr6 29088409 29088706 -153326536 - AluSx SINE Alu -8 304 1 2297 110 0 0 chr6 29088864 29089173 -153326069 + AluSx SINE Alu 1 309 -3 1093 141 0 0 chr6 29089258 29089414 -153325828 - MLT1B LTR MaLR -234 156 1 2892 258 96 36 chr6 29089415 29091079 -153324163 + L1M4 LINE L1 3502 5264 -882 1831 87 38 8 chr6 29091079 29091343 -153323899 + MLT2A1 LTR ERVL 1 272 -172 392 145 43 14 chr6 29091776 29091845 -153323397 + MER5A DNA MER1_type 3 73 -116 252 136 0 0 chr6 29091862 29091906 -153323336 + MER74B LTR ERVL 1 44 -578 1462 236 38 28 chr6 29091966 29092364 -153322878 + MER74B LTR ERVL 211 612 -10 1977 130 56 0 chr6 29092640 29092924 -153322318 + AluSx SINE Alu 1 300 -12 695 159 0 90 chr6 29092945 29093090 -153322152 - FLAM_C SINE Alu -1 132 1 1263 243 68 19 chr6 29093097 29093521 -153321721 - L1ME3A LINE L1 -6 6164 5720 224 309 7 33 chr6 29094148 29094300 -153320942 + CT-rich Low_complexity Low_complexity 3 150 0 774 12 0 0 chr6 29094990 29095072 -153320170 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 2472 71 13 0 chr6 29095462 29095770 -153319472 + AluSx SINE Alu 1 312 0 814 238 50 0 chr6 29095797 29095999 -153319243 - L1MC4 LINE L1 -514 7528 7317 25 0 0 0 chr6 29096204 29096229 -153319013 + AT_rich Low_complexity Low_complexity 1 25 0 448 260 46 46 chr6 29096440 29096508 -153318734 + L1M4 LINE L1 4363 4430 -1716 2223 112 3 13 chr6 29096508 29096821 -153318421 + AluSg SINE Alu 1 310 0 448 260 46 46 chr6 29096821 29097056 -153318186 + L1M4 LINE L1 4429 4666 -1480 252 197 0 45 chr6 29097133 29097199 -153318043 + L1M4 LINE L1 4695 4757 -1389 31 68 0 0 chr6 29097205 29097264 -153317978 + AT_rich Low_complexity Low_complexity 1 59 0 1564 250 149 9 chr6 29097292 29097728 -153317514 + MLT2F LTR ERVL 18 514 -149 267 143 0 0 chr6 29097750 29097792 -153317450 + MLT2F LTR ERVL 622 663 0 449 246 82 27 chr6 29098058 29098241 -153317001 + L1MEc LINE L1 34 226 -6170 1700 221 97 45 chr6 29098247 29098415 -153316827 + L1MEc LINE L1 2451 2609 -3606 2198 86 10 7 chr6 29098415 29098730 -153316512 - AluSx SINE Alu 0 312 1 1700 221 97 45 chr6 29098730 29099159 -153316083 + L1MEc LINE L1 2609 3079 -3136 828 180 0 0 chr6 29099192 29099320 -153315922 + AluJ SINE Alu 2 129 -183 630 184 9 28 chr6 29099329 29099654 -153315588 + GA-rich Low_complexity Low_complexity 1 318 0 765 165 24 82 chr6 29099656 29099826 -153315416 + AluJ SINE Alu 136 295 -17 1187 255 61 53 chr6 29099831 29100417 -153314825 + L1MEc LINE L1 3117 3677 -2538 403 167 33 0 chr6 29100417 29100507 -153314735 + L1MB3 LINE L1 6087 6179 -4 1187 255 61 53 chr6 29100507 29100722 -153314520 + L1MEc LINE L1 3677 3889 -2326 186 256 128 13 chr6 29100857 29100935 -153314307 + MIR SINE MIR 121 207 -55 261 257 200 7 chr6 29101569 29101709 -153313533 - L1MC/D LINE L1 -1984 5824 5658 774 12 0 0 chr6 29102215 29102297 -153312945 + tRNA-Ser-TCC tRNA tRNA 1 82 -3 676 0 0 0 chr6 29102920 29102992 -153312250 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 891 249 26 25 chr6 29103636 29103899 -153311343 + L1P2 LINE L1 5514 5774 -380 201 284 20 29 chr6 29104058 29104160 -153311082 + CT-rich Low_complexity Low_complexity 1 101 0 748 24 0 0 chr6 29105004 29105086 -153310156 - tRNA-Ser-TCA tRNA tRNA -3 82 1 1481 223 100 33 chr6 29106172 29106602 -153308640 + MLT1C LTR MaLR 6 464 -3 1889 113 44 20 chr6 29106698 29106991 -153308251 - AluSg SINE Alu -10 300 1 327 330 21 31 chr6 29107008 29107199 -153308043 + L1ME4a LINE L1 5640 5828 -293 297 265 132 32 chr6 29107234 29107453 -153307789 + L1ME4a LINE L1 5814 6054 -67 364 266 63 21 chr6 29107609 29107752 -153307490 + HAL1 LINE L1 1 149 -2358 376 274 6 91 chr6 29107766 29107797 -153307445 - MLT1J2 LTR MaLR -41 409 377 2111 50 0 8 chr6 29107797 29108056 -153307186 - AluSp SINE Alu -13 300 44 376 274 6 91 chr6 29108056 29108199 -153307043 - MLT1J2 LTR MaLR -73 377 250 256 341 73 8 chr6 29108188 29108311 -153306931 - MLT1I LTR MaLR -211 198 68 * 530 286 207 57 chr6 29108379 29108545 -153306697 + HAL1 LINE L1 131 271 -2236 2181 95 0 3 chr6 29108545 29108855 -153306387 + AluSg SINE Alu 1 309 0 530 286 207 57 chr6 29108855 29109471 -153305771 + HAL1 LINE L1 271 1031 -1476 456 127 0 0 chr6 29109490 29109553 -153305689 - AluJ/FRAM SINE Alu -26 286 224 215 311 184 0 chr6 29109930 29110033 -153305209 + L2 LINE L2 2215 2336 -978 23 0 0 0 chr6 29110138 29110161 -153305081 + AT_rich Low_complexity Low_complexity 1 23 0 1173 171 47 9 chr6 29110169 29110380 -153304862 + AluJb SINE Alu 87 305 -7 507 249 76 10 chr6 29110380 29110577 -153304665 + HAL1 LINE L1 1079 1288 -1219 2270 93 3 28 chr6 29110614 29110935 -153304307 - AluSp SINE Alu 0 313 1 357 45 15 30 chr6 29110997 29111063 -153304179 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 541 245 31 6 chr6 29111090 29111249 -153303993 + HAL1 LINE L1 1488 1650 -857 278 250 22 0 chr6 29111267 29111359 -153303883 - LTR33A LTR ERVL -17 506 413 588 258 60 56 chr6 29111419 29111671 -153303571 - LTR33A LTR ERVL -269 254 2 670 268 115 14 chr6 29111684 29111893 -153303349 + HAL1 LINE L1 1646 1875 -632 484 251 68 21 chr6 29112038 29112229 -153303013 + HAL1 LINE L1 2078 2277 -230 263 329 82 18 chr6 29112239 29112409 -153302833 - LTR33 LTR ERVL 0 521 341 450 307 68 5 chr6 29112498 29112690 -153302552 - LTR33 LTR ERVL -291 230 27 2013 110 37 17 chr6 29112739 29113039 -153302203 + AluSx SINE Alu 1 306 -6 625 215 157 0 chr6 29113063 29113235 -153302007 - MIR SINE MIR 0 262 64 1289 171 0 13 chr6 29113318 29113552 -153301690 + L1MB5 LINE L1 5910 6140 -34 1209 218 5 9 chr6 29113653 29113873 -153301369 + MER20 DNA MER1_type 1 219 0 261 0 0 0 chr6 29114590 29114619 -153300623 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 199 307 61 83 chr6 29115893 29116121 -153299121 + L2 LINE L2 3012 3234 -38 2895 170 70 29 chr6 29116337 29116752 -153298490 - L1MC3 LINE L1 -49 7736 7288 2074 120 0 0 chr6 29116752 29117058 -153298184 - AluSx SINE Alu 0 306 1 2895 170 70 29 chr6 29117058 29117229 -153298013 - L1MC3 LINE L1 -497 7288 7125 229 79 53 0 chr6 29117312 29117350 -153297892 - L1MD3 LINE L1 -1018 6977 6938 22 0 0 0 chr6 29117356 29117378 -153297864 + AT_rich Low_complexity Low_complexity 1 22 0 708 0 0 0 chr6 29118705 29118777 -153296465 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 304 257 71 86 chr6 29119676 29119816 -153295426 - L1ME3A LINE L1 -285 5885 5748 241 281 16 16 chr6 29120354 29120416 -153294826 - LTR67 LTR ERVL -383 174 113 787 261 25 10 chr6 29120416 29120615 -153294627 - MLT1A2 LTR MaLR 0 374 173 696 205 0 0 chr6 29120876 29120998 -153294244 + AluJb SINE Alu 2 123 -189 38 75 0 0 chr6 29121294 29121374 -153293868 + AT_rich Low_complexity Low_complexity 1 80 0 31 82 0 0 chr6 29121918 29121991 -153293251 + AT_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr6 29122126 29122149 -153293093 + AT_rich Low_complexity Low_complexity 1 23 0 1327 113 49 24 chr6 29122321 29122504 -153292738 - AluSc SINE Alu 0 309 79 291 28 0 0 chr6 29122504 29122540 -153292702 + (TG)n Simple_repeat Simple_repeat 2 37 0 1327 113 49 24 chr6 29122540 29122622 -153292620 - AluSc SINE Alu -230 79 1 217 405 0 0 chr6 29123159 29123327 -153291915 + (TGG)n Simple_repeat Simple_repeat 1 168 0 983 185 0 0 chr6 29124076 29124238 -153291004 + AluSg/x SINE Alu 137 298 -14 545 229 94 24 chr6 29124306 29124374 -153290868 - L1MDa LINE L1 -5969 571 509 450 0 0 0 chr6 29124374 29124424 -153290818 + (TG)n Simple_repeat Simple_repeat 2 51 0 545 229 94 24 chr6 29124424 29124525 -153290717 - L1MDa LINE L1 -6031 509 390 2404 55 0 29 chr6 29124680 29124992 -153290250 + AluY SINE Alu 1 303 -8 2305 81 3 0 chr6 29125028 29125355 -153289887 - AluSp SINE Alu 0 330 3 2396 72 3 3 chr6 29125380 29125686 -153289556 - AluY SINE Alu -5 306 1 2379 89 0 0 chr6 29125786 29126088 -153289154 - AluSg SINE Alu -8 302 1 252 319 29 0 chr6 29126089 29126158 -153289084 - HERV16 LTR ERVL -3434 1562 1492 508 296 44 0 chr6 29126304 29126463 -153288779 - HERV16 LTR ERVL -4830 166 1 529 319 13 22 chr6 29126463 29126695 -153288547 - LTR16B LTR ERVL 0 464 235 381 235 59 0 chr6 29126852 29126937 -153288305 - LTR16A LTR ERVL -354 96 7 29 0 0 0 chr6 29127040 29127069 -153288173 + AT_rich Low_complexity Low_complexity 1 29 0 4400 181 47 21 chr6 29127077 29127555 -153287687 - L1MA9 LINE L1 -38 6274 5810 495 0 0 0 chr6 29127555 29127610 -153287632 + (CA)n Simple_repeat Simple_repeat 2 56 0 4400 181 47 21 chr6 29127610 29128066 -153287176 - L1MA9 LINE L1 -502 5810 5316 4146 168 55 62 chr6 29128101 29128538 -153286704 - L1MA9 LINE L1 -810 5336 4898 5537 59 14 15 chr6 29128538 29129250 -153285992 - SVA Other Other 0 1386 676 4146 168 55 62 chr6 29129250 29129498 -153285744 - L1MA9 LINE L1 -1248 4898 4650 255 61 0 0 chr6 29129498 29129531 -153285711 + (TG)n Simple_repeat Simple_repeat 1 33 0 4146 168 55 62 chr6 29129531 29129884 -153285358 - L1MA9 LINE L1 -1496 4650 4304 678 281 118 30 chr6 29129909 29130578 -153284664 + L1M4 LINE L1 2732 3459 -2687 395 287 13 6 chr6 29130914 29131071 -153284171 - L1MC4a LINE L1 -1956 5852 5695 754 24 0 0 chr6 29131384 29131466 -153283776 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 2040 121 0 0 chr6 29132766 29133046 -153282196 + AluSx SINE Alu 5 284 -28 216 0 0 0 chr6 29133268 29133292 -153281950 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 250 136 0 36 chr6 29133417 29133479 -153281763 + L1MA9 LINE L1 6073 6127 -41 830 153 0 0 chr6 29133485 29133603 -153281639 - FLAM_C SINE Alu -15 118 1 1033 109 69 0 chr6 29133606 29133781 -153281461 + L1MA6 LINE L1 6112 6298 -2 23 54 0 0 chr6 29133968 29134005 -153281237 + AT_rich Low_complexity Low_complexity 1 37 0 2211 84 7 0 chr6 29134234 29134519 -153280723 - AluSc SINE Alu 0 309 23 2099 99 3 7 chr6 29135857 29136140 -153279102 + AluSq SINE Alu 1 282 -31 309 26 0 0 chr6 29136140 29136178 -153279064 + (CA)n Simple_repeat Simple_repeat 1 38 0 280 395 0 18 chr6 29136186 29136300 -153278942 - L2 LINE L2 -22 3250 3139 733 130 0 26 chr6 29136945 29137060 -153278182 + FLAM_A SINE Alu 22 133 -9 2231 93 0 43 chr6 29137301 29137624 -153277618 + AluSx SINE Alu 1 309 -3 413 284 11 103 chr6 29138202 29138244 -153276998 + L1M4 LINE L1 2472 2516 -3630 2322 67 6 29 chr6 29138244 29138559 -153276683 + AluY SINE Alu 1 308 -3 413 284 11 103 chr6 29138559 29138726 -153276516 + L1M4 LINE L1 2516 2655 -3491 1742 124 73 4 chr6 29138726 29139001 -153276241 - AluJb SINE Alu -16 296 3 413 284 11 103 chr6 29139001 29139051 -153276191 + L1M4 LINE L1 2655 2708 -3438 221 0 35 0 chr6 29139053 29139082 -153276160 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1952 81 7 29 chr6 29139227 29139617 -153275625 + AluSp SINE Alu 46 429 0 23 33 0 0 chr6 29139743 29139773 -153275469 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr6 29139911 29139950 -153275292 + (A)n Simple_repeat Simple_repeat 1 39 0 763 12 0 0 chr6 29140951 29141033 -153274209 - tRNA-Ser-TCA tRNA tRNA -3 82 1 432 298 11 11 chr6 29141342 29141520 -153273722 + L1MC4a LINE L1 5695 5872 -1936 283 314 16 16 chr6 29142799 29142920 -153272322 - L1ME4a LINE L1 -226 5895 5775 586 161 0 105 chr6 29143029 29143153 -153272089 + FLAM_C SINE Alu 2 112 -31 254 186 23 128 chr6 29143212 29143256 -153271986 - MER5A DNA MER1_type -1 188 155 2191 78 0 11 chr6 29143256 29143564 -153271678 - AluSc SINE Alu 0 307 3 254 186 23 128 chr6 29143564 29143604 -153271638 - MER5A DNA MER1_type -34 155 112 23 0 0 0 chr6 29143606 29143629 -153271613 + GC_rich Low_complexity Low_complexity 1 23 0 471 250 17 0 chr6 29143633 29143749 -153271493 - MER5A DNA MER1_type -65 124 7 788 0 0 0 chr6 29144865 29144947 -153270295 + tRNA-Ser-TCA tRNA tRNA 1 82 -3 203 183 0 146 chr6 29145240 29145322 -153269920 - MIR SINE MIR -71 191 122 210 190 86 35 chr6 29145599 29145657 -153269585 - MIR SINE MIR -110 98 38 375 23 0 0 chr6 29145869 29145913 -153269329 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 183 80 0 0 chr6 29146261 29146286 -153268956 + (A)n Simple_repeat Simple_repeat 1 25 0 1018 162 68 43 chr6 29146476 29146710 -153268532 + AluJb SINE Alu 1 240 -72 247 150 0 0 chr6 29146764 29146804 -153268438 + U2 snRNA snRNA 1 40 -148 685 14 0 0 chr6 29146928 29147000 -153268242 - tRNA-Gln-CAG tRNA tRNA -3 72 1 1454 67 0 0 chr6 29147844 29148023 -153267219 + AluY SINE Alu 133 311 0 613 299 74 44 chr6 29148351 29148364 -153266878 + L1M4 LINE L1 2476 2487 -3659 2246 61 6 96 chr6 29148364 29148707 -153266535 + AluSx SINE Alu 1 312 0 613 299 74 44 chr6 29148707 29149398 -153265844 + L1M4 LINE L1 2487 3201 -2945 956 150 75 6 chr6 29149421 29149594 -153265648 - L1MB3 LINE L1 -3 6180 5996 379 232 18 18 chr6 29149621 29149733 -153265509 + L1M4 LINE L1 4616 4727 -1419 367 309 46 21 chr6 29149866 29150060 -153265182 + L1M4 LINE L1 4931 5129 -1017 568 245 67 46 chr6 29150061 29150343 -153264899 - HAL1 LINE L1 -1165 1342 1055 262 270 12 62 chr6 29150378 29150497 -153264745 + L1MDa LINE L1 27 587 -5943 2241 192 46 94 chr6 29150540 29151469 -153263773 + L1MD2 LINE L1 4561 5424 -742 1178 219 84 81 chr6 29151470 29151626 -153263616 + L1MD2 LINE L1 5709 5863 -496 2398 71 0 0 chr6 29151626 29151923 -153263319 - AluY SINE Alu -14 297 1 1178 219 84 81 chr6 29151923 29152172 -153263070 + L1MD2 LINE L1 5863 6115 -244 740 37 0 0 chr6 29152589 29152671 -153262571 - tRNA-Ser-TCC tRNA tRNA -3 82 1 2147 110 0 30 chr6 29153909 29154210 -153261032 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr6 29154213 29154236 -153261006 + AT_rich Low_complexity Low_complexity 1 23 0 2328 99 3 0 chr6 29154656 29154968 -153260274 - AluSp SINE Alu 0 313 1 2290 88 0 22 chr6 29154994 29155313 -153259929 + AluSp SINE Alu 2 313 0 1345 220 13 27 chr6 29155469 29155769 -153259473 - MER90 LTR ERV1 0 614 319 2169 104 0 13 chr6 29156004 29156312 -153258930 - AluSx SINE Alu -8 304 1 1890 87 56 31 chr6 29156502 29156790 -153258452 - AluSc SINE Alu -14 295 1 2285 98 0 3 chr6 29158731 29159037 -153256205 - AluSx SINE Alu -7 305 1 213 204 0 0 chr6 29159095 29159141 -153256101 - MIR SINE MIR -102 106 70 2325 97 0 3 chr6 29160227 29160538 -153254704 - AluSg SINE Alu 0 310 1 956 155 77 0 chr6 29160929 29161084 -153254158 - MER21B LTR ERV1 -373 490 324 243 28 0 0 chr6 29161113 29161149 -153254093 - Alu SINE Alu 0 302 267 536 34 0 159 chr6 29161360 29161448 -153253794 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 229 196 0 20 chr6 29162173 29162224 -153253018 + LTR66 LTR ERVL 390 439 -171 2341 45 0 28 chr6 29162612 29162937 -153252305 + AluY SINE Alu 1 317 0 256 317 70 11 chr6 29163197 29163383 -153251859 - L1M4 LINE L1 -1273 4873 4677 23 54 0 0 chr6 29163475 29163512 -153251730 + AT_rich Low_complexity Low_complexity 1 37 0 1868 149 27 10 chr6 29163588 29163883 -153251359 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr6 29164105 29164133 -153251109 + AT_rich Low_complexity Low_complexity 1 28 0 571 168 65 0 chr6 29164228 29164335 -153250907 + MLT2B1 LTR ERVL 1 114 -406 2133 116 3 26 chr6 29166168 29166479 -153248763 + AluSx SINE Alu 2 305 -7 1961 140 4 0 chr6 29166794 29167073 -153248169 + AluSx SINE Alu 1 280 -32 24 67 0 0 chr6 29167193 29167238 -153248004 + AT_rich Low_complexity Low_complexity 1 45 0 2665 91 19 38 chr6 29167243 29167678 -153247564 + MER4A LTR ERV1 1 443 -221 4063 131 22 5 chr6 29167678 29168302 -153246940 + MER41B LTR ERV1 1 635 0 2665 91 19 38 chr6 29168302 29168338 -153246904 + MER4A LTR ERV1 443 478 -186 2341 88 0 26 chr6 29168338 29168644 -153246598 + AluSp SINE Alu 1 298 -15 2665 91 19 38 chr6 29168644 29168775 -153246467 + MER4A LTR ERV1 478 660 -4 24 0 0 0 chr6 29169040 29169064 -153246178 + AT_rich Low_complexity Low_complexity 1 24 0 1230 202 55 87 chr6 29169073 29169420 -153245822 + MER58B DNA MER1_type 1 336 -5 1964 130 4 0 chr6 29169474 29169778 -153245464 + AluSx SINE Alu 5 309 0 522 322 81 31 chr6 29169820 29170428 -153244814 + HAL1b LINE L1 187 824 -524 778 213 85 69 chr6 29170660 29170958 -153244284 + MER58 DNA MER1_type 864 1156 -1264 2035 136 0 19 chr6 29170958 29171266 -153243976 + AluSx SINE Alu 1 302 -10 778 213 85 69 chr6 29171266 29171361 -153243881 + MER58 DNA MER1_type 1156 2417 -3 2088 159 138 56 chr6 29171807 29172064 -153243178 + MLT1D LTR MaLR 1 236 -269 2281 106 0 10 chr6 29172064 29172376 -153242866 + AluSg SINE Alu 1 309 -1 2088 159 138 56 chr6 29172376 29172583 -153242659 + MLT1D LTR MaLR 236 503 -2 1038 185 110 15 chr6 29172638 29172838 -153242404 - MER20 DNA MER1_type 0 219 1 239 196 59 147 chr6 29173446 29173548 -153241694 - L2 LINE L2 0 3313 3221 1202 208 17 0 chr6 29173565 29173796 -153241446 - MER90 LTR ERV1 0 614 380 897 96 0 0 chr6 29173796 29173921 -153241321 - AluY SINE Alu -12 299 175 1265 101 5 53 chr6 29173931 29174139 -153241103 + AluY SINE Alu 114 311 0 2045 127 0 13 chr6 29174167 29174467 -153240775 - AluSx SINE Alu -16 296 1 585 97 0 0 chr6 29175244 29175316 -153239926 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 2575 36 0 55 chr6 29176206 29176535 -153238707 + AluY SINE Alu 1 311 0 2259 114 0 0 chr6 29176719 29177027 -153238215 + AluSx SINE Alu 1 308 -4 275 306 0 12 chr6 29177258 29177343 -153237899 + CT-rich Low_complexity Low_complexity 2 85 0 180 0 0 0 chr6 29177678 29177698 -153237544 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 262 210 32 0 chr6 29177868 29177930 -153237312 - tRNA-Met-i tRNA tRNA -9 66 3 3963 196 25 28 chr6 29178711 29179528 -153235714 + HERVL74 LTR ERVL 1283 2096 -3589 2213 109 0 0 chr6 29179534 29179828 -153235414 + AluSq SINE Alu 1 294 -19 484 289 57 19 chr6 29180049 29180260 -153234982 + L1MC/D LINE L1 5606 5824 -1984 1367 168 0 22 chr6 29180260 29180492 -153234750 + AluJo SINE Alu 1 227 -85 253 272 72 8 chr6 29180988 29181113 -153234129 + LTR37B LTR ERV1 1 133 -335 304 217 14 29 chr6 29181166 29181306 -153233936 + LTR37A LTR ERV1 115 259 -209 703 113 0 0 chr6 29181326 29181455 -153233787 - AluSg/x SINE Alu 0 315 187 1501 51 4 146 chr6 29181456 29181709 -153233533 - AluSg SINE Alu -93 217 1 2160 78 7 24 chr6 29182209 29182502 -153232740 + AluSp SINE Alu 1 288 -25 29 0 0 0 chr6 29182502 29182531 -153232711 + AT_rich Low_complexity Low_complexity 1 29 0 606 28 0 0 chr6 29182633 29182705 -153232537 - tRNA-Asp-GAC tRNA tRNA -3 72 1 250 270 111 16 chr6 29182978 29183104 -153232138 + L2 LINE L2 2947 3084 -188 1707 227 82 2 chr6 29183408 29183835 -153231407 - MLT1C LTR MaLR -6 461 1 690 271 22 4 chr6 29184138 29184367 -153230875 + L1M4 LINE L1 4479 4711 -1435 2122 125 0 3 chr6 29184616 29184913 -153230329 + AluSq SINE Alu 1 296 -17 492 287 41 28 chr6 29185199 29185387 -153229855 - LTR33A LTR ERVL -299 222 29 481 348 49 52 chr6 29185546 29185874 -153229368 - LTR33A LTR ERVL -196 327 1 385 259 80 70 chr6 29186082 29186579 -153228663 + L1M4 LINE L1 5270 5761 -413 2252 104 3 3 chr6 29186793 29187101 -153228141 + AluSp SINE Alu 1 308 -5 2559 48 0 6 chr6 29187242 29187553 -153227689 + AluY SINE Alu 1 309 -2 678 298 146 22 chr6 29187628 29187997 -153227245 - LTR16A LTR ERVL -6 444 30 299 311 34 14 chr6 29188154 29188302 -153226940 + L1P LINE L1 4878 5028 -1118 1693 246 101 23 chr6 29188526 29189131 -153226111 + L1MC4a LINE L1 5255 5906 -1902 426 149 24 30 chr6 29189143 29189311 -153225931 + (TA)n Simple_repeat Simple_repeat 2 168 0 684 257 110 50 chr6 29189353 29189411 -153225831 + L1MC4a LINE L1 5902 5955 -1853 1974 94 4 0 chr6 29189411 29189665 -153225577 + AluSg SINE Alu 3 257 -53 270 81 0 0 chr6 29189670 29189707 -153225535 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 684 257 110 50 chr6 29189707 29189927 -153225315 + L1MC4a LINE L1 5958 6223 -1585 2206 126 7 0 chr6 29189927 29190237 -153225005 + AluSq SINE Alu 1 312 -1 684 257 110 50 chr6 29190237 29190387 -153224855 + L1MC4a LINE L1 6223 6363 -1445 651 27 0 0 chr6 29190990 29191063 -153224179 - tRNA-Lys-AAA tRNA tRNA -3 73 1 651 0 0 0 chr6 29191997 29192069 -153223173 - tRNA-Met-i tRNA tRNA -3 72 1 288 130 0 0 chr6 29192355 29192401 -153222841 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 704 280 63 109 chr6 29192881 29193402 -153221840 + MER45C DNA AcHobo 3 499 -454 513 216 0 0 chr6 29193410 29193512 -153221730 + MER45C DNA AcHobo 852 953 0 2251 95 3 25 chr6 29193607 29193922 -153221320 + AluSg SINE Alu 1 308 -2 1901 164 50 70 chr6 29194165 29194640 -153220602 + MER31B LTR ERV1 1 466 0 22 56 0 0 chr6 29194659 29194695 -153220547 + AT_rich Low_complexity Low_complexity 1 36 0 2280 116 0 0 chr6 29194740 29195051 -153220191 - AluSq SINE Alu 0 313 3 2236 110 0 16 chr6 29195095 29195412 -153219830 - AluSx SINE Alu 0 312 1 754 113 9 0 chr6 29195588 29195694 -153219548 + U6 snRNA snRNA 1 107 0 323 176 35 120 chr6 29195737 29195792 -153219450 - MER5B DNA MER1_type 0 178 120 1810 159 8 34 chr6 29195792 29195897 -153219345 + MER2 DNA MER2_type 2 108 -236 3479 191 52 64 chr6 29195897 29196878 -153218364 - LTR5 LTR ERVK 0 969 1 1810 159 8 34 chr6 29196878 29197124 -153218118 + MER2 DNA MER2_type 108 344 0 323 176 35 120 chr6 29197124 29197210 -153218032 - MER5B DNA MER1_type -58 120 49 251 253 118 39 chr6 29197942 29198120 -153217122 + LTR37B LTR ERV1 7 198 -270 381 226 65 8 chr6 29198210 29198334 -153216908 + LTR37A LTR ERV1 276 406 -20 2292 86 3 26 chr6 29198655 29198968 -153216274 - AluSx SINE Alu -6 306 1 1325 129 129 16 chr6 29199162 29199417 -153215825 + AluSg SINE Alu 1 284 -26 1433 214 35 86 chr6 29199558 29199856 -153215386 + LTR43 LTR ERV1 96 359 -243 1922 100 0 0 chr6 29199856 29200107 -153215135 + AluSg SINE Alu 1 251 -59 1433 214 35 86 chr6 29200107 29200321 -153214921 + LTR43 LTR ERV1 359 582 -20 315 0 0 0 chr6 29200628 29200663 -153214579 + (A)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr6 29200663 29200691 -153214551 + (TA)n Simple_repeat Simple_repeat 2 29 0 941 145 179 43 chr6 29201141 29201376 -153213866 - AluJo SINE Alu -7 305 39 2232 126 0 19 chr6 29201393 29201711 -153213531 - AluSx SINE Alu 0 312 1 554 9 0 222 chr6 29201744 29201852 -153213390 - tRNA-Leu-TTG tRNA tRNA -2 84 1 22 35 0 0 chr6 29202354 29202383 -153212859 + AT_rich Low_complexity Low_complexity 1 29 0 2192 93 0 10 chr6 29202680 29202970 -153212272 - AluSx SINE Alu -25 287 1 204 40 0 0 chr6 29202970 29202995 -153212247 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2099 111 4 0 chr6 29202995 29203275 -153211967 - AluSx SINE Alu -29 283 3 2425 76 3 0 chr6 29203342 29203643 -153211599 + AluY SINE Alu 1 302 -9 289 275 53 23 chr6 29203760 29203891 -153211351 - L1MC/D LINE L1 -2056 5752 5618 206 250 0 0 chr6 29204452 29204504 -153210738 + T-rich Low_complexity Low_complexity 1 52 0 551 9 0 229 chr6 29204813 29204922 -153210320 - tRNA-Leu-TTG tRNA tRNA -2 84 1 2379 65 0 7 chr6 29205624 29205918 -153209324 - AluSx SINE Alu -20 292 1 255 125 0 0 chr6 29205999 29206039 -153209203 + (A)n Simple_repeat Simple_repeat 1 40 0 2008 88 46 0 chr6 29206171 29206433 -153208809 - AluSg SINE Alu -36 274 1 2378 82 0 10 chr6 29206728 29207033 -153208209 + AluSq SINE Alu 1 302 -11 1479 261 91 63 chr6 29207302 29207689 -153207553 + MLT1G1 LTR MaLR 1 411 -184 1802 173 3 7 chr6 29207689 29207978 -153207264 - AluJb SINE Alu -24 288 1 1479 261 91 63 chr6 29207978 29208160 -153207082 + MLT1G1 LTR MaLR 411 586 -9 299 139 14 0 chr6 29208164 29208220 -153207022 - LTR41 LTR ERVL 0 795 723 953 241 105 30 chr6 29208230 29208758 -153206484 - LTR41 LTR ERVL -157 616 15 2307 98 3 25 chr6 29209051 29209367 -153205875 + AluSq SINE Alu 1 309 -4 872 44 0 9 chr6 29209443 29209557 -153205685 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 2410 89 0 10 chr6 29209557 29209870 -153205372 + AluY SINE Alu 1 310 -1 599 257 0 0 chr6 29209879 29210019 -153205223 + MLT1-int LTR MaLR 397 536 -835 999 168 0 0 chr6 29210808 29210997 -153204245 - AluSg/x SINE Alu 0 320 132 1835 116 94 4 chr6 29210998 29211273 -153203969 - AluSq SINE Alu -8 305 6 246 263 18 0 chr6 29211679 29211736 -153203506 + MER5C DNA MER1_type 5 62 -262 2258 106 0 0 chr6 29211971 29212264 -153202978 - AluSc SINE Alu -16 293 1 24 53 0 0 chr6 29212302 29212340 -153202902 + AT_rich Low_complexity Low_complexity 1 38 0 2278 109 3 0 chr6 29212719 29213021 -153202221 + AluSx SINE Alu 1 303 -9 688 285 221 44 chr6 29213103 29213483 -153201759 + LTR33 LTR ERVL 6 470 -51 2622 49 0 3 chr6 29213577 29213883 -153201359 + AluY SINE Alu 1 305 -6 2110 112 11 11 chr6 29214056 29214215 -153201027 - AluSq SINE Alu -18 295 134 2480 56 16 10 chr6 29214215 29214521 -153200721 - AluSc SINE Alu -1 308 1 2110 112 11 11 chr6 29214521 29214648 -153200594 - AluSq SINE Alu -178 135 9 376 234 95 36 chr6 29214950 29215087 -153200155 - L1ME4a LINE L1 -194 5927 5783 201 181 14 28 chr6 29215226 29215298 -153199944 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chr6 29216791 29216823 -153198419 + AT_rich Low_complexity Low_complexity 1 32 0 404 176 0 14 chr6 29217532 29217606 -153197636 + tRNA-Thr-ACA tRNA tRNA 1 73 -3 2010 120 0 13 chr6 29217656 29217957 -153197285 - AluSx SINE Alu -15 297 1 509 126 92 0 chr6 29218088 29218175 -153197067 + L1M3f LINE L1 7 101 -5227 253 308 13 0 chr6 29218319 29218397 -153196845 + MLT1K LTR MaLR 507 585 -3 270 309 64 0 chr6 29218458 29218568 -153196674 + L2 LINE L2 3151 3267 -5 588 213 177 6 chr6 29218577 29218741 -153196501 + AluJo SINE Alu 120 311 -1 2044 115 0 0 chr6 29219475 29219754 -153195488 - AluSq SINE Alu -12 301 23 790 189 40 0 chr6 29219777 29219925 -153195317 + LTR8A LTR ERV1 1 154 -573 838 239 6 17 chr6 29219927 29220107 -153195135 + LTR8 LTR ERV1 514 691 0 1742 174 3 0 chr6 29220198 29220509 -153194733 - AluSx SINE Alu 0 312 1 872 246 57 93 chr6 29220886 29221444 -153193798 - MER34 LTR ERV1 -4 538 1 1852 159 7 3 chr6 29221450 29221745 -153193497 - AluJo SINE Alu -10 302 7 240 369 87 0 chr6 29221768 29221865 -153193377 + LTR67 LTR ERVL 107 213 -339 1946 116 58 10 chr6 29221865 29222159 -153193083 + AluSx SINE Alu 1 308 -4 215 122 0 24 chr6 29222169 29222210 -153193032 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 487 284 93 6 chr6 29222312 29222474 -153192768 + LTR67 LTR ERVL 348 523 -34 3203 144 89 76 chr6 29222571 29223127 -153192115 - MER50 LTR ERV1 -29 705 136 2347 60 0 14 chr6 29223127 29223446 -153191796 - AluY SINE Alu 0 315 1 3203 144 89 76 chr6 29223446 29223584 -153191658 - MER50 LTR ERV1 -598 136 1 2436 198 42 12 chr6 29223708 29224166 -153191076 + MLT2B2 LTR ERVL 1 477 -38 237 65 0 0 chr6 29224166 29224197 -153191045 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2436 198 42 12 chr6 29224197 29224237 -153191005 + MLT2B2 LTR ERVL 477 514 -1 4681 79 4 69 chr6 29224628 29225336 -153189906 - MER4A LTR ERV1 0 664 3 2214 128 0 3 chr6 29225353 29225666 -153189576 - AluSq SINE Alu -1 312 1 1420 158 87 34 chr6 29225667 29225965 -153189277 - LTR48 LTR ERV1 -473 314 1 2502 74 0 0 chr6 29226042 29226340 -153188902 + AluSg SINE Alu 1 298 -12 2121 124 30 0 chr6 29226460 29226759 -153188483 + AluSx SINE Alu 1 308 -4 31 0 0 0 chr6 29226980 29227011 -153188231 + AT_rich Low_complexity Low_complexity 1 31 0 1541 159 24 54 chr6 29227238 29227534 -153187708 - AluJb SINE Alu -24 288 2 2388 76 3 0 chr6 29227583 29227872 -153187370 - AluSp SINE Alu -13 300 11 478 285 32 72 chr6 29227939 29228160 -153187082 - LTR33 LTR ERVL -2 519 308 356 296 57 68 chr6 29228194 29228287 -153186955 - LTR33 LTR ERVL -301 220 128 2226 112 10 0 chr6 29228287 29228583 -153186659 + AluSg SINE Alu 1 299 -11 356 296 57 68 chr6 29228583 29228665 -153186577 - LTR33 LTR ERVL -393 128 47 1567 210 25 27 chr6 29228959 29229325 -153185917 - MLT1A1 LTR MaLR 0 365 1 1194 164 36 84 chr6 29231481 29231755 -153183487 - MLT2B2 LTR ERVL 0 515 255 3952 148 19 0 chr6 29231757 29232339 -153182903 - ERVL-A2 LTR ERVL -3384 2380 1788 3430 70 14 0 chr6 29232339 29232767 -153182475 + LTR3b LTR ERVK 1 434 -3 612 96 85 0 chr6 29232778 29232872 -153182370 - ERVL-A2 LTR ERVL -3970 1794 1693 916 201 1 0 chr6 29233034 29233210 -153182032 - ERVL-A2 LTR ERVL -3979 1693 1498 * 17969 64 14 19 chr6 29233208 29235490 -153179752 - ERVL-A2 LTR ERVL -3382 2272 1 299 29 0 0 chr6 29235490 29235524 -153179718 - MLT2A2 LTR ERVL 0 453 420 1990 116 55 27 chr6 29235869 29236197 -153179045 + MER1B DNA MER1_type 1 337 0 21 0 0 31 chr6 29236241 29236255 -153178987 + AT_rich Low_complexity Low_complexity 1 14 -17 2505 84 0 3 chr6 29236255 29236566 -153178676 - AluY SINE Alu -1 310 1 21 0 0 31 chr6 29236566 29236583 -153178659 + AT_rich Low_complexity Low_complexity 14 31 0 1667 150 64 4 chr6 29236856 29237123 -153178119 + AluJo SINE Alu 11 293 -19 1501 171 18 145 chr6 29237229 29237444 -153177798 - LTR26E LTR ERV1 0 622 381 2170 126 0 22 chr6 29237444 29237762 -153177480 + AluSx SINE Alu 1 311 -1 1501 171 18 145 chr6 29237762 29237805 -153177437 - LTR26E LTR ERV1 -241 381 334 2152 117 0 35 chr6 29237805 29238122 -153177120 - AluSx SINE Alu -6 306 1 1501 171 18 145 chr6 29238122 29238155 -153177087 - LTR26E LTR ERV1 -288 334 389 747 180 0 0 chr6 29238155 29238277 -153176965 - FLAM_C SINE Alu -11 122 1 1501 171 18 145 chr6 29238277 29238376 -153176866 - LTR26E LTR ERV1 -232 390 280 2159 107 0 38 chr6 29238392 29238711 -153176531 + AluSc SINE Alu 3 309 0 2432 59 14 0 chr6 29239161 29239449 -153175793 - AluY SINE Alu -19 292 1 203 245 0 71 chr6 29239504 29239602 -153175640 + T-rich Low_complexity Low_complexity 5 95 0 661 233 0 0 chr6 29239970 29240099 -153175143 - FLAM_A SINE Alu -3 130 2 4388 186 56 53 chr6 29240249 29241168 -153174074 + L1MB1 LINE L1 4162 5077 -1091 1755 119 93 0 chr6 29241168 29241436 -153173806 - AluSp SINE Alu 0 313 21 4388 186 56 53 chr6 29241436 29241600 -153173642 + L1MB1 LINE L1 5077 5239 -929 2277 94 3 0 chr6 29241600 29241888 -153173354 + AluSp SINE Alu 1 289 -24 4388 186 56 53 chr6 29241888 29242196 -153173046 + L1MB1 LINE L1 5239 5545 -623 2143 136 3 0 chr6 29242196 29242505 -153172737 + AluSx SINE Alu 1 310 -2 4388 186 56 53 chr6 29242505 29242733 -153172509 + L1MB1 LINE L1 5545 5771 -397 1336 178 159 0 chr6 29242733 29242991 -153172251 + AluJo SINE Alu 1 299 -3 4388 186 56 53 chr6 29242991 29243261 -153171981 + L1MB1 LINE L1 5771 6113 -55 2324 78 3 7 chr6 29243261 29243556 -153171686 + AluSp SINE Alu 1 294 -19 4388 186 56 53 chr6 29243556 29243609 -153171633 + L1MB1 LINE L1 6113 6164 -4 361 211 16 11 chr6 29244418 29244517 -153170725 - L1M LINE L1 -764 5407 5312 270 253 90 18 chr6 29244500 29244666 -153170576 + L1ME3A LINE L1 5000 5177 -969 * 1009 147 0 0 chr6 29244672 29244815 -153170427 - AluSg/x SINE Alu -25 287 145 1862 151 0 31 chr6 29244986 29245305 -153169937 + AluJb SINE Alu 2 310 -2 345 208 28 14 chr6 29245623 29245695 -153169547 - tRNA-Val-GTG tRNA tRNA -3 73 1 2220 92 0 72 chr6 29245958 29246293 -153168949 - AluSx SINE Alu -1 311 1 3102 138 53 96 chr6 29246366 29246896 -153168346 + LTR8 LTR ERV1 1 493 -198 2151 114 0 16 chr6 29246896 29247204 -153168038 - AluSq SINE Alu -9 304 2 3102 138 53 96 chr6 29247204 29247395 -153167847 + LTR8 LTR ERV1 493 691 0 1149 159 52 30 chr6 29247648 29247756 -153167486 - Tigger7 DNA MER2_type 0 2491 2387 4769 95 4 38 chr6 29247756 29248027 -153167215 + MER4A LTR ERV1 1 280 -384 2426 97 0 10 chr6 29248027 29248337 -153166905 + AluSx SINE Alu 1 307 -5 4769 95 4 38 chr6 29248337 29248752 -153166490 + MER4A LTR ERV1 280 664 0 1149 159 52 30 chr6 29248752 29248875 -153166367 - Tigger7 DNA MER2_type -104 2387 2255 2079 118 10 14 chr6 29249080 29249377 -153165865 - AluSx SINE Alu -16 296 1 28 29 0 0 chr6 29249502 29249537 -153165705 + AT_rich Low_complexity Low_complexity 1 35 0 603 68 0 0 chr6 29250104 29250177 -153165065 - tRNA-Val-GTT tRNA tRNA -3 73 1 693 279 112 18 chr6 29250345 29250685 -153164557 + L1ME3A LINE L1 5643 6014 -156 243 0 0 0 chr6 29250735 29250762 -153164480 + (TG)n Simple_repeat Simple_repeat 1 27 0 354 173 0 0 chr6 29250785 29250860 -153164382 + GA-rich Low_complexity Low_complexity 1 75 0 252 222 0 63 chr6 29250889 29250952 -153164290 - MLT2D LTR ERVL -65 349 291 2745 209 33 18 chr6 29251050 29251772 -153163470 + L1MB3 LINE L1 3220 3952 -2194 9975 53 7 106 chr6 29252052 29253585 -153161657 + SVA Other Other 5 1386 0 2903 175 21 62 chr6 29253602 29254073 -153161169 + L1MB3 LINE L1 4692 5181 -999 2190 109 0 3 chr6 29254073 29254398 -153160844 + AluSx SINE Alu 1 312 0 2903 175 21 62 chr6 29254398 29254957 -153160285 + L1MB3 LINE L1 5181 5666 -514 2492 57 0 31 chr6 29254957 29255275 -153159967 + AluY SINE Alu 1 308 -3 2903 175 21 62 chr6 29255275 29255341 -153159901 + L1MB3 LINE L1 5666 5733 -447 598 221 7 14 chr6 29255342 29255482 -153159760 + AluJo SINE Alu 2 140 -172 228 154 26 0 chr6 29255482 29255521 -153159721 + Alu SINE Alu 241 280 -22 1873 186 77 12 chr6 29255537 29255968 -153159274 + L1MB3 LINE L1 5725 6183 0 1853 144 0 72 chr6 29256100 29256434 -153158808 - AluSx SINE Alu -2 310 1 282 334 46 30 chr6 29256562 29256867 -153158375 + L1MA7 LINE L1 5617 5926 -365 * 1838 203 155 58 chr6 29256609 29256908 -153158334 + L1MD2 LINE L1 5660 5928 -431 1983 120 27 20 chr6 29256908 29257209 -153158033 + AluSx SINE Alu 1 303 -9 1838 203 155 58 chr6 29257209 29257438 -153157804 + L1MD2 LINE L1 5928 6133 -226 2186 111 3 0 chr6 29257438 29257736 -153157506 + AluSx SINE Alu 12 310 -2 1838 203 155 58 chr6 29257736 29257832 -153157410 + L1MD2 LINE L1 6133 6346 -13 2666 48 0 3 chr6 29257879 29258189 -153157053 + AluY SINE Alu 1 309 -2 4780 153 65 14 chr6 29258263 29258577 -153156665 + L1MC1 LINE L1 138 435 -5991 2372 93 0 6 chr6 29258577 29258890 -153156352 - AluSx SINE Alu -1 311 1 4780 153 65 14 chr6 29258890 29259470 -153155772 + L1MC1 LINE L1 435 1077 -5349 3634 156 8 3 chr6 29259438 29260131 -153155111 + L1MC1 LINE L1 5453 6146 -467 * 2284 84 17 0 chr6 29260131 29260450 -153154792 - AluSq SINE Alu 0 313 1 2036 113 51 0 chr6 29260464 29260756 -153154486 - AluSg SINE Alu -3 307 1 631 186 22 82 chr6 29260757 29260940 -153154302 + L1MC2 LINE L1 6160 6331 -13 1533 164 63 35 chr6 29260955 29261280 -153153962 + AluJo SINE Alu 1 333 0 234 91 0 0 chr6 29261320 29261353 -153153889 + (A)n Simple_repeat Simple_repeat 1 33 0 2196 114 3 0 chr6 29261356 29261655 -153153587 + AluSx SINE Alu 1 300 -12 474 213 52 29 chr6 29262205 29262341 -153152901 - MER92C LTR ERV1 -2 552 414 241 146 18 18 chr6 29262343 29262398 -153152844 + L1MC1 LINE L1 6241 6295 -318 529 167 0 12 chr6 29262462 29262546 -153152696 + MER68 LTR ERV1 480 562 0 494 161 34 85 chr6 29262546 29262664 -153152578 - MER92C LTR ERV1 -243 311 200 2432 45 3 32 chr6 29262664 29262975 -153152267 + AluY SINE Alu 3 304 -7 2294 74 9 49 chr6 29263334 29263660 -153151582 + AluSp SINE Alu 1 313 0 360 43 0 0 chr6 29263875 29263921 -153151321 + (A)n Simple_repeat Simple_repeat 1 46 0 515 105 0 40 chr6 29263942 29264018 -153151224 + tRNA-Phe-TTC tRNA tRNA 1 73 -3 737 118 0 0 chr6 29264321 29264431 -153150811 - AluSg/x SINE Alu -9 301 192 1057 84 0 0 chr6 29264431 29264562 -153150680 - AluSc SINE Alu -178 131 1 2126 95 0 26 chr6 29264614 29264918 -153150324 - AluSq SINE Alu -17 296 1 261 0 0 0 chr6 29265170 29265199 -153150043 + (CA)n Simple_repeat Simple_repeat 2 30 0 436 226 7 95 chr6 29265238 29265375 -153149867 + FLAM_A SINE Alu 1 125 -17 2282 74 13 7 chr6 29265482 29265781 -153149461 + AluSx SINE Alu 10 310 -2 310 172 0 17 chr6 29267395 29267453 -153147789 + MER66A LTR ERV1 284 340 -138 633 27 0 0 chr6 29267759 29267834 -153147408 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 1977 115 30 20 chr6 29268018 29268323 -153146919 + AluSp SINE Alu 1 308 -5 273 57 0 0 chr6 29269123 29269158 -153146084 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 652 27 0 0 chr6 29269740 29269814 -153145428 - tRNA-Arg-CGC tRNA tRNA -2 74 1 2400 88 3 0 chr6 29270175 29270483 -153144759 - AluSp SINE Alu -4 309 1 2170 95 7 7 chr6 29271180 29271474 -153143768 - AluSx SINE Alu -18 294 1 494 143 0 0 chr6 29271624 29271701 -153143541 - tRNA-Ser-TCA tRNA tRNA -1 84 8 994 236 185 38 chr6 29271972 29272266 -153142976 + L2 LINE L2 968 1218 -2096 2053 92 7 33 chr6 29272266 29272570 -153142672 + AluSx SINE Alu 1 296 -16 994 236 185 38 chr6 29272570 29272719 -153142523 + L2 LINE L2 1218 1476 -1838 405 243 140 0 chr6 29272745 29272881 -153142361 + L2 LINE L2 1884 2038 -1276 3553 177 30 8 chr6 29272882 29273667 -153141575 - L1MC1 LINE L1 -445 5888 5081 825 220 38 0 chr6 29273667 29273826 -153141416 + AluJb SINE Alu 134 298 -14 2340 80 0 10 chr6 29274311 29274611 -153140631 - AluSg SINE Alu -13 297 1 938 208 35 75 chr6 29274851 29275198 -153140044 - L1MC1 LINE L1 -1052 5094 4762 196 292 28 0 chr6 29275199 29275271 -153139971 + L2 LINE L2 2066 2139 -1175 2165 123 7 0 chr6 29275271 29275572 -153139670 - AluSx SINE Alu -9 303 1 445 276 104 31 chr6 29275572 29275735 -153139507 + L2 LINE L2 3130 3304 -9 248 325 81 16 chr6 29275762 29275885 -153139357 - MIR3 SINE MIR -63 145 15 2140 115 23 13 chr6 29276041 29276346 -153138896 - AluSx SINE Alu -3 309 2 2225 110 0 3 chr6 29276706 29276997 -153138245 - AluSg SINE Alu -20 290 1 234 262 95 0 chr6 29277008 29277092 -153138150 + LTR66 LTR ERVL 26 117 -493 227 335 71 12 chr6 29277336 29277506 -153137736 + MIR SINE MIR 6 185 -77 277 271 47 12 chr6 29277534 29277619 -153137623 - L2 LINE L2 -51 3221 3134 2118 117 0 0 chr6 29278023 29278314 -153136928 - AluSq SINE Alu -22 291 1 859 76 144 0 chr6 29278314 29278432 -153136810 - AluSq/x SINE Alu -178 135 1 1736 122 41 44 chr6 29278499 29278794 -153136448 + AluSq SINE Alu 1 294 -19 365 87 0 0 chr6 29279803 29279849 -153135393 + tRNA-Val-GTT tRNA tRNA 1 46 -30 639 27 0 0 chr6 29280282 29280355 -153134887 - tRNA-Val-GTT tRNA tRNA -3 73 1 2324 85 0 16 chr6 29280614 29280932 -153134310 + AluSp SINE Alu 1 313 0 180 333 0 0 chr6 29280946 29281006 -153134236 - L2 LINE L2 -219 3053 2994 192 40 0 0 chr6 29281025 29281050 -153134192 + (T)n Simple_repeat Simple_repeat 1 25 0 610 103 0 0 chr6 29281495 29281582 -153133660 + AluSq/x SINE Alu 37 123 -189 393 187 0 13 chr6 29281886 29281961 -153133281 + tRNA-Val-GTG tRNA tRNA 2 75 -1 2217 106 7 0 chr6 29282067 29282370 -153132872 + AluSx SINE Alu 2 306 -6 393 22 0 0 chr6 29282470 29282516 -153132726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2144 65 65 4 chr6 29282925 29283201 -153132041 + AluSp SINE Alu 1 293 -20 2044 119 7 0 chr6 29283272 29283574 -153131668 - AluSx SINE Alu -8 304 1 679 0 0 0 chr6 29283871 29283945 -153131297 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2379 79 3 19 chr6 29284150 29284468 -153130774 + AluSq SINE Alu 1 313 0 310 28 0 0 chr6 29284740 29284776 -153130466 + U2 snRNA snRNA 1 36 -152 987 282 41 40 chr6 29284810 29285211 -153130031 + LTR16A LTR ERVL 51 457 0 2130 97 19 13 chr6 29285414 29285724 -153129518 + AluSx SINE Alu 1 312 0 2598 58 0 0 chr6 29285727 29286036 -153129206 + AluY SINE Alu 1 309 -2 648 14 0 0 chr6 29287364 29287438 -153127804 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 25 65 0 0 chr6 29287978 29288024 -153127218 + AT_rich Low_complexity Low_complexity 1 46 0 256 256 88 44 chr6 29288064 29288103 -153127139 - L1MC4a LINE L1 -1692 6116 6080 2399 99 0 0 chr6 29288103 29288415 -153126827 - AluSx SINE Alu 0 312 1 256 256 88 44 chr6 29288415 29288625 -153126617 - L1MC4a LINE L1 -1728 6080 5856 1951 90 4 4 chr6 29288675 29288931 -153126311 + AluSc SINE Alu 38 293 -16 279 133 0 0 chr6 29289298 29289343 -153125899 + (TG)n Simple_repeat Simple_repeat 2 46 0 404 159 29 0 chr6 29289370 29289439 -153125803 - AluSg/x SINE Alu -13 287 217 1992 119 173 31 chr6 29289451 29289621 -153125621 + LTR47A LTR ERVL 11 155 -297 1914 142 27 0 chr6 29289621 29289916 -153125326 + AluSx SINE Alu 1 303 -9 1992 119 173 31 chr6 29289916 29290132 -153125110 + LTR47A LTR ERVL 155 452 0 699 282 136 22 chr6 29290209 29290578 -153124664 + HAL1 LINE L1 1496 1906 -601 21 0 0 0 chr6 29291033 29291054 -153124188 + AT_rich Low_complexity Low_complexity 1 21 0 2164 129 0 0 chr6 29291397 29291706 -153123536 - AluSx SINE Alu 0 312 4 2305 68 7 36 chr6 29291954 29292261 -153122981 + AluSg SINE Alu 3 300 -10 2416 87 0 3 chr6 29292346 29292655 -153122587 - AluSp SINE Alu -5 308 1 2368 84 3 3 chr6 29292664 29292972 -153122270 - AluSg SINE Alu -2 308 1 228 193 34 68 chr6 29292972 29293060 -153122182 + L1MC5 LINE L1 7829 7913 -48 200 314 0 0 chr6 29293967 29294018 -153121224 + MER5B DNA MER1_type 128 178 0 1745 134 42 0 chr6 29294391 29294652 -153120590 - AluSx SINE Alu -24 288 17 409 304 48 39 chr6 29294722 29294952 -153120290 - MIR SINE MIR -10 252 21 2374 98 0 7 chr6 29294956 29295263 -153119979 - AluSx SINE Alu -7 305 1 2339 90 0 7 chr6 29296027 29296328 -153118914 + AluSg SINE Alu 9 307 -3 2364 47 3 72 chr6 29296349 29296669 -153118573 + AluY SINE Alu 2 299 -12 2186 117 0 0 chr6 29296813 29297111 -153118131 - AluSx SINE Alu -14 298 1 403 217 94 71 chr6 29297152 29297364 -153117878 - L1MC4a LINE L1 -1925 5883 5667 217 217 0 28 chr6 29297366 29297472 -153117770 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1502 181 20 40 chr6 29297618 29297760 -153117482 + AluJb SINE Alu 1 144 -168 2404 77 0 3 chr6 29297760 29298059 -153117183 + AluSg SINE Alu 1 298 -12 1502 181 20 40 chr6 29298059 29298215 -153117027 + AluJb SINE Alu 144 293 -19 1059 187 14 10 chr6 29298298 29298507 -153116735 + AluJo SINE Alu 85 294 -18 1676 108 0 0 chr6 29299107 29299321 -153115921 - AluSg/x SINE Alu -16 294 81 1367 166 58 75 chr6 29299404 29299712 -153115530 + AluJo SINE Alu 1 303 -9 4787 150 30 37 chr6 29299819 29299859 -153115383 - L1MB3 LINE L1 -7 6176 6137 186 71 0 0 chr6 29299859 29299887 -153115355 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1952 87 60 11 chr6 29299887 29300152 -153115090 - AluSc SINE Alu -31 278 1 4787 150 30 37 chr6 29300152 29300634 -153114608 - L1MB3 LINE L1 -45 6138 5660 2682 46 3 0 chr6 29300634 29300939 -153114303 - AluY SINE Alu -5 306 1 4787 150 30 37 chr6 29300939 29301323 -153113919 - L1MB3 LINE L1 -523 5660 5275 472 147 147 116 chr6 29301655 29301739 -153113503 + MER3 DNA MER1_type 1 92 -70 2009 139 3 10 chr6 29301739 29302040 -153113202 + AluJb SINE Alu 1 299 -13 472 147 147 116 chr6 29302040 29302084 -153113158 + MER3 DNA MER1_type 92 133 -76 227 380 62 8 chr6 29302126 29302255 -153112987 - L2 LINE L2 -573 2741 2606 359 223 172 87 chr6 29302317 29302649 -153112593 - MLT1J LTR MaLR -4 507 148 1726 157 143 51 chr6 29302831 29303259 -153111983 - MLT1C LTR MaLR 0 467 1 1974 139 0 37 chr6 29303774 29304097 -153111145 - AluJb SINE Alu -1 311 1 1674 181 0 0 chr6 29304733 29305009 -153110233 + AluJo SINE Alu 37 312 0 2598 47 0 0 chr6 29305056 29305355 -153109887 + AluY SINE Alu 1 299 -12 393 259 136 32 chr6 29305943 29306194 -153109048 + MLT1J LTR MaLR 232 508 -3 508 220 63 73 chr6 29306195 29306299 -153108943 - MIR SINE MIR -1 261 158 1100 169 16 6 chr6 29306299 29306482 -153108760 + MER5A DNA MER1_type 5 189 0 508 220 63 73 chr6 29306482 29306568 -153108674 - MIR SINE MIR -104 158 73 1270 160 82 25 chr6 29306611 29306883 -153108359 - Charlie2 DNA MER1_type 0 2862 2568 2252 136 0 0 chr6 29306883 29307192 -153108050 - AluSx SINE Alu -3 309 1 1270 160 82 25 chr6 29307192 29307237 -153108005 - Charlie2 DNA MER1_type -294 2568 2527 2235 89 7 10 chr6 29307256 29307547 -153107695 - AluSc SINE Alu -19 290 1 240 185 0 0 chr6 29307592 29307646 -153107596 + CT-rich Low_complexity Low_complexity 4 57 0 1800 166 7 23 chr6 29307659 29307967 -153107275 - AluSx SINE Alu -6 306 4 826 227 92 12 chr6 29307968 29308219 -153107023 - Charlie2 DNA MER1_type -628 2234 1964 231 328 49 0 chr6 29308279 29308401 -153106841 + MER112 DNA MER1_type 6 133 -127 3422 98 40 23 chr6 29308449 29308747 -153106495 - Tigger3(Golem) DNA MER2_type -1 3027 2715 2126 122 7 3 chr6 29308747 29309042 -153106200 + AluSq SINE Alu 1 296 -17 3422 98 40 23 chr6 29309042 29309261 -153105981 - Tigger3(Golem) DNA MER2_type -313 2715 2501 1091 117 0 0 chr6 29309261 29309442 -153105800 - AluSg/x SINE Alu 0 318 138 188 283 0 0 chr6 29309659 29309705 -153105537 + L2 LINE L2 3266 3311 -2 2685 52 0 0 chr6 29310885 29311193 -153104049 + AluY SINE Alu 1 308 -3 225 0 0 0 chr6 29311325 29311350 -153103892 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1862 135 7 11 chr6 29311350 29311631 -153103611 - AluSx SINE Alu -32 280 1 942 225 0 6 chr6 29311881 29312054 -153103188 - MER45A DNA AcHobo -3 175 4 1266 118 10 35 chr6 29312680 29312883 -153102359 + AluSg/x SINE Alu 113 310 0 1720 148 46 30 chr6 29312898 29313201 -153102041 + AluSx SINE Alu 1 308 -4 200 219 0 0 chr6 29313317 29313358 -153101884 - MIR SINE MIR -6 256 216 210 267 0 17 chr6 29313455 29313515 -153101727 - MIR SINE MIR -184 78 20 262 287 37 28 chr6 29313971 29314079 -153101163 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1967 128 3 49 chr6 29314100 29314406 -153100836 + AluSx SINE Alu 1 292 -20 1700 191 17 7 chr6 29314971 29315270 -153099972 + AluJb SINE Alu 11 312 0 488 176 19 19 chr6 29315506 29315614 -153099628 + MLT2D LTR ERVL 1 108 -306 1911 159 0 7 chr6 29315638 29315927 -153099315 - AluJb SINE Alu -25 287 1 21 0 0 0 chr6 29315936 29315957 -153099285 + AT_rich Low_complexity Low_complexity 1 21 0 2333 103 3 0 chr6 29315957 29316258 -153098984 - AluSq SINE Alu -11 302 1 1735 171 20 3 chr6 29316263 29316556 -153098686 - AluJb SINE Alu -14 298 1 753 195 23 0 chr6 29316584 29316712 -153098530 + FLAM_C SINE Alu 2 132 -11 858 224 112 42 chr6 29316726 29317012 -153098230 + MLT2B1 LTR ERVL 123 428 -92 2294 85 3 10 chr6 29317072 29317365 -153097877 + AluSp SINE Alu 1 291 -22 669 102 0 0 chr6 29317669 29317757 -153097485 - AluSp/q SINE Alu -12 301 214 500 98 120 0 chr6 29317754 29317875 -153097367 + AluSg/x SINE Alu 182 313 0 * 282 242 16 0 chr6 29318064 29318126 -153097116 - tRNA-Ile-ATT tRNA tRNA -14 63 1 2082 124 75 29 chr6 29318190 29318538 -153096704 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr6 29319067 29319090 -153096152 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 222 37 25 chr6 29319091 29319172 -153096070 - MIR SINE MIR -71 191 110 437 271 71 9 chr6 29319644 29319869 -153095373 + L1MC/D LINE L1 5266 5504 -2304 365 128 26 39 chr6 29320298 29320376 -153094866 - tRNA-Ser-AGC tRNA tRNA -6 79 3 233 262 40 56 chr6 29321054 29321180 -153094062 + MER5A DNA MER1_type 40 163 -26 2178 113 7 0 chr6 29321966 29322268 -153092974 + AluSx SINE Alu 1 304 -8 605 159 9 35 chr6 29322394 29322498 -153092744 + FLAM_A SINE Alu 22 124 -187 2451 62 3 3 chr6 29322498 29322802 -153092440 - AluSp SINE Alu -9 304 1 300 327 67 53 chr6 29323039 29323546 -153091696 + L1ME2 LINE L1 5387 5900 -264 443 244 24 16 chr6 29323617 29323740 -153091502 + L1MEc LINE L1 107 230 -6166 1738 138 34 28 chr6 29324008 29324299 -153090943 - AluSx SINE Alu -19 293 1 1087 202 39 0 chr6 29324300 29324508 -153090734 - MER58A DNA MER1_type -8 216 1 200 119 0 24 chr6 29324876 29324918 -153090324 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2512 54 0 3 chr6 29325038 29325334 -153089908 - AluY SINE Alu -16 295 1 25 0 0 0 chr6 29325825 29325850 -153089392 + AT_rich Low_complexity Low_complexity 1 25 0 667 27 0 0 chr6 29325870 29325945 -153089297 + tRNA-Thr-ACT tRNA tRNA 1 75 -2 582 207 167 7 chr6 29326718 29326868 -153088374 - MER45A DNA AcHobo -4 174 1 2140 83 54 0 chr6 29327020 29327296 -153087946 + AluSg SINE Alu 6 296 -14 598 82 0 0 chr6 29327724 29327797 -153087445 - tRNA-Val-GTG tRNA tRNA -3 73 1 5967 155 31 9 chr6 29328392 29329529 -153085713 - L1MC1 LINE L1 -1 6612 5453 5575 156 34 22 chr6 29329497 29329636 -153085606 - L1MC1 LINE L1 -5349 1077 941 * 1897 139 37 10 chr6 29329636 29329930 -153085312 - AluSx SINE Alu -10 302 1 5575 156 34 22 chr6 29329930 29330825 -153084417 - L1MC1 LINE L1 -5485 941 31 773 221 33 16 chr6 29330825 29331069 -153084173 - L1M4 LINE L1 -3118 3028 2781 1127 151 0 38 chr6 29331074 29331259 -153083983 - AluSg/x SINE Alu -17 293 116 1352 225 99 47 chr6 29331259 29331567 -153083675 - L1MD2 LINE L1 -21 6221 5930 2179 112 7 0 chr6 29331567 29331861 -153083381 - AluSx SINE Alu -16 296 1 1352 225 99 47 chr6 29331861 29331915 -153083327 - L1MD2 LINE L1 -312 5930 5880 2029 145 0 0 chr6 29331915 29332212 -153083030 + AluSx SINE Alu 1 297 -15 1352 225 99 47 chr6 29332212 29332440 -153082802 - L1MD2 LINE L1 -362 5880 5656 1858 153 19 22 chr6 29332670 29332703 -153082539 - AluSx SINE Alu 0 312 280 199 0 65 0 chr6 29332703 29332734 -153082508 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1858 153 19 22 chr6 29332734 29333013 -153082229 - AluSx SINE Alu -32 280 1 2319 105 0 0 chr6 29333046 29333341 -153081901 - AluSg SINE Alu -15 295 1 2645 49 0 0 chr6 29333415 29333720 -153081522 + AluY SINE Alu 1 305 -6 1566 165 91 15 chr6 29333721 29334061 -153081181 - L1MB4 LINE L1 -8 6172 5807 576 167 74 0 chr6 29334155 29334263 -153080979 - AluJ SINE Alu -7 305 190 915 162 0 0 chr6 29334266 29334408 -153080834 - AluJ SINE Alu -165 147 6 1600 199 10 103 chr6 29334413 29334545 -153080697 - L1 LINE L1 -1972 4174 4031 2152 91 14 14 chr6 29334545 29334841 -153080401 - AluSx SINE Alu -16 296 1 1600 199 10 103 chr6 29334841 29335147 -153080095 - L1 LINE L1 -2115 4031 3785 2011 143 7 3 chr6 29335147 29335448 -153079794 + AluSx SINE Alu 3 304 -8 1600 199 10 103 chr6 29335448 29335505 -153079737 - L1 LINE L1 -2361 3785 3724 576 241 44 16 chr6 29335497 29335746 -153079496 - L1 LINE L1 -2647 3499 3244 * 459 205 0 73 chr6 29337739 29337789 -153077453 - L1 LINE L1 -2837 3309 3257 2080 114 20 3 chr6 29337789 29338088 -153077154 - AluSx SINE Alu -8 304 1 459 205 0 73 chr6 29338088 29338188 -153077054 - L1 LINE L1 -2889 3257 3170 323 206 11 65 chr6 29338219 29338311 -153076931 + MLT2D LTR ERVL 287 373 -41 1050 165 141 20 chr6 29338449 29338698 -153076544 - AluJo SINE Alu -31 281 3 2422 71 7 3 chr6 29338731 29339041 -153076201 - AluSq SINE Alu -2 311 1 1059 99 12 43 chr6 29339077 29339309 -153075933 + AluSp SINE Alu 127 353 0 24 0 0 0 chr6 29339641 29339665 -153075577 + AT_rich Low_complexity Low_complexity 1 24 0 708 207 0 0 chr6 29339673 29339794 -153075448 - FLAM_A SINE Alu -12 121 1 25 0 0 0 chr6 29339902 29339927 -153075315 + AT_rich Low_complexity Low_complexity 1 25 0 2599 46 0 3 chr6 29340097 29340401 -153074841 + AluY SINE Alu 1 303 -8 1737 113 25 0 chr6 29340412 29340651 -153074591 + AluSq SINE Alu 1 245 -68 229 329 105 9 chr6 29340677 29340896 -153074346 - L1MB4 LINE L1 -2009 5799 5560 2214 105 3 9 chr6 29341043 29341358 -153073884 + AluSq SINE Alu 1 313 0 358 253 0 0 chr6 29342932 29343007 -153072235 + tRNA-Val-GTG tRNA tRNA 1 75 -1 226 23 47 47 chr6 29343247 29343290 -153071952 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 1543 152 53 4 chr6 29343312 29343576 -153071666 - AluJb SINE Alu -35 277 1 301 220 127 17 chr6 29343732 29343850 -153071392 - L1MB4 LINE L1 -956 5190 5060 211 185 37 0 chr6 29343877 29343931 -153071311 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1734 105 4 0 chr6 29343933 29344171 -153071071 - AluSp SINE Alu -74 239 1 324 250 11 11 chr6 29344196 29344284 -153070958 + L1MB1 LINE L1 5319 5406 -756 324 194 0 0 chr6 29345087 29345154 -153070088 - L1MB1 LINE L1 -1 6167 6101 852 236 0 43 chr6 29345155 29345363 -153069879 + MER8 DNA MER2_type 4 202 -37 329 87 65 0 chr6 29345371 29345417 -153069825 + AluJo SINE Alu 87 135 -167 253 189 19 0 chr6 29345422 29345475 -153069767 + L1MB1 LINE L1 5725 5778 -390 2091 123 3 23 chr6 29345491 29345800 -153069442 + AluSq SINE Alu 11 313 0 283 145 145 0 chr6 29345800 29345862 -153069380 + L1MB1 LINE L1 5852 5922 -261 1267 134 71 36 chr6 29345915 29346040 -153069202 + L1MB1 LINE L1 5906 6025 -143 2312 132 28 3 chr6 29346040 29346395 -153068847 - THE1B LTR MaLR 0 364 1 1267 134 71 36 chr6 29346395 29346456 -153068786 + L1MB1 LINE L1 6025 6082 -86 1129 214 0 36 chr6 29346456 29346704 -153068538 - MER8 DNA MER2_type 0 239 1 1267 134 71 36 chr6 29346704 29346769 -153068473 + L1MB1 LINE L1 6082 6167 -1 410 200 125 0 chr6 29346876 29346965 -153068277 - AluSg SINE Alu -219 81 1 1991 135 14 7 chr6 29346965 29347334 -153067908 - AluSx SINE Alu 0 371 1 1632 171 129 34 chr6 29347334 29347563 -153067679 - L1M3 LINE L1 -434 5734 5528 185 62 0 31 chr6 29347563 29347595 -153067647 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1632 171 129 34 chr6 29347595 29347991 -153067251 - L1M3 LINE L1 -640 5528 5048 1778 143 0 4 chr6 29347991 29348263 -153066979 - AluJb SINE Alu -41 271 1 243 170 0 0 chr6 29348278 29348325 -153066917 + (CAA)n Simple_repeat Simple_repeat 2 48 0 273 225 0 25 chr6 29348330 29348410 -153066832 + L1 LINE L1 4745 4822 -1324 1919 201 93 8 chr6 29348415 29348887 -153066355 - L1M3 LINE L1 -1422 4724 4213 1066 158 44 35 chr6 29348884 29349112 -153066130 - L1M3 LINE L1 -2289 3857 3628 * 2331 96 3 0 chr6 29349115 29349417 -153065825 + AluSx SINE Alu 1 303 -9 281 198 70 23 chr6 29349417 29349497 -153065745 - L1M3 LINE L1 -3011 3135 3052 2240 86 4 0 chr6 29349500 29349815 -153065427 + AluSp SINE Alu 3 318 0 1088 154 35 0 chr6 29349815 29349984 -153065258 + AluSg/x SINE Alu 134 308 -4 700 217 31 6 chr6 29349987 29350148 -153065094 - L1M3 LINE L1 -3353 2793 2629 228 405 10 20 chr6 29350684 29350879 -153064363 + L2 LINE L2 2785 2977 -337 458 285 0 8 chr6 29351033 29351163 -153064079 + L2 LINE L2 3182 3310 -3 647 106 0 0 chr6 29351173 29351267 -153063975 + AluS SINE Alu 7 100 -212 313 106 47 129 chr6 29351267 29351352 -153063890 - LTR41 LTR ERVL -140 633 556 651 187 32 39 chr6 29351582 29351737 -153063505 - LTR41 LTR ERVL -615 158 5 2324 58 38 0 chr6 29351854 29352146 -153063096 + AluSq SINE Alu 1 303 -10 667 14 0 0 chr6 29352576 29352649 -153062593 - tRNA-Val-GTT tRNA tRNA -3 73 1 31 96 0 0 chr6 29353024 29353118 -153062124 + AT_rich Low_complexity Low_complexity 1 94 0 234 311 0 0 chr6 29353591 29353652 -153061590 - tRNA-Val-GTG tRNA tRNA -15 61 1 825 181 23 53 chr6 29354672 29354843 -153060399 + FAM SINE Alu 2 167 -8 24 32 0 0 chr6 29354856 29354887 -153060355 + AT_rich Low_complexity Low_complexity 1 31 0 763 114 14 71 chr6 29354887 29355027 -153060215 + FLAM_C SINE Alu 1 132 -1 363 328 30 40 chr6 29355267 29355468 -153059774 + MIR SINE MIR 24 222 -40 244 276 198 17 chr6 29355561 29355677 -153059565 - MIR SINE MIR -123 139 3 232 280 75 0 chr6 29356078 29356171 -153059071 - MER5A DNA MER1_type -57 132 33 1564 168 154 9 chr6 29356477 29356912 -153058330 + MER109 Unknown Unknown 1933 2430 -2 664 215 243 42 chr6 29356916 29356965 -153058277 - L1 LINE L1 -1837 4309 4271 213 65 0 0 chr6 29356965 29356996 -153058246 + (TG)n Simple_repeat Simple_repeat 2 32 0 664 215 243 42 chr6 29356996 29357033 -153058209 - L1 LINE L1 -1875 4271 4243 1582 129 36 79 chr6 29357033 29357336 -153057906 + AluJo SINE Alu 1 290 -22 664 215 243 42 chr6 29357336 29357536 -153057706 - L1 LINE L1 -1903 4243 3964 908 168 13 7 chr6 29357556 29357711 -153057531 - AluJb SINE Alu -13 299 144 506 163 0 0 chr6 29357890 29357970 -153057272 - AluJ/FLAM SINE Alu -231 81 2 486 210 0 50 chr6 29358026 29358145 -153057097 + LTR38B LTR ERV1 2 114 -496 264 259 78 128 chr6 29358256 29358653 -153056589 + LTR38B LTR ERV1 183 559 -51 2487 81 3 0 chr6 29358654 29358963 -153056279 - AluSg SINE Alu 0 310 1 296 215 154 0 chr6 29360704 29360769 -153054473 + tRNA-Val-GTG tRNA tRNA 1 75 -1 189 74 0 0 chr6 29360779 29360806 -153054436 + (TC)n Simple_repeat Simple_repeat 2 28 0 664 256 36 31 chr6 29360869 29361064 -153054178 - MLT1D LTR MaLR -48 457 262 2634 46 7 0 chr6 29361068 29361404 -153053838 - AluY SINE Alu 0 338 1 955 142 119 28 chr6 29362574 29362792 -153052450 - MER31B LTR ERV1 -1 465 228 423 0 0 0 chr6 29362800 29362847 -153052395 + (T)n Simple_repeat Simple_repeat 1 47 0 2366 70 3 0 chr6 29362866 29363152 -153052090 + AluSp SINE Alu 1 287 -26 363 136 0 0 chr6 29363170 29363229 -153052013 + (CA)n Simple_repeat Simple_repeat 2 60 0 632 213 97 63 chr6 29363243 29363450 -153051792 - MER31B LTR ERV1 -252 214 1 2479 169 31 5 chr6 29364103 29364516 -153050726 + MER70B LTR ERVL 155 578 0 1943 188 30 3 chr6 29364518 29364879 -153050363 + MER70B-int LTR ERVL 1 371 -4652 5268 230 57 35 chr6 29366146 29367769 -153047473 + MER70B-int LTR ERVL 787 3092 -2438 2402 187 10 5 chr6 29367862 29368280 -153046962 + MER70B-int LTR ERVL 3580 3999 -1024 2288 229 27 4 chr6 29368287 29368768 -153046474 + MER70B LTR ERVL 32 523 -55 2198 66 7 31 chr6 29368938 29369271 -153045971 + AluY SINE Alu 1 326 0 1032 104 15 0 chr6 29369287 29369422 -153045820 + AluSg SINE Alu 1 137 -173 484 35 0 0 chr6 29369422 29369480 -153045762 + AluY SINE Alu 241 298 -14 2398 172 37 80 chr6 29369622 29370266 -153044976 - LTR6A LTR ERV1 0 564 1 633 174 106 8 chr6 29370385 29370517 -153044725 - MLT1G1 LTR MaLR -3 592 448 266 293 13 0 chr6 29370511 29370586 -153044656 - MLT1B LTR MaLR -197 345 270 * 719 214 17 17 chr6 29370813 29370986 -153044256 + L1M4 LINE L1 2283 2455 -3691 758 145 0 99 chr6 29370988 29371140 -153044102 + MLT1B LTR MaLR 1 137 -253 626 164 90 8 chr6 29371168 29371302 -153043940 - MLT1B LTR MaLR -245 145 1 347 71 0 0 chr6 29371506 29371548 -153043694 - 5S rRNA rRNA -79 42 1 672 221 14 0 chr6 29371992 29372132 -153043110 - MER41E LTR ERV1 -355 157 16 1220 132 0 77 chr6 29372743 29372963 -153042279 + AluJo SINE Alu 100 302 -10 184 270 0 0 chr6 29373017 29373054 -153042188 + MIR SINE MIR 112 148 -114 2095 170 86 30 chr6 29373083 29373547 -153041695 + LTR2B LTR ERV1 1 490 0 8668 43 0 0 chr6 29373636 29374605 -153040637 - LTR5 LTR ERVK 0 969 1 1934 242 44 8 chr6 29374928 29375360 -153039882 + MER41E LTR ERV1 21 473 -39 180 0 0 0 chr6 29375360 29375380 -153039862 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1934 242 44 8 chr6 29375380 29375422 -153039820 + MER41E LTR ERV1 473 512 0 3443 114 15 34 chr6 29375460 29375993 -153039249 - MER1A DNA MER1_type -4 523 1 186 133 0 0 chr6 29376183 29376213 -153039029 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr6 29376982 29377008 -153038234 + (CAA)n Simple_repeat Simple_repeat 2 27 0 633 14 0 0 chr6 29377061 29377133 -153038109 + tRNA-Met-i tRNA tRNA 1 72 -3 24 0 0 0 chr6 29377215 29377239 -153038003 + AT_rich Low_complexity Low_complexity 1 24 0 228 35 0 0 chr6 29377239 29377268 -153037974 + (TC)n Simple_repeat Simple_repeat 2 30 0 459 310 180 8 chr6 29377381 29377636 -153037606 + Charlie2b DNA MER1_type 834 1132 -1650 236 222 25 37 chr6 29377942 29378023 -153037219 + L1MC4a LINE L1 5740 5819 -1989 817 250 93 7 chr6 29378025 29378305 -153036937 + L1MC4a LINE L1 5851 6154 -1654 312 143 0 0 chr6 29378324 29378380 -153036862 + MER51B-int LTR ERV1 2084 2139 -3078 * 1904 121 92 8 chr6 29378353 29378727 -153036515 + MER51B-int LTR ERV1 2340 5375 -2043 461 120 109 11 chr6 29378726 29378818 -153036424 + MER51B-int LTR ERV1 5249 5349 -2188 * 624 163 93 16 chr6 29378808 29378937 -153036305 + MER51B-int LTR ERV1 5620 5758 -1779 8177 125 33 1 chr6 29380335 29381650 -153033592 + MER51B-int LTR ERV1 5744 7147 -390 615 234 15 0 chr6 29381650 29381787 -153033455 + LTR54B LTR ERV1 3 141 -357 2478 127 3 0 chr6 29381787 29382133 -153033109 + MER51B-int LTR ERV1 7470 7816 0 2247 114 77 3 chr6 29382134 29382485 -153032757 + MER51B LTR ERV1 1 377 0 299 275 90 76 chr6 29382517 29382612 -153032630 + L1MC4a LINE L1 6055 6147 -1661 2176 133 0 0 chr6 29382612 29382914 -153032328 - AluSx SINE Alu -10 302 1 299 275 90 76 chr6 29382914 29383029 -153032213 + L1MC4a LINE L1 6147 6268 -1540 948 227 32 141 chr6 29383228 29383454 -153031788 + L1MC4 LINE L1 6418 6667 -1375 2015 123 17 3 chr6 29383454 29383747 -153031495 - AluSx SINE Alu -15 297 1 948 227 32 141 chr6 29383747 29384088 -153031154 + L1MC4 LINE L1 6667 6923 -1119 1928 97 0 19 chr6 29384092 29384361 -153030881 + AluSc SINE Alu 34 297 -12 860 171 80 0 chr6 29384405 29384581 -153030661 - LTR47A LTR ERVL -2 450 261 529 256 30 6 chr6 29384831 29384995 -153030247 + L1MC4 LINE L1 6958 7125 -917 188 292 21 52 chr6 29385373 29385469 -153029773 + L2 LINE L2 3210 3302 -11 216 0 0 0 chr6 29386584 29386608 -153028634 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2469 53 0 7 chr6 29386951 29387251 -153027991 - AluY SINE Alu -13 298 1 1923 138 34 0 chr6 29387362 29387660 -153027582 - AluSx SINE Alu -4 308 1 2380 72 0 0 chr6 29387707 29387997 -153027245 + AluSc SINE Alu 1 290 -19 206 318 24 0 chr6 29388382 29388467 -153026775 + GA-rich Low_complexity Low_complexity 2 88 0 1879 104 0 8 chr6 29389071 29389330 -153025912 - AluSc SINE Alu -52 257 1 685 285 64 37 chr6 29389779 29390344 -153024898 - Charlie2 DNA MER1_type -38 2824 2245 605 42 0 0 chr6 29390533 29390604 -153024638 - tRNA-Gln-CAA tRNA tRNA -4 71 1 310 322 34 0 chr6 29390797 29390915 -153024327 - MIR SINE MIR -20 242 121 21 0 0 0 chr6 29392614 29392635 -153022607 + AT_rich Low_complexity Low_complexity 1 21 0 2121 100 31 17 chr6 29392768 29393059 -153022183 - AluSx SINE Alu -17 295 1 259 217 0 0 chr6 29394533 29394579 -153020663 + tRNA-Ser-AGC tRNA tRNA 33 78 -7 659 27 0 0 chr6 29395035 29395109 -153020133 - tRNA-Gln-CAA tRNA tRNA -1 74 1 512 272 70 6 chr6 29395195 29395353 -153019889 + MER20B DNA MER1_type 5 172 -611 215 211 77 0 chr6 29395495 29395547 -153019695 - L2 LINE L2 -511 2803 2748 1435 235 95 28 chr6 29395547 29395938 -153019304 + MLT1G LTR MaLR 172 588 -2 4272 71 15 121 chr6 29395971 29396089 -153019153 + MER4A LTR ERV1 2 131 -533 702 0 0 0 chr6 29396089 29396167 -153019075 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 4272 71 15 121 chr6 29396167 29396183 -153019059 + MER4A LTR ERV1 131 147 -517 835 97 8 15 chr6 29396183 29396317 -153018925 + FLAM_C SINE Alu 1 133 0 4272 71 15 121 chr6 29396317 29396923 -153018319 + MER4A LTR ERV1 147 664 0 556 304 157 15 chr6 29397472 29397874 -153017368 + L2 LINE L2 2843 3301 -12 2175 114 0 0 chr6 29398043 29398348 -153016894 - AluSx SINE Alu 0 305 1 227 367 23 8 chr6 29398364 29398492 -153016750 - MIR SINE MIR -65 197 68 205 51 51 0 chr6 29398551 29398590 -153016652 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2211 101 16 13 chr6 29398956 29399263 -153015979 + AluSx SINE Alu 1 308 -4 2385 85 0 13 chr6 29399357 29399662 -153015580 + AluSx SINE Alu 1 301 -11 5222 75 25 3 chr6 29399711 29400387 -153014855 + LTR8 LTR ERV1 1 691 0 2176 96 7 0 chr6 29400798 29401121 -153014121 + AluSx SINE Alu 1 325 0 874 225 86 94 chr6 29401234 29401629 -153013613 + MSTD LTR MaLR 1 392 -4 2186 101 0 26 chr6 29402068 29402374 -153012868 - AluSx SINE Alu -14 298 1 2334 85 3 0 chr6 29402379 29402674 -153012568 - AluSp SINE Alu -17 296 1 396 0 0 0 chr6 29402702 29402746 -153012496 + (CA)n Simple_repeat Simple_repeat 1 44 0 1641 231 25 0 chr6 29402870 29403195 -153012047 - MLT1A1 LTR MaLR -2 363 31 2324 89 13 0 chr6 29403456 29403759 -153011483 + AluSq SINE Alu 1 307 -6 258 280 0 40 chr6 29404577 29404652 -153010590 - L1MC/D LINE L1 -1907 5901 5830 695 264 11 77 chr6 29404656 29404740 -153010502 + MIR SINE MIR 4 92 -170 2083 157 117 15 chr6 29404740 29405141 -153010101 - MER65A LTR ERV1 -3 442 1 695 264 11 77 chr6 29405141 29405317 -153009925 + MIR SINE MIR 92 247 -15 627 250 159 17 chr6 29405356 29405588 -153009654 - L1MC/D LINE L1 -2023 5785 5521 1977 135 0 0 chr6 29405826 29406114 -153009128 - AluJb SINE Alu -20 292 5 513 207 165 0 chr6 29408748 29409024 -153006218 + MER33 DNA MER1_type 1 362 -1 242 304 216 6 chr6 29410470 29410641 -153004601 + L2 LINE L2 3107 3313 0 26 50 0 0 chr6 29411153 29411193 -153004049 + AT_rich Low_complexity Low_complexity 1 40 0 1712 116 0 8 chr6 29411670 29411912 -153003330 + AluSg/x SINE Alu 68 307 -3 2100 135 10 0 chr6 29412046 29412350 -153002892 + AluJo SINE Alu 1 307 -5 738 93 19 0 chr6 29413190 29413298 -153001944 + AluSq/x SINE Alu 2 111 -202 186 43 0 0 chr6 29413341 29413364 -153001878 + (A)n Simple_repeat Simple_repeat 1 23 0 2039 140 7 0 chr6 29414763 29415071 -153000171 - AluSx SINE Alu -2 310 1 566 247 35 29 chr6 29415072 29415242 -153000000 - MER4D LTR ERV1 -26 877 707 2135 92 7 20 chr6 29415246 29415538 -152999704 + AluSx SINE Alu 3 290 -22 2263 189 93 42 chr6 29415971 29416584 -152998658 - LTR48B LTR ERV1 0 644 1 2000 146 7 0 chr6 29416675 29416970 -152998272 + AluSx SINE Alu 1 297 -15 1853 152 3 14 chr6 29417019 29417309 -152997933 - AluJb SINE Alu -25 287 1 198 0 0 0 chr6 29417739 29417761 -152997481 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2147 122 0 10 chr6 29417761 29418049 -152997193 - AluSx SINE Alu -27 285 1 2558 73 0 0 chr6 29418504 29418807 -152996435 - AluY SINE Alu -8 303 1 2680 174 40 29 chr6 29418869 29419419 -152995823 + MER34B LTR ERV1 10 565 0 2057 103 48 3 chr6 29419648 29419938 -152995304 + AluSg SINE Alu 1 303 -7 23 97 0 0 chr6 29420112 29420184 -152995058 + AT_rich Low_complexity Low_complexity 1 72 0 1378 247 65 53 chr6 29420671 29421161 -152994081 - MER21B LTR ERV1 -123 740 245 2709 113 75 0 chr6 29421161 29421585 -152993657 - MER39B LTR ERV1 0 653 198 2089 151 0 0 chr6 29421594 29421906 -152993336 - AluSx SINE Alu 0 312 1 28 0 0 0 chr6 29422781 29422809 -152992433 + AT_rich Low_complexity Low_complexity 1 28 0 645 191 7 22 chr6 29422859 29422995 -152992247 - AluJo SINE Alu -176 136 3 1717 102 45 4 chr6 29423984 29424228 -152991014 - AluSc SINE Alu -22 287 34 1416 188 238 0 chr6 29424296 29424717 -152990525 - L1MA9 LINE L1 -55 6257 5737 234 0 0 0 chr6 29424995 29425021 -152990221 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4748 126 40 19 chr6 29425021 29425801 -152989441 - LTR5 LTR ERVK -172 797 2 6143 69 21 72 chr6 29425802 29427690 -152987552 - SVA Other Other -519 936 8 323 132 15 0 chr6 29427796 29427864 -152987378 + (TA)n Simple_repeat Simple_repeat 2 70 0 1663 172 32 7 chr6 29427864 29428149 -152987093 - AluSx SINE Alu -20 292 1 334 214 16 87 chr6 29428286 29428412 -152986830 + MIR SINE MIR 77 193 -69 521 119 24 0 chr6 29428413 29428497 -152986745 + BC200 scRNA scRNA 5 90 -110 219 36 0 0 chr6 29428651 29428679 -152986563 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1686 163 4 4 chr6 29428684 29428954 -152986288 - AluSx SINE Alu -42 270 1 194 118 88 0 chr6 29429454 29429488 -152985754 + MER5B DNA MER1_type 74 110 -68 622 200 103 0 chr6 29429947 29430112 -152985130 + AluJo SINE Alu 2 183 -129 28 29 0 0 chr6 29431346 29431381 -152983861 + AT_rich Low_complexity Low_complexity 1 35 0 2124 106 3 3 chr6 29431620 29431912 -152983330 - AluSc SINE Alu -15 294 3 2319 87 0 13 chr6 29432044 29432354 -152982888 - AluSg SINE Alu -4 306 1 511 224 130 84 chr6 29432608 29432907 -152982335 + LTR29 LTR ERV1 1 313 -309 2023 121 7 3 chr6 29432907 29433197 -152982045 + AluSq SINE Alu 6 296 -17 836 169 0 68 chr6 29433197 29433374 -152981868 + AluSg/x SINE Alu 134 298 -14 783 226 60 24 chr6 29433379 29433631 -152981611 + LTR48B LTR ERV1 348 608 -36 552 94 13 188 chr6 29433700 29433849 -152981393 + FLAM_A SINE Alu 20 142 0 22 35 0 0 chr6 29434010 29434039 -152981203 + AT_rich Low_complexity Low_complexity 1 29 0 606 137 21 0 chr6 29434053 29434148 -152981094 + LTR29 LTR ERV1 1 97 -525 680 143 118 18 chr6 29434194 29434468 -152980774 + LTR49 LTR ERV1 227 566 -29 22 35 0 0 chr6 29434963 29434992 -152980250 + AT_rich Low_complexity Low_complexity 1 29 0 299 294 39 10 chr6 29435645 29435747 -152979495 + L2 LINE L2 3200 3304 -9 1232 157 96 9 chr6 29435972 29436201 -152979041 - AluJo SINE Alu -27 285 37 2959 157 73 36 chr6 29436210 29436842 -152978400 - MER51D LTR ERV1 -2 655 1 2056 109 14 3 chr6 29438390 29438683 -152976559 + AluSq SINE Alu 13 308 -5 765 172 0 0 chr6 29439800 29439969 -152975273 + FLAM_C SINE Alu 2 170 0 2242 112 0 3 chr6 29440216 29440520 -152974722 - AluSg SINE Alu -7 303 1 249 102 51 17 chr6 29441205 29441264 -152973978 + (TATG)n Simple_repeat Simple_repeat 2 62 0 384 111 0 0 chr6 29442095 29442158 -152973084 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 0 0 0 chr6 29442242 29442262 -152972980 + (T)n Simple_repeat Simple_repeat 1 20 0 209 33 33 0 chr6 29442479 29442509 -152972733 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 2251 115 0 0 chr6 29442842 29443137 -152972105 + AluSx SINE Alu 3 297 -15 1670 263 111 27 chr6 29443619 29444284 -152970958 - MER20B DNA MER1_type 0 783 63 2566 71 3 0 chr6 29445781 29446089 -152969153 + AluY SINE Alu 2 310 -1 555 294 129 26 chr6 29446224 29446639 -152968603 + L2 LINE L2 2565 3031 -282 220 156 44 0 chr6 29447367 29447412 -152967830 + L2 LINE L2 3267 3313 0 221 300 0 14 chr6 29447416 29447486 -152967756 + CT-rich Low_complexity Low_complexity 1 69 0 369 0 0 0 chr6 29447488 29447529 -152967713 + (CA)n Simple_repeat Simple_repeat 2 42 0 196 296 0 28 chr6 29447588 29447659 -152967583 + MIR3 SINE MIR 113 181 -27 806 206 6 12 chr6 29447910 29448075 -152967167 + FRAM SINE Alu 1 163 -13 2315 95 7 0 chr6 29448268 29448562 -152966680 + AluSp SINE Alu 1 296 -17 353 234 122 0 chr6 29451175 29451282 -152963960 + Charlie1 DNA MER1_type 8 127 -2634 1119 125 144 12 chr6 29451293 29451549 -152963693 + Charlie1 DNA MER1_type 2410 2699 -62 339 186 0 0 chr6 29451732 29451791 -152963451 + Charlie1 DNA MER1_type 2703 2761 0 753 210 63 77 chr6 29452350 29452604 -152962638 + LTR48B LTR ERV1 229 534 -110 2325 71 0 3 chr6 29452604 29452898 -152962344 - AluY SINE Alu -18 293 1 753 210 63 77 chr6 29452898 29453008 -152962234 + LTR48B LTR ERV1 534 644 0 21 0 0 0 chr6 29453341 29453362 -152961880 + AT_rich Low_complexity Low_complexity 1 21 0 2268 92 3 0 chr6 29454129 29454437 -152960805 + AluSx SINE Alu 1 309 0 233 313 52 35 chr6 29454546 29454661 -152960581 - MIR SINE MIR -85 177 61 829 125 20 120 chr6 29455533 29455626 -152959616 + MLT1B LTR MaLR 1 102 -288 2643 50 0 0 chr6 29455626 29455925 -152959317 - AluY SINE Alu -5 306 8 829 125 20 120 chr6 29455925 29456000 -152959242 + MLT1B LTR MaLR 102 149 -241 2894 19 0 0 chr6 29456000 29456316 -152958926 - AluYb8 SINE Alu -2 316 1 829 125 20 120 chr6 29456316 29456346 -152958896 + MLT1B LTR MaLR 149 180 -210 458 202 0 0 chr6 29456347 29456431 -152958811 + AluJ/FLAM SINE Alu 2 85 -227 936 154 34 69 chr6 29456464 29456780 -152958462 + MLT1B LTR MaLR 169 390 0 225 301 177 0 chr6 29456821 29456934 -152958308 + MIR SINE MIR 118 250 -12 894 257 39 63 chr6 29457633 29458045 -152957197 - MER113 DNA MER1_type? 0 521 120 1091 216 125 0 chr6 29458201 29458488 -152956754 - MER2 DNA MER2_type -4 341 19 1123 204 151 48 chr6 29458700 29459092 -152956150 - MLT1F LTR MaLR -66 476 45 2090 109 3 7 chr6 29459193 29459514 -152955728 + AluSp SINE Alu 1 320 0 768 284 69 68 chr6 29460119 29460624 -152954618 + L2 LINE L2 2776 3304 -9 2079 127 0 10 chr6 29461483 29461790 -152953452 - AluSx SINE Alu -1 311 8 1873 137 3 16 chr6 29463624 29463939 -152951303 + AluSx SINE Alu 1 311 -1 1957 139 10 7 chr6 29463942 29464252 -152950990 + AluSx SINE Alu 2 312 0 1387 182 76 4 chr6 29465209 29465484 -152949758 + AluJb SINE Alu 1 295 -17 488 230 71 0 chr6 29468080 29468193 -152947049 + MER58 DNA MER1_type 2 122 -93 1640 200 0 7 chr6 29468197 29468487 -152946755 + AluJb SINE Alu 1 288 -24 271 211 0 35 chr6 29468513 29468570 -152946672 + MER58 DNA MER1_type 2342 2396 -24 293 315 9 19 chr6 29468858 29468966 -152946276 - MIR SINE MIR -123 139 33 624 118 0 0 chr6 29469182 29469267 -152945975 - MER30B DNA MER1_type -5 185 101 301 42 21 21 chr6 29469269 29469279 -152945963 + (TTCC)n Simple_repeat Simple_repeat 3 12 -38 1855 87 116 29 chr6 29469279 29469555 -152945687 - AluSg SINE Alu -6 304 5 301 42 21 21 chr6 29469555 29469592 -152945650 + (TTCC)n Simple_repeat Simple_repeat 11 50 0 699 113 19 0 chr6 29469592 29469698 -152945544 - MER30B DNA MER1_type -78 112 5 418 253 173 19 chr6 29470257 29470419 -152944823 - L1PB4 LINE L1 -23 6133 5947 1733 90 16 12 chr6 29470439 29470695 -152944547 - AluSc SINE Alu -16 293 37 427 243 111 22 chr6 29471971 29472152 -152943090 - MER58A DNA MER1_type -1 223 27 230 26 263 0 chr6 29472658 29472696 -152942546 + LTR10B LTR ERV1 210 257 -290 1868 107 13 47 chr6 29473532 29473830 -152941412 + AluSg SINE Alu 1 288 -22 2106 92 6 78 chr6 29474107 29474442 -152940800 - AluSq SINE Alu -2 311 1 1017 83 0 0 chr6 29474444 29474576 -152940666 - AluY SINE Alu -178 133 2 328 109 0 0 chr6 29474686 29474741 -152940501 - AluJb SINE Alu 0 302 248 1127 196 0 25 chr6 29474741 29474945 -152940297 - AluJb SINE Alu -113 199 1 2868 13 0 3 chr6 29475051 29475363 -152939879 + AluYa5 SINE Alu 1 311 0 1560 173 4 4 chr6 29475518 29475784 -152939458 + AluSx SINE Alu 47 312 0 22 56 0 0 chr6 29475849 29475885 -152939357 + AT_rich Low_complexity Low_complexity 1 36 0 2334 73 0 17 chr6 29475910 29476212 -152939030 + AluSc SINE Alu 1 297 -12 645 135 19 0 chr6 29476395 29476499 -152938743 - LTR8 LTR ERV1 -23 668 563 336 158 0 40 chr6 29476500 29476576 -152938666 - LTR30 LTR ERV1 -98 624 552 3430 111 60 0 chr6 29479248 29479616 -152935626 - LTR8 LTR ERV1 -157 534 127 2005 104 0 0 chr6 29479616 29479885 -152935357 - AluSg SINE Alu -17 293 25 3430 111 60 0 chr6 29479885 29480020 -152935222 - LTR8 LTR ERV1 -564 127 1 278 98 20 0 chr6 29480229 29480280 -152934962 + (CA)n Simple_repeat Simple_repeat 1 52 0 1990 118 30 7 chr6 29480529 29480833 -152934409 - AluSx SINE Alu -1 311 1 817 219 6 0 chr6 29480884 29481048 -152934194 + FRAM SINE Alu 1 165 -1 1454 116 132 0 chr6 29481120 29481418 -152933824 - AluSp SINE Alu 0 331 1 1852 106 58 4 chr6 29481484 29481758 -152933484 - AluSx SINE Alu -23 289 1 267 128 64 0 chr6 29481831 29481878 -152933364 - LTR24C LTR ERV1 -2 633 584 736 95 0 95 chr6 29481880 29481937 -152933305 + FLAM_C SINE Alu 2 63 -249 4064 87 30 0 chr6 29481937 29482475 -152932767 + MER41A LTR ERV1 1 554 0 736 95 0 95 chr6 29482475 29482554 -152932688 + FLAM_C SINE Alu 63 125 -187 1748 149 159 25 chr6 29482563 29482965 -152932277 - LTR24C LTR ERV1 -36 599 144 * 2700 155 16 79 chr6 29482933 29483044 -152932198 - LTR29 LTR ERV1 -50 572 456 2534 66 0 3 chr6 29483044 29483347 -152931895 - AluY SINE Alu -9 302 1 2747 45 0 0 chr6 29483355 29483666 -152931576 - AluY SINE Alu 0 311 1 2700 155 16 79 chr6 29483666 29483901 -152931341 - LTR29 LTR ERV1 -173 449 268 2538 69 0 3 chr6 29483901 29484207 -152931035 - AluSp SINE Alu -8 305 1 2700 155 16 79 chr6 29484207 29484458 -152930784 - LTR29 LTR ERV1 -354 268 3 1597 126 55 11 chr6 29484458 29484717 -152930525 - LTR24B LTR ERV1 -286 290 17 1991 110 45 3 chr6 29484717 29485009 -152930233 - AluSc SINE Alu -5 304 1 1597 126 55 11 chr6 29485009 29485020 -152930222 - LTR24B LTR ERV1 -559 17 8 561 170 40 0 chr6 29485370 29485470 -152929772 + MLT1A1 LTR MaLR 1 104 -261 * 836 231 50 36 chr6 29485467 29485770 -152929472 + LTR48B LTR ERV1 338 644 0 597 111 0 0 chr6 29485912 29485993 -152929249 - AluSg/x SINE Alu -16 296 216 1750 136 0 11 chr6 29485994 29486258 -152928984 - AluSx SINE Alu -51 261 1 2337 71 30 3 chr6 29486351 29486648 -152928594 + AluY SINE Alu 1 305 -6 32 0 0 0 chr6 29486843 29486875 -152928367 + AT_rich Low_complexity Low_complexity 1 32 0 318 169 26 90 chr6 29487038 29487185 -152928057 - LTR49 LTR ERV1 -16 740 508 3006 159 20 4 chr6 29487187 29487691 -152927551 - MER41E LTR ERV1 0 512 1 698 202 69 95 chr6 29487846 29488220 -152927022 - LTR49 LTR ERV1 -292 303 5 229 121 0 0 chr6 29488191 29488224 -152927018 - MER34B LTR ERV1 -532 33 1 * 212 350 10 29 chr6 29488265 29488368 -152926874 - MIR SINE MIR -6 256 156 1387 162 128 25 chr6 29488371 29488560 -152926682 + LTR49 LTR ERV1 1 169 -453 1486 190 35 10 chr6 29488560 29488850 -152926392 - AluJo SINE Alu -11 301 5 1387 162 128 25 chr6 29488850 29489142 -152926100 + LTR49 LTR ERV1 169 609 -13 2103 100 23 10 chr6 29490119 29490420 -152924822 - AluSx SINE Alu -7 305 1 1093 161 92 65 chr6 29491086 29491242 -152924000 - AluJo SINE Alu -2 300 131 2039 81 53 3 chr6 29491242 29491527 -152923715 - AluSc SINE Alu -10 299 1 1093 161 92 65 chr6 29491527 29491662 -152923580 - AluJo SINE Alu -171 131 1 2018 134 7 3 chr6 29493312 29493617 -152921625 - AluSg1 SINE Alu -3 306 1 485 172 86 66 chr6 29495205 29495323 -152919919 - MLT1B LTR MaLR -236 154 31 1688 124 113 15 chr6 29495323 29495597 -152919645 - AluSg SINE Alu -9 301 1 485 172 86 66 chr6 29495597 29495629 -152919613 - MLT1B LTR MaLR -359 31 1 494 287 24 0 chr6 29495820 29495984 -152919258 - Charlie8 DNA MER1_type -1955 462 295 407 100 17 0 chr6 29496682 29496742 -152918500 - U7 snRNA snRNA -1 62 2 22 0 0 0 chr6 29496742 29496764 -152918478 + AT_rich Low_complexity Low_complexity 1 22 0 3502 115 28 48 chr6 29496799 29497478 -152917764 + MER39B LTR ERV1 1 643 -10 1599 172 52 3 chr6 29497501 29497792 -152917450 - AluJb SINE Alu -7 305 1 325 311 0 0 chr6 29497813 29497903 -152917339 + MER34 LTR ERV1 1 90 -452 260 228 44 95 chr6 29497900 29498058 -152917184 + LTR48 LTR ERV1 160 309 -478 * 1967 186 37 16 chr6 29498673 29498858 -152916384 - MER65A LTR ERV1 0 445 265 4405 102 62 57 chr6 29498858 29499633 -152915609 + MER4E LTR ERV1 1 779 0 1967 186 37 16 chr6 29499633 29499883 -152915359 - MER65A LTR ERV1 -180 265 1 1543 115 9 5 chr6 29500237 29500455 -152914787 + AluSg/x SINE Alu 74 292 -20 336 328 61 40 chr6 29500775 29500973 -152914269 - L2 LINE L2 -10 3303 3102 1243 175 45 84 chr6 29501010 29501319 -152913923 + AluJo SINE Alu 1 297 -15 37 0 0 0 chr6 29501319 29501356 -152913886 + AT_rich Low_complexity Low_complexity 1 37 0 650 0 0 0 chr6 29501669 29501741 -152913501 - tRNA-Met-i tRNA tRNA -3 72 1 637 0 0 0 chr6 29502084 29502155 -152913087 - tRNA-Gly-GGC tRNA tRNA -3 71 1 216 189 0 0 chr6 29502563 29502600 -152912642 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 207 0 0 0 chr6 29502601 29502624 -152912618 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2103 104 3 10 chr6 29502627 29502916 -152912326 - AluSx SINE Alu -24 288 2 388 202 21 0 chr6 29502919 29503013 -152912229 - L1MEc LINE L1 -4027 2369 2274 810 240 124 103 chr6 29503560 29504044 -152911198 + MLT1D LTR MaLR 12 505 0 209 237 0 0 chr6 29504185 29504223 -152911019 - L3 LINE CR1 -23 1554 1517 501 343 60 29 chr6 29504577 29504924 -152910318 - L3 LINE CR1 -159 1418 1061 216 372 67 16 chr6 29505064 29505376 -152909866 - L3 LINE CR1 -820 757 430 5441 118 26 10 chr6 29505379 29505702 -152909540 + L1PA16 LINE L1 4124 4440 -1726 2150 66 3 78 chr6 29505702 29506022 -152909220 + AluY SINE Alu 1 296 -15 5441 118 26 10 chr6 29506022 29507726 -152907516 + L1PA16 LINE L1 4440 6166 0 2152 124 0 7 chr6 29507745 29508044 -152907198 + AluSx SINE Alu 1 297 -15 896 195 11 26 chr6 29508514 29508704 -152906538 + MER5A DNA MER1_type 1 187 -2 2332 90 3 3 chr6 29509100 29509401 -152905841 - AluSx SINE Alu -11 301 1 297 0 0 0 chr6 29509749 29509782 -152905460 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr6 29510198 29510239 -152905003 + (TG)n Simple_repeat Simple_repeat 2 42 0 2339 82 13 0 chr6 29511736 29512042 -152903200 - AluSp SINE Alu -3 310 1 1809 201 53 54 chr6 29512518 29512875 -152902367 - MER44D DNA MER2_type -1882 605 193 1285 98 53 114 chr6 29512875 29513120 -152902122 - MER30 DNA MER1_type 0 230 1 1809 201 53 54 chr6 29513120 29513313 -152901929 - MER44D DNA MER2_type -2294 193 1 28 61 0 0 chr6 29514072 29514121 -152901121 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr6 29514470 29514492 -152900750 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr6 29515514 29515552 -152899690 + AT_rich Low_complexity Low_complexity 1 38 0 821 21 0 0 chr6 29515552 29515649 -152899593 - L1PA4 LINE L1 -3 6152 6056 440 37 0 0 chr6 29515649 29515703 -152899539 + L1PA5 LINE L1 6066 6119 -35 351 297 18 18 chr6 29515789 29515900 -152899342 + MIR SINE MIR 42 152 -56 30 0 0 0 chr6 29517103 29517133 -152898109 + AT_rich Low_complexity Low_complexity 1 30 0 2270 95 10 3 chr6 29517162 29517457 -152897785 - AluSg SINE Alu -13 297 1 240 305 39 18 chr6 29518146 29518378 -152896864 + L1M1 LINE L1 5497 5735 -568 21 0 0 0 chr6 29518551 29518572 -152896670 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr6 29518717 29518750 -152896492 + GA-rich Low_complexity Low_complexity 3 35 0 228 35 0 0 chr6 29518938 29518967 -152896275 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1914 132 0 21 chr6 29518980 29519260 -152895982 - AluSx SINE Alu -38 274 1 282 336 39 0 chr6 29519468 29519596 -152895646 - MIR SINE MIR -26 236 104 186 176 0 0 chr6 29519641 29519692 -152895550 + T-rich Low_complexity Low_complexity 1 51 0 2762 260 94 17 chr6 29520119 29521388 -152893854 - L1MC4 LINE L1 -145 7897 6441 2110 218 61 17 chr6 29521491 29522243 -152892999 - L1ME2 LINE L1 -228 5936 5147 1215 243 92 32 chr6 29522334 29522737 -152892505 - MER69 DNA AcHobo -2099 427 1 22 0 0 0 chr6 29522880 29522902 -152892340 + AT_rich Low_complexity Low_complexity 1 22 0 901 146 70 49 chr6 29523000 29523185 -152892057 - BC200 scRNA scRNA -7 193 5 323 293 120 0 chr6 29523768 29523918 -152891324 + ERVL LTR ERVL 2323 2490 -3274 269 224 60 0 chr6 29523918 29523985 -152891257 + MER76 LTR ERV 595 665 -23 * 512 227 21 14 chr6 29523972 29524113 -152891129 + MLT1D LTR MaLR 362 503 -2 257 352 44 32 chr6 29524156 29524406 -152890836 + ERVL LTR ERVL 3007 3259 -2226 200 35 35 0 chr6 29524510 29524539 -152890703 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 223 214 18 0 chr6 29524570 29524626 -152890616 + (TA)n Simple_repeat Simple_repeat 1 57 0 7277 172 36 66 chr6 29524679 29524838 -152890404 - L1MC4a LINE L1 0 7808 7646 2036 133 0 7 chr6 29524838 29525138 -152890104 + AluSx SINE Alu 1 298 -14 7277 172 36 66 chr6 29525138 29526216 -152889026 - L1MC4a LINE L1 -162 7646 6646 213 39 0 0 chr6 29526216 29526242 -152889000 + (TG)n Simple_repeat Simple_repeat 1 26 0 7277 172 36 66 chr6 29526242 29526953 -152888289 - L1MC4a LINE L1 -1162 6646 5916 2148 136 0 25 chr6 29526993 29527309 -152887933 + AluSx SINE Alu 5 312 0 1767 112 59 24 chr6 29527309 29527596 -152887646 - THE1B LTR MaLR -67 297 1 12350 84 1 0 chr6 29527596 29529175 -152886067 - THE1B-int LTR MaLR 0 1580 1 2286 98 72 20 chr6 29529175 29529521 -152885721 - THE1B LTR MaLR 0 364 1 224 319 43 0 chr6 29529652 29529721 -152885521 - MIR SINE MIR -20 242 171 24 32 0 0 chr6 29531345 29531376 -152883866 + AT_rich Low_complexity Low_complexity 1 31 0 209 189 0 0 chr6 29532153 29532190 -152883052 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 355 133 15 chr6 29534333 29534536 -152880706 + MIR SINE MIR 31 257 -5 24 53 0 0 chr6 29534537 29534575 -152880667 + AT_rich Low_complexity Low_complexity 1 38 0 2015 124 0 48 chr6 29535931 29536245 -152878997 - AluSx SINE Alu -11 301 3 1671 164 25 7 chr6 29537733 29538008 -152877234 + AluJo SINE Alu 1 280 -32 603 94 19 9 chr6 29538008 29538114 -152877128 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 842 278 90 34 chr6 29540428 29540784 -152874458 - L2 LINE L2 0 3313 2938 494 227 133 0 chr6 29540796 29540946 -152874296 - L2 LINE L2 -1206 2108 1939 635 234 15 0 chr6 29541416 29541553 -152873689 + MIR SINE MIR 102 240 -22 487 302 90 19 chr6 29541644 29542021 -152873221 + L1MC/D LINE L1 4645 5048 -1098 542 261 105 4 chr6 29542150 29542388 -152872854 + L1MC/D LINE L1 5254 5515 -2293 235 243 27 40 chr6 29542388 29542462 -152872780 - MER76 LTR ERV -3 685 613 794 51 0 0 chr6 29542462 29542560 -152872682 + L1P LINE L1 1 98 -6048 * 5004 74 178 10 chr6 29542529 29543325 -152871917 + L1P LINE L1 580 1509 -4637 * 12978 23 0 2 chr6 29543320 29544855 -152870387 - L1P LINE L1 -802 5344 3813 925 344 65 38 chr6 29545157 29546132 -152869110 - ERVL LTR ERVL -1290 4195 3195 349 261 50 1 chr6 29546169 29546264 -152868978 - ERVL LTR ERVL -1901 3095 3010 306 312 9 46 chr6 29546264 29546373 -152868869 - LTR16A LTR ERVL -143 307 203 783 320 53 14 chr6 29546673 29547062 -152868180 + MLT1H LTR MaLR 1 442 -107 1377 297 88 11 chr6 29547138 29547851 -152867391 + L1M4 LINE L1 3600 4367 -1779 283 301 66 22 chr6 29549377 29549513 -152865729 + MIR SINE MIR 58 199 -63 279 308 80 34 chr6 29550194 29550457 -152864785 - L1MC/D LINE L1 -515 5727 5453 1595 139 68 4 chr6 29552533 29552799 -152862443 - AluJb SINE Alu -1 311 29 318 188 130 0 chr6 29552799 29552868 -152862374 - AluJ/FLAM SINE Alu -224 78 1 2322 108 0 0 chr6 29553262 29553558 -152861684 - AluSx SINE Alu -14 298 3 27 81 0 0 chr6 29554510 29554572 -152860670 + AT_rich Low_complexity Low_complexity 1 62 0 344 274 59 67 chr6 29554608 29554878 -152860364 - L1MC4a LINE L1 -1755 6053 5786 435 324 21 7 chr6 29555460 29555605 -152859637 - MIR SINE MIR -98 164 18 1735 64 64 0 chr6 29555730 29555963 -152859279 + L1PB1 LINE L1 5904 6151 0 333 0 0 0 chr6 29557673 29557710 -152857532 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr6 29558850 29558874 -152856368 + AT_rich Low_complexity Low_complexity 1 24 0 3751 138 44 11 chr6 29559000 29559654 -152855588 - L1MB3 LINE L1 0 6183 5508 531 165 21 0 chr6 29559904 29560001 -152855241 + FLAM_C SINE Alu 38 136 -7 451 339 71 51 chr6 29560229 29560448 -152854794 + L3 LINE CR1 1210 1440 -137 2187 121 0 10 chr6 29560448 29560761 -152854481 + AluSq SINE Alu 1 310 -3 451 339 71 51 chr6 29560761 29560895 -152854347 + L3 LINE CR1 1440 1570 -7 1571 252 50 8 chr6 29561103 29561654 -152853588 - L1MC4a LINE L1 -406 5772 5206 600 160 19 0 chr6 29561654 29561760 -152853482 - AluSg/x SINE Alu -7 302 195 288 203 16 0 chr6 29561772 29561836 -152853406 - L1MB7 LINE L1 -9 6175 6111 311 172 16 0 chr6 29561866 29561930 -152853312 - L1MB7 LINE L1 -9 6175 6111 887 205 0 6 chr6 29561930 29562101 -152853141 + AluJb SINE Alu 137 306 -6 4074 178 44 30 chr6 29562101 29562639 -152852603 - L1MB7 LINE L1 -63 6121 5592 2105 104 62 0 chr6 29562639 29562927 -152852315 - AluSx SINE Alu -6 306 1 4074 178 44 30 chr6 29562927 29564044 -152851198 - L1MB7 LINE L1 -592 5592 4442 341 256 8 34 chr6 29564140 29564257 -152850985 - L1M4 LINE L1 -6335 207 94 338 85 0 0 chr6 29564251 29564298 -152850944 + L1MC/D LINE L1 5196 5242 -904 * 288 0 0 0 chr6 29564731 29564763 -152850479 + (TG)n Simple_repeat Simple_repeat 2 33 0 1613 183 10 3 chr6 29564773 29565085 -152850157 + L1MC/D LINE L1 5255 5568 -2217 415 345 38 24 chr6 29565204 29565497 -152849745 - ERVL LTR ERVL -441 5323 5027 836 225 46 62 chr6 29565500 29565937 -152849305 - MLT1F LTR MaLR -5 537 94 2002 185 93 83 chr6 29565937 29566578 -152848664 - MER52A LTR ERV1 0 1755 586 1547 219 159 73 chr6 29566568 29567198 -152848044 - MER52A LTR ERV1 -406 1349 666 * 219 239 127 0 chr6 29567421 29567492 -152847750 + L2 LINE L2 3150 3229 -43 8434 157 28 32 chr6 29568651 29570367 -152844875 + L1MA6 LINE L1 3602 5309 -857 3892 142 42 32 chr6 29570385 29570597 -152844645 + L1MA6 LINE L1 5383 5592 -708 308 93 0 19 chr6 29570597 29570651 -152844591 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3892 142 42 32 chr6 29570651 29571179 -152844063 + L1MA6 LINE L1 5592 6130 -170 939 103 21 77 chr6 29571238 29571333 -152843909 + L1MA6 LINE L1 6115 6195 -105 2209 94 10 7 chr6 29571333 29571630 -152843612 - AluSg SINE Alu -12 298 1 939 103 21 77 chr6 29571630 29571728 -152843514 + L1MA6 LINE L1 6195 6297 -3 38 68 0 0 chr6 29571890 29571963 -152843279 + AT_rich Low_complexity Low_complexity 1 73 0 21 57 0 0 chr6 29571975 29572010 -152843232 + AT_rich Low_complexity Low_complexity 1 35 0 516 105 0 0 chr6 29572064 29572140 -152843102 + (CA)n Simple_repeat Simple_repeat 2 77 0 621 322 68 11 chr6 29572164 29572617 -152842625 - L1MC/D LINE L1 -2011 5797 5319 2284 91 3 0 chr6 29572909 29573207 -152842035 - AluY SINE Alu -12 299 1 30 77 0 0 chr6 29573586 29573651 -152841591 + AT_rich Low_complexity Low_complexity 1 65 0 525 329 74 55 chr6 29575230 29575660 -152839582 + L3 LINE CR1 832 1278 -299 1675 151 0 47 chr6 29575660 29575983 -152839259 + AluJb SINE Alu 1 309 0 525 329 74 55 chr6 29575983 29576131 -152839111 + L3 LINE CR1 1278 1422 -155 1576 180 56 28 chr6 29577482 29577876 -152837366 - LTR37A LTR ERV1 -18 408 4 245 247 62 96 chr6 29578340 29578486 -152836756 + L2 LINE L2 3151 3291 -22 1908 137 11 3 chr6 29580701 29580986 -152834256 - AluJb SINE Alu -23 289 3 1930 148 0 3 chr6 29581932 29582222 -152833020 - AluSq SINE Alu -24 289 1 249 327 46 14 chr6 29582412 29582580 -152832662 + MIR SINE MIR 6 176 -66 313 289 72 11 chr6 29584241 29584421 -152830821 + L1ME3A LINE L1 5767 5957 -213 953 307 87 50 chr6 29584663 29585399 -152829843 + HAL1 LINE L1 123 885 -1622 801 251 191 12 chr6 29585710 29586227 -152829015 + L1ME LINE L1 4424 5033 -1113 955 275 36 75 chr6 29586231 29586803 -152828439 - MLT1G LTR MaLR 0 590 71 965 251 44 19 chr6 29586850 29587376 -152827866 + L1ME LINE L1 5078 5610 -554 238 207 0 17 chr6 29587376 29587434 -152827808 - MLT1G LTR MaLR 0 590 534 922 133 8 0 chr6 29587460 29587588 -152827654 - FLAM_C SINE Alu -14 129 1 236 266 84 56 chr6 29587602 29587745 -152827497 - MLT1G LTR MaLR -77 478 332 340 194 11 65 chr6 29587972 29588065 -152827177 + L1ME LINE L1 5603 5690 -474 1407 234 172 0 chr6 29588074 29588493 -152826749 - MER110 LTR ERV1 0 491 1 402 259 202 6 chr6 29589206 29589386 -152825856 - MIR SINE MIR -33 229 18 1539 193 21 26 chr6 29589761 29590124 -152825118 - MLT1A1 LTR MaLR -1 364 1 351 345 81 8 chr6 29590126 29590372 -152824870 - L2 LINE L2 -590 2724 2461 2149 124 0 16 chr6 29590411 29590717 -152824525 + AluSq SINE Alu 1 301 -12 518 158 55 62 chr6 29591507 29591653 -152823589 - L1MC1 LINE L1 0 6333 6189 * 5111 177 25 10 chr6 29591648 29592633 -152822609 - L1MC1 LINE L1 -1 6332 5328 2125 118 17 0 chr6 29592633 29592921 -152822321 - AluSx SINE Alu -17 295 3 5111 177 25 10 chr6 29592921 29592993 -152822249 - L1MC1 LINE L1 -1005 5328 5259 2299 116 31 0 chr6 29593401 29593728 -152821514 + MER1B DNA MER1_type 1 337 0 1415 209 11 27 chr6 29594713 29595095 -152820147 - MLT1A1 LTR MaLR -2 363 1 626 181 116 4 chr6 29595179 29595411 -152819831 + L1MEc LINE L1 2010 2267 -4129 * 2651 240 104 35 chr6 29595394 29595464 -152819778 + L1MEc LINE L1 3091 3155 -3060 2081 149 0 0 chr6 29595464 29595773 -152819469 + AluSx SINE Alu 1 309 -3 2651 240 104 35 chr6 29595773 29596915 -152818327 + L1MEc LINE L1 3155 4386 -1829 2026 153 0 0 chr6 29596926 29597221 -152818021 + AluSx SINE Alu 1 295 -17 232 272 29 29 chr6 29597259 29597362 -152817880 - MLT1H LTR MaLR -381 168 66 240 30 0 0 chr6 29597465 29597498 -152817744 + L1MA3 LINE L1 6250 6282 -23 4167 110 96 32 chr6 29597498 29598236 -152817006 - LTR1 LTR ERV1 0 785 1 2309 142 183 37 chr6 29599688 29600223 -152815019 + LTR18B LTR ERVL 2 614 0 1354 201 0 0 chr6 29600244 29600517 -152814725 + HERVL18 LTR ERVL 19 291 -5756 680 176 8 0 chr6 29600547 29600672 -152814570 + HERVL18 LTR ERVL 541 666 -5381 1029 205 3 67 chr6 29600700 29601084 -152814158 + HERVL18 LTR ERVL 1388 1810 -4237 582 178 17 9 chr6 29601083 29601304 -152813938 + HERVL18 LTR ERVL 2119 2450 -3597 * 3471 162 53 90 chr6 29601305 29602102 -152813140 + HERVL18 LTR ERVL 2720 3486 -2561 2265 135 191 41 chr6 29602232 29602766 -152812476 + LTR18B LTR ERVL 1 614 0 1346 248 39 14 chr6 29602775 29603206 -152812036 - MER41E LTR ERV1 -48 464 23 380 188 0 62 chr6 29603499 29603595 -152811647 + LTR38B LTR ERV1 1 90 -520 4658 102 23 12 chr6 29604014 29604697 -152810545 + LTR8 LTR ERV1 1 691 0 1204 249 75 27 chr6 29605169 29605610 -152809632 - MLT1C LTR MaLR 0 467 6 1478 247 52 30 chr6 29605618 29605983 -152809259 + L1M4 LINE L1 3371 3753 -2393 2227 93 0 32 chr6 29605983 29606294 -152808948 + AluSc SINE Alu 9 309 0 1478 247 52 30 chr6 29606294 29606467 -152808775 + L1M4 LINE L1 3753 3921 -2225 958 105 0 0 chr6 29606468 29606592 -152808650 - AluSp/q SINE Alu -17 296 173 1055 180 5 0 chr6 29606592 29606814 -152808428 + L1MC3 LINE L1 7555 7777 -8 1964 135 7 20 chr6 29606855 29607152 -152808090 - AluSx SINE Alu -19 293 1 305 270 102 35 chr6 29607359 29607415 -152807827 - L1M4 LINE L1 -1739 4407 4356 5002 170 39 10 chr6 29607415 29608291 -152806951 + MER54A LTR ERVL 1 901 0 305 270 102 35 chr6 29608291 29608490 -152806752 - L1M4 LINE L1 -1790 4356 4140 2200 131 0 0 chr6 29608637 29608942 -152806300 - AluSx SINE Alu -7 305 1 442 342 26 4 chr6 29609411 29609639 -152805603 - HERVL LTR ERVL -1857 3797 3565 318 111 0 37 chr6 29609687 29609741 -152805501 - HERVL LTR ERVL -2106 2890 2839 2105 326 29 33 chr6 29612107 29612889 -152802353 - HERVL LTR ERVL -2128 2868 2090 1625 211 48 81 chr6 29612889 29613411 -152801831 + MLT1D LTR MaLR 1 505 0 2105 326 29 33 chr6 29613411 29613784 -152801458 - HERVL LTR ERVL -2906 2090 1717 581 183 40 0 chr6 29613829 29613955 -152801287 + L1MC4 LINE L1 6822 6952 -1090 573 157 25 0 chr6 29613952 29614073 -152801169 + L1MD3 LINE L1 7870 7993 -2 * 1920 186 230 24 chr6 29614075 29614178 -152801064 + L1MC4 LINE L1 6939 7019 -1023 267 31 0 0 chr6 29614178 29614210 -152801032 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 1920 186 230 24 chr6 29614210 29614744 -152800498 + L1MC4 LINE L1 7019 7708 -334 974 214 34 0 chr6 29614744 29614950 -152800292 + U3 snRNA snRNA 1 213 -4 180 0 0 0 chr6 29614976 29614996 -152800246 + (CAA)n Simple_repeat Simple_repeat 2 21 0 960 121 15 0 chr6 29615030 29615162 -152800080 + AluJb SINE Alu 1 134 -178 22 56 0 0 chr6 29615165 29615201 -152800041 + AT_rich Low_complexity Low_complexity 1 36 0 381 226 75 9 chr6 29615203 29615412 -152799830 + L1MC4 LINE L1 7724 8029 -13 29 0 0 0 chr6 29617215 29617244 -152797998 + AT_rich Low_complexity Low_complexity 1 29 0 318 26 0 0 chr6 29617281 29617320 -152797922 + (CA)n Simple_repeat Simple_repeat 2 40 0 238 394 71 26 chr6 29617646 29617872 -152797370 + L2 LINE L2 2586 2821 -493 363 402 16 35 chr6 29617974 29618230 -152797012 + L2 LINE L2 2997 3247 -25 259 294 122 42 chr6 29618721 29618935 -152796307 - MIR SINE MIR -2 260 30 35 0 0 0 chr6 29618952 29618987 -152796255 + AT_rich Low_complexity Low_complexity 1 35 0 449 304 120 0 chr6 29619375 29619559 -152795683 - MIR SINE MIR -49 213 8 261 300 67 17 chr6 29619592 29619712 -152795530 - L2 LINE L2 -1007 2307 2182 42692 35 1 1 chr6 29619934 29626089 -152789153 + L1PA3 LINE L1 1 6152 -3 29 28 0 0 chr6 29626089 29626125 -152789117 + AT_rich Low_complexity Low_complexity 1 36 0 515 311 77 0 chr6 29626138 29626334 -152788908 - MIR SINE MIR -3 259 49 2381 81 0 13 chr6 29626560 29626858 -152788384 - AluSq SINE Alu -19 294 1 24 77 0 0 chr6 29626911 29626963 -152788279 + AT_rich Low_complexity Low_complexity 1 52 0 12930 113 84 37 chr6 29627581 29628100 -152787142 + Tigger1 DNA MER2_type 1 494 -1924 2248 45 38 0 chr6 29628100 29628388 -152786854 + L1PA4 LINE L1 5854 6152 -3 12930 113 84 37 chr6 29628388 29630176 -152785066 + Tigger1 DNA MER2_type 494 2418 0 1194 153 5 0 chr6 29630178 29630367 -152784875 + Tigger7 DNA MER2_type 1 190 -2297 354 281 241 5 chr6 29630603 29630802 -152784440 + MIR SINE MIR 10 255 -7 354 288 80 8 chr6 29630840 29630965 -152784277 + L2 LINE L2 3179 3312 -1 21 0 0 0 chr6 29631239 29631260 -152783982 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr6 29631938 29631970 -152783272 + AT_rich Low_complexity Low_complexity 1 32 0 542 284 168 17 chr6 29632569 29632914 -152782328 + L1ME4a LINE L1 5724 6120 -1 186 209 0 0 chr6 29634577 29634620 -152780622 + (TA)n Simple_repeat Simple_repeat 1 43 0 2361 39 0 3 chr6 29635386 29635672 -152779570 + L1PA5 LINE L1 5854 6138 -16 1071 182 0 11 chr6 29635689 29635876 -152779366 + AluJb SINE Alu 120 304 -8 369 122 8 0 chr6 29635990 29636078 -152779164 - AluJ/FRAM SINE Alu 0 309 230 208 277 0 0 chr6 29636386 29636433 -152778809 + L2 LINE L2 3267 3313 0 33 73 0 0 chr6 29636441 29636509 -152778733 + AT_rich Low_complexity Low_complexity 1 68 0 253 286 41 0 chr6 29636870 29636968 -152778274 - HAL1 LINE L1 -1027 1480 1379 2112 72 0 0 chr6 29637081 29637343 -152777899 - AluY SINE Alu -17 294 33 301 272 91 78 chr6 29637344 29637587 -152777655 - L1MEd LINE L1 -4956 1163 918 1533 131 0 13 chr6 29638356 29638592 -152776650 - AluJb SINE Alu -17 295 63 188 324 54 0 chr6 29639601 29639675 -152775567 - L2 LINE L2 -45 3227 3150 394 352 114 26 chr6 29640208 29640899 -152774343 - L2 LINE L2 -751 2563 1812 2178 92 0 0 chr6 29641377 29641695 -152773547 - AluSx SINE Alu 0 318 1 576 221 25 13 chr6 29643045 29643203 -152772039 + MLT1C LTR MaLR 1 160 -307 753 181 7 0 chr6 29643214 29643352 -152771890 + FRAM SINE Alu 21 159 -17 886 161 6 6 chr6 29643359 29643539 -152771703 + GA-rich Low_complexity Low_complexity 1 180 0 315 248 17 8 chr6 29643514 29643631 -152771611 + A-rich Low_complexity Low_complexity 4 121 0 * 642 184 0 0 chr6 29643644 29643769 -152771473 + GA-rich Low_complexity Low_complexity 4 128 0 1065 244 15 7 chr6 29643775 29644045 -152771197 + MLT1C LTR MaLR 196 467 0 181 341 106 0 chr6 29644613 29644698 -152770544 - MIR SINE MIR -78 130 37 184 222 74 19 chr6 29644918 29644972 -152770270 - L2 LINE L2 -1 3312 3256 406 303 136 13 chr6 29645265 29645420 -152769822 + MIR SINE MIR 52 225 -37 397 196 58 116 chr6 29646628 29646766 -152768476 - L2 LINE L2 -8 3305 3176 961 231 73 15 chr6 29646788 29647117 -152768125 + L1ME3A LINE L1 5772 6119 -51 391 336 53 45 chr6 29648974 29649349 -152765893 + L1ME LINE L1 548 925 -5145 1196 111 0 0 chr6 29649589 29649742 -152765500 + AluSg/x SINE Alu 142 294 -18 2196 119 0 0 chr6 29649743 29650036 -152765206 + AluSx SINE Alu 3 295 -17 740 137 23 30 chr6 29652076 29652207 -152763035 + AluJo SINE Alu 117 246 -66 265 143 68 7 chr6 29653746 29653893 -152761349 + (TA)n Simple_repeat Simple_repeat 1 156 0 214 114 95 13 chr6 29653907 29654065 -152761177 + (TA)n Simple_repeat Simple_repeat 2 172 0 379 123 103 7 chr6 29654532 29654687 -152760555 + (TA)n Simple_repeat Simple_repeat 2 171 0 344 101 94 28 chr6 29654705 29655024 -152760218 + (TA)n Simple_repeat Simple_repeat 1 340 0 271 337 114 40 chr6 29656398 29656600 -152758642 - MIR SINE MIR -39 223 7 2370 68 0 0 chr6 29657024 29657329 -152757913 + AluY SINE Alu 1 305 0 1966 139 36 7 chr6 29657903 29658204 -152757038 - AluJb SINE Alu -2 310 1 204 229 21 57 chr6 29658431 29658571 -152756671 + A-rich Low_complexity Low_complexity 5 139 0 28 29 0 0 chr6 29660253 29660288 -152754954 + AT_rich Low_complexity Low_complexity 1 35 0 2159 107 0 28 chr6 29660693 29661011 -152754231 - AluSg1 SINE Alu 0 309 1 879 237 88 19 chr6 29661529 29661858 -152753384 + L1ME3A LINE L1 5535 5889 -281 1564 190 11 4 chr6 29661952 29662231 -152753011 + AluJb SINE Alu 14 294 -18 255 133 0 0 chr6 29662231 29662276 -152752966 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 2427 55 16 10 chr6 29662549 29662856 -152752386 + AluY SINE Alu 1 309 -2 1942 120 4 0 chr6 29662962 29663228 -152752014 - AluSx SINE Alu -45 267 1 257 398 19 12 chr6 29663518 29663679 -152751563 + MIR SINE MIR 20 181 -81 782 236 17 11 chr6 29663821 29663999 -152751243 - MLT1C LTR MaLR -102 365 187 2038 136 3 0 chr6 29664035 29664329 -152750913 + AluJb SINE Alu 1 295 -17 2176 111 3 3 chr6 29665836 29666134 -152749108 - AluSx SINE Alu -14 298 1 410 165 51 0 chr6 29666791 29666870 -152748372 + MSTA LTR MaLR 3 85 -343 1279 161 16 80 chr6 29666972 29667283 -152747959 + L1MDa LINE L1 72 362 -6178 224 289 0 0 chr6 29667741 29667793 -152747449 + L2 LINE L2 3262 3313 0 351 273 133 60 chr6 29670133 29670163 -152745079 - L2 LINE L2 0 3313 3287 1535 128 0 4 chr6 29670163 29670390 -152744852 - AluSx SINE Alu -86 226 1 351 273 133 60 chr6 29670390 29670608 -152744634 - L2 LINE L2 -26 3287 3047 1268 99 6 0 chr6 29670721 29670882 -152744360 + AluSx SINE Alu 1 162 -150 241 358 77 23 chr6 29670885 29671071 -152744171 - L2 LINE L2 -491 2823 2622 2145 131 3 0 chr6 29671071 29671377 -152743865 + AluSx SINE Alu 5 311 -1 241 358 77 23 chr6 29671377 29671411 -152743831 - L2 LINE L2 -692 2622 2591 184 397 68 0 chr6 29671423 29671496 -152743746 - MIR SINE MIR -172 90 13 2860 13 0 0 chr6 29673411 29673724 -152741518 + AluYb8 SINE Alu 1 313 -5 185 362 0 0 chr6 29674220 29674278 -152740964 - L2 LINE L2 -208 3064 3007 455 305 82 68 chr6 29674935 29675302 -152739940 - LTR67 LTR ERVL -82 475 104 510 249 5 79 chr6 29675331 29675520 -152739722 + LTR16A LTR ERVL 18 192 -258 278 232 14 0 chr6 29676876 29676945 -152738297 + HERVL18 LTR ERVL 5683 5752 -295 * 454 223 0 0 chr6 29676885 29676979 -152738263 + PABL_B-int LTR ERV1 6579 6672 -450 2655 126 22 2 chr6 29677350 29677764 -152737478 + LTR42 LTR ERVL 41 462 -33 1484 161 4 40 chr6 29678172 29678446 -152736796 - AluJb SINE Alu -48 264 1 1699 163 83 0 chr6 29678481 29678806 -152736436 + MER65A LTR ERV1 47 398 -47 1784 97 0 0 chr6 29678807 29679033 -152736209 - AluSg/x SINE Alu -14 296 71 2983 104 36 20 chr6 29679033 29679531 -152735711 + LTR10A LTR ERV1 1 506 -103 2102 85 3 53 chr6 29679550 29679869 -152735373 - AluY SINE Alu -8 303 1 2964 80 122 11 chr6 29681482 29681942 -152733300 - MER9 LTR ERVK 0 511 1 2993 143 50 4 chr6 29682423 29682946 -152732296 + LTR10A LTR ERV1 1 547 -62 2196 105 0 26 chr6 29683547 29683853 -152731389 + AluSg SINE Alu 1 298 -12 25 31 0 0 chr6 29684394 29684426 -152730816 + AT_rich Low_complexity Low_complexity 1 32 0 208 301 12 48 chr6 29684447 29684530 -152730712 + L2 LINE L2 3193 3272 0 2264 91 37 0 chr6 29685615 29685913 -152729329 + AluY SINE Alu 1 309 -2 224 30 30 0 chr6 29686403 29686436 -152728806 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2230 92 0 0 chr6 29686439 29686720 -152728522 - AluSg SINE Alu -29 281 1 27 0 0 0 chr6 29688692 29688719 -152726523 + AT_rich Low_complexity Low_complexity 1 27 0 540 242 53 0 chr6 29689889 29690021 -152725221 - MIR SINE MIR -106 156 18 266 293 41 16 chr6 29691185 29691308 -152723934 - MER65B LTR ERV1 -403 128 3 1289 180 64 97 chr6 29693268 29693641 -152721601 + MLT1A2 LTR MaLR 1 361 -13 3062 135 14 0 chr6 29694518 29694940 -152720302 + MSTA LTR MaLR 1 428 0 345 333 14 14 chr6 29695358 29695499 -152719743 - MIR SINE MIR -44 218 78 808 221 96 66 chr6 29695621 29696156 -152719086 + LTR48B LTR ERV1 1 542 0 1700 231 38 58 chr6 29696797 29697243 -152717999 + MER45B DNA AcHobo 1 437 -603 2455 65 3 3 chr6 29697250 29697558 -152717684 + AluY SINE Alu 1 308 -3 962 122 86 46 chr6 29697566 29697763 -152717479 + LTR49-int LTR ERV1 2919 3123 -3208 1219 150 37 61 chr6 29697792 29698038 -152717204 + LTR49-int LTR ERV1 3109 3348 -2983 678 191 16 24 chr6 29698085 29698211 -152717031 + LTR49-int LTR ERV1 3353 3477 -2854 429 180 0 0 chr6 29698230 29698291 -152716951 + AluJ/FLAM SINE Alu 7 67 -245 2216 128 6 12 chr6 29698293 29698630 -152716612 + L1P3 LINE L1 786 1120 -4755 833 120 0 24 chr6 29698627 29698752 -152716490 - L1P3 LINE L1 -6306 155 34 * 3469 222 16 44 chr6 29698737 29699709 -152715533 + L1P3 LINE L1 1169 2113 -4348 1818 124 18 0 chr6 29699695 29699969 -152715273 - L1P LINE L1 -3261 2885 2607 * 12030 100 14 5 chr6 29699971 29702414 -152712828 + L1PA8 LINE L1 3705 6159 -13 5476 126 79 69 chr6 29702500 29703696 -152711546 + LTR49-int LTR ERV1 3712 4918 -1413 228 190 51 51 chr6 29704806 29704885 -152710357 - MIR SINE MIR -4 258 180 753 186 52 6 chr6 29704920 29705092 -152710150 + L1MD3 LINE L1 7806 7985 -10 1395 171 57 112 chr6 29705321 29705620 -152709622 + MER110A LTR ERV1 39 306 -162 7006 21 1 0 chr6 29705620 29706375 -152708867 + L1PA3 LINE L1 5396 6151 -4 1395 171 57 112 chr6 29706375 29706530 -152708712 + MER110A LTR ERV1 306 468 0 2370 95 0 7 chr6 29707266 29707572 -152707670 - AluSx SINE Alu -8 304 1 809 297 153 9 chr6 29707717 29708140 -152707102 - L2 LINE L2 0 3272 2782 607 128 0 12 chr6 29708153 29708239 -152707003 + FLAM_A SINE Alu 31 115 -27 344 274 9 53 chr6 29708764 29708877 -152706365 + L2 LINE L2 2967 3074 -198 1930 119 72 44 chr6 29709170 29709530 -152705712 + THE1C LTR MaLR 6 375 0 46 54 0 0 chr6 29710187 29710261 -152704981 + AT_rich Low_complexity Low_complexity 1 74 0 222 256 0 0 chr6 29710382 29710421 -152704821 - MIR SINE MIR -207 55 17 274 338 66 29 chr6 29710527 29710663 -152704579 - MER5B DNA MER1_type -33 145 5 467 282 109 47 chr6 29710781 29711486 -152703756 - L1MEc LINE L1 -770 1806 1008 228 67 0 0 chr6 29712159 29712189 -152703053 + (T)n Simple_repeat Simple_repeat 1 30 0 2314 153 17 42 chr6 29712534 29712938 -152702304 + MSTD LTR MaLR 3 396 0 2021 134 16 0 chr6 29714494 29714801 -152700441 + AluSx SINE Alu 1 312 0 1573 188 3 63 chr6 29715732 29716051 -152699191 + AluJo SINE Alu 1 300 -12 676 256 57 28 chr6 29716544 29716755 -152698487 + Charlie8 DNA MER1_type 2 218 -2199 21 0 0 0 chr6 29717201 29717222 -152698020 + AT_rich Low_complexity Low_complexity 1 21 0 301 261 14 0 chr6 29718182 29718251 -152696991 - MIR SINE MIR 0 262 193 2230 111 0 0 chr6 29718378 29718675 -152696567 + AluSc SINE Alu 1 297 -12 36 40 0 0 chr6 29718735 29718785 -152696457 + AT_rich Low_complexity Low_complexity 1 50 0 490 313 58 26 chr6 29719103 29719416 -152695826 - L1M4 LINE L1 -2839 3307 2985 2366 88 0 3 chr6 29720632 29720928 -152694314 - AluSc SINE Alu -14 295 1 255 219 125 55 chr6 29721117 29721245 -152693997 - L1ME LINE L1 -426 5695 5559 1599 155 115 57 chr6 29721398 29721823 -152693419 - LTR7 LTR ERV1 0 450 1 321 286 41 34 chr6 29721838 29721985 -152693257 - L1ME LINE L1 -808 5338 5191 448 241 0 75 chr6 29722100 29722233 -152693009 + L2 LINE L2 2622 2744 -570 971 182 0 27 chr6 29722233 29722420 -152692822 + FRAM SINE Alu 1 176 0 900 300 101 14 chr6 29722433 29722828 -152692414 + L2 LINE L2 2746 3213 -100 321 26 0 0 chr6 29722828 29722866 -152692376 + (CA)n Simple_repeat Simple_repeat 1 38 0 900 300 101 14 chr6 29722866 29722963 -152692279 + L2 LINE L2 3213 3300 -13 714 279 150 26 chr6 29722990 29723442 -152691800 + L1MC4a LINE L1 5433 5940 -1868 270 333 31 0 chr6 29724188 29724284 -152690958 - MIR SINE MIR 0 262 164 252 0 0 0 chr6 29724392 29724420 -152690822 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 577 279 62 75 chr6 29724978 29725380 -152689862 + L3 LINE CR1 1102 1498 -79 1156 153 190 4 chr6 29725381 29725660 -152689582 - MER33 DNA MER1_type -1 323 1 240 234 31 0 chr6 29725670 29725734 -152689508 + L3 LINE CR1 1509 1574 -3 1742 197 56 19 chr6 29726415 29726791 -152688451 - MLT1B LTR MaLR 0 390 1 799 183 0 0 chr6 29727310 29727455 -152687787 - FLAM_C SINE Alu 0 146 2 282 342 36 27 chr6 29727470 29727581 -152687661 - L2 LINE L2 0 3272 3161 347 259 12 0 chr6 29727832 29727913 -152687329 + MER5A DNA MER1_type 108 189 0 243 250 0 75 chr6 29729445 29729525 -152685717 + MIR SINE MIR 82 155 -107 1197 176 9 27 chr6 29729728 29729950 -152685292 + AluJo SINE Alu 81 298 -14 494 125 164 29 chr6 29730136 29730230 -152685012 - MER3 DNA MER1_type -13 149 38 1563 130 134 4 chr6 29730230 29730492 -152684750 - AluSx SINE Alu -16 296 1 1489 166 20 71 chr6 29730814 29731110 -152684132 - AluJo SINE Alu -31 281 1 1334 146 127 8 chr6 29731644 29731897 -152683345 - MER1B DNA MER1_type -1 338 56 201 254 18 18 chr6 29731931 29731986 -152683256 - L2 LINE L2 -3 3310 3256 206 118 0 0 chr6 29732467 29732501 -152682741 + (A)n Simple_repeat Simple_repeat 1 34 0 1247 108 29 117 chr6 29733250 29733490 -152681752 - MER20 DNA MER1_type 0 219 1 2181 90 23 19 chr6 29733568 29733878 -152681364 + AluSp SINE Alu 1 311 -2 361 183 247 11 chr6 29734158 29734251 -152680991 + MER3 DNA MER1_type 38 152 -57 * 1211 162 141 18 chr6 29734246 29734586 -152680656 + MER3 DNA MER1_type 2232 2613 0 818 319 161 10 chr6 29734616 29735026 -152680216 - L2 LINE L2 -341 2973 2502 321 218 26 0 chr6 29735068 29735146 -152680096 - MER116 DNA Mariner 0 80 1 902 228 44 5 chr6 29735432 29735638 -152679604 + MIR SINE MIR 21 234 -28 488 291 14 30 chr6 29736705 29736894 -152678348 + MIR SINE MIR 21 205 -57 1068 207 126 59 chr6 29737824 29738261 -152676981 - LTR40a LTR ERVL -12 507 1 27 81 0 0 chr6 29738305 29738367 -152676875 + AT_rich Low_complexity Low_complexity 1 62 0 744 181 104 23 chr6 29738662 29738984 -152676258 - L1M4 LINE L1 -704 5474 5128 1975 141 10 0 chr6 29739174 29739473 -152675769 - AluJb SINE Alu -10 302 1 1535 119 82 101 chr6 29739977 29740295 -152674947 + AluJo SINE Alu 1 312 0 559 145 0 0 chr6 29742670 29742753 -152672489 + 7SLRNA srpRNA srpRNA 217 299 -21 24 0 0 0 chr6 29742753 29742777 -152672465 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr6 29742997 29743021 -152672221 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr6 29743030 29743070 -152672172 + AT_rich Low_complexity Low_complexity 1 40 0 2517 47 0 0 chr6 29743952 29744248 -152670994 + AluY SINE Alu 1 296 -15 868 179 80 47 chr6 29744271 29744483 -152670759 - MER20 DNA MER1_type 0 219 1 933 240 67 63 chr6 29744701 29745147 -152670095 - MLT1C LTR MaLR -14 453 6 2731 209 144 25 chr6 29745632 29746784 -152668458 + L1ME LINE L1 4472 5770 -396 297 173 0 0 chr6 29746799 29746851 -152668391 - L1ME1 LINE L1 -232 5934 5883 197 363 89 17 chr6 29747167 29747346 -152667896 - L2 LINE L2 -2054 1260 1069 315 361 69 0 chr6 29748189 29748333 -152666909 - MIR SINE MIR -74 188 35 21 57 0 0 chr6 29748984 29749019 -152666223 + AT_rich Low_complexity Low_complexity 1 35 0 634 37 0 0 chr6 29749019 29749101 -152666141 - L1PA2 LINE L1 0 6155 6074 2595 200 92 56 chr6 29749159 29749976 -152665266 - L1MC4 LINE L1 -180 7862 7003 2115 137 3 0 chr6 29749976 29750282 -152664960 - AluSx SINE Alu -5 307 1 2595 200 92 56 chr6 29750282 29750426 -152664816 - L1MC4 LINE L1 -1039 7003 6866 292 159 48 0 chr6 29754503 29754566 -152660676 - MARNA DNA Mariner -23 563 498 256 158 0 0 chr6 29755438 29755476 -152659766 - 5S rRNA rRNA -83 38 1 731 232 168 5 chr6 29756122 29756195 -152659047 - MIR SINE MIR 0 262 202 2590 71 22 25 chr6 29756195 29756560 -152658682 - THE1B LTR MaLR 0 364 1 731 232 168 5 chr6 29756560 29756706 -152658536 - MIR SINE MIR -60 202 7 457 291 61 102 chr6 29758125 29758634 -152656608 + L2 LINE L2 2817 3304 -9 772 144 21 93 chr6 29758955 29759098 -152656144 + MER20 DNA MER1_type 36 163 -56 180 111 0 0 chr6 29759098 29759125 -152656117 + (CCCCCG)n Simple_repeat Simple_repeat 3 29 0 772 144 21 93 chr6 29759125 29759175 -152656067 + MER20 DNA MER1_type 163 215 -4 1233 163 143 43 chr6 29759854 29760112 -152655130 + AluJo SINE Alu 3 286 -26 492 181 254 0 chr6 29762133 29762271 -152652971 + MIR SINE MIR 69 241 -21 2400 72 0 0 chr6 29762925 29763216 -152652026 - AluSg SINE Alu -19 291 1 314 301 75 26 chr6 29763231 29763497 -152651745 - L1M4 LINE L1 -1066 5080 4802 188 360 170 7 chr6 29763730 29763883 -152651359 + MIR SINE MIR 35 212 -50 304 311 30 15 chr6 29764179 29764314 -152650928 + CT-rich Low_complexity Low_complexity 1 137 0 738 135 92 0 chr6 29764586 29764727 -152650515 - L1MC3 LINE L1 -363 7422 7269 22 35 0 0 chr6 29765222 29765251 -152649991 + AT_rich Low_complexity Low_complexity 1 29 0 1005 181 0 0 chr6 29765293 29765453 -152649789 - AluJb SINE Alu -5 307 148 191 282 154 0 chr6 29767383 29767461 -152647781 - L2 LINE L2 -932 2382 2293 1672 202 7 0 chr6 29767556 29767863 -152647379 - AluJo SINE Alu -3 309 1 631 199 76 6 chr6 29769351 29769522 -152645720 + LTR40c LTR ERVL 5 187 -278 2225 252 89 24 chr6 29769574 29770136 -152645106 - L1M4 LINE L1 -860 5286 4762 2454 226 79 12 chr6 29770136 29770781 -152644461 + MER76 LTR ERV 1 688 0 2225 252 89 24 chr6 29770781 29771350 -152643892 - L1M4 LINE L1 -1384 4762 4081 302 301 0 0 chr6 29771563 29771636 -152643606 - MER2 DNA MER2_type -1 344 272 201 74 0 0 chr6 29771647 29771674 -152643568 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 964 149 96 5 chr6 29771914 29772102 -152643140 - MER2 DNA MER2_type -139 206 2 559 267 0 14 chr6 29772107 29772253 -152642989 + MER82 DNA MER2_type 1 144 -509 731 169 23 0 chr6 29772338 29772468 -152642774 + FLAM_C SINE Alu 1 133 0 1399 82 0 0 chr6 29772691 29772862 -152642380 - AluSp SINE Alu -7 306 136 1278 178 55 4 chr6 29772968 29773243 -152641999 + MER82 DNA MER2_type 202 490 -163 1198 202 184 28 chr6 29773251 29773687 -152641555 - MLT1D LTR MaLR -1 504 1 335 284 63 0 chr6 29773988 29774115 -152641127 - L1ME3A LINE L1 -9 6161 6027 369 199 154 7 chr6 29774134 29774270 -152640972 - L1ME3A LINE L1 -203 5967 5812 1741 201 0 0 chr6 29774913 29775221 -152640021 - AluSx SINE Alu -4 308 1 252 0 0 0 chr6 29776000 29776028 -152639214 + (A)n Simple_repeat Simple_repeat 1 28 0 307 333 0 0 chr6 29776543 29776624 -152638618 + L2 LINE L2 3186 3266 -6 289 276 26 60 chr6 29776611 29776727 -152638515 + L3 LINE CR1 532 643 -934 * 302 293 77 58 chr6 29776922 29777130 -152638112 - L1ME3A LINE L1 -350 5820 5609 895 227 153 109 chr6 29777473 29777609 -152637633 - L2 LINE L2 -341 2973 2844 2179 132 7 0 chr6 29777609 29777919 -152637323 + AluSx SINE Alu 1 312 0 895 227 153 109 chr6 29777919 29778279 -152636963 - L2 LINE L2 -470 2844 2455 1628 164 14 38 chr6 29778283 29778576 -152636666 + AluJb SINE Alu 1 286 -26 235 201 90 118 chr6 29778609 29778753 -152636489 - L2 LINE L2 -855 2459 2320 1748 141 29 58 chr6 29778951 29779263 -152635979 - AluJb SINE Alu -9 303 1 2074 73 62 4 chr6 29780291 29780565 -152634677 + AluSc SINE Alu 1 290 -19 444 260 125 45 chr6 29780661 29781006 -152634236 + L1MEd LINE L1 955 1370 -4759 1908 152 31 0 chr6 29781006 29781295 -152633947 - AluJb SINE Alu -13 299 2 444 260 125 45 chr6 29781295 29781492 -152633750 + L1MEd LINE L1 1370 1550 -4579 443 246 8 39 chr6 29781524 29781639 -152633603 + L1MEc LINE L1 729 841 -5766 1442 226 56 86 chr6 29781639 29782160 -152633082 - MLT1D LTR MaLR 0 505 1 443 246 8 39 chr6 29782160 29782174 -152633068 + L1MEc LINE L1 841 854 -5753 868 174 0 128 chr6 29782196 29782242 -152633000 - MLT1A2 LTR MaLR -160 214 164 2636 58 0 0 chr6 29782242 29782553 -152632689 + AluY SINE Alu 1 311 0 868 174 0 128 chr6 29782553 29782748 -152632494 - MLT1A2 LTR MaLR -210 164 4 1782 169 248 6 chr6 29782752 29783272 -152631970 + L1MEc LINE L1 1249 1894 -4532 952 79 39 0 chr6 29783273 29783400 -152631842 + AluSp SINE Alu 1 132 -181 2255 95 7 0 chr6 29783403 29783708 -152631534 + AluY SINE Alu 2 308 -3 342 313 18 49 chr6 29783715 29783878 -152631364 - L1ME4a LINE L1 -95 6026 5869 254 262 105 38 chr6 29784001 29784211 -152631031 - L1MC5 LINE L1 -427 7534 7311 938 268 51 65 chr6 29784278 29785107 -152630135 - L1MC4 LINE L1 -672 7370 6536 783 309 148 31 chr6 29785437 29786235 -152629007 - L1MEc LINE L1 -3176 2970 2114 185 247 0 32 chr6 29786242 29786335 -152628907 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 1534 235 108 16 chr6 29786421 29786864 -152628378 - MLT1E LTR MaLR 0 593 110 2236 171 87 42 chr6 29789375 29789817 -152625425 + MER63 DNA MER1_type 475 952 -109 962 149 40 7 chr6 29789819 29789967 -152625275 + AluJo/FRAM SINE Alu 137 289 -13 2236 171 87 42 chr6 29789967 29790082 -152625160 + MER63 DNA MER1_type 952 1060 -1 311 196 26 13 chr6 29790084 29790163 -152625079 - L1MC4 LINE L1 -330 5836 5759 * 2003 181 25 0 chr6 29790148 29790513 -152624729 - L1MD1 LINE L1 -273 6363 5990 194 0 39 0 chr6 29790513 29790539 -152624703 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1902 121 15 0 chr6 29790544 29790808 -152624434 - AluSx SINE Alu -44 268 1 1319 49 6 0 chr6 29790844 29791006 -152624236 + AluY SINE Alu 147 309 -2 1241 199 107 28 chr6 29791012 29791548 -152623694 - L1MD1 LINE L1 -650 5986 5417 954 198 0 17 chr6 29791557 29791729 -152623513 - AluJb SINE Alu -2 310 142 645 174 17 26 chr6 29791741 29791856 -152623386 - AluJo SINE Alu -101 211 98 1534 144 98 0 chr6 29791929 29792193 -152623049 + AluJo SINE Alu 1 290 -22 3242 206 64 50 chr6 29792208 29792319 -152622923 - L1MD1 LINE L1 -2661 3879 3771 1607 169 14 20 chr6 29792319 29792615 -152622627 + AluJo SINE Alu 3 296 -16 3242 206 64 50 chr6 29792615 29793644 -152621598 - L1MD1 LINE L1 -2769 3771 2757 2237 110 0 0 chr6 29793644 29793934 -152621308 - AluSx SINE Alu -22 290 1 2173 127 0 0 chr6 29793942 29794233 -152621009 - AluSx SINE Alu -21 291 1 3242 206 64 50 chr6 29794233 29794681 -152620561 - L1MD1 LINE L1 -3789 2751 2310 1386 182 93 4 chr6 29794681 29794852 -152620390 - AluJo SINE Alu -7 305 98 198 0 0 0 chr6 29794852 29794874 -152620368 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1386 182 93 4 chr6 29794874 29794982 -152620260 - AluJo SINE Alu -214 98 1 3242 206 64 50 chr6 29794982 29796911 -152618331 - L1MD1 LINE L1 -4230 2310 1 272 167 14 56 chr6 29797933 29798005 -152617237 + L2 LINE L2 2430 2498 -816 550 228 32 57 chr6 29798072 29798230 -152617012 - L2 LINE L2 -1 3312 3159 2635 127 30 48 chr6 29798322 29798756 -152616486 - MSTB LTR MaLR 0 426 1 254 250 136 80 chr6 29798764 29798940 -152616302 - MLT1J LTR MaLR -101 410 225 27 0 0 0 chr6 29798964 29798991 -152616251 + AT_rich Low_complexity Low_complexity 1 27 0 628 163 0 0 chr6 29798991 29799083 -152616159 - Tigger7 DNA MER2_type 0 2491 2400 * 3141 175 23 2 chr6 29799077 29799591 -152615651 - Tigger7 DNA MER2_type -1961 526 2 3900 161 14 3 chr6 29799594 29800252 -152614990 - L1MB2 LINE L1 -22 6149 5485 609 58 0 0 chr6 29800285 29800371 -152614871 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 180 111 0 0 chr6 29800527 29800554 -152614688 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3745 226 21 16 chr6 29801851 29802210 -152613032 - MER21B LTR ERV1 -21 842 486 503 0 0 31 chr6 29802210 29802274 -152612968 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 3745 226 21 16 chr6 29802274 29802683 -152612559 - MER21B LTR ERV1 -377 486 70 432 253 11 0 chr6 29802719 29802806 -152612436 - MER21B LTR ERV1 -757 106 19 1863 234 48 23 chr6 29802815 29803502 -152611740 + L1MEc LINE L1 1372 2082 -4314 1949 87 0 20 chr6 29803502 29803756 -152611486 + AluSc SINE Alu 54 302 -7 1863 234 48 23 chr6 29803756 29803826 -152611416 + L1MEc LINE L1 2082 2149 -4247 5264 147 53 17 chr6 29803834 29804709 -152610533 + L1MC1 LINE L1 5422 6327 -6 246 156 0 0 chr6 29804828 29804873 -152610369 + (CA)n Simple_repeat Simple_repeat 2 46 0 271 287 43 9 chr6 29807243 29807435 -152607807 + MIR SINE MIR 3 262 0 260 283 65 7 chr6 29807945 29808083 -152607159 - L1MC5 LINE L1 -51 7910 7765 184 385 44 7 chr6 29809108 29809243 -152605999 + L2 LINE L2 2337 2476 -838 606 200 9 9 chr6 29809243 29809353 -152605889 + MER81 DNA DNA 5 114 0 509 335 37 0 chr6 29809381 29809569 -152605673 + L2 LINE L2 2521 2715 -599 197 241 145 0 chr6 29809773 29809856 -152605386 + L2 LINE L2 1906 2000 -1314 2143 116 3 0 chr6 29810395 29810688 -152604554 + AluSx SINE Alu 1 294 -18 213 65 0 0 chr6 29811024 29811055 -152604187 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1769 135 10 17 chr6 29811058 29811347 -152603895 - AluJb SINE Alu -25 287 1 776 12 0 0 chr6 29812213 29812295 -152602947 + tRNA-Ser-AGC tRNA tRNA 1 82 -3 284 202 64 92 chr6 29813163 29813272 -152601970 + L1MC4a LINE L1 5854 5959 -1849 261 282 94 8 chr6 29813320 29813437 -152601805 - L1MC/D LINE L1 -516 5648 5522 2081 129 0 3 chr6 29813798 29814121 -152601121 + AluSx SINE Alu 1 312 0 509 200 357 7 chr6 29814152 29814292 -152600950 + MER5A DNA MER1_type 1 189 0 503 219 92 0 chr6 29814813 29814932 -152600310 - LTR65 LTR ERV1 -506 163 34 183 42 0 0 chr6 29814951 29814975 -152600267 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 365 191 0 0 chr6 29815120 29815188 -152600054 - MER53 DNA DNA 0 189 122 351 0 0 0 chr6 29816041 29816080 -152599162 + (CA)n Simple_repeat Simple_repeat 1 39 0 202 172 0 35 chr6 29816722 29816780 -152598462 + T-rich Low_complexity Low_complexity 5 60 0 509 268 155 36 chr6 29818300 29818494 -152596748 + L1MC/D LINE L1 5600 5816 -1992 1688 156 0 66 chr6 29818627 29818947 -152596295 + AluSx SINE Alu 1 299 -13 966 223 93 40 chr6 29819079 29819379 -152595863 + MER46C DNA MER2_type 1 316 -22 5401 138 32 22 chr6 29819397 29820301 -152594941 - MER49 LTR ERV1 -8 915 3 582 262 97 0 chr6 29820313 29820550 -152594692 - L1MC5 LINE L1 -83 7878 7619 24 0 0 0 chr6 29820608 29820632 -152594610 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr6 29820738 29820765 -152594477 + (A)n Simple_repeat Simple_repeat 1 27 0 551 322 34 0 chr6 29820832 29821037 -152594205 - HERVL LTR ERVL -1236 4418 4207 789 250 16 21 chr6 29821169 29821357 -152593885 - LTR39 LTR ERV1 0 783 597 1292 149 12 132 chr6 29821433 29821613 -152593629 - LTR39 LTR ERV1 -482 301 180 2982 6 0 0 chr6 29821613 29821931 -152593311 - AluYb8 SINE Alu 0 318 1 1292 149 12 132 chr6 29821931 29822092 -152593150 - LTR39 LTR ERV1 -603 180 1 460 202 65 65 chr6 29822095 29822263 -152592979 - HERVL LTR ERVL -1674 4090 3923 684 122 37 18 chr6 29822263 29822427 -152592815 + CT-rich Low_complexity Low_complexity 2 168 0 1446 117 57 45 chr6 29823401 29823665 -152591577 + AluJo SINE Alu 1 267 -45 338 202 0 11 chr6 29823760 29823849 -152591393 + GA-rich Low_complexity Low_complexity 3 90 0 237 298 58 94 chr6 29824975 29825166 -152590076 - MER5A DNA MER1_type 0 189 6 343 200 60 20 chr6 29825258 29825358 -152589884 + MIR SINE MIR 86 189 -73 338 272 49 103 chr6 29825691 29825827 -152589415 - MIR SINE MIR -79 183 58 875 213 24 12 chr6 29825827 29825991 -152589251 + FRAM SINE Alu 1 166 0 338 272 49 103 chr6 29825991 29826038 -152589204 - MIR SINE MIR -204 58 10 21 0 0 0 chr6 29826159 29826180 -152589062 + AT_rich Low_complexity Low_complexity 1 21 0 587 275 39 64 chr6 29827271 29827420 -152587822 + MIR SINE MIR 8 150 -112 1615 190 62 32 chr6 29827420 29827794 -152587448 - MLT1B LTR MaLR -4 386 2 587 275 39 64 chr6 29827794 29827877 -152587365 + MIR SINE MIR 150 234 -28 220 147 0 0 chr6 29828625 29828659 -152586583 - L2 LINE L2 -6 3307 3274 269 294 27 41 chr6 29828875 29829021 -152586221 - L1ME4a LINE L1 -43 6078 5935 2541 66 0 0 chr6 29829031 29829333 -152585909 - AluY SINE Alu -9 302 1 751 306 61 48 chr6 29829791 29830167 -152585075 - L2 LINE L2 -34 3279 2899 3481 146 11 30 chr6 29830186 29830642 -152584600 - MER44D DNA MER2_type -1883 604 105 1950 99 81 32 chr6 29830642 29830925 -152584317 + AluSg SINE Alu 2 298 -12 3481 146 11 30 chr6 29830925 29831028 -152584214 - MER44D DNA MER2_type -2382 105 1 2058 137 3 0 chr6 29831226 29831525 -152583717 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr6 29832574 29832599 -152582643 + AT_rich Low_complexity Low_complexity 1 25 0 276 288 18 45 chr6 29832873 29832984 -152582258 - MIR SINE MIR -66 196 89 473 204 62 0 chr6 29833003 29833116 -152582126 - L1MD3 LINE L1 -1 7994 7875 1499 168 45 17 chr6 29833423 29833714 -152581528 + AluJo SINE Alu 2 300 -12 3245 71 2 7 chr6 29834212 29834632 -152580610 - MER4E LTR ERV1 0 766 349 1064 214 106 101 chr6 29835137 29835581 -152579661 - LTR16A1 LTR ERVL -3 454 9 2257 149 87 21 chr6 29835681 29836173 -152579069 - Tigger3(Golem) DNA MER2_type -16 3013 94 725 313 94 3 chr6 29836663 29837005 -152578237 - L1M4 LINE L1 -1920 4226 3854 1775 123 115 7 chr6 29837095 29837364 -152577878 - AluSg1 SINE Alu -11 298 1 277 301 131 35 chr6 29837364 29837646 -152577596 - L1M4 LINE L1 -3569 2577 2269 2889 147 19 2 chr6 29837735 29838156 -152577086 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr6 29838203 29838224 -152577018 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr6 29838370 29838401 -152576841 + AT_rich Low_complexity Low_complexity 1 31 0 205 178 0 44 chr6 29838835 29838880 -152576362 + (TTA)n Simple_repeat Simple_repeat 1 43 0 500 45 0 15 chr6 29839148 29839214 -152576028 - L1PA15 LINE L1 -4 6161 6097 988 259 66 54 chr6 29839273 29839590 -152575652 - L2 LINE L2 -473 2841 2521 244 289 144 10 chr6 29839634 29839731 -152575511 + L2 LINE L2 3160 3269 -3 207 0 0 0 chr6 29841933 29841956 -152573286 + (CA)n Simple_repeat Simple_repeat 2 24 0 2174 136 0 0 chr6 29842831 29843141 -152572101 - AluSx SINE Alu -2 310 1 355 321 67 21 chr6 29845613 29845806 -152569436 + MIR3 SINE MIR 3 204 -4 250 191 21 0 chr6 29845879 29845926 -152569316 - L2 LINE L2 -16 3256 3209 1692 174 13 7 chr6 29847723 29848033 -152567209 + AluSx SINE Alu 1 312 0 579 238 101 5 chr6 29848428 29848617 -152566625 + L2 LINE L2 3106 3312 -1 248 241 92 11 chr6 29849066 29849153 -152566089 - MIR SINE MIR -21 241 148 2446 79 0 3 chr6 29849240 29849545 -152565697 - AluSp SINE Alu -9 304 1 433 242 20 0 chr6 29849560 29849659 -152565583 - MIR SINE MIR -155 107 7 381 256 23 23 chr6 29849735 29849868 -152565374 + MIR SINE MIR 124 256 -6 221 315 72 9 chr6 29849934 29850045 -152565197 - MIR SINE MIR -59 149 32 1879 224 75 13 chr6 29850169 29850647 -152564595 + Charlie4a DNA MER1_type 1 508 0 465 184 98 110 chr6 29852161 29852324 -152562918 + MIR SINE MIR 78 238 -24 577 197 33 25 chr6 29852749 29852871 -152562371 + MER5B DNA MER1_type 2 124 -54 1036 150 0 6 chr6 29852874 29853041 -152562201 - AluSx SINE Alu -5 307 142 689 105 0 0 chr6 29853041 29853127 -152562115 - AluSx SINE Alu -225 87 2 203 250 0 0 chr6 29853128 29853168 -152562074 + MER5B DNA MER1_type 132 171 -7 253 235 59 0 chr6 29853172 29853240 -152562002 + L1MC5 LINE L1 7372 7443 -518 3038 170 6 8 chr6 29853241 29853728 -152561514 - MER66B LTR ERV1 0 486 1 3821 119 17 0 chr6 29853728 29854265 -152560977 - MER66B-int LTR ERV1 0 6676 6131 2587 174 28 2 chr6 29854272 29854702 -152560540 - MER66-int LTR ERV1 -3892 2784 2344 2259 195 46 2 chr6 29854707 29855117 -152560125 - MER66-int LTR ERV1 -4514 2162 1735 344 240 39 10 chr6 29855121 29855225 -152560017 + L1MC4 LINE L1 7790 7896 -146 1581 184 3 32 chr6 29855316 29855632 -152559610 + AluJb SINE Alu 1 307 -5 1242 215 24 0 chr6 29855956 29856202 -152559040 + MER58 DNA MER1_type 1 252 -89 674 109 12 260 chr6 29856200 29856361 -152558881 + MER58 DNA MER1_type 2166 2201 -219 * 2787 84 21 8 chr6 29856361 29856740 -152558502 + L1PA8 LINE L1 5785 6168 -4 674 109 12 260 chr6 29856740 29856916 -152558326 + MER58 DNA MER1_type 2201 2419 -1 1605 155 52 17 chr6 29857672 29857962 -152557280 + AluJb SINE Alu 1 300 -12 219 189 0 0 chr6 29859223 29859276 -152555966 + GA-rich Low_complexity Low_complexity 2 54 0 269 379 17 0 chr6 29860438 29860554 -152554688 - MLT1K LTR MaLR -292 296 179 630 202 37 0 chr6 29860889 29860998 -152554244 + FLAM_C SINE Alu 3 115 -28 432 0 0 0 chr6 29860998 29861046 -152554196 + (CA)n Simple_repeat Simple_repeat 1 48 0 1834 137 24 27 chr6 29861048 29861457 -152553785 - LTR46 LTR ERV1 0 460 1 443 295 40 0 chr6 29861926 29862075 -152553167 - L1MC4a LINE L1 -1886 5922 5768 463 274 145 36 chr6 29862260 29862508 -152552734 - L2 LINE L2 -22 3291 3017 486 237 78 61 chr6 29862566 29862811 -152552431 - L1MC4a LINE L1 -2297 5511 5263 359 313 39 62 chr6 29863769 29864025 -152551217 - L1MC4a LINE L1 -2071 4075 3826 4329 129 19 3 chr6 29865071 29865705 -152549537 - L1PA15 LINE L1 0 6165 5522 245 29 29 0 chr6 29866130 29866164 -152549078 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1377 244 82 48 chr6 29866605 29867224 -152548018 - L2 LINE L2 -238 3075 2439 509 269 19 13 chr6 29867260 29867416 -152547826 + MIR SINE MIR 78 234 -28 270 333 0 24 chr6 29867424 29867550 -152547692 - L2 LINE L2 -253 3019 2897 291 346 182 21 chr6 29867579 29867908 -152547334 - L2 LINE L2 -515 2799 2418 2143 131 0 0 chr6 29868007 29868305 -152546937 + AluSx SINE Alu 1 298 -14 361 258 37 6 chr6 29868368 29868531 -152546711 + (TA)n Simple_repeat Simple_repeat 2 169 0 1997 193 12 80 chr6 29868582 29869095 -152546147 - MLT2B1 LTR ERVL -42 478 1 1504 85 0 5 chr6 29869131 29869320 -152545922 - AluSg/x SINE Alu -23 287 100 389 278 106 13 chr6 29869671 29869822 -152545420 - L2 LINE L2 -954 2360 2196 259 318 132 31 chr6 29869816 29870074 -152545168 + L2 LINE L2 1703 1986 -1328 * 608 213 121 0 chr6 29870125 29870299 -152544943 - MIR SINE MIR -65 197 3 1182 165 263 4 chr6 29870523 29870805 -152544437 - AluJo SINE Alu 0 343 1 338 171 102 0 chr6 29870809 29870897 -152544345 - L1MC4 LINE L1 -851 7191 7095 605 213 0 29 chr6 29872075 29872211 -152543031 - L1ME1 LINE L1 -5 6161 6030 653 155 31 0 chr6 29872318 29872415 -152542827 + FRAM SINE Alu 30 129 -47 2197 121 0 3 chr6 29872436 29872742 -152542500 + AluSg1 SINE Alu 1 305 -4 1606 186 7 10 chr6 29872888 29873195 -152542047 - AluJo SINE Alu -6 306 1 244 218 0 18 chr6 29873373 29873428 -152541814 + L2 LINE L2 3217 3270 -2 1736 149 4 11 chr6 29873655 29873924 -152541318 + AluJo SINE Alu 23 289 -23 305 324 82 46 chr6 29874590 29874809 -152540433 - L2 LINE L2 -3 3269 3043 252 333 62 23 chr6 29874842 29874971 -152540271 - MIR3 SINE MIR -43 165 32 322 159 48 0 chr6 29876463 29876526 -152538716 + MER103 DNA DNA 25 90 -76 238 276 132 0 chr6 29877022 29877098 -152538144 + L2 LINE L2 3182 3267 -5 736 298 27 13 chr6 29877455 29877754 -152537488 - L1ME LINE L1 -361 5760 5458 3312 118 52 3 chr6 29877760 29877773 -152537469 + L1MC/D LINE L1 5221 5232 -1101 3404 117 48 27 chr6 29877773 29878165 -152537077 - L1MC1 LINE L1 0 6333 5950 1937 133 78 35 chr6 29878165 29878311 -152536931 + MER46B DNA MER2_type 1 47 -2684 2211 117 0 0 chr6 29878311 29878602 -152536640 + AluSx SINE Alu 1 291 -21 1937 133 78 35 chr6 29878602 29878801 -152536441 + MER46B DNA MER2_type 47 236 0 3404 117 48 27 chr6 29878801 29878901 -152536341 - L1MC1 LINE L1 -383 5950 5826 2021 148 0 6 chr6 29878901 29879212 -152536030 - AluSx SINE Alu -3 309 1 3404 117 48 27 chr6 29879212 29879265 -152535977 - L1MC1 LINE L1 -507 5826 5776 3312 118 52 3 chr6 29879265 29879783 -152535459 + L1MC1 LINE L1 5232 5774 -559 564 251 193 20 chr6 29879946 29880241 -152535001 + L1MC4a LINE L1 5571 5916 -1892 238 224 17 17 chr6 29880265 29880323 -152534919 - L2 LINE L2 0 3313 3256 181 354 162 10 chr6 29881413 29881512 -152533730 + L2 LINE L2 3153 3266 -6 268 319 126 12 chr6 29881826 29882080 -152533162 - L2 LINE L2 -882 2432 2150 636 259 138 34 chr6 29882103 29882558 -152532684 - MLT1H LTR MaLR -4 545 1 2700 186 74 93 chr6 29883453 29883715 -152531527 - L1MC4 LINE L1 -1 8041 7776 1629 132 0 53 chr6 29883715 29883996 -152531246 - AluJo SINE Alu -46 266 1 2700 186 74 93 chr6 29883996 29884575 -152530667 - L1MC4 LINE L1 -266 7776 7216 319 230 14 0 chr6 29884618 29884692 -152530550 + L2 LINE L2 3220 3294 -19 1090 120 86 14 chr6 29884961 29885170 -152530072 - L1MA9 LINE L1 -80 6232 6009 197 219 24 0 chr6 29885495 29885536 -152529706 + MIR SINE MIR 66 107 -155 575 216 137 46 chr6 29886967 29887208 -152528034 - MER20B DNA MER1_type -3 780 518 471 200 22 0 chr6 29887374 29887464 -152527778 + MLT1C LTR MaLR 1 92 -375 921 188 56 47 chr6 29887464 29887698 -152527544 - MSTB2 LTR MaLR 0 457 222 881 135 0 23 chr6 29887749 29887882 -152527360 + AluJo/FLAM SINE Alu 1 130 -172 2087 99 19 22 chr6 29887884 29888197 -152527045 + AluSq SINE Alu 1 312 -1 2402 220 38 0 chr6 29888207 29888790 -152526452 + L1M1 LINE L1 2571 3175 -4390 733 182 0 0 chr6 29888795 29888905 -152526337 + AluJb SINE Alu 3 112 -200 9962 193 30 23 chr6 29888947 29889270 -152525972 + L1M1 LINE L1 3148 3468 -4097 1715 179 3 3 chr6 29889270 29889571 -152525671 - AluJb SINE Alu -11 301 1 9962 193 30 23 chr6 29889571 29891598 -152523644 + L1M1 LINE L1 3468 5848 -1717 34 24 0 0 chr6 29891598 29891639 -152523603 + AT_rich Low_complexity Low_complexity 1 41 0 9962 193 30 23 chr6 29891639 29891869 -152523373 + L1M1 LINE L1 5848 6075 -1490 1048 227 10 76 chr6 29891967 29892109 -152523133 + MLT1C LTR MaLR 196 311 -156 2379 91 7 0 chr6 29892109 29892416 -152522826 - AluSc SINE Alu 0 309 1 1048 227 10 76 chr6 29892416 29892564 -152522678 + MLT1C LTR MaLR 311 467 0 15731 118 35 24 chr6 29892620 29895011 -152520231 + Tigger1 DNA MER2_type 1 2417 -1 659 238 48 69 chr6 29895703 29895892 -152519350 - MER20B DNA MER1_type -572 211 27 1414 161 96 0 chr6 29896543 29896792 -152518450 - AluJo SINE Alu -3 309 37 261 0 0 0 chr6 29896992 29897021 -152518221 + (T)n Simple_repeat Simple_repeat 1 29 0 1371 130 97 5 chr6 29897568 29897784 -152517458 + MER46A DNA MER2_type 1 236 0 263 320 150 0 chr6 29898367 29898514 -152516728 - MLT1L LTR MaLR -25 590 422 2387 100 0 0 chr6 29898900 29899201 -152516041 + AluSg SINE Alu 5 305 -5 2200 103 10 0 chr6 29901741 29902031 -152513211 - AluSc SINE Alu -16 293 1 431 237 86 69 chr6 29903627 29903872 -152511370 + MLT1J LTR MaLR 261 509 -2 272 231 179 0 chr6 29904026 29904104 -152511138 - MIR SINE MIR -108 154 63 15421 156 34 25 chr6 29904983 29911457 -152503785 - L1PB1 LINE L1 0 6867 1 243 0 0 0 chr6 29911670 29911697 -152503545 + (TG)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr6 29912012 29912035 -152503207 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr6 29912645 29912668 -152502574 + (TTG)n Simple_repeat Simple_repeat 2 24 0 265 68 0 0 chr6 29912836 29912924 -152502318 + Alu SINE Alu 257 344 0 262 203 31 0 chr6 29915402 29915466 -152499776 + (TA)n Simple_repeat Simple_repeat 1 66 0 506 279 74 67 chr6 29915472 29915787 -152499455 + L1ME LINE L1 5255 5571 -599 307 282 0 0 chr6 29915894 29915972 -152499270 + MLT1E LTR MaLR 1 78 -515 243 0 0 0 chr6 29916269 29916296 -152498946 + (CA)n Simple_repeat Simple_repeat 2 28 0 2387 85 0 0 chr6 29917274 29917567 -152497675 + AluSc SINE Alu 1 293 -16 2278 91 0 0 chr6 29917945 29918230 -152497012 + AluSc SINE Alu 1 285 -24 2178 127 7 0 chr6 29919073 29919381 -152495861 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr6 29919396 29919430 -152495812 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 390 136 11 23 chr6 29919430 29919518 -152495724 + GA-rich Low_complexity Low_complexity 4 90 0 1755 234 97 28 chr6 29919882 29920347 -152494895 + MLT1E LTR MaLR 97 593 0 1721 181 68 64 chr6 29920441 29920926 -152494316 + L1MC5 LINE L1 6633 7119 -842 815 226 70 5 chr6 29920973 29921159 -152494083 + MIR SINE MIR 65 262 0 267 204 0 19 chr6 29921703 29921757 -152493485 - MIR SINE MIR -89 119 67 250 304 70 47 chr6 29922004 29922175 -152493067 + MIR SINE MIR 12 186 -76 940 244 76 60 chr6 29922218 29922587 -152492655 + L2 LINE L2 2933 3307 -6 407 268 143 42 chr6 29923576 29923744 -152491498 + MER5A DNA MER1_type 4 188 -1 530 268 174 14 chr6 29924092 29924305 -152490937 - MIR SINE MIR 0 262 16 915 256 14 5 chr6 29926294 29926513 -152488729 - MIR SINE MIR -37 225 5 1462 215 19 48 chr6 29926911 29927030 -152488212 + MLT1F1 LTR MaLR 53 174 -368 9476 54 1 1 chr6 29927030 29928101 -152487141 - MER11C LTR ERVK 0 1071 1 1462 215 19 48 chr6 29928101 29928392 -152486850 + MLT1F1 LTR MaLR 174 542 0 339 257 188 93 chr6 29929123 29929606 -152485636 + MLT1H LTR MaLR 21 549 0 1327 106 6 0 chr6 29929669 29929848 -152485394 + MER46A DNA MER2_type 57 236 0 308 282 0 13 chr6 29931134 29931212 -152484030 + L2 LINE L2 3237 3313 0 341 274 53 0 chr6 29931673 29931768 -152483474 + MIR SINE MIR 152 251 -11 672 304 118 38 chr6 29932482 29933124 -152482118 - L2 LINE L2 -2 3311 2637 244 281 110 61 chr6 29933737 29934082 -152481160 + L1MC5 LINE L1 7363 7724 -237 4573 144 24 34 chr6 29934295 29935091 -152480151 + LTR25 LTR ERV1 1 788 -6 511 335 67 0 chr6 29936510 29936689 -152478553 - L2 LINE L2 -571 2743 2553 246 366 89 0 chr6 29936733 29936856 -152478386 - L2 LINE L2 0 3313 3180 407 189 9 66 chr6 29936871 29936954 -152478288 - MER69 DNA AcHobo -31 2495 2418 1488 185 61 14 chr6 29936954 29937270 -152477972 + AluJo SINE Alu 1 312 0 407 189 9 66 chr6 29937270 29937292 -152477950 - MER69 DNA AcHobo -108 2418 2396 1602 183 56 0 chr6 29937292 29937576 -152477666 + AluSx SINE Alu 1 300 -12 744 201 49 42 chr6 29937661 29937805 -152477437 - FRAM SINE Alu -33 143 1 1916 192 76 25 chr6 29937806 29938492 -152476750 - MER69 DNA AcHobo -142 2384 1575 1911 118 33 0 chr6 29938492 29938763 -152476479 - AluSx SINE Alu -32 280 1 1916 192 76 25 chr6 29938763 29938888 -152476354 - MER69 DNA AcHobo -951 1575 1458 605 249 51 55 chr6 29938900 29939117 -152476125 - MER69 DNA AcHobo -960 266 51 355 252 71 47 chr6 29939137 29939264 -152475978 - MER69 DNA AcHobo -1096 130 1 311 194 0 0 chr6 29939319 29939381 -152475861 - L1MEc LINE L1 -4341 2266 2205 627 239 37 113 chr6 29939411 29939466 -152475776 - L1MEc LINE L1 -4393 2214 2156 2507 109 33 14 chr6 29939466 29939834 -152475408 + THE1C LTR MaLR 1 375 0 627 239 37 113 chr6 29939834 29940227 -152475015 - L1MEc LINE L1 -4451 2156 1704 868 335 65 29 chr6 29940232 29940405 -152474837 + L1M3c LINE L1 11 176 -5965 1843 209 19 8 chr6 29940405 29940764 -152474478 - MLT1A1 LTR MaLR 0 365 3 868 335 65 29 chr6 29940764 29941005 -152474237 + L1M3c LINE L1 176 440 -5701 465 271 0 8 chr6 29941005 29941123 -152474119 - LTR40c LTR ERVL -346 119 3 690 325 50 14 chr6 29941254 29941534 -152473708 + HERVL LTR ERVL 364 653 -4343 842 312 54 9 chr6 29941567 29941884 -152473358 + HERVL LTR ERVL 733 1063 -3933 2578 291 70 54 chr6 29941909 29942697 -152472545 + HERVL LTR ERVL 1667 2491 -2505 2282 64 61 10 chr6 29942697 29943003 -152472239 - AluY SINE Alu 0 321 1 2578 291 70 54 chr6 29943003 29943357 -152471885 + HERVL LTR ERVL 2491 2838 -2158 986 293 99 90 chr6 29943597 29944023 -152471219 + HERVL LTR ERVL 3214 3635 -2019 1857 160 3 49 chr6 29944023 29944348 -152470894 + AluSx SINE Alu 1 310 -2 986 293 99 90 chr6 29944348 29945492 -152469750 + HERVL LTR ERVL 3635 5104 -550 2156 112 3 29 chr6 29945518 29945832 -152469410 - AluSx SINE Alu -6 306 1 384 341 66 2 chr6 29946141 29946411 -152468831 + LTR16A LTR ERVL 73 399 -51 438 213 64 176 chr6 29946426 29946888 -152468354 + L2 LINE L2 2834 3296 -17 1173 296 67 48 chr6 29946888 29948022 -152467220 - L1MC/D LINE L1 -553 5609 4532 247 143 5 102 chr6 29948074 29948270 -152466972 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 * 417 197 0 34 chr6 29948261 29948439 -152466803 + (TA)n Simple_repeat Simple_repeat 2 173 0 312 273 67 34 chr6 29948762 29948971 -152466271 - L1MC4a LINE L1 -1722 6086 5871 261 57 0 0 chr6 29949257 29949292 -152465950 + (TG)n Simple_repeat Simple_repeat 1 35 0 855 224 20 5 chr6 29949596 29949792 -152465450 + MIR SINE MIR 12 210 -52 318 275 99 8 chr6 29950213 29950344 -152464898 - L1MC4a LINE L1 -1225 6583 6441 337 214 34 43 chr6 29950647 29950764 -152464478 - L1MC5 LINE L1 -36 7925 7810 262 199 35 28 chr6 29950768 29950909 -152464333 + CT-rich Low_complexity Low_complexity 5 146 0 563 221 45 111 chr6 29950948 29951397 -152463845 - L1MC5 LINE L1 -168 7793 7375 672 199 5 108 chr6 29951400 29951500 -152463742 - MER5B DNA MER1_type -7 171 97 1488 153 18 0 chr6 29951500 29951722 -152463520 - AluSx SINE Alu -84 228 3 672 199 5 108 chr6 29951722 29951807 -152463435 - MER5B DNA MER1_type -81 97 5 2467 80 0 19 chr6 29952129 29952442 -152462800 - AluSc SINE Alu -2 307 1 280 332 187 21 chr6 29952741 29952976 -152462266 - L2 LINE L2 -919 2395 2122 2428 149 196 40 chr6 29953040 29953571 -152461671 - LTR18B LTR ERVL 0 614 1 257 339 0 0 chr6 29953814 29953873 -152461369 - HERVL18 LTR ERVL -780 5267 5209 629 130 11 0 chr6 29953875 29953967 -152461275 - HERVL18 LTR ERVL -1561 4486 4394 5473 161 15 8 chr6 29953967 29954825 -152460417 - HERVL18 LTR ERVL -2466 3581 2718 1485 136 23 12 chr6 29954799 29955097 -152460145 - HERVL18 LTR ERVL -3570 2477 2119 * 1171 172 3 16 chr6 29955096 29955458 -152459784 - HERVL18 LTR ERVL -4237 1810 1390 * 499 206 0 0 chr6 29955445 29955537 -152459705 - HERVL18 LTR ERVL -5085 962 871 * 1467 197 19 4 chr6 29955544 29955813 -152459429 - HERVL18 LTR ERVL -5283 764 492 * 1500 197 13 16 chr6 29955795 29956100 -152459142 - HERVL18 LTR ERVL -5743 304 1 980 263 138 19 chr6 29956106 29956425 -152458817 - LTR18A LTR ERVL 0 357 1 533 226 266 23 chr6 29956425 29956602 -152458640 - MIR SINE MIR -28 234 15 694 186 23 16 chr6 29957237 29957366 -152457876 + MER2 DNA MER2_type 1 130 -215 875 171 0 19 chr6 29957367 29957525 -152457717 - FRAM SINE Alu -22 154 1 586 242 155 0 chr6 29957526 29957720 -152457522 + MER2 DNA MER2_type 122 345 0 * 1114 198 25 33 chr6 29957718 29957781 -152457461 - MLT1E2 LTR MaLR 0 626 564 2145 120 13 28 chr6 29957781 29958098 -152457144 + AluSx SINE Alu 1 312 0 1114 198 25 33 chr6 29958098 29958277 -152456965 - MLT1E2 LTR MaLR -62 564 386 1659 217 92 31 chr6 29959251 29959730 -152455512 - Charlie4a DNA MER1_type 0 508 1 724 261 93 19 chr6 29960228 29960443 -152454799 + MIR SINE MIR 3 233 -29 617 115 15 85 chr6 29960907 29961037 -152454205 - AluJb SINE Alu -1 311 191 1459 150 0 13 chr6 29961043 29961270 -152453972 - AluJb SINE Alu -82 230 7 352 324 94 0 chr6 29961302 29961472 -152453770 - L2 LINE L2 -9 3304 3119 646 134 0 31 chr6 29962275 29962372 -152452870 - FRAM SINE Alu -19 157 64 1580 199 0 20 chr6 29963141 29963437 -152451805 - AluJo SINE Alu -8 304 15 189 338 14 0 chr6 29963511 29963582 -152451660 + MIR SINE MIR 184 255 -7 270 309 72 33 chr6 29963645 29963797 -152451445 - MIR3 SINE MIR -6 202 45 1939 121 0 0 chr6 29963899 29964164 -152451078 - AluSx SINE Alu -8 304 40 2243 106 0 0 chr6 29966099 29966391 -152448851 - AluY SINE Alu -19 292 1 840 143 56 0 chr6 29966499 29966625 -152448617 - FLAM_C SINE Alu 0 133 1 2096 68 65 0 chr6 29966898 29967063 -152448179 - AluY SINE Alu -14 297 105 2375 39 28 3 chr6 29967063 29967346 -152447896 - L1PA5 LINE L1 0 6154 5865 2096 68 65 0 chr6 29967346 29967459 -152447783 - AluY SINE Alu -206 105 1 308 112 0 8 chr6 29968411 29968462 -152446780 - MLT2C1 LTR ERVL -8 389 350 257 238 38 0 chr6 29968462 29968542 -152446700 + (TA)n Simple_repeat Simple_repeat 2 84 0 1388 237 134 30 chr6 29968543 29968977 -152446265 - MLT2B1 LTR ERVL -41 479 1 239 214 0 0 chr6 29969190 29969232 -152446010 + L2 LINE L2 3194 3235 -37 214 214 298 0 chr6 29969390 29969474 -152445768 - L2 LINE L2 -3 3269 3161 1237 273 94 3 chr6 29969559 29969900 -152445342 + REP3 LTR ERV 4 375 -187 1231 136 205 110 chr6 29969979 29970083 -152445159 + MER7A DNA MER2_type 1 94 -2944 1765 159 14 0 chr6 29970083 29970359 -152444883 + AluJo SINE Alu 11 290 -22 1231 136 205 110 chr6 29970359 29970571 -152444671 + MER7A DNA MER2_type 94 345 -1 1854 137 0 58 chr6 29970925 29971238 -152444004 + AluJo SINE Alu 1 295 -17 5695 235 79 44 chr6 29971702 29971858 -152443384 - L1M4 LINE L1 -798 5348 5199 2537 74 0 0 chr6 29971858 29972167 -152443075 - AluSc SINE Alu 0 309 1 5695 235 79 44 chr6 29972167 29974072 -152441170 - L1M4 LINE L1 -947 5199 3215 1659 195 49 11 chr6 29974079 29974428 -152440814 - L1MA6 LINE L1 0 6300 5939 1726 218 68 10 chr6 29974450 29974949 -152440293 - L1M4 LINE L1 -2961 3185 2658 785 164 114 20 chr6 29974943 29975144 -152440098 + L1MDa LINE L1 1157 1376 -5164 * 784 258 48 5 chr6 29975226 29975435 -152439807 - L1MDa LINE L1 -6320 220 3 294 293 121 36 chr6 29975436 29975576 -152439666 + L2 LINE L2 3162 3313 0 2323 113 0 0 chr6 29975740 29976050 -152439192 - AluSq SINE Alu -3 310 1 2374 85 7 0 chr6 29976605 29976898 -152438344 + AluSc SINE Alu 1 295 -14 946 224 79 58 chr6 29976899 29977229 -152438013 + L1ME1 LINE L1 5825 6161 -5 1857 170 3 10 chr6 29977251 29977557 -152437685 + AluJo SINE Alu 1 304 -8 959 305 77 8 chr6 29977593 29978124 -152437118 + L1M4 LINE L1 3364 3931 -2215 2377 89 0 3 chr6 29978495 29978799 -152436443 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr6 29978992 29979013 -152436229 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr6 29979991 29980011 -152435231 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 380 217 43 11 chr6 29982211 29982303 -152432939 - MIR SINE MIR -98 164 70 830 198 132 22 chr6 29983096 29983323 -152431919 - MIR SINE MIR 0 262 11 523 276 42 3 chr6 29984730 29984933 -152430309 + MIR SINE MIR 3 261 -1 2185 118 3 7 chr6 29985996 29986300 -152428942 - AluSc SINE Alu -6 303 1 1449 229 36 22 chr6 29986855 29987218 -152428024 + MER87 LTR ERV1 174 541 0 411 293 81 7 chr6 29988670 29988835 -152426407 + MER5A DNA MER1_type 1 188 -1 199 378 54 0 chr6 29988848 29988959 -152426283 + MIR SINE MIR 30 146 -62 243 336 86 52 chr6 29989408 29989524 -152425718 + L2 LINE L2 3139 3258 -14 442 181 16 94 chr6 29991295 29991346 -152423896 - L1MC4 LINE L1 -66 7976 7923 2471 79 7 0 chr6 29991346 29991651 -152423591 - AluSg SINE Alu -3 307 1 442 181 16 94 chr6 29991651 29991726 -152423516 - L1MC4 LINE L1 -119 7923 7860 269 305 21 21 chr6 29992303 29992398 -152422844 + L2 LINE L2 2957 3051 -221 288 328 11 23 chr6 29992492 29992672 -152422570 + GA-rich Low_complexity Low_complexity 1 182 -304 1509 171 27 8 chr6 29992672 29992930 -152422312 + AluJo SINE Alu 39 301 -11 288 328 11 23 chr6 29992930 29992984 -152422258 + GA-rich Low_complexity Low_complexity 182 486 0 266 237 86 21 chr6 29993362 29993455 -152421787 + MIR SINE MIR 17 115 -147 2319 241 14 74 chr6 29993884 29994112 -152421130 + L2 LINE L2 2135 2375 -939 2289 107 0 0 chr6 29994112 29994410 -152420832 - AluSx SINE Alu -14 298 1 2319 241 14 74 chr6 29994410 29994953 -152420289 + L2 LINE L2 2375 2860 -454 378 304 44 39 chr6 29994979 29995183 -152420059 + L2 LINE L2 2951 3155 -158 1409 127 38 5 chr6 29995195 29995407 -152419835 - AluJo SINE Alu -12 300 82 439 336 14 0 chr6 29995408 29995548 -152419694 + L2 LINE L2 3164 3305 -8 2063 145 3 0 chr6 29995768 29996079 -152419163 - AluSx SINE Alu 0 312 1 877 179 0 148 chr6 29996204 29996461 -152418781 - MER20 DNA MER1_type 0 219 1 2538 26 0 51 chr6 29997811 29998123 -152417119 + AluY SINE Alu 1 296 -15 273 316 31 10 chr6 29998387 29998485 -152416757 + MIR3 SINE MIR 103 202 -6 1320 281 115 25 chr6 29999387 30000750 -152414492 + L1MC/D LINE L1 4203 5695 -743 318 352 93 43 chr6 30000832 30001207 -152414035 - L2 LINE L2 -799 2515 2122 1046 248 58 62 chr6 30002118 30002712 -152412530 + MLT1H1 LTR MaLR 1 583 -7 7649 50 0 0 chr6 30002987 30004259 -152410983 - L1PA6 LINE L1 -3 6151 4876 2237 99 0 0 chr6 30004505 30004817 -152410425 + AluSx SINE Alu 1 312 0 258 266 110 52 chr6 30005463 30005636 -152409606 + HAL1 LINE L1 2292 2474 -33 822 229 0 7 chr6 30005785 30005938 -152409304 + FRAM SINE Alu 8 159 -17 1816 197 60 52 chr6 30006549 30006996 -152408246 - MER74C LTR ERVL 0 460 10 212 259 37 0 chr6 30007011 30007065 -152408177 + MIR SINE MIR 86 141 -67 214 297 0 0 chr6 30009366 30009440 -152405802 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 310 29 0 0 chr6 30009445 30009480 -152405762 + U2 snRNA snRNA 1 35 -153 1149 131 0 12 chr6 30009542 30009710 -152405532 + AluJo SINE Alu 1 166 -146 3695 152 44 93 chr6 30009713 30010458 -152404784 - L1P4 LINE L1 -374 5792 5054 851 88 0 0 chr6 30010458 30010572 -152404670 - AluY SINE Alu -7 304 191 3695 152 44 93 chr6 30010572 30011217 -152404025 - L1P4 LINE L1 -1112 5054 4379 201 175 0 0 chr6 30011252 30011292 -152403950 + GA-rich Low_complexity Low_complexity 2 41 0 1841 173 0 29 chr6 30011306 30011619 -152403623 + AluJo SINE Alu 1 304 -8 1757 178 101 21 chr6 30011628 30011966 -152403276 - MLT1A1 LTR MaLR 0 365 1 1943 111 76 3 chr6 30012079 30012368 -152402874 + AluSg SINE Alu 1 310 0 1689 203 16 0 chr6 30012630 30012936 -152402306 - AluJb SINE Alu 0 312 2 337 284 114 34 chr6 30013264 30013440 -152401802 + L2 LINE L2 3032 3221 -92 1069 283 62 44 chr6 30013567 30013739 -152401503 - L1ME LINE L1 -5358 712 545 2118 77 48 0 chr6 30013739 30014034 -152401208 - AluSq SINE Alu 0 308 1 1069 283 62 44 chr6 30014034 30014359 -152400883 - L1ME LINE L1 -5525 545 205 244 313 184 6 chr6 30015098 30015261 -152399981 + MIR SINE MIR 21 212 -50 292 214 183 1 chr6 30015521 30015615 -152399627 - MER5A DNA MER1_type 0 189 62 2556 33 10 3 chr6 30015946 30016245 -152398997 - AluY SINE Alu -10 301 1 290 214 67 45 chr6 30016409 30016498 -152398744 + MIR SINE MIR 116 206 -56 209 237 0 0 chr6 30016530 30016568 -152398674 + MIR SINE MIR 7 44 -218 712 184 9 0 chr6 30016807 30016916 -152398326 + FLAM_C SINE Alu 2 111 -32 861 81 0 0 chr6 30016973 30017084 -152398158 - L1MA1 LINE L1 0 6302 6192 183 42 0 0 chr6 30017085 30017109 -152398133 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2335 75 0 0 chr6 30017109 30017390 -152397852 - AluY SINE Alu -30 281 1 909 203 0 0 chr6 30017392 30017555 -152397687 - FRAM SINE Alu -12 164 2 24 53 0 0 chr6 30017791 30017829 -152397413 + AT_rich Low_complexity Low_complexity 1 38 0 1527 213 13 16 chr6 30018016 30018326 -152396916 + AluJo SINE Alu 1 309 -3 3358 236 45 67 chr6 30019867 30021410 -152393832 + L1MC5 LINE L1 6414 7931 -30 16724 113 24 13 chr6 30023266 30024498 -152390744 - Tigger1 DNA MER2_type 0 2418 1143 1687 154 4 4 chr6 30024498 30024781 -152390461 - AluJb SINE Alu 0 305 23 16724 113 24 13 chr6 30024781 30025938 -152389304 - Tigger1 DNA MER2_type -1275 1143 1 2032 88 66 4 chr6 30025995 30026268 -152388974 - AluSq SINE Alu -23 290 1 217 347 0 25 chr6 30026353 30026474 -152388768 + L2 LINE L2 1902 2019 -1295 2316 164 0 0 chr6 30026532 30026880 -152388362 - MER7A DNA MER2_type 0 346 1 2136 101 21 0 chr6 30026973 30027259 -152387983 + AluSp SINE Alu 1 292 -21 227 319 60 118 chr6 30027291 30027912 -152387330 + L2 LINE L2 2157 2741 -573 219 310 142 18 chr6 30028389 30028502 -152386740 + L2 LINE L2 3139 3265 -7 189 0 0 0 chr6 30029553 30029574 -152385668 + (CCAA)n Simple_repeat Simple_repeat 1 21 0 636 144 21 0 chr6 30030527 30030624 -152384618 - MER94 DNA DNA -35 99 1 412 255 28 9 chr6 30030651 30030757 -152384485 - MER5A DNA MER1_type -51 138 31 577 230 89 30 chr6 30031854 30032124 -152383118 + L1MC4a LINE L1 5746 6031 -1777 25 65 0 0 chr6 30032202 30032248 -152382994 + AT_rich Low_complexity Low_complexity 1 46 0 555 234 131 17 chr6 30032424 30032599 -152382643 + MIR3 SINE MIR 8 202 -6 26 64 0 0 chr6 30033232 30033279 -152381963 + AT_rich Low_complexity Low_complexity 1 47 0 769 284 13 0 chr6 30034435 30034590 -152380652 + L2 LINE L2 3116 3272 0 196 266 89 65 chr6 30036118 30036242 -152379000 + MIR SINE MIR 112 238 -24 1838 101 0 4 chr6 30036538 30036785 -152378457 + AluSx SINE Alu 64 309 -3 421 195 24 0 chr6 30036884 30036966 -152378276 + MER112 DNA MER1_type 2 85 -175 2356 101 0 0 chr6 30037264 30037571 -152377671 - AluSx SINE Alu -4 308 2 2927 69 16 24 chr6 30037637 30038013 -152377229 - THE1C LTR MaLR -2 373 1 2080 102 39 7 chr6 30038278 30038562 -152376680 - AluSg SINE Alu -17 293 1 191 194 0 0 chr6 30038641 30038677 -152376565 - L2 LINE L2 0 3313 3278 520 229 37 0 chr6 30038677 30038786 -152376456 - L2 LINE L2 -11 3302 3190 974 263 16 31 chr6 30038795 30039050 -152376192 - MIR SINE MIR 0 262 12 998 269 83 16 chr6 30039107 30039658 -152375584 - L2 LINE L2 -144 3169 2577 2176 113 3 3 chr6 30041050 30041352 -152373890 - AluSq SINE Alu -11 302 1 470 286 64 7 chr6 30041371 30041511 -152373731 + MIR SINE MIR 85 232 -30 759 188 46 130 chr6 30041851 30042112 -152373130 + MIR SINE MIR 3 241 -21 493 147 42 11 chr6 30042847 30042942 -152372300 - MIR SINE MIR -51 211 114 1146 210 95 65 chr6 30042943 30043118 -152372124 - L1MC4 LINE L1 -898 7144 6976 1306 126 239 8 chr6 30043118 30043357 -152371885 - AluSx SINE Alu -8 294 1 1146 210 95 65 chr6 30043357 30043581 -152371661 - L1MC4 LINE L1 -1066 6976 6733 4769 130 79 14 chr6 30043593 30044369 -152370873 - LTR12 LTR ERV1 0 826 1 267 145 0 108 chr6 30044369 30044452 -152370790 - L1MC4a LINE L1 -1140 6668 6595 303 107 89 18 chr6 30044478 30044646 -152370596 + (TA)n Simple_repeat Simple_repeat 1 180 0 760 278 127 50 chr6 30044655 30045515 -152369727 - L1MC4a LINE L1 -1190 6618 5693 395 259 28 0 chr6 30045536 30045644 -152369598 - L1MC4a LINE L1 -2247 5561 5451 1090 228 135 17 chr6 30045712 30046068 -152369174 + L1ME3A LINE L1 5493 5890 -280 24 0 0 0 chr6 30047079 30047103 -152368139 + AT_rich Low_complexity Low_complexity 1 24 0 203 189 0 0 chr6 30048484 30048521 -152366721 + A-rich Low_complexity Low_complexity 1 37 0 578 299 47 8 chr6 30048523 30048777 -152366465 + L1ME3A LINE L1 5896 6159 -11 232 302 198 17 chr6 30048793 30048909 -152366333 - MIR SINE MIR -56 152 16 2317 111 3 0 chr6 30048948 30049254 -152365988 - AluSq SINE Alu -6 307 1 1639 65 69 48 chr6 30049421 30049652 -152365590 - AluY SINE Alu -18 293 58 445 331 184 4 chr6 30049869 30050141 -152365101 + L2 LINE L2 2216 2536 -778 5060 130 32 1 chr6 30050152 30051031 -152364211 - L1MA4A LINE L1 -3 6300 5395 895 191 0 24 chr6 30051031 30051199 -152364043 + AluJb SINE Alu 146 309 -3 22 0 0 0 chr6 30051321 30051343 -152363899 + AT_rich Low_complexity Low_complexity 1 22 0 2040 102 3 18 chr6 30051388 30051692 -152363550 - AluSg SINE Alu 0 300 1 343 254 149 0 chr6 30051693 30051827 -152363415 - L1ME LINE L1 -352 5818 5665 957 315 51 31 chr6 30051923 30052469 -152362773 + LTR67 LTR ERVL 1 557 0 360 70 53 0 chr6 30052779 30052836 -152362406 - Alu SINE Alu -3 297 238 22 35 0 0 chr6 30052888 30052917 -152362325 + AT_rich Low_complexity Low_complexity 1 29 0 480 245 14 68 chr6 30053061 30053208 -152362034 + MER69A DNA AcHobo 39 177 0 229 283 66 69 chr6 30053211 30053529 -152361713 - L1ME LINE L1 -927 5219 4903 278 253 53 21 chr6 30053638 30053733 -152361509 - HERV16 LTR ERVL -310 4686 4589 360 0 0 0 chr6 30053733 30053773 -152361469 + (TTCTC)n Simple_repeat Simple_repeat 2 41 0 849 329 54 14 chr6 30053781 30054207 -152361035 - HERV16 LTR ERVL -765 4999 4557 327 348 19 25 chr6 30054352 30054510 -152360732 - HERV16 LTR ERVL -1397 4257 4101 212 59 29 0 chr6 30055490 30055524 -152359718 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5603 154 51 7 chr6 30056279 30057386 -152357856 + L1MC1 LINE L1 5180 6333 0 873 133 0 23 chr6 30058170 30058298 -152356944 - FLAM_C SINE Alu -6 127 3 292 305 61 15 chr6 30058712 30058843 -152356399 - MER5A DNA MER1_type -46 143 7 974 323 62 12 chr6 30058862 30059265 -152355977 - L2 LINE L2 -2 3311 2889 209 324 0 14 chr6 30059772 30059843 -152355399 - L2 LINE L2 0 3313 3244 2317 85 0 0 chr6 30060036 30060330 -152354912 - AluSc SINE Alu -15 294 1 1618 308 87 28 chr6 30060364 30061469 -152353773 + HAL1 LINE L1 1 1170 -1337 312 70 0 0 chr6 30061737 30061780 -152353462 + (CA)n Simple_repeat Simple_repeat 2 44 0 607 242 199 26 chr6 30062073 30062302 -152352940 + HAL1 LINE L1 1214 1402 -1105 270 0 0 0 chr6 30062302 30062332 -152352910 + (TG)n Simple_repeat Simple_repeat 2 31 0 607 242 199 26 chr6 30062332 30062519 -152352723 + HAL1 LINE L1 1402 1702 -805 388 246 218 0 chr6 30062979 30063158 -152352084 + HAL1 LINE L1 1700 1917 -590 311 315 55 62 chr6 30063225 30063288 -152351954 + HAL1 LINE L1 2084 2146 -361 1837 179 0 3 chr6 30063288 30063590 -152351652 + AluJb SINE Alu 1 301 -11 311 315 55 62 chr6 30063590 30063797 -152351445 + HAL1 LINE L1 2146 2354 -153 1938 133 3 70 chr6 30063797 30064128 -152351114 + AluSx SINE Alu 1 309 -3 311 315 55 62 chr6 30064128 30064148 -152351094 + HAL1 LINE L1 2354 2373 -134 228 267 52 47 chr6 30064153 30064325 -152350917 + HAL1 LINE L1 2335 2507 0 207 0 0 0 chr6 30064648 30064671 -152350571 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 216 0 0 0 chr6 30065511 30065535 -152349707 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr6 30066016 30066039 -152349203 + (TAA)n Simple_repeat Simple_repeat 1 23 0 375 260 81 16 chr6 30066047 30066170 -152349072 - MIR SINE MIR -44 218 88 1988 133 27 7 chr6 30066330 30066624 -152348618 + AluSx SINE Alu 1 300 -12 532 143 209 0 chr6 30067303 30067394 -152347848 + FLAM_C SINE Alu 11 120 -23 201 242 136 0 chr6 30067485 30067551 -152347691 - L2 LINE L2 -31 3282 3208 4275 133 47 59 chr6 30067684 30069092 -152346150 - pTR5 LTR ERV1 -13 2425 743 2163 89 7 0 chr6 30069830 30070121 -152345121 + AluSx SINE Alu 1 293 -19 42 0 0 0 chr6 30070239 30070281 -152344961 + AT_rich Low_complexity Low_complexity 1 42 0 431 262 64 14 chr6 30070320 30070461 -152344781 + L1MEc LINE L1 259 406 -5990 * 3823 164 8 29 chr6 30070460 30071229 -152344013 - L1MC3 LINE L1 -857 6928 6176 1113 61 0 0 chr6 30071465 30071597 -152343645 + AluY SINE Alu 1 132 -179 317 343 71 0 chr6 30072442 30072582 -152342660 - MIR SINE MIR -73 189 40 537 260 4 122 chr6 30072829 30073075 -152342167 + L2 LINE L2 3094 3310 -3 580 95 0 0 chr6 30073727 30073801 -152341441 - tRNA-Thr-ACT tRNA tRNA -3 74 1 270 247 161 16 chr6 30074720 30074781 -152340461 - L1M4 LINE L1 -1712 4434 4383 2286 108 0 9 chr6 30074781 30075096 -152340146 - AluSx SINE Alu 0 312 1 270 247 161 16 chr6 30075096 30075220 -152340022 - L1M4 LINE L1 -1763 4383 4222 22 56 0 0 chr6 30075392 30075428 -152339814 + AT_rich Low_complexity Low_complexity 1 36 0 1455 211 88 55 chr6 30076305 30076794 -152338448 - MLT1D LTR MaLR 0 505 1 334 345 24 43 chr6 30076803 30077012 -152338230 + MIR SINE MIR 58 262 0 240 328 154 33 chr6 30077026 30077389 -152337853 + L1MC/D LINE L1 5494 5900 -1908 696 37 0 0 chr6 30077798 30077880 -152337362 - tRNA-Leu-CTT tRNA tRNA -3 82 1 507 251 8 123 chr6 30078656 30078788 -152336454 + MIR SINE MIR 53 148 -114 1320 103 0 0 chr6 30078788 30078973 -152336269 + L1PB1 LINE L1 5964 6148 -3 507 251 8 123 chr6 30078973 30079075 -152336167 + MIR SINE MIR 148 260 -2 331 222 0 0 chr6 30079902 30079974 -152335268 + tRNA-Met-e tRNA tRNA 1 72 -3 856 202 11 0 chr6 30080203 30080386 -152334856 - MLT1D LTR MaLR 0 505 321 274 213 62 0 chr6 30080450 30080530 -152334712 + MER70-int LTR ERVL 482 566 -4457 475 340 39 12 chr6 30080871 30081130 -152334112 - MER70-int LTR ERVL -4196 827 562 496 313 0 0 chr6 30081178 30081344 -152333898 + MER70-int LTR ERVL 2446 2611 -2412 807 220 35 4 chr6 30081388 30081620 -152333622 + L1M4 LINE L1 4480 4718 -1428 720 300 47 39 chr6 30081633 30082016 -152333226 + MER70-int LTR ERVL 2760 3145 -1878 592 110 0 0 chr6 30082024 30082106 -152333136 + AluJb SINE Alu 209 290 -22 464 230 24 6 chr6 30082219 30082384 -152332858 - L1M4 LINE L1 -1610 4536 4369 2167 211 30 113 chr6 30082407 30083588 -152331654 - L1M4 LINE L1 -2305 3841 2759 247 242 16 0 chr6 30083592 30083654 -152331588 + (TA)n Simple_repeat Simple_repeat 2 64 0 2742 17 0 0 chr6 30083732 30084033 -152331209 - AluYa5 SINE Alu -10 301 1 753 207 0 7 chr6 30084070 30084215 -152331027 + AluJb SINE Alu 134 277 -35 549 230 80 49 chr6 30084283 30084509 -152330733 - LTR16A1 LTR ERVL -109 348 116 2736 178 71 26 chr6 30084551 30085215 -152330027 - LTR8A LTR ERV1 0 727 34 1370 206 26 41 chr6 30085447 30085649 -152329593 - MLT1C LTR MaLR 0 467 272 4112 122 27 37 chr6 30085649 30086347 -152328895 - LTR8 LTR ERV1 0 691 1 1370 206 26 41 chr6 30086347 30086532 -152328710 - MLT1C LTR MaLR -195 272 86 * 2360 110 48 0 chr6 30086531 30086886 -152328356 - MER83 LTR ERV1 -76 372 1 367 217 47 85 chr6 30086886 30087010 -152328232 - LTR8 LTR ERV1 -572 119 1 503 344 37 9 chr6 30087077 30087292 -152327950 - MIR SINE MIR -4 258 38 1496 101 5 0 chr6 30087439 30087638 -152327604 + AluSx SINE Alu 1 200 -112 400 86 0 0 chr6 30087638 30087696 -152327546 + AluSx SINE Alu 241 298 -12 570 81 0 0 chr6 30088168 30088242 -152327000 - tRNA-Thr-ACT tRNA tRNA -3 74 1 231 114 0 0 chr6 30088892 30088927 -152326315 + (T)n Simple_repeat Simple_repeat 1 35 0 293 246 0 0 chr6 30090002 30090067 -152325175 + tRNA-Leu-CTT tRNA tRNA 1 65 -20 7917 63 8 4 chr6 30090222 30091225 -152324017 + LTR13 LTR ERVK 1 1007 0 265 265 24 0 chr6 30091595 30091678 -152323564 + MIR SINE MIR 178 262 0 255 263 45 60 chr6 30091946 30092212 -152323030 - L1M4 LINE L1 -3010 3136 2875 314 320 109 30 chr6 30092241 30092782 -152322460 - L1M4 LINE L1 -3302 2844 2261 306 325 67 0 chr6 30093235 30093355 -152321887 + L2 LINE L2 2221 2348 -966 2213 108 7 3 chr6 30094393 30094690 -152320552 - AluSx SINE Alu -14 298 1 1473 158 110 0 chr6 30095519 30095802 -152319440 - AluJb SINE Alu 0 311 1 1012 219 214 11 chr6 30096116 30096472 -152318770 - MER31B LTR ERV1 0 466 39 3459 227 47 14 chr6 30096493 30097260 -152317982 - MER21B LTR ERV1 -54 809 18 430 209 0 44 chr6 30097281 30097372 -152317870 - MER21B LTR ERV1 -776 87 1 377 98 0 0 chr6 30097372 30097423 -152317819 - MER31B LTR ERV1 -415 51 1 780 226 51 0 chr6 30097667 30097844 -152317398 - MER5A DNA MER1_type 0 189 4 891 253 97 90 chr6 30097972 30098407 -152316835 + LTR16A1 LTR ERVL 20 457 0 183 175 53 0 chr6 30099096 30099153 -152316089 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2138 131 6 6 chr6 30099959 30100272 -152314970 - AluSq SINE Alu 0 313 1 9371 58 3 150 chr6 30100690 30102311 -152312931 + SVA Other Other 2 1384 -2 362 211 9 0 chr6 30103198 30103312 -152311930 + (CA)n Simple_repeat Simple_repeat 2 116 0 200 313 45 0 chr6 30103978 30104045 -152311197 + MIR3 SINE MIR 90 159 -49 270 0 0 0 chr6 30105882 30105912 -152309330 + (CA)n Simple_repeat Simple_repeat 2 31 0 181 227 173 40 chr6 30106588 30106663 -152308579 + MIR3 SINE MIR 90 174 -34 282 203 54 0 chr6 30106669 30106743 -152308499 + L1MC/D LINE L1 5760 5837 -1971 1834 126 7 14 chr6 30106743 30107020 -152308222 - AluSx SINE Alu -13 299 25 345 157 0 0 chr6 30107020 30107071 -152308171 - Alu SINE Alu -252 51 1 200 128 0 26 chr6 30107334 30107373 -152307869 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 1956 153 0 3 chr6 30107699 30107987 -152307255 + AluSx SINE Alu 1 287 -25 2004 127 7 45 chr6 30108413 30108721 -152306521 + AluSx SINE Alu 1 296 -16 2545 235 13 13 chr6 30109160 30109717 -152305525 + MER90 LTR ERV1 1 557 -18 905 165 203 5 chr6 30110588 30110796 -152304446 + LTR1 LTR ERV1 7 253 -532 4122 99 230 111 chr6 30110833 30112216 -152303026 + pTR5 LTR ERV1 743 2438 0 2635 113 56 30 chr6 30112266 30112692 -152302550 + LTR1 LTR ERV1 348 784 -1 619 214 69 0 chr6 30113787 30113932 -152301310 + MER5A DNA MER1_type 35 189 0 594 267 27 11 chr6 30115420 30115607 -152299635 + MIR SINE MIR 49 238 -24 198 287 104 26 chr6 30115629 30115744 -152299498 - MIR SINE MIR -67 141 18 333 270 8 24 chr6 30116901 30117027 -152298215 - L3 LINE CR1 -802 775 652 1667 185 0 3 chr6 30117437 30117724 -152297518 - AluJb SINE Alu -26 286 1 327 25 0 0 chr6 30118073 30118113 -152297129 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 111 0 0 chr6 30118400 30118427 -152296815 + (T)n Simple_repeat Simple_repeat 1 27 0 262 296 165 34 chr6 30118521 30118697 -152296545 + MIR SINE MIR 57 255 -7 315 214 40 56 chr6 30118857 30118983 -152296259 - L1MC5 LINE L1 -36 7925 7802 231 348 27 9 chr6 30119543 30119655 -152295587 - MIR3 SINE MIR -13 195 82 218 298 0 0 chr6 30120778 30120861 -152294381 + MIR SINE MIR 30 111 -151 2349 101 0 3 chr6 30121102 30121400 -152293842 + AluSq SINE Alu 1 297 -16 309 200 118 0 chr6 30122325 30122410 -152292832 - MIR SINE MIR -89 173 79 21 0 0 0 chr6 30123146 30123167 -152292075 + AT_rich Low_complexity Low_complexity 1 21 0 3519 65 9 0 chr6 30123827 30124274 -152290968 + L1PA13 LINE L1 5710 6160 -3 26 64 0 0 chr6 30124298 30124345 -152290897 + AT_rich Low_complexity Low_complexity 1 47 0 241 210 111 0 chr6 30124468 30124549 -152290693 - L1MC/D LINE L1 -2330 5478 5389 183 157 206 69 chr6 30125990 30126092 -152289150 + MIR SINE MIR 86 201 -61 180 77 0 0 chr6 30126681 30126707 -152288535 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 393 261 117 50 chr6 30127439 30127619 -152287623 - MIR3 SINE MIR -6 202 11 2902 77 25 5 chr6 30127943 30127959 -152287283 - L1MA2 LINE L1 -15 6289 6275 768 52 0 0 chr6 30127959 30128056 -152287186 + (TA)n Simple_repeat Simple_repeat 2 98 0 2902 77 25 5 chr6 30128056 30128440 -152286802 - L1MA2 LINE L1 -29 6275 5881 23 0 0 0 chr6 30128851 30128874 -152286368 + AT_rich Low_complexity Low_complexity 1 23 0 944 235 17 52 chr6 30128919 30129149 -152286093 + MER58A DNA MER1_type 1 222 -2 1708 94 0 9 chr6 30130350 30130601 -152284641 + AluSg/x SINE Alu 87 335 0 329 262 60 54 chr6 30130601 30130750 -152284492 + MER5B DNA MER1_type 29 178 0 288 274 59 10 chr6 30130778 30130880 -152284362 + MIR SINE MIR 39 145 -63 210 386 71 0 chr6 30131866 30131993 -152283249 - L2 LINE L2 0 3272 3137 1904 152 3 23 chr6 30132008 30132317 -152282925 + AluJo SINE Alu 1 303 -9 430 141 0 13 chr6 30132507 30132585 -152282657 + AluJ/FRAM SINE Alu 227 303 -9 950 291 67 35 chr6 30134254 30134625 -152280617 + LTR16A LTR ERVL 66 448 -2 987 333 62 21 chr6 30134628 30135099 -152280143 + HERV16 LTR ERVL 2 491 -4505 1081 203 13 22 chr6 30135105 30135337 -152279905 + AluJo SINE Alu 8 237 -75 999 280 61 19 chr6 30135535 30135896 -152279346 + HERV16 LTR ERVL 913 1288 -3708 22 0 0 0 chr6 30135926 30135948 -152279294 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr6 30136035 30136057 -152279185 + AT_rich Low_complexity Low_complexity 1 22 0 265 163 10 9 chr6 30137123 30137326 -152277916 + AluJb SINE Alu 1 293 -9 1944 153 0 16 chr6 30138033 30138341 -152276901 - AluSx SINE Alu -9 303 1 1194 256 41 93 chr6 30138341 30138856 -152276386 + MLT1H LTR MaLR 62 549 0 21 0 0 0 chr6 30139296 30139317 -152275925 + AT_rich Low_complexity Low_complexity 1 21 0 1232 260 102 16 chr6 30139627 30140253 -152274989 + HAL1 LINE L1 1533 2242 -265 383 163 113 12 chr6 30140288 30140368 -152274874 + L1M4b LINE L1 31 118 -6741 1461 124 5 0 chr6 30140371 30140573 -152274669 + AluSg SINE Alu 2 204 -106 648 254 63 64 chr6 30140573 30140877 -152274365 + L1ME1 LINE L1 5858 6162 -4 1695 119 0 20 chr6 30140994 30141246 -152273996 - AluSc SINE Alu -5 304 58 227 167 0 0 chr6 30141514 30141550 -152273692 - MER21B LTR ERV1 -371 492 457 657 14 0 0 chr6 30142290 30142362 -152272880 - tRNA-Arg-CGA tRNA tRNA -4 72 1 347 195 0 13 chr6 30143642 30143717 -152271525 + AluS SINE Alu 1 59 -249 248 197 0 33 chr6 30143717 30143778 -152271464 + G-rich Low_complexity Low_complexity 2 60 0 407 124 41 113 chr6 30143785 30143882 -152271360 + FLAM_A SINE Alu 39 128 -5 826 317 99 16 chr6 30143919 30144594 -152270648 + L1M4 LINE L1 3347 4077 -2069 32 26 0 0 chr6 30144731 30144770 -152270472 + AT_rich Low_complexity Low_complexity 1 39 0 312 266 18 18 chr6 30145136 30145245 -152269997 - L1ME3A LINE L1 -5 6165 6057 1342 245 34 41 chr6 30145317 30145733 -152269509 - L1ME3A LINE L1 -112 6058 5646 335 255 49 20 chr6 30145736 30145838 -152269404 + LTR52 LTR ERVL 4 108 -313 1556 129 129 6 chr6 30145838 30146171 -152269071 - L1 LINE L1 -1556 4654 4281 * 6182 112 9 25 chr6 30146170 30147379 -152267863 + L1PB1 LINE L1 4975 6151 0 4397 166 33 1 chr6 30147384 30148258 -152266984 - L1 LINE L1 -1919 4291 3390 2021 200 32 36 chr6 30148269 30148763 -152266479 - MER21B LTR ERV1 -3 860 394 2844 229 70 18 chr6 30148801 30149701 -152265541 + MSTD-int LTR MaLR 740 1735 0 1884 196 12 53 chr6 30149701 30150114 -152265128 + MSTD LTR MaLR 1 396 0 1624 253 11 2 chr6 30150115 30150578 -152264664 - L1 LINE L1 -4716 1425 959 1492 220 13 5 chr6 30150593 30150989 -152264253 + L1MC3 LINE L1 2673 3071 -3075 301 180 0 0 chr6 30150987 30151048 -152264194 - L1M4 LINE L1 -1390 4756 4696 * 23 0 0 0 chr6 30151093 30151116 -152264126 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr6 30151226 30151251 -152263991 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 357 0 0 chr6 30151318 30151388 -152263854 + MIR3 SINE MIR 120 189 -19 876 181 38 5 chr6 30151945 30152155 -152263087 + L1MC3 LINE L1 4684 4900 -1246 1616 176 17 59 chr6 30152160 30152569 -152262673 + L1MC3 LINE L1 5639 6030 -1755 441 298 6 17 chr6 30152655 30152836 -152262406 + GA-rich Low_complexity Low_complexity 2 180 0 416 221 84 26 chr6 30152867 30153021 -152262221 + LTR41 LTR ERVL 1 163 -610 2739 162 106 4 chr6 30153103 30153651 -152261591 + LTR31 LTR ERV1 1 604 -15 456 205 168 31 chr6 30153891 30154054 -152261188 + LTR41 LTR ERVL 587 792 -3 300 211 0 21 chr6 30154763 30154858 -152260384 + L1MA4 LINE L1 6204 6296 -4 1239 159 155 65 chr6 30154948 30155078 -152260164 - AluJb SINE Alu 0 302 185 2122 113 0 7 chr6 30155078 30155369 -152259873 - AluSx SINE Alu 0 312 24 1239 159 155 65 chr6 30155369 30155515 -152259727 - AluJb SINE Alu -117 185 1 273 172 126 0 chr6 30155736 30155823 -152259419 - L1MC4a LINE L1 -1851 5957 5860 1217 260 42 82 chr6 30155823 30156350 -152258892 - L2 LINE L2 -4 3309 2804 2081 115 0 7 chr6 30156608 30156895 -152258347 + AluSg SINE Alu 1 285 -25 2231 67 0 76 chr6 30156906 30157234 -152258008 + AluY SINE Alu 3 305 -6 22 35 0 0 chr6 30157236 30157265 -152257977 + AT_rich Low_complexity Low_complexity 1 29 0 342 296 197 7 chr6 30157990 30158142 -152257100 + MER5A DNA MER1_type 9 189 0 710 168 156 42 chr6 30158150 30158174 -152257068 - MER5A DNA MER1_type 0 189 169 1860 188 37 0 chr6 30158174 30158526 -152256716 + MLT1A1 LTR MaLR 1 365 0 710 168 156 42 chr6 30158526 30158668 -152256574 - MER5A DNA MER1_type -20 169 4 215 195 0 0 chr6 30159554 30159595 -152255647 + L2 LINE L2 3272 3312 -1 273 321 44 44 chr6 30159602 30159739 -152255503 + L2 LINE L2 1784 1920 -1394 270 234 78 0 chr6 30159747 30159824 -152255418 - MLT1K LTR MaLR 0 588 506 2278 89 0 46 chr6 30160704 30161028 -152254214 - AluSg1 SINE Alu 0 309 1 21 57 0 0 chr6 30161583 30161618 -152253624 + AT_rich Low_complexity Low_complexity 1 35 0 2004 135 30 3 chr6 30161915 30162211 -152253031 - AluSc SINE Alu -5 304 1 257 299 64 67 chr6 30162855 30163199 -152252043 + MLT1L LTR MaLR 129 471 -144 301 264 203 28 chr6 30163281 30163463 -152251779 - HAL1 LINE L1 -1191 1316 1103 24 32 0 0 chr6 30163481 30163512 -152251730 + AT_rich Low_complexity Low_complexity 1 31 0 329 248 55 37 chr6 30163760 30163869 -152251373 - L1ME3A LINE L1 -241 5929 5819 329 207 60 66 chr6 30163869 30164022 -152251220 - L1ME3 LINE L1 -2 6332 6019 666 279 142 38 chr6 30164028 30164425 -152250817 - L1ME3 LINE L1 -346 5824 5470 1763 118 118 0 chr6 30164425 30164688 -152250554 - AluSx SINE Alu -18 294 1 666 279 142 38 chr6 30164688 30165310 -152249932 - L1ME3 LINE L1 -700 5470 4690 1929 199 7 17 chr6 30165448 30165861 -152249381 + LTR2 LTR ERV1 41 449 0 34 24 0 0 chr6 30165861 30165902 -152249340 + AT_rich Low_complexity Low_complexity 1 41 0 861 207 0 0 chr6 30165909 30166054 -152249188 - FRAM SINE Alu -31 145 1 1702 196 68 27 chr6 30166121 30166560 -152248682 - LTR2B LTR ERV1 0 490 34 2320 108 3 0 chr6 30167080 30167386 -152247856 + AluSg SINE Alu 1 307 -3 2057 138 0 0 chr6 30170207 30170498 -152244744 + AluSx SINE Alu 1 291 -21 202 151 164 0 chr6 30170776 30170849 -152244393 - MER5C DNA MER1_type -112 212 128 226 317 40 40 chr6 30171176 30171500 -152243742 - Charlie3 DNA MER1_type -320 2390 2107 489 356 18 22 chr6 30171666 30172520 -152242722 - Charlie1 DNA MER1_type -812 1949 1102 34 42 0 0 chr6 30173091 30173139 -152242103 + AT_rich Low_complexity Low_complexity 1 48 0 455 237 79 0 chr6 30173352 30173466 -152241776 - MER5C DNA MER1_type -200 124 2 2083 149 0 13 chr6 30175438 30175739 -152239503 - AluSx SINE Alu -15 297 1 1128 68 0 0 chr6 30175953 30176085 -152239157 - AluYb8 SINE Alu -186 132 1 4475 144 52 11 chr6 30176558 30177310 -152237932 + LTR39 LTR ERV1 1 783 0 974 83 0 0 chr6 30178940 30179061 -152236181 + AluSq/x SINE Alu 1 121 -191 1956 118 40 40 chr6 30179336 30179633 -152235609 + AluSx SINE Alu 2 298 -14 1904 170 0 3 chr6 30180230 30180530 -152234712 + AluJb SINE Alu 1 299 -13 342 286 71 92 chr6 30180613 30181096 -152234146 - MLT1L LTR MaLR -35 580 3 1460 115 50 0 chr6 30181324 30181542 -152233700 - MER30 DNA MER1_type 0 230 2 2292 91 0 7 chr6 30181815 30182124 -152233118 + AluSc SINE Alu 1 307 -2 2069 73 37 0 chr6 30182286 30182580 -152232662 + AluY SINE Alu 1 304 0 242 272 0 11 chr6 30183344 30183449 -152231793 - Tigger1 DNA MER2_type -942 1476 1291 261 291 37 30 chr6 30183847 30183981 -152231261 - Tigger7 DNA MER2_type -1550 937 803 430 254 77 41 chr6 30185000 30185169 -152230073 - MIR SINE MIR -45 217 43 214 295 123 41 chr6 30186890 30187033 -152228209 - MIR SINE MIR -21 187 32 338 307 85 11 chr6 30188026 30188215 -152227027 + MER69 DNA AcHobo 1 203 -2323 338 160 100 60 chr6 30188221 30188321 -152226921 + MER69 DNA AcHobo 2421 2524 -2 633 28 0 0 chr6 30188554 30188626 -152226616 + tRNA-Gln-CAA tRNA tRNA 1 72 -3 225 119 0 0 chr6 30189007 30189049 -152226193 + (T)n Simple_repeat Simple_repeat 1 42 0 706 206 71 139 chr6 30190564 30190953 -152224289 + MER31B LTR ERV1 3 466 0 667 159 0 8 chr6 30191129 30191261 -152223981 + L1MA6 LINE L1 3840 3970 -2176 5687 153 38 41 chr6 30191269 30192569 -152222673 + L1MA6 LINE L1 4134 5437 -863 2345 78 0 3 chr6 30192569 30192865 -152222377 + AluSx SINE Alu 2 296 -16 1663 153 3 55 chr6 30192866 30193192 -152222050 - AluJo SINE Alu 0 312 4 5687 153 38 41 chr6 30193192 30193548 -152221694 + L1MA6 LINE L1 5437 5776 -524 2039 137 17 0 chr6 30193548 30193840 -152221402 + AluSq SINE Alu 1 297 -16 5687 153 38 41 chr6 30193840 30194177 -152221065 + L1MA6 LINE L1 5776 6113 -187 1067 206 118 7 chr6 30194254 30194570 -152220672 + AluJb SINE Alu 1 346 0 2295 101 3 0 chr6 30194616 30194924 -152220318 + AluSq SINE Alu 1 309 -4 235 313 6 106 chr6 30194983 30195143 -152220099 - MER5A DNA MER1_type -24 165 22 895 271 38 42 chr6 30195143 30195594 -152219648 + L1MC4a LINE L1 5501 5948 -356 39 0 0 0 chr6 30195770 30195809 -152219433 + AT_rich Low_complexity Low_complexity 1 39 0 784 0 0 0 chr6 30196515 30196597 -152218645 - tRNA-Ser-AGC tRNA tRNA -3 82 1 223 261 120 11 chr6 30197311 30197403 -152217839 + MIR SINE MIR 35 136 -126 1733 134 47 0 chr6 30197784 30197859 -152217383 + AluSx SINE Alu 47 117 -195 405 0 0 0 chr6 30197859 30197904 -152217338 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1733 134 47 0 chr6 30197904 30198082 -152217160 + AluSx SINE Alu 117 312 0 2819 214 51 53 chr6 30198083 30198610 -152216632 + L1MC/D LINE L1 4275 4801 -1543 2258 138 76 9 chr6 30198610 30198951 -152216291 + THE1B LTR MaLR 1 364 0 2819 214 51 53 chr6 30198951 30199526 -152215716 + L1MC/D LINE L1 4801 5436 -908 1815 157 20 10 chr6 30199530 30199823 -152215419 + AluSx SINE Alu 5 300 -12 405 238 27 27 chr6 30199824 30200009 -152215233 + L1MC5 LINE L1 7506 7690 -271 321 26 0 0 chr6 30200037 30200075 -152215167 - MER4D LTR ERV1 -74 798 761 2454 56 0 13 chr6 30200075 30200380 -152214862 - AluY SINE Alu -10 301 1 614 229 65 19 chr6 30200390 30200604 -152214638 + L1MC5 LINE L1 7689 7912 -49 1657 166 18 22 chr6 30200715 30200992 -152214250 - AluSg SINE Alu -32 278 3 37 0 0 0 chr6 30201291 30201328 -152213914 + AT_rich Low_complexity Low_complexity 1 37 0 2061 129 7 0 chr6 30201388 30201683 -152213559 - AluSx SINE Alu -15 297 1 2452 47 23 10 chr6 30202132 30202433 -152212809 - AluY SINE Alu -6 305 1 238 236 82 45 chr6 30202450 30202560 -152212682 - L1M2 LINE L1 -4314 2535 2422 319 277 78 41 chr6 30202585 30202827 -152212415 - L1MDa LINE L1 -4749 1380 1130 313 220 0 0 chr6 30202903 30202962 -152212280 - MLT1E1 LTR MaLR -3 651 593 822 253 100 29 chr6 30203067 30203378 -152211864 - MLT1H LTR MaLR -226 369 1 443 329 69 32 chr6 30203384 30203510 -152211732 - L1MDa LINE L1 -5046 1073 953 2283 104 3 0 chr6 30203510 30203809 -152211433 + AluSx SINE Alu 1 300 -12 443 329 69 32 chr6 30203809 30204175 -152211067 - L1MDa LINE L1 -5166 953 563 904 256 160 39 chr6 30204617 30204727 -152210515 + L1MC4 LINE L1 7436 7531 -511 2246 84 3 43 chr6 30204727 30205049 -152210193 + AluSg SINE Alu 1 309 -1 904 256 160 39 chr6 30205049 30205474 -152209768 + L1MC4 LINE L1 7531 8036 -6 576 93 0 0 chr6 30206331 30206406 -152208836 + tRNA-Ala-GCG tRNA tRNA 1 75 0 22 0 0 0 chr6 30206652 30206674 -152208568 + AT_rich Low_complexity Low_complexity 1 22 0 4048 74 37 22 chr6 30207084 30207622 -152207620 + LTR14 LTR ERVK 3 548 0 1695 154 35 18 chr6 30207892 30208177 -152207065 + AluJo SINE Alu 1 290 -22 394 291 81 18 chr6 30208274 30208497 -152206745 + L1 LINE L1 4078 4314 -1832 771 268 41 12 chr6 30208543 30208786 -152206456 + L1MC5 LINE L1 6978 7227 -734 411 231 124 18 chr6 30208942 30209111 -152206131 + L1MC5 LINE L1 7283 7469 -492 1261 156 10 0 chr6 30209121 30209326 -152205916 + AluSq SINE Alu 3 209 -104 2316 85 14 3 chr6 30209415 30209709 -152205533 + AluSq SINE Alu 1 297 -16 186 43 0 0 chr6 30209720 30209743 -152205499 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 273 302 62 16 chr6 30210320 30210449 -152204793 + MER109 Unknown Unknown 469 603 -1829 * 11089 179 62 84 chr6 30210443 30211200 -152204042 + MER109 Unknown Unknown 1 773 -1659 2110 107 3 10 chr6 30211200 30211509 -152203733 - AluY SINE Alu 0 311 5 11089 179 62 84 chr6 30211509 30213129 -152202113 + MER109 Unknown Unknown 773 2427 -5 2352 97 3 3 chr6 30213129 30213438 -152201804 - AluSq SINE Alu -3 310 2 11089 179 62 84 chr6 30213438 30213632 -152201610 + MER109 Unknown Unknown 2427 2624 192 2281 119 0 0 chr6 30213632 30213934 -152201308 - AluSx SINE Alu -4 308 7 11089 179 62 84 chr6 30213934 30214509 -152200733 + MER109 Unknown Unknown 2624 1290 -1142 2080 102 46 0 chr6 30214509 30214793 -152200449 + AluSx SINE Alu 3 299 -13 11089 179 62 84 chr6 30214793 30215611 -152199631 + MER109 Unknown Unknown 1289 2123 -309 1037 129 48 47 chr6 30215744 30216073 -152199169 - LTR35 LTR ERV1 -228 390 1 245 29 0 29 chr6 30216158 30216193 -152199049 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1208 143 123 25 chr6 30216203 30216224 -152199018 - AluJb SINE Alu -44 268 250 1933 107 0 26 chr6 30216224 30216496 -152198746 - AluSx SINE Alu -47 265 1 201 74 0 0 chr6 30216496 30216523 -152198719 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1208 143 123 25 chr6 30216523 30216744 -152198498 - AluJb SINE Alu -61 251 1 5232 84 8 1 chr6 30216980 30217636 -152197606 - PABL_A LTR ERV1 0 660 1 1643 134 55 31 chr6 30217704 30217995 -152197247 + AluJo SINE Alu 7 304 -8 205 240 27 0 chr6 30218010 30218085 -152197157 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 245 307 93 0 chr6 30218104 30218179 -152197063 + MER21B LTR ERV1 26 107 -756 * 1185 201 55 4 chr6 30218176 30218444 -152196798 + MER21B LTR ERV1 19 324 -539 251 182 15 15 chr6 30218451 30218517 -152196725 + (TA)n Simple_repeat Simple_repeat 2 67 0 995 274 47 89 chr6 30218623 30218666 -152196576 - LTR16A LTR ERVL 0 450 407 1807 119 45 45 chr6 30218666 30218983 -152196259 - AluSx SINE Alu 0 318 2 995 274 47 89 chr6 30218983 30219198 -152196044 - LTR16A LTR ERVL -43 407 216 2145 90 36 0 chr6 30219198 30219475 -152195767 + AluSp SINE Alu 1 287 -26 995 274 47 89 chr6 30219475 30219683 -152195559 - LTR16A LTR ERVL -234 216 1 335 286 120 17 chr6 30219783 30219958 -152195284 + L1ME LINE L1 5298 5490 -680 1969 143 12 58 chr6 30219960 30220423 -152194819 + L1MA10 LINE L1 5169 5620 -548 * 45724 31 1 2 chr6 30220419 30226566 -152188676 + L1PA3 LINE L1 15 6152 -3 4264 129 28 43 chr6 30226567 30227310 -152187932 + L1MA10 LINE L1 5596 6327 -7 2154 130 0 0 chr6 30227324 30227624 -152187618 - AluSg SINE Alu -10 300 1 228 106 191 0 chr6 30227762 30227809 -152187433 - MLT2B1 LTR ERVL 0 515 460 243 192 17 50 chr6 30227809 30227929 -152187313 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 2136 198 58 22 chr6 30227940 30228385 -152186857 - MLT2B1 LTR ERVL -50 470 10 2444 69 0 7 chr6 30228484 30228789 -152186453 + AluY SINE Alu 1 303 -8 38 39 0 0 chr6 30228812 30228864 -152186378 + AT_rich Low_complexity Low_complexity 1 52 0 254 235 0 0 chr6 30228919 30228970 -152186272 + (ATG)n Simple_repeat Simple_repeat 2 52 0 2068 154 0 0 chr6 30229083 30229394 -152185848 + AluSx SINE Alu 1 311 -1 731 156 0 64 chr6 30229467 30229608 -152185634 + FLAM_A SINE Alu 1 132 -1 2717 108 17 6 chr6 30229690 30230050 -152185192 + THE1B LTR MaLR 1 364 0 2223 109 0 7 chr6 30230611 30230913 -152184329 + AluSx SINE Alu 1 300 -12 2128 100 0 4 chr6 30231050 30231365 -152183877 + AluSc SINE Alu 1 314 0 255 288 61 0 chr6 30231882 30231948 -152183294 - tRNA-Ala-GCG tRNA tRNA -3 72 3 495 155 0 0 chr6 30233256 30233327 -152181915 - tRNA-Ala-GCG tRNA tRNA -2 73 3 199 324 74 19 chr6 30233538 30233646 -152181596 + L2 LINE L2 3134 3247 -25 4999 139 27 13 chr6 30235287 30236115 -152179127 - L1MC1 LINE L1 -131 6482 5644 * 5985 157 43 54 chr6 30236112 30237333 -152177909 - L1MC1 LINE L1 -5216 1210 4 1661 189 20 0 chr6 30237406 30237708 -152177534 + AluSx SINE Alu 5 312 0 6930 142 119 86 chr6 30237839 30239482 -152175760 - pTR5 LTR ERV1 0 2438 742 2440 90 3 0 chr6 30239587 30239898 -152175344 + AluSx SINE Alu 1 312 0 1427 164 188 33 chr6 30240188 30240253 -152174989 - MSTA LTR MaLR -3 425 371 2494 46 0 7 chr6 30240253 30240556 -152174686 - AluY SINE Alu -7 304 4 1427 164 188 33 chr6 30240556 30240857 -152174385 - MSTA LTR MaLR -57 371 2 2338 95 0 3 chr6 30241480 30241785 -152173457 + AluSq SINE Alu 1 304 -9 1104 213 5 0 chr6 30241821 30242009 -152173233 - MER5A DNA MER1_type 0 189 1 659 28 0 0 chr6 30242620 30242692 -152172550 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 415 31 21 62 chr6 30242967 30243063 -152172179 + (TA)n Simple_repeat Simple_repeat 2 93 0 2401 49 39 0 chr6 30243063 30243349 -152171893 - AluY SINE Alu -14 297 1 3161 199 126 3 chr6 30243416 30244121 -152171121 + L1MC4 LINE L1 7090 7881 -161 2341 107 0 0 chr6 30244123 30244432 -152170810 - AluSg SINE Alu 0 310 2 195 100 0 0 chr6 30244460 30244490 -152170752 + (TG)n Simple_repeat Simple_repeat 2 31 0 190 140 20 20 chr6 30244517 30244567 -152170675 + (TA)n Simple_repeat Simple_repeat 2 51 0 203 125 25 0 chr6 30244649 30244689 -152170553 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 49 0 0 chr6 30244753 30244794 -152170448 + AT_rich Low_complexity Low_complexity 1 41 0 181 372 21 11 chr6 30244821 30244915 -152170327 - MIR3 SINE MIR -99 109 15 21 0 0 0 chr6 30246771 30246792 -152168450 + AT_rich Low_complexity Low_complexity 1 21 0 275 237 169 34 chr6 30246844 30247021 -152168221 + MIR SINE MIR 49 249 -13 635 54 0 0 chr6 30247382 30247456 -152167786 - tRNA-Thr-ACT tRNA tRNA -3 74 1 228 354 0 0 chr6 30248875 30248957 -152166285 - L2 LINE L2 -11 3302 3221 2474 85 0 0 chr6 30249231 30249536 -152165706 + AluSx SINE Alu 1 305 -7 1090 134 32 0 chr6 30249538 30249695 -152165547 - THE1C LTR MaLR -213 162 1 2568 154 22 46 chr6 30249976 30250141 -152165101 + MLT1C LTR MaLR 19 186 -281 2285 78 3 10 chr6 30250141 30250434 -152164808 + AluSq SINE Alu 3 293 -20 2568 154 22 46 chr6 30250434 30250728 -152164514 + MLT1C LTR MaLR 186 467 0 7677 120 29 35 chr6 30252039 30252704 -152162538 + Tigger3b DNA MER2_type 1 668 -2360 2242 103 0 31 chr6 30252704 30253023 -152162219 - AluSx SINE Alu -3 309 1 7677 120 29 35 chr6 30253023 30253322 -152161920 + Tigger3b DNA MER2_type 668 959 -2069 1485 164 12 0 chr6 30253322 30253572 -152161670 - AluJb SINE Alu -59 253 1 7677 120 29 35 chr6 30253572 30253844 -152161398 + Tigger3b DNA MER2_type 959 1231 0 2421 64 10 0 chr6 30253863 30254158 -152161084 + AluY SINE Alu 1 298 -13 21 36 0 0 chr6 30255116 30255144 -152160098 + AT_rich Low_complexity Low_complexity 1 28 0 1739 92 0 0 chr6 30257029 30257256 -152157986 - AluSq SINE Alu -2 311 85 622 56 0 0 chr6 30257412 30257484 -152157758 - tRNA-Ala-GCG tRNA tRNA -3 72 1 22 35 0 0 chr6 30257544 30257573 -152157669 + AT_rich Low_complexity Low_complexity 1 29 0 482 161 117 0 chr6 30258567 30258669 -152156573 + MLT1A2 LTR MaLR 274 372 -2 688 249 76 10 chr6 30259052 30259249 -152155993 + L1MEc LINE L1 44 253 -6143 358 185 0 0 chr6 30259250 30259315 -152155927 + MLT2D LTR ERVL 1 65 -399 959 147 76 76 chr6 30259350 30259426 -152155816 + MLT2D LTR ERVL 53 128 -286 1741 147 47 0 chr6 30259426 30259705 -152155537 + AluSx SINE Alu 1 292 -20 959 147 76 76 chr6 30259705 30259839 -152155403 + MLT2D LTR ERVL 127 263 -151 529 270 0 45 chr6 30260738 30260960 -152154282 - MER20B DNA MER1_type -3 780 569 824 282 82 68 chr6 30261004 30261163 -152154079 - MER20B DNA MER1_type -222 561 406 1959 95 77 0 chr6 30261163 30261436 -152153806 - AluSg SINE Alu -15 295 2 824 282 82 68 chr6 30261436 30261539 -152153703 - MER20B DNA MER1_type -377 406 306 2342 76 0 13 chr6 30261539 30261840 -152153402 + AluSx SINE Alu 1 297 -15 824 282 82 68 chr6 30261840 30262087 -152153155 - MER20B DNA MER1_type -477 306 44 309 347 28 34 chr6 30262114 30262290 -152152952 + MLT1L LTR MaLR 156 330 -285 607 189 213 37 chr6 30262390 30262554 -152152688 - MER41D LTR ERV1 0 557 365 2303 108 3 0 chr6 30262567 30262873 -152152369 + AluSx SINE Alu 1 307 -5 454 286 112 6 chr6 30263220 30263381 -152151861 + MLT1L LTR MaLR 434 611 -4 27 29 0 0 chr6 30263412 30263446 -152151796 + AT_rich Low_complexity Low_complexity 1 34 0 1727 86 86 19 chr6 30263446 30263578 -152151664 - AluSx SINE Alu -26 286 164 2288 95 16 3 chr6 30263578 30263882 -152151360 - AluSq SINE Alu -5 308 1 1727 86 86 19 chr6 30263882 30264016 -152151226 - AluSx SINE Alu -148 164 2 386 279 54 54 chr6 30264023 30264170 -152151072 - L2 LINE L2 -605 2709 2563 * 482 242 32 8 chr6 30264139 30264263 -152150979 + L2 LINE L2 3184 3310 -3 1147 207 76 32 chr6 30264411 30264595 -152150647 + MER101B LTR ERV1 26 146 -328 1978 65 0 4 chr6 30264595 30264843 -152150399 + AluY SINE Alu 62 308 -3 1147 207 76 32 chr6 30264843 30265037 -152150205 + MER101B LTR ERV1 146 330 -144 485 273 13 33 chr6 30265098 30265248 -152149994 + L2 LINE L2 2292 2438 -876 2269 85 16 0 chr6 30265323 30265629 -152149613 - AluY SINE Alu 0 311 1 549 358 118 16 chr6 30265852 30266547 -152148695 - L2 LINE L2 -982 2332 1567 312 226 0 118 chr6 30266598 30266663 -152148579 + MER5A DNA MER1_type 12 62 -127 2200 123 3 0 chr6 30266663 30266971 -152148271 + AluSg SINE Alu 1 309 -1 312 226 0 118 chr6 30266971 30267007 -152148235 + MER5A DNA MER1_type 62 101 -88 220 315 145 21 chr6 30267091 30267326 -152147916 - L2 LINE L2 -1805 1509 1246 273 309 24 0 chr6 30267332 30267416 -152147826 + MIR3 SINE MIR 96 181 -27 2337 170 60 32 chr6 30268039 30268503 -152146739 + MLT1D LTR MaLR 1 477 -28 2192 113 3 3 chr6 30268656 30268967 -152146275 - AluSq SINE Alu -2 311 1 2554 72 3 0 chr6 30268967 30269273 -152145969 - AluSp SINE Alu -6 307 1 630 311 44 20 chr6 30269286 30269537 -152145705 - MIR SINE MIR -4 258 2 419 358 7 7 chr6 30269600 30269748 -152145494 - L2 LINE L2 -2489 825 678 2118 98 10 16 chr6 30269824 30270129 -152145113 - AluSp SINE Alu -10 303 1 869 181 0 0 chr6 30270198 30270325 -152144917 - FLAM_C SINE Alu -6 127 1 1742 171 26 19 chr6 30270334 30270644 -152144598 - AluJb SINE Alu 0 312 1 1969 113 27 14 chr6 30270676 30270968 -152144274 + AluSc SINE Alu 3 298 -11 721 128 0 10 chr6 30271726 30271828 -152143414 - AluSq SINE Alu -84 229 129 814 143 0 0 chr6 30272186 30272312 -152142930 - AluSg/x SINE Alu -44 266 141 683 0 0 0 chr6 30273011 30273083 -152142159 - tRNA-Ala-GCG tRNA tRNA -3 72 1 6497 144 19 29 chr6 30273940 30275175 -152140067 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 30275179 30275202 -152140040 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 30275353 30275670 -152139572 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 30275939 30276063 -152139179 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 30276063 30276114 -152139128 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 30276114 30276277 -152138965 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 30276494 30276587 -152138655 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 30276594 30276935 -152138307 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 30276984 30277009 -152138233 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 30277009 30277307 -152137935 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 30277307 30277377 -152137865 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 30277476 30277512 -152137730 + MLT1F LTR MaLR 507 542 0 6086 120 32 57 chr6 30277753 30278830 -152136412 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 30278971 30278999 -152136243 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 30279128 30279207 -152136035 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 30280180 30280487 -152134755 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 30280831 30280853 -152134389 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 30281766 30282585 -152132657 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 30282587 30283334 -152131908 + HERVK LTR ERVK 1 757 -6486 37069 127 13 13 chr6 30283407 30286557 -152128685 + HERVK LTR ERVK 733 3760 -3657 5262 144 36 42 chr6 30286557 30287532 -152127710 + LTR5 LTR ERVK 1 969 0 37069 127 13 13 chr6 30287532 30290641 -152124601 + HERVK LTR ERVK 3760 6869 -548 1133 143 123 25 chr6 30340699 30340920 -152074322 + AluJb SINE Alu 1 199 -113 201 74 0 0 chr6 30340920 30340947 -152074295 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1839 107 0 26 chr6 30340947 30341219 -152074023 + AluSx SINE Alu 1 265 -47 1133 143 123 25 chr6 30341219 30341240 -152074002 + AluJb SINE Alu 198 268 -44 245 29 0 29 chr6 30341250 30341285 -152073957 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1054 132 48 47 chr6 30341370 30341699 -152073543 + LTR35 LTR ERV1 1 390 -228 4056 181 68 45 chr6 30341833 30342648 -152072594 - MER109 Unknown Unknown -309 2123 1282 1876 116 46 0 chr6 30342648 30342932 -152072310 - AluSx SINE Alu -13 299 3 4056 181 68 45 chr6 30342932 30343038 -152072204 - MER109 Unknown Unknown -1150 1282 1180 735 261 87 39 chr6 30343169 30343448 -152071794 - L1MC4 LINE L1 -198 7844 7539 2146 84 3 43 chr6 30343448 30343770 -152071472 - AluSg SINE Alu -1 309 1 735 261 87 39 chr6 30343770 30343880 -152071362 - L1MC4 LINE L1 -503 7539 7436 391 327 69 32 chr6 30344322 30344688 -152070554 + L1MEd LINE L1 563 953 -5166 2137 103 3 3 chr6 30344688 30344988 -152070254 - AluSx SINE Alu -12 300 1 391 327 69 32 chr6 30344988 30345114 -152070128 + L1MEd LINE L1 953 1073 -5046 828 252 61 33 chr6 30345120 30345431 -152069811 + MLT1H LTR MaLR 1 369 -226 312 220 0 0 chr6 30345536 30345595 -152069647 + MLT1E1 LTR MaLR 593 651 -3 2040 99 0 0 chr6 30346520 30346793 -152068449 + AluSx SINE Alu 9 281 -31 971 264 68 32 chr6 30346829 30347325 -152067917 - L1MEc LINE L1 -2605 3610 3097 216 0 0 0 chr6 30347326 30347350 -152067892 + (T)n Simple_repeat Simple_repeat 1 24 0 617 126 11 0 chr6 30347350 30347445 -152067797 - AluSg1 SINE Alu -212 97 2 975 245 64 30 chr6 30347448 30347917 -152067325 - L1MEc LINE L1 -3105 3110 2626 2008 68 4 0 chr6 30347925 30348190 -152067052 + AluY SINE Alu 4 269 -42 2086 94 3 47 chr6 30348707 30348740 -152066502 - AluSx SINE Alu -3 309 276 257 50 0 25 chr6 30348740 30348780 -152066462 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 2086 94 3 47 chr6 30348780 30349065 -152066177 - AluSx SINE Alu -36 276 5 1939 86 3 83 chr6 30349073 30349397 -152065845 - AluSc SINE Alu 0 300 1 575 214 59 54 chr6 30349414 30349663 -152065579 - L1MEc LINE L1 -3655 2560 2252 266 194 31 10 chr6 30349664 30349762 -152065480 + CT-rich Low_complexity Low_complexity 3 102 0 753 219 0 64 chr6 30349764 30349951 -152065291 - FAM SINE Alu 0 175 1 2505 55 3 3 chr6 30350222 30350531 -152064711 - AluY SINE Alu -2 309 1 253 291 12 12 chr6 30350669 30350755 -152064487 + CT-rich Low_complexity Low_complexity 4 89 0 3219 239 101 40 chr6 30351107 30351823 -152063419 - L1MC4 LINE L1 -106 7702 7031 2491 63 0 0 chr6 30351823 30352126 -152063116 - AluY SINE Alu -7 304 2 3219 239 101 40 chr6 30352126 30352993 -152062249 - L1MC4 LINE L1 -777 7031 6098 423 0 0 0 chr6 30353182 30353229 -152062013 + (GA)n Simple_repeat Simple_repeat 1 47 0 326 288 0 0 chr6 30353356 30353429 -152061813 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 2357 110 0 0 chr6 30354093 30354431 -152060811 - AluY SINE Alu 0 338 1 3671 122 28 4 chr6 30355675 30356218 -152059024 + LTR6A LTR ERV1 9 564 0 60764 135 10 10 chr6 30356220 30357936 -152057306 + HERVS71 LTR ERV1 4 1719 -7259 2585 56 10 0 chr6 30357936 30358241 -152057001 - AluY SINE Alu -3 308 1 60764 135 10 10 chr6 30358241 30365460 -152049782 + HERVS71 LTR ERV1 1719 8937 -41 3672 124 30 4 chr6 30365470 30366012 -152049230 + LTR6A LTR ERV1 9 564 0 2302 106 0 0 chr6 30366726 30367069 -152048173 - AluSx SINE Alu 0 343 1 607 29 0 0 chr6 30367735 30367804 -152047438 - tRNA-Phe-TTC tRNA tRNA -7 69 1 669 138 0 204 chr6 30367905 30368130 -152047112 + AluSg/x SINE Alu 124 302 -10 1156 121 11 11 chr6 30368237 30368419 -152046823 - AluSg/x SINE Alu -7 305 124 524 96 0 14 chr6 30368519 30368592 -152046650 + tRNA-Phe-TTC tRNA tRNA 1 72 -4 2096 108 3 3 chr6 30368790 30369077 -152046165 - AluSx SINE Alu -25 287 1 807 42 42 0 chr6 30369371 30369489 -152045753 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1314 169 7 83 chr6 30369493 30369794 -152045448 - AluJb SINE Alu -34 278 1 736 209 32 102 chr6 30370665 30370770 -152044472 - MER33 DNA MER1_type -2266 319 208 1163 133 9 64 chr6 30370770 30370988 -152044254 - L1PA16 LINE L1 -9 6157 5952 736 209 32 102 chr6 30370988 30371119 -152044123 - MER33 DNA MER1_type -2377 208 69 258 81 0 0 chr6 30371119 30371156 -152044086 + (TA)n Simple_repeat Simple_repeat 1 37 0 2253 109 0 0 chr6 30371156 30371450 -152043792 - AluSg SINE Alu -16 294 1 736 209 32 102 chr6 30371450 30371564 -152043678 - MER33 DNA MER1_type -2514 71 1 2213 104 3 13 chr6 30372334 30372652 -152042590 - AluSq SINE Alu 0 313 1 973 189 6 0 chr6 30373082 30373257 -152041985 - FRAM SINE Alu -3 173 1 561 69 0 0 chr6 30373747 30373819 -152041423 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 21 0 0 0 chr6 30374153 30374174 -152041068 + GC_rich Low_complexity Low_complexity 1 21 0 2303 88 3 0 chr6 30374505 30374799 -152040443 + AluSp SINE Alu 3 297 -16 545 180 14 86 chr6 30375493 30375603 -152039639 + MER5A DNA MER1_type 61 162 -27 2251 82 4 0 chr6 30375603 30375906 -152039336 - AluSg SINE Alu 0 304 1 545 180 14 86 chr6 30375906 30375933 -152039309 + MER5A DNA MER1_type 162 189 0 807 97 24 24 chr6 30376209 30376374 -152038868 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 2208 119 26 0 chr6 30376380 30376683 -152038559 - AluSx SINE Alu -1 311 1 559 237 290 15 chr6 30376885 30377147 -152038095 - L1MDa LINE L1 -1062 5478 5145 1708 127 48 65 chr6 30377213 30377514 -152037728 + THE1C LTR MaLR 19 324 -51 2155 113 0 0 chr6 30377514 30377807 -152037435 + AluSg SINE Alu 3 295 -15 1708 127 48 65 chr6 30377807 30377859 -152037383 + THE1C LTR MaLR 324 375 0 1498 247 57 52 chr6 30377890 30378283 -152036959 - L1MDa LINE L1 -2161 4379 3989 2058 56 108 4 chr6 30378283 30378552 -152036690 - AluY SINE Alu -14 297 1 1498 247 57 52 chr6 30378552 30378610 -152036632 - L1MDa LINE L1 -2551 3989 3933 2324 99 0 0 chr6 30378610 30378904 -152036338 - AluSq SINE Alu -19 294 1 1498 247 57 52 chr6 30378904 30379073 -152036169 - L1MDa LINE L1 -2607 3933 3752 2714 85 193 43 chr6 30379073 30379482 -152035760 + LTR61 LTR ERV1 1 505 -90 2237 109 10 0 chr6 30379482 30379785 -152035457 - AluSx SINE Alu -6 306 1 2714 85 193 43 chr6 30379785 30379892 -152035350 + LTR61 LTR ERV1 505 595 0 1498 247 57 52 chr6 30379892 30379924 -152035318 - L1MDa LINE L1 -2788 3752 3722 332 203 28 40 chr6 30379960 30380137 -152035105 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 1114 112 4 4 chr6 30380524 30380732 -152034510 - AluSq SINE Alu -29 284 2 3216 224 57 56 chr6 30380752 30381658 -152033584 - L1MDa LINE L1 -2807 3733 2829 2184 137 0 0 chr6 30381658 30381965 -152033277 + AluSq SINE Alu 1 307 -6 3216 224 57 56 chr6 30381965 30382379 -152032863 - L1MDa LINE L1 -3711 2829 2417 1515 84 21 0 chr6 30382379 30382570 -152032672 - AluSx SINE Alu -117 195 1 3216 224 57 56 chr6 30382570 30382808 -152032434 - L1MDa LINE L1 -4123 2417 2181 2066 137 0 3 chr6 30382808 30383115 -152032127 - AluSg SINE Alu -2 308 3 3216 224 57 56 chr6 30383115 30383591 -152031651 - L1MDa LINE L1 -4359 2181 1696 2781 160 6 23 chr6 30383862 30384338 -152030904 - MER1A DNA MER1_type 0 529 62 564 96 0 0 chr6 30384393 30384466 -152030776 - tRNA-Lys-AAA tRNA tRNA -3 73 1 5429 125 52 19 chr6 30385210 30385652 -152029590 - L1MA3 LINE L1 0 6305 5879 3604 62 136 62 chr6 30385652 30386220 -152029022 + LTR66 LTR ERVL 1 610 0 5429 125 52 19 chr6 30386220 30386707 -152028535 - L1MA3 LINE L1 -426 5879 5346 450 0 0 0 chr6 30386805 30386855 -152028387 + (CA)n Simple_repeat Simple_repeat 2 51 0 302 200 0 0 chr6 30387496 30387546 -152027696 + MER66A LTR ERV1 287 336 -142 267 93 0 0 chr6 30387547 30387590 -152027652 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1089 163 5 10 chr6 30388530 30388732 -152026510 - L1PA16 LINE L1 0 6166 5966 578 56 0 0 chr6 30389174 30389245 -152025997 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 2595 61 0 6 chr6 30389555 30389868 -152025374 - AluSx SINE Alu 0 312 2 207 0 0 0 chr6 30389870 30389893 -152025349 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2130 98 0 0 chr6 30389895 30390170 -152025072 - AluSx SINE Alu -36 276 2 463 162 60 62 chr6 30390172 30390324 -152024918 + L1MC3 LINE L1 6193 7765 -1 261 221 0 0 chr6 30390564 30390632 -152024610 + GA-rich Low_complexity Low_complexity 3 70 0 2194 69 14 28 chr6 30391233 30391551 -152023691 - AluY SINE Alu 0 314 1 2084 136 3 3 chr6 30391618 30391928 -152023314 + AluSx SINE Alu 3 312 0 402 208 68 25 chr6 30392075 30392177 -152023065 - AluJ/FLAM SINE Alu -221 81 12 1750 177 0 13 chr6 30392177 30392482 -152022760 - AluJo SINE Alu -11 301 1 27 0 0 0 chr6 30392482 30392509 -152022733 + AT_rich Low_complexity Low_complexity 1 27 0 2323 93 0 0 chr6 30392509 30392819 -152022423 + AluSx SINE Alu 1 310 -2 609 146 0 146 chr6 30394208 30394372 -152020870 + FLAM_C SINE Alu 1 140 -3 5662 169 13 31 chr6 30394534 30394728 -152020514 - L1MA10 LINE L1 -8 6326 6130 2517 49 3 10 chr6 30394728 30395034 -152020208 - AluY SINE Alu -7 304 1 5662 169 13 31 chr6 30395034 30395886 -152019356 - L1MA10 LINE L1 -204 6130 5300 330 26 0 0 chr6 30395886 30395925 -152019317 + (TG)n Simple_repeat Simple_repeat 1 39 0 5662 169 13 31 chr6 30395925 30396247 -152018995 - L1MA10 LINE L1 -1034 5300 4974 180 0 0 0 chr6 30396342 30396362 -152018880 + (TG)n Simple_repeat Simple_repeat 2 21 0 497 137 0 0 chr6 30396693 30396766 -152018476 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 1767 58 0 62 chr6 30397061 30397303 -152017939 + AluY SINE Alu 80 306 -5 1987 104 39 0 chr6 30397808 30398088 -152017154 + AluSx SINE Alu 1 291 -21 444 118 10 39 chr6 30399130 30399232 -152016010 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2177 71 58 3 chr6 30401611 30401905 -152013337 - AluSx SINE Alu -2 310 1 297 0 0 0 chr6 30402410 30402443 -152012799 + (T)n Simple_repeat Simple_repeat 1 33 0 524 83 0 0 chr6 30402815 30402887 -152012355 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1070 40 0 0 chr6 30403451 30403577 -152011665 + AluY SINE Alu 157 282 -29 189 0 0 0 chr6 30403577 30403598 -152011644 + (CA)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr6 30403598 30403645 -152011597 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 31 0 0 0 chr6 30404735 30404766 -152010476 + AT_rich Low_complexity Low_complexity 1 31 0 432 192 0 0 chr6 30405051 30405124 -152010118 + tRNA-Phe-TTC tRNA tRNA 1 73 -3 441 287 67 18 chr6 30405154 30405318 -152009924 + MER45B DNA AcHobo 82 253 -787 1123 185 30 17 chr6 30405333 30405565 -152009677 + MER45B DNA AcHobo 805 1039 -1 661 40 0 0 chr6 30406110 30406184 -152009058 - tRNA-Thr-ACT tRNA tRNA -3 74 1 2330 107 0 3 chr6 30406982 30407291 -152007951 - AluSx SINE Alu -4 308 1 5585 196 69 6 chr6 30407300 30407647 -152007595 + Cheshire DNA MER1_type 1080 1404 -1016 312 27 0 0 chr6 30407647 30407684 -152007558 + (TG)n Simple_repeat Simple_repeat 2 38 0 5585 196 69 6 chr6 30407684 30408585 -152006657 + Cheshire DNA MER1_type 1404 2406 -14 832 136 30 77 chr6 30408587 30408756 -152006486 - MLT1A1 LTR MaLR -204 161 1 823 235 30 6 chr6 30408808 30408974 -152006268 + MLT1E LTR MaLR 3 172 -421 207 272 52 0 chr6 30408974 30409110 -152006132 + (TA)n Simple_repeat Simple_repeat 1 143 0 2200 108 24 0 chr6 30409673 30409970 -152005272 - AluSp SINE Alu -9 304 1 236 235 0 0 chr6 30410224 30410275 -152004967 - MER57A LTR ERV1 -52 351 301 439 163 75 0 chr6 30410413 30410493 -152004749 - LTR54 LTR ERV1 -424 86 1 269 208 19 0 chr6 30411140 30411193 -152004049 + MER45 DNA AcHobo 1 54 -899 1995 101 0 4 chr6 30411305 30411583 -152003659 + AluY SINE Alu 2 278 -33 217 0 61 0 chr6 30411583 30411616 -152003626 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1104 131 113 5 chr6 30411901 30412123 -152003119 + L1MA8 LINE L1 5983 6228 -63 28 29 0 0 chr6 30412126 30412161 -152003081 + AT_rich Low_complexity Low_complexity 1 35 0 6497 144 19 29 chr6 30413129 30414364 -152000878 + L1MC1 LINE L1 5101 6321 -12 207 0 0 0 chr6 30414368 30414391 -152000851 + (A)n Simple_repeat Simple_repeat 1 23 0 2467 50 3 31 chr6 30414542 30414859 -152000383 + AluY SINE Alu 1 308 -3 1347 184 76 17 chr6 30415128 30415252 -151999990 + AluJb SINE Alu 1 116 -196 438 20 0 0 chr6 30415252 30415303 -151999939 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1347 184 76 17 chr6 30415303 30415466 -151999776 + AluJb SINE Alu 116 305 -7 337 129 75 54 chr6 30415683 30415776 -151999466 - L1MC1 LINE L1 0 6333 6239 1189 217 53 38 chr6 30415783 30416124 -151999118 - L1M4 LINE L1 -2365 3781 3436 350 250 42 10 chr6 30416173 30416198 -151999044 - L1MC5 LINE L1 -53 7908 7885 2001 131 7 0 chr6 30416198 30416496 -151998746 + AluSx SINE Alu 1 300 -12 350 250 42 10 chr6 30416496 30416566 -151998676 - L1MC5 LINE L1 -76 7885 7810 262 111 0 0 chr6 30416665 30416701 -151998541 + MLT1F1 LTR MaLR 532 567 0 6086 120 32 57 chr6 30416942 30418019 -151997223 - L1MA3 LINE L1 0 6305 5255 21 36 0 0 chr6 30418160 30418188 -151997054 + AT_rich Low_complexity Low_complexity 1 28 0 255 228 51 0 chr6 30418317 30418396 -151996846 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1933 138 18 0 chr6 30419369 30419676 -151995566 + AluSx SINE Alu 1 312 0 22 0 0 0 chr6 30420020 30420042 -151995200 + AT_rich Low_complexity Low_complexity 1 22 0 3588 143 48 98 chr6 30420955 30421774 -151993468 + LTR5 LTR ERVK 190 967 -2 5126 119 17 4 chr6 30421776 30422523 -151992719 + HERVK LTR ERVK 1 757 -6486 37069 140 13 15 chr6 30422596 30425746 -151989496 + HERVK LTR ERVK 733 3887 -3530 5262 144 36 42 chr6 30425746 30426721 -151988521 + LTR5 LTR ERVK 1 969 0 37069 140 13 15 chr6 30426721 30430366 -151984876 + HERVK LTR ERVK 3887 7392 -25 5293 136 57 35 chr6 30430375 30431323 -151983919 + LTR5 LTR ERVK 1 969 0 554 81 0 0 chr6 30431323 30431397 -151983845 - AluJ/FLAM SINE Alu -237 75 2 465 149 0 14 chr6 30431574 30431648 -151983594 - tRNA-Lys-AAA tRNA tRNA -3 73 1 564 15 0 0 chr6 30433397 30433462 -151981780 + (CA)n Simple_repeat Simple_repeat 1 65 0 2566 59 0 3 chr6 30433825 30434132 -151981110 - AluY SINE Alu -5 306 1 529 125 0 0 chr6 30434296 30434368 -151980874 - tRNA-Ala-GCG tRNA tRNA -3 72 1 246 240 0 0 chr6 30435531 30435581 -151979661 - tRNA-Phe-TTC tRNA tRNA -26 50 1 2011 145 3 0 chr6 30436520 30436823 -151978419 + AluSx SINE Alu 1 304 -8 411 21 0 0 chr6 30437318 30437366 -151977876 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 2285 101 0 3 chr6 30437368 30437666 -151977576 + AluSg SINE Alu 2 298 -12 268 204 0 0 chr6 30437845 30437894 -151977348 + MER5B DNA MER1_type 127 175 -3 2204 108 3 0 chr6 30438383 30438680 -151976562 + AluSp SINE Alu 1 298 -15 182 213 43 21 chr6 30439648 30439695 -151975547 - MER5A DNA MER1_type -77 112 65 2209 141 0 0 chr6 30439976 30440288 -151974954 - AluSx SINE Alu 0 312 1 1732 141 8 0 chr6 30440768 30441016 -151974226 - AluSx SINE Alu -23 289 40 411 149 0 0 chr6 30441359 30441433 -151973809 + (A)n Simple_repeat Simple_repeat 1 74 0 2654 129 41 10 chr6 30441491 30441909 -151973333 - MER65A LTR ERV1 0 445 15 217 246 15 15 chr6 30442453 30442518 -151972724 + CT-rich Low_complexity Low_complexity 2 66 0 222 179 0 0 chr6 30442539 30442595 -151972647 + T-rich Low_complexity Low_complexity 1 56 0 1977 189 68 16 chr6 30442860 30443299 -151971943 + MLT1C LTR MaLR 6 467 0 1619 266 67 32 chr6 30443350 30443884 -151971358 - ERVL LTR ERVL -364 5400 4848 241 286 76 25 chr6 30444224 30444343 -151970899 + L1ME LINE L1 785 909 -5621 2157 72 0 82 chr6 30444466 30444785 -151970457 - AluYa5 SINE Alu -18 293 1 960 242 117 41 chr6 30444809 30445083 -151970159 + L1ME LINE L1 999 1251 -5289 1452 184 19 42 chr6 30445083 30445393 -151969849 + AluJo SINE Alu 4 306 -6 960 242 117 41 chr6 30445393 30445770 -151969472 + L1ME LINE L1 1251 1714 -4826 890 145 8 0 chr6 30445789 30445920 -151969322 + AluJ SINE Alu 2 133 -169 533 28 0 28 chr6 30445923 30445995 -151969247 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 830 200 0 57 chr6 30446000 30446175 -151969067 + AluJ SINE Alu 134 298 -14 888 264 136 45 chr6 30446176 30446913 -151968329 + L1ME LINE L1 1732 2534 -4006 1048 123 62 47 chr6 30446917 30447128 -151968114 + L1MC/D LINE L1 5254 5467 -775 1992 87 3 61 chr6 30447331 30447642 -151967600 + AluSg SINE Alu 18 310 0 180 258 0 32 chr6 30448119 30448181 -151967061 - MER5A DNA MER1_type -26 163 104 515 125 0 0 chr6 30448953 30449025 -151966217 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 4470 155 50 11 chr6 30449219 30450006 -151965236 + Tigger7 DNA MER2_type 25 841 -1646 2028 123 17 7 chr6 30450125 30450425 -151964817 + AluSx SINE Alu 1 303 -9 811 237 0 0 chr6 30450947 30451099 -151964143 + AluSg/x SINE Alu 132 283 -27 343 168 35 0 chr6 30451099 30451242 -151964000 + (TA)n Simple_repeat Simple_repeat 1 148 0 1623 201 7 0 chr6 30451486 30451789 -151963453 - AluJo SINE Alu -7 305 1 3653 172 40 37 chr6 30452169 30452878 -151962364 + MER50 LTR ERV1 1 711 -23 1699 118 0 12 chr6 30452963 30453209 -151962033 + AluSg SINE Alu 60 302 -8 29 0 0 0 chr6 30453933 30453962 -151961280 + AT_rich Low_complexity Low_complexity 1 29 0 522 111 0 0 chr6 30454114 30454186 -151961056 - tRNA-Ala-GCG tRNA tRNA -3 72 1 451 245 107 43 chr6 30454487 30454740 -151960502 + L1MC4a LINE L1 6089 6357 -1451 226 274 0 0 chr6 30454936 30454987 -151960255 - tRNA-Lys-AAA tRNA tRNA -6 70 20 232 214 18 0 chr6 30455061 30455117 -151960125 + (TA)n Simple_repeat Simple_repeat 1 57 0 2008 111 11 4 chr6 30455129 30455409 -151959833 - AluSx SINE Alu -17 295 14 2489 65 7 3 chr6 30456036 30456343 -151958899 + AluSp SINE Alu 1 308 -5 259 289 22 11 chr6 30457095 30457185 -151958057 - MIR SINE MIR -150 112 22 1980 141 0 3 chr6 30457405 30457702 -151957540 - AluSx SINE Alu -12 300 5 2686 42 0 0 chr6 30457720 30458030 -151957212 - AluY SINE Alu 0 311 2 931 141 25 6 chr6 30459122 30459285 -151955957 + Tigger7 DNA MER2_type 347 512 -1975 * 1237 119 115 33 chr6 30459258 30459501 -151955741 + Tigger7 DNA MER2_type 388 650 -1837 298 253 42 11 chr6 30459783 30459878 -151955364 + L1MD3 LINE L1 7890 7987 -8 1910 121 35 0 chr6 30459906 30460188 -151955054 + AluSg SINE Alu 1 292 -18 2392 92 3 0 chr6 30460194 30460498 -151954744 + AluSp SINE Alu 1 305 -8 259 105 35 0 chr6 30460794 30460851 -151954391 + (TA)n Simple_repeat Simple_repeat 2 60 0 2193 133 117 8 chr6 30560863 30561231 -151854011 + MSTA LTR MaLR 21 428 0 499 270 0 0 chr6 30563332 30563443 -151851799 - MER81 DNA DNA -1 113 3 2088 167 27 3 chr6 30563628 30563993 -151851249 + MLT1B LTR MaLR 1 374 -16 1423 230 18 0 chr6 30565121 30565464 -151849778 - L1MB5 LINE L1 -9 6165 5817 2341 103 3 0 chr6 30566455 30566755 -151848487 - AluSp SINE Alu -12 301 1 4091 240 66 12 chr6 30567356 30568703 -151846539 - L1M4 LINE L1 -2507 3639 2220 3389 254 109 21 chr6 30568717 30568865 -151846377 + L1M4c LINE L1 906 1040 -5344 2845 19 0 0 chr6 30568865 30569176 -151846066 + AluYa5 SINE Alu 1 311 0 3389 254 109 21 chr6 30569176 30570442 -151844800 + L1M4c LINE L1 1040 2444 -3940 1333 135 4 58 chr6 30570434 30570694 -151844548 + L1MA5 LINE L1 5814 6059 -241 * 2834 130 2 14 chr6 30570691 30571115 -151844127 + L1P3 LINE L1 1 419 -6042 1044 197 19 5 chr6 30571128 30571336 -151843906 + MER20 DNA MER1_type 1 211 -8 3842 264 138 26 chr6 30571363 30572050 -151843192 - L2 LINE L2 -537 2777 2168 1721 176 90 9 chr6 30572050 30572396 -151842846 - MLT1A2 LTR MaLR 0 374 1 3842 264 138 26 chr6 30572396 30573333 -151841909 - L2 LINE L2 -1146 2168 971 461 256 63 19 chr6 30573350 30573557 -151841685 - L2 LINE L2 -2571 743 528 253 279 0 0 chr6 30573612 30573680 -151841562 - MIR SINE MIR -110 152 85 752 188 188 0 chr6 30575214 30575400 -151839842 - MIR SINE MIR -27 235 15 363 306 35 21 chr6 30575777 30575921 -151839321 - MIR3 SINE MIR -32 176 31 1104 235 35 53 chr6 30576076 30576395 -151838847 - MER93a LTR ERV1 0 402 90 231 402 9 0 chr6 30576512 30576624 -151838618 + L3 LINE CR1 988 1100 -477 246 288 0 0 chr6 30578406 30578472 -151836770 + GA-rich Low_complexity Low_complexity 1 66 0 316 209 99 11 chr6 30580058 30580149 -151835093 + MARNA DNA Mariner 154 252 -334 5227 173 20 20 chr6 30580159 30580246 -151834996 + MER49 LTR ERV1 10 96 -827 2013 152 0 0 chr6 30580246 30580548 -151834694 + AluSx SINE Alu 1 302 -10 5227 173 20 20 chr6 30580548 30581374 -151833868 + MER49 LTR ERV1 95 923 0 6279 62 5 0 chr6 30581786 30582562 -151832680 + LTR17 LTR ERV1 1 780 0 218 237 17 0 chr6 30584044 30584103 -151831139 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2032 172 9 0 chr6 30584198 30584547 -151830695 - MER47A DNA MER2_type 0 366 15 2311 192 24 2 chr6 30585103 30585520 -151829722 - MSTB LTR MaLR 0 426 1 4485 116 8 0 chr6 30585556 30586186 -151829056 + MER41B LTR ERV1 1 635 0 310 269 141 39 chr6 30586537 30586693 -151828549 + L1ME3A LINE L1 5725 5896 -274 3396 142 11 9 chr6 30586704 30587247 -151827995 - LTR10A LTR ERV1 -65 544 1 201 208 0 21 chr6 30587695 30587743 -151827499 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 21 0 0 0 chr6 30587774 30587795 -151827447 + AT_rich Low_complexity Low_complexity 1 21 0 306 253 62 80 chr6 30587795 30587869 -151827373 + L1ME LINE L1 5592 5516 -605 1861 119 50 4 chr6 30587869 30588024 -151827218 - AluSx SINE Alu -21 291 116 233 29 0 29 chr6 30588024 30588059 -151827183 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1861 119 50 4 chr6 30588059 30588181 -151827061 - AluSx SINE Alu -196 116 1 306 253 62 80 chr6 30588181 30588318 -151826924 + L1ME LINE L1 5515 5653 -468 359 274 66 44 chr6 30589355 30589691 -151825551 + L1ME LINE L1 1383 1534 -4889 3656 133 111 32 chr6 30589691 30590191 -151825051 + Tigger2 DNA MER2_type 3 573 -2145 2019 116 20 17 chr6 30590191 30590492 -151824750 - AluSx SINE Alu -8 304 3 3656 133 111 32 chr6 30590492 30590678 -151824564 + Tigger2 DNA MER2_type 573 743 -1975 1662 151 0 4 chr6 30590744 30591003 -151824239 + Tigger2 DNA MER2_type 2461 2718 0 1613 251 52 12 chr6 30591004 30591502 -151823740 + L1MC4a LINE L1 6706 7223 -585 2044 199 79 49 chr6 30591517 30591927 -151823315 + L1ME2 LINE L1 5269 5665 -499 1053 83 0 0 chr6 30591927 30592072 -151823170 + (TTC)n Simple_repeat Simple_repeat 2 146 0 1734 129 8 8 chr6 30592078 30592334 -151822908 - AluJb SINE Alu -52 260 5 2044 199 79 49 chr6 30592334 30592525 -151822717 + L1ME2 LINE L1 5669 5895 -269 2393 95 0 7 chr6 30592532 30592838 -151822404 + AluSc SINE Alu 1 304 -5 241 266 0 0 chr6 30593295 30593359 -151821883 + L2 LINE L2 3208 3271 -1 207 0 0 0 chr6 30593766 30593789 -151821453 + (TG)n Simple_repeat Simple_repeat 2 24 0 2529 78 0 0 chr6 30593919 30594227 -151821015 + AluSg SINE Alu 1 308 -2 208 312 92 9 chr6 30595334 30595432 -151819810 + MIR3 SINE MIR 89 198 -10 261 0 0 0 chr6 30595432 30595461 -151819781 + (CA)n Simple_repeat Simple_repeat 2 30 0 2494 185 43 50 chr6 30595490 30595581 -151819661 + Tigger7 DNA MER2_type 2 92 -2495 2121 122 0 14 chr6 30595581 30595876 -151819366 + AluSx SINE Alu 1 291 -21 2494 185 43 50 chr6 30595876 30596463 -151818779 + Tigger7 DNA MER2_type 92 682 -1905 1658 126 24 4 chr6 30596463 30596709 -151818533 + AluSx SINE Alu 51 301 -11 2494 185 43 50 chr6 30596709 30596761 -151818481 + Tigger7 DNA MER2_type 682 2587 0 214 151 57 0 chr6 30597121 30597174 -151818068 + CT-rich Low_complexity Low_complexity 5 60 0 2155 75 21 0 chr6 30597271 30597581 -151817661 + AluSp SINE Alu 1 316 0 25 31 0 0 chr6 30598810 30598842 -151816400 + GC_rich Low_complexity Low_complexity 1 32 0 2462 88 0 0 chr6 30599067 30599372 -151815870 + AluSq SINE Alu 3 307 -6 1272 133 6 0 chr6 30599430 30599611 -151815631 + AluSx SINE Alu 1 182 -130 1654 199 0 10 chr6 30599682 30599989 -151815253 + AluJo SINE Alu 1 304 -8 1835 90 110 41 chr6 30600040 30600330 -151814912 - AluSg SINE Alu 0 310 1 1164 53 20 0 chr6 30600355 30600507 -151814735 - L1PA4 LINE L1 0 6155 6001 2467 85 3 0 chr6 30600552 30600859 -151814383 - AluSp SINE Alu -1 312 5 2309 111 0 3 chr6 30600923 30601230 -151814012 - AluSx SINE Alu -6 306 1 1177 261 65 84 chr6 30601402 30601924 -151813318 + HERVL40 LTR ERVL 460 971 -4559 992 234 109 13 chr6 30653216 30653559 -151761683 + LTR43 LTR ERV1 176 459 -53 26 30 0 0 chr6 30654372 30654405 -151760837 + AT_rich Low_complexity Low_complexity 1 33 0 2911 314 65 23 chr6 30655281 30657311 -151757931 + ERVL LTR ERVL 873 3043 -1953 612 316 42 0 chr6 30657400 30657707 -151757535 + ERVL LTR ERVL 3201 3520 -2244 * 1382 336 40 46 chr6 30657705 30658924 -151756318 + ERVL LTR ERVL 3688 5260 -504 474 334 83 11 chr6 30658932 30659306 -151755936 + LTR16B LTR ERVL 62 462 -2 441 167 0 0 chr6 30659418 30659496 -151755746 + MLT1F LTR MaLR 463 540 -2 252 116 23 0 chr6 30659846 30659889 -151755353 - MADE1 DNA Mariner -2 78 35 2019 210 80 15 chr6 30660916 30661444 -151753798 + MLT1F1 LTR MaLR 6 567 0 1635 186 0 11 chr6 30661520 30661805 -151753437 - AluJb SINE Alu -22 290 9 23 0 0 0 chr6 30661816 30661839 -151753403 + AT_rich Low_complexity Low_complexity 1 23 0 1968 205 80 50 chr6 30662021 30662514 -151752728 + MLT1E3 LTR MaLR 43 557 -67 1184 229 19 52 chr6 30662514 30662824 -151752418 + AluJo SINE Alu 1 300 -2 1968 205 80 50 chr6 30662824 30662895 -151752347 + MLT1E3 LTR MaLR 557 624 0 231 319 56 0 chr6 30663130 30663202 -151752040 - L2 LINE L2 -553 2761 2686 2475 47 30 0 chr6 30663906 30664204 -151751038 + AluY SINE Alu 1 307 -4 189 107 0 0 chr6 30664256 30664284 -151750958 + (A)n Simple_repeat Simple_repeat 1 28 0 198 171 0 0 chr6 30664329 30664370 -151750872 + GA-rich Low_complexity Low_complexity 2 42 0 1245 67 0 0 chr6 30664370 30664534 -151750708 + (GAA)n Simple_repeat Simple_repeat 2 165 0 216 0 0 0 chr6 30664780 30664804 -151750438 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 27 49 0 0 chr6 30668109 30668150 -151747092 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr6 30668187 30668207 -151747035 + (TG)n Simple_repeat Simple_repeat 1 20 0 589 315 99 32 chr6 30668795 30669198 -151746044 - L1MC5 LINE L1 -178 7783 7354 814 203 28 46 chr6 30669616 30669833 -151745409 + MER20 DNA MER1_type 7 219 0 26 50 0 0 chr6 30670833 30670873 -151744369 + AT_rich Low_complexity Low_complexity 1 40 0 3306 197 35 16 chr6 30671012 30671535 -151743707 + L1MB3 LINE L1 4903 5414 -769 3306 183 41 1 chr6 30671535 30672192 -151743050 + L1MB3 LINE L1 5493 6175 -8 3306 197 35 16 chr6 30672192 30672234 -151743008 + L1MB3 LINE L1 5414 6175 -8 479 284 108 42 chr6 30672234 30672811 -151742431 + L2 LINE L2 2564 3178 -135 2283 177 102 14 chr6 30672811 30672838 -151742404 - MLT2B3 LTR ERVL -8 546 523 380 20 0 20 chr6 30672838 30672888 -151742354 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2283 177 102 14 chr6 30672888 30673362 -151741880 - MLT2B3 LTR ERVL -31 523 1 268 297 126 0 chr6 30673370 30673481 -151741761 + L2 LINE L2 3189 3313 0 1706 193 0 13 chr6 30673575 30673875 -151741367 - AluJb SINE Alu -16 296 1 2043 114 3 10 chr6 30674063 30674353 -151740889 - AluSx SINE Alu -24 288 1 305 291 34 26 chr6 30674380 30674497 -151740745 + L1ME4a LINE L1 5839 5956 -165 2050 158 0 3 chr6 30674512 30674822 -151740420 + AluSx SINE Alu 1 309 -3 995 161 0 0 chr6 30675091 30675234 -151740008 + FAM SINE Alu 14 156 -29 26 50 0 0 chr6 30675466 30675506 -151739736 + AT_rich Low_complexity Low_complexity 1 40 0 1827 197 23 32 chr6 30676247 30676683 -151738559 - L1MB5 LINE L1 0 6174 5743 240 86 0 0 chr6 30676788 30676823 -151738419 + (CA)n Simple_repeat Simple_repeat 1 35 0 369 307 9 35 chr6 30676883 30676997 -151738245 + L1MC4 LINE L1 6595 6705 -1337 * 373 250 10 21 chr6 30676915 30677011 -151738231 - L1MC4 LINE L1 -1339 6703 6609 2288 221 31 23 chr6 30677011 30677664 -151737578 - L1M4c LINE L1 -4730 1654 997 618 241 55 36 chr6 30678113 30678333 -151736909 - L1ME3A LINE L1 -15 6155 5932 500 265 93 48 chr6 30678358 30678606 -151736636 - L1ME3A LINE L1 -325 5845 5586 627 228 57 76 chr6 30678625 30678994 -151736248 + L1MC5 LINE L1 7091 7452 -509 1734 190 111 11 chr6 30680627 30681069 -151734173 + L1MB2 LINE L1 5685 6170 -1 215 280 80 30 chr6 30681197 30681297 -151733945 + MER5A DNA MER1_type 22 126 -63 754 294 139 20 chr6 30681322 30681957 -151733285 + HAL1 LINE L1 1798 2507 0 498 288 141 0 chr6 30683170 30683340 -151731902 - MIR SINE MIR -39 223 30 1743 198 33 16 chr6 30688022 30688601 -151726641 + L1M3 LINE L1 4899 5490 -693 387 0 0 0 chr6 30688601 30688644 -151726598 + (CA)n Simple_repeat Simple_repeat 2 44 0 1743 198 33 16 chr6 30688644 30688773 -151726469 + L1M3 LINE L1 5490 5615 -568 2165 130 3 0 chr6 30688773 30689073 -151726169 + AluY SINE Alu 1 301 -10 188 35 35 0 chr6 30690243 30690272 -151724970 + (GGAGA)n Simple_repeat Simple_repeat 2 31 0 813 59 0 0 chr6 30691983 30692084 -151723158 + HY3 scRNA scRNA 1 101 0 296 256 13 0 chr6 30692091 30692169 -151723073 + L1MB7 LINE L1 6048 6126 -58 248 246 0 0 chr6 30692815 30692872 -151722370 + L1MB7 LINE L1 6111 6167 -17 720 206 34 17 chr6 30692957 30693132 -151722110 + MER5B DNA MER1_type 1 178 0 189 0 0 0 chr6 30693199 30693220 -151722022 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 707 235 13 20 chr6 30693220 30693369 -151721873 - FRAM SINE Alu -18 148 1 225 268 0 18 chr6 30695001 30695057 -151720185 + GA-rich Low_complexity Low_complexity 1 55 0 409 272 0 75 chr6 30695322 30695469 -151719773 - L1ME1 LINE L1 -4 6162 6027 2341 33 15 105 chr6 30695667 30695999 -151719243 - AluY SINE Alu -9 302 1 2482 78 0 3 chr6 30695999 30696307 -151718935 - AluSq SINE Alu -2 311 5 818 191 34 28 chr6 30696406 30696584 -151718658 + FRAM SINE Alu 1 176 0 354 129 0 0 chr6 30697807 30697869 -151717373 + (TG)n Simple_repeat Simple_repeat 1 62 0 270 320 108 46 chr6 30698897 30699269 -151715973 + L2 LINE L2 2499 2893 -421 660 211 0 8 chr6 30701597 30701720 -151713522 + FLAM_C SINE Alu 3 124 -19 869 327 30 16 chr6 30701837 30702265 -151712977 - LTR33 LTR ERVL -65 456 23 2276 124 0 0 chr6 30702379 30702677 -151712565 + AluSx SINE Alu 1 298 -14 1639 176 108 3 chr6 30705559 30705900 -151709342 + Tigger1 DNA MER2_type 2042 2418 0 1531 267 104 16 chr6 30707120 30707742 -151707500 + L2 LINE L2 18 694 -2620 1806 232 114 14 chr6 30707749 30708320 -151706922 + MLT1E2 LTR MaLR 1 626 0 416 265 90 0 chr6 30708321 30708510 -151706732 + L2 LINE L2 698 903 -2411 1845 292 57 23 chr6 30708619 30709359 -151705883 + L2 LINE L2 892 1656 -1658 880 318 81 11 chr6 30709359 30709793 -151705449 + LTR16B LTR ERVL 1 464 0 199 250 73 0 chr6 30709865 30709933 -151705309 - L2 LINE L2 -184 3088 3016 3044 324 51 23 chr6 30710478 30712576 -151702666 + HERV16 LTR ERVL 853 3096 -1900 670 378 56 26 chr6 30713045 30714116 -151701126 + HERV16 LTR ERVL 4103 5205 -280 720 298 52 22 chr6 30714137 30714503 -151700739 + LTR16B LTR ERVL 62 438 -26 448 162 0 0 chr6 30714630 30714704 -151700538 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 30714814 30714909 -151700333 + T-rich Low_complexity Low_complexity 2 97 0 222 184 40 13 chr6 30714910 30714986 -151700256 + CT-rich Low_complexity Low_complexity 1 78 0 2198 82 10 13 chr6 30715159 30715462 -151699780 + AluY SINE Alu 1 302 -9 519 299 143 23 chr6 30715548 30715939 -151699303 + L1ME3A LINE L1 5528 5965 -205 394 157 0 0 chr6 30716831 30716901 -151698341 - MER41B LTR ERV1 -86 549 480 6422 88 18 3 chr6 30717244 30718758 -151696484 + L1PA10 LINE L1 4619 6168 0 1942 234 91 19 chr6 30718842 30718935 -151696307 + MLT1F1 LTR MaLR 15 100 -467 2065 139 34 47 chr6 30718935 30719315 -151695927 + THE1C LTR MaLR 1 375 0 1942 234 91 19 chr6 30719315 30719737 -151695505 + MLT1F1 LTR MaLR 100 567 0 1215 216 3 21 chr6 30719810 30720101 -151695141 - AluJb SINE Alu -25 287 2 1665 238 68 55 chr6 30720265 30720799 -151694443 + MLT1E3 LTR MaLR 3 547 -77 1223 232 38 41 chr6 30720799 30721092 -151694150 + AluJo SINE Alu 1 292 -10 1665 238 68 55 chr6 30721092 30721161 -151694081 + MLT1E3 LTR MaLR 547 614 -10 42058 57 14 1 chr6 30721339 30727386 -151687856 + L1PA6 LINE L1 22 6148 -6 338 93 19 0 chr6 30728074 30728128 -151687114 - MER41A LTR ERV1 -88 466 412 6075 100 18 7 chr6 30728496 30730029 -151685213 + L1PA10 LINE L1 4624 6166 -2 2034 243 44 24 chr6 30730107 30730206 -151685036 + MLT1F1 LTR MaLR 6 102 -465 2199 149 5 24 chr6 30730206 30730588 -151684654 + THE1C LTR MaLR 1 375 0 2034 243 44 24 chr6 30730588 30731039 -151684203 + MLT1F1 LTR MaLR 102 567 0 1485 179 3 14 chr6 30731091 30731405 -151683837 - AluJb SINE Alu 0 311 1 1910 242 88 21 chr6 30731578 30732103 -151683139 + MLT1E3 LTR MaLR 14 573 -51 205 288 163 0 chr6 30732333 30732413 -151682829 - L2 LINE L2 -554 2760 2668 218 137 0 39 chr6 30734423 30734474 -151680768 + (CGGGGG)n Simple_repeat Simple_repeat 5 53 0 439 323 71 42 chr6 30734656 30735244 -151679998 + HERVL LTR ERVL 4335 4939 -715 888 304 39 11 chr6 30735500 30735881 -151679361 + LTR16B LTR ERVL 69 460 -4 383 205 0 0 chr6 30735993 30736071 -151679171 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 30736211 30736243 -151678999 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 345 331 116 3 chr6 30736499 30736783 -151678459 + L1ME3A LINE L1 5554 5869 -301 243 0 0 0 chr6 30737049 30737076 -151678166 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2056 117 0 0 chr6 30737078 30737361 -151677881 - AluSq SINE Alu -30 283 1 2093 234 51 22 chr6 30738466 30739012 -151676230 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 30739090 30739112 -151676130 + AT_rich Low_complexity Low_complexity 1 22 0 2222 246 68 19 chr6 30739211 30739804 -151675438 + MLT1E3 LTR MaLR 1 622 -2 456 264 16 8 chr6 30739963 30740088 -151675154 - L2 LINE L2 0 3313 3188 308 324 78 28 chr6 30740096 30740275 -151674967 - L2 LINE L2 -549 2765 2578 2223 49 19 26 chr6 30740517 30740824 -151674418 + AluY SINE Alu 1 305 -6 1536 175 0 32 chr6 30740894 30741209 -151674033 + AluJo SINE Alu 1 305 -7 2076 167 36 8 chr6 30744088 30744448 -151670794 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 30744477 30744505 -151670737 + AT_rich Low_complexity Low_complexity 1 28 0 448 133 0 0 chr6 30745351 30745428 -151669814 + MSTA LTR MaLR 291 428 0 2806 168 8 0 chr6 30745428 30745903 -151669339 + MSTB1-int LTR MaLR 1 479 -1172 2230 242 33 28 chr6 30745912 30746483 -151668759 + MSTB1-int LTR MaLR 1078 1651 0 1840 206 66 7 chr6 30746483 30746891 -151668351 + MSTB1 LTR MaLR 1 432 0 528 275 75 12 chr6 30746891 30747051 -151668191 - MER21B LTR ERV1 -675 188 19 3700 258 53 42 chr6 30747157 30748062 -151667180 - MER21B-int LTR ERV1 -58 4133 3209 2170 109 3 0 chr6 30748062 30748364 -151666878 - AluSx SINE Alu -9 303 1 3700 258 53 42 chr6 30748364 30748710 -151666532 - MER21B-int LTR ERV1 -982 3209 2868 4722 245 118 26 chr6 30748711 30750632 -151664610 + L1M4 LINE L1 3251 5348 -798 566 263 17 6 chr6 30750613 30750788 -151664454 + L1MC/D LINE L1 4842 5018 -1128 * 600 177 0 0 chr6 30750815 30750911 -151664331 + FLAM_A SINE Alu 1 96 -46 1986 209 75 24 chr6 30750924 30751652 -151663590 + L1MC/D LINE L1 4992 5765 -594 896 233 184 4 chr6 30751658 30752018 -151663224 - Charlie1 DNA MER1_type -994 1767 38 602 269 9 50 chr6 30752223 30752442 -151662800 + L1PB4 LINE L1 5946 6155 -1 261 151 0 0 chr6 30752496 30752549 -151662693 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 30753686 30753732 -151661510 + AT_rich Low_complexity Low_complexity 1 46 0 443 290 131 11 chr6 30753732 30753915 -151661327 - MIR SINE MIR -39 223 19 1538 346 33 32 chr6 30757265 30758332 -151656910 + HERVL LTR ERVL 2310 3096 -1900 260 266 38 0 chr6 30758348 30758427 -151656815 + HERVL LTR ERVL 3443 3524 -2240 * 1123 323 58 35 chr6 30758426 30759327 -151655915 + HERVL LTR ERVL 3693 4917 -737 737 304 49 23 chr6 30759641 30760029 -151655213 + LTR16B LTR ERVL 62 459 -5 361 178 14 0 chr6 30760147 30760220 -151655022 + MLT1F1 LTR MaLR 491 564 -3 289 214 28 39 chr6 30760364 30760542 -151654700 + CT-rich Low_complexity Low_complexity 1 176 0 831 115 0 0 chr6 30760817 30760930 -151654312 + AluSx SINE Alu 1 113 -199 502 164 135 10 chr6 30760939 30761043 -151654199 - LTR3b LTR ERVK -5 432 316 * 1062 53 8 0 chr6 30761042 30761174 -151654068 - LTR3b LTR ERVK -365 135 3 1258 113 6 0 chr6 30761175 30761390 -151653852 + AluSx SINE Alu 107 322 0 408 283 143 31 chr6 30761390 30761683 -151653559 + L1ME3A LINE L1 5547 5872 -298 517 108 0 0 chr6 30761830 30761913 -151653329 + L1 LINE L1 4762 4844 -1302 292 67 100 17 chr6 30762885 30762945 -151652297 - MER41A LTR ERV1 -88 466 402 6353 94 9 9 chr6 30763299 30764825 -151650417 + L1PA10 LINE L1 4619 6144 -24 252 0 0 0 chr6 30764825 30764853 -151650389 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6353 94 9 9 chr6 30764853 30764879 -151650363 + L1PA10 LINE L1 6143 6168 0 401 262 39 0 chr6 30764936 30765035 -151650207 + MLT1F1 LTR MaLR 6 108 -459 576 185 31 62 chr6 30765035 30765165 -151650077 + THE1C LTR MaLR 1 126 -249 1793 92 16 0 chr6 30765183 30765433 -151649809 - L1PA10 LINE L1 -136 6032 5779 1361 123 5 19 chr6 30765433 30765644 -151649598 + THE1C LTR MaLR 168 375 0 1936 214 42 20 chr6 30765645 30766098 -151649144 + MLT1F1 LTR MaLR 105 567 0 1562 171 14 11 chr6 30766170 30766456 -151648786 - AluJb SINE Alu -25 287 1 2097 211 80 66 chr6 30766629 30767152 -151648090 + MLT1E3 LTR MaLR 14 548 -76 1234 214 24 14 chr6 30767152 30767441 -151647801 + AluJo SINE Alu 1 292 -20 2097 211 80 66 chr6 30767441 30767520 -151647722 + MLT1E3 LTR MaLR 548 624 0 227 278 206 22 chr6 30767748 30767928 -151647314 - L2 LINE L2 -549 2765 2553 23 68 0 0 chr6 30769293 30769337 -151645905 + GC_rich Low_complexity Low_complexity 1 44 0 2101 112 23 3 chr6 30772775 30773078 -151642164 - AluSc SINE Alu 0 309 1 215 330 70 17 chr6 30773542 30773657 -151641585 - L2 LINE L2 -2 3311 3191 929 120 44 85 chr6 30773660 30773892 -151641350 - MER30B DNA MER1_type 0 230 1 1249 296 108 9 chr6 30773939 30774643 -151640599 - L2 LINE L2 -166 3147 2381 395 266 92 20 chr6 30774854 30775126 -151640116 + L1MEc LINE L1 2028 2297 -3918 213 39 0 0 chr6 30775126 30775152 -151640090 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 395 266 92 20 chr6 30775152 30775249 -151639993 + L1MEc LINE L1 2297 2386 -3829 850 213 38 0 chr6 30775330 30775490 -151639752 - FRAM SINE Alu -12 164 1 490 210 179 31 chr6 30776002 30776164 -151639078 + MER20 DNA MER1_type 32 217 -2 328 267 180 16 chr6 30776170 30776304 -151638938 - MIR SINE MIR -59 149 14 1581 183 48 102 chr6 30777795 30778102 -151637140 + L1P5 LINE L1 4904 5226 -925 2368 93 0 0 chr6 30778102 30778414 -151636828 + AluSx SINE Alu 1 312 0 1581 183 48 102 chr6 30778414 30778654 -151636588 + L1P5 LINE L1 5226 5420 -731 3001 182 43 19 chr6 30778654 30779325 -151635917 + L1MB4 LINE L1 5493 6179 -1 1581 183 48 102 chr6 30779325 30779362 -151635880 + L1P5 LINE L1 5420 5457 -694 480 302 94 38 chr6 30779362 30779940 -151635302 + L2 LINE L2 2569 3181 -132 1659 219 135 9 chr6 30779940 30779977 -151635265 - MLT2B3 LTR ERVL -3 551 520 716 40 56 0 chr6 30779977 30780102 -151635140 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 1659 219 135 9 chr6 30780102 30780349 -151634893 - MLT2B3 LTR ERVL -34 520 305 300 83 0 0 chr6 30780349 30780397 -151634845 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1659 219 135 9 chr6 30780397 30780532 -151634710 - MLT2B3 LTR ERVL -249 305 78 1454 169 47 7 chr6 30780565 30780843 -151634399 - AluJb SINE Alu -19 293 5 305 309 134 56 chr6 30780853 30781094 -151634148 + L1ME4a LINE L1 5636 5910 -211 1599 141 8 8 chr6 30781094 30781350 -151633892 + AluSx SINE Alu 35 290 -22 305 309 134 56 chr6 30781350 30781428 -151633814 + L1ME4a LINE L1 5910 5980 -141 797 204 72 0 chr6 30781700 30781852 -151633390 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 30782077 30782131 -151633111 + (TA)n Simple_repeat Simple_repeat 1 58 0 1792 211 19 24 chr6 30782884 30783310 -151631932 - L1MB5 LINE L1 -8 6166 5743 203 161 0 0 chr6 30783351 30783382 -151631860 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 3719 226 69 75 chr6 30783406 30784940 -151630302 - L1M4c LINE L1 -4696 1950 376 1877 176 0 0 chr6 30784940 30785252 -151629990 - AluJb SINE Alu 0 312 1 3719 226 69 75 chr6 30785252 30785542 -151629700 - L1M4c LINE L1 -6270 376 86 224 231 62 31 chr6 30785544 30785609 -151629633 + MER5A DNA MER1_type 80 157 -32 2138 87 13 0 chr6 30785610 30785908 -151629334 - AluSp SINE Alu -11 302 1 246 331 75 38 chr6 30786069 30786229 -151629013 - L2 LINE L2 -4 3309 3144 447 331 77 23 chr6 30786331 30786683 -151628559 - L1MEc LINE L1 -4612 1834 1398 2019 179 46 73 chr6 30786697 30787260 -151627982 + LTR10A LTR ERV1 1 548 -61 720 258 0 6 chr6 30787400 30787578 -151627664 + MLT1D LTR MaLR 1 177 -328 246 279 74 42 chr6 30787611 30787826 -151627416 - L1M4 LINE L1 -2203 4645 4424 535 261 69 57 chr6 30787857 30788263 -151626979 + L1MC5 LINE L1 7091 7501 -460 372 22 0 0 chr6 30788263 30788308 -151626934 + (T)n Simple_repeat Simple_repeat 1 45 0 360 263 160 62 chr6 30790519 30791043 -151624199 - L1M4 LINE L1 -5472 1377 707 52 50 0 0 chr6 30791353 30791433 -151623809 + GC_rich Low_complexity Low_complexity 1 80 0 25 95 0 0 chr6 30791482 30791556 -151623686 + GC_rich Low_complexity Low_complexity 1 74 0 207 180 31 87 chr6 30791656 30791817 -151623425 + (CCGGG)n Simple_repeat Simple_repeat 5 156 0 30 59 0 0 chr6 30791822 30791873 -151623369 + GC_rich Low_complexity Low_complexity 1 51 0 216 91 18 55 chr6 30791880 30791935 -151623307 + (CGGG)n Simple_repeat Simple_repeat 1 53 0 1988 210 51 9 chr6 30793852 30794319 -151620923 + L1MB2 LINE L1 5685 6171 0 552 277 72 18 chr6 30794577 30794855 -151620387 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 30795483 30795528 -151619714 + AT_rich Low_complexity Low_complexity 1 45 0 421 251 30 99 chr6 30795568 30795831 -151619411 + HAL1 LINE L1 2263 2507 0 24 77 0 0 chr6 30796971 30797023 -151618219 + AT_rich Low_complexity Low_complexity 1 52 0 390 295 131 11 chr6 30797023 30797206 -151618036 - MIR SINE MIR -39 223 19 364 241 30 91 chr6 30798903 30799135 -151616107 - L1MC4a LINE L1 -1812 5996 5779 486 284 109 35 chr6 30799261 30799553 -151615689 + L1ME3 LINE L1 5624 5937 -233 1281 236 0 4 chr6 30799557 30799837 -151615405 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 30799840 30799863 -151615379 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 242 259 0 0 chr6 30799953 30800007 -151615235 - Tigger6 DNA MER2_type -1028 55 2 1883 267 92 11 chr6 30800527 30801224 -151614018 + L1ME2 LINE L1 5411 6163 -1 25 0 0 0 chr6 30801252 30801277 -151613965 + AT_rich Low_complexity Low_complexity 1 25 0 6135 171 24 39 chr6 30801293 30801571 -151613671 + L1MA4A LINE L1 3971 4252 -2051 2417 58 0 19 chr6 30801571 30801881 -151613361 + AluY SINE Alu 1 304 -7 6135 171 24 39 chr6 30801881 30802137 -151613105 + L1MA4A LINE L1 4252 4510 -1793 792 197 0 0 chr6 30802137 30802269 -151612973 + FLAM_C SINE Alu 2 133 0 6135 171 24 39 chr6 30802269 30803941 -151611301 + L1MA4A LINE L1 4510 6137 -166 2281 76 0 35 chr6 30803941 30804256 -151610986 + AluY SINE Alu 1 304 -7 6135 171 24 39 chr6 30804256 30804421 -151610821 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 30804856 30804911 -151610331 + MLT1B LTR MaLR 1 49 -341 * 1058 158 21 16 chr6 30804902 30805092 -151610150 + MLT1B LTR MaLR 200 390 0 186 299 119 9 chr6 30805578 30805695 -151609547 - MIR SINE MIR -88 120 21 2330 99 0 3 chr6 30807699 30808002 -151607240 + AluSq SINE Alu 1 302 -11 351 315 163 0 chr6 30808033 30808217 -151607025 - MIR SINE MIR -27 235 22 189 367 0 51 chr6 30809548 30809627 -151605615 - MIR SINE MIR -165 97 23 1874 152 83 3 chr6 30809658 30810006 -151605236 + Tigger1 DNA MER2_type 2043 2418 0 1666 276 104 8 chr6 30811192 30811814 -151603428 + L2 LINE L2 18 699 -2615 1706 245 87 19 chr6 30811816 30812392 -151602850 + MLT1E2 LTR MaLR 1 615 -11 2032 232 47 123 chr6 30812423 30813439 -151601803 + L2 LINE L2 719 1657 -1657 473 292 65 19 chr6 30813616 30813876 -151601366 + LTR16B LTR ERVL 193 464 0 520 339 41 22 chr6 30814557 30814876 -151600366 + ERVL LTR ERVL 853 1177 -3819 250 348 44 13 chr6 30814901 30815128 -151600114 + ERVL LTR ERVL 1302 1535 -4119 2757 317 36 42 chr6 30815238 30816412 -151598830 + ERVL LTR ERVL 1666 2832 -2164 2224 116 3 0 chr6 30816412 30816705 -151598537 + AluSp SINE Alu 1 294 -19 2757 317 36 42 chr6 30816705 30816969 -151598273 + ERVL LTR ERVL 2832 3096 -1900 513 322 92 3 chr6 30817004 30817296 -151597946 + ERVL LTR ERVL 3187 3504 -2260 1046 345 47 35 chr6 30817359 30818523 -151596719 + ERVL LTR ERVL 3739 5260 -504 562 319 55 16 chr6 30818531 30818914 -151596328 + LTR16B LTR ERVL 62 459 -5 375 130 32 2 chr6 30819033 30819105 -151596137 + MLT1F LTR MaLR 476 539 -3 281 301 0 29 chr6 30819215 30819258 -151595984 + CT-rich Low_complexity Low_complexity 1 44 -56 2323 109 0 3 chr6 30819258 30819560 -151595682 - AluY SINE Alu -10 301 1 281 301 0 29 chr6 30819560 30819619 -151595623 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 30819632 30819740 -151595502 + CT-rich Low_complexity Low_complexity 3 114 0 558 328 134 26 chr6 30819968 30820355 -151594887 + L1ME3A LINE L1 5523 5951 -219 369 0 0 0 chr6 30820375 30820416 -151594826 + (TA)n Simple_repeat Simple_repeat 2 42 0 3619 131 0 4 chr6 30820482 30820994 -151594248 - MER9 LTR ERVK 0 511 2 6434 88 14 8 chr6 30821839 30822837 -151592405 + L1PA10 LINE L1 5164 6163 -5 2032 215 43 27 chr6 30822943 30823042 -151592200 + MLT1F1 LTR MaLR 6 102 -465 2371 133 5 24 chr6 30823042 30823424 -151591818 + THE1C LTR MaLR 1 375 0 2032 215 43 27 chr6 30823424 30823877 -151591365 + MLT1F1 LTR MaLR 102 567 0 1440 221 25 0 chr6 30823944 30824229 -151591013 - AluJb SINE Alu -19 293 2 1643 224 88 47 chr6 30824393 30824679 -151590563 + MLT1E3 LTR MaLR 3 276 -348 2237 96 0 46 chr6 30824679 30825002 -151590240 + AluYa5 SINE Alu 1 308 -3 1643 224 88 47 chr6 30825002 30825263 -151589979 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 30825399 30825448 -151589794 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 30825496 30825546 -151589696 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 30826376 30826406 -151588836 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 30827044 30827066 -151588176 + GC_rich Low_complexity Low_complexity 1 22 0 187 330 70 17 chr6 30831020 30831135 -151584107 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 30831140 30831197 -151584045 - MER30 DNA MER1_type -2 228 172 1591 336 48 34 chr6 30831587 30832635 -151582607 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 30832721 30832823 -151582419 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 30833103 30833130 -151582112 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 30833131 30833407 -151581835 - AluSq SINE Alu -36 277 1 2180 139 0 0 chr6 30833554 30833863 -151581379 + AluSg SINE Alu 1 309 -1 204 40 0 0 chr6 30834522 30834547 -151580695 + (T)n Simple_repeat Simple_repeat 1 25 0 7274 82 54 4 chr6 30834547 30835523 -151579719 - SVA Other Other -216 1170 146 942 148 0 0 chr6 30837193 30837348 -151577894 + MSTA LTR MaLR 1 155 -273 923 218 0 0 chr6 30837349 30837542 -151577700 + MSTB1-int LTR MaLR 287 479 -1172 1932 239 27 34 chr6 30837552 30838113 -151577129 + MSTB1-int LTR MaLR 1078 1634 -17 1746 210 66 10 chr6 30838129 30838538 -151576704 + MSTB1 LTR MaLR 1 432 0 504 261 78 14 chr6 30838557 30838699 -151576543 - MER21B LTR ERV1 -694 169 19 1792 241 21 24 chr6 30838798 30839309 -151575933 - MER21B-int LTR ERV1 -50 4141 3632 1579 272 30 45 chr6 30839448 30840022 -151575220 - MER21B-int LTR ERV1 -747 3444 2880 4191 239 121 43 chr6 30840028 30841344 -151573898 + L1M4 LINE L1 3242 4759 -1387 2318 74 51 0 chr6 30841344 30841640 -151573602 + AluY SINE Alu 1 311 0 4191 239 121 43 chr6 30841640 30842261 -151572981 + L1M4 LINE L1 4759 5330 -816 601 240 5 48 chr6 30842262 30842470 -151572772 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 30842476 30842575 -151572667 + FLAM_A SINE Alu 1 99 -43 1802 196 54 59 chr6 30842604 30843348 -151571894 + L1MC/D LINE L1 5016 5763 -596 777 219 233 3 chr6 30843356 30843699 -151571543 - Charlie1 DNA MER1_type -994 1767 40 651 248 22 12 chr6 30843928 30844136 -151571106 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 30844180 30844209 -151571033 + (TG)n Simple_repeat Simple_repeat 2 30 0 1850 158 80 3 chr6 30848289 30848638 -151566604 + Tigger1 DNA MER2_type 2043 2418 0 2659 270 154 29 chr6 30849856 30850467 -151564775 + L2 LINE L2 18 551 -2763 1992 227 94 26 chr6 30850467 30851053 -151564189 + MLT1E2 LTR MaLR 1 626 0 2659 270 154 29 chr6 30851053 30851897 -151563345 + L2 LINE L2 551 1656 -1658 676 339 61 14 chr6 30851897 30852340 -151562902 + LTR16B LTR ERVL 1 464 0 2920 334 39 31 chr6 30853040 30855480 -151559762 + MERVL LTR ERVL 871 3504 -1900 494 312 93 44 chr6 30855498 30855883 -151559359 + MERVL LTR ERVL 3693 4393 -900 341 345 48 36 chr6 30856493 30856969 -151558273 + MERVL LTR ERVL 4779 5260 -504 850 309 40 16 chr6 30856987 30857365 -151557877 + LTR16B LTR ERVL 73 459 -5 400 208 0 0 chr6 30857487 30857564 -151557678 + MLT1F1 LTR MaLR 491 567 0 343 191 39 39 chr6 30857704 30857882 -151557360 + CT-rich Low_complexity Low_complexity 3 180 0 434 265 144 44 chr6 30858108 30858406 -151556836 + L1ME3A LINE L1 5545 5872 -298 219 69 0 0 chr6 30858487 30858516 -151556726 + (TA)n Simple_repeat Simple_repeat 1 29 0 469 77 0 0 chr6 30859413 30859478 -151555764 - MER41A LTR ERV1 -88 466 402 6476 94 8 4 chr6 30859832 30861377 -151553865 + L1PA10 LINE L1 4619 6163 -5 1993 234 45 27 chr6 30861462 30861561 -151553681 + MLT1F1 LTR MaLR 6 102 -465 2179 121 55 25 chr6 30861561 30861925 -151553317 + THE1C LTR MaLR 1 375 0 1993 234 45 27 chr6 30861925 30862377 -151552865 + MLT1F1 LTR MaLR 102 567 0 1476 205 0 3 chr6 30862450 30862738 -151552504 - AluJb SINE Alu -25 287 1 2027 211 82 58 chr6 30862900 30863433 -151551809 + MLT1E3 LTR MaLR 3 554 -70 1235 214 37 34 chr6 30863433 30863728 -151551514 + AluJo SINE Alu 1 296 -16 2027 211 82 58 chr6 30863728 30863801 -151551441 + MLT1E3 LTR MaLR 554 624 0 203 178 89 0 chr6 30863925 30863970 -151551272 - L2 LINE L2 0 3313 3265 209 284 161 0 chr6 30864018 30864099 -151551143 - L2 LINE L2 -553 2761 2668 222 151 0 38 chr6 30866275 30866328 -151548914 + G-rich Low_complexity Low_complexity 3 53 0 3862 175 65 47 chr6 30869120 30870057 -151545185 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 30870523 30870548 -151544694 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 260 310 85 39 chr6 30870555 30870684 -151544558 + L3 LINE CR1 888 1022 -555 205 316 79 18 chr6 30870697 30870811 -151544431 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 30870814 30870898 -151544344 - MER30 DNA MER1_type 0 230 140 234 0 0 0 chr6 30871153 30871179 -151544063 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 9328 30 0 198 chr6 30871179 30872903 -151542339 + SVA Other Other 1 1383 -3 391 280 89 19 chr6 30873066 30873223 -151542019 + ERVL LTR ERVL 1989 2156 -3608 328 143 0 0 chr6 30873727 30873776 -151541466 + MLT1F LTR MaLR 491 539 -3 2380 84 3 0 chr6 30873882 30874255 -151540987 - AluY SINE Alu 0 374 1 297 308 0 33 chr6 30873885 30874314 -151540928 + CT-rich Low_complexity Low_complexity 1 116 0 231 252 19 9 chr6 30874327 30874434 -151540808 + CT-rich Low_complexity Low_complexity 3 110 0 408 303 129 16 chr6 30874673 30874983 -151540259 + L1ME3A LINE L1 5528 5872 -298 230 250 0 0 chr6 30875073 30875137 -151540105 + L1MC4 LINE L1 6640 6703 -1339 201 147 0 0 chr6 30875139 30875173 -151540069 + (TA)n Simple_repeat Simple_repeat 2 35 0 352 296 23 0 chr6 30875177 30875265 -151539977 + L1MC4 LINE L1 6614 6703 -1339 * 361 292 22 0 chr6 30875215 30875304 -151539938 - L1MC4 LINE L1 -1339 6703 6613 3501 118 24 4 chr6 30875364 30875865 -151539377 - MER9 LTR ERVK 0 511 1 6426 82 16 10 chr6 30876694 30877693 -151537549 + L1PA10 LINE L1 5164 6163 -5 2128 222 44 28 chr6 30877781 30877880 -151537362 + MLT1F1 LTR MaLR 6 102 -465 2227 149 5 24 chr6 30877880 30878262 -151536980 + THE1C LTR MaLR 1 375 0 2128 222 44 28 chr6 30878262 30878707 -151536535 + MLT1F1 LTR MaLR 102 559 -8 1289 225 25 0 chr6 30878784 30879064 -151536178 - AluJo SINE Alu -25 287 1 1852 226 96 46 chr6 30879227 30879513 -151535729 + MLT1E3 LTR MaLR 3 273 -351 2079 83 20 10 chr6 30879513 30879814 -151535428 + AluY SINE Alu 1 304 -7 1852 226 96 46 chr6 30879814 30880071 -151535171 + MLT1E3 LTR MaLR 273 573 -51 203 270 140 20 chr6 30880303 30880403 -151534839 - L2 LINE L2 -553 2761 2650 192 290 43 29 chr6 30885743 30885812 -151529430 + L3 LINE CR1 958 1027 -550 199 313 70 17 chr6 30885824 30885939 -151529303 - L2 LINE L2 -2 3311 3191 421 117 0 1 chr6 30885942 30886026 -151529216 - MER30 DNA MER1_type 0 230 140 2157 323 77 44 chr6 30886277 30887936 -151527306 + HERVL LTR ERVL 1749 3521 -1900 733 320 58 69 chr6 30887936 30888741 -151526501 + HERVL LTR ERVL 3691 4843 -534 200 128 0 26 chr6 30888742 30888781 -151526461 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 192 97 0 0 chr6 30888782 30888813 -151526429 + (TATG)n Simple_repeat Simple_repeat 2 32 0 295 271 66 44 chr6 30889023 30889204 -151526038 + HERVL LTR ERVL 5076 5260 -504 705 324 36 13 chr6 30889212 30889601 -151525641 + LTR16B LTR ERVL 63 460 -4 367 218 0 0 chr6 30889717 30889795 -151525447 + MLT1F1 LTR MaLR 488 565 -2 191 250 21 0 chr6 30889865 30889913 -151525329 + L2 LINE L2 1789 1837 -1477 337 285 143 29 chr6 30890223 30890508 -151524734 + L1ME LINE L1 5552 5869 -301 1909 127 3 0 chr6 30890764 30891075 -151524167 - AluSq SINE Alu 0 312 1 668 189 0 30 chr6 30892178 30892310 -151522932 + AluJb SINE Alu 159 286 -26 231 103 0 0 chr6 30892310 30892349 -151522893 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1868 226 39 62 chr6 30892459 30892619 -151522623 + MLT1F1 LTR MaLR 15 177 -390 1987 118 4 0 chr6 30892619 30892934 -151522308 + AluSg SINE Alu 3 318 0 1868 226 39 62 chr6 30892934 30893338 -151521904 + MLT1F1 LTR MaLR 177 567 0 2263 226 71 22 chr6 30893549 30894130 -151521112 + MLT1E3 LTR MaLR 14 622 -2 459 268 24 8 chr6 30894286 30894409 -151520833 - L2 LINE L2 -1 3312 3188 356 303 67 0 chr6 30894417 30894536 -151520706 - L2 LINE L2 -549 2765 2639 1352 173 3 32 chr6 30894909 30895192 -151520050 + AluJo SINE Alu 12 286 -26 2250 171 41 7 chr6 30898081 30898495 -151516747 + MSTA LTR MaLR 1 428 0 2635 184 13 0 chr6 30898495 30898968 -151516274 + MSTA-int LTR MaLR 1 479 -1172 2232 246 35 19 chr6 30898977 30899542 -151515700 + MSTA-int LTR MaLR 1078 1651 0 1915 196 65 8 chr6 30899552 30899951 -151515291 + MSTB1 LTR MaLR 11 432 0 548 248 109 7 chr6 30899970 30900107 -151515135 - MER21B LTR ERV1 -694 169 19 4403 253 45 30 chr6 30900205 30901461 -151513781 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 30901466 30901674 -151513568 + L1M4 LINE L1 3250 3458 -2688 509 304 26 48 chr6 30901674 30901904 -151513338 + Harlequin LTR ERV1 785 1009 -6776 6845 50 10 48 chr6 30902125 30903444 -151511798 + L1PA7 LINE L1 4861 6144 -10 864 335 24 26 chr6 30903458 30904079 -151511163 + Harlequin LTR ERV1 1073 1692 -4957 186 43 0 0 chr6 30904094 30904117 -151511125 + (GA)n Simple_repeat Simple_repeat 1 23 0 307 179 18 0 chr6 30904117 30904173 -151511069 + LTR18B LTR ERVL 346 402 -212 391 165 35 24 chr6 30904219 30904304 -151510938 + LTR18B LTR ERVL 268 353 -261 456 256 274 5 chr6 30904841 30905064 -151510178 - MER102b DNA MER1_type -3 338 56 673 311 71 63 chr6 30905717 30906307 -151508935 + Harlequin LTR ERV1 1371 1955 -5830 2288 81 0 3 chr6 30906307 30906604 -151508638 + AluY SINE Alu 1 296 -15 673 311 71 63 chr6 30906604 30906712 -151508530 + Harlequin LTR ERV1 1955 4914 -2871 327 333 0 8 chr6 30906744 30906876 -151508366 + Harlequin LTR ERV1 5554 5684 -2101 494 291 49 68 chr6 30907341 30907954 -151507288 + Harlequin LTR ERV1 3368 5490 -1159 328 333 0 0 chr6 30908030 30908120 -151507122 - L1MC4 LINE L1 -1339 6703 6614 300 53 0 0 chr6 30908177 30908215 -151507027 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1369 317 14 23 chr6 30908216 30908777 -151506465 + Harlequin LTR ERV1 7092 7647 -138 2063 200 32 13 chr6 30912151 30912718 -151502524 + L1MB3 LINE L1 4899 5483 -700 240 35 0 0 chr6 30912718 30912747 -151502495 + (CA)n Simple_repeat Simple_repeat 2 30 0 2063 200 32 13 chr6 30912747 30912997 -151502245 + L1MB3 LINE L1 5483 5727 -456 949 125 230 5 chr6 30912987 30913187 -151502055 + L1MB3 LINE L1 5938 6182 -1 * 441 194 0 0 chr6 30914921 30914993 -151500249 - FRAM/FAM SINE Alu -105 71 1 213 255 20 71 chr6 30915302 30915400 -151499842 - MIR3 SINE MIR -110 98 6 207 273 0 65 chr6 30916598 30916675 -151498567 + GA-rich Low_complexity Low_complexity 1 72 0 310 278 7 76 chr6 30916968 30917112 -151498130 - L1ME1 LINE L1 -6 6160 6027 987 139 52 17 chr6 30917403 30917575 -151497667 + FRAM SINE Alu 1 175 -1 7622 34 0 1 chr6 30918054 30919748 -151495494 + L1PA3 LINE L1 4504 6155 0 534 216 0 0 chr6 30920565 30920741 -151494501 + (TG)n Simple_repeat Simple_repeat 1 176 0 2398 91 0 0 chr6 30921643 30921950 -151493292 - AluSg SINE Alu -3 307 1 806 305 118 37 chr6 30922053 30922773 -151492469 + L2 LINE L2 2513 3307 -6 602 296 152 30 chr6 30922773 30922828 -151492414 + L1ME4a LINE L1 5539 5586 -535 1893 122 0 0 chr6 30922828 30923082 -151492160 + AluSx SINE Alu 47 300 -12 602 296 152 30 chr6 30923082 30923361 -151491881 + L1ME4a LINE L1 5586 5914 -207 1239 202 40 44 chr6 30923677 30923974 -151491268 - AluJo SINE Alu -16 296 1 1580 178 14 10 chr6 30924693 30924985 -151490257 - AluJb SINE Alu -19 293 1 407 277 30 136 chr6 30925266 30925413 -151489829 - L2 LINE L2 0 3272 3180 414 39 0 0 chr6 30925413 30925465 -151489777 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 407 277 30 136 chr6 30925465 30925656 -151489586 - L2 LINE L2 -92 3180 2970 254 256 26 68 chr6 30925825 30925942 -151489300 + MER5A DNA MER1_type 55 166 -23 * 717 142 9 0 chr6 30925868 30925974 -151489268 - MER5A DNA MER1_type -80 109 3 259 330 23 39 chr6 30926942 30927200 -151488042 - L1MC4a LINE L1 -1785 6023 5770 341 299 99 24 chr6 30927324 30927618 -151487624 + L1ME3 LINE L1 5625 5940 -222 1617 192 7 7 chr6 30927619 30927911 -151487331 + AluJb SINE Alu 1 292 -20 1824 261 97 10 chr6 30928593 30929293 -151485949 + L1ME2 LINE L1 5402 6162 -2 963 207 18 0 chr6 30929339 30929556 -151485686 + L1MA4A LINE L1 3742 3962 -2184 5419 151 25 27 chr6 30929568 30931013 -151484229 + L1MA4A LINE L1 4861 6298 -5 284 73 0 109 chr6 30931438 30931493 -151483749 + MLT1B LTR MaLR 1 49 -341 * 941 161 33 0 chr6 30931490 30931670 -151483572 + MLT1B LTR MaLR 205 390 0 287 305 49 44 chr6 30932091 30932271 -151482971 - MIR SINE MIR -63 199 21 180 195 98 0 chr6 30934809 30934850 -151480392 - MIR SINE MIR -98 164 120 184 367 0 51 chr6 30934918 30934997 -151480245 - MIR SINE MIR -165 97 23 574 163 98 0 chr6 30935027 30935150 -151480092 + Tigger1 DNA MER2_type 2042 2176 -242 2818 230 72 104 chr6 30935150 30935518 -151479724 + L2 LINE L2 295 673 -2641 1943 218 101 27 chr6 30935518 30936101 -151479141 + MLT1E2 LTR MaLR 1 626 0 2818 230 72 104 chr6 30936101 30937139 -151478103 + L2 LINE L2 673 1656 -1658 884 306 72 27 chr6 30937139 30937583 -151477659 + LTR16B LTR ERVL 1 464 0 2746 317 50 42 chr6 30938273 30939859 -151475383 + ERVL LTR ERVL 858 2430 -2855 2030 129 7 0 chr6 30939859 30940138 -151475104 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 30940142 30940173 -151475069 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 2746 317 50 42 chr6 30940173 30940969 -151474273 + ERVL LTR ERVL 2432 3385 -1900 786 370 38 14 chr6 30941161 30941953 -151473289 + ERVL LTR ERVL 4103 4914 -571 456 323 18 0 chr6 30942267 30942431 -151472811 + LTR16B LTR ERVL 62 228 -236 886 208 15 15 chr6 30942441 30942638 -151472604 + MLT1F1 LTR MaLR 371 567 0 1680 175 7 10 chr6 30942702 30942999 -151472243 - AluJb SINE Alu -16 296 1 1745 222 77 71 chr6 30943172 30943695 -151471547 + MLT1E3 LTR MaLR 14 543 -81 1357 223 9 28 chr6 30943695 30944013 -151471229 + AluJo SINE Alu 1 312 0 1745 222 77 71 chr6 30944013 30944096 -151471146 + MLT1E3 LTR MaLR 543 624 0 217 204 0 0 chr6 30944231 30944280 -151470962 - L2 LINE L2 0 3313 3265 283 268 56 0 chr6 30944329 30944400 -151470842 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 30945201 30945234 -151470008 + A-rich Low_complexity Low_complexity 1 33 0 1141 298 97 25 chr6 30949891 30950009 -151465233 - L2 LINE L2 -2 3311 3203 942 170 55 77 chr6 30950009 30950244 -151464998 - MER30 DNA MER1_type 0 230 1 1141 298 97 25 chr6 30950244 30951024 -151464218 - L2 LINE L2 -110 3203 2352 410 247 42 47 chr6 30951307 30951589 -151463653 + L1MEc LINE L1 2145 2386 -3829 891 203 38 0 chr6 30951672 30951830 -151463412 - FRAM SINE Alu -14 162 1 506 182 170 42 chr6 30952339 30952504 -151462738 + MER20 DNA MER1_type 32 217 -2 311 285 169 15 chr6 30952505 30952635 -151462607 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 30953957 30953978 -151461264 + AT_rich Low_complexity Low_complexity 1 21 0 1457 231 46 27 chr6 30954152 30954629 -151460613 + L1MB4 LINE L1 4904 5389 -757 2279 114 0 7 chr6 30954640 30954939 -151460303 + AluSc SINE Alu 1 297 -12 3476 164 44 9 chr6 30954983 30955648 -151459594 + L1MB4 LINE L1 5493 6180 0 1074 169 4 24 chr6 30955792 30956029 -151459213 - MER4A LTR ERV1 -113 551 261 601 105 0 21 chr6 30956033 30956128 -151459114 - MER4A LTR ERV1 -571 93 1 376 243 40 0 chr6 30956147 30956295 -151458947 + L1MC5 LINE L1 7299 7452 -509 429 359 46 27 chr6 30956394 30957076 -151458166 + HERVL18 LTR ERVL 2726 3478 -1925 431 348 27 27 chr6 30957243 30957787 -151457455 + HERVL18 LTR ERVL 3619 4228 -1181 276 229 14 0 chr6 30958547 30958617 -151456625 + MER4B-int LTR ERV1 6000 6070 -688 1751 182 61 26 chr6 30958623 30959051 -151456191 + LTR47B LTR ERVL 1 443 0 516 266 65 62 chr6 30960295 30960396 -151454846 + L1MC5 LINE L1 7352 7451 -510 2871 179 16 11 chr6 30960396 30960948 -151454294 + MER41D LTR ERV1 3 557 0 516 266 65 62 chr6 30960948 30961264 -151453978 + L1MC5 LINE L1 7451 7770 -191 1839 194 16 32 chr6 30961280 30961835 -151453407 + L1MC3 LINE L1 7000 7692 -93 347 242 83 17 chr6 30961900 30962020 -151453222 + L1MC5 LINE L1 7790 7917 -44 1624 155 97 7 chr6 30962031 30962309 -151452933 + AluJo SINE Alu 1 303 -9 2689 170 42 5 chr6 30962380 30962957 -151452285 - L1MB3 LINE L1 0 6183 5586 862 109 32 19 chr6 30964702 30964858 -151450384 - L1MA5 LINE L1 0 6300 6143 6908 186 4 6 chr6 30964858 30966623 -151448619 + L1PB1 LINE L1 3770 5530 -621 1369 50 0 2 chr6 30966623 30966882 -151448360 - AluY SINE Alu -2 309 1 3350 96 54 15 chr6 30966882 30967415 -151447827 + L1PB1 LINE L1 5514 6067 -84 7064 159 28 120 chr6 30967440 30967892 -151447350 - L1MB3 LINE L1 -841 5305 4813 2254 82 41 0 chr6 30967892 30968185 -151447057 + AluSg SINE Alu 1 305 -5 7064 159 28 120 chr6 30968185 30969826 -151445416 - L1MB3 LINE L1 -1333 4813 3405 2214 180 87 74 chr6 30969827 30969927 -151445315 - MER65-int LTR ERV1 -757 1029 932 2932 6 0 0 chr6 30969927 30970245 -151444997 + AluYb8 SINE Alu 1 318 0 2214 180 87 74 chr6 30970245 30970679 -151444563 - MER65-int LTR ERV1 -854 932 1097 2409 77 0 0 chr6 30970679 30970976 -151444266 + AluY SINE Alu 1 297 -14 2214 180 87 74 chr6 30970976 30971262 -151443980 - MER65-int LTR ERV1 -688 1098 817 2270 71 3 14 chr6 30971699 30971995 -151443247 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 30972845 30972873 -151442369 + AT_rich Low_complexity Low_complexity 1 28 0 315 274 53 26 chr6 30973422 30973535 -151441707 + L2 LINE L2 1697 1812 -1502 1435 270 143 56 chr6 30973536 30974063 -151441179 - HAL1 LINE L1 -9 2498 2018 975 205 124 69 chr6 30974063 30974409 -151440833 + MLT1A1 LTR MaLR 1 365 0 1435 270 143 56 chr6 30974409 30975286 -151439956 - HAL1 LINE L1 -489 2018 972 240 356 46 26 chr6 30975347 30975541 -151439701 + L2 LINE L2 3116 3313 0 238 326 35 28 chr6 30975765 30975906 -151439336 + MIR SINE MIR 101 242 -20 437 344 28 41 chr6 30975920 30976141 -151439101 - L1ME LINE L1 -354 5767 5549 1999 64 4 16 chr6 30976141 30976421 -151438821 - AluY SINE Alu 0 312 36 437 344 28 41 chr6 30976421 30976515 -151438727 - L1ME LINE L1 -572 5549 5455 1860 261 83 4 chr6 30976672 30977235 -151438007 + MER90 LTR ERV1 5 612 -2 1772 171 24 0 chr6 30977564 30977851 -151437391 + AluSx SINE Alu 1 294 -18 1042 168 35 15 chr6 30978286 30978488 -151436754 - MER3 DNA MER1_type -2 207 2 1593 194 57 17 chr6 30978490 30978841 -151436401 + MLT1A1 LTR MaLR 1 365 0 1478 181 0 106 chr6 30978904 30979235 -151436007 + AluJo SINE Alu 1 296 -16 3524 221 100 41 chr6 30979557 30979908 -151435334 + Charlie1a DNA MER1_type 7 336 -2425 2026 141 3 13 chr6 30979908 30980213 -151435029 + AluSx SINE Alu 1 302 -10 3524 221 100 41 chr6 30980213 30980805 -151434437 + Charlie1a DNA MER1_type 336 892 -1869 1411 197 48 7 chr6 30980805 30981100 -151434142 + AluJo SINE Alu 1 307 -5 3524 221 100 41 chr6 30981100 30981523 -151433719 + Charlie1a DNA MER1_type 892 1455 0 276 233 181 35 chr6 30982294 30982410 -151432832 + L3 LINE CR1 956 1088 -489 * 2333 277 111 29 chr6 30982377 30983510 -151431732 - L2 LINE L2 -2 3311 2108 302 278 308 0 chr6 30983583 30983716 -151431526 - MER5A DNA MER1_type -7 182 9 319 299 132 7 chr6 30983745 30983889 -151431353 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 30983976 30984006 -151431236 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 403 326 47 63 chr6 30984028 30984390 -151430852 - LTR67 LTR ERVL -98 459 104 2670 147 125 10 chr6 30984912 30985409 -151429833 - MER21A LTR ERV1 0 931 378 1174 135 90 12 chr6 30985416 30985661 -151429581 - MER21A LTR ERV1 -667 264 1 1924 176 3 29 chr6 30985670 30986045 -151429197 - MLT1A1 LTR MaLR 0 365 1 5313 201 47 61 chr6 30986122 30986494 -151428748 + L1MB7 LINE L1 3576 3951 -2233 567 238 0 24 chr6 30986494 30986620 -151428622 + FLAM_A SINE Alu 4 126 -7 5313 201 47 61 chr6 30986620 30986703 -151428539 + L1MB7 LINE L1 3951 4034 -2150 1944 138 126 31 chr6 30986703 30987093 -151428149 - MSTA LTR MaLR -1 427 1 5313 201 47 61 chr6 30987093 30987720 -151427522 + L1MB7 LINE L1 4034 4668 -1516 1907 160 6 13 chr6 30987720 30988032 -151427210 + AluJo SINE Alu 1 310 -2 5313 201 47 61 chr6 30988032 30988278 -151426964 + L1MB7 LINE L1 4668 4916 -1268 1627 218 21 46 chr6 30988278 30988755 -151426487 + MLT1C LTR MaLR 3 467 0 5313 201 47 61 chr6 30988755 30988872 -151426370 + L1MB7 LINE L1 4916 5033 -1151 2323 85 0 0 chr6 30988872 30989154 -151426088 + AluSg SINE Alu 1 282 -28 291 28 0 0 chr6 30989154 30989190 -151426052 + (TA)n Simple_repeat Simple_repeat 2 37 0 5313 201 47 61 chr6 30989190 30989324 -151425918 + L1MB7 LINE L1 5032 5166 -1018 336 125 111 0 chr6 30989324 30989396 -151425846 + L1MA7 LINE L1 6211 6290 -1 5313 201 47 61 chr6 30989396 30989586 -151425656 + L1MB7 LINE L1 5166 5357 -827 2164 134 0 0 chr6 30989586 30989884 -151425358 + AluSx SINE Alu 3 300 -12 5313 201 47 61 chr6 30989884 30990002 -151425240 + L1MB7 LINE L1 5357 5475 -709 2176 102 0 3 chr6 30990002 30990285 -151424957 + AluSg SINE Alu 1 282 -28 291 114 0 0 chr6 30990285 30990329 -151424913 + (CA)n Simple_repeat Simple_repeat 2 45 0 5313 201 47 61 chr6 30990329 30990994 -151424248 + L1MB7 LINE L1 5473 6123 -61 5404 135 53 26 chr6 30991057 30991339 -151423903 - L1MA4A LINE L1 -6 6297 6024 303 49 0 0 chr6 30991339 30991380 -151423862 + (CA)n Simple_repeat Simple_repeat 1 41 0 5404 135 53 26 chr6 30991380 30992591 -151422651 - L1MA4A LINE L1 -279 6024 4750 1243 145 26 5 chr6 30992653 30992846 -151422396 - AluJb SINE Alu -16 296 100 1939 181 15 2 chr6 30992847 30993251 -151421991 + L1 LINE L1 3439 3847 -2299 235 196 0 0 chr6 30993811 30993857 -151421385 - L2 LINE L2 -5 3308 3263 616 171 138 126 chr6 30994044 30994378 -151420864 + L1ME3A LINE L1 5727 6064 -106 718 199 64 6 chr6 30995235 30995406 -151419836 - MER3 DNA MER1_type 0 209 29 338 378 67 31 chr6 30995833 30996026 -151419216 + L2 LINE L2 3048 3247 -25 255 180 16 16 chr6 30996324 30996385 -151418857 - MIR SINE MIR -111 151 91 521 266 91 35 chr6 30998487 30998686 -151416556 + MIR SINE MIR 5 214 -48 1846 139 6 59 chr6 31002126 31002449 -151412793 - AluJb SINE Alu -6 306 1 1638 261 46 38 chr6 31002604 31003497 -151411745 - L1MEd LINE L1 -4862 1257 440 30 0 0 0 chr6 31003870 31003900 -151411342 + AT_rich Low_complexity Low_complexity 1 30 0 389 216 72 22 chr6 31003907 31004046 -151411196 - L1M4 LINE L1 -922 5224 5079 2075 120 113 49 chr6 31004840 31005248 -151409994 + Tigger2a DNA MER2_type 1 434 0 222 282 153 0 chr6 31006155 31006240 -151409002 + L2 LINE L2 3132 3229 -43 1718 211 75 64 chr6 31010257 31010715 -151404527 + MLT1E3 LTR MaLR 87 553 -71 1418 224 14 10 chr6 31010715 31011010 -151404232 + AluJo SINE Alu 1 296 -16 1718 211 75 64 chr6 31011010 31011083 -151404159 + MLT1E3 LTR MaLR 553 624 0 226 204 0 0 chr6 31011206 31011255 -151403987 - L2 LINE L2 0 3313 3265 214 284 161 0 chr6 31011303 31011384 -151403858 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 31013518 31013571 -151401671 + G-rich Low_complexity Low_complexity 3 53 0 3855 183 64 45 chr6 31016368 31017304 -151397938 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 31017770 31017795 -151397447 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 251 292 21 42 chr6 31017839 31017935 -151397307 + L3 LINE CR1 934 1027 -550 195 316 88 26 chr6 31017944 31018058 -151397184 - L2 LINE L2 -2 3311 3191 397 128 0 1 chr6 31018061 31018145 -151397097 - MER30 DNA MER1_type 0 230 140 339 287 89 19 chr6 31018555 31018712 -151396530 + ERVL LTR ERVL 1989 2156 -3608 313 143 0 0 chr6 31019177 31019226 -151396016 + MLT1F LTR MaLR 491 539 -3 2507 87 3 0 chr6 31019336 31019707 -151395535 - AluY SINE Alu 0 372 1 231 252 19 9 chr6 31019779 31019886 -151395356 + CT-rich Low_complexity Low_complexity 3 110 0 357 319 119 7 chr6 31020125 31020435 -151394807 + L1ME3A LINE L1 5528 5872 -298 287 104 21 0 chr6 31020519 31020567 -151394675 + (TA)n Simple_repeat Simple_repeat 1 49 0 3524 118 24 4 chr6 31020633 31021133 -151394109 - MER9 LTR ERVK 0 511 2 6379 84 16 10 chr6 31021963 31022962 -151392280 + L1PA10 LINE L1 5164 6163 -5 1975 222 44 28 chr6 31023050 31023149 -151392093 + MLT1F1 LTR MaLR 6 102 -465 2242 152 5 24 chr6 31023149 31023531 -151391711 + THE1C LTR MaLR 1 375 0 1975 222 44 28 chr6 31023531 31023976 -151391266 + MLT1F1 LTR MaLR 102 559 -8 1471 220 25 0 chr6 31024047 31024333 -151390909 - AluJo SINE Alu -19 293 1 1694 224 96 46 chr6 31024496 31024782 -151390460 + MLT1E3 LTR MaLR 3 273 -351 2253 91 16 10 chr6 31024782 31025090 -151390152 + AluY SINE Alu 1 310 -1 1694 224 96 46 chr6 31025090 31025347 -151389895 + MLT1E3 LTR MaLR 273 573 -51 208 254 30 0 chr6 31025742 31025809 -151389433 + GA-rich Low_complexity Low_complexity 1 69 0 503 293 136 38 chr6 31126741 31127086 -151288156 + L3 LINE CR1 946 1324 -253 180 175 100 0 chr6 31127162 31127202 -151288040 + L2 LINE L2 3220 3263 -9 2378 103 0 0 chr6 31127639 31127940 -151287302 - AluSq SINE Alu -12 301 1 26 30 0 0 chr6 31127944 31127977 -151287265 + AT_rich Low_complexity Low_complexity 1 33 0 720 176 84 27 chr6 31128106 31128360 -151286882 + HsTC2 DNA Tc2 3 308 -1590 554 283 29 0 chr6 31128399 31128572 -151286670 + HsTC2 DNA Tc2 1718 1895 -3 1884 137 0 29 chr6 31128829 31129135 -151286107 - AluJb SINE Alu -14 298 2 23 0 0 0 chr6 31129566 31129589 -151285653 + AT_rich Low_complexity Low_complexity 1 23 0 2335 81 3 3 chr6 31129677 31129975 -151285267 - AluSq SINE Alu -15 298 1 852 128 0 71 chr6 31130698 31130839 -151284403 - FLAM_C SINE Alu -10 133 3 723 171 137 55 chr6 31132202 31132348 -151282894 - FRAM SINE Alu -8 158 1 1112 170 0 1 chr6 31132371 31132594 -151282648 - AluJo SINE Alu -30 282 28 891 152 0 0 chr6 31132608 31132733 -151282509 - AluJo SINE Alu -177 125 1 2351 106 3 0 chr6 31134331 31134643 -151280599 + AluSq SINE Alu 1 313 0 3133 126 26 67 chr6 31135953 31136523 -151278719 - LTR10A LTR ERV1 -62 547 1 563 201 76 7 chr6 31136915 31137059 -151278183 - MER5B DNA MER1_type -24 154 1 2067 104 3 20 chr6 31137380 31137678 -151277564 + AluSx SINE Alu 1 293 -19 462 272 78 52 chr6 31138350 31138680 -151276562 + L1MC4a LINE L1 5531 5819 -302 2100 69 4 11 chr6 31139284 31139546 -151275696 + AluSg SINE Alu 1 260 -50 630 199 26 33 chr6 31141765 31141960 -151273282 + L1MB8 LINE L1 5975 6178 0 2383 53 0 3 chr6 31142449 31142764 -151272478 + AluY SINE Alu 1 314 0 2017 128 0 29 chr6 31143540 31143846 -151271396 - AluJo SINE Alu -15 297 1 525 314 123 5 chr6 31143881 31144101 -151271141 + MIR SINE MIR 2 247 -15 22 0 0 0 chr6 31144110 31144132 -151271110 + AT_rich Low_complexity Low_complexity 1 22 0 3652 182 57 90 chr6 31144312 31145396 -151269846 - L1MD3 LINE L1 0 8042 7008 291 301 53 18 chr6 31145676 31145789 -151269453 + MIR SINE MIR 96 212 -50 199 170 128 0 chr6 31145879 31145926 -151269316 - MIR SINE MIR -114 148 96 27 0 0 0 chr6 31147948 31147975 -151267267 + AT_rich Low_complexity Low_complexity 1 27 0 2743 147 11 71 chr6 31148156 31148205 -151267037 + L1PB4 LINE L1 5656 5706 -450 2243 94 0 10 chr6 31148205 31148517 -151266725 - AluSx SINE Alu 0 309 1 2743 147 11 71 chr6 31148517 31148972 -151266270 + L1PB4 LINE L1 5706 6130 -26 1626 174 41 10 chr6 31148972 31149266 -151265976 - AluJo SINE Alu -9 303 1 2743 147 11 71 chr6 31149266 31149291 -151265951 + L1PB4 LINE L1 6130 6155 -1 2132 138 0 0 chr6 31150172 31150470 -151264772 - AluSx SINE Alu -3 309 12 773 153 0 32 chr6 31150591 31150715 -151264527 - FRAM SINE Alu -14 162 43 617 137 11 0 chr6 31151282 31151377 -151263865 + FRAM SINE Alu 75 170 -6 229 282 0 26 chr6 31151497 31151575 -151263667 + L1MC5 LINE L1 7832 7907 -54 236 218 69 89 chr6 31152546 31152647 -151262595 - MIR SINE MIR -40 222 124 507 214 29 86 chr6 31153326 31153369 -151261873 - MER5B DNA MER1_type -1 177 133 2283 93 7 0 chr6 31153369 31153670 -151261572 - AluSg SINE Alu -6 304 2 507 214 29 86 chr6 31153670 31153766 -151261476 - MER5B DNA MER1_type -45 133 46 2336 69 0 3 chr6 31154031 31154355 -151260887 + AluY SINE Alu 1 311 0 465 278 81 0 chr6 31154492 31154665 -151260577 + MIR SINE MIR 35 221 -41 2230 104 0 0 chr6 31154945 31155252 -151259990 + AluSc SINE Alu 1 307 0 963 167 42 0 chr6 31156079 31156247 -151258995 - AluSg/x SINE Alu -2 308 134 715 125 36 0 chr6 31156247 31156359 -151258883 + AluSg/x SINE Alu 182 297 -13 450 36 0 0 chr6 31156359 31156415 -151258827 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 500 231 319 0 chr6 31158559 31158741 -151256501 + MIR SINE MIR 23 262 0 1941 133 4 0 chr6 31158799 31159077 -151256165 + AluJb SINE Alu 1 279 -33 676 183 87 0 chr6 31159184 31159299 -151255943 - FLAM_A SINE Alu -6 127 3 249 266 43 32 chr6 31160175 31160269 -151254973 + MIR SINE MIR 123 217 -45 2335 105 0 6 chr6 31160524 31160838 -151254404 - AluSq SINE Alu 0 313 2 972 223 147 44 chr6 31161275 31161784 -151253458 - MLT1G LTR MaLR -5 537 3 709 126 0 9 chr6 31161926 31162037 -151253205 - L1MA3 LINE L1 0 6305 6196 2331 155 45 55 chr6 31162441 31162951 -151252291 - MLT1D LTR MaLR 0 505 1 2171 132 0 0 chr6 31163101 31163397 -151251845 - AluSx SINE Alu -16 296 1 229 337 35 0 chr6 31164563 31164649 -151250593 - L2 LINE L2 -31 3241 3153 335 219 248 0 chr6 31164787 31164892 -151250350 + MER94 DNA DNA 1 131 -3 1964 150 14 7 chr6 31164967 31165261 -151249981 - AluJb SINE Alu -16 296 1 195 42 0 0 chr6 31165843 31165867 -151249375 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 217 200 10 70 chr6 31169385 31169485 -151245757 + G-rich Low_complexity Low_complexity 5 98 0 197 163 0 23 chr6 31170132 31170175 -151245067 + MIR SINE MIR 113 154 -108 238 252 233 0 chr6 31170493 31170596 -151244646 + L2 LINE L2 3144 3270 -2 182 312 94 51 chr6 31171260 31171398 -151243844 - MIR3 SINE MIR -61 147 4 276 30 0 0 chr6 31171473 31171506 -151243736 + (TG)n Simple_repeat Simple_repeat 1 33 0 1884 118 0 8 chr6 31172375 31172637 -151242605 + AluSq SINE Alu 1 260 -53 232 48 48 0 chr6 31172642 31172684 -151242558 + (CAA)n Simple_repeat Simple_repeat 2 45 0 193 232 43 58 chr6 31172716 31172785 -151242457 - L2 LINE L2 -9 3304 3237 2349 84 0 32 chr6 31173677 31173985 -151241257 - AluSg SINE Alu -12 298 1 197 276 13 40 chr6 31174003 31174079 -151241163 - MER5A DNA MER1_type -3 186 113 351 310 152 6 chr6 31174296 31174454 -151240788 + MIR3 SINE MIR 20 200 -8 276 174 0 0 chr6 31175513 31175559 -151239683 - Charlie1 DNA MER1_type -15 2746 2701 * 336 295 0 0 chr6 31175545 31175623 -151239619 - Charlie1 DNA MER1_type -2679 82 5 2404 82 0 3 chr6 31175847 31176151 -151239091 - AluSg SINE Alu -7 303 1 350 308 147 0 chr6 31176332 31176488 -151238754 + LTR33 LTR ERVL 34 212 -309 1049 226 186 75 chr6 31179042 31179491 -151235751 + L2 LINE L2 2334 2731 -582 1914 149 0 14 chr6 31179491 31179786 -151235456 - AluSx SINE Alu -21 291 1 1049 226 186 75 chr6 31179786 31180136 -151235106 + L2 LINE L2 2731 3041 -272 213 39 0 0 chr6 31180136 31180162 -151235080 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2352 84 0 3 chr6 31180167 31180453 -151234789 - AluSx SINE Alu -27 285 1 1049 226 186 75 chr6 31180453 31180473 -151234769 + L2 LINE L2 3044 3311 -2 2132 128 7 3 chr6 31180900 31181204 -151234038 + AluSx SINE Alu 1 305 -7 3572 159 32 10 chr6 31181204 31181828 -151233414 - L1MB2 LINE L1 -13 6158 5521 2036 134 0 10 chr6 31181885 31182214 -151233028 + AluSx SINE Alu 1 326 0 1369 168 137 18 chr6 31183143 31183471 -151231771 - MER58D DNA MER1_type -3 383 17 2437 88 0 0 chr6 31183744 31184038 -151231204 + AluSc SINE Alu 1 294 -15 677 194 6 0 chr6 31185146 31185311 -151229931 + (CAT)n Simple_repeat Simple_repeat 2 167 0 * 743 159 7 0 chr6 31185282 31185433 -151229809 + (CCA)n Simple_repeat Simple_repeat 1 152 0 975 120 0 0 chr6 31185454 31185672 -151229570 + (CCA)n Simple_repeat Simple_repeat 1 218 0 567 239 0 0 chr6 31185699 31185866 -151229376 + (CCA)n Simple_repeat Simple_repeat 1 167 0 372 248 0 0 chr6 31185924 31186041 -151229201 + (CCA)n Simple_repeat Simple_repeat 2 118 0 258 235 0 47 chr6 31186042 31186127 -151229115 - MIR SINE MIR -110 152 72 1834 154 3 17 chr6 31188114 31188406 -151226836 + AluJb SINE Alu 1 288 -24 201 74 0 0 chr6 31190326 31190353 -151224889 + (CAT)n Simple_repeat Simple_repeat 3 29 0 267 31 0 0 chr6 31190637 31190669 -151224573 + (TG)n Simple_repeat Simple_repeat 1 32 0 209 146 21 0 chr6 31190669 31190717 -151224525 + GA-rich Low_complexity Low_complexity 2 50 0 209 171 0 0 chr6 31190754 31190789 -151224453 + CT-rich Low_complexity Low_complexity 2 36 0 375 315 40 7 chr6 31191278 31191427 -151223815 - MIR3 SINE MIR -38 170 17 538 280 126 5 chr6 31191568 31191775 -151223467 - MIR SINE MIR -27 235 4 2388 95 3 13 chr6 31193348 31193664 -151221578 + AluSq SINE Alu 1 313 0 330 107 0 0 chr6 31193674 31193730 -151221512 + (GA)n Simple_repeat Simple_repeat 1 56 0 222 37 0 0 chr6 31194746 31194773 -151220469 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 409 242 47 71 chr6 31195523 31195743 -151219499 + MER20B DNA MER1_type 1 219 0 21 0 0 0 chr6 31195872 31195893 -151219349 + AT_rich Low_complexity Low_complexity 1 21 0 486 236 55 0 chr6 31196006 31196145 -151219097 - MIR SINE MIR -63 145 44 2824 143 33 18 chr6 31196349 31196804 -151218438 + MLT1C LTR MaLR 6 467 0 258 312 0 0 chr6 31196815 31196892 -151218350 + MIR SINE MIR 169 245 -17 260 298 125 0 chr6 31196950 31197054 -151218188 - L3b LINE CR1 -270 1313 1197 308 299 60 12 chr6 31197168 31197335 -151217907 + L1MB8 LINE L1 5774 5948 -230 571 239 178 15 chr6 31197364 31197561 -151217681 - MIR SINE MIR -33 229 1 328 230 86 53 chr6 31197593 31197745 -151217497 - MER34B LTR ERV1 -183 382 226 367 143 48 24 chr6 31197857 31197941 -151217301 - MER34C LTR ERV1 -471 114 29 35 0 0 0 chr6 31198485 31198520 -151216722 + AT_rich Low_complexity Low_complexity 1 35 0 2154 103 0 26 chr6 31198974 31199276 -151215966 - AluSx SINE Alu -18 294 1 198 278 191 8 chr6 31199709 31199835 -151215407 + MIR SINE MIR 8 156 -106 367 310 30 10 chr6 31200496 31200696 -151214546 + Charlie2 DNA MER1_type 1855 2058 -804 3444 32 0 0 chr6 31200732 31201333 -151213909 - L1PA4 LINE L1 -498 5657 5057 4017 59 0 0 chr6 31201333 31201819 -151213423 + L1PA4 LINE L1 5659 6147 -8 5466 184 24 46 chr6 31201834 31202970 -151212272 + L1M4 LINE L1 -215 895 -5385 2087 221 37 71 chr6 31202958 31203198 -151212044 + L1M4 LINE L1 1323 1570 -4993 * 1709 130 28 0 chr6 31203198 31203482 -151211760 + L1MA4 LINE L1 6009 6300 0 2087 221 37 71 chr6 31203482 31204111 -151211131 + L1M4 LINE L1 1570 2302 -4261 936 195 43 17 chr6 31204133 31204364 -151210878 + Charlie2 DNA MER1_type 2040 2276 -586 27 29 0 0 chr6 31204378 31204412 -151210830 + AT_rich Low_complexity Low_complexity 1 34 0 2185 112 28 0 chr6 31204412 31204697 -151210545 - AluSx SINE Alu -19 293 1 1089 110 0 0 chr6 31204769 31204914 -151210328 + AluSg/x SINE Alu 155 299 -11 215 192 40 19 chr6 31205333 31205395 -151209847 + GA-rich Low_complexity Low_complexity 1 63 0 189 174 43 14 chr6 31206050 31206119 -151209123 + GA-rich Low_complexity Low_complexity 1 71 0 2518 87 3 0 chr6 31206841 31207153 -151208089 - AluSp SINE Alu 0 313 1 2035 187 66 0 chr6 31210701 31211108 -151204134 + MER63B DNA MER1_type 2 435 -1 980 201 3 106 chr6 31211270 31211374 -151203868 + MLT1A2 LTR MaLR 1 114 -260 2222 98 3 17 chr6 31211374 31211669 -151203573 + AluSp SINE Alu 1 291 -22 980 201 3 106 chr6 31211669 31211857 -151203385 + MLT1A2 LTR MaLR 114 263 -111 1378 211 63 46 chr6 31211898 31212336 -151202906 + MER39 LTR ERV1 67 707 0 587 150 50 0 chr6 31212349 31212449 -151202793 + MLT1A2 LTR MaLR 286 390 0 1922 161 28 0 chr6 31212779 31213070 -151202172 - AluJb SINE Alu -13 299 1 351 180 123 49 chr6 31213507 31213629 -151201613 - L1ME4a LINE L1 -21 6100 5970 22 0 0 0 chr6 31214021 31214043 -151201199 + AT_rich Low_complexity Low_complexity 1 22 0 2350 88 0 16 chr6 31214045 31214351 -151200891 + AluSx SINE Alu 1 301 -11 443 299 68 32 chr6 31214358 31214636 -151200606 - L1ME4a LINE L1 -2 6119 5832 30 0 0 0 chr6 31214789 31214819 -151200423 + AT_rich Low_complexity Low_complexity 1 30 0 580 288 47 33 chr6 31214824 31215036 -151200206 - MIR SINE MIR -35 227 13 889 203 21 10 chr6 31215559 31215751 -151199491 - MIR SINE MIR -10 252 59 225 361 17 8 chr6 31215795 31215914 -151199328 - L2 LINE L2 -159 3113 2994 2340 87 0 10 chr6 31215914 31216226 -151199016 + AluY SINE Alu 1 309 -2 234 274 167 27 chr6 31216254 31216517 -151198725 + L1ME LINE L1 5523 5822 -299 1277 197 4 17 chr6 31217036 31217275 -151197967 - MLT1C LTR MaLR -2 465 230 912 193 6 0 chr6 31217276 31217437 -151197805 - FRAM SINE Alu -14 162 1 945 143 26 2 chr6 31217440 31217632 -151197610 - MLT1C LTR MaLR -233 234 2 190 185 25 185 chr6 31218075 31218156 -151197086 + L2 LINE L2 3126 3193 -79 1610 181 10 91 chr6 31218492 31218844 -151196398 - MLT1A1 LTR MaLR 0 365 47 1806 166 0 13 chr6 31218844 31219152 -151196090 - AluJb SINE Alu -8 304 1 1610 181 10 91 chr6 31219152 31219196 -151196046 - MLT1A1 LTR MaLR -318 47 1 255 366 40 40 chr6 31219333 31219508 -151195734 - L2 LINE L2 -6 3266 3092 262 191 79 0 chr6 31219806 31219869 -151195373 + MIR SINE MIR 85 152 -56 712 276 60 13 chr6 31219913 31219956 -151195286 - MIR SINE MIR -13 249 209 2138 102 17 7 chr6 31219956 31220249 -151194993 - AluSx SINE Alu -16 296 1 712 276 60 13 chr6 31220249 31220437 -151194805 - MIR SINE MIR -53 209 7 2108 120 20 3 chr6 31221356 31221655 -151193587 - AluSq SINE Alu -9 304 1 247 267 0 0 chr6 31221829 31221915 -151193327 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 243 240 0 0 chr6 31222040 31222090 -151193152 + (TG)n Simple_repeat Simple_repeat 2 51 0 4181 223 68 8 chr6 31222179 31222259 -151192983 - L1MD2 LINE L1 -13 6346 6272 547 154 103 68 chr6 31222259 31222376 -151192866 - FLAM_A SINE Alu -12 121 1 4181 223 68 8 chr6 31222376 31222470 -151192772 - L1MD2 LINE L1 -87 6272 6185 297 0 0 0 chr6 31222470 31222503 -151192739 + (TG)n Simple_repeat Simple_repeat 2 34 0 4181 223 68 8 chr6 31222503 31223354 -151191888 - L1MD2 LINE L1 -174 6185 5258 292 135 14 40 chr6 31223379 31223453 -151191789 - L1MEd LINE L1 -5011 1108 1037 1861 170 23 7 chr6 31223453 31223759 -151191483 - AluJb SINE Alu 0 312 2 377 210 20 120 chr6 31223763 31223963 -151191279 - L1MEd LINE L1 -5169 950 771 311 309 36 36 chr6 31224021 31224189 -151191053 - L1ME3A LINE L1 -5 6165 5998 440 295 77 13 chr6 31225720 31225876 -151189366 - MIR3 SINE MIR -4 204 39 394 293 102 24 chr6 31226034 31226201 -151189041 - MIR SINE MIR -58 204 25 2218 112 24 0 chr6 31226232 31226528 -151188714 - AluSx SINE Alu -9 303 1 660 156 50 78 chr6 31226828 31226969 -151188273 + MER20 DNA MER1_type 1 137 -82 582 248 29 0 chr6 31226978 31227115 -151188127 - MER96 DNA MER1_type? -34 141 1 452 164 0 0 chr6 31227116 31227189 -151188053 + MER20 DNA MER1_type 126 198 -21 679 227 159 0 chr6 31227402 31227565 -151187677 - MER5A DNA MER1_type 0 189 1 458 266 110 7 chr6 31227583 31227737 -151187505 + MER5A DNA MER1_type 14 183 -6 280 294 121 43 chr6 31227995 31228226 -151187016 + L2 LINE L2 2809 3057 -256 537 152 76 0 chr6 31228227 31228319 -151186923 + L2 LINE L2 3214 3312 -1 192 325 35 53 chr6 31228786 31228900 -151186342 + MER5A DNA MER1_type 51 162 -27 774 244 26 30 chr6 31229125 31229359 -151185883 + MIR SINE MIR 6 238 -24 419 268 177 35 chr6 31229529 31229839 -151185403 + L3 LINE CR1 313 666 -911 402 299 0 16 chr6 31230166 31230293 -151184949 + MIR SINE MIR 84 208 -54 1039 269 153 60 chr6 31230449 31231170 -151184072 + L3 LINE CR1 781 1568 -9 218 191 0 24 chr6 31231373 31231415 -151183827 + GA-rich Low_complexity Low_complexity 1 41 0 4294 120 16 26 chr6 31231438 31231643 -151183599 + L1PA16 LINE L1 5332 5538 -628 2043 110 31 17 chr6 31231643 31231934 -151183308 + AluSc SINE Alu 1 295 -14 4294 120 16 26 chr6 31231934 31232419 -151182823 + L1PA16 LINE L1 5538 6143 -23 1675 152 55 10 chr6 31232432 31232721 -151182521 + AluJo SINE Alu 9 310 -2 4350 156 42 4 chr6 31232736 31233492 -151181750 + L1MB8 LINE L1 5386 6170 -8 1544 111 72 102 chr6 31233758 31233859 -151181383 + L1MA9 LINE L1 5990 6093 -219 848 158 0 0 chr6 31233859 31233979 -151181263 + FLAM_A SINE Alu 1 120 -13 1544 111 72 102 chr6 31233979 31234210 -151181032 + L1MA9 LINE L1 6092 6312 0 518 158 42 58 chr6 31234213 31234333 -151180909 + L1MB2 LINE L1 6052 6169 -2 248 366 112 12 chr6 31234378 31234629 -151180613 + L1MC/D LINE L1 5533 5808 -2000 195 321 0 0 chr6 31236578 31236634 -151178608 + MIR SINE MIR 92 147 -61 619 286 42 5 chr6 31236961 31237150 -151178092 + MIR SINE MIR 11 206 -56 204 40 0 0 chr6 31237603 31237628 -151177614 + (T)n Simple_repeat Simple_repeat 1 25 0 263 365 12 12 chr6 31238077 31238162 -151177080 + MIR SINE MIR 4 88 -174 855 306 25 4 chr6 31239973 31240215 -151175027 + MIR SINE MIR 12 258 -4 2585 130 23 32 chr6 31241071 31241510 -151173732 + LTR23 LTR ERV1 1 435 -2 402 162 0 0 chr6 31241510 31241584 -151173658 + (CA)n Simple_repeat Simple_repeat 2 75 0 1389 247 39 63 chr6 31241729 31241797 -151173445 + MLT1J LTR MaLR 1 69 -442 2409 98 0 0 chr6 31241797 31242104 -151173138 + AluSx SINE Alu 1 307 -5 1389 247 39 63 chr6 31242104 31242497 -151172745 + MLT1J LTR MaLR 69 451 -60 854 136 111 40 chr6 31242499 31242698 -151172544 - LTR7 LTR ERV1 0 450 238 382 194 125 119 chr6 31242766 31242874 -151172368 + MIR SINE MIR 88 199 -63 730 109 143 25 chr6 31242874 31242993 -151172249 + FLAM_A SINE Alu 1 133 0 382 194 125 119 chr6 31242993 31243044 -151172198 + MIR SINE MIR 199 248 -14 521 317 41 23 chr6 31244140 31244361 -151170881 + L3 LINE CR1 690 914 -663 950 197 115 18 chr6 31244438 31244656 -151170586 - MIR SINE MIR -14 248 10 628 308 181 33 chr6 31244826 31245139 -151170103 + L3 LINE CR1 932 1324 -253 1710 102 18 0 chr6 31245139 31245365 -151169877 + MER30 DNA MER1_type 1 230 0 628 308 181 33 chr6 31245365 31245470 -151169772 + L3 LINE CR1 1324 1412 -165 288 257 222 35 chr6 31245535 31245679 -151169563 + MIR SINE MIR 3 173 -89 321 256 108 72 chr6 31246196 31246473 -151168769 + MER31-int LTR ERV1 3173 3459 -1477 2109 103 55 0 chr6 31246506 31246796 -151168446 - AluSx SINE Alu -6 306 1 189 0 0 0 chr6 31246992 31247013 -151168229 + (TG)n Simple_repeat Simple_repeat 2 22 0 892 192 84 0 chr6 31247105 31247272 -151167970 + MER58A DNA MER1_type 38 218 -6 22 35 0 0 chr6 31247297 31247326 -151167916 + AT_rich Low_complexity Low_complexity 1 29 0 2176 120 0 3 chr6 31247618 31247917 -151167325 - AluSg SINE Alu -12 298 1 2053 103 65 3 chr6 31248085 31248377 -151166865 + AluSg SINE Alu 1 310 0 278 167 0 0 chr6 31250621 31250663 -151164579 + Tigger6 DNA MER2_type 1 42 -1041 2699 187 12 0 chr6 31250664 31251183 -151164059 + L1P LINE L1 4261 4785 -1361 709 190 45 34 chr6 31251377 31251556 -151163686 - L1P LINE L1 -2808 3338 3158 * 2121 150 0 8 chr6 31251538 31251898 -151163344 - L1P LINE L1 -3633 2513 2157 769 242 28 47 chr6 31251999 31252210 -151163032 + MER58A DNA MER1_type 1 207 -17 2572 53 0 3 chr6 31254123 31254424 -151160818 - AluY SINE Alu -11 300 1 224 333 73 10 chr6 31255140 31255236 -151160006 + L2 LINE L2 3142 3243 -29 939 226 0 0 chr6 31255398 31255575 -151159667 + MER5B DNA MER1_type 1 177 -1 190 339 0 16 chr6 31255596 31255658 -151159584 - L2 LINE L2 -5 3267 3207 1013 164 58 88 chr6 31255816 31256042 -151159200 - MER20 DNA MER1_type 0 219 1 230 152 22 22 chr6 31256069 31256115 -151159127 + MER5A DNA MER1_type 142 187 -2 657 206 213 0 chr6 31256129 31256284 -151158958 + MER5A DNA MER1_type 1 188 -1 206 379 8 8 chr6 31256822 31256946 -151158296 + L2 LINE L2 2665 2788 -526 241 191 0 0 chr6 31257289 31257331 -151157911 + MER96B DNA MER1_type? 194 235 -182 3148 136 19 35 chr6 31257473 31257881 -151157361 + MER41E LTR ERV1 5 405 -107 2384 81 0 3 chr6 31257881 31258178 -151157064 - AluY SINE Alu -15 296 1 3148 136 19 35 chr6 31258178 31258285 -151156957 + MER41E LTR ERV1 405 512 0 702 320 26 76 chr6 31258344 31258804 -151156438 + L2 LINE L2 2836 3272 0 231 170 20 140 chr6 31259404 31259504 -151155738 - L1MC4 LINE L1 -1341 6701 6614 286 278 0 11 chr6 31259506 31259596 -151155646 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 866 194 12 125 chr6 31259626 31259669 -151155573 - MER58A DNA MER1_type -2196 224 178 2401 80 0 7 chr6 31259669 31259969 -151155273 + AluSg SINE Alu 5 302 -8 866 194 12 125 chr6 31259969 31260009 -151155233 - MER58A DNA MER1_type -2242 178 135 2242 97 0 34 chr6 31260009 31260329 -151154913 - AluSc SINE Alu 0 309 1 866 194 12 125 chr6 31260329 31260492 -151154750 - MER58A DNA MER1_type -2285 135 5 375 23 0 0 chr6 31261706 31261750 -151153492 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1866 158 0 7 chr6 31261754 31262052 -151153190 - AluJo SINE Alu -16 296 1 216 0 0 0 chr6 31263059 31263083 -151152159 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 216 0 0 chr6 31263097 31263148 -151152094 + (TG)n Simple_repeat Simple_repeat 2 52 0 414 0 0 0 chr6 31263308 31263354 -151151888 + (CA)n Simple_repeat Simple_repeat 2 47 0 429 20 0 0 chr6 31264016 31264066 -151151176 + (TA)n Simple_repeat Simple_repeat 2 51 0 269 252 79 39 chr6 31264380 31264507 -151150735 - L1ME4a LINE L1 -31 6090 5959 395 303 52 58 chr6 31264574 31264729 -151150513 - L2 LINE L2 0 3272 3119 361 303 68 28 chr6 31265981 31266232 -151149010 + L2 LINE L2 2142 2402 -912 39 22 0 0 chr6 31266336 31266382 -151148860 + AT_rich Low_complexity Low_complexity 1 46 0 477 194 184 0 chr6 31266430 31266528 -151148714 + MLT1D LTR MaLR 3 118 -387 814 75 0 9 chr6 31266531 31266637 -151148605 - AluSg SINE Alu -205 105 1 826 176 110 47 chr6 31266637 31266988 -151148254 + MLT1D LTR MaLR 105 505 0 289 331 87 9 chr6 31267180 31267353 -151147889 - MIR SINE MIR -17 191 17 2358 157 45 17 chr6 31268432 31268852 -151146390 + MSTB1 LTR MaLR 1 432 0 300 339 37 95 chr6 31269065 31269307 -151145935 - L2 LINE L2 -3 3269 3042 29 0 0 0 chr6 31269517 31269546 -151145696 + AT_rich Low_complexity Low_complexity 1 29 0 224 232 0 14 chr6 31269572 31269641 -151145601 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 4681 182 20 12 chr6 31270022 31271236 -151144006 + L1MB7 LINE L1 4960 6184 0 486 262 35 99 chr6 31271705 31272018 -151143224 - MER102a DNA MER1_type -34 296 4 277 284 0 25 chr6 31272077 31272158 -151143084 - L3 LINE CR1 -10 1567 1489 358 310 23 23 chr6 31272444 31272573 -151142669 - MIR3 SINE MIR -13 195 67 2214 98 13 10 chr6 31274218 31274523 -151140719 - AluSx SINE Alu -2 310 5 1973 88 91 0 chr6 31275384 31275647 -151139595 + AluSx SINE Alu 6 292 -20 181 333 0 0 chr6 31275841 31275895 -151139347 + L2 LINE L2 3004 3057 -215 492 237 62 23 chr6 31276874 31277051 -151138191 - L1MC5 LINE L1 -492 7469 7286 708 241 83 60 chr6 31277174 31277543 -151137699 - L1MC4 LINE L1 -740 7221 6880 582 261 147 50 chr6 31277625 31277809 -151137433 + L1ME4a LINE L1 5548 5713 -408 2337 82 3 22 chr6 31277809 31278125 -151137117 + AluY SINE Alu 1 310 -1 582 261 147 50 chr6 31278125 31278445 -151136797 + L1ME4a LINE L1 5713 6101 -20 2272 110 0 7 chr6 31279172 31279480 -151135762 - AluSx SINE Alu -6 306 1 2972 106 10 2 chr6 31279707 31280114 -151135128 + L1PB1 LINE L1 5740 6149 -2 2103 166 32 6 chr6 31280394 31280807 -151134435 - L1ME1 LINE L1 -3 6163 5746 1761 151 17 3 chr6 31280859 31281151 -151134091 - AluJo SINE Alu 0 312 17 31 0 0 0 chr6 31285452 31285483 -151129759 + AT_rich Low_complexity Low_complexity 1 31 0 598 265 50 46 chr6 31286729 31286948 -151128294 + MIR SINE MIR 31 250 -12 298 186 0 119 chr6 31286972 31287090 -151128152 + MIR SINE MIR 109 212 -50 2221 85 0 4 chr6 31287328 31287609 -151127633 + AluSc SINE Alu 1 280 -29 1165 41 0 20 chr6 31287609 31287755 -151127487 + AluY SINE Alu 168 310 -1 1416 153 82 125 chr6 31288841 31289005 -151126237 + L1ME1 LINE L1 5779 5948 -218 2096 128 6 6 chr6 31289005 31289317 -151125925 - AluSp SINE Alu 0 313 2 1803 140 46 14 chr6 31289319 31289604 -151125638 - 7SLRNA srpRNA srpRNA -26 294 1 1416 153 82 125 chr6 31289604 31289836 -151125406 + L1ME1 LINE L1 5949 6161 -5 195 42 0 0 chr6 31289878 31289902 -151125340 + (TA)n Simple_repeat Simple_repeat 2 25 0 407 116 58 0 chr6 31290019 31290140 -151125102 + (TA)n Simple_repeat Simple_repeat 1 128 0 1475 169 8 19 chr6 31291259 31291526 -151123716 + AluJo SINE Alu 30 293 -19 2660 234 66 31 chr6 31291564 31292395 -151122847 - L1MC4a LINE L1 -840 6968 6109 25 31 0 0 chr6 31292395 31292427 -151122815 + AT_rich Low_complexity Low_complexity 1 32 0 1532 173 28 28 chr6 31294691 31294999 -151120243 - AluJo SINE Alu 0 308 1 181 189 0 27 chr6 31295370 31295407 -151119835 - L2 LINE L2 -34 3238 3203 * 599 289 14 24 chr6 31295377 31295588 -151119654 - MIR SINE MIR -34 228 20 21 0 0 0 chr6 31295945 31295966 -151119276 + AT_rich Low_complexity Low_complexity 1 21 0 557 226 222 29 chr6 31296187 31296462 -151118780 + L1MC4 LINE L1 7715 8042 0 476 294 5 64 chr6 31296536 31296556 -151118686 + MER117 DNA MER1_type 1 21 -176 3332 178 110 2 chr6 31296556 31297146 -151118096 + MLT1E1 LTR MaLR 1 654 0 476 294 5 64 chr6 31297146 31297312 -151117930 + MER117 DNA MER1_type 21 176 -21 2232 108 7 0 chr6 31298427 31298723 -151116519 - AluSq SINE Alu -15 298 1 656 282 40 67 chr6 31298842 31298892 -151116350 + Charlie8 DNA MER1_type 76 126 -2291 2310 99 7 0 chr6 31298892 31299195 -151116047 - AluSq SINE Alu -5 308 4 656 282 40 67 chr6 31299195 31299442 -151115800 + Charlie8 DNA MER1_type 126 365 -2052 435 233 0 0 chr6 31300731 31300821 -151114421 + L2 LINE L2 3224 3313 0 1531 185 73 0 chr6 31301133 31301420 -151113822 + AluJo SINE Alu 1 308 -4 226 300 136 0 chr6 31301949 31302112 -151113130 + MIR SINE MIR 4 192 -42 532 295 71 27 chr6 31302189 31302413 -151112829 + MIR SINE MIR 12 245 -17 338 221 47 47 chr6 31302424 31302510 -151112732 + MIR SINE MIR 68 153 -55 1372 155 9 0 chr6 31302533 31302746 -151112496 - MLT1D LTR MaLR 0 505 291 13210 176 17 69 chr6 31302989 31305303 -151109939 + L1PA16 LINE L1 2746 5181 -2423 1851 171 10 3 chr6 31305303 31305608 -151109634 - THE1B LTR MaLR 0 364 58 13210 176 17 69 chr6 31305608 31305760 -151109482 + L1PA16 LINE L1 5181 5339 -2265 1909 161 0 23 chr6 31305760 31306070 -151109172 + AluJo SINE Alu 3 305 -7 13210 176 17 69 chr6 31306070 31308488 -151106754 + L1PA16 LINE L1 5339 7604 0 211 362 14 43 chr6 31309793 31309931 -151105311 - MIR SINE MIR -11 251 118 764 238 116 11 chr6 31309966 31310155 -151105087 - MIR SINE MIR -51 211 3 247 331 69 8 chr6 31310266 31310396 -151104846 - MIR3 SINE MIR 0 208 71 197 344 102 6 chr6 31310643 31310800 -151104442 + L2 LINE L2 2358 2529 -785 3548 104 18 52 chr6 31310804 31311435 -151103807 - MER4B LTR ERV1 0 779 1 1695 222 110 81 chr6 31311657 31312377 -151102865 - LTR1B LTR ERV1 -85 741 1 382 320 62 6 chr6 31312892 31313070 -151102172 - MIR3 SINE MIR -1 207 20 274 280 57 117 chr6 31313466 31313554 -151101688 - L2 LINE L2 -50 3222 3130 1232 196 106 40 chr6 31313554 31313625 -151101617 - MER2 DNA MER2_type 0 344 279 2481 63 3 0 chr6 31313625 31313927 -151101315 + AluY SINE Alu 1 303 -8 1232 196 106 40 chr6 31313927 31314177 -151101065 - MER2 DNA MER2_type -65 279 2 274 280 57 117 chr6 31314177 31314474 -151100768 - L2 LINE L2 -142 3130 2860 263 270 0 0 chr6 31315028 31315091 -151100151 - MIR SINE MIR -10 252 190 515 211 200 0 chr6 31315193 31315288 -151099954 - MER81 DNA DNA 0 114 1 305 299 162 46 chr6 31315566 31315961 -151099281 + LTR67 LTR ERVL 105 545 -12 466 261 17 0 chr6 31316011 31316126 -151099116 + MER117 DNA MER1_type 47 163 -34 785 273 0 4 chr6 31317278 31317505 -151097737 + L1M4 LINE L1 4153 4378 -1768 1979 146 0 28 chr6 31317509 31317653 -151097589 + AluJo SINE Alu 1 148 -164 2568 62 0 3 chr6 31317653 31317958 -151097284 + AluY SINE Alu 1 304 -7 1979 146 0 28 chr6 31317958 31318134 -151097108 + AluJo SINE Alu 148 312 0 237 33 0 0 chr6 31318153 31318183 -151097059 + (CAA)n Simple_repeat Simple_repeat 1 30 0 498 338 57 9 chr6 31318348 31318587 -151096655 + MIR SINE MIR 10 259 -3 2050 180 189 2 chr6 31319004 31319398 -151095844 + MLT2B2 LTR ERVL 1 485 -30 479 71 47 0 chr6 31319398 31319483 -151095759 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 2050 180 189 2 chr6 31319483 31319522 -151095720 + MLT2B2 LTR ERVL 485 515 0 743 254 106 35 chr6 31319694 31319977 -151095265 + LTR16A1 LTR ERVL 155 457 0 1170 185 91 4 chr6 31320484 31320620 -151094622 - L1MA9 LINE L1 -4 6308 6185 405 103 0 0 chr6 31320620 31320688 -151094554 + (TG)n Simple_repeat Simple_repeat 1 68 0 1170 185 91 4 chr6 31320688 31320805 -151094437 - L1MA9 LINE L1 -127 6185 6033 1243 307 139 6 chr6 31321337 31321855 -151093387 - MLT1K LTR MaLR 0 588 2 1688 108 14 0 chr6 31322082 31322304 -151092938 + AluSp SINE Alu 1 225 -88 200 278 137 41 chr6 31322620 31322774 -151092468 - MIR SINE MIR -68 140 5 522 267 23 0 chr6 31322970 31323101 -151092141 + MER94 DNA DNA 1 134 0 290 246 29 0 chr6 31323412 31323481 -151091761 + MIR SINE MIR 79 149 -113 * 637 314 32 0 chr6 31323477 31323665 -151091577 - MIR SINE MIR -1 261 68 2324 118 0 0 chr6 31323785 31324089 -151091153 - AluSx SINE Alu -8 304 1 554 277 185 5 chr6 31324396 31324591 -151090651 + MIR SINE MIR 32 261 -1 2413 86 0 3 chr6 31324612 31324916 -151090326 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr6 31325213 31325235 -151090007 + AT_rich Low_complexity Low_complexity 1 22 0 225 296 0 42 chr6 31325575 31325646 -151089596 + MIR SINE MIR 85 152 -110 1086 65 0 0 chr6 31326103 31326242 -151089000 - AluY SINE Alu -11 300 162 180 0 0 0 chr6 31327999 31328019 -151087223 + (A)n Simple_repeat Simple_repeat 1 20 0 595 202 0 18 chr6 31328660 31328774 -151086468 + FLAM_A SINE Alu 4 115 -18 487 94 0 24 chr6 31328778 31328863 -151086379 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 213 237 0 0 chr6 31330234 31330293 -151084949 + (CA)n Simple_repeat Simple_repeat 2 60 0 15188 122 34 24 chr6 31330307 31331832 -151083410 - Tigger1 DNA MER2_type 0 2418 909 2598 86 12 3 chr6 31331832 31332169 -151083073 - L1PB1 LINE L1 0 6151 5812 6324 70 11 2 chr6 31332173 31333297 -151081945 - L1PA7 LINE L1 -3 6151 4955 15188 122 34 24 chr6 31333297 31334161 -151081081 - Tigger1 DNA MER2_type -1511 907 1 559 198 0 0 chr6 31334468 31334554 -151080688 - FRAM/FAM SINE Alu -98 78 1 1101 238 129 75 chr6 31334557 31334754 -151080488 - Charlie1a DNA MER1_type -2254 507 322 2475 75 0 0 chr6 31334754 31335061 -151080181 - AluY SINE Alu -2 309 3 1101 238 129 75 chr6 31335061 31335343 -151079899 - Charlie1a DNA MER1_type -2439 322 2 2325 99 13 0 chr6 31335346 31335649 -151079593 + AluSg SINE Alu 1 307 -3 1650 215 55 21 chr6 31335649 31336121 -151079121 - L1ME LINE L1 -350 5812 5297 1633 239 130 9 chr6 31336237 31336697 -151078545 - L1ME1 LINE L1 -19 6147 5632 2000 252 106 76 chr6 31336707 31337343 -151077899 - L1ME LINE L1 -982 5164 4549 2264 118 0 0 chr6 31337343 31337647 -151077595 + AluSx SINE Alu 1 304 -8 2000 252 106 76 chr6 31337647 31338259 -151076983 - L1ME LINE L1 -1597 4549 3861 1453 144 32 60 chr6 31338259 31338543 -151076699 - AluJb SINE Alu -34 278 3 2000 252 106 76 chr6 31338543 31338788 -151076454 - L1ME LINE L1 -2285 3861 3625 377 243 136 11 chr6 31339020 31339197 -151076045 - L2 LINE L2 -737 2577 2379 359 254 63 16 chr6 31339205 31339331 -151075911 - L2 LINE L2 -2305 1009 878 660 260 128 0 chr6 31340414 31340618 -151074624 - MIR SINE MIR -4 258 29 215 294 12 47 chr6 31341306 31341391 -151073851 - MIR3 SINE MIR -21 187 106 280 370 143 0 chr6 31341467 31341586 -151073656 - L2 LINE L2 -38 3234 3099 2208 105 7 3 chr6 31341682 31341986 -151073256 - AluSq SINE Alu -8 305 1 2058 121 4 0 chr6 31342343 31342624 -151072618 - AluSx SINE Alu -30 282 1 468 318 121 32 chr6 31343149 31343499 -151071743 + L1ME4a LINE L1 5473 5854 -267 356 201 187 30 chr6 31343557 31343691 -151071551 + L1ME4a LINE L1 5964 6118 -3 312 314 0 0 chr6 31343952 31344057 -151071185 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 31344118 31344139 -151071103 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 31344474 31344507 -151070735 + AT_rich Low_complexity Low_complexity 1 33 0 851 183 221 0 chr6 31345427 31345635 -151069607 + MIR SINE MIR 8 261 -1 295 299 131 19 chr6 31345806 31345913 -151069329 + MIR3 SINE MIR 15 133 -75 493 294 103 90 chr6 31346379 31346924 -151068318 - L2 LINE L2 -756 2558 2007 287 266 0 0 chr6 31347508 31347587 -151067655 + Charlie8 DNA MER1_type 74 152 -2265 313 268 24 39 chr6 31347809 31347936 -151067306 + HAL1 LINE L1 1464 1588 -919 236 255 57 78 chr6 31347979 31348171 -151067071 + HAL1 LINE L1 1761 1948 -559 23 54 0 0 chr6 31348467 31348504 -151066738 + AT_rich Low_complexity Low_complexity 1 37 0 913 275 29 8 chr6 31348573 31348817 -151066425 + MIR SINE MIR 10 258 -4 2243 107 3 0 chr6 31348920 31349218 -151066024 - AluSq SINE Alu -12 301 3 483 182 67 120 chr6 31349913 31350122 -151065120 + L1MC3 LINE L1 7581 7778 -7 330 132 0 0 chr6 31350122 31350175 -151065067 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 248 204 0 19 chr6 31352389 31352443 -151062799 + L2 LINE L2 3261 3313 0 270 0 0 0 chr6 31352797 31352827 -151062415 + (A)n Simple_repeat Simple_repeat 1 30 0 268 313 103 43 chr6 31352828 31353179 -151062063 + L2 LINE L2 2503 2874 -440 357 255 112 10 chr6 31353193 31353291 -151061951 + L2 LINE L2 3202 3309 -4 494 280 8 23 chr6 31353599 31353731 -151061511 + MER5A DNA MER1_type 60 189 0 534 269 141 22 chr6 31353945 31354088 -151061154 + MER112 DNA MER1_type 1 126 -134 225 94 0 0 chr6 31354088 31354120 -151061122 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 534 269 141 22 chr6 31354120 31354203 -151061039 + MER112 DNA MER1_type 126 254 -6 270 373 16 10 chr6 31354220 31354413 -151060829 - L2 LINE L2 -652 2662 2469 2320 104 0 0 chr6 31354936 31355234 -151060008 + AluSg SINE Alu 1 298 -12 531 322 55 5 chr6 31355827 31356029 -151059213 - MIR SINE MIR -27 235 24 2416 78 0 23 chr6 31356124 31356432 -151058810 + AluSq SINE Alu 1 301 -12 1296 174 5 9 chr6 31356483 31356725 -151058517 - AluJo SINE Alu 0 307 67 2133 113 7 3 chr6 31356735 31357028 -151058214 - AluSx SINE Alu -18 294 1 189 291 93 23 chr6 31357595 31357681 -151057561 + MIR SINE MIR 97 188 -74 240 302 176 14 chr6 31357759 31358054 -151057188 + L2 LINE L2 2484 2826 -488 1937 143 0 37 chr6 31359106 31359427 -151055815 + AluSx SINE Alu 2 310 -2 216 0 0 0 chr6 31359550 31359574 -151055668 + (T)n Simple_repeat Simple_repeat 1 24 0 3353 201 31 86 chr6 31359574 31360864 -151054378 - L1ME1 LINE L1 -36 6130 4933 1876 120 0 45 chr6 31360864 31361156 -151054086 + AluY SINE Alu 1 279 -32 3353 201 31 86 chr6 31361156 31361615 -151053627 - L1ME1 LINE L1 -1233 4933 4450 4068 154 72 89 chr6 31362541 31363268 -151051974 - Charlie5 DNA MER1_type -5 2619 1915 1603 192 67 88 chr6 31363268 31363743 -151051499 + MLT1C LTR MaLR 1 465 -2 4068 154 72 89 chr6 31363743 31364120 -151051122 - Charlie5 DNA MER1_type -709 1915 1533 489 265 83 28 chr6 31364197 31364378 -151050864 + MIR SINE MIR 2 192 -70 502 268 98 7 chr6 31365218 31365371 -151049871 + MIR SINE MIR 10 176 -86 1115 269 67 53 chr6 31365380 31365871 -151049371 - L2 LINE L2 0 3313 2816 248 0 31 0 chr6 31370483 31370515 -151044727 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 297 232 37 49 chr6 31371000 31371082 -151044160 + MER58B DNA MER1_type 1 81 -260 1273 185 23 8 chr6 31371101 31371366 -151043876 + MER58B DNA MER1_type 60 328 -13 967 237 40 4 chr6 31371466 31371719 -151043523 - L1PB4 LINE L1 -1 6155 5894 1783 163 67 9 chr6 31373737 31374080 -151041162 + MER47B DNA MER2_type 56 418 0 536 278 195 10 chr6 31374508 31374713 -151040529 + MIR SINE MIR 20 262 0 262 83 0 0 chr6 31374910 31374946 -151040296 - U2 snRNA snRNA -152 36 1 353 262 78 35 chr6 31375583 31375724 -151039518 + L1ME LINE L1 5409 5555 -566 204 40 0 0 chr6 31375782 31375807 -151039435 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 374 263 84 21 chr6 31376004 31376199 -151039043 - L1ME3A LINE L1 -232 5938 5733 751 199 0 0 chr6 31376273 31376404 -151038838 + FLAM_A SINE Alu 1 131 -2 226 299 120 11 chr6 31376449 31376723 -151038519 - L1ME3A LINE L1 -591 5587 5284 340 318 25 61 chr6 31376729 31376927 -151038315 - L1ME3A LINE L1 -869 5277 5087 363 237 11 0 chr6 31377351 31377444 -151037798 + L1MC4 LINE L1 2572 2665 -3481 3381 195 126 31 chr6 31377486 31377653 -151037589 + L1MC4 LINE L1 3807 3957 -2189 2362 91 7 0 chr6 31377653 31377950 -151037292 + AluSx SINE Alu 1 299 -13 3381 195 126 31 chr6 31377950 31378949 -151036293 + L1MC4 LINE L1 3957 5084 -1062 1704 172 0 4 chr6 31378978 31379245 -151035997 + AluJb SINE Alu 8 273 -39 320 189 116 0 chr6 31379352 31379447 -151035795 + L1MC4 LINE L1 5088 5193 -953 * 1394 217 125 17 chr6 31379444 31379924 -151035318 + L1MC4 LINE L1 5478 6009 -2033 * 1825 156 23 23 chr6 31379675 31380072 -151035170 + L1MB7 LINE L1 5767 6163 -21 216 261 0 0 chr6 31380076 31380141 -151035101 + GA-rich Low_complexity Low_complexity 2 66 0 30 0 0 0 chr6 31380244 31380274 -151034968 + AT_rich Low_complexity Low_complexity 1 30 0 505 299 51 56 chr6 31380654 31380888 -151034354 - MIR SINE MIR -29 233 1 1879 124 0 8 chr6 31381640 31381899 -151033343 - AluSq SINE Alu -56 257 1 314 272 98 54 chr6 31383525 31383709 -151031533 + L1MC4a LINE L1 5870 6061 -1747 5064 123 16 13 chr6 31383738 31384556 -151030686 + HSMAR2 DNA Mariner 263 1082 -220 2599 61 0 0 chr6 31384556 31384867 -151030375 + AluY SINE Alu 1 311 0 471 198 123 6 chr6 31385347 31385509 -151029733 - MER53 DNA DNA -8 181 1 840 272 15 42 chr6 31386556 31386817 -151028425 - MIR SINE MIR -4 258 5 475 186 8 25 chr6 31387086 31387204 -151028038 - MER53 DNA DNA -73 116 1 544 134 21 10 chr6 31387242 31387339 -151027903 + MER4A LTR ERV1 1 98 -566 1809 130 0 24 chr6 31387339 31387693 -151027549 + MER4A LTR ERV1 261 664 0 2310 76 104 51 chr6 31387696 31388353 -151026889 + MER4A-int LTR ERV1 1 807 -5791 315 49 0 0 chr6 31388354 31388395 -151026847 + (CA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 31388427 31388460 -151026782 + (A)n Simple_repeat Simple_repeat 1 33 0 253 75 0 50 chr6 31388478 31388518 -151026724 + LTR49 LTR ERV1 276 313 -282 7402 114 62 28 chr6 31388538 31389640 -151025602 + MER4A-int LTR ERV1 993 2056 -4542 2144 104 0 7 chr6 31389640 31389919 -151025323 + AluSq SINE Alu 1 277 -36 300 27 0 0 chr6 31389927 31389964 -151025278 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7402 114 62 28 chr6 31389964 31390305 -151024937 + MER4A-int LTR ERV1 2062 2495 -4103 1239 148 68 40 chr6 31390305 31390555 -151024687 - LTR8 LTR ERV1 -434 257 1 2615 126 69 71 chr6 31390555 31391000 -151024242 + MER4A-int LTR ERV1 2737 3181 -3417 2322 122 0 0 chr6 31391000 31391312 -151023930 + AluSx SINE Alu 1 312 0 2615 126 69 71 chr6 31391312 31391722 -151023520 + MER4A-int LTR ERV1 3181 3681 -2917 * 15475 97 56 19 chr6 31391721 31394383 -151020859 + MER4A-int LTR ERV1 3837 6596 -2 402 205 0 12 chr6 31394400 31394483 -151020759 + MER4A LTR ERV1 17 98 -566 1707 147 26 11 chr6 31394483 31394823 -151020419 + MER4A LTR ERV1 261 664 0 231 189 0 0 chr6 31395281 31395334 -151019908 + G-rich Low_complexity Low_complexity 4 56 0 258 160 0 0 chr6 31395488 31395538 -151019704 + (CA)n Simple_repeat Simple_repeat 2 51 0 462 49 0 0 chr6 31395619 31395680 -151019562 + (CA)n Simple_repeat Simple_repeat 1 61 0 22 56 0 0 chr6 31399949 31399985 -151015257 + AT_rich Low_complexity Low_complexity 1 36 0 428 219 66 70 chr6 31400072 31400194 -151015048 + MER96B DNA MER1_type? 191 313 -104 2306 112 0 0 chr6 31400194 31400499 -151014743 + AluSx SINE Alu 1 305 -7 428 219 66 70 chr6 31400499 31400604 -151014638 + MER96B DNA MER1_type? 313 417 0 272 208 0 0 chr6 31401282 31401335 -151013907 + L2 LINE L2 3261 3313 0 3122 220 30 53 chr6 31401408 31401666 -151013576 + L1M4 LINE L1 3039 3301 -2845 849 134 0 0 chr6 31401666 31401785 -151013457 + AluJo/FLAM SINE Alu 1 119 -183 1906 157 0 13 chr6 31401787 31402087 -151013155 + AluJb SINE Alu 4 299 -13 3122 220 30 53 chr6 31402087 31402821 -151012421 + L1M4 LINE L1 3302 4011 -2135 1135 260 3 24 chr6 31402821 31402960 -151012282 + AluJo SINE Alu 1 141 -171 2313 104 3 0 chr6 31402960 31403258 -151011984 + AluSx SINE Alu 2 300 -12 1135 260 3 24 chr6 31403258 31403406 -151011836 + AluJo SINE Alu 141 282 -30 207 88 0 0 chr6 31403409 31403443 -151011799 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 841 229 10 0 chr6 31403458 31403663 -151011579 + L1M4 LINE L1 4044 4250 -1896 * 1638 161 124 58 chr6 31403662 31404097 -151011145 + L1MC3 LINE L1 7134 7597 -188 1577 273 53 39 chr6 31404098 31404357 -151010885 + L1ME3A LINE L1 4132 4386 -1784 1948 89 19 0 chr6 31404357 31404616 -151010626 + AluSq SINE Alu 44 307 -6 1577 273 53 39 chr6 31404616 31406178 -151009064 + L1ME3A LINE L1 4386 5951 -219 1701 242 35 27 chr6 31406270 31407435 -151007807 + L1MB7 LINE L1 2969 4335 -1811 1210 228 188 73 chr6 31407755 31408204 -151007038 + L2 LINE L2 2334 2730 -583 1874 149 0 17 chr6 31408204 31408500 -151006742 - AluSx SINE Alu -21 291 1 1210 228 188 73 chr6 31408500 31408850 -151006392 + L2 LINE L2 2730 3295 -18 2390 98 3 13 chr6 31408850 31409165 -151006077 - AluSx SINE Alu 0 312 1 2043 125 4 0 chr6 31409522 31409803 -151005439 - AluSx SINE Alu -30 282 1 381 313 115 35 chr6 31410341 31410654 -151004588 + L1ME4a LINE L1 5488 5825 -296 303 190 181 35 chr6 31410754 31410870 -151004372 + L1ME4a LINE L1 5986 6118 -3 272 314 0 0 chr6 31411131 31411236 -151004006 + L1MC4a LINE L1 5793 5897 -1911 21 0 0 0 chr6 31411297 31411318 -151003924 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr6 31411653 31411686 -151003556 + AT_rich Low_complexity Low_complexity 1 33 0 2089 204 111 7 chr6 31412034 31412627 -151002615 + L1MB7 LINE L1 4395 5049 -1097 1397 222 108 34 chr6 31412632 31413132 -151002110 - LTR55 LTR ERV -3 545 9 529 117 0 0 chr6 31413135 31413212 -151002030 + MADE1 DNA Mariner 3 79 -1 3401 180 48 31 chr6 31413220 31413502 -151001740 + L1MB7 LINE L1 5046 5322 -862 809 172 0 8 chr6 31413502 31413636 -151001606 + FLAM_A SINE Alu 1 133 0 3401 180 48 31 chr6 31413636 31414463 -151000779 + L1MB7 LINE L1 5322 6184 0 344 217 105 66 chr6 31414470 31414622 -151000620 + L1ME3A LINE L1 6005 6162 -8 852 196 35 47 chr6 31415021 31415236 -151000006 - L1MD3 LINE L1 -9 7986 7770 186 43 0 0 chr6 31415236 31415259 -150999983 + (TG)n Simple_repeat Simple_repeat 2 24 0 852 196 35 47 chr6 31415259 31415312 -150999930 - L1MD3 LINE L1 -225 7770 6084 29 0 0 0 chr6 31416363 31416392 -150998850 + AT_rich Low_complexity Low_complexity 1 29 0 233 290 29 0 chr6 31416721 31416790 -150998452 - L2 LINE L2 -1 3312 3242 2513 146 166 42 chr6 31417305 31417855 -150997387 + LTR35 LTR ERV1 1 618 0 787 200 0 25 chr6 31418924 31419084 -150996158 + FRAM SINE Alu 7 162 -14 372 252 27 31 chr6 31419085 31419264 -150995978 - L1MD2 LINE L1 -167 6075 5894 661 303 173 30 chr6 31419356 31419963 -150995279 + L2 LINE L2 2001 2694 -620 496 190 60 0 chr6 31419977 31420077 -150995165 - L1MA2 LINE L1 0 6304 6199 3667 96 54 19 chr6 31420356 31421040 -150994202 + MER11A LTR ERVK 1 752 -484 43225 55 4 2 chr6 31421048 31427183 -150988059 + L1PA5 LINE L1 11 6152 -2 204 22 43 65 chr6 31427194 31427240 -150988002 + (TAA)n Simple_repeat Simple_repeat 1 45 0 376 113 0 84 chr6 31427243 31427314 -150987928 + MER11A LTR ERVK 912 976 -290 2300 78 6 58 chr6 31427323 31427670 -150987572 + MER11A LTR ERVK 937 1265 -1 371 263 135 46 chr6 31427679 31427795 -150987447 + L2 LINE L2 3008 3112 -160 2366 65 0 45 chr6 31427795 31428104 -150987138 - AluY SINE Alu -16 295 1 371 263 135 46 chr6 31428104 31428268 -150986974 + L2 LINE L2 3112 3272 0 411 21 0 0 chr6 31429589 31429637 -150985605 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 281 145 41 chr6 31529955 31530176 -150885066 + L2 LINE L2 1868 2111 -1203 314 198 62 37 chr6 31530189 31530270 -150884972 + L2 LINE L2 2214 2296 -1018 533 328 165 18 chr6 31530313 31530916 -150884326 + L2 LINE L2 2401 3085 -187 245 348 206 9 chr6 31531018 31531251 -150883991 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 31533276 31533340 -150881902 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 31533915 31534014 -150881228 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 31534169 31534196 -150881046 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 31534196 31534222 -150881020 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 31534222 31534430 -150880812 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 31535405 31535623 -150879619 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 31535656 31535963 -150879279 + AluSq SINE Alu 1 301 -12 1123 276 96 13 chr6 31536048 31536498 -150878744 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 31536548 31536665 -150878577 + L2 LINE L2 1705 1838 -1476 2092 141 3 3 chr6 31536761 31537067 -150878175 - AluSx SINE Alu -6 306 1 294 306 10 0 chr6 31537178 31537276 -150877966 - L1ME3A LINE L1 -208 5962 5864 2761 252 140 36 chr6 31537290 31537595 -150877647 + L2 LINE L2 1826 2098 -1215 2208 113 7 7 chr6 31537595 31537895 -150877347 - AluSx SINE Alu -12 300 1 2761 252 140 36 chr6 31537895 31538913 -150876329 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 31539449 31539555 -150875687 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 31539557 31539641 -150875601 - MIR SINE MIR 0 262 182 1843 167 14 10 chr6 31539641 31539935 -150875307 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 31539935 31540076 -150875166 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 31540509 31540557 -150874685 + MER91 DNA MER1_type 74 122 -18 374 357 7 0 chr6 31541669 31541823 -150873419 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 31541889 31541955 -150873287 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 31544030 31544065 -150871177 + GC_rich Low_complexity Low_complexity 1 35 0 1277 265 123 37 chr6 31546088 31546313 -150868929 + L1MB2 LINE L1 4494 4698 -1466 851 163 0 15 chr6 31546313 31546448 -150868794 + FLAM_A SINE Alu 1 133 0 1277 265 123 37 chr6 31546448 31546865 -150868377 + L1MB2 LINE L1 4698 5225 -939 2409 85 7 3 chr6 31546865 31547170 -150868072 + AluSg SINE Alu 1 306 -4 1277 265 123 37 chr6 31547170 31547418 -150867824 + L1MB2 LINE L1 5225 5450 -714 2942 128 66 80 chr6 31547419 31547852 -150867390 + L1MB2 LINE L1 5515 5952 -219 2212 120 13 0 chr6 31547852 31548151 -150867091 + AluSx SINE Alu 1 303 -9 2942 128 66 80 chr6 31548151 31548272 -150866970 + L1MB2 LINE L1 5952 6061 -110 2416 91 0 0 chr6 31548272 31548568 -150866674 + AluSg SINE Alu 1 296 -14 2942 128 66 80 chr6 31548568 31548675 -150866567 + L1MB2 LINE L1 6061 6168 -3 770 179 0 0 chr6 31548688 31548800 -150866442 + FLAM_C SINE Alu 6 117 -26 2701 213 66 18 chr6 31548800 31549523 -150865719 + L1ME3A LINE L1 5409 6162 -8 180 0 0 0 chr6 31549580 31549600 -150865642 + (TC)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr6 31551420 31551452 -150863790 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 31552103 31552392 -150862850 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 31552494 31552807 -150862435 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 31552819 31552868 -150862374 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 31553058 31553366 -150861876 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 31553473 31553859 -150861383 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 31553963 31554262 -150860980 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 31554306 31554441 -150860801 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 31554443 31554512 -150860730 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 31554538 31554744 -150860498 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 31554752 31555150 -150860092 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 31555150 31555434 -150859808 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 31555434 31555581 -150859661 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 31555581 31555885 -150859357 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 31555885 31556063 -150859179 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 31556059 31556363 -150858879 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 31556389 31556700 -150858542 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 31556700 31556832 -150858410 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 31556841 31557151 -150858091 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 31557151 31557700 -150857542 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 31557724 31558291 -150856951 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 31558307 31558360 -150856882 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 31558361 31558505 -150856737 + L1MA10 LINE L1 6215 6334 0 606 327 125 56 chr6 31560019 31560282 -150854960 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 31560282 31560559 -150854683 - AluJo SINE Alu -21 291 12 606 327 125 56 chr6 31560559 31561726 -150853516 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 31561900 31562206 -150853036 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 31562530 31562661 -150852581 - L2 LINE L2 -341 2973 2836 2340 99 7 0 chr6 31562832 31563136 -150852106 - AluSg SINE Alu -4 306 1 25 0 0 0 chr6 31563136 31563161 -150852081 + AT_rich Low_complexity Low_complexity 1 25 0 198 347 28 0 chr6 31563479 31563551 -150851691 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 31563555 31563862 -150851380 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 31563904 31564044 -150851198 + L2 LINE L2 2341 2481 -833 2427 100 0 3 chr6 31564044 31564355 -150850887 - AluSx SINE Alu -2 310 1 210 318 57 66 chr6 31564355 31564538 -150850704 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 31564577 31564999 -150850243 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 31565343 31565462 -150849780 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 31565651 31565680 -150849562 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 31566486 31566788 -150848454 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 31567089 31567163 -150848079 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 31567163 31567222 -150848020 - Tigger5 DNA MER2_type -2 2321 2263 2530 83 0 0 chr6 31567222 31567522 -150847720 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 31567540 31567597 -150847645 + Tigger5 DNA MER2_type 2266 2323 0 2772 23 3 7 chr6 31567831 31568140 -150847102 + AluY SINE Alu 1 308 -3 1923 165 0 7 chr6 31568433 31568736 -150846506 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 31568737 31568927 -150846315 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 31568944 31569125 -150846117 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 31569164 31569466 -150845776 - AluY SINE Alu -7 304 3 2583 69 0 0 chr6 31569816 31570121 -150845121 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 31570164 31570209 -150845033 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 31570460 31570758 -150844484 - AluJb SINE Alu -13 299 1 844 153 0 8 chr6 31572531 31572655 -150842587 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 31572673 31572877 -150842365 + AluJb SINE Alu 85 289 -23 1878 110 92 0 chr6 31574758 31575031 -150840211 + AluSx SINE Alu 1 298 -14 592 151 0 21 chr6 31575034 31575127 -150840115 + AluJ/FLAM SINE Alu 2 92 -220 2073 109 39 3 chr6 31575127 31575411 -150839831 + AluSp SINE Alu 1 294 -19 1507 139 9 22 chr6 31575412 31575642 -150839600 + AluSg/x SINE Alu 80 306 -4 2332 89 10 0 chr6 31575657 31575959 -150839283 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 31575959 31576113 -150839129 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 31576128 31576416 -150838826 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 31576438 31576529 -150838713 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 31576771 31577064 -150838178 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 31577142 31577378 -150837864 + AluY SINE Alu 63 298 -13 2196 148 7 0 chr6 31579302 31579612 -150835630 - AluSx SINE Alu 0 312 1 1566 163 63 53 chr6 31579612 31579911 -150835331 - AluJo SINE Alu -9 303 1 2161 103 21 7 chr6 31580784 31581075 -150834167 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 31581132 31581258 -150833984 + MIR SINE MIR 85 215 -47 208 51 26 26 chr6 31581273 31581312 -150833930 + (TA)n Simple_repeat Simple_repeat 1 39 0 2245 116 3 0 chr6 31581312 31581608 -150833634 - AluSx SINE Alu -12 300 1 876 165 0 0 chr6 31581824 31581957 -150833285 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 31582225 31582480 -150832762 - AluJo SINE Alu -16 296 43 271 274 21 21 chr6 31582491 31582586 -150832656 - L2 LINE L2 -285 2987 2893 226 297 65 65 chr6 31582668 31582806 -150832436 - L2 LINE L2 -547 2767 2630 2312 105 0 0 chr6 31582967 31583263 -150831979 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 31583680 31583962 -150831280 + AluSq SINE Alu 1 294 -19 2361 84 16 13 chr6 31583966 31584276 -150830966 - AluSq SINE Alu -2 311 1 2237 101 0 10 chr6 31584312 31584476 -150830766 - AluSc SINE Alu -14 295 134 2437 74 0 0 chr6 31584476 31584772 -150830470 - AluY SINE Alu -14 297 2 2237 101 0 10 chr6 31584772 31584905 -150830337 - AluSc SINE Alu -175 134 1 476 144 50 178 chr6 31585330 31585431 -150829811 + MER5A DNA MER1_type 31 143 -46 2285 123 0 19 chr6 31585431 31585749 -150829493 - AluSx SINE Alu 0 312 1 476 144 50 178 chr6 31585749 31585761 -150829481 + MER5A DNA MER1_type 143 155 -34 2504 84 6 0 chr6 31585761 31586072 -150829170 - AluSp SINE Alu 0 313 1 476 144 50 178 chr6 31586072 31586137 -150829105 + MER5A DNA MER1_type 155 187 -2 2101 96 53 0 chr6 31586222 31586503 -150828739 - AluSq SINE Alu -17 296 1 904 201 12 117 chr6 31586573 31586822 -150828420 - AluJo SINE Alu -89 223 1 1889 132 46 0 chr6 31586857 31587137 -150828105 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 31587137 31587428 -150827814 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 31587439 31587512 -150827730 - MIR SINE MIR -160 102 28 2143 108 0 7 chr6 31587853 31588141 -150827101 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 31590246 31590266 -150824976 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2609 63 0 0 chr6 31593338 31593638 -150821604 + AluY SINE Alu 1 300 -11 874 93 0 0 chr6 31594901 31595019 -150820223 + L1PB1 LINE L1 6017 6134 -17 2042 156 0 10 chr6 31595743 31596051 -150819191 - AluJb SINE Alu -7 305 1 2351 100 0 0 chr6 31596061 31596361 -150818881 - AluY SINE Alu -11 300 1 1800 154 25 44 chr6 31598787 31599105 -150816137 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 31601819 31601840 -150813402 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 31602452 31602487 -150812755 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr6 31602989 31603010 -150812232 + AT_rich Low_complexity Low_complexity 1 21 0 336 91 45 76 chr6 31606012 31606078 -150809164 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 31606677 31606975 -150808267 - AluSc SINE Alu -11 298 1 2624 68 0 0 chr6 31607795 31608105 -150807137 + AluY SINE Alu 1 310 -1 2308 106 0 0 chr6 31608335 31608627 -150806615 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 31608879 31609181 -150806061 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 31609228 31609348 -150805894 + L3 LINE CR1 1432 1555 -22 2238 113 0 10 chr6 31609421 31609721 -150805521 + AluSx SINE Alu 1 297 -15 2308 104 0 7 chr6 31610042 31610349 -150804893 + AluSg1 SINE Alu 3 307 -2 1656 133 118 11 chr6 31610845 31611124 -150804118 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 31611349 31611498 -150803744 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 31611529 31611818 -150803424 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 31611866 31612154 -150803088 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 31612971 31613168 -150802074 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 31613577 31613870 -150801372 + AluJb SINE Alu 1 297 -15 2203 131 0 0 chr6 31616364 31616661 -150798581 - AluSg SINE Alu -13 297 1 1920 153 10 0 chr6 31616661 31616955 -150798287 - AluJo SINE Alu -12 300 3 2100 143 0 3 chr6 31616997 31617298 -150797944 - AluSx SINE Alu -6 306 7 2482 59 7 0 chr6 31617315 31617603 -150797639 - AluY SINE Alu -21 290 1 2101 196 138 103 chr6 31617805 31617879 -150797363 - L2 LINE L2 -3 3310 3240 1532 131 0 18 chr6 31617879 31618108 -150797134 + AluJb SINE Alu 86 310 -2 2285 112 0 3 chr6 31618118 31618414 -150796828 + AluSx SINE Alu 6 300 -12 2152 138 0 3 chr6 31618415 31618727 -150796515 + AluSx SINE Alu 1 311 -1 2101 196 138 103 chr6 31618727 31618962 -150796280 - L2 LINE L2 -81 3232 3007 2369 48 41 14 chr6 31618962 31619253 -150795989 + AluY SINE Alu 1 299 -12 2134 139 7 0 chr6 31619257 31619559 -150795683 + AluJb SINE Alu 1 304 -8 2101 196 138 103 chr6 31619559 31619787 -150795455 - L2 LINE L2 -308 3005 2786 1496 118 164 11 chr6 31619787 31620049 -150795193 + AluSx SINE Alu 1 302 0 2187 120 10 0 chr6 31620054 31620346 -150794896 + AluSg SINE Alu 2 296 -14 2101 196 138 103 chr6 31620346 31620416 -150794826 - L2 LINE L2 -530 2783 2717 2048 116 20 30 chr6 31620416 31620717 -150794525 + AluSx SINE Alu 1 298 -14 2101 196 138 103 chr6 31620717 31621176 -150794066 - L2 LINE L2 -596 2717 2156 313 347 0 0 chr6 31621505 31621626 -150793616 + GA-rich Low_complexity Low_complexity 2 122 0 2255 102 0 3 chr6 31622016 31622310 -150792932 - AluSc SINE Alu -16 293 1 209 80 0 160 chr6 31622416 31622466 -150792776 + (A)n Simple_repeat Simple_repeat 1 42 0 2483 76 0 0 chr6 31622468 31622770 -150792472 + AluY SINE Alu 3 304 -7 1621 253 98 12 chr6 31622998 31623076 -150792166 - L2 LINE L2 -1193 2121 2051 2273 98 34 0 chr6 31623076 31623373 -150791869 + AluSx SINE Alu 1 307 -5 1621 253 98 12 chr6 31623373 31623868 -150791374 - L2 LINE L2 -1263 2051 1499 246 319 101 32 chr6 31623916 31624062 -150791180 - L2 LINE L2 -201 3071 2908 2512 77 0 6 chr6 31624062 31624375 -150790867 + AluY SINE Alu 1 311 0 246 319 101 32 chr6 31624375 31624416 -150790826 - L2 LINE L2 -364 2908 2871 2077 130 37 0 chr6 31624561 31624860 -150790382 - AluSx SINE Alu -2 310 1 389 280 223 0 chr6 31624930 31625105 -150790137 - MIR SINE MIR 0 262 49 852 114 0 0 chr6 31625127 31625241 -150790001 - AluJb SINE Alu -9 303 190 1565 123 0 0 chr6 31625243 31625455 -150789787 + AluSg/x SINE Alu 84 295 -17 2315 91 0 0 chr6 31625455 31625740 -150789502 + AluSc SINE Alu 1 285 -24 1559 92 0 0 chr6 31625741 31625936 -150789306 - AluY SINE Alu -116 195 1 582 87 11 43 chr6 31625936 31626028 -150789214 - AluJo SINE Alu -166 146 58 1946 115 86 0 chr6 31626060 31626329 -150788913 - AluSx SINE Alu -20 292 1 621 85 11 0 chr6 31626335 31626429 -150788813 - AluY SINE Alu -14 297 203 202 299 38 18 chr6 31626456 31626570 -150788672 + MIR SINE MIR 15 131 -77 2158 128 7 3 chr6 31626733 31627037 -150788205 - AluSx SINE Alu -5 307 3 771 200 70 0 chr6 31627039 31627224 -150788018 - L1M4 LINE L1 -748 5398 5201 2648 61 0 3 chr6 31627224 31627536 -150787706 - AluY SINE Alu 0 311 1 1589 113 18 51 chr6 31627536 31627611 -150787631 + Tigger3(Golem) DNA MER2_type 2765 2841 -188 1886 145 10 30 chr6 31627611 31627915 -150787327 + AluJb SINE Alu 1 298 -14 1589 113 18 51 chr6 31627915 31628113 -150787129 + Tigger3(Golem) DNA MER2_type 2841 3029 0 330 67 0 0 chr6 31628864 31628909 -150786333 + (CA)n Simple_repeat Simple_repeat 1 45 0 2488 98 0 0 chr6 31630126 31630433 -150784809 + AluSx SINE Alu 1 307 -5 203 333 0 13 chr6 31631195 31631273 -150783969 + CT-rich Low_complexity Low_complexity 3 79 0 2372 95 0 0 chr6 31632985 31633279 -150781963 - AluSc SINE Alu -15 294 1 198 0 0 0 chr6 31634495 31634517 -150780725 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 2377 77 0 10 chr6 31636165 31636465 -150778777 - AluSg SINE Alu -13 297 1 2395 73 7 3 chr6 31636490 31636793 -150778449 + AluSx SINE Alu 1 304 -8 2455 87 0 0 chr6 31636848 31637148 -150778094 + AluSc SINE Alu 1 300 -9 2118 110 27 10 chr6 31637875 31638176 -150777066 + AluSx SINE Alu 1 306 -6 2319 82 4 0 chr6 31638270 31638551 -150776691 + AluSg SINE Alu 1 282 -28 1222 76 0 19 chr6 31638551 31638709 -150776533 + AluSg/x SINE Alu 156 310 -2 2110 106 7 0 chr6 31639275 31639549 -150775693 - AluSx SINE Alu -14 298 23 226 171 73 0 chr6 31639692 31639733 -150775509 + L2 LINE L2 3261 3304 -9 1771 162 30 0 chr6 31639735 31640006 -150775236 + AluSx SINE Alu 1 279 -33 342 0 0 0 chr6 31640006 31640044 -150775198 + (CA)n Simple_repeat Simple_repeat 1 38 0 430 306 106 0 chr6 31640173 31640333 -150774909 - MER5B DNA MER1_type 0 178 2 1076 198 136 29 chr6 31641188 31641461 -150773781 - AluJo SINE Alu 0 302 1 2085 90 24 7 chr6 31641630 31641920 -150773322 + AluSq SINE Alu 2 296 -17 223 210 270 70 chr6 31641922 31642022 -150773220 + L2 LINE L2 3191 3310 -3 2059 105 59 3 chr6 31642077 31642363 -150772879 + AluSg SINE Alu 1 302 -8 1041 249 118 32 chr6 31645205 31645856 -150769386 + L2 LINE L2 2612 3308 -5 2006 118 29 46 chr6 31645915 31646051 -150769191 + AluSx SINE Alu 2 139 -173 2296 100 3 3 chr6 31646051 31646352 -150768890 + AluSx SINE Alu 1 301 -11 2006 118 29 46 chr6 31646352 31646521 -150768721 + AluSx SINE Alu 139 302 -10 2125 133 0 0 chr6 31646683 31646977 -150768265 - AluSx SINE Alu -18 294 1 2307 98 0 20 chr6 31648386 31648691 -150766551 + AluSg SINE Alu 1 299 -11 1463 77 22 0 chr6 31648700 31648882 -150766360 - AluYa5 SINE Alu -20 291 106 2417 52 0 21 chr6 31648882 31649173 -150766069 - AluY SINE Alu -26 285 1 632 271 43 132 chr6 31649730 31650221 -150765021 - L3 LINE CR1 -3 1574 1128 1489 149 47 68 chr6 31651097 31651230 -150764012 + AluJo SINE Alu 1 135 -177 2280 110 7 3 chr6 31651230 31651530 -150763712 + AluSx SINE Alu 1 301 -11 2388 102 0 0 chr6 31651535 31651830 -150763412 + AluSc SINE Alu 1 295 -14 1489 149 47 68 chr6 31651830 31651986 -150763256 + AluJo SINE Alu 139 290 -22 2275 112 23 0 chr6 31651992 31652296 -150762946 + AluSx SINE Alu 1 311 -1 619 325 41 0 chr6 31653765 31654033 -150761209 + Tigger8 DNA MER2_type 178 456 -210 231 365 52 9 chr6 31654097 31654212 -150761030 + Tigger8 DNA MER2_type 547 666 0 2302 107 0 0 chr6 31654320 31654609 -150760633 + AluSq SINE Alu 5 293 -20 252 223 98 0 chr6 31654783 31654895 -150760347 + L1MC4 LINE L1 6976 7098 -944 * 494 287 75 91 chr6 31654891 31655091 -150760151 + L1MC4 LINE L1 6960 7162 -880 2477 70 7 0 chr6 31655091 31655389 -150759853 + AluY SINE Alu 1 300 -11 494 287 75 91 chr6 31655389 31656157 -150759085 + L1MC4 LINE L1 7162 8031 -11 2182 131 0 0 chr6 31656158 31656448 -150758794 + AluSx SINE Alu 1 290 -22 2293 100 3 7 chr6 31656611 31656910 -150758332 + AluSp SINE Alu 1 298 -15 2150 118 6 25 chr6 31656931 31657246 -150757996 + AluSc SINE Alu 1 309 0 1679 110 121 4 chr6 31657265 31657529 -150757713 + AluSg SINE Alu 1 295 -5 1999 87 4 0 chr6 31659182 31659424 -150755818 - AluSg SINE Alu -65 245 3 1410 155 5 5 chr6 31659551 31659764 -150755478 - AluJb SINE Alu -99 213 1 1641 161 9 47 chr6 31659810 31660132 -150755110 + AluJb SINE Alu 1 310 -2 185 161 179 36 chr6 31660159 31660215 -150755027 + MER5A DNA MER1_type 126 189 0 315 229 66 102 chr6 31660961 31661127 -150754115 - L2 LINE L2 -3 3310 3151 2294 105 0 0 chr6 31661217 31661513 -150753729 + AluSx SINE Alu 1 296 -16 1633 138 51 55 chr6 31661720 31661909 -150753333 + AluJb SINE Alu 1 190 -122 2347 95 0 29 chr6 31661909 31662215 -150753027 - AluSg SINE Alu -13 297 1 1633 138 51 55 chr6 31662215 31662336 -150752906 + AluJb SINE Alu 190 310 -2 2114 120 3 29 chr6 31662481 31662790 -150752452 - AluSx SINE Alu -11 301 1 2543 71 0 0 chr6 31663305 31663601 -150751641 - AluY SINE Alu -15 296 1 294 245 179 0 chr6 31663877 31663983 -150751259 - L2 LINE L2 -2 3311 3187 1885 148 0 0 chr6 31665365 31665656 -150749586 + AluSx SINE Alu 20 310 0 381 288 57 57 chr6 31665657 31665690 -150749552 - MIR SINE MIR -71 191 159 2248 126 0 0 chr6 31665690 31665992 -150749250 - AluSx SINE Alu -10 302 1 1636 153 3 63 chr6 31665994 31666158 -150749084 - AluJo SINE Alu -18 294 155 2594 50 0 10 chr6 31666158 31666458 -150748784 - AluY SINE Alu -14 297 1 1636 153 3 63 chr6 31666458 31666594 -150748648 - AluJo SINE Alu -157 155 12 381 288 57 57 chr6 31666594 31666734 -150748508 - MIR SINE MIR -103 159 15 266 303 0 11 chr6 31666787 31666876 -150748366 + MIR3 SINE MIR 103 190 -18 852 131 15 0 chr6 31668328 31668458 -150746784 + FLAM_C SINE Alu 2 133 0 317 223 193 62 chr6 31668514 31668584 -150746658 + L2 LINE L2 2719 2778 -535 2361 80 3 10 chr6 31668584 31668884 -150746358 + AluSc SINE Alu 1 298 -11 317 223 193 62 chr6 31668884 31669245 -150745997 + L2 LINE L2 2778 3187 -126 2343 98 13 0 chr6 31669261 31669568 -150745674 + AluSx SINE Alu 1 311 -1 225 237 0 0 chr6 31672467 31672526 -150742716 + G-rich Low_complexity Low_complexity 2 60 0 201 121 0 0 chr6 31673490 31673523 -150741719 + (CTG)n Simple_repeat Simple_repeat 3 35 0 244 220 9 28 chr6 31674941 31675050 -150740192 + GA-rich Low_complexity Low_complexity 3 109 0 21 0 0 0 chr6 31675060 31675081 -150740161 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr6 31678808 31678835 -150736407 + GC_rich Low_complexity Low_complexity 1 27 0 277 206 41 14 chr6 31679355 31679428 -150735814 - MIR3 SINE MIR -28 180 106 2344 43 40 7 chr6 31679688 31679988 -150735254 + AluY SINE Alu 2 311 0 475 298 39 17 chr6 31680021 31680202 -150735040 + LTR33 LTR ERVL 329 513 -8 227 151 0 10 chr6 31680265 31680512 -150734730 + AluSx SINE Alu 1 300 -1 2158 98 3 0 chr6 31680660 31680955 -150734287 + AluSx SINE Alu 1 296 -16 2265 93 0 0 chr6 31680957 31681259 -150733983 + AluSg SINE Alu 1 302 -8 2332 87 6 0 chr6 31681261 31681572 -150733670 + AluSp SINE Alu 1 313 0 1447 155 65 0 chr6 31681863 31682108 -150733134 - AluJo SINE Alu -18 294 34 2192 87 0 14 chr6 31682129 31682446 -150732796 - AluSq SINE Alu 0 313 1 2286 162 15 96 chr6 31682451 31682542 -150732700 - L1MB5 LINE L1 -37 6137 6040 2020 113 10 0 chr6 31682542 31682833 -150732409 - AluSq SINE Alu -19 294 1 2286 162 15 96 chr6 31682833 31683250 -150731992 - L1MB5 LINE L1 -134 6040 5591 1726 157 54 27 chr6 31683250 31683404 -150731838 - AluJb SINE Alu 0 302 154 1989 114 3 29 chr6 31683404 31683569 -150731673 - AluSx SINE Alu -14 298 130 2094 104 0 0 chr6 31683569 31683875 -150731367 - AluSc SINE Alu 0 309 3 1920 92 57 7 chr6 31683879 31684162 -150731080 - AluSp SINE Alu -16 297 1 1989 114 3 29 chr6 31684162 31684297 -150730945 - AluSx SINE Alu -185 127 1 1726 157 54 27 chr6 31684297 31684436 -150730806 - AluJb SINE Alu -148 154 1 2286 162 15 96 chr6 31684436 31684519 -150730723 - L1MB5 LINE L1 -582 5592 5593 2038 121 0 16 chr6 31685309 31685622 -150729620 - AluSx SINE Alu -4 308 1 2274 89 0 3 chr6 31685678 31685981 -150729261 - AluSc SINE Alu -7 302 1 2167 110 0 0 chr6 31685981 31686273 -150728969 - AluSx SINE Alu -20 292 1 1615 162 21 0 chr6 31686273 31686557 -150728685 - AluJb SINE Alu -18 294 5 712 157 14 0 chr6 31686562 31686690 -150728552 - L1MB5 LINE L1 -573 5607 5467 1752 158 10 0 chr6 31686696 31686987 -150728255 + AluJb SINE Alu 1 294 -18 1466 118 0 0 chr6 31686987 31687190 -150728052 + AluSx SINE Alu 1 203 -109 1174 124 4 161 chr6 31687190 31687463 -150727779 + AluSg/x SINE Alu 67 296 -14 198 247 91 39 chr6 31687620 31687697 -150727545 - MIR3 SINE MIR -41 167 87 188 35 35 0 chr6 31688048 31688077 -150727165 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2064 59 37 75 chr6 31688570 31688892 -150726350 + AluY SINE Alu 1 310 -1 2230 83 7 0 chr6 31688909 31689198 -150726044 + AluSc SINE Alu 1 291 -18 706 295 63 35 chr6 31689198 31689690 -150725552 + L1MC5 LINE L1 7289 7794 -167 2331 62 19 10 chr6 31689758 31690066 -150725176 + AluY SINE Alu 1 311 0 2172 84 7 19 chr6 31693975 31694108 -150721134 + AluSg SINE Alu 3 136 -174 2445 52 3 3 chr6 31694108 31694414 -150720828 + AluY SINE Alu 1 306 -5 2172 84 7 19 chr6 31694414 31694588 -150720654 + AluSg SINE Alu 136 306 -4 1030 137 30 12 chr6 31694588 31694756 -150720486 + AluSg/x SINE Alu 134 304 -8 323 164 0 15 chr6 31696128 31696195 -150719047 + GA-rich Low_complexity Low_complexity 5 70 0 1656 166 19 35 chr6 31696342 31696656 -150718586 + AluJb SINE Alu 4 312 0 265 139 93 0 chr6 31696700 31696775 -150718467 + Alu SINE Alu 235 313 0 1394 153 84 8 chr6 31696823 31697084 -150718158 - AluJo SINE Alu -31 281 1 398 56 0 0 chr6 31697085 31697139 -150718103 - L1MA7 LINE L1 -461 5830 5777 3183 132 27 0 chr6 31697144 31697661 -150717581 - L1MA4 LINE L1 -1 6299 5769 916 202 17 0 chr6 31697661 31697828 -150717414 - AluSg/x SINE Alu -24 288 119 2114 129 0 0 chr6 31697853 31698156 -150717086 - AluSx SINE Alu -9 303 1 2176 118 3 0 chr6 31698160 31698464 -150716778 - AluSp SINE Alu -8 305 1 540 92 25 0 chr6 31698469 31698568 -150716674 - L1P5 LINE L1 -375 5781 5675 644 237 8 0 chr6 31698614 31698745 -150716497 - AluJo SINE Alu -103 209 78 315 250 16 0 chr6 31698745 31698809 -150716433 + MER2 DNA MER2_type 281 345 0 1639 140 23 8 chr6 31698860 31699124 -150716118 + AluSx SINE Alu 1 268 -44 228 352 56 24 chr6 31701174 31701299 -150713943 + L2 LINE L2 3144 3272 0 801 142 8 0 chr6 31702133 31702260 -150712982 - L1MB3 LINE L1 -1 6182 6055 1734 179 3 16 chr6 31702271 31702583 -150712659 - AluJo SINE Alu -4 308 1 1914 136 0 7 chr6 31703108 31703402 -150711840 - AluSx SINE Alu -16 296 5 551 233 31 25 chr6 31703489 31703648 -150711594 - MIR SINE MIR 0 262 103 232 295 133 57 chr6 31703705 31703987 -150711255 + L2 LINE L2 2707 3030 -242 2087 89 41 0 chr6 31703987 31704279 -150710963 - AluSx SINE Alu -8 304 1 197 337 67 11 chr6 31704492 31704581 -150710661 - L2 LINE L2 -17 3296 3203 2324 81 0 31 chr6 31705756 31706079 -150709163 - AluSp SINE Alu 0 313 1 2294 68 3 0 chr6 31706086 31706379 -150708863 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 31706491 31706577 -150708665 - MIR SINE MIR -66 142 56 1013 62 8 0 chr6 31706731 31706861 -150708381 + AluY SINE Alu 2 132 -179 187 323 115 15 chr6 31706949 31707079 -150708163 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 31709176 31709223 -150706019 + GC_rich Low_complexity Low_complexity 1 47 0 1235 145 7 86 chr6 31709653 31709922 -150705320 + AluJo SINE Alu 40 287 -25 2330 78 3 0 chr6 31709930 31710238 -150705004 + AluSc SINE Alu 1 309 0 373 198 0 55 chr6 31712256 31712347 -150702895 + L2 LINE L2 3225 3310 -3 912 142 231 4 chr6 31713304 31713529 -150701713 - MER2 DNA MER2_type -36 309 34 407 232 49 0 chr6 31713620 31713702 -150701540 - FRAM SINE Alu -79 97 12 275 239 57 34 chr6 31713817 31713905 -150701337 + MER5A DNA MER1_type 18 107 -82 1244 143 39 149 chr6 31714023 31714319 -150700923 + AluJb SINE Alu 3 259 -43 1993 121 13 10 chr6 31714319 31714624 -150700618 - AluSx SINE Alu -6 306 1 1244 143 39 149 chr6 31714624 31714663 -150700579 + AluJb SINE Alu 259 301 -1 891 209 0 0 chr6 31714995 31715153 -150700089 - FRAM SINE Alu -16 160 3 2024 128 7 13 chr6 31715166 31715470 -150699772 - AluSx SINE Alu -10 302 1 2148 125 3 0 chr6 31716231 31716535 -150698707 - AluSx SINE Alu -7 305 1 2238 88 10 0 chr6 31716545 31716842 -150698400 - AluY SINE Alu -9 302 3 2155 110 0 13 chr6 31716844 31717145 -150698097 - AluSx SINE Alu -15 297 1 715 252 67 21 chr6 31717155 31717393 -150697849 - MIR SINE MIR -10 252 4 236 341 171 5 chr6 31717479 31717696 -150697546 + MIR SINE MIR 7 259 -3 2205 99 3 3 chr6 31718969 31719273 -150695969 + AluSx SINE Alu 1 304 -8 2145 124 13 10 chr6 31719737 31720035 -150695207 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 31720126 31720418 -150694824 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 31720648 31720799 -150694443 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 31720799 31721102 -150694140 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 31721102 31721225 -150694017 - HAL1 LINE L1 -859 1648 1532 2287 121 3 0 chr6 31721225 31721531 -150693711 + AluSq SINE Alu 1 307 -6 1910 171 23 3 chr6 31721535 31721839 -150693403 + AluJb SINE Alu 1 310 -2 1027 279 73 31 chr6 31721839 31722009 -150693233 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 31722076 31722373 -150692869 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 31722514 31722706 -150692536 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 31722712 31722939 -150692303 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 31722939 31722959 -150692283 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 31722959 31723099 -150692143 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 31723099 31723434 -150691808 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 31723434 31723715 -150691527 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 31723735 31724048 -150691194 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 31724071 31724181 -150691061 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 31724210 31724274 -150690968 + AluY SINE Alu 232 295 -16 297 250 0 0 chr6 31724284 31724344 -150690898 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 31724362 31724659 -150690583 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 31724662 31724934 -150690308 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 31724948 31724974 -150690268 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 495 87 0 0 chr6 31724975 31725044 -150690198 + (TCCG)n Simple_repeat Simple_repeat 2 70 0 1891 127 33 11 chr6 31725057 31725332 -150689910 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 31725365 31725707 -150689535 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 31725770 31725865 -150689377 - MIR3 SINE MIR -41 167 71 398 228 154 86 chr6 31725891 31726053 -150689189 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 31726212 31726833 -150688409 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 31726930 31727093 -150688149 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 31727137 31727442 -150687800 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 31727442 31727736 -150687506 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 31728609 31728631 -150686611 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 31728631 31728861 -150686381 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 31732599 31732613 -150682629 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 31732613 31732861 -150682381 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 31732861 31732971 -150682271 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 31732971 31733033 -150682209 - AluSc SINE Alu -250 63 2 2217 132 3 0 chr6 31733237 31733592 -150681650 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 31733640 31733746 -150681496 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 31733746 31733769 -150681473 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 31733769 31733813 -150681429 + L1M1 LINE L1 5788 5832 -468 1682 139 73 7 chr6 31734153 31734316 -150680926 - AluJb SINE Alu -14 298 108 423 0 0 0 chr6 31734316 31734363 -150680879 + (TA)n Simple_repeat Simple_repeat 1 47 0 1682 139 73 7 chr6 31734363 31734473 -150680769 - AluJb SINE Alu -204 108 7 233 196 0 0 chr6 31734666 31734712 -150680530 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 31734768 31735080 -150680162 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 31735124 31735380 -150679862 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 31735829 31735910 -150679332 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 31737141 31737350 -150677892 + L2 LINE L2 3098 3305 -8 368 287 156 0 chr6 31737897 31738064 -150677178 + MIR SINE MIR 49 241 -21 1948 136 0 4 chr6 31738330 31738633 -150676609 - AluJo SINE Alu 0 316 15 21 0 0 0 chr6 31738646 31738667 -150676575 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 31738671 31738965 -150676277 + AluSg SINE Alu 1 293 -17 1956 81 58 8 chr6 31738965 31739225 -150676017 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 31739515 31739549 -150675693 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 31739668 31739758 -150675484 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 31739996 31740064 -150675178 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 31741473 31741767 -150673475 + AluSq SINE Alu 1 297 -16 298 283 6 31 chr6 31741883 31741904 -150673338 - L1MA10 LINE L1 0 6334 6314 2267 216 39 21 chr6 31741904 31742149 -150673093 - L1ME1 LINE L1 -8 6158 5919 2349 96 27 0 chr6 31742149 31742450 -150672792 + AluSq SINE Alu 1 309 -4 2267 216 39 21 chr6 31742450 31742773 -150672469 - L1ME1 LINE L1 -247 5919 5580 229 158 0 0 chr6 31742774 31742812 -150672430 + Alu SINE Alu 2 39 -260 1168 112 7 0 chr6 31742812 31742964 -150672278 - AluSx SINE Alu -159 153 1 1493 173 12 4 chr6 31742967 31743215 -150672027 + AluJb SINE Alu 50 299 -13 2289 90 30 7 chr6 31743216 31743515 -150671727 + AluSg SINE Alu 1 306 -4 2250 75 3 14 chr6 31743921 31744236 -150671006 - AluY SINE Alu 0 313 2 442 314 63 37 chr6 31744238 31744429 -150670813 - MIR SINE MIR -38 224 29 187 268 0 0 chr6 31744449 31744490 -150670752 + MIR SINE MIR 21 61 -201 2282 126 0 0 chr6 31744493 31744803 -150670439 - AluSg SINE Alu 0 310 1 1620 193 0 39 chr6 31744803 31745107 -150670135 - AluJo SINE Alu -17 295 3 256 351 146 0 chr6 31745112 31745277 -150669965 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 31745794 31745819 -150669423 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 920 199 24 15 chr6 31745845 31745876 -150669366 - MER3 DNA MER1_type 0 209 180 2261 115 0 7 chr6 31745876 31746045 -150669197 - AluSx SINE Alu -10 302 134 2407 74 0 7 chr6 31746045 31746362 -150668880 - AluY SINE Alu 0 311 2 2261 115 0 7 chr6 31746362 31746496 -150668746 - AluSx SINE Alu -178 134 1 920 199 24 15 chr6 31746496 31746670 -150668572 - MER3 DNA MER1_type -29 180 2 428 144 0 56 chr6 31747591 31747681 -150667561 - AluJ/FRAM SINE Alu -8 304 220 1444 175 20 4 chr6 31747938 31748184 -150667058 - AluJo SINE Alu -62 250 1 2440 79 7 0 chr6 31748614 31748918 -150666324 - AluSp SINE Alu -7 306 1 305 276 31 24 chr6 31748976 31749103 -150666139 - LTR67 LTR ERVL -17 540 413 273 299 41 10 chr6 31749549 31749646 -150665596 + MIR SINE MIR 156 255 -7 477 251 37 55 chr6 31749671 31749778 -150665464 - MER63A DNA MER1_type -1478 210 103 2568 163 124 67 chr6 31749778 31749878 -150665364 - MER39 LTR ERV1 0 707 614 1736 189 33 0 chr6 31749878 31750179 -150665063 - AluJb SINE Alu -1 311 1 2568 163 124 67 chr6 31750179 31750296 -150664946 - MER39 LTR ERV1 -93 614 505 2367 116 0 0 chr6 31750296 31750599 -150664643 + AluSx SINE Alu 1 303 -9 2568 163 124 67 chr6 31750599 31750631 -150664611 - MER39 LTR ERV1 -202 505 476 2559 77 3 0 chr6 31750631 31750941 -150664301 + AluSp SINE Alu 1 311 -2 2568 163 124 67 chr6 31750941 31751358 -150663884 - MER39 LTR ERV1 -231 476 1 477 251 37 55 chr6 31751358 31751413 -150663829 - MER63A DNA MER1_type -1585 103 51 729 317 147 18 chr6 31751512 31751894 -150663348 - MLT1J LTR MaLR -6 505 75 198 319 66 56 chr6 31752058 31752312 -150662930 - L2 LINE L2 -470 2844 2585 8177 64 5 7 chr6 31752312 31753386 -150661856 - MER11C LTR ERVK 0 1071 1 198 319 66 56 chr6 31753386 31753419 -150661823 - L2 LINE L2 -729 2585 2554 2284 123 0 0 chr6 31753549 31753857 -150661385 - AluSq SINE Alu -5 308 1 1687 166 0 56 chr6 31753859 31754179 -150661063 - AluJo SINE Alu -9 303 2 1100 239 109 32 chr6 31754185 31754587 -150660655 - LTR16A1 LTR ERVL 0 457 25 200 316 19 52 chr6 31754608 31754763 -150660479 - L2 LINE L2 -954 2360 2211 1671 175 4 18 chr6 31754769 31755103 -150660139 - AluJb SINE Alu 0 336 7 961 231 154 21 chr6 31755335 31755647 -150659595 - MLT1G LTR MaLR 0 590 321 1800 149 23 46 chr6 31755647 31755949 -150659293 - AluJb SINE Alu -17 295 1 961 231 154 21 chr6 31755949 31756136 -150659106 - MLT1G LTR MaLR -269 321 1 201 272 39 0 chr6 31756374 31756445 -150658797 - MIR SINE MIR -107 155 82 391 250 47 0 chr6 31757682 31757810 -150657432 - L1ME4a LINE L1 -11 6110 5977 265 330 137 18 chr6 31757942 31758169 -150657073 + L2 LINE L2 3021 3274 -39 339 309 73 0 chr6 31758241 31758364 -150656878 - L2 LINE L2 -4 3268 3137 535 284 60 22 chr6 31758496 31758679 -150656563 - MIR3 SINE MIR -3 205 16 409 312 62 47 chr6 31758681 31759009 -150656233 + L2 LINE L2 2449 2771 -543 1396 168 49 96 chr6 31759009 31759157 -150656085 - MLT1B LTR MaLR 0 390 237 1846 106 94 4 chr6 31759157 31759461 -150655781 - AluSc SINE Alu 0 309 1 2380 99 3 13 chr6 31759463 31759775 -150655467 - AluSx SINE Alu -3 309 1 1396 168 49 96 chr6 31759775 31760029 -150655213 - MLT1B LTR MaLR -154 236 4 409 312 62 47 chr6 31760029 31760101 -150655141 + L2 LINE L2 2771 2855 -459 386 315 50 50 chr6 31760212 31760453 -150654789 + L2 LINE L2 3007 3247 -25 2449 98 0 0 chr6 31761075 31761372 -150653870 + AluSq SINE Alu 1 297 -16 310 164 79 145 chr6 31761372 31761524 -150653718 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 31761545 31761568 -150653674 + AT_rich Low_complexity Low_complexity 1 23 0 1952 170 20 0 chr6 31761576 31761882 -150653360 + AluJb SINE Alu 1 312 0 1019 216 22 86 chr6 31761913 31762274 -150652968 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 31762274 31762300 -150652942 + AT_rich Low_complexity Low_complexity 1 26 0 546 122 0 0 chr6 31763263 31763345 -150651897 + AluS SINE Alu 5 86 -226 428 138 15 0 chr6 31763346 31763411 -150651831 - AluS SINE Alu -236 66 1 229 135 0 0 chr6 31763411 31763448 -150651794 - L1ME4a LINE L1 -187 5975 5939 2422 60 0 10 chr6 31763668 31763969 -150651273 - AluY SINE Alu -13 298 1 2245 113 3 3 chr6 31763969 31764270 -150650972 - AluSx SINE Alu -11 301 1 358 359 30 0 chr6 31764302 31764433 -150650809 + MIR SINE MIR 20 154 -108 1213 227 65 36 chr6 31764541 31764849 -150650393 + MLT1I LTR MaLR 93 409 0 1863 167 3 7 chr6 31764979 31765272 -150649970 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 31765340 31765460 -150649782 + A-rich Low_complexity Low_complexity 2 119 0 2131 137 0 0 chr6 31765471 31765814 -150649428 + AluSx SINE Alu 1 343 0 336 290 136 61 chr6 31766030 31766426 -150648816 - L2 LINE L2 -20 3252 2827 518 149 6 119 chr6 31766690 31766747 -150648495 - MER83 LTR ERV1 0 448 386 2404 88 0 16 chr6 31766747 31767052 -150648190 + AluSx SINE Alu 1 300 -12 518 149 6 119 chr6 31767052 31767220 -150648022 - MER83 LTR ERV1 -62 386 114 6704 154 23 16 chr6 31767222 31768342 -150646900 - MER83-int LTR ERV1 -3741 1139 12 1466 180 73 80 chr6 31768342 31768793 -150646449 - MER83 LTR ERV1 0 448 1 335 273 55 99 chr6 31768794 31768892 -150646350 - MIR SINE MIR -19 243 142 2330 103 0 0 chr6 31768892 31769184 -150646058 - AluSc SINE Alu -17 292 1 335 273 55 99 chr6 31769184 31769338 -150645904 - MIR SINE MIR -120 142 2 183 298 153 40 chr6 31769421 31769545 -150645697 - MIR SINE MIR -56 206 69 197 234 16 47 chr6 31770471 31770535 -150644707 - MIR SINE MIR -64 198 137 1212 155 49 42 chr6 31770538 31770775 -150644467 - L1MB3 LINE L1 -7 6176 5935 1676 115 0 0 chr6 31770775 31771001 -150644241 - AluSc SINE Alu 0 309 84 1212 155 49 42 chr6 31771001 31771028 -150644214 - L1MB3 LINE L1 -248 5935 5910 1922 134 51 0 chr6 31771028 31771303 -150643939 + AluSx SINE Alu 1 289 -23 2146 98 39 0 chr6 31771311 31771596 -150643646 + AluSx SINE Alu 1 296 -16 2176 136 42 112 chr6 31771596 31771633 -150643609 - L1MB3 LINE L1 -10 6173 5276 2339 98 0 3 chr6 31771633 31771928 -150643314 - AluSp SINE Alu -16 297 4 469 243 62 82 chr6 31771933 31772048 -150643194 - L1MC4 LINE L1 -2151 5891 5775 1928 160 0 20 chr6 31772048 31772354 -150642888 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 31772354 31772481 -150642761 - L1MC4 LINE L1 -2267 5775 5654 233 146 0 0 chr6 31772452 31772500 -150642742 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 31772504 31772598 -150642644 + AluSg/x SINE Alu 210 296 -16 4148 141 70 43 chr6 31772598 31772629 -150642613 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 31772629 31772925 -150642317 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 31772925 31773598 -150641644 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 31773598 31773884 -150641358 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 31773884 31774105 -150641137 - L1MB7 LINE L1 -729 5455 5242 889 133 0 15 chr6 31774105 31774240 -150641002 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 31774240 31774515 -150640727 - L1MB7 LINE L1 -942 5242 4912 840 126 0 0 chr6 31774568 31774687 -150640555 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 31774691 31774715 -150640527 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 31774716 31774817 -150640425 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 31774816 31774902 -150640340 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 31774916 31775207 -150640035 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 31775310 31775655 -150639587 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 31776347 31776524 -150638718 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 31776663 31776866 -150638376 - MER63 DNA MER1_type 0 1061 1 2206 108 34 0 chr6 31776868 31777164 -150638078 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 31777634 31777763 -150637479 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 31777896 31778188 -150637054 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 31779152 31779283 -150635959 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 31779283 31779589 -150635653 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 31779589 31779723 -150635519 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 31779756 31779814 -150635428 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 31780035 31780121 -150635121 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 31780226 31780525 -150634717 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 31780832 31781141 -150634101 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 31781149 31781448 -150633794 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 31781948 31782244 -150632998 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 31782790 31783048 -150632194 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 31783321 31783345 -150631897 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 199 317 24 12 chr6 31783751 31783833 -150631409 + MIR SINE MIR 170 252 -10 2189 125 0 0 chr6 31784453 31784787 -150630455 - AluSx SINE Alu 0 334 1 1631 163 19 0 chr6 31785029 31785287 -150629955 - AluJo SINE Alu -49 263 1 230 121 0 0 chr6 31785333 31785366 -150629876 + Alu SINE Alu 1 33 -266 707 199 6 68 chr6 31785419 31785580 -150629662 - AluJb SINE Alu -144 168 18 935 246 17 61 chr6 31785599 31786006 -150629236 - L1MC5 LINE L1 -436 7525 7137 1270 230 74 61 chr6 31786057 31786583 -150628659 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 31786620 31786644 -150628598 + AT_rich Low_complexity Low_complexity 1 24 0 1700 196 82 54 chr6 31786852 31787281 -150627961 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 31787559 31787697 -150627545 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 31787697 31787718 -150627524 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 31787731 31787843 -150627399 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 31787844 31788167 -150627075 - L1MC5 LINE L1 -2072 5736 5403 198 0 0 0 chr6 31788168 31788190 -150627052 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 31788190 31788205 -150627037 - L1MC5 LINE L1 -983 5163 5151 1552 112 0 0 chr6 31788205 31788402 -150626840 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 31788402 31788601 -150626641 - L1MC5 LINE L1 -995 5151 4933 2226 109 13 0 chr6 31788991 31789294 -150625948 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 31789534 31789718 -150625524 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 31789861 31789979 -150625263 + L2 LINE L2 3150 3272 0 2153 114 17 3 chr6 31790167 31790466 -150624776 + AluSx SINE Alu 5 307 -5 352 322 0 0 chr6 31790473 31790563 -150624679 - L1MC4 LINE L1 -1339 6703 6614 330 344 0 0 chr6 31790491 31790581 -150624661 + L1MC4 LINE L1 6614 6703 -1339 * 2131 132 0 16 chr6 31790941 31791251 -150623991 + AluSq SINE Alu 1 305 -8 2378 97 0 6 chr6 31791251 31791561 -150623681 + AluSc SINE Alu 1 309 0 2204 108 0 11 chr6 31791578 31791891 -150623351 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 31792400 31793326 -150621916 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 31793428 31793717 -150621525 - AluSx SINE Alu -21 291 1 1567 150 72 49 chr6 31793849 31793982 -150621260 - MER39 LTR ERV1 -16 691 563 2254 131 0 6 chr6 31793982 31794296 -150620946 + AluSx SINE Alu 1 312 0 1567 150 72 49 chr6 31794296 31794508 -150620734 - MER39 LTR ERV1 -144 563 338 1382 153 5 5 chr6 31794508 31794731 -150620511 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 31794732 31794831 -150620411 - LTR30 LTR ERV1 -80 642 544 4004 158 46 49 chr6 31794832 31795796 -150619446 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 31795796 31796112 -150619130 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 31796150 31796455 -150618787 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 31796721 31797027 -150618215 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 31797038 31797080 -150618162 + Charlie8 DNA MER1_type 98 140 -2277 968 208 56 5 chr6 31797089 31797286 -150617956 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 31797746 31798044 -150617198 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 31798494 31799016 -150616226 + MER74A LTR ERVL 4 545 -13 1862 155 3 33 chr6 31799098 31799424 -150615818 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 31799438 31799715 -150615527 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 31799752 31799918 -150615324 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 31799951 31800148 -150615094 - MLT1J LTR MaLR -215 296 113 2390 78 14 0 chr6 31800305 31800599 -150614643 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 31800640 31800948 -150614294 - AluSx SINE Alu -4 308 3 227 31 31 0 chr6 31801193 31801225 -150614017 + (TG)n Simple_repeat Simple_repeat 1 33 0 1072 187 10 30 chr6 31801403 31801601 -150613641 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 31801601 31801898 -150613344 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 31802381 31802616 -150612626 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 31802634 31802937 -150612305 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 31802937 31803004 -150612238 - AluSc SINE Alu -7 292 226 7157 120 128 96 chr6 31803007 31804651 -150610591 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 31804651 31804881 -150610361 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 31805076 31805131 -150610111 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 31805399 31805644 -150609598 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 31805892 31806184 -150609058 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 31806849 31807149 -150608093 - AluSc SINE Alu -9 300 1 277 324 189 22 chr6 31807574 31808003 -150607239 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 31808003 31808427 -150606815 + LTR16A LTR ERVL 2 450 0 277 324 189 22 chr6 31808427 31808485 -150606757 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 31808493 31808575 -150606667 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 31808684 31808856 -150606386 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 31808856 31809155 -150606087 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 31809155 31809282 -150605960 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 31809283 31809481 -150605761 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 31810577 31810664 -150604578 - L2 LINE L2 0 3272 3160 2426 98 0 0 chr6 31810835 31811141 -150604101 + AluSg SINE Alu 1 306 -4 456 123 0 0 chr6 31811173 31811246 -150603996 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 31811248 31811314 -150603928 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 31811596 31811898 -150603344 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 31811971 31812019 -150603223 + MER57A LTR ERV1 292 339 -64 1337 111 0 0 chr6 31812026 31812207 -150603035 + AluSg/x SINE Alu 121 301 -11 216 245 0 75 chr6 31812390 31812443 -150602799 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 31812523 31812616 -150602626 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 31812983 31813267 -150601975 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 31813595 31813767 -150601475 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 31813842 31814159 -150601083 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 31814296 31814425 -150600817 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 31817400 31817467 -150597775 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 31817477 31817689 -150597553 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 31818838 31819003 -150596239 + FRAM SINE Alu 1 165 -1 1519 251 53 2 chr6 31819540 31819958 -150595284 + L1ME3A LINE L1 5724 6162 -8 1777 96 114 36 chr6 31819980 31820260 -150594982 + AluSx SINE Alu 1 302 -10 1380 201 138 39 chr6 31820413 31820855 -150594387 + MLT2B1 LTR ERVL 5 490 -30 201 65 22 43 chr6 31820868 31820914 -150594328 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 2172 146 0 0 chr6 31820918 31821227 -150594015 - AluJo SINE Alu -3 309 1 1035 214 124 105 chr6 31821529 31821746 -150593496 + MLT1H1 LTR MaLR 5 217 -338 2412 95 0 3 chr6 31821746 31822050 -150593192 + AluSg SINE Alu 1 303 -7 1035 214 124 105 chr6 31822050 31822062 -150593180 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 31822062 31822331 -150592911 + AluJo SINE Alu 1 279 -33 1035 214 124 105 chr6 31822331 31822641 -150592601 + MLT1H1 LTR MaLR 227 555 0 1734 169 46 54 chr6 31823302 31823610 -150591632 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 31823610 31823754 -150591488 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 31823754 31824054 -150591188 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 31824054 31824218 -150591024 + AluJb SINE Alu 128 297 -15 1734 169 46 54 chr6 31824218 31824281 -150590961 + MLT1A2 LTR MaLR 309 371 -3 1674 148 50 14 chr6 31824812 31825090 -150590152 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 31825165 31825766 -150589476 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 31826112 31826165 -150589077 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 31826372 31826679 -150588563 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 31826840 31827035 -150588207 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 31827072 31827374 -150587868 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 31827893 31827918 -150587324 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 31827918 31828040 -150587202 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 31828040 31828066 -150587176 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 31828066 31828222 -150587020 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 31828222 31828269 -150586973 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 31828272 31828368 -150586874 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 31828369 31828717 -150586525 - MER61C LTR ERV1 0 434 1 1072 165 0 0 chr6 31828754 31828924 -150586318 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 31828977 31829324 -150585918 - LTR16C LTR ERVL 0 491 105 1363 89 25 5 chr6 31829752 31829955 -150585287 + MER49 LTR ERV1 1 207 -716 2112 110 3 19 chr6 31930215 31930532 -150484710 + AluSx SINE Alu 1 312 0 949 64 24 0 chr6 31930580 31930705 -150484537 - AluSp/q SINE Alu -19 294 167 1320 146 39 39 chr6 31930705 31930959 -150484283 + AluJo SINE Alu 27 280 -32 404 159 130 0 chr6 31931312 31931381 -150483861 - AluJ/FLAM SINE Alu -233 79 2 2311 74 7 7 chr6 31931399 31931696 -150483546 - AluSp SINE Alu -16 297 1 197 0 71 0 chr6 31933650 31933678 -150481564 + (CTGGGG)n Simple_repeat Simple_repeat 1 30 0 2414 52 10 3 chr6 31934548 31934856 -150480386 - AluY SINE Alu -1 310 1 2316 78 7 0 chr6 31934856 31935162 -150480080 - AluSg SINE Alu -1 309 1 392 275 92 0 chr6 31935411 31935520 -150479722 + Charlie2 DNA MER1_type 26 144 -2718 2059 133 0 13 chr6 31935611 31935927 -150479315 - AluSx SINE Alu 0 312 1 1592 154 19 68 chr6 31935952 31936277 -150478965 - AluJb SINE Alu -3 309 1 360 183 29 203 chr6 31936354 31936515 -150478727 + Charlie2 DNA MER1_type 2578 2765 -97 1742 105 82 8 chr6 31936515 31936811 -150478431 + AluSx SINE Alu 1 316 0 360 183 29 203 chr6 31936811 31936916 -150478326 + Charlie2 DNA MER1_type 2765 2788 -74 1784 153 7 3 chr6 31936916 31937210 -150478032 + AluJb SINE Alu 1 295 -17 360 183 29 203 chr6 31937210 31937251 -150477991 + Charlie2 DNA MER1_type 2788 2834 -28 2422 60 0 10 chr6 31937427 31937741 -150477501 + AluY SINE Alu 1 311 0 2218 95 0 7 chr6 31937754 31938058 -150477184 + AluSx SINE Alu 4 305 -7 21 36 0 0 chr6 31938240 31938268 -150476974 + AT_rich Low_complexity Low_complexity 1 28 0 184 311 220 10 chr6 31938636 31938845 -150476397 + L2 LINE L2 2932 3184 -88 1845 169 3 0 chr6 31939169 31939464 -150475778 - AluJo SINE Alu -16 296 1 234 0 0 0 chr6 31939475 31939501 -150475741 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2134 108 0 3 chr6 31939504 31939792 -150475450 - AluSx SINE Alu -25 287 1 1595 144 63 0 chr6 31939794 31940064 -150475178 - AluJb SINE Alu -21 291 5 351 175 16 0 chr6 31940081 31940144 -150475098 + LTR16C LTR ERVL 426 489 -2 508 243 112 56 chr6 31940189 31940403 -150474839 - MIR SINE MIR -31 231 6 2195 99 0 19 chr6 31940409 31940721 -150474521 - AluSg SINE Alu -4 306 1 254 250 0 0 chr6 31940981 31941037 -150474205 + FAM SINE Alu 118 173 -2 815 175 7 14 chr6 31941041 31941184 -150474058 + FLAM_A SINE Alu 1 142 0 1471 158 57 57 chr6 31941185 31941333 -150473909 + AluJo SINE Alu 1 148 -164 2154 59 42 7 chr6 31941333 31941621 -150473621 + AluY SINE Alu 2 299 -12 1471 158 57 57 chr6 31941621 31941770 -150473472 + AluJo SINE Alu 147 298 -14 180 0 0 0 chr6 31941909 31941929 -150473313 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1022 142 0 12 chr6 31941929 31942091 -150473151 - AluJb SINE Alu -19 293 134 220 371 57 8 chr6 31942205 31942329 -150472913 + L2 LINE L2 3123 3252 -20 273 313 61 0 chr6 31942333 31942448 -150472794 - MIR SINE MIR -109 153 32 273 290 97 35 chr6 31943042 31943187 -150472055 - L2 LINE L2 0 3272 3119 219 291 105 12 chr6 31943553 31943639 -150471603 + MIR3 SINE MIR 3 96 -112 300 295 6 66 chr6 31944019 31944185 -150471057 - L2 LINE L2 -63 3250 3095 1648 86 0 0 chr6 31944210 31944419 -150470823 - AluSq SINE Alu -23 290 82 459 0 0 0 chr6 31944440 31944491 -150470751 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2094 110 7 0 chr6 31947074 31947366 -150467876 - AluSx SINE Alu -18 294 1 462 277 115 65 chr6 31947524 31947742 -150467500 + MIR SINE MIR 30 254 -8 267 98 27 2 chr6 31947800 31947848 -150467394 - FLAM_A SINE Alu -73 59 16 2202 88 0 7 chr6 31949264 31949559 -150465683 - AluSq SINE Alu -20 293 1 446 321 73 24 chr6 31949821 31949986 -150465256 - MIR SINE MIR -70 192 20 479 245 182 0 chr6 31950124 31950267 -150464975 - MER3 DNA MER1_type -14 195 27 356 333 111 5 chr6 31951768 31952010 -150463232 + MIR SINE MIR 1 262 0 672 261 27 69 chr6 31952052 31952127 -150463115 - MIR SINE MIR 0 262 185 1990 126 3 26 chr6 31952127 31952437 -150462805 - AluSx SINE Alu -9 303 1 672 261 27 69 chr6 31952437 31952621 -150462621 - MIR SINE MIR -77 185 14 2044 136 13 3 chr6 31952910 31953219 -150462023 + AluSq SINE Alu 1 312 -1 249 264 57 57 chr6 31953234 31953340 -150461902 - MIR SINE MIR -62 200 95 27 0 0 0 chr6 31954091 31954118 -150461124 + AT_rich Low_complexity Low_complexity 1 27 0 755 124 35 0 chr6 31954123 31954236 -150461006 - FLAM_C SINE Alu -25 118 2 210 37 0 0 chr6 31957098 31957125 -150458117 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 298 200 57 29 chr6 31958239 31958344 -150456898 - L1MC5 LINE L1 -35 7926 7819 1835 206 48 56 chr6 31958437 31958936 -150456306 + MLT1D LTR MaLR 2 496 -9 479 230 0 0 chr6 31962161 31962261 -150452981 + L2 LINE L2 3189 3288 -25 367 315 79 18 chr6 31962444 31962513 -150452729 - MIR SINE MIR -50 212 149 2008 75 44 34 chr6 31962513 31962807 -150452435 + AluSx SINE Alu 1 297 -15 367 315 79 18 chr6 31962807 31962912 -150452330 - MIR SINE MIR -113 149 30 355 330 58 12 chr6 31962946 31963119 -150452123 - MIR SINE MIR 0 262 82 845 138 7 22 chr6 31963278 31963416 -150451826 + AluJ SINE Alu 3 138 -174 1824 122 74 0 chr6 31963445 31963715 -150451527 + AluSg SINE Alu 1 290 -20 974 180 53 0 chr6 31963740 31963929 -150451313 + AluJ SINE Alu 114 312 0 2068 127 3 0 chr6 31963929 31964229 -150451013 + AluSq SINE Alu 11 311 -2 416 241 77 51 chr6 31964433 31964619 -150450623 + MIR SINE MIR 33 215 -27 819 111 8 8 chr6 31965046 31965184 -150450058 - FLAM_C SINE Alu 0 138 1 2278 81 3 3 chr6 31965337 31965646 -150449596 - AluSc SINE Alu 0 309 1 2220 64 4 4 chr6 31966136 31966468 -150448774 - AluY SINE Alu 0 332 1 2245 104 0 0 chr6 31966524 31966823 -150448419 + AluSq SINE Alu 1 299 -14 2115 106 3 0 chr6 31966883 31967176 -150448066 - AluSq SINE Alu -19 294 1 1790 183 3 0 chr6 31967187 31967498 -150447744 - AluJb SINE Alu 0 312 1 10685 193 67 50 chr6 31967499 31967944 -150447298 + L1M1 LINE L1 73 509 -7056 818 182 0 0 chr6 31967944 31968076 -150447166 + FLAM_C SINE Alu 1 132 -1 10685 193 67 50 chr6 31968076 31968867 -150446375 + L1M1 LINE L1 509 1285 -6280 2028 124 7 0 chr6 31968867 31969166 -150446076 - AluSx SINE Alu -11 301 1 10685 193 67 50 chr6 31969166 31969923 -150445319 + L1M1 LINE L1 1285 2028 -5537 2103 96 7 7 chr6 31969923 31970215 -150445027 + AluSc SINE Alu 1 292 -17 10685 193 67 50 chr6 31970215 31970386 -150444856 + L1M1 LINE L1 2028 2195 -5370 1942 151 0 19 chr6 31970386 31970704 -150444538 - AluSx SINE Alu 0 312 1 10685 193 67 50 chr6 31970704 31971492 -150443750 + L1M1 LINE L1 2195 3180 -4385 4203 81 18 20 chr6 31971492 31971906 -150443336 + L1MA2 LINE L1 5697 6111 -193 1963 143 0 0 chr6 31971906 31972206 -150443036 - AluSx SINE Alu -12 300 1 4203 81 18 20 chr6 31972206 31972400 -150442842 + L1MA2 LINE L1 6111 6304 0 2148 84 3 3 chr6 31972425 31972767 -150442475 + AluSp SINE Alu 1 342 0 3522 169 17 30 chr6 31972781 31973185 -150442057 - L1MB8 LINE L1 -68 6110 5709 219 69 0 0 chr6 31973185 31973214 -150442028 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3522 169 17 30 chr6 31973214 31973550 -150441692 - L1MB8 LINE L1 -469 5709 5370 2173 122 0 0 chr6 31973558 31973870 -150441372 + AluSx SINE Alu 1 312 0 4483 114 24 36 chr6 31974225 31974454 -150440788 - MER50 LTR ERV1 -23 711 481 2348 87 7 0 chr6 31974454 31974764 -150440478 - AluSx SINE Alu 0 312 1 4483 114 24 36 chr6 31974764 31975254 -150439988 - MER50 LTR ERV1 -253 481 1 25 0 0 0 chr6 31975376 31975401 -150439841 + AT_rich Low_complexity Low_complexity 1 25 0 225 222 0 0 chr6 31975560 31975605 -150439637 - L1MC4a LINE L1 -916 6892 6848 381 43 0 0 chr6 31975624 31975671 -150439571 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1669 168 27 3 chr6 31975683 31975981 -150439261 - AluJb SINE Alu -7 305 1 359 291 11 84 chr6 31975981 31976160 -150439082 - L1MC4 LINE L1 -1112 6930 6765 1647 151 11 25 chr6 31976212 31976521 -150438721 - AluJb SINE Alu 0 305 1 794 111 22 44 chr6 31976908 31977043 -150438199 + MLT1B LTR MaLR 16 147 -243 1999 119 0 0 chr6 31977886 31978163 -150437079 + AluSx SINE Alu 1 277 -35 288 0 0 0 chr6 31978171 31978203 -150437039 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 513 268 32 25 chr6 31978779 31978936 -150436306 + MIR SINE MIR 105 262 0 1704 119 48 24 chr6 31978952 31979109 -150436133 - AluSx SINE Alu -10 302 133 2109 111 20 0 chr6 31979109 31979407 -150435835 - AluSx SINE Alu -8 304 1 1704 119 48 24 chr6 31979407 31979544 -150435698 - AluSx SINE Alu -179 133 1 503 205 86 8 chr6 31979546 31979663 -150435579 - MIR SINE MIR -67 195 70 657 128 96 32 chr6 31980049 31980174 -150435068 - FLAM_C SINE Alu 0 133 1 1899 130 65 6 chr6 31980590 31980914 -150434328 - MER61A LTR ERV1 0 343 1 1159 154 4 53 chr6 31981125 31981372 -150433870 - AluJo SINE Alu -77 235 1 303 258 114 74 chr6 31981458 31981756 -150433486 - L1M2 LINE L1 -4797 2052 1743 2177 98 0 10 chr6 31981787 31982093 -150433149 + AluSp SINE Alu 1 303 -10 31 26 0 0 chr6 31982093 31982131 -150433111 + AT_rich Low_complexity Low_complexity 1 38 0 1829 142 3 0 chr6 31982131 31982413 -150432829 - AluJb SINE Alu -29 283 1 716 173 17 23 chr6 31982428 31982601 -150432641 + L1MB4 LINE L1 5776 5947 -233 24 0 0 0 chr6 31982623 31982647 -150432595 + AT_rich Low_complexity Low_complexity 1 24 0 374 100 17 0 chr6 31982699 31982759 -150432483 + (TG)n Simple_repeat Simple_repeat 2 62 0 1009 161 5 55 chr6 31982769 31982803 -150432439 - L1MB4 LINE L1 -14 6166 6132 270 0 0 0 chr6 31982803 31982833 -150432409 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2106 96 0 0 chr6 31982837 31983118 -150432124 - AluSx SINE Alu -31 281 1 1009 161 5 55 chr6 31983118 31983295 -150431947 - L1MB4 LINE L1 -51 6129 5961 794 140 0 70 chr6 31983303 31983446 -150431796 - FLAM_C SINE Alu 0 133 1 711 132 20 123 chr6 31983521 31983652 -150431590 - L1MB4 LINE L1 -233 5947 5839 2103 78 0 11 chr6 31983652 31983960 -150431282 + AluSx SINE Alu 2 306 0 711 132 20 123 chr6 31983960 31984029 -150431213 - L1MB4 LINE L1 -341 5839 5765 911 102 0 29 chr6 31984069 31984206 -150431036 - FLAM_C SINE Alu 0 133 1 309 226 116 110 chr6 31984530 31984676 -150430566 - L1MC5 LINE L1 -36 7925 7779 753 237 6 35 chr6 31985236 31985325 -150429917 - MER115 DNA AcHobo -81 612 529 662 226 89 96 chr6 31985325 31985561 -150429681 + LTR16A1 LTR ERVL 1 235 -222 2061 92 0 7 chr6 31985561 31985873 -150429369 - AluSq SINE Alu 0 310 1 662 226 89 96 chr6 31985873 31986095 -150429147 + LTR16A1 LTR ERVL 235 457 0 753 237 6 35 chr6 31986095 31986178 -150429064 - MER115 DNA AcHobo -164 529 445 763 332 77 16 chr6 31986248 31986558 -150428684 - MER115 DNA AcHobo -359 334 6 554 200 37 0 chr6 31987143 31987278 -150427964 + L1MD3 LINE L1 7844 7983 -12 2067 86 4 0 chr6 31987332 31987646 -150427596 + AluSq SINE Alu 5 319 0 1882 126 0 23 chr6 31988632 31988933 -150426309 - AluSq SINE Alu -17 296 3 523 62 0 0 chr6 31988951 31989015 -150426227 - U6 snRNA snRNA -6 101 38 1170 99 0 12 chr6 31989057 31989219 -150426023 - AluSq SINE Alu -153 160 1 22 56 0 0 chr6 31989271 31989307 -150425935 + AT_rich Low_complexity Low_complexity 1 36 0 260 283 67 8 chr6 31989501 31989621 -150425621 - LTR67 LTR ERVL 0 557 431 1837 141 23 13 chr6 31989850 31990154 -150425088 - AluSx SINE Alu -5 307 1 1392 230 100 84 chr6 31990194 31990489 -150424753 - HAL1 LINE L1 -689 1818 1529 1705 157 23 33 chr6 31990489 31990789 -150424453 + AluJo SINE Alu 13 309 -3 1392 230 100 84 chr6 31990789 31991127 -150424115 - HAL1 LINE L1 -978 1529 1171 1950 127 33 7 chr6 31991127 31991427 -150423815 - AluSx SINE Alu -4 308 1 1392 230 100 84 chr6 31991427 31991480 -150423762 - HAL1 LINE L1 -1336 1171 1120 409 237 50 111 chr6 31991483 31991608 -150423634 - HAL1 LINE L1 -1471 1036 926 1687 162 30 3 chr6 31991608 31991910 -150423332 - AluJb SINE Alu -2 310 1 409 237 50 111 chr6 31991910 31991982 -150423260 - HAL1 LINE L1 -1581 926 851 594 226 94 19 chr6 31991985 31992144 -150423098 + LTR41 LTR ERVL 9 179 -594 251 158 85 85 chr6 31992509 31992591 -150422651 + LTR41 LTR ERVL 651 732 -41 676 221 197 52 chr6 31992748 31992800 -150422442 - LTR50 LTR ERVL -8 787 744 2179 99 7 0 chr6 31992800 31993102 -150422140 - AluSq SINE Alu -7 306 3 676 221 197 52 chr6 31993102 31993564 -150421678 - LTR50 LTR ERVL -51 744 93 349 374 35 0 chr6 31993607 31993781 -150421461 - HAL1 LINE L1 -1787 720 541 199 131 36 36 chr6 31993790 31993874 -150421368 + T-rich Low_complexity Low_complexity 2 85 0 857 157 0 8 chr6 31993926 31994060 -150421182 - FLAM_C SINE Alu 0 133 1 550 283 113 36 chr6 31994107 31994418 -150420824 - HAL1 LINE L1 -2045 462 110 221 0 35 0 chr6 31994418 31994447 -150420795 + (TC)n Simple_repeat Simple_repeat 1 30 0 550 283 113 36 chr6 31994447 31994549 -150420693 - HAL1 LINE L1 -2397 110 17 2010 107 0 29 chr6 31994567 31994876 -150420366 + AluSp SINE Alu 1 300 -13 1790 158 0 7 chr6 31995395 31995716 -150419526 + AluJb SINE Alu 1 319 0 1768 155 10 7 chr6 31995720 31996017 -150419225 + AluJb SINE Alu 1 298 -14 366 250 20 40 chr6 31996033 31996133 -150419109 - L1ME4a LINE L1 -58 6063 5966 876 204 32 0 chr6 31996134 31996320 -150418922 - AluJo SINE Alu 0 312 121 1991 118 10 3 chr6 31996631 31996937 -150418305 + AluSx SINE Alu 1 308 -4 1253 206 0 40 chr6 31996946 31997194 -150418048 + MER8 DNA MER2_type 1 238 -1 35 24 0 0 chr6 31997800 31997842 -150417400 + AT_rich Low_complexity Low_complexity 1 42 0 1722 167 0 17 chr6 31997842 31998135 -150417107 - AluJb SINE Alu -24 288 1 1690 153 122 82 chr6 31998138 31998494 -150416748 + MLT2D LTR ERVL 7 382 -32 228 35 0 0 chr6 31998494 31998523 -150416719 + (GA)n Simple_repeat Simple_repeat 1 29 0 1690 153 122 82 chr6 31998523 31998558 -150416684 + MLT2D LTR ERVL 382 414 0 1573 109 113 4 chr6 31998708 31998985 -150416257 - AluSx SINE Alu 0 305 1 250 276 86 9 chr6 31999127 31999243 -150415999 - L1ME4a LINE L1 -381 5740 5616 1528 171 49 3 chr6 31999887 32000191 -150415051 - MER33 DNA MER1_type -6 318 1 2029 105 0 33 chr6 32000283 32000588 -150414654 - AluSq SINE Alu -18 295 1 1308 200 0 24 chr6 32001588 32001843 -150413399 + AluJb SINE Alu 7 255 -57 301 298 50 21 chr6 32001843 32001984 -150413258 + L1M4 LINE L1 3182 3326 -2820 227 264 111 14 chr6 32002126 32002198 -150413044 - MIR3 SINE MIR -125 83 5 284 322 76 17 chr6 32002267 32002385 -150412857 + L2 LINE L2 3189 3313 0 270 136 0 0 chr6 32002464 32002508 -150412734 + (TA)n Simple_repeat Simple_repeat 1 44 0 797 151 0 0 chr6 32002508 32002627 -150412615 - FLAM_C SINE Alu -20 123 5 597 251 30 12 chr6 32002659 32002826 -150412416 + MER104 DNA Tc2 4 173 -7 885 55 12 93 chr6 32003736 32003993 -150411249 + (TCTCCC)n Simple_repeat Simple_repeat 1 236 0 10425 45 8 55 chr6 32003998 32005452 -150409790 + SVA Other Other 2 1386 0 199 231 0 0 chr6 32005801 32005840 -150409402 + L2 LINE L2 3153 3191 -81 200 355 84 0 chr6 32005872 32005979 -150409263 + L3b LINE CR1 1179 1294 -289 468 284 43 81 chr6 32006020 32006231 -150409011 + MIR SINE MIR 30 232 -30 234 310 11 23 chr6 32006236 32006323 -150408919 + L2 LINE L2 3009 3094 -178 2219 105 0 0 chr6 32006482 32006777 -150408465 + AluSg SINE Alu 1 295 -15 498 274 8 0 chr6 32006871 32006995 -150408247 - MER104 DNA Tc2 -3 177 53 625 177 24 8 chr6 32007010 32007134 -150408108 - FLAM_C SINE Alu -5 128 3 2156 109 0 3 chr6 32007146 32007449 -150407793 - AluSx SINE Alu -6 306 5 342 238 90 58 chr6 32007555 32007744 -150407498 - L2 LINE L2 -89 3224 3030 1968 153 0 0 chr6 32008649 32008956 -150406286 - AluJo SINE Alu -5 307 1 1843 153 6 10 chr6 32008962 32009275 -150405967 - AluJb SINE Alu 0 312 1 450 250 73 101 chr6 32009977 32010305 -150404937 - MLT1J LTR MaLR -84 427 109 2120 91 7 0 chr6 32010907 32011192 -150404050 + AluSx SINE Alu 1 287 -25 2201 79 3 3 chr6 32011871 32012162 -150403080 + AluSq SINE Alu 1 291 -22 2066 104 7 7 chr6 32012850 32013149 -150402093 - AluSg SINE Alu -11 299 1 3253 135 18 6 chr6 32014001 32014490 -150400752 + LTR42 LTR ERVL 1 495 0 243 0 0 0 chr6 32016712 32016739 -150398503 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2126 120 0 0 chr6 32016755 32017055 -150398187 - AluSx SINE Alu -12 300 1 1527 189 0 7 chr6 32017064 32017360 -150397882 - AluJo SINE Alu -1 311 18 2137 103 59 18 chr6 32018446 32018787 -150396455 - THE1A LTR MaLR 0 355 1 1874 148 6 10 chr6 32019123 32019520 -150395722 - AluJb SINE Alu 0 397 2 287 167 17 17 chr6 32019636 32019696 -150395546 - L1ME1 LINE L1 -11 6155 6096 576 181 101 0 chr6 32019719 32019868 -150395374 - L1MD3 LINE L1 0 7995 7832 960 123 0 0 chr6 32019910 32020048 -150395194 - AluSp SINE Alu -23 290 153 1224 156 54 0 chr6 32020071 32020295 -150394947 - L1MD3 LINE L1 -871 7124 6889 829 180 48 12 chr6 32020295 32020462 -150394780 - FRAM SINE Alu -7 169 1 1646 198 0 0 chr6 32020475 32020773 -150394469 - AluJo SINE Alu -14 298 1 1868 136 7 10 chr6 32020788 32021097 -150394145 - AluSp SINE Alu -5 308 1 1200 241 33 13 chr6 32021098 32021397 -150393845 - L1MC4 LINE L1 -1114 6928 6624 1656 139 168 0 chr6 32021398 32021707 -150393535 - MER46B DNA MER2_type 0 236 1 1465 255 133 32 chr6 32021711 32021991 -150393251 - L1MD3 LINE L1 -1388 6607 6357 1585 161 50 17 chr6 32021991 32022289 -150392953 - AluJo SINE Alu -4 308 1 1465 255 133 32 chr6 32022289 32022655 -150392587 - L1MD3 LINE L1 -1638 6357 5896 1761 154 43 3 chr6 32023099 32023398 -150391844 - AluJo SINE Alu -1 311 1 322 308 204 36 chr6 32023659 32024016 -150391226 + L2 LINE L2 2856 3272 0 26 0 0 0 chr6 32024133 32024159 -150391083 + AT_rich Low_complexity Low_complexity 1 26 0 1011 182 76 57 chr6 32024197 32024257 -150390985 - L1ME2 LINE L1 -9 6155 6098 2093 163 0 0 chr6 32024257 32024563 -150390679 - AluJb SINE Alu -6 306 1 1011 182 76 57 chr6 32024563 32024766 -150390476 - L1ME2 LINE L1 -66 6098 5887 2157 134 0 10 chr6 32024796 32025102 -150390140 - AluSx SINE Alu -9 303 1 953 261 15 52 chr6 32027133 32027401 -150387841 - MIR SINE MIR 0 262 5 2093 115 7 10 chr6 32027642 32027937 -150387305 + AluSx SINE Alu 1 294 -18 351 289 248 8 chr6 32028381 32028623 -150386619 + L3 LINE CR1 1261 1560 -17 2252 133 0 0 chr6 32029229 32029537 -150385705 + AluSg SINE Alu 1 308 -2 281 104 10 0 chr6 32029725 32029777 -150385465 + Alu SINE Alu 254 296 -6 2401 50 0 4 chr6 32029779 32030105 -150385137 + AluY SINE Alu 1 325 0 225 170 21 0 chr6 32030491 32030538 -150384704 + MER63A DNA MER1_type 6 53 -157 343 231 0 13 chr6 32030638 32030716 -150384526 + LTR33A LTR ERVL 447 523 0 346 321 74 28 chr6 32031131 32031346 -150383896 + HERVL LTR ERVL 479 703 -5061 2683 174 47 16 chr6 32031440 32031735 -150383507 - MLT1D LTR MaLR 0 505 188 2207 121 0 0 chr6 32031735 32032032 -150383210 - AluSg SINE Alu -13 297 1 2683 174 47 16 chr6 32032032 32032226 -150383016 - MLT1D LTR MaLR -317 188 1 1093 234 56 0 chr6 32032277 32032563 -150382679 + MLT1E3 LTR MaLR 323 624 0 632 347 131 22 chr6 32032637 32033225 -150382017 + HERVL LTR ERVL 1186 1837 -3927 2023 139 7 23 chr6 32033419 32033728 -150381514 + AluSx SINE Alu 1 304 -8 323 320 24 8 chr6 32033831 32033956 -150381286 + HERVL LTR ERVL 3149 3275 -2379 2756 292 63 20 chr6 32034000 32035085 -150380157 + HERVL LTR ERVL 3404 4534 -1230 3082 236 49 29 chr6 32035124 32036222 -150379020 - L1ME3 LINE L1 0 6162 5054 224 207 0 134 chr6 32036222 32036241 -150379001 + MIR SINE MIR 178 198 -64 2419 77 0 7 chr6 32036241 32036539 -150378703 - AluSx SINE Alu -16 296 1 224 207 0 134 chr6 32036539 32036601 -150378641 + MIR SINE MIR 198 248 -14 459 364 62 4 chr6 32037814 32038039 -150377203 + MIR SINE MIR 8 245 -17 935 226 55 0 chr6 32038238 32038437 -150376805 + MER63A DNA MER1_type 1 210 0 730 127 18 30 chr6 32038694 32038859 -150376383 + CT-rich Low_complexity Low_complexity 1 163 0 2053 157 3 0 chr6 32038864 32039170 -150376072 - AluSx SINE Alu -5 307 1 2130 141 3 0 chr6 32040196 32040530 -150374712 + L1PB1 LINE L1 5812 6146 -5 831 248 81 14 chr6 32041044 32041254 -150373988 - MER58A DNA MER1_type 0 224 1 2536 70 0 0 chr6 32041520 32041818 -150373424 - AluY SINE Alu -13 298 1 638 301 169 41 chr6 32046646 32046906 -150368336 - L2 LINE L2 0 3313 3088 2055 96 82 0 chr6 32046906 32047187 -150368055 + AluSp SINE Alu 1 304 -9 638 301 169 41 chr6 32047187 32047345 -150367897 - L2 LINE L2 -225 3088 2841 1800 246 77 0 chr6 32047682 32048199 -150367043 - L1MC4 LINE L1 -229 7813 7257 1238 244 63 78 chr6 32048179 32048499 -150366743 - L1MCa LINE L1 -3876 2731 2408 * 1656 199 0 30 chr6 32048499 32048800 -150366442 - AluJb SINE Alu -20 292 1 1238 244 63 78 chr6 32048800 32048900 -150366342 - L1MCa LINE L1 -4199 2408 2308 2032 149 13 0 chr6 32048900 32049201 -150366041 - AluSx SINE Alu -2 310 6 1238 244 63 78 chr6 32049201 32049558 -150365684 - L1MCa LINE L1 -4299 2308 1965 1194 115 42 36 chr6 32049613 32049805 -150365437 + AluSp SINE Alu 17 209 -104 7424 130 90 96 chr6 32049808 32051514 -150363728 - pTR5 LTR ERV1 0 2438 743 720 71 0 10 chr6 32051514 32051612 -150363630 + AluSp SINE Alu 206 302 -11 531 309 75 14 chr6 32051638 32052093 -150363149 - L1MCa LINE L1 -4725 1882 1279 2137 110 0 0 chr6 32052209 32052482 -150362760 - AluSx SINE Alu -39 273 1 1394 293 150 31 chr6 32052613 32053418 -150361824 - L2 LINE L2 -592 2722 1822 356 291 70 78 chr6 32053456 32053902 -150361340 + HAL1 LINE L1 75 516 -1991 6344 126 189 73 chr6 32053915 32055435 -150359807 - pTR5 LTR ERV1 -1 2437 742 2570 241 87 36 chr6 32055442 32056517 -150358725 + HAL1 LINE L1 527 1656 -851 398 276 0 0 chr6 32056535 32056622 -150358620 + MLT1J1 LTR MaLR 36 122 -324 1271 253 44 39 chr6 32056712 32057170 -150358072 + MER74B LTR ERVL 70 529 -93 565 260 52 21 chr6 32057259 32057451 -150357791 + MLT1J1 LTR MaLR 242 439 -7 643 258 103 85 chr6 32057458 32057951 -150357291 + HAL1 LINE L1 1650 2151 -356 412 236 47 99 chr6 32057940 32058173 -150357069 + HAL1 LINE L1 2083 2303 -204 * 898 216 0 0 chr6 32058227 32058389 -150356853 + FRAM SINE Alu 1 162 -4 206 250 0 0 chr6 32058617 32058628 -150356614 + G-rich Low_complexity Low_complexity 1 11 -37 2179 117 3 3 chr6 32058628 32058928 -150356314 + AluSx SINE Alu 1 300 -12 206 250 0 0 chr6 32058928 32058964 -150356278 + G-rich Low_complexity Low_complexity 10 48 0 191 307 20 89 chr6 32059056 32059157 -150356085 + MER5A DNA MER1_type 81 174 -15 343 285 56 21 chr6 32059160 32059304 -150355938 - L2 LINE L2 -1635 1679 1531 398 253 41 89 chr6 32059424 32059570 -150355672 + L2 LINE L2 3134 3272 0 4464 113 19 6 chr6 32060172 32060855 -150354387 + L1PB1 LINE L1 5460 6151 0 704 256 20 5 chr6 32062487 32062682 -150352560 + L1ME3 LINE L1 5903 6100 -62 871 136 0 0 chr6 32062688 32062806 -150352436 + FLAM_C SINE Alu 1 118 -25 21 57 0 0 chr6 32062810 32062845 -150352397 + AT_rich Low_complexity Low_complexity 1 35 0 946 155 155 8 chr6 32062930 32063181 -150352061 + L1MA9 LINE L1 6020 6307 -5 2213 90 27 27 chr6 32063218 32063517 -150351725 + AluSg SINE Alu 11 309 -1 737 268 24 6 chr6 32063752 32063916 -150351326 - MIR SINE MIR -85 177 11 796 221 44 72 chr6 32064812 32065052 -150350190 - Charlie2 DNA MER1_type -6 2856 2628 869 141 0 30 chr6 32065052 32065187 -150350055 - FLAM_C SINE Alu -1 132 2 796 221 44 72 chr6 32065187 32065308 -150349934 - Charlie2 DNA MER1_type -234 2628 2505 649 155 19 0 chr6 32065386 32065489 -150349753 - L1MC1 LINE L1 -6 6327 6223 1191 143 43 0 chr6 32065494 32065703 -150349539 - L1MC1 LINE L1 -196 6137 5920 445 134 109 17 chr6 32065704 32065823 -150349419 - Charlie2 DNA MER1_type -356 2506 2377 1799 266 78 84 chr6 32065823 32065927 -150349315 - Charlie2b DNA MER1_type -1753 1029 926 2260 113 3 0 chr6 32065927 32066229 -150349013 - AluSx SINE Alu -9 303 1 1799 266 78 84 chr6 32066229 32066246 -150348996 - Charlie2b DNA MER1_type -1856 926 910 555 245 204 9 chr6 32066246 32066462 -150348780 - MIR SINE MIR 0 262 5 1799 266 78 84 chr6 32066462 32067374 -150347868 - Charlie2b DNA MER1_type -1872 910 1 2211 119 0 14 chr6 32067704 32067999 -150347243 - AluSx SINE Alu -21 291 1 352 115 0 213 chr6 32068041 32068107 -150347135 - L1MB8 LINE L1 -3 6175 6097 2220 124 0 13 chr6 32068107 32068421 -150346821 + AluSx SINE Alu 1 310 -2 352 115 0 213 chr6 32068421 32068442 -150346800 - L1MB8 LINE L1 -81 6097 6117 2355 87 0 32 chr6 32068442 32068753 -150346489 + AluSx SINE Alu 1 301 -11 352 115 0 213 chr6 32068753 32068786 -150346456 - L1MB8 LINE L1 -60 6118 6080 364 329 79 35 chr6 32068786 32069014 -150346228 - HAL1 LINE L1 -1156 1351 1114 599 181 54 60 chr6 32069293 32069353 -150345889 - LTR47A LTR ERVL 0 452 393 2054 128 34 90 chr6 32069353 32069499 -150345743 + LTR47B LTR ERVL 1 154 -289 1813 171 0 10 chr6 32069499 32069809 -150345433 - AluJo SINE Alu -5 307 1 2054 128 34 90 chr6 32069809 32070131 -150345111 + LTR47B LTR ERVL 154 443 0 599 181 54 60 chr6 32070131 32070236 -150345006 - LTR47A LTR ERVL -59 393 288 4203 128 128 62 chr6 32070446 32071762 -150343480 - pTR5 LTR ERV1 0 2438 741 574 182 0 58 chr6 32071813 32071934 -150343308 - MER4B-int LTR ERV1 -677 6081 5968 2012 127 0 27 chr6 32072310 32072610 -150342632 - AluSx SINE Alu 0 312 21 277 149 0 0 chr6 32072687 32072734 -150342508 - MER4B-int LTR ERV1 -790 5968 5922 308 369 0 0 chr6 32073448 32073589 -150341653 - LTR47A-int LTR ERVL -2426 3259 3119 200 315 0 0 chr6 32073667 32073721 -150341521 - L3 LINE CR1 -957 620 567 570 193 126 0 chr6 32073874 32073993 -150341249 - AluJo SINE Alu -176 136 3 2570 71 7 0 chr6 32074017 32074325 -150340917 - AluSp SINE Alu -3 310 1 610 287 26 26 chr6 32074554 32074861 -150340381 - LTR47A-int LTR ERVL -2466 3581 3275 401 333 35 28 chr6 32075297 32075579 -150339663 - LTR47A-int LTR ERVL -2699 2644 2361 2220 100 0 0 chr6 32075583 32075862 -150339380 + AluSg SINE Alu 1 317 0 263 0 53 0 chr6 32075862 32075900 -150339342 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 3482 152 2 3 chr6 32075976 32076676 -150338566 + L1PA13 LINE L1 4740 5438 -736 451 100 0 0 chr6 32076676 32076736 -150338506 + AluSp/q SINE Alu 232 291 -22 5538 77 3 15 chr6 32076736 32077006 -150338236 + L1PA13 LINE L1 5422 5694 -469 2257 101 3 3 chr6 32077006 32077304 -150337938 + AluSp SINE Alu 1 298 -15 5538 77 3 15 chr6 32077304 32077784 -150337458 + L1PA13 LINE L1 5694 6163 0 7561 52 3 30 chr6 32078060 32079526 -150335716 + SVA Other Other 154 1425 0 282 339 50 53 chr6 32079530 32079869 -150335373 - LTR47A-int LTR ERVL -4187 1860 1523 2464 84 3 0 chr6 32080301 32080600 -150334642 - AluSq SINE Alu -13 300 1 2214 116 23 0 chr6 32080601 32080903 -150334339 - AluSx SINE Alu -3 309 1 327 333 18 23 chr6 32081879 32082050 -150333192 - LTR47A-int LTR ERVL -5159 184 15 711 224 79 0 chr6 32082067 32082232 -150333010 - LTR47A LTR ERVL 0 452 275 1597 135 8 35 chr6 32082439 32082699 -150332543 + AluJo SINE Alu 1 253 -59 575 253 41 63 chr6 32085829 32085988 -150329254 - MIR SINE MIR -1 261 107 2341 62 56 0 chr6 32085988 32086276 -150328966 + AluSp SINE Alu 1 304 -9 575 253 41 63 chr6 32086276 32086337 -150328905 - MIR SINE MIR -155 107 46 341 254 82 37 chr6 32086590 32086724 -150328518 + MER5A DNA MER1_type 38 177 -12 396 0 0 0 chr6 32087012 32087056 -150328186 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 2217 123 0 0 chr6 32087058 32087360 -150327882 - AluSx SINE Alu -10 302 1 2171 132 3 0 chr6 32087360 32087664 -150327578 - AluSx SINE Alu -7 305 1 506 265 112 18 chr6 32087704 32087874 -150327368 - MIR SINE MIR -75 187 2 2149 164 40 26 chr6 32089375 32089801 -150325441 - MSTB1 LTR MaLR 0 432 1 501 308 39 0 chr6 32090442 32090598 -150324644 - MLT1J LTR MaLR -334 177 16 4277 86 19 81 chr6 32090608 32090769 -150324473 + L1MA1 LINE L1 5616 5785 -517 2389 107 0 0 chr6 32090769 32091068 -150324174 + AluSg SINE Alu 1 299 -11 2208 110 13 13 chr6 32091069 32091379 -150323863 + AluSg SINE Alu 1 310 0 4277 86 19 81 chr6 32091379 32091947 -150323295 + L1MA1 LINE L1 5784 6302 0 21 0 0 0 chr6 32091947 32091968 -150323274 + AT_rich Low_complexity Low_complexity 1 21 0 356 208 13 0 chr6 32091981 32092058 -150323184 - L1MEd LINE L1 -5284 835 758 551 176 46 28 chr6 32092163 32092271 -150322971 - FRAM SINE Alu -45 131 22 30 0 0 0 chr6 32092341 32092371 -150322871 + AT_rich Low_complexity Low_complexity 1 30 0 248 196 41 52 chr6 32092371 32092468 -150322774 - L1MA7 LINE L1 -3 6288 6193 312 248 45 98 chr6 32092550 32092683 -150322559 - L1MEd LINE L1 -5638 481 356 271 256 37 12 chr6 32092954 32093036 -150322206 + MIR SINE MIR 164 247 -15 324 300 40 20 chr6 32093237 32093337 -150321905 - L1MEd LINE L1 -5577 542 441 195 294 88 10 chr6 32093691 32093793 -150321449 + L2 LINE L2 3034 3143 -170 860 136 8 15 chr6 32094384 32094516 -150320726 + AluJb SINE Alu 3 133 -179 703 190 10 105 chr6 32094625 32094825 -150320417 + AluSg/x SINE Alu 118 298 -12 606 263 32 11 chr6 32094845 32095035 -150320207 + L1ME3 LINE L1 5961 6154 -8 2129 132 26 0 chr6 32095078 32095381 -150319861 - AluSx SINE Alu -1 311 1 3002 198 163 15 chr6 32095439 32096188 -150319054 + MER21B LTR ERV1 3 862 -1 637 136 32 0 chr6 32096205 32096330 -150318912 - L1MA7 LINE L1 -18 6273 6145 2291 101 0 3 chr6 32096416 32096712 -150318530 + AluSg SINE Alu 1 295 -15 546 344 20 25 chr6 32096717 32096961 -150318281 + MIR SINE MIR 15 257 -5 2335 92 3 0 chr6 32097748 32098048 -150317194 - AluSq SINE Alu 0 301 1 2129 202 60 84 chr6 32098164 32098846 -150316396 + LTR65 LTR ERV1 1 666 -3 481 141 0 0 chr6 32100148 32100219 -150315023 + MSTA LTR MaLR 1 71 -357 3148 56 86 0 chr6 32100219 32100628 -150314614 - MLT2A1 LTR ERVL 0 444 1 36490 67 9 4 chr6 32100628 32104242 -150311000 - HERVL-A1 LTR ERVL 0 5654 2009 2334 100 10 0 chr6 32104242 32104542 -150310700 - AluSg SINE Alu -5 305 3 36490 67 9 4 chr6 32104542 32105679 -150309563 - HERVL-A1 LTR ERVL -3645 2009 879 2503 90 3 0 chr6 32108426 32108738 -150306504 + AluSp SINE Alu 1 313 0 276 100 0 0 chr6 32109054 32109094 -150306148 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 665 161 12 12 chr6 32109113 32109274 -150305968 + CT-rich Low_complexity Low_complexity 3 163 0 315 281 137 29 chr6 32109401 32109540 -150305702 - L2 LINE L2 0 3313 3160 2064 116 39 0 chr6 32109765 32110072 -150305170 - AluSq SINE Alu 0 313 1 533 185 0 0 chr6 32110654 32110762 -150304480 + L1MB3 LINE L1 6076 6183 0 282 194 0 0 chr6 32110795 32110857 -150304385 + GA-rich Low_complexity Low_complexity 3 64 0 2418 98 0 3 chr6 32111066 32111373 -150303869 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr6 32111663 32111696 -150303546 + AT_rich Low_complexity Low_complexity 1 33 0 1521 209 34 45 chr6 32111741 32112076 -150303166 - MLT1A2 LTR MaLR 0 374 42 1735 127 57 50 chr6 32112076 32112375 -150302867 + AluJo SINE Alu 1 301 -11 1521 209 34 45 chr6 32112375 32112417 -150302825 - MLT1A2 LTR MaLR -332 42 1 518 246 24 62 chr6 32112529 32112740 -150302502 + HAL1 LINE L1 2299 2501 -6 255 158 88 18 chr6 32112899 32112956 -150302286 + MER5A DNA MER1_type 1 61 -128 737 188 0 15 chr6 32112961 32113094 -150302148 - FLAM_C SINE Alu 0 133 3 2168 132 10 0 chr6 32113106 32113410 -150301832 - AluSg SINE Alu -3 307 1 503 273 106 0 chr6 32113714 32113846 -150301396 + L2 LINE L2 3122 3267 -5 242 325 50 50 chr6 32113853 32114133 -150301109 - L2 LINE L2 -970 2344 2065 264 299 103 0 chr6 32115913 32116010 -150299232 + MIR SINE MIR 66 172 -90 317 179 62 89 chr6 32117483 32117595 -150297647 - L1ME LINE L1 -5255 815 707 201 347 0 13 chr6 32124989 32125064 -150290178 - MIR SINE MIR -56 152 79 660 259 27 23 chr6 32125068 32125288 -150289954 - MIR SINE MIR -3 259 39 298 320 31 16 chr6 32125393 32125521 -150289721 - MIR SINE MIR -50 212 83 300 361 48 7 chr6 32125631 32125783 -150289459 + MIR SINE MIR 37 195 -67 196 317 77 10 chr6 32125943 32126047 -150289195 + L2 LINE L2 3045 3155 -158 2347 109 0 0 chr6 32126077 32126380 -150288862 - AluY SINE Alu -8 303 1 184 42 0 0 chr6 32126383 32126407 -150288835 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1330 206 11 32 chr6 32126407 32126688 -150288554 - AluJb SINE Alu -1 306 9 279 0 0 0 chr6 32126689 32126720 -150288522 + (GCCTG)n Simple_repeat Simple_repeat 4 34 0 433 181 53 0 chr6 32126720 32126814 -150288428 + L2 LINE L2 3215 3313 0 1892 157 23 0 chr6 32127483 32127788 -150287454 + AluSx SINE Alu 1 312 0 372 114 63 0 chr6 32127794 32127873 -150287369 + GA-rich Low_complexity Low_complexity 5 88 0 474 279 132 20 chr6 32128016 32128083 -150287159 + L1ME4a LINE L1 5895 5953 -168 683 155 95 0 chr6 32128083 32128199 -150287043 + FLAM_C SINE Alu 5 131 -2 474 279 132 20 chr6 32128199 32128335 -150286907 + L1ME4a LINE L1 5953 6121 0 289 389 8 24 chr6 32129870 32129996 -150285246 + MIR SINE MIR 123 246 -16 303 285 131 0 chr6 32130164 32130294 -150284948 + MIR SINE MIR 50 196 -66 2211 116 0 6 chr6 32130298 32130609 -150284633 + AluSx SINE Alu 3 311 -1 532 301 82 11 chr6 32130696 32130879 -150284363 - MER91A DNA MER1_type 0 196 1 393 202 90 11 chr6 32132066 32132155 -150283087 + L2 LINE L2 3203 3298 -15 1088 189 32 23 chr6 32132628 32132845 -150282397 + MER20 DNA MER1_type 1 219 0 281 306 102 36 chr6 32133042 32133238 -150282004 - MIR SINE MIR -34 228 20 317 352 83 0 chr6 32133553 32133698 -150281544 - MIR3 SINE MIR -20 188 32 381 227 45 83 chr6 32134124 32134256 -150280986 - MIR SINE MIR 0 262 136 381 199 108 17 chr6 32134242 32134389 -150280853 + MIR SINE MIR 101 262 0 246 244 12 37 chr6 32134366 32134448 -150280794 - MIR SINE MIR -94 168 89 * 888 284 116 14 chr6 32135896 32136090 -150279152 + L1M4 LINE L1 4585 4758 -1388 2382 70 0 7 chr6 32136090 32136389 -150278853 + AluSq SINE Alu 1 297 -16 888 284 116 14 chr6 32136389 32136702 -150278540 + L1M4 LINE L1 4758 5144 -1002 305 306 95 7 chr6 32138138 32138285 -150276957 + MIR SINE MIR 66 225 -37 1691 103 157 0 chr6 32138301 32138563 -150276679 + AluSq SINE Alu 1 303 0 507 73 0 0 chr6 32138563 32138631 -150276611 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 404 206 43 0 chr6 32139018 32139110 -150276132 + MIR SINE MIR 49 144 -118 419 143 0 0 chr6 32139362 32139439 -150275803 + HY1 scRNA scRNA 36 112 0 381 260 70 50 chr6 32140996 32141139 -150274103 - MIR SINE MIR -63 145 45 346 294 0 2 chr6 32141413 32141509 -150273733 + MIR SINE MIR 69 162 -63 2511 101 11 0 chr6 32141509 32141886 -150273356 + LTR57 LTR ERVL 1 381 -30 2052 99 30 16 chr6 32142147 32142450 -150272792 + AluSx SINE Alu 1 307 -5 761 224 93 15 chr6 32143055 32143260 -150271982 + MLT1J LTR MaLR 2 222 -289 180 286 36 0 chr6 32143260 32143316 -150271926 + L2 LINE L2 2753 2810 -504 752 191 120 11 chr6 32143316 32143499 -150271743 + MER3 DNA MER1_type 1 203 -6 928 285 90 46 chr6 32143548 32144004 -150271238 + L2 LINE L2 2818 3293 -20 198 0 0 0 chr6 32144004 32144026 -150271216 + (A)n Simple_repeat Simple_repeat 1 22 0 337 246 56 16 chr6 32144062 32144188 -150271054 + MLT1J LTR MaLR 224 354 -157 204 276 0 92 chr6 32144356 32144375 -150270867 + MIR SINE MIR 126 145 -117 1779 157 0 47 chr6 32144375 32144522 -150270720 + AluJb SINE Alu 1 127 -185 2103 126 0 13 chr6 32144522 32144831 -150270411 + AluSx SINE Alu 1 305 -7 1779 157 0 47 chr6 32144831 32145002 -150270240 + AluJb SINE Alu 127 304 -8 204 276 0 92 chr6 32145002 32145069 -150270173 + MIR SINE MIR 145 204 -58 250 361 0 0 chr6 32145713 32145796 -150269446 + MIR3 SINE MIR 121 203 -5 29 28 0 0 chr6 32147073 32147109 -150268133 + AT_rich Low_complexity Low_complexity 1 36 0 324 209 351 14 chr6 32147177 32147325 -150267917 - MIR SINE MIR -64 198 1 371 236 56 84 chr6 32148013 32148191 -150267051 + MER5A DNA MER1_type 17 189 0 233 239 282 0 chr6 32151465 32151536 -150263706 - L2 LINE L2 -40 3273 3183 297 166 84 32 chr6 32152419 32152520 -150262722 - MER58 DNA MER1_type -4 2416 239 991 64 7 43 chr6 32152573 32152713 -150262529 + AluY SINE Alu 1 135 -176 1165 92 0 65 chr6 32152746 32152930 -150262312 + AluSg/x SINE Alu 120 291 -21 2224 84 3 0 chr6 32153692 32154001 -150261241 + AluSg SINE Alu 1 310 0 911 269 25 12 chr6 32154539 32154781 -150260461 - MIR SINE MIR -5 257 13 185 237 0 0 chr6 32155201 32155239 -150260003 - L2 LINE L2 -10 3262 3225 27 0 0 0 chr6 32155556 32155583 -150259659 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr6 32155583 32155603 -150259639 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr6 32157805 32157828 -150257414 + GC_rich Low_complexity Low_complexity 1 23 0 565 330 58 5 chr6 32159196 32159420 -150255822 - MIR SINE MIR -14 248 13 2167 128 0 3 chr6 32161418 32161731 -150253511 + AluSx SINE Alu 1 312 0 227 186 14 43 chr6 32163555 32163625 -150251617 + CT-rich Low_complexity Low_complexity 1 68 0 202 241 0 19 chr6 32163814 32163868 -150251374 + GA-rich Low_complexity Low_complexity 2 54 0 2303 87 6 3 chr6 32164229 32164541 -150250701 + AluSq SINE Alu 1 313 0 803 111 55 99 chr6 32164860 32164999 -150250243 + FRAM SINE Alu 1 131 -181 2191 128 0 6 chr6 32164999 32165312 -150249930 - AluSx SINE Alu -1 311 1 803 111 55 99 chr6 32165312 32165353 -150249889 + FRAM SINE Alu 131 172 -4 225 154 0 0 chr6 32165719 32165758 -150249484 + A-rich Low_complexity Low_complexity 1 39 0 1623 169 0 30 chr6 32165760 32166055 -150249187 + AluJo SINE Alu 1 286 -26 257 183 0 28 chr6 32166055 32166126 -150249116 + GA-rich Low_complexity Low_complexity 1 69 0 1123 134 43 16 chr6 32166209 32166224 -150249018 + AluJb SINE Alu 121 134 -178 2306 78 7 10 chr6 32166224 32166531 -150248711 + AluSq SINE Alu 1 306 -7 1123 134 43 16 chr6 32166531 32166702 -150248540 + AluJb SINE Alu 134 312 0 839 228 30 0 chr6 32166706 32166873 -150248369 + AluJo SINE Alu 120 291 -21 2000 102 14 14 chr6 32166879 32167199 -150248043 + AluSq SINE Alu 1 320 0 2080 128 13 0 chr6 32167200 32167505 -150247737 + AluSx SINE Alu 1 309 -3 2035 136 0 16 chr6 32167598 32167915 -150247327 + AluJb SINE Alu 1 312 0 1205 153 5 20 chr6 32167957 32168153 -150247089 - AluSg/x SINE Alu -30 280 88 297 296 125 24 chr6 32168242 32168257 -150246985 + MIR SINE MIR 16 28 -234 2291 94 0 0 chr6 32168257 32168564 -150246678 + AluSg SINE Alu 1 307 -3 297 296 125 24 chr6 32168564 32168777 -150246465 + MIR SINE MIR 28 262 0 196 240 20 0 chr6 32168776 32168826 -150246416 - L3 LINE CR1 -232 1345 1295 * 1093 326 98 27 chr6 32168898 32169673 -150245569 - L2 LINE L2 -98 3174 2346 2337 82 0 7 chr6 32169687 32169991 -150245251 + AluSg SINE Alu 1 302 -8 613 326 100 54 chr6 32170044 32170348 -150244894 - L3 LINE CR1 -396 1181 846 1543 183 37 27 chr6 32170348 32170643 -150244599 - AluJo SINE Alu -4 298 1 613 326 100 54 chr6 32170643 32170817 -150244425 - L3 LINE CR1 -731 846 681 1876 209 65 32 chr6 32170821 32171214 -150244028 + Charlie4a DNA MER1_type 1 415 -1546 2050 140 7 3 chr6 32171214 32171522 -150243720 - AluSx SINE Alu -3 309 1 1876 209 65 32 chr6 32171522 32171620 -150243622 + Charlie4a DNA MER1_type 415 508 0 272 200 15 15 chr6 32176785 32176850 -150238392 + (TGGA)n Simple_repeat Simple_repeat 3 67 0 412 160 51 29 chr6 32176866 32177041 -150238201 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 240 308 58 25 chr6 32177611 32177731 -150237511 - MIR SINE MIR -62 200 77 2288 114 10 0 chr6 32177770 32178076 -150237166 - AluSq SINE Alu -4 309 1 365 240 30 0 chr6 32178133 32178233 -150237009 + LTR33 LTR ERVL 1 103 -418 267 254 145 36 chr6 32178278 32178471 -150236771 + LTR33 LTR ERVL 174 387 -134 361 223 240 0 chr6 32180266 32180387 -150234855 + MER91B DNA MER1_type 40 189 -1 390 21 0 0 chr6 32180471 32180518 -150234724 + (CA)n Simple_repeat Simple_repeat 2 48 0 1260 264 78 26 chr6 32181591 32182311 -150232931 - L2 LINE L2 -253 3060 2308 825 107 9 0 chr6 32182322 32182434 -150232808 + FLAM_C SINE Alu 21 133 -10 455 234 0 57 chr6 32182434 32182558 -150232684 - L2 LINE L2 -994 2320 2204 548 295 12 0 chr6 32183494 32183660 -150231582 - MIR SINE MIR -11 251 84 331 330 76 28 chr6 32183726 32184148 -150231094 + L1MC4a LINE L1 5219 5111 -1035 802 118 0 37 chr6 32184148 32184284 -150230958 + FLAM_C SINE Alu 3 133 0 331 330 76 28 chr6 32184284 32184571 -150230671 + L1MC4a LINE L1 5110 5382 -764 400 232 232 0 chr6 32184954 32185096 -150230146 + MER5A DNA MER1_type 14 188 -1 229 187 0 53 chr6 32187390 32187465 -150227777 + G-rich Low_complexity Low_complexity 1 71 0 247 286 0 13 chr6 32187555 32187632 -150227610 + C-rich Low_complexity Low_complexity 3 78 0 249 206 19 62 chr6 32187720 32187880 -150227362 + (CCCG)n Simple_repeat Simple_repeat 2 154 0 213 111 0 28 chr6 32188477 32188513 -150226729 + (GGA)n Simple_repeat Simple_repeat 1 35 0 1878 133 65 0 chr6 32191635 32191913 -150223329 + AluJb SINE Alu 2 297 -15 2003 118 0 7 chr6 32192355 32192626 -150222616 + AluSx SINE Alu 37 305 -7 2086 119 0 10 chr6 32192642 32192961 -150222281 + AluSq SINE Alu 3 313 0 840 187 13 0 chr6 32193711 32193861 -150221381 + FRAM SINE Alu 21 172 -4 375 299 41 31 chr6 32194460 32194654 -150220588 - MIR SINE MIR -19 243 48 1251 203 72 28 chr6 32194654 32194800 -150220442 - AluJo SINE Alu -8 304 166 2424 92 0 0 chr6 32194800 32195103 -150220139 - AluSg SINE Alu -7 303 1 1251 203 72 28 chr6 32195103 32195247 -150219995 - AluJo SINE Alu -146 166 1 223 258 10 82 chr6 32195454 32195551 -150219691 - MIR SINE MIR -83 125 36 24 0 0 0 chr6 32196035 32196059 -150219183 + AT_rich Low_complexity Low_complexity 1 24 0 3006 136 81 29 chr6 32196234 32196816 -150218426 - LTR9 LTR ERV1 0 612 1 2327 81 0 3 chr6 32196962 32197259 -150217983 + AluY SINE Alu 1 296 -15 3708 92 8 15 chr6 32197290 32197523 -150217719 - MER41A LTR ERV1 0 554 321 2167 115 0 10 chr6 32197523 32197842 -150217400 - AluSq SINE Alu 0 316 1 3708 92 8 15 chr6 32197842 32198141 -150217101 - MER41A LTR ERV1 -233 321 25 1528 192 21 21 chr6 32198141 32198461 -150216781 + AluJb SINE Alu 9 312 0 638 246 59 27 chr6 32198511 32198698 -150216544 - LTR16C LTR ERVL 0 491 299 1698 148 42 61 chr6 32198700 32199077 -150216165 - LTR8A LTR ERV1 0 727 358 5503 197 70 40 chr6 32199109 32199474 -150215768 + L1MDa LINE L1 576 928 -5612 324 0 0 0 chr6 32199474 32199510 -150215732 + (CA)n Simple_repeat Simple_repeat 2 37 0 5503 197 70 40 chr6 32199510 32199571 -150215671 + L1MDa LINE L1 928 986 -5554 1776 185 3 10 chr6 32199571 32199863 -150215379 + AluJb SINE Alu 1 290 -22 5503 197 70 40 chr6 32199863 32200821 -150214421 + L1MDa LINE L1 986 2003 -4537 452 17 33 0 chr6 32200822 32200882 -150214360 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 189 107 0 0 chr6 32200884 32200912 -150214330 + (TG)n Simple_repeat Simple_repeat 1 28 0 705 193 0 0 chr6 32200914 32201033 -150214209 - AluJb SINE Alu -192 120 2 314 180 22 11 chr6 32201033 32201122 -150214120 + L1MDa LINE L1 1995 2084 -4456 1088 242 64 32 chr6 32201122 32201415 -150213827 + MLT1I LTR MaLR 56 338 -71 2125 145 0 0 chr6 32201415 32201712 -150213530 + AluSx SINE Alu 1 297 -15 1088 242 64 32 chr6 32201712 32201740 -150213502 + MLT1I LTR MaLR 338 364 -45 2378 97 0 3 chr6 32201740 32202039 -150213203 - AluSc SINE Alu -11 298 1 1088 242 64 32 chr6 32202039 32202059 -150213183 + MLT1I LTR MaLR 364 409 0 4066 172 56 67 chr6 32202157 32203239 -150212003 - MER11C LTR ERVK 0 1071 1 409 115 0 39 chr6 32203663 32203741 -150211501 - MLT1F LTR MaLR 0 542 468 237 108 0 0 chr6 32203752 32203789 -150211453 + (CA)n Simple_repeat Simple_repeat 2 38 0 5101 98 1 12 chr6 32203874 32204626 -150210616 + Tigger1 DNA MER2_type 846 1589 -829 1089 91 0 0 chr6 32204626 32204758 -150210484 + AluSq/x SINE Alu 1 132 -180 2416 100 0 22 chr6 32204760 32205080 -150210162 + AluSq SINE Alu 1 313 0 4938 115 48 12 chr6 32205080 32205890 -150209352 + Tigger1 DNA MER2_type 1579 2417 -1 1577 195 34 0 chr6 32206025 32206323 -150208919 - AluJo SINE Alu -4 308 1 2511 150 21 2 chr6 32206466 32206886 -150208356 + MSTA LTR MaLR 1 428 0 880 115 4 183 chr6 32207554 32207789 -150207453 - 7SK RNA RNA 0 193 1 1687 122 110 115 chr6 32208180 32208426 -150206816 - MSTA LTR MaLR 0 428 183 2341 94 13 0 chr6 32208426 32208733 -150206509 - AluSp SINE Alu -2 311 1 1687 122 110 115 chr6 32208733 32208895 -150206347 - MSTA LTR MaLR -245 183 22 2250 123 7 0 chr6 32209002 32209303 -150205939 + AluSg SINE Alu 1 303 -7 1469 193 4 23 chr6 32210140 32210404 -150204838 - AluJo SINE Alu -30 282 24 2068 133 33 41 chr6 32210407 32210774 -150204468 + THE1B LTR MaLR 1 364 0 10202 85 26 82 chr6 32210774 32211267 -150203975 + THE1B-int LTR MaLR 1 520 -1060 2297 110 3 13 chr6 32211267 32211576 -150203666 - AluSx SINE Alu -6 306 1 985 87 63 0 chr6 32211576 32211703 -150203539 - AluJb SINE Alu -177 135 1 10202 85 26 82 chr6 32211703 32212756 -150202486 + THE1B-int LTR MaLR 518 1580 0 2009 141 42 33 chr6 32212756 32213117 -150202125 + THE1B LTR MaLR 1 364 0 2211 133 0 0 chr6 32213133 32213435 -150201807 - AluSx SINE Alu -10 302 1 755 246 77 0 chr6 32213470 32213677 -150201565 - MLT1J LTR MaLR -288 223 1 1993 161 7 0 chr6 32213776 32214086 -150201156 - AluJb SINE Alu 0 312 1 258 306 126 9 chr6 32214472 32214583 -150200659 + L2 LINE L2 3149 3272 0 1189 278 80 17 chr6 32216218 32216693 -150198549 - MLT1J LTR MaLR -6 505 1 3760 139 19 17 chr6 32217111 32217553 -150197689 + MER41B LTR ERV1 1 446 -189 2072 118 51 0 chr6 32217553 32217849 -150197393 + AluSx SINE Alu 1 311 -1 3760 139 19 17 chr6 32217849 32218038 -150197204 + MER41B LTR ERV1 446 633 -2 2595 64 0 3 chr6 32218200 32218511 -150196731 - AluY SINE Alu -1 310 1 322 261 35 17 chr6 32218534 32218547 -150196695 - L1MA9 LINE L1 -21 6291 6279 832 241 7 55 chr6 32218547 32218821 -150196421 - L1ME1 LINE L1 -34 6132 5872 384 138 0 0 chr6 32218846 32218904 -150196338 - THE1B LTR MaLR 0 428 371 2290 109 23 0 chr6 32218909 32219213 -150196029 + AluSx SINE Alu 1 311 -1 620 150 9 0 chr6 32219213 32219326 -150195916 + GA-rich Low_complexity Low_complexity 3 116 0 2079 114 7 7 chr6 32219327 32219633 -150195609 - THE1B LTR MaLR -58 306 1 9537 101 43 43 chr6 32219633 32221212 -150194030 - THE1B-int LTR MaLR 0 1580 2 2015 140 6 32 chr6 32221225 32221539 -150193703 - AluSx SINE Alu -6 306 1 2269 108 19 17 chr6 32221539 32221901 -150193341 - THE1B LTR MaLR -1 363 1 272 305 45 23 chr6 32222373 32222550 -150192692 + L1MC5 LINE L1 7729 7909 -52 29 94 0 0 chr6 32223037 32223122 -150192120 + AT_rich Low_complexity Low_complexity 1 85 0 1492 247 82 69 chr6 32223696 32224332 -150190910 + MER21B LTR ERV1 28 671 -192 1437 144 31 126 chr6 32224493 32224819 -150190423 - AluJo SINE Alu -17 295 1 800 96 0 0 chr6 32225092 32225196 -150190046 - AluSg/x SINE Alu -10 302 199 2366 106 0 3 chr6 32225271 32225583 -150189659 - AluSx SINE Alu -1 311 1 21 0 0 0 chr6 32225583 32225604 -150189638 + AT_rich Low_complexity Low_complexity 1 21 0 2419 99 0 3 chr6 32225630 32225942 -150189300 + AluSq SINE Alu 3 313 0 628 205 0 0 chr6 32225946 32226063 -150189179 - FLAM_C SINE Alu -26 117 1 1735 143 8 11 chr6 32226212 32226478 -150188764 + AluSq SINE Alu 1 265 -48 3920 124 44 2 chr6 32226483 32227097 -150188145 + LTR9B LTR ERV1 5 644 0 180 0 0 0 chr6 32227115 32227135 -150188107 + (A)n Simple_repeat Simple_repeat 1 20 0 205 222 10 61 chr6 32228116 32228215 -150187027 + CT-rich Low_complexity Low_complexity 2 95 0 1519 131 20 31 chr6 32228449 32228791 -150186451 - MER61C LTR ERV1 0 434 3 1380 159 0 14 chr6 32228791 32229011 -150186231 + AluJb SINE Alu 95 311 -1 2966 176 73 30 chr6 32229011 32229279 -150185963 - MER49 LTR ERV1 -59 864 609 2423 76 6 19 chr6 32229279 32229593 -150185649 + AluY SINE Alu 1 310 -1 2966 176 73 30 chr6 32229593 32229954 -150185288 - MER49 LTR ERV1 -314 609 208 349 308 62 7 chr6 32329954 32330100 -150085142 - L2 LINE L2 -836 2478 2325 692 316 117 7 chr6 32331351 32331788 -150083454 - L2 LINE L2 -1009 2305 1821 231 36 0 0 chr6 32331927 32331955 -150083287 + (TA)n Simple_repeat Simple_repeat 2 29 0 27 73 0 0 chr6 32332052 32332107 -150083135 + AT_rich Low_complexity Low_complexity 1 55 0 390 264 64 123 chr6 32332114 32332584 -150082658 + HAL1 LINE L1 1104 1545 -962 3102 117 29 22 chr6 32332595 32333084 -150082158 + L1MA3 LINE L1 5814 6305 0 266 279 27 18 chr6 32333100 32333211 -150082031 + HAL1 LINE L1 1529 1640 -867 329 185 0 12 chr6 32333397 32333438 -150081804 + GA-rich Low_complexity Low_complexity 5 46 -38 1259 198 23 43 chr6 32333438 32333741 -150081501 + AluJb SINE Alu 1 297 -5 329 185 0 12 chr6 32333741 32333780 -150081462 + GA-rich Low_complexity Low_complexity 46 84 0 206 315 0 0 chr6 32333999 32334081 -150081161 + A-rich Low_complexity Low_complexity 1 85 -7 2698 0 0 0 chr6 32334081 32334364 -150080878 - AluYa5 SINE Alu -12 299 17 26 82 0 0 chr6 32334475 32334536 -150080706 + AT_rich Low_complexity Low_complexity 1 61 0 2152 132 3 0 chr6 32334622 32334917 -150080325 + AluSq SINE Alu 1 296 -17 309 273 99 55 chr6 32335227 32335733 -150079509 + L1M4 LINE L1 2739 3266 -2880 213 121 0 0 chr6 32335940 32335973 -150079269 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 1009 219 46 63 chr6 32336130 32336481 -150078761 - MER87 LTR ERV1 -1 540 196 1601 96 0 0 chr6 32336900 32337098 -150078144 + AluSx SINE Alu 1 198 -114 4541 72 49 8 chr6 32337098 32337708 -150077534 - PABL_A LTR ERV1 -25 635 1 325 133 27 0 chr6 32338483 32338558 -150076684 + CT-rich Low_complexity Low_complexity 2 78 0 1144 207 53 53 chr6 32339046 32339476 -150075766 + L1M4 LINE L1 2162 2591 -3555 916 289 72 38 chr6 32339476 32339852 -150075390 - L2 LINE L2 -303 3010 2623 1979 155 3 7 chr6 32340217 32340521 -150074721 - AluJo SINE Alu -9 303 1 1154 192 104 0 chr6 32340521 32340696 -150074546 - MER58B DNA MER1_type -2118 302 92 279 0 0 0 chr6 32340696 32340727 -150074515 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1154 192 104 0 chr6 32340727 32340794 -150074448 - MER58B DNA MER1_type -2328 92 33 1669 149 35 24 chr6 32340961 32341249 -150073993 - AluJo SINE Alu -16 296 6 1890 133 17 23 chr6 32341356 32341656 -150073586 + AluJb SINE Alu 1 298 -14 938 135 0 0 chr6 32342922 32343048 -150072194 - FLAM_C SINE Alu -7 126 1 636 283 74 13 chr6 32343358 32343588 -150071654 - MIR SINE MIR -16 246 3 2290 94 0 13 chr6 32344089 32344388 -150070854 - AluSq SINE Alu -18 295 1 180 0 0 0 chr6 32344825 32344845 -150070397 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 32345608 32345639 -150069603 + AT_rich Low_complexity Low_complexity 1 31 0 949 101 7 50 chr6 32346022 32346161 -150069081 + AluJ SINE Alu 1 133 -169 2248 112 0 0 chr6 32346637 32346940 -150068302 + AluSx SINE Alu 1 303 -9 789 215 57 0 chr6 32346941 32347099 -150068143 + AluJ SINE Alu 134 300 -12 439 139 38 13 chr6 32347099 32347178 -150068064 + MER5B DNA MER1_type 96 176 -2 2209 82 0 7 chr6 32347591 32347905 -150067337 + AluSg SINE Alu 1 312 0 2033 97 3 7 chr6 32350282 32350571 -150064671 + AluSx SINE Alu 1 288 -24 2299 99 3 0 chr6 32350607 32350909 -150064333 + AluY SINE Alu 1 303 -8 817 150 17 0 chr6 32351044 32351164 -150064078 + AluJb SINE Alu 176 297 -15 440 241 247 0 chr6 32351347 32351509 -150063733 + MIR SINE MIR 61 262 0 2206 140 33 9 chr6 32351683 32352012 -150063230 - MER1B DNA MER1_type 0 337 1 373 130 19 0 chr6 32352385 32352439 -150062803 + L2 LINE L2 3246 3300 -13 2089 144 0 0 chr6 32353145 32353457 -150061785 + AluSx SINE Alu 1 312 0 294 273 39 0 chr6 32353569 32353646 -150061596 + L1MC4 LINE L1 7403 7482 -560 1044 68 0 8 chr6 32353647 32353780 -150061462 + AluSq/x SINE Alu 1 132 -180 1988 92 21 4 chr6 32353782 32354063 -150061179 + AluSq SINE Alu 1 286 -27 362 221 142 0 chr6 32354074 32354187 -150061055 + L1MC4 LINE L1 7610 7738 -304 496 218 6 51 chr6 32354248 32354364 -150060878 + L1MC4 LINE L1 7894 8003 -39 1776 125 40 15 chr6 32354364 32354636 -150060606 - AluJb SINE Alu -14 298 20 496 218 6 51 chr6 32354636 32354675 -150060567 + L1MC4 LINE L1 8003 8042 0 2217 111 7 0 chr6 32354688 32354986 -150060256 - AluSx SINE Alu -12 300 1 947 121 29 40 chr6 32354986 32355160 -150060082 + L1MB3 LINE L1 6011 6182 -1 965 251 183 16 chr6 32355167 32355629 -150059613 + L2 LINE L2 2771 3303 -10 654 191 72 7 chr6 32355827 32355979 -150059263 + L1MD3 LINE L1 7832 7993 -2 220 250 29 0 chr6 32356599 32356627 -150058615 + (TAA)n Simple_repeat Simple_repeat 3 29 -43 1969 123 32 0 chr6 32356627 32356904 -150058338 + AluSx SINE Alu 1 286 -26 220 250 29 0 chr6 32356904 32356943 -150058299 + (TAA)n Simple_repeat Simple_repeat 29 72 0 1878 137 14 17 chr6 32356947 32357240 -150058002 - AluSx SINE Alu -19 293 2 803 252 86 14 chr6 32357250 32357460 -150057782 - MIR SINE MIR -11 251 27 1293 203 18 0 chr6 32357464 32357681 -150057561 + MER58A DNA MER1_type 2 222 -2 2294 95 3 0 chr6 32357734 32358029 -150057213 + AluSx SINE Alu 1 296 -16 432 51 0 0 chr6 32358523 32358582 -150056660 + (CA)n Simple_repeat Simple_repeat 1 59 0 240 295 16 49 chr6 32358582 32358696 -150056546 - MIR SINE MIR -67 141 30 622 106 0 0 chr6 32360349 32360434 -150054808 - AluS SINE Alu -227 86 2 1786 60 0 38 chr6 32360939 32361174 -150054068 - AluY SINE Alu -6 305 80 517 151 0 0 chr6 32361469 32361542 -150053700 - tRNA-Ala-GCG tRNA tRNA -2 73 1 216 0 0 0 chr6 32361873 32361897 -150053345 + (CA)n Simple_repeat Simple_repeat 2 25 0 5720 170 13 31 chr6 32361990 32362312 -150052930 + L1MA10 LINE L1 4974 5300 -1034 243 0 0 0 chr6 32362312 32362339 -150052903 + (CA)n Simple_repeat Simple_repeat 1 27 0 5720 170 13 31 chr6 32362339 32363191 -150052051 + L1MA10 LINE L1 5300 6130 -204 2509 46 3 10 chr6 32363191 32363497 -150051745 + AluY SINE Alu 1 304 -7 5720 170 13 31 chr6 32363497 32363691 -150051551 + L1MA10 LINE L1 6130 6326 -8 663 146 0 146 chr6 32363852 32364016 -150051226 - FLAM_C SINE Alu -3 140 1 41 0 0 19 chr6 32365400 32365424 -150049818 + AT_rich Low_complexity Low_complexity 1 24 -27 2269 84 0 0 chr6 32365424 32365720 -150049522 - AluSx SINE Alu -16 296 1 41 0 0 19 chr6 32365720 32365747 -150049495 + AT_rich Low_complexity Low_complexity 24 51 0 1734 177 0 13 chr6 32365747 32366052 -150049190 + AluJo SINE Alu 1 301 -11 418 182 61 0 chr6 32366088 32366154 -150049088 + AluJ/FLAM SINE Alu 12 81 -231 2087 132 3 3 chr6 32366301 32366611 -150048631 - AluSx SINE Alu 0 312 3 2168 69 14 28 chr6 32366678 32366996 -150048246 + AluY SINE Alu 1 314 0 261 221 0 0 chr6 32367600 32367668 -150047574 + CT-rich Low_complexity Low_complexity 3 70 0 470 162 60 62 chr6 32367908 32368060 -150047182 - L1MC3 LINE L1 -1 7765 6193 2093 102 0 0 chr6 32368062 32368337 -150046905 + AluSx SINE Alu 2 276 -36 207 0 0 0 chr6 32368339 32368362 -150046880 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2585 58 0 6 chr6 32368364 32368677 -150046565 + AluSx SINE Alu 2 312 0 571 56 0 0 chr6 32368994 32369065 -150046177 - tRNA-Arg-CGA tRNA tRNA -5 71 1 1154 163 5 10 chr6 32369507 32369709 -150045533 + L1PA16 LINE L1 5966 6166 0 267 93 0 0 chr6 32370649 32370692 -150044550 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 301 200 0 0 chr6 32370693 32370743 -150044499 - MER66B LTR ERV1 -142 344 295 555 16 0 0 chr6 32371384 32371448 -150043794 + (TG)n Simple_repeat Simple_repeat 2 65 0 5504 124 52 19 chr6 32371546 32372033 -150043209 + L1MA3 LINE L1 5346 5816 -489 3730 65 135 68 chr6 32372033 32372605 -150042637 - LTR66 LTR ERVL 0 610 1 5504 124 52 19 chr6 32372605 32373047 -150042195 + L1MA3 LINE L1 5816 6305 0 607 82 0 0 chr6 32373792 32373865 -150041377 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2780 160 6 23 chr6 32373920 32374396 -150040846 + MER1A DNA MER1_type 62 529 0 3440 237 63 54 chr6 32374667 32375124 -150040118 + L1MDa LINE L1 1696 2147 -4393 2081 136 0 3 chr6 32375124 32375434 -150039808 + AluSg SINE Alu 1 309 -1 3440 237 63 54 chr6 32375434 32375668 -150039574 + L1MDa LINE L1 2147 2377 -4163 1501 84 21 0 chr6 32375668 32375859 -150039383 + AluSx SINE Alu 1 195 -117 3440 237 63 54 chr6 32375859 32376273 -150038969 + L1MDa LINE L1 2377 2786 -3754 2152 140 0 0 chr6 32376273 32376580 -150038662 - AluSq SINE Alu -6 307 1 3440 237 63 54 chr6 32376580 32377485 -150037757 + L1MDa LINE L1 2786 3733 -2807 1036 104 15 4 chr6 32377505 32377711 -150037531 + AluSq SINE Alu 2 284 -29 332 203 28 40 chr6 32378098 32378275 -150036967 + (TATAA)n Simple_repeat Simple_repeat 4 178 0 1556 247 57 52 chr6 32378311 32378343 -150036899 + L1MDa LINE L1 3722 3752 -2788 2877 83 193 43 chr6 32378343 32378450 -150036792 - LTR61 LTR ERV1 0 595 505 2232 106 10 0 chr6 32378450 32378753 -150036489 + AluSx SINE Alu 1 306 -6 2877 83 193 43 chr6 32378753 32379162 -150036080 - LTR61 LTR ERV1 -90 505 1 1556 247 57 52 chr6 32379162 32379331 -150035911 + L1MDa LINE L1 3752 3919 -2621 2304 99 0 0 chr6 32379331 32379625 -150035617 + AluSq SINE Alu 1 294 -19 1556 247 57 52 chr6 32379625 32379683 -150035559 + L1MDa LINE L1 3919 3975 -2565 1989 60 108 4 chr6 32379683 32379951 -150035291 + AluY SINE Alu 1 296 -15 1556 247 57 52 chr6 32379951 32380344 -150034898 + L1MDa LINE L1 3975 4379 -2161 1708 127 48 65 chr6 32380375 32380427 -150034815 - THE1C LTR MaLR 0 375 324 2155 113 0 0 chr6 32380427 32380720 -150034522 - AluSg SINE Alu -15 295 3 1708 127 48 65 chr6 32380720 32381021 -150034221 - THE1C LTR MaLR -51 324 19 559 237 290 15 chr6 32381087 32381349 -150033893 + L1M4 LINE L1 4751 5084 -1062 2033 117 29 0 chr6 32381551 32381995 -150033247 + AluSx SINE Alu 1 452 0 533 177 14 99 chr6 32382313 32382340 -150032902 - MER5A DNA MER1_type 0 189 161 2274 92 3 0 chr6 32382340 32382635 -150032607 + AluSg SINE Alu 1 296 -14 533 177 14 99 chr6 32382635 32382748 -150032494 - MER5A DNA MER1_type -28 161 61 2303 88 3 0 chr6 32383441 32383735 -150031507 - AluSp SINE Alu -16 297 3 21 0 0 0 chr6 32384066 32384087 -150031155 + GC_rich Low_complexity Low_complexity 1 21 0 561 69 0 0 chr6 32384421 32384493 -150030749 - tRNA-Ala-GCG tRNA tRNA -3 72 1 989 183 6 0 chr6 32384983 32385158 -150030084 + FRAM SINE Alu 1 173 -3 2207 101 3 14 chr6 32385588 32385906 -150029336 + AluSq SINE Alu 1 313 0 736 209 32 102 chr6 32386676 32386790 -150028452 + MER33 DNA MER1_type 1 111 -2474 2315 106 0 0 chr6 32386790 32387092 -150028150 + AluSg SINE Alu 1 302 -8 204 97 0 0 chr6 32387092 32387123 -150028119 + (TA)n Simple_repeat Simple_repeat 1 31 0 736 209 32 102 chr6 32387123 32387254 -150027988 + MER33 DNA MER1_type 110 208 -2377 1163 133 9 64 chr6 32387254 32387472 -150027770 + L1PA16 LINE L1 5952 6157 -9 736 209 32 102 chr6 32387472 32387577 -150027665 + MER33 DNA MER1_type 208 319 -5 1359 166 7 83 chr6 32388448 32388749 -150026493 + AluJb SINE Alu 1 278 -34 807 42 42 0 chr6 32388753 32388871 -150026371 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 2096 108 3 3 chr6 32389165 32389452 -150025790 + AluSx SINE Alu 1 287 -25 548 82 0 14 chr6 32389650 32389723 -150025519 - tRNA-Phe-TTC tRNA tRNA -4 72 1 1267 93 11 11 chr6 32389823 32390005 -150025237 + AluSg/x SINE Alu 122 303 -7 669 138 0 204 chr6 32390113 32390338 -150024904 - AluSg/x SINE Alu -10 300 122 607 29 0 0 chr6 32390439 32390508 -150024734 + tRNA-Phe-TTC tRNA tRNA 1 69 -7 2302 106 0 0 chr6 32391174 32391486 -150023756 + AluSx SINE Alu 1 312 0 3660 126 30 4 chr6 32392231 32392773 -150022469 - LTR6A LTR ERV1 0 564 9 60739 135 10 10 chr6 32392783 32400002 -150015240 - HERVS71 LTR ERV1 -41 8937 1719 2467 58 10 0 chr6 32400002 32400294 -150014948 + AluY SINE Alu 1 295 -16 60739 135 10 10 chr6 32400294 32402010 -150013232 - HERVS71 LTR ERV1 -7259 1719 4 3671 122 28 4 chr6 32402012 32402555 -150012687 - LTR6A LTR ERV1 0 564 9 24 0 0 0 chr6 32403749 32403773 -150011469 + AT_rich Low_complexity Low_complexity 1 24 0 2394 106 0 0 chr6 32403800 32404160 -150011082 + AluY SINE Alu 1 360 0 326 288 0 0 chr6 32404824 32404897 -150010345 - tRNA-Ala-GCG tRNA tRNA -2 73 1 531 0 0 0 chr6 32405024 32405083 -150010159 + (TC)n Simple_repeat Simple_repeat 1 59 0 3233 238 101 40 chr6 32405272 32406139 -150009103 + L1MC4 LINE L1 6098 7031 -777 2479 66 0 0 chr6 32406139 32406442 -150008800 + AluY SINE Alu 2 304 -7 3233 238 101 40 chr6 32406442 32407158 -150008084 + L1MC4 LINE L1 7031 7702 -106 253 291 12 12 chr6 32407510 32407596 -150007646 + GA-rich Low_complexity Low_complexity 4 89 0 2505 55 3 3 chr6 32407734 32408043 -150007199 + AluY SINE Alu 1 309 -2 754 219 0 64 chr6 32408314 32408591 -150006651 + FAM SINE Alu 1 129 0 502 259 199 19 chr6 32408602 32408870 -150006372 + L1M4 LINE L1 2183 2401 -3745 1984 97 3 45 chr6 32408870 32409182 -150006060 + AluSc SINE Alu 1 300 0 2108 91 3 47 chr6 32409190 32409475 -150005767 + AluSx SINE Alu 5 276 -36 257 50 0 25 chr6 32409475 32409515 -150005727 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2108 91 3 47 chr6 32409515 32409548 -150005694 + AluSx SINE Alu 276 309 -3 502 259 199 19 chr6 32409548 32409590 -150005652 + L1M4 LINE L1 2406 2561 -3585 2154 64 4 0 chr6 32410065 32410330 -150004912 - AluY SINE Alu -42 269 4 1047 245 62 28 chr6 32410338 32410807 -150004435 + L1M4 LINE L1 2557 3041 -3105 675 84 11 0 chr6 32410810 32410905 -150004337 + AluSg1 SINE Alu 2 97 -212 315 0 0 0 chr6 32410905 32410940 -150004302 + (A)n Simple_repeat Simple_repeat 1 35 0 1000 264 68 32 chr6 32410941 32411437 -150003805 + L1M4 LINE L1 3028 3541 -2605 2160 99 0 0 chr6 32411473 32411746 -150003496 - AluSx SINE Alu -31 281 9 1529 105 37 131 chr6 32413162 32413513 -150001729 - AluYb8 SINE Alu 0 318 1 534 180 57 8 chr6 32413994 32414116 -150001126 - MER5A DNA MER1_type 0 189 62 211 216 0 0 chr6 32415108 32415159 -150000083 + A-rich Low_complexity Low_complexity 1 51 0 2175 106 30 0 chr6 32415163 32415464 -149999778 + AluSx SINE Alu 2 311 -1 582 56 0 0 chr6 32415829 32415901 -149999341 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1084 74 14 0 chr6 32416049 32416197 -149999045 + AluSq SINE Alu 148 297 -16 276 30 0 0 chr6 32416305 32416338 -149998904 + (TG)n Simple_repeat Simple_repeat 2 34 0 2440 60 13 0 chr6 32416428 32416730 -149998512 + AluSp SINE Alu 1 306 -7 679 0 0 0 chr6 32416781 32416854 -149998388 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1377 268 99 41 chr6 32417908 32418142 -149997100 + L1ME3 LINE L1 5186 5405 -757 1740 158 24 3 chr6 32418142 32418433 -149996809 + AluSx SINE Alu 2 298 -14 1377 268 99 41 chr6 32418433 32418585 -149996657 + L1ME3 LINE L1 5405 5547 -615 396 0 0 0 chr6 32418585 32418629 -149996613 + (TA)n Simple_repeat Simple_repeat 2 45 0 1377 268 99 41 chr6 32418629 32418876 -149996366 + L1ME3 LINE L1 5547 5778 -384 2431 93 0 0 chr6 32418876 32419186 -149996056 + AluY SINE Alu 1 310 -1 1377 268 99 41 chr6 32419186 32419252 -149995990 + L1ME3 LINE L1 5778 5839 -323 817 179 153 85 chr6 32419252 32419528 -149995714 + MLT1A1 LTR MaLR 1 257 -108 2058 120 0 7 chr6 32419528 32419811 -149995431 + AluSq SINE Alu 1 281 -32 300 27 0 0 chr6 32419812 32419849 -149995393 + (GGGAA)n Simple_repeat Simple_repeat 2 38 0 817 179 153 85 chr6 32419849 32419910 -149995332 + MLT1A1 LTR MaLR 256 363 -2 1377 268 99 41 chr6 32419910 32420061 -149995181 + L1ME3 LINE L1 5839 6075 -87 180 0 0 0 chr6 32420195 32420215 -149995027 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 471 153 0 0 chr6 32422019 32422091 -149993151 - tRNA-Ala-GCG tRNA tRNA -3 72 1 2287 88 24 0 chr6 32422250 32422627 -149992615 + AluSg1 SINE Alu 1 384 0 823 237 122 101 chr6 32422785 32422929 -149992313 + L1MC4a LINE L1 6098 6238 -1570 326 0 0 0 chr6 32422929 32422964 -149992278 + U2 snRNA snRNA 1 35 -153 823 237 122 101 chr6 32422964 32423293 -149991949 + L1MC4a LINE L1 6238 6623 -1185 2114 127 13 3 chr6 32423293 32423592 -149991650 + AluSx SINE Alu 1 302 -10 823 237 122 101 chr6 32423592 32423725 -149991517 + L1MC4a LINE L1 6623 6752 -1056 406 129 0 0 chr6 32423754 32423816 -149991426 + Alu SINE Alu 236 297 -15 2302 232 66 34 chr6 32423816 32424604 -149990638 + L1MC4 LINE L1 7089 7901 -141 281 67 0 22 chr6 32424634 32424679 -149990563 + (TA)n Simple_repeat Simple_repeat 2 45 0 305 228 11 33 chr6 32424686 32424778 -149990464 + L1MC4 LINE L1 6614 6703 -1339 307 215 21 43 chr6 32424780 32424873 -149990369 + L1MC4 LINE L1 6613 6703 -1339 440 93 0 41 chr6 32424879 32424976 -149990266 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 244 51 32 chr6 32425334 32425517 -149989725 + L1M4 LINE L1 2429 2607 -3539 2501 51 0 7 chr6 32425517 32425812 -149989430 + AluY SINE Alu 1 293 -18 2151 244 51 32 chr6 32425812 32426364 -149988878 + L1M4 LINE L1 2607 3186 -2960 186 43 0 0 chr6 32426364 32426387 -149988855 + (CA)n Simple_repeat Simple_repeat 2 24 0 2151 244 51 32 chr6 32426387 32426545 -149988697 + L1M4 LINE L1 3186 3340 -2806 2136 117 3 0 chr6 32426549 32426867 -149988375 + AluSx SINE Alu 1 319 0 546 198 50 8 chr6 32427034 32427155 -149988087 - MER5A DNA MER1_type 0 189 64 2270 67 7 7 chr6 32428243 32428571 -149986671 + AluSq SINE Alu 1 328 0 539 70 14 0 chr6 32428849 32428920 -149986322 - tRNA-Ala-GCG tRNA tRNA -3 72 1 591 235 29 0 chr6 32429401 32429537 -149985705 + FRAM SINE Alu 1 137 -39 207 0 0 0 chr6 32429538 32429561 -149985681 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 458 174 20 0 chr6 32429574 32429672 -149985570 + GA-rich Low_complexity Low_complexity 2 101 0 225 254 0 0 chr6 32430454 32430509 -149984733 + (TG)n Simple_repeat Simple_repeat 2 56 0 847 167 72 85 chr6 32430893 32431115 -149984127 + MER33 DNA MER1_type 1 214 -2371 1160 144 25 5 chr6 32431115 32431317 -149983925 + L1PA16 LINE L1 5952 6157 -9 847 167 72 85 chr6 32431317 32431338 -149983904 + MER33 DNA MER1_type 214 234 -2351 2502 53 3 25 chr6 32431338 32431474 -149983768 + AluSp SINE Alu 1 138 -175 2274 55 31 3 chr6 32431474 32431763 -149983479 + AluY SINE Alu 1 297 -14 2502 53 3 25 chr6 32431763 32431944 -149983298 + AluSp SINE Alu 138 311 -2 847 167 72 85 chr6 32431944 32432019 -149983223 + MER33 DNA MER1_type 234 302 -22 1312 151 43 108 chr6 32432962 32433287 -149981955 + AluJb SINE Alu 1 304 -8 216 163 0 0 chr6 32433640 32433683 -149981559 + (TA)n Simple_repeat Simple_repeat 1 43 0 315 0 0 0 chr6 32433685 32433720 -149981522 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 118 0 0 chr6 32433755 32433789 -149981453 + (A)n Simple_repeat Simple_repeat 1 34 0 647 27 0 0 chr6 32433882 32433955 -149981287 - tRNA-Phe-TTC tRNA tRNA -3 73 1 1679 112 97 12 chr6 32434497 32434789 -149980453 - AluSg SINE Alu 0 314 1 1986 94 63 18 chr6 32434854 32435140 -149980102 + AluSx SINE Alu 1 299 -13 468 195 71 0 chr6 32435178 32435291 -149979951 - AluSc SINE Alu -12 297 177 2310 81 0 0 chr6 32435561 32435844 -149979398 + AluSq SINE Alu 1 283 -30 33 0 0 0 chr6 32435883 32435916 -149979326 + AT_rich Low_complexity Low_complexity 1 33 0 432 194 0 0 chr6 32438121 32438193 -149977049 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1278 244 144 59 chr6 32438501 32438956 -149976286 + L1MC4a LINE L1 6098 6636 -1172 1950 128 21 0 chr6 32438956 32439244 -149975998 + AluSx SINE Alu 1 294 -18 1278 244 144 59 chr6 32439244 32439496 -149975746 + L1MC4a LINE L1 6636 6865 -943 2087 112 3 0 chr6 32439498 32439793 -149975449 + AluSx SINE Alu 8 303 -9 454 231 0 8 chr6 32439853 32439972 -149975270 + L1MC4 LINE L1 7915 8042 0 468 216 43 35 chr6 32441767 32441883 -149973359 - MER5A DNA MER1_type 0 189 73 575 69 0 0 chr6 32443284 32443356 -149971886 - tRNA-Ala-GCG tRNA tRNA -3 72 1 781 173 7 0 chr6 32443837 32443976 -149971266 + FRAM SINE Alu 1 137 -39 383 123 0 27 chr6 32443976 32444049 -149971193 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 778 178 35 96 chr6 32445200 32445327 -149969915 + MER33 DNA MER1_type 1 123 -2501 1827 127 13 47 chr6 32445327 32445627 -149969615 - AluSg SINE Alu -20 290 1 778 178 35 96 chr6 32445627 32445739 -149969503 + MER33 DNA MER1_type 123 240 -2384 1314 109 20 5 chr6 32445739 32445941 -149969301 + L1PA16 LINE L1 5952 6156 -10 1939 143 0 0 chr6 32445941 32446244 -149968998 - AluSx SINE Alu 0 308 6 778 178 35 96 chr6 32446244 32446363 -149968879 + MER33 DNA MER1_type 238 352 -11 2252 118 3 0 chr6 32446752 32446926 -149968316 - AluSq SINE Alu -7 306 129 321 26 0 0 chr6 32446926 32446964 -149968278 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2252 118 3 0 chr6 32446964 32447094 -149968148 - AluSq SINE Alu -184 129 1 195 114 0 0 chr6 32447375 32447410 -149967832 + (A)n Simple_repeat Simple_repeat 1 35 0 2214 133 0 0 chr6 32447535 32447843 -149967399 + AluSg SINE Alu 1 308 -2 1569 161 7 56 chr6 32447977 32448281 -149966961 + AluJb SINE Alu 6 294 -18 2460 58 3 0 chr6 32448284 32448576 -149966666 + AluY SINE Alu 1 293 -18 2280 58 41 7 chr6 32448638 32448930 -149966312 - AluY SINE Alu -9 302 1 203 133 0 0 chr6 32449222 32449252 -149965990 + (CATA)n Simple_repeat Simple_repeat 2 31 0 619 27 0 14 chr6 32449365 32449439 -149965803 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2259 105 7 0 chr6 32449653 32449957 -149965285 + AluSx SINE Alu 1 306 -6 561 145 30 6 chr6 32450334 32450500 -149964742 + (TA)n Simple_repeat Simple_repeat 1 170 0 205 61 20 61 chr6 32450499 32450548 -149964694 + (GA)n Simple_repeat Simple_repeat 2 48 0 * 433 186 62 0 chr6 32450548 32450645 -149964597 - AluSc SINE Alu -30 279 177 2109 117 3 3 chr6 32452832 32453144 -149962098 + AluSp SINE Alu 1 312 0 308 278 0 0 chr6 32453468 32453540 -149961702 - tRNA-Ala-GCG tRNA tRNA -3 72 1 1506 258 154 40 chr6 32453763 32454537 -149960705 + L1MC4a LINE L1 6234 7095 -713 532 72 0 4 chr6 32454537 32454759 -149960483 + AluSp SINE Alu 1 309 0 1526 221 110 27 chr6 32454760 32455249 -149959993 + L1MC4 LINE L1 7389 7918 -124 204 40 0 0 chr6 32455254 32455279 -149959963 + (CA)n Simple_repeat Simple_repeat 2 26 0 2098 123 3 3 chr6 32455458 32455759 -149959483 - AluSp SINE Alu -12 301 1 416 235 0 0 chr6 32455759 32455840 -149959402 - Tigger3(Golem) DNA MER2_type -2948 81 1 599 143 9 9 chr6 32455841 32455946 -149959296 + MLT1D LTR MaLR 398 502 -3 11850 51 0 38 chr6 32456034 32458299 -149956943 + L1PA6 LINE L1 3923 6154 0 2456 66 0 35 chr6 32458315 32458633 -149956609 + AluY SINE Alu 1 307 -4 21 36 0 0 chr6 32458889 32458917 -149956325 + AT_rich Low_complexity Low_complexity 1 28 0 2057 133 3 0 chr6 32458920 32459221 -149956021 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr6 32459261 32459289 -149955953 + AT_rich Low_complexity Low_complexity 1 28 0 2520 53 0 37 chr6 32460539 32460862 -149954380 + AluY SINE Alu 1 311 0 1281 116 0 0 chr6 32461677 32461850 -149953392 - AluSg/x SINE Alu -12 298 126 2349 76 20 3 chr6 32462895 32463196 -149952046 + AluSg SINE Alu 1 306 -4 301 234 224 0 chr6 32463431 32463538 -149951704 - MER5A DNA MER1_type -14 175 45 2168 66 40 23 chr6 32463876 32464177 -149951065 + AluY SINE Alu 1 306 -5 508 97 0 0 chr6 32464500 32464572 -149950670 - tRNA-Ala-GCG tRNA tRNA -3 72 1 515 293 137 35 chr6 32465576 32466620 -149948622 + L1MB2 LINE L1 2683 3832 -2314 1254 151 0 5 chr6 32466655 32466873 -149948369 + L1MA4A LINE L1 5852 6068 -235 1149 136 0 0 chr6 32466873 32467042 -149948200 - AluSg/x SINE Alu -7 303 135 1035 74 40 7 chr6 32467043 32467192 -149948050 + L1MA4A LINE L1 6070 6223 -80 841 278 64 40 chr6 32467211 32467414 -149947828 + L1MC/D LINE L1 5468 5665 -2143 1856 165 0 23 chr6 32467414 32467742 -149947500 + AluSx SINE Alu 1 312 0 841 278 64 40 chr6 32467742 32467800 -149947442 + L1MC/D LINE L1 5665 5720 -2088 1625 101 167 8 chr6 32467800 32468058 -149947184 + AluSc SINE Alu 1 299 0 841 278 64 40 chr6 32468058 32468141 -149947101 + L1MC/D LINE L1 5720 5821 -1987 1185 164 15 5 chr6 32468159 32468360 -149946882 + LTR48B LTR ERV1 442 644 0 1907 318 59 34 chr6 32468369 32468607 -149946635 + L1M4b LINE L1 469 700 -6159 2374 102 0 6 chr6 32468607 32468920 -149946322 + AluSx SINE Alu 1 311 -1 1907 318 59 34 chr6 32468920 32469440 -149945802 + L1M4b LINE L1 700 1246 -5613 6357 184 23 40 chr6 32469449 32469561 -149945681 + L1MB2 LINE L1 3851 3963 -2220 2341 86 0 10 chr6 32469561 32469875 -149945367 + AluY SINE Alu 1 311 0 6357 184 23 40 chr6 32469875 32470079 -149945163 + L1MB2 LINE L1 3963 4169 -2014 1662 164 17 7 chr6 32470079 32470378 -149944864 + AluJb SINE Alu 7 308 -4 6357 184 23 40 chr6 32470378 32471020 -149944222 + L1MB2 LINE L1 4169 4820 -1363 2149 107 0 27 chr6 32471020 32471318 -149943924 + AluSg SINE Alu 1 290 -20 6357 184 23 40 chr6 32471318 32472127 -149943115 + L1MB2 LINE L1 4820 5589 -594 225 94 0 0 chr6 32472133 32472165 -149943077 + (TA)n Simple_repeat Simple_repeat 1 32 0 3134 143 54 17 chr6 32472168 32472928 -149942314 + MER21A LTR ERV1 20 931 0 2819 168 40 18 chr6 32472932 32473487 -149941755 + L1MB2 LINE L1 5587 6153 -18 1879 137 20 7 chr6 32473537 32473829 -149941413 + AluSx SINE Alu 1 296 -16 878 263 57 9 chr6 32473833 32474183 -149941059 + L1 LINE L1 2945 3311 -2835 1873 142 59 0 chr6 32474187 32474475 -149940767 + AluSg SINE Alu 5 309 -1 40294 76 5 9 chr6 32474509 32475964 -149939278 + L1PA5 LINE L1 12 1470 -4684 2538 68 0 0 chr6 32475964 32476274 -149938968 + AluY SINE Alu 1 310 -1 40294 76 5 9 chr6 32476274 32480980 -149934262 + L1PA5 LINE L1 1470 6152 -2 2128 128 0 3 chr6 32481071 32481367 -149933875 - AluSx SINE Alu -17 295 1 380 118 11 0 chr6 32481318 32481383 -149933859 - Alu SINE Alu -254 49 1 459 271 53 79 chr6 32481722 32481869 -149933373 - L1MEd LINE L1 -4929 1190 1041 2213 112 3 0 chr6 32481869 32482163 -149933079 - AluY SINE Alu -15 296 2 459 271 53 79 chr6 32482163 32482469 -149932773 - L1MEd LINE L1 -5078 1041 749 403 71 24 36 chr6 32482470 32482554 -149932688 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 323 322 86 39 chr6 32482557 32482790 -149932452 - L1MEd LINE L1 -5359 760 517 2734 125 7 40 chr6 32483287 32483566 -149931676 + MER57B LTR ERV1 1 261 -173 2200 95 0 33 chr6 32483566 32483872 -149931370 - AluSg SINE Alu -14 296 1 2734 125 7 40 chr6 32483872 32484041 -149931201 + MER57B LTR ERV1 261 434 0 2419 70 7 0 chr6 32484200 32484498 -149930744 + AluSp SINE Alu 1 300 -13 24 0 0 0 chr6 32485056 32485080 -149930162 + AT_rich Low_complexity Low_complexity 1 24 0 1755 186 32 6 chr6 32485178 32485517 -149929725 - MER7A DNA MER2_type 0 346 1 566 197 17 26 chr6 32486297 32486414 -149928828 + MER3 DNA MER1_type 2 117 -92 3823 132 60 50 chr6 32486631 32487315 -149927927 + LTR8 LTR ERV1 1 691 0 535 153 0 0 chr6 32488176 32488261 -149926981 + MER50 LTR ERV1 145 229 -505 * 1438 162 18 42 chr6 32488255 32488539 -149926703 + MER50 LTR ERV1 433 709 -25 1981 102 0 62 chr6 32488826 32489148 -149926094 + AluSx SINE Alu 1 302 -10 508 97 0 0 chr6 32489741 32489813 -149925429 - tRNA-Ala-GCG tRNA tRNA -3 72 1 858 221 75 29 chr6 32490954 32491192 -149924050 + MER39 LTR ERV1 288 536 -171 1398 177 108 23 chr6 32491192 32491543 -149923699 - MER6 DNA MER2_type -1 864 484 7320 151 150 30 chr6 32491547 32493060 -149922182 - pTR5 LTR ERV1 0 2438 744 1299 213 28 32 chr6 32493060 32493288 -149921954 - MER6 DNA MER2_type -392 473 246 180 77 0 0 chr6 32493288 32493314 -149921928 + (CA)n Simple_repeat Simple_repeat 1 26 0 1299 213 28 32 chr6 32493314 32493506 -149921736 - MER6 DNA MER2_type -619 246 1 533 239 43 25 chr6 32493511 32493589 -149921653 + MER39 LTR ERV1 537 612 -95 2362 103 3 3 chr6 32493589 32493899 -149921343 - AluSp SINE Alu -3 310 1 533 239 43 25 chr6 32493899 32493983 -149921259 + MER39 LTR ERV1 612 702 -5 247 143 0 0 chr6 32494147 32494182 -149921060 - 7SK RNA RNA -158 35 1 205 281 0 0 chr6 32494193 32494250 -149920992 + MER5B DNA MER1_type 122 178 0 2496 126 62 3 chr6 32494329 32494717 -149920525 - LTR57 LTR ERVL 0 411 1 9017 135 20 20 chr6 32494717 32495378 -149919864 - LTR57-int LTR ERVL 0 5343 4683 2482 70 0 7 chr6 32495378 32495679 -149919563 - AluY SINE Alu -12 299 1 9017 135 20 20 chr6 32495679 32496351 -149918891 - LTR57-int LTR ERVL -660 4683 4007 2317 113 0 0 chr6 32496351 32496652 -149918590 - AluSx SINE Alu -11 301 1 9017 135 20 20 chr6 32496652 32496690 -149918552 - LTR57-int LTR ERVL -1335 4008 3971 788 153 0 0 chr6 32496678 32496796 -149918446 - LTR57-int LTR ERVL -2176 3167 3050 * 7614 128 36 11 chr6 32496787 32497924 -149917318 - LTR57-int LTR ERVL -2573 2770 1605 4064 175 31 68 chr6 32497934 32499210 -149916032 - pTR5 LTR ERV1 -143 2295 746 10238 109 28 35 chr6 32499210 32500005 -149915237 - LTR57-int LTR ERVL -3734 1609 810 2241 115 0 3 chr6 32500005 32500317 -149914925 + AluSq SINE Alu 1 311 -2 10238 109 28 35 chr6 32500317 32500623 -149914619 - LTR57-int LTR ERVL -4533 810 503 2622 60 33 0 chr6 32500623 32500956 -149914286 - LTR14A LTR ERVK 0 344 1 1934 97 86 0 chr6 32500964 32501233 -149914009 + AluSg SINE Alu 1 292 -18 10238 109 28 35 chr6 32501233 32501741 -149913501 - LTR57-int LTR ERVL -4847 496 1 2517 134 32 29 chr6 32501741 32501926 -149913316 - LTR57 LTR ERVL 0 411 228 2038 121 13 0 chr6 32501926 32502224 -149913018 - AluSx SINE Alu -10 302 1 2517 134 32 29 chr6 32502224 32502447 -149912795 - LTR57 LTR ERVL -183 228 2 675 225 67 11 chr6 32502644 32502822 -149912420 - MER5A DNA MER1_type 0 189 2 2255 95 0 52 chr6 32503416 32503742 -149911500 + AluSq SINE Alu 1 309 -4 189 0 0 0 chr6 32504033 32504054 -149911188 + (CA)n Simple_repeat Simple_repeat 2 22 0 470 105 13 13 chr6 32504243 32504319 -149910923 + AluJ/FRAM SINE Alu 226 301 -11 312 260 42 0 chr6 32505467 32505563 -149909679 - L1ME4a LINE L1 -199 5922 5823 1861 115 25 7 chr6 32505648 32505926 -149909316 + AluJb SINE Alu 5 287 -25 2033 117 16 13 chr6 32505934 32506242 -149909000 + AluSx SINE Alu 1 309 -3 578 56 0 0 chr6 32507444 32507515 -149907727 + tRNA-Arg-CGA tRNA tRNA 1 71 -5 229 294 56 24 chr6 32507619 32507745 -149907497 - L2 LINE L2 -18 3295 3166 272 252 107 29 chr6 32508577 32508680 -149906562 - MIR SINE MIR -93 169 59 2320 72 0 33 chr6 32508801 32509105 -149906137 - AluSc SINE Alu -15 294 1 1257 159 4 53 chr6 32509140 32509367 -149905875 - AluJo SINE Alu -83 229 14 2539 202 46 70 chr6 32509377 32510234 -149905008 - L1MB4 LINE L1 -216 5964 5133 584 185 74 0 chr6 32510238 32510346 -149904896 - AluSg/x SINE Alu -18 294 179 3726 193 68 19 chr6 32510347 32511462 -149903780 - pTR5 LTR ERV1 -1 2605 1524 5314 139 48 53 chr6 32511467 32512487 -149902755 + pTR5 LTR ERV1 1419 2433 -5 1887 112 73 21 chr6 32512799 32513086 -149902156 + AluY SINE Alu 1 302 -9 2173 87 30 7 chr6 32513188 32513487 -149901755 + AluSg SINE Alu 1 306 -4 1915 139 13 28 chr6 32514166 32514483 -149900759 - AluJb SINE Alu 0 312 1 1649 172 27 30 chr6 32516016 32516313 -149898929 + AluJb SINE Alu 3 298 -14 355 289 191 3 chr6 32516457 32516640 -149898602 + MIR SINE MIR 49 262 0 2471 61 3 0 chr6 32517249 32517544 -149897698 + AluY SINE Alu 1 296 -15 1753 106 24 0 chr6 32517632 32517878 -149897364 + AluSx SINE Alu 1 252 -60 288 0 0 0 chr6 32517881 32517913 -149897329 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1665 126 0 8 chr6 32517925 32518164 -149897078 - AluSx SINE Alu -44 268 32 639 143 0 19 chr6 32518265 32518358 -149896884 + FRAM SINE Alu 57 149 -163 270 0 0 0 chr6 32518358 32518388 -149896854 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 639 143 0 19 chr6 32518388 32518399 -149896843 + FRAM SINE Alu 149 159 -17 820 166 112 34 chr6 32518401 32518606 -149896636 + L1MB8 LINE L1 5957 6177 -1 1791 145 0 4 chr6 32519159 32519421 -149895821 + AluSx SINE Alu 32 292 -20 238 36 0 0 chr6 32519421 32519449 -149895793 + (GA)n Simple_repeat Simple_repeat 1 28 0 470 148 0 11 chr6 32519451 32519539 -149895703 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 572 137 0 11 chr6 32519617 32519712 -149895530 - AluJ/FLAM SINE Alu -217 95 2 532 194 46 51 chr6 32520299 32520441 -149894801 - MER87 LTR ERV1 -1 555 396 2432 99 0 0 chr6 32520469 32520781 -149894461 - AluSx SINE Alu 0 312 1 2281 70 3 34 chr6 32520792 32521133 -149894109 - AluY SINE Alu 0 332 1 2544 40 10 3 chr6 32521873 32522174 -149893068 - AluY SINE Alu -6 305 3 533 9 9 224 chr6 32522274 32522381 -149892861 - tRNA-Leu-TTG tRNA tRNA -2 84 1 180 0 0 0 chr6 32522624 32522644 -149892598 + (T)n Simple_repeat Simple_repeat 1 20 0 184 170 0 85 chr6 32523315 32523362 -149891880 + L2 LINE L2 3253 3295 -18 277 275 233 13 chr6 32523787 32524161 -149891081 - L1ME4a LINE L1 -49 6072 5617 2482 69 3 0 chr6 32524161 32524464 -149890778 - AluSg SINE Alu -6 304 1 1996 125 20 14 chr6 32524483 32524780 -149890462 - AluSx SINE Alu -12 300 2 2131 105 0 14 chr6 32525203 32525497 -149889745 - AluSg SINE Alu -20 290 1 2121 101 42 0 chr6 32525560 32525846 -149889396 - AluSx SINE Alu -12 300 3 25 75 0 0 chr6 32525893 32525946 -149889296 + AT_rich Low_complexity Low_complexity 1 53 0 268 262 62 41 chr6 32526185 32526330 -149888912 + L1MC5 LINE L1 7754 7901 -60 847 201 0 0 chr6 32526746 32526895 -149888347 + FRAM SINE Alu 1 146 -30 545 273 71 0 chr6 32528076 32528230 -149887012 + MIR SINE MIR 48 212 -50 2283 85 3 3 chr6 32528542 32528835 -149886407 + AluSg SINE Alu 1 293 -17 1623 191 18 7 chr6 32530983 32531261 -149883981 - AluJo SINE Alu -30 282 2 554 288 42 12 chr6 32531287 32531564 -149883678 - MER46C DNA MER2_type 0 338 1 648 201 167 14 chr6 32531605 32531749 -149883493 - FRAM SINE Alu 0 166 1 1475 151 97 32 chr6 32532001 32532279 -149882963 + AluJo SINE Alu 12 307 -5 29 0 0 0 chr6 32532279 32532308 -149882934 + AT_rich Low_complexity Low_complexity 1 29 0 240 227 61 83 chr6 32532516 32532648 -149882594 + L2 LINE L2 3185 3313 0 562 282 168 5 chr6 32534217 32534426 -149880816 - MIR SINE MIR -5 257 15 2309 65 10 0 chr6 32535165 32535459 -149879783 - AluSp SINE Alu -16 297 1 363 204 70 34 chr6 32535867 32535997 -149879245 + MLT1J LTR MaLR 1 173 -315 805 153 0 22 chr6 32536051 32536188 -149879054 + FLAM_C SINE Alu 10 143 0 454 294 101 55 chr6 32536240 32536377 -149878865 + MLT1J LTR MaLR 274 426 -85 2153 121 0 0 chr6 32536377 32536682 -149878560 - AluSx SINE Alu -7 305 1 454 294 101 55 chr6 32536682 32536762 -149878480 + MLT1J LTR MaLR 426 501 -10 309 159 79 0 chr6 32538096 32538159 -149877083 - L1MC4 LINE L1 0 8042 7975 2079 109 0 3 chr6 32538159 32538453 -149876789 - AluSq SINE Alu -11 302 10 232 88 0 0 chr6 32538459 32538493 -149876749 - L1MC4a LINE L1 -1869 5939 5906 327 87 0 0 chr6 32538515 32538561 -149876681 + AluSp/q SINE Alu 254 299 -4 685 264 43 22 chr6 32538561 32538837 -149876405 - L1MC4a LINE L1 -1893 5915 5634 686 211 33 17 chr6 32538846 32539026 -149876216 - L1MA4 LINE L1 -5 6295 6113 2368 67 3 0 chr6 32539026 32539323 -149875919 + AluSp SINE Alu 1 298 -15 251 157 20 0 chr6 32539323 32539374 -149875868 + (TA)n Simple_repeat Simple_repeat 1 52 0 631 150 53 0 chr6 32539374 32539507 -149875735 - L1MA4 LINE L1 -175 6125 5986 1128 245 50 18 chr6 32539548 32539887 -149875355 - L1MC4a LINE L1 -2204 5604 5255 746 124 0 0 chr6 32540076 32540181 -149875061 - FRAM SINE Alu -14 162 58 2113 114 3 0 chr6 32540190 32540487 -149874755 - AluSx SINE Alu -14 298 1 610 154 24 57 chr6 32540629 32540752 -149874490 + L1PB4 LINE L1 6000 6118 -38 238 282 36 49 chr6 32540806 32541190 -149874052 - L1MC4a LINE L1 -1617 4529 4034 222 37 0 0 chr6 32541346 32541373 -149873869 + (A)n Simple_repeat Simple_repeat 1 27 0 1979 119 20 10 chr6 32541379 32541672 -149873570 + AluSx SINE Alu 1 296 -16 557 192 29 0 chr6 32541693 32541797 -149873445 + U6 snRNA snRNA 1 107 0 1633 162 62 125 chr6 32541804 32541981 -149873261 + L1MB5 LINE L1 5694 5880 -294 2219 87 0 0 chr6 32541981 32542267 -149872975 - AluSg SINE Alu -24 286 1 1633 162 62 125 chr6 32542267 32542323 -149872919 + L1MB5 LINE L1 5880 5938 -236 2237 91 3 0 chr6 32542323 32542619 -149872623 + AluSp SINE Alu 1 297 -16 1633 162 62 125 chr6 32542619 32542897 -149872345 + L1MB5 LINE L1 5938 6174 0 1910 162 0 6 chr6 32542912 32543226 -149872016 + AluJb SINE Alu 1 312 0 241 341 49 0 chr6 32543237 32543319 -149871923 + L2 LINE L2 1101 1186 -2128 2209 109 0 0 chr6 32543349 32543652 -149871590 + AluSx SINE Alu 1 303 -9 2243 97 10 0 chr6 32543870 32544180 -149871062 - AluSp SINE Alu 0 313 1 436 342 68 9 chr6 32544347 32544569 -149870673 + L2 LINE L2 1760 1994 -1320 204 97 0 0 chr6 32544581 32544612 -149870630 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2199 96 0 0 chr6 32544650 32544942 -149870300 + AluSg SINE Alu 1 292 -18 291 181 250 0 chr6 32544960 32545032 -149870210 - MER58 DNA MER1_type -2330 90 1 2005 123 7 3 chr6 32545056 32545364 -149869878 - AluSg1 SINE Alu 0 309 1 247 320 64 0 chr6 32545446 32545524 -149869718 + L2 LINE L2 3189 3271 -1 421 333 12 19 chr6 32545679 32545841 -149869401 - MIR3 SINE MIR -6 202 42 1998 128 14 0 chr6 32547153 32547449 -149867793 + AluSp SINE Alu 1 300 -13 182 206 0 0 chr6 32548758 32548792 -149866450 - MIR SINE MIR -84 124 91 2127 88 10 3 chr6 32550351 32550656 -149864586 + AluSc SINE Alu 1 307 -2 350 210 50 20 chr6 32550865 32550965 -149864277 + MIR SINE MIR 57 159 -103 450 88 15 0 chr6 32551318 32551386 -149863856 - MER41B LTR ERV1 -87 548 480 360 250 167 0 chr6 32551393 32551477 -149863765 + MER115 DNA AcHobo 50 147 -546 1988 144 0 0 chr6 32551867 32552173 -149863069 + AluSx SINE Alu 1 306 -6 686 172 0 47 chr6 32552335 32552463 -149862779 - FLAM_C SINE Alu -11 122 1 2213 67 0 0 chr6 32552865 32553147 -149862095 + AluSg SINE Alu 6 287 -23 2413 44 0 10 chr6 32553166 32553463 -149861779 - AluY SINE Alu -17 294 1 2012 110 13 3 chr6 32553481 32553780 -149861462 + AluSx SINE Alu 1 302 -10 328 201 82 90 chr6 32553825 32553916 -149861326 + L2 LINE L2 1879 1970 -1344 2188 147 77 33 chr6 32553916 32554345 -149860897 + MER83 LTR ERV1 1 448 0 328 201 82 90 chr6 32554345 32554387 -149860855 + L2 LINE L2 1970 2011 -1303 1799 136 36 7 chr6 32554620 32554921 -149860321 + AluSx SINE Alu 3 312 0 602 277 138 64 chr6 32554964 32555419 -149859823 + L1MC4a LINE L1 4903 5391 -755 501 306 93 50 chr6 32555422 32555559 -149859683 + L1MC4a LINE L1 5438 5568 -2240 2175 113 3 0 chr6 32555559 32555870 -149859372 + AluSp SINE Alu 1 312 -1 501 306 93 50 chr6 32555870 32556108 -149859134 + L1MC4a LINE L1 5568 5829 -1979 692 122 0 9 chr6 32556110 32556225 -149859017 + (GAA)n Simple_repeat Simple_repeat 1 114 0 693 286 98 19 chr6 32556264 32556530 -149858712 - L2 LINE L2 0 3313 3027 3261 164 64 22 chr6 32556572 32556839 -149858403 + L1MD2 LINE L1 5639 5893 -466 1647 166 3 24 chr6 32556839 32557173 -149858069 - AluSx SINE Alu 0 328 1 3261 164 64 22 chr6 32557173 32557526 -149857716 + L1MD2 LINE L1 5893 6294 -65 1963 152 0 0 chr6 32557526 32557836 -149857406 - AluSx SINE Alu -2 310 1 3261 164 64 22 chr6 32557836 32557904 -149857338 + L1MD2 LINE L1 6294 6358 -1 281 238 29 48 chr6 32558001 32558106 -149857136 - MLT1L LTR MaLR -379 236 134 262 268 0 0 chr6 32558318 32558374 -149856868 - L2 LINE L2 -73 3199 3144 1086 138 0 6 chr6 32558467 32558627 -149856615 + FRAM SINE Alu 1 158 -18 2163 122 3 0 chr6 32558627 32558939 -149856303 + AluSp SINE Alu 1 313 0 362 302 20 27 chr6 32558949 32559098 -149856144 + MLT1H LTR MaLR 95 242 -307 1432 157 69 91 chr6 32559118 32559437 -149855805 - MLT1B LTR MaLR -2 388 77 1933 130 7 0 chr6 32559437 32559722 -149855520 + AluSx SINE Alu 8 294 -18 1432 157 69 91 chr6 32559722 32559777 -149855465 - MLT1B LTR MaLR -313 77 22 352 229 150 29 chr6 32559872 32560012 -149855230 + MLT1H LTR MaLR 298 454 -101 214 233 0 0 chr6 32560181 32560224 -149855018 + L3 LINE CR1 1179 1221 -356 1024 137 31 97 chr6 32560394 32560436 -149854806 - MSTA LTR MaLR 0 428 385 1950 125 0 14 chr6 32560436 32560750 -149854492 + AluSx SINE Alu 1 312 0 1024 137 31 97 chr6 32560750 32560864 -149854378 - MSTA LTR MaLR -43 385 289 2021 117 7 3 chr6 32560864 32561171 -149854071 - AluSq SINE Alu -5 308 1 1024 137 31 97 chr6 32561171 32561240 -149854002 - MSTA LTR MaLR -139 289 217 453 132 0 121 chr6 32561245 32561336 -149853906 - MSTA LTR MaLR -348 80 1 799 216 69 53 chr6 32561405 32561650 -149853592 - L1ME3 LINE L1 -4 6158 5910 1304 204 82 29 chr6 32561663 32562006 -149853236 - L1ME3 LINE L1 -418 5744 5384 1305 142 26 71 chr6 32562017 32562284 -149852958 - AluJb SINE Alu -57 255 1 718 243 39 24 chr6 32562284 32562460 -149852782 - L1ME3 LINE L1 -760 5386 5203 2246 88 13 10 chr6 32562460 32562768 -149852474 - AluSc SINE Alu 0 309 1 718 243 39 24 chr6 32562768 32562846 -149852396 - L1ME3 LINE L1 -943 5203 5128 884 155 0 19 chr6 32562876 32563037 -149852205 - FAM SINE Alu -15 170 13 397 299 103 0 chr6 32563040 32563254 -149851988 - L1ME3 LINE L1 -1011 5135 4900 1720 115 93 11 chr6 32563372 32563504 -149851738 - AluSx SINE Alu -21 291 171 1934 109 0 30 chr6 32563504 32563806 -149851436 - AluSc SINE Alu -16 293 1 1720 115 93 11 chr6 32563806 32563942 -149851300 - AluSx SINE Alu -141 171 1 1785 107 44 4 chr6 32564342 32564614 -149850628 - AluSq SINE Alu -30 283 1 747 240 83 47 chr6 32564642 32565621 -149849621 - HAL1 LINE L1 -342 2165 1061 2073 102 24 0 chr6 32565621 32565916 -149849326 + AluSp SINE Alu 1 302 -11 747 240 83 47 chr6 32565916 32566226 -149849016 - HAL1 LINE L1 -1446 1061 764 545 9 9 217 chr6 32567107 32567213 -149848029 + tRNA-Leu-TTG tRNA tRNA 1 84 -2 679 0 0 0 chr6 32567655 32567727 -149847515 - tRNA-Gln-CAG tRNA tRNA -3 72 1 357 93 0 0 chr6 32568279 32568333 -149846909 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 734 0 0 0 chr6 32569676 32569758 -149845484 - tRNA-Leu-CTT tRNA tRNA -3 82 1 524 83 0 0 chr6 32570630 32570702 -149844540 + tRNA-Met-e tRNA tRNA 1 72 -3 656 241 95 60 chr6 32571480 32571916 -149843326 + LTR50 LTR ERVL 10 655 -130 2183 100 0 0 chr6 32571944 32572235 -149843007 - AluSx SINE Alu -21 291 1 1297 275 28 38 chr6 32572265 32572735 -149842507 - L2 LINE L2 -55 3258 2791 243 317 32 73 chr6 32572808 32572861 -149842381 - MER5A DNA MER1_type -67 122 68 2104 102 7 0 chr6 32572861 32573156 -149842086 - AluSp SINE Alu -16 297 1 243 317 32 73 chr6 32573156 32573225 -149842017 - MER5A DNA MER1_type -121 68 5 1875 151 0 3 chr6 32573457 32573761 -149841481 - AluSx SINE Alu 0 312 10 288 276 92 41 chr6 32573898 32574094 -149841148 + L2 LINE L2 2553 2758 -556 242 319 14 0 chr6 32574306 32574378 -149840864 + L2 LINE L2 2995 3067 -205 4661 145 44 60 chr6 32574971 32576413 -149838829 - pTR5 LTR ERV1 0 2438 75 2073 77 21 3 chr6 32576483 32576768 -149838474 - AluSc SINE Alu -16 293 4 680 0 0 0 chr6 32577083 32577156 -149838086 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2144 54 54 7 chr6 32577646 32577941 -149837301 + AluY SINE Alu 1 309 -2 1880 93 7 0 chr6 32577953 32578223 -149837019 + AluSx SINE Alu 5 276 -36 24 53 0 0 chr6 32578223 32578261 -149836981 + AT_rich Low_complexity Low_complexity 1 38 0 340 273 120 69 chr6 32578745 32578961 -149836281 - L2 LINE L2 -4 3309 3083 524 83 0 0 chr6 32579319 32579391 -149835851 - tRNA-Met-e tRNA tRNA -3 72 1 22 35 0 0 chr6 32579467 32579496 -149835746 + AT_rich Low_complexity Low_complexity 1 29 0 271 231 0 15 chr6 32580169 32580234 -149835008 - MER81 DNA DNA -15 99 36 2187 86 0 3 chr6 32580576 32580877 -149834365 - AluSq SINE Alu -13 300 1 2146 92 0 3 chr6 32581770 32582076 -149833166 + AluSq SINE Alu 1 305 0 999 181 93 1 chr6 32582420 32582841 -149832401 - LTR54B LTR ERV1 -2 496 8 519 129 0 21 chr6 32583013 32583106 -149832136 - AluSg/x SINE Alu -3 306 216 7105 138 108 109 chr6 32583715 32585416 -149829826 + pTR5 LTR ERV1 741 2438 0 2425 58 0 14 chr6 32586029 32586360 -149828882 - AluY SINE Alu 0 311 1 292 230 23 11 chr6 32586361 32586448 -149828794 - L2 LINE L2 -1306 2008 1921 11831 165 119 8 chr6 32586466 32588100 -149827142 + L1PB1 LINE L1 6 1990 -4873 2092 135 24 0 chr6 32588100 32588388 -149826854 + AluSx SINE Alu 1 295 -17 11831 165 119 8 chr6 32588388 32589137 -149826105 + L1PB1 LINE L1 1990 2654 -4209 2509 57 0 3 chr6 32589137 32589437 -149825805 + AluY SINE Alu 1 299 -12 14539 176 12 14 chr6 32589439 32590669 -149824573 + L1PB1 LINE L1 2998 4230 -2637 2214 127 3 3 chr6 32590669 32590977 -149824265 + AluSq SINE Alu 1 308 -5 1890 131 30 7 chr6 32590983 32591280 -149823962 + AluSx SINE Alu 1 304 -8 14539 176 12 14 chr6 32591280 32593646 -149821596 + L1PB1 LINE L1 4235 6593 -274 2141 127 7 0 chr6 32593646 32593954 -149821288 - AluSx SINE Alu -2 310 1 14539 176 12 14 chr6 32593954 32594221 -149821021 + L1PB1 LINE L1 6593 6859 -8 363 220 28 9 chr6 32594257 32594366 -149820876 - L2 LINE L2 -1378 1936 1826 2197 178 48 111 chr6 32594424 32595092 -149820150 + LTR8A LTR ERV1 34 659 -68 219 36 0 0 chr6 32595093 32595121 -149820121 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 283 132 44 187 chr6 32596522 32596613 -149818629 + LTR8A LTR ERV1 650 727 0 277 289 209 21 chr6 32596625 32596860 -149818382 - L2 LINE L2 -2236 1078 800 378 282 28 7 chr6 32596862 32597004 -149818238 - MER112 DNA MER1_type -8 252 108 1121 195 0 10 chr6 32597420 32597625 -149817617 + AluSq SINE Alu 1 203 -110 608 88 33 103 chr6 32597625 32597799 -149817443 + AluSg/x SINE Alu 67 296 -16 233 206 63 0 chr6 32597799 32597862 -149817380 - L1MC4 LINE L1 -1340 6702 6636 2484 43 0 0 chr6 32598095 32598405 -149816837 - AluY SINE Alu 0 310 1 2611 43 0 7 chr6 32598627 32598926 -149816316 - AluY SINE Alu -14 297 1 2501 64 0 6 chr6 32598959 32599271 -149815971 - AluY SINE Alu -1 310 1 2074 93 3 21 chr6 32599301 32599626 -149815616 - AluY SINE Alu 0 320 1 227 329 0 0 chr6 32599757 32599839 -149815403 + L2 LINE L2 2601 2682 -632 1986 122 51 0 chr6 32600025 32600321 -149814921 - AluSx SINE Alu -1 311 1 1616 224 193 24 chr6 32600555 32601090 -149814152 + MLT1E2 LTR MaLR 2 626 0 776 241 107 88 chr6 32601090 32601572 -149813670 - MLT1F LTR MaLR -49 506 1 2002 120 0 30 chr6 32601612 32601912 -149813330 - AluSx SINE Alu -13 299 9 2284 78 0 14 chr6 32602234 32602567 -149812675 - AluY SINE Alu 0 311 1 779 99 21 14 chr6 32602870 32603012 -149812230 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 347 287 140 25 chr6 32603097 32603254 -149811988 + MER5A DNA MER1_type 14 188 -1 921 211 27 23 chr6 32603527 32603826 -149811416 + 7SLRNA srpRNA srpRNA 1 300 -20 2897 140 12 17 chr6 32604107 32604586 -149810656 + MER31A LTR ERV1 1 477 -8 4955 163 48 8 chr6 32604711 32605596 -149809646 + L1MD1 LINE L1 5323 6242 0 1770 213 54 82 chr6 32605681 32606311 -149808931 + LTR9 LTR ERV1 1 612 0 559 229 37 60 chr6 32607202 32607420 -149807822 + LTR7 LTR ERV1 238 450 0 679 0 0 0 chr6 32607724 32607797 -149807445 - tRNA-Phe-TTC tRNA tRNA -3 73 1 624 0 0 0 chr6 32608251 32608323 -149806919 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2291 104 0 0 chr6 32609326 32609625 -149805617 - AluSx SINE Alu -13 299 1 228 111 0 0 chr6 32610100 32610136 -149805106 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr6 32610384 32610408 -149804834 + (A)n Simple_repeat Simple_repeat 1 24 0 237 281 35 53 chr6 32610517 32610631 -149804611 + MIR SINE MIR 103 214 -48 2523 58 3 0 chr6 32610724 32611034 -149804208 - AluY SINE Alu 0 311 1 420 145 0 24 chr6 32611765 32611848 -149803394 + AluJo SINE Alu 45 125 -187 198 167 0 0 chr6 32611870 32611906 -149803336 + GA-rich Low_complexity Low_complexity 2 37 0 617 158 194 0 chr6 32611906 32612045 -149803197 + AluJo SINE Alu 120 285 -27 236 208 0 19 chr6 32612595 32612648 -149802594 + L2 LINE L2 3262 3313 0 2334 68 0 24 chr6 32613110 32613403 -149801839 + AluSg SINE Alu 1 286 -24 788 193 56 75 chr6 32613550 32613763 -149801479 + MLT1D LTR MaLR 296 504 -1 400 0 0 0 chr6 32613819 32613866 -149801376 + AluY SINE Alu 1 47 -265 326 0 0 0 chr6 32613866 32613902 -149801340 + AluY SINE Alu 9 44 -258 2093 74 53 3 chr6 32613902 32614186 -149801056 + AluSp SINE Alu 6 303 -10 716 12 0 0 chr6 32615053 32615135 -149800107 + tRNA-Leu-CTT tRNA tRNA 1 82 -3 1942 80 0 4 chr6 32615370 32615621 -149799621 - AluSx SINE Alu -62 250 1 184 339 0 0 chr6 32615891 32615950 -149799292 + L2 LINE L2 3000 3058 -214 205 226 48 0 chr6 32615994 32616056 -149799186 - L2 LINE L2 -63 3209 3145 1224 122 0 6 chr6 32616233 32616405 -149798837 - AluSx SINE Alu -141 171 1 596 261 122 84 chr6 32616405 32616822 -149798420 - L1M4 LINE L1 -2292 3854 3422 362 185 25 25 chr6 32616837 32616918 -149798324 + L1MC5 LINE L1 6776 6856 -1105 1523 209 41 102 chr6 32616937 32617219 -149798023 + L1MC5 LINE L1 7275 7573 -388 1906 139 68 0 chr6 32617219 32617500 -149797742 - AluJb SINE Alu -12 300 1 1523 209 41 102 chr6 32617500 32617630 -149797612 + L1MC5 LINE L1 7573 7709 -252 663 233 8 0 chr6 32617630 32617759 -149797483 - FLAM_A SINE Alu 0 133 4 1523 209 41 102 chr6 32617759 32617795 -149797447 + L1MC5 LINE L1 7709 7746 -215 2445 84 0 3 chr6 32617795 32618106 -149797136 - AluSx SINE Alu -2 310 1 1523 209 41 102 chr6 32618106 32618340 -149796902 + L1MC5 LINE L1 7746 7917 -44 2424 94 3 0 chr6 32618344 32618652 -149796590 - AluSp SINE Alu -4 309 1 1487 278 203 11 chr6 32618663 32619142 -149796100 - HAL1 LINE L1 -1679 828 442 1691 146 93 7 chr6 32619142 32619422 -149795820 - AluSx SINE Alu -8 304 1 1487 278 203 11 chr6 32619422 32619636 -149795606 - HAL1 LINE L1 -2065 442 2 210 327 58 29 chr6 32619991 32620095 -149795147 - L3 LINE CR1 -230 1347 1241 1901 103 114 0 chr6 32620199 32620471 -149794771 - AluSg1 SINE Alu -6 303 1 554 213 194 0 chr6 32620703 32620863 -149794379 + MIR SINE MIR 72 262 0 205 304 72 0 chr6 32620908 32621033 -149794209 - L2 LINE L2 -1148 2166 2033 282 265 135 60 chr6 32623329 32623514 -149791728 + MLT1K LTR MaLR 379 577 -11 265 365 0 0 chr6 32623609 32623724 -149791518 + L2 LINE L2 2644 2758 -556 467 203 34 74 chr6 32623744 32623892 -149791350 + MIR SINE MIR 3 144 -118 2022 122 0 72 chr6 32624222 32624543 -149790699 - AluSx SINE Alu -14 298 1 208 143 0 0 chr6 32625137 32625172 -149790070 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr6 32625471 32625501 -149789741 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chr6 32626510 32626550 -149788692 + (TG)n Simple_repeat Simple_repeat 2 41 0 2414 80 0 10 chr6 32626826 32627127 -149788115 - AluY SINE Alu -13 298 1 458 234 21 102 chr6 32627691 32627926 -149787316 - L1MC4 LINE L1 -1 8041 7826 414 232 1 1 chr6 32627949 32628048 -149787194 - L1ME2 LINE L1 -2 6168 6069 25 75 0 0 chr6 32628390 32628443 -149786799 + AT_rich Low_complexity Low_complexity 1 53 0 2292 120 0 0 chr6 32628672 32628972 -149786270 - AluSx SINE Alu -12 300 1 373 185 100 77 chr6 32630360 32630490 -149784752 + L2 LINE L2 2532 2664 -650 849 48 0 0 chr6 32630491 32630595 -149784647 - AluY SINE Alu 0 311 208 597 243 69 6 chr6 32630596 32630769 -149784473 + L2 LINE L2 2671 2854 -460 864 270 109 70 chr6 32630769 32631297 -149783945 + L2 LINE L2 2766 3313 0 241 23 0 45 chr6 32631342 32631386 -149783856 + Alu SINE Alu 256 297 -2 1013 232 102 68 chr6 32631946 32632635 -149782607 - L1MC5 LINE L1 -24 7937 7226 591 184 64 86 chr6 32632681 32632955 -149782287 - L1MC4 LINE L1 -770 7191 6973 1451 230 117 54 chr6 32632965 32633096 -149782146 + MLT1F LTR MaLR 1 122 -420 243 0 0 0 chr6 32633096 32633123 -149782119 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2005 143 7 0 chr6 32633125 32633411 -149781831 - AluSx SINE Alu -24 288 1 1451 230 117 54 chr6 32633411 32633719 -149781523 + MLT1F LTR MaLR 122 471 -71 894 262 31 18 chr6 32633911 32634197 -149781045 - L1MC4 LINE L1 -954 7088 6799 421 287 114 36 chr6 32634278 32634445 -149780797 + MIR SINE MIR 49 228 -34 254 330 23 0 chr6 32634470 32634558 -149780684 - MIR3 SINE MIR -22 186 97 575 311 56 0 chr6 32634770 32634950 -149780292 + MIR SINE MIR 59 248 -14 226 333 77 0 chr6 32635157 32635274 -149779968 - L3 LINE CR1 -1024 553 428 277 330 19 9 chr6 32635364 32635470 -149779772 - L3 LINE CR1 -1286 291 185 2065 110 169 82 chr6 32636419 32636884 -149778358 + L1MC1 LINE L1 5825 6333 0 358 167 176 28 chr6 32637232 32637340 -149777902 - L2 LINE L2 0 3313 3190 22 35 0 0 chr6 32637875 32637904 -149777338 + AT_rich Low_complexity Low_complexity 1 29 0 705 218 93 21 chr6 32637908 32638101 -149777141 - MIR SINE MIR -10 252 46 916 318 27 27 chr6 32638185 32638522 -149776720 + HERVL LTR ERVL 4243 4579 -1075 208 318 59 35 chr6 32638581 32638666 -149776576 - L2 LINE L2 -605 2709 2623 418 281 189 0 chr6 32639527 32639680 -149775562 - MIR SINE MIR -78 184 3 6300 161 163 27 chr6 32641003 32642495 -149772747 + pTR5 LTR ERV1 744 2438 0 971 186 32 84 chr6 32643606 32643802 -149771440 - L1MA4 LINE L1 -27 6273 6125 2201 92 3 0 chr6 32643802 32644085 -149771157 - AluSg SINE Alu -26 284 1 971 186 32 84 chr6 32644085 32644297 -149770945 - L1MA4 LINE L1 -175 6125 5903 6842 189 66 44 chr6 32644298 32646150 -149769092 - L1 LINE L1 -2337 3991 2182 1677 184 14 3 chr6 32646150 32646433 -149768809 - AluJb SINE Alu -26 286 1 6842 189 66 44 chr6 32646433 32647052 -149768190 - L1 LINE L1 -4146 2182 1578 2328 112 0 0 chr6 32647052 32647365 -149767877 - AluSq SINE Alu 0 313 1 6842 189 66 44 chr6 32647365 32647984 -149767258 - L1 LINE L1 -4750 1578 974 811 132 25 0 chr6 32647984 32648105 -149767137 - MSTA LTR MaLR 0 428 305 6842 189 66 44 chr6 32648105 32648792 -149766450 - L1 LINE L1 -5354 974 1 299 174 203 0 chr6 32649267 32649336 -149765906 - MER46C DNA MER2_type -209 129 47 562 197 111 0 chr6 32649339 32649456 -149765786 + FLAM_A SINE Alu 2 131 -2 1454 78 5 5 chr6 32649496 32649701 -149765541 - L1PB1 LINE L1 0 6151 5947 2235 104 0 3 chr6 32649852 32650149 -149765093 - AluSg SINE Alu -12 298 3 560 160 76 56 chr6 32650179 32650323 -149764919 - LTR45B LTR ERV1 0 489 343 238 188 62 47 chr6 32650420 32650484 -149764758 - MER72 LTR ERV1 -248 474 410 727 204 7 13 chr6 32651051 32651203 -149764039 - MER106A DNA MER1_type -84 152 2 21 36 0 0 chr6 32651257 32651285 -149763957 + AT_rich Low_complexity Low_complexity 1 28 0 849 72 64 0 chr6 32652137 32652262 -149762980 + L1PA14 LINE L1 6023 6155 -6 1821 147 6 19 chr6 32654835 32655149 -149760093 + AluSx SINE Alu 1 310 -2 1273 208 0 4 chr6 32655149 32655380 -149759862 - AluJb SINE Alu -39 273 44 669 291 57 5 chr6 32655733 32655943 -149759299 + MIR SINE MIR 11 231 -31 450 310 176 21 chr6 32656260 32656499 -149758743 - L3 LINE CR1 -12 1565 1290 239 297 62 62 chr6 32656568 32656713 -149758529 - L1ME3A LINE L1 -57 6113 5969 570 322 122 23 chr6 32656826 32657267 -149757975 - L3 LINE CR1 -310 1267 783 21 36 0 0 chr6 32657556 32657584 -149757658 + AT_rich Low_complexity Low_complexity 1 28 0 625 309 43 34 chr6 32657656 32657889 -149757353 + MIR SINE MIR 13 247 -15 2334 91 10 3 chr6 32658710 32659018 -149756224 + AluSp SINE Alu 1 310 -3 29 70 0 0 chr6 32659045 32659102 -149756140 + AT_rich Low_complexity Low_complexity 1 57 0 6590 151 34 22 chr6 32659363 32660056 -149755186 - L1MA8 LINE L1 -291 6000 5317 2110 148 0 0 chr6 32660056 32660366 -149754876 - AluSx SINE Alu -2 310 1 6590 151 34 22 chr6 32660366 32661659 -149753583 - L1MA8 LINE L1 -974 5317 3990 257 180 115 0 chr6 32661767 32661828 -149753414 + MER109 Unknown Unknown 895 962 -1470 * 2466 180 80 0 chr6 32661802 32662313 -149752929 + MER109 Unknown Unknown 1603 2154 -278 24 32 0 0 chr6 32662365 32662396 -149752846 + AT_rich Low_complexity Low_complexity 1 31 0 1723 169 3 10 chr6 32662594 32662890 -149752352 - AluJb SINE Alu -18 294 1 23 33 0 0 chr6 32663068 32663098 -149752144 + AT_rich Low_complexity Low_complexity 1 30 0 5890 119 25 0 chr6 32663270 32664265 -149750977 - L1PA15 LINE L1 -2 6163 5158 2203 73 10 30 chr6 32665269 32665572 -149749670 - AluY SINE Alu -14 297 1 2357 82 0 0 chr6 32667064 32667356 -149747886 + AluSx SINE Alu 1 292 -20 668 293 68 26 chr6 32668848 32669159 -149746083 + Charlie2 DNA MER1_type 1 324 -2458 271 214 0 29 chr6 32671259 32671362 -149743880 + GA-rich Low_complexity Low_complexity 3 102 0 180 347 0 42 chr6 32671562 32671657 -149743585 + MIR3 SINE MIR 86 176 -32 2173 133 91 12 chr6 32671768 32672188 -149743054 + L1MA7 LINE L1 5838 6290 -1 399 369 127 15 chr6 32672212 32672551 -149742691 + L2 LINE L2 2381 2757 -557 1054 182 8 68 chr6 32672551 32672815 -149742427 + L1MA10 LINE L1 6085 6332 -2 1160 146 0 6 chr6 32672836 32673014 -149742228 + AluJo SINE Alu 120 296 -16 829 257 51 24 chr6 32675125 32675378 -149739864 + MIR SINE MIR 1 260 -2 230 141 14 42 chr6 32675495 32675566 -149739676 + (TA)n Simple_repeat Simple_repeat 2 70 0 616 322 132 52 chr6 32676311 32676807 -149738435 + L2 LINE L2 2155 2610 -703 2161 76 0 50 chr6 32676807 32677124 -149738118 + AluSx SINE Alu 1 301 -11 616 322 132 52 chr6 32677124 32677581 -149737661 + L2 LINE L2 2610 3226 -87 252 212 30 30 chr6 32677648 32677714 -149737528 - L2 LINE L2 -69 3244 3179 187 274 20 0 chr6 32677976 32678027 -149737215 + L2 LINE L2 3211 3262 -10 704 206 36 36 chr6 32678247 32678412 -149736830 - FRAM SINE Alu -1 175 11 6073 208 3 13 chr6 32678613 32679102 -149736140 + L1PA16 LINE L1 3885 4377 -1789 369 0 0 0 chr6 32679102 32679143 -149736099 + (CA)n Simple_repeat Simple_repeat 2 42 0 6073 208 3 13 chr6 32679143 32680912 -149734330 + L1PA16 LINE L1 4377 6163 -3 2434 167 22 18 chr6 32680993 32682004 -149733238 - L1MA9 LINE L1 -6 6306 5230 2674 208 26 12 chr6 32682004 32682649 -149732593 - L1MA9 LINE L1 -1176 4970 4317 671 12 0 0 chr6 32682649 32682731 -149732511 + L1PA2 LINE L1 6074 6155 0 5131 153 60 21 chr6 32682738 32684628 -149730614 - L1MA8 LINE L1 -3 6288 4336 22256 93 21 14 chr6 32684654 32688737 -149726505 - L1PA8 LINE L1 -21 6151 2040 1381 170 66 111 chr6 32688742 32689184 -149726058 - L1MA8 LINE L1 -1812 4334 3913 1534 184 23 30 chr6 32689216 32689515 -149725727 - AluJo SINE Alu -13 299 3 21 0 0 0 chr6 32690944 32690965 -149724277 + AT_rich Low_complexity Low_complexity 1 21 0 687 196 88 14 chr6 32691142 32691290 -149723952 - MLT1A1 LTR MaLR -51 314 156 10951 30 3 0 chr6 32691613 32692290 -149722952 - L1PA4 LINE L1 0 6155 5482 2511 7 80 0 chr6 32692290 32692578 -149722664 - AluY SINE Alu 0 311 1 10951 30 3 0 chr6 32692578 32693989 -149721253 - L1PA4 LINE L1 -673 5482 4077 345 265 31 0 chr6 32694146 32694244 -149720998 - MER58 DNA MER1_type 0 2420 2320 36 62 0 0 chr6 32694244 32694308 -149720934 + AT_rich Low_complexity Low_complexity 1 64 0 617 253 0 18 chr6 32694345 32694511 -149720731 + L1MC/D LINE L1 5465 5627 -2368 6238 132 10 18 chr6 32694516 32694907 -149720335 + L1PB1 LINE L1 4613 5006 -1145 2357 91 0 0 chr6 32694907 32695204 -149720038 + AluY SINE Alu 1 297 -14 6238 132 10 18 chr6 32695204 32696003 -149719239 + L1PB1 LINE L1 5006 5787 -364 216 0 0 0 chr6 32696003 32696027 -149719215 + (TA)n Simple_repeat Simple_repeat 1 24 0 6238 132 10 18 chr6 32696027 32696389 -149718853 + L1PB1 LINE L1 5787 6150 -1 213 273 61 40 chr6 32696519 32696618 -149718624 - L2 LINE L2 0 3313 3213 297 274 24 0 chr6 32699445 32699529 -149715713 - MER112 DNA MER1_type -174 86 1 339 137 0 0 chr6 32700071 32700122 -149715120 - MER66A LTR ERV1 -141 337 287 2130 101 41 9 chr6 32703356 32703694 -149711548 - L1PA10 LINE L1 0 6168 5820 396 95 16 0 chr6 32704502 32704565 -149710677 - L1MA9 LINE L1 -22 6290 6227 22 0 0 0 chr6 32704678 32704700 -149710542 + AT_rich Low_complexity Low_complexity 1 22 0 2111 77 17 0 chr6 32704825 32705112 -149710130 + L1PA7 LINE L1 5860 6151 -3 697 254 235 16 chr6 32705126 32705449 -149709793 + L1MC4 LINE L1 7037 7430 -612 426 273 80 17 chr6 32705460 32705772 -149709470 + L1MC4 LINE L1 7691 8010 -32 580 310 137 35 chr6 32705868 32706210 -149709032 + L2 LINE L2 2921 3297 -16 27 0 0 0 chr6 32706447 32706474 -149708768 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr6 32706541 32706601 -149708641 + AT_rich Low_complexity Low_complexity 1 60 0 266 248 56 48 chr6 32706746 32706871 -149708371 - L1ME4a LINE L1 -50 6071 5946 26 0 0 0 chr6 32706945 32706971 -149708271 + AT_rich Low_complexity Low_complexity 1 26 0 563 319 60 4 chr6 32706983 32707218 -149708024 - MLT1I LTR MaLR -24 385 138 613 192 17 23 chr6 32707429 32707606 -149707636 + CT-rich Low_complexity Low_complexity 3 178 0 1486 191 37 13 chr6 32707607 32707972 -149707270 - AluJb SINE Alu 0 373 2 2238 152 22 12 chr6 32707994 32708395 -149706847 - L1PA15 LINE L1 -4 6161 5757 2553 229 11 25 chr6 32708395 32708967 -149706275 - L1PA13 LINE L1 -6223 564 1 634 308 55 13 chr6 32709064 32709301 -149705941 - MLT1I LTR MaLR -153 256 10 576 286 95 87 chr6 32709311 32709731 -149705511 + L1ME4a LINE L1 5381 5807 -314 2657 43 0 0 chr6 32709731 32710036 -149705206 - AluY SINE Alu -6 305 1 576 286 95 87 chr6 32710036 32710122 -149705120 + L1ME4a LINE L1 5807 5891 -230 349 82 36 36 chr6 32710488 32710598 -149704644 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 24 0 0 0 chr6 32710628 32710652 -149704590 + AT_rich Low_complexity Low_complexity 1 24 0 2129 133 0 3 chr6 32711197 32711499 -149703743 + AluSq SINE Alu 1 301 -12 2182 112 3 10 chr6 32711897 32712211 -149703031 - AluSx SINE Alu 0 312 1 701 154 0 0 chr6 32714692 32714815 -149700427 + L1MA8 LINE L1 6158 6280 -11 373 298 23 69 chr6 32714913 32715131 -149700111 + L1MC/D LINE L1 5264 5471 -2337 299 291 183 56 chr6 32715144 32715357 -149699885 + MIR SINE MIR 12 251 -11 1877 92 64 21 chr6 32717061 32717344 -149697898 + AluSq SINE Alu 1 295 -18 5010 78 19 0 chr6 32717739 32718410 -149696832 - L1PA8 LINE L1 -13 6159 5476 26 50 0 0 chr6 32718682 32718722 -149696520 + AT_rich Low_complexity Low_complexity 1 40 0 3030 48 13 0 chr6 32718722 32719096 -149696146 - L1PA8 LINE L1 -8 6164 5786 948 255 63 20 chr6 32719296 32719598 -149695644 - L2 LINE L2 -2 3311 2997 521 91 13 13 chr6 32719843 32719920 -149695322 - MSTB1 LTR MaLR -8 424 348 229 26 53 0 chr6 32719939 32719977 -149695265 + (TA)n Simple_repeat Simple_repeat 2 41 0 5132 206 48 6 chr6 32720493 32721775 -149693467 + L1MA7 LINE L1 2202 3536 -2610 4026 185 31 17 chr6 32721780 32722919 -149692323 + L1MA7 LINE L1 4521 5679 -612 4569 178 53 13 chr6 32722921 32723790 -149691452 + MER54A LTR ERVL 7 901 0 1670 150 11 83 chr6 32723790 32724164 -149691078 + L1MA7 LINE L1 5680 6026 -265 949 167 11 0 chr6 32725004 32725184 -149690058 + L1MA7 LINE L1 6105 6286 -5 31 58 0 0 chr6 32726655 32726707 -149688535 + AT_rich Low_complexity Low_complexity 1 52 0 245 159 0 0 chr6 32728801 32728845 -149686397 + U5 snRNA snRNA 1 44 -72 3196 139 65 58 chr6 32729064 32729423 -149685819 - L1MA9 LINE L1 0 6312 5957 2042 118 3 0 chr6 32729423 32729710 -149685532 - AluSx SINE Alu -15 297 10 3196 139 65 58 chr6 32729710 32729874 -149685368 - L1MA9 LINE L1 -355 5957 5796 213 39 0 0 chr6 32729874 32729900 -149685342 + (TG)n Simple_repeat Simple_repeat 1 26 0 3196 139 65 58 chr6 32729900 32730067 -149685175 - L1MA9 LINE L1 -516 5796 5616 298 189 0 40 chr6 32730189 32730263 -149684979 - L1ME2 LINE L1 -1 6163 6093 406 292 17 8 chr6 32730472 32730592 -149684650 - MIR SINE MIR -95 167 47 2477 238 56 27 chr6 32730615 32731478 -149683764 - L1ME1 LINE L1 -54 6112 5225 836 250 23 11 chr6 32731520 32731784 -149683458 - L1ME1 LINE L1 -1502 4644 4378 2614 84 13 5 chr6 32731816 32732197 -149683045 - L1PA6 LINE L1 0 6154 5771 32 43 0 0 chr6 32732724 32732770 -149682472 + AT_rich Low_complexity Low_complexity 1 46 0 26 30 0 0 chr6 32732949 32732982 -149682260 + AT_rich Low_complexity Low_complexity 1 33 0 390 85 0 0 chr6 32734498 32734557 -149680685 - L1MA2 LINE L1 0 6304 6246 837 160 0 0 chr6 32734572 32734703 -149680539 - FLAM_C SINE Alu -12 131 1 701 74 0 1 chr6 32734710 32734810 -149680432 - L1MA3 LINE L1 -56 6249 6137 32 26 0 0 chr6 32736717 32736756 -149678486 + AT_rich Low_complexity Low_complexity 1 39 0 2404 246 119 40 chr6 32736761 32736885 -149678357 - L1MC4 LINE L1 0 8042 7929 560 40 13 0 chr6 32736885 32736960 -149678282 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2404 246 119 40 chr6 32736960 32737896 -149677346 - L1MC4 LINE L1 -113 7929 6899 22 0 0 0 chr6 32740122 32740144 -149675098 + AT_rich Low_complexity Low_complexity 1 22 0 2908 164 57 26 chr6 32740504 32741187 -149674055 - L1MA9 LINE L1 -5 6307 5604 454 43 29 0 chr6 32741187 32741256 -149673986 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 6709 13 0 0 chr6 32741256 32742013 -149673229 - L1PA2 LINE L1 -11 6144 5388 1942 143 3 0 chr6 32742033 32742319 -149672923 - AluSx SINE Alu -24 288 2 841 165 0 45 chr6 32742321 32742497 -149672745 - L1MA9 LINE L1 -684 5607 5440 504 203 322 37 chr6 32742494 32742736 -149672506 - L1M3e LINE L1 -5729 1301 991 * 230 176 0 0 chr6 32742721 32742755 -149672487 - L1M3e LINE L1 -6993 37 4 * 330 228 13 87 chr6 32743771 32743920 -149671322 - L1MC4 LINE L1 -21 8021 7884 461 203 47 8 chr6 32743972 32744100 -149671142 - L1MC4 LINE L1 -372 7670 7538 364 329 94 68 chr6 32744113 32744504 -149670738 - MLT1K LTR MaLR -48 540 136 1172 274 59 16 chr6 32744504 32744927 -149670315 - LTR47B LTR ERVL -2 441 1 364 329 94 68 chr6 32744927 32744961 -149670281 - MLT1K LTR MaLR -452 136 104 320 291 25 0 chr6 32745048 32745127 -149670115 - MIR SINE MIR -176 86 6 345 176 0 0 chr6 32745578 32745646 -149669596 - L1MC4 LINE L1 -847 7195 7128 1612 231 154 16 chr6 32745648 32746090 -149669152 + MLT1D LTR MaLR 1 503 -2 494 259 84 27 chr6 32746091 32746130 -149669112 - L1MC4 LINE L1 -911 7131 7096 192 77 0 0 chr6 32746130 32746156 -149669086 + (TG)n Simple_repeat Simple_repeat 1 26 0 494 259 84 27 chr6 32746156 32746325 -149668917 - L1MC4 LINE L1 -946 7096 6903 1836 70 62 4 chr6 32746325 32746566 -149668676 + AluY SINE Alu 44 298 -13 494 259 84 27 chr6 32746566 32746618 -149668624 - L1MC4 LINE L1 -1139 6903 6855 261 89 0 0 chr6 32746930 32746975 -149668267 + L1 LINE L1 3734 3778 -2368 840 210 10 29 chr6 32747004 32747274 -149667968 - MLT1D LTR MaLR -172 333 29 7643 190 18 8 chr6 32747320 32749689 -149665553 + L1PA15 LINE L1 3777 6159 -6 2090 99 7 14 chr6 32750545 32750839 -149664403 + AluSq SINE Alu 6 297 -16 4035 160 53 17 chr6 32750975 32751751 -149663491 - L1PB4 LINE L1 -7 6149 5346 2212 89 0 0 chr6 32751778 32752058 -149663184 + AluY SINE Alu 1 280 -31 261 0 0 0 chr6 32752061 32752090 -149663152 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2127 128 3 0 chr6 32752545 32752843 -149662399 - AluSx SINE Alu -13 299 1 361 270 18 0 chr6 32753297 32753408 -149661834 - MER58 DNA MER1_type -15 2405 2293 4502 235 102 91 chr6 32753419 32755049 -149660193 + L1MC3 LINE L1 5468 7079 -706 300 280 21 21 chr6 32755049 32755142 -149660100 + MLT1F1 LTR MaLR 33 125 -442 4502 235 102 91 chr6 32755142 32755320 -149659922 + L1MC3 LINE L1 7079 7254 -531 8883 177 23 28 chr6 32755320 32757084 -149658158 + MER52A LTR ERV1 1 1755 0 4502 235 102 91 chr6 32757084 32757458 -149657784 + L1MC3 LINE L1 7254 7768 -17 428 315 127 17 chr6 32757495 32757803 -149657439 + L1M2 LINE L1 12 392 -6446 1827 154 36 11 chr6 32758202 32758560 -149656682 + L1MA6 LINE L1 5934 6300 0 21 0 0 0 chr6 32758976 32758997 -149656245 + AT_rich Low_complexity Low_complexity 1 21 0 2006 154 0 3 chr6 32760080 32760385 -149654857 - AluSx SINE Alu -8 304 1 358 331 127 0 chr6 32761053 32761234 -149654008 + MIR SINE MIR 53 256 -6 2630 58 0 0 chr6 32761445 32761772 -149653470 - L1PA6 LINE L1 -8 6146 5820 33 0 0 0 chr6 32763348 32763381 -149651861 + AT_rich Low_complexity Low_complexity 1 33 0 192 343 40 10 chr6 32765057 32765156 -149650086 + MIR SINE MIR 88 189 -73 282 386 9 0 chr6 32765176 32765290 -149649952 - MER5A DNA MER1_type -3 186 72 6772 138 47 9 chr6 32766768 32767954 -149647288 - Tigger3b DNA MER2_type 0 1231 1 24 0 0 0 chr6 32768176 32768200 -149647042 + AT_rich Low_complexity Low_complexity 1 24 0 5171 120 11 8 chr6 32768528 32769312 -149645930 - MER41-int LTR ERV1 -851 5095 4309 4945 115 23 4 chr6 32769317 32770049 -149645193 + MER41B-int LTR ERV1 5199 5944 -2 2845 105 117 36 chr6 32770049 32770555 -149644687 + MER41B LTR ERV1 1 547 -88 912 140 7 0 chr6 32772034 32772170 -149643072 - AluSg/x SINE Alu -20 292 156 843 253 89 104 chr6 32772269 32772786 -149642456 + LTR33 LTR ERVL 1 509 -12 298 327 27 0 chr6 32772825 32772935 -149642307 + L2 LINE L2 2921 3033 -280 220 194 0 0 chr6 32773129 32773165 -149642077 + (CA)n Simple_repeat Simple_repeat 2 37 0 2500 251 21 14 chr6 32773232 32774040 -149641202 - L1M4 LINE L1 -3157 3487 2674 4037 185 25 15 chr6 32774040 32774893 -149640349 - L1MC2 LINE L1 -8 6336 5476 1405 223 40 38 chr6 32774894 32775366 -149639876 - L1M4 LINE L1 -5029 1513 1041 5884 99 30 2 chr6 32775377 32776233 -149639009 - L1PA13 LINE L1 0 6163 5284 2500 255 11 54 chr6 32776233 32776979 -149638263 - L1M4 LINE L1 -5487 1055 342 21 0 0 0 chr6 32777153 32777174 -149638068 + AT_rich Low_complexity Low_complexity 1 21 0 2370 178 32 36 chr6 32777174 32777736 -149637506 - L1MA4 LINE L1 -8 6292 5733 205 200 0 0 chr6 32777764 32777804 -149637438 + T-rich Low_complexity Low_complexity 1 40 0 340 20 0 39 chr6 32777805 32777856 -149637386 - L1PA6 LINE L1 0 6154 6106 694 160 0 8 chr6 32777856 32777981 -149637261 - L1PA15 LINE L1 -19 6146 6023 * 4899 154 12 6 chr6 32777978 32779215 -149636027 - L1PA15 LINE L1 0 7584 6319 677 198 32 11 chr6 32779228 32779415 -149635827 - L1PA15 LINE L1 -3913 3652 3462 201 229 0 0 chr6 32779419 32779467 -149635775 + C-rich Low_complexity Low_complexity 4 51 0 990 209 69 28 chr6 32779467 32779831 -149635411 - L1PA15 LINE L1 -4068 3497 3119 341 191 0 0 chr6 32779872 32779935 -149635307 - L1PA15 LINE L1 -4553 3012 2950 266 175 52 21 chr6 32780024 32780121 -149635121 + (TA)n Simple_repeat Simple_repeat 1 100 0 1465 288 51 14 chr6 32780238 32780822 -149634420 + L1ME2 LINE L1 5529 6134 -30 6845 67 2 2 chr6 32781091 32782311 -149632931 - L1PA6 LINE L1 -8 6146 4917 2684 65 0 6 chr6 32782311 32782667 -149632575 + L1P LINE L1 3345 3698 -2448 848 133 20 0 chr6 32782662 32782813 -149632429 - L1P3 LINE L1 -2810 3651 3498 * 4573 204 54 15 chr6 32782811 32784022 -149631220 - L1MEc LINE L1 -2688 3458 2225 3249 122 33 19 chr6 32785126 32785754 -149629488 + L1P4 LINE L1 5148 5781 -385 2673 140 108 14 chr6 32785776 32786362 -149628880 - MER109 Unknown Unknown -60 2372 1732 9838 145 24 19 chr6 32786362 32788520 -149626722 - L1P3 LINE L1 -4276 2185 11 12513 162 55 52 chr6 32788537 32789415 -149625827 + MER109 Unknown Unknown 1 875 -1557 2145 31 4 0 chr6 32789415 32789673 -149625569 - L1PA2 LINE L1 0 6155 5897 12513 162 55 52 chr6 32789673 32792227 -149623015 + MER109 Unknown Unknown 875 2365 -67 2338 110 28 5 chr6 32792256 32792646 -149622596 - L1P4 LINE L1 -385 5781 5383 * 3420 190 42 18 chr6 32792642 32793581 -149621661 + L1MA7 LINE L1 2575 3535 -2611 * 3842 181 42 18 chr6 32793578 32794720 -149620522 + L1MA7 LINE L1 4520 5682 -609 1569 114 14 14 chr6 32794720 32794940 -149620302 + AluSg/x SINE Alu 77 296 -16 4242 177 51 15 chr6 32794947 32795811 -149619431 + MER54A LTR ERVL 7 901 0 1566 127 3 108 chr6 32795811 32796173 -149619069 + L1MA7 LINE L1 5680 6003 -288 723 101 63 38 chr6 32796180 32796338 -149618904 + L1MA7 LINE L1 6130 6291 0 985 130 11 0 chr6 32797209 32797386 -149617856 + L1MA7 LINE L1 6109 6287 -4 2170 99 0 17 chr6 32798119 32798412 -149616830 - AluSx SINE Alu -24 288 1 243 143 0 0 chr6 32801492 32801534 -149613708 + U5 snRNA snRNA 3 44 -72 1273 107 0 6 chr6 32801548 32801716 -149613526 + AluYb8 SINE Alu 1 167 -151 26 30 0 0 chr6 32802028 32802061 -149613181 + AT_rich Low_complexity Low_complexity 1 33 0 343 261 120 11 chr6 32802080 32802203 -149613039 - L1MC4 LINE L1 0 8042 7891 675 30 20 10 chr6 32802203 32802302 -149612940 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 343 261 120 11 chr6 32802302 32802362 -149612880 - L1MC4 LINE L1 -151 7891 7839 25034 38 5 1 chr6 32802668 32806668 -149608574 - L1PA4 LINE L1 -8 6147 2131 1713 257 72 14 chr6 32806667 32807518 -149607724 - L1MC4 LINE L1 -86 7722 6814 * 200 234 21 0 chr6 32808550 32808597 -149606645 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 2913 173 30 15 chr6 32810130 32810785 -149604457 - L1MA8 LINE L1 -21 6270 5606 1405 122 0 0 chr6 32810785 32810797 -149604445 - AluSx SINE Alu -13 297 286 207 0 0 0 chr6 32810797 32810820 -149604422 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1405 122 0 0 chr6 32810820 32811003 -149604239 - AluSx SINE Alu -23 287 102 387 0 0 0 chr6 32811004 32811047 -149604195 + (TG)n Simple_repeat Simple_repeat 2 44 0 6921 73 0 0 chr6 32811124 32812417 -149602825 - L1PA8 LINE L1 -2 6170 4875 953 101 0 0 chr6 32812420 32812539 -149602703 - AluSx SINE Alu -194 119 1 660 168 18 48 chr6 32812539 32812706 -149602536 - L1MA8 LINE L1 -692 5608 5447 436 251 42 74 chr6 32812718 32812933 -149602309 - L1M3e LINE L1 -5730 1300 1093 3447 112 8 6 chr6 32813102 32813612 -149601630 + MER9 LTR ERVK 1 511 0 1115 250 17 23 chr6 32814132 32814480 -149600762 - L1MC4 LINE L1 -569 7473 7128 6828 66 14 1 chr6 32814577 32816183 -149599059 - L1PA7 LINE L1 -6 6148 4533 5313 160 2 10 chr6 32816183 32817175 -149598067 - L1P LINE L1 -4108 2038 1055 1011 232 154 44 chr6 32817178 32817561 -149597681 + MLT1D LTR MaLR 79 503 -2 511 245 98 53 chr6 32817562 32817602 -149597640 - L1MC4 LINE L1 -911 7131 7094 345 47 0 0 chr6 32817602 32817645 -149597597 + (TG)n Simple_repeat Simple_repeat 2 44 0 511 245 98 53 chr6 32817645 32817869 -149597373 - L1MC4 LINE L1 -948 7094 6855 256 89 0 0 chr6 32818181 32818226 -149597016 + L1 LINE L1 3734 3778 -2368 1132 199 133 7 chr6 32818255 32818526 -149596716 - MLT1D LTR MaLR -172 333 29 7363 187 18 8 chr6 32818572 32820954 -149594288 + L1PA15 LINE L1 3777 6159 -6 2124 109 7 10 chr6 32821805 32822099 -149593143 + AluSq SINE Alu 1 293 -20 4039 165 29 8 chr6 32822232 32823019 -149592223 - L1PB4 LINE L1 -7 6149 5346 180 0 0 0 chr6 32823181 32823201 -149592041 + (A)n Simple_repeat Simple_repeat 1 20 0 2129 134 0 0 chr6 32823492 32823791 -149591451 - AluSx SINE Alu -13 299 1 4599 48 5 9 chr6 32823905 32824482 -149590760 - L1PA6 LINE L1 -7 6147 5573 384 247 33 13 chr6 32824829 32824979 -149590263 - MER58 DNA MER1_type -15 2405 2253 3786 253 32 59 chr6 32824980 32826596 -149588646 + L1MC3 LINE L1 5497 7068 -717 319 247 21 21 chr6 32826607 32826700 -149588542 + MLT1F1 LTR MaLR 33 125 -442 691 206 14 0 chr6 32826737 32826878 -149588364 + L1MD3 LINE L1 7443 7585 -410 6828 182 56 34 chr6 32826878 32828414 -149586828 + MER52A LTR ERV1 1 1570 -185 1080 230 4 0 chr6 32828447 32828704 -149586538 - L1P LINE L1 -2208 3938 3681 795 353 22 18 chr6 32828940 32829441 -149585801 - L1PA13 LINE L1 -6201 586 84 567 42 0 0 chr6 32829442 32829514 -149585728 - L1P LINE L1 -1832 4314 4243 1348 221 61 0 chr6 32829641 32830017 -149585225 - L1MD3 LINE L1 -15 7980 7582 685 190 73 0 chr6 32830017 32830154 -149585088 - MER52A LTR ERV1 0 1755 1609 269 56 0 0 chr6 32830203 32830239 -149585003 + L1P4 LINE L1 5541 5576 -585 * 4308 74 16 6 chr6 32830225 32831182 -149584060 - L1P3 LINE L1 -432 5722 4762 277 297 0 69 chr6 32831205 32831306 -149583936 + MIR SINE MIR 169 262 0 479 121 0 0 chr6 32832759 32832842 -149582400 - L1MB8 LINE L1 -3 6175 6093 1307 180 51 0 chr6 32832860 32833154 -149582088 - L1MB4 LINE L1 -6 6174 5866 24 32 0 0 chr6 32833599 32833630 -149581612 + AT_rich Low_complexity Low_complexity 1 31 0 1766 166 0 3 chr6 32833670 32833982 -149581260 - AluJb SINE Alu 0 311 1 2067 118 10 16 chr6 32834018 32834332 -149580910 - AluSp SINE Alu -1 312 1 22 56 0 0 chr6 32834435 32834471 -149580771 + AT_rich Low_complexity Low_complexity 1 36 0 1761 181 3 23 chr6 32834628 32834927 -149580315 + AluJb SINE Alu 1 293 -19 198 167 0 0 chr6 32835068 32835104 -149580138 + (TA)n Simple_repeat Simple_repeat 2 37 0 1671 330 34 10 chr6 32835200 32835914 -149579328 + HERV16 LTR ERVL 2312 3042 -1954 841 354 35 36 chr6 32836024 32836956 -149578286 + HERV16 LTR ERVL 3279 4209 -1555 354 328 71 16 chr6 32837439 32837622 -149577620 + HERV16 LTR ERVL 4746 4938 -826 1303 43 6 0 chr6 32837947 32838109 -149577133 - L1PA5 LINE L1 -9 6145 5983 902 323 18 46 chr6 32838164 32838598 -149576644 + LTR16A LTR ERVL 18 439 -11 293 110 77 0 chr6 32838616 32838707 -149576535 + (TA)n Simple_repeat Simple_repeat 1 98 0 423 290 27 71 chr6 32840495 32840719 -149574523 - MIR SINE MIR 0 262 49 319 348 11 11 chr6 32840731 32840909 -149574333 + GA-rich Low_complexity Low_complexity 2 179 0 22 0 0 0 chr6 32841034 32841056 -149574186 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr6 32842455 32842478 -149572764 + AT_rich Low_complexity Low_complexity 1 23 0 1101 186 34 17 chr6 32843103 32843340 -149571902 - MER21-int LTR ERV1 -224 3967 3727 7126 110 19 8 chr6 32843345 32844443 -149570799 + THE1C-int LTR MaLR 471 1580 0 2501 120 13 11 chr6 32844443 32844817 -149570425 + THE1C LTR MaLR 1 375 0 1271 236 10 3 chr6 32844817 32845114 -149570128 - MER21-int LTR ERV1 -3706 485 187 2154 123 0 0 chr6 32845278 32845570 -149569672 - AluSg SINE Alu -18 292 1 4333 89 17 0 chr6 32845590 32846188 -149569054 - L1PA10 LINE L1 -5 6163 5556 994 100 0 9 chr6 32846188 32846417 -149568825 + L1PA10 LINE L1 5199 5546 -622 226 310 0 0 chr6 32847147 32847218 -149568024 + CT-rich Low_complexity Low_complexity 1 71 0 5001 32 2 5 chr6 32847850 32848451 -149566791 + L1PA4 LINE L1 5557 6155 0 30 27 0 0 chr6 32848470 32848507 -149566735 + AT_rich Low_complexity Low_complexity 1 37 0 346 163 12 12 chr6 32849303 32849383 -149565859 + CT-rich Low_complexity Low_complexity 4 83 0 21 0 0 0 chr6 32851174 32851195 -149564047 + AT_rich Low_complexity Low_complexity 1 21 0 895 122 8 0 chr6 32851196 32851319 -149563923 - FLAM_C SINE Alu -19 124 1 1938 267 51 30 chr6 32851930 32852652 -149562590 + L2 LINE L2 1271 2007 -1307 22 0 0 0 chr6 32853954 32853976 -149561266 + AT_rich Low_complexity Low_complexity 1 22 0 1107 216 0 14 chr6 32854287 32854509 -149560733 + MER20 DNA MER1_type 1 219 0 206 103 0 26 chr6 32854980 32855019 -149560223 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 187 386 101 16 chr6 32858870 32859176 -149556066 + L2 LINE L2 1164 1495 -1819 250 263 119 34 chr6 32859412 32859530 -149555712 - Charlie8 DNA MER1_type -2177 240 113 885 28 0 0 chr6 32859556 32859662 -149555580 + L1PA2 LINE L1 6050 6155 0 1315 272 47 17 chr6 32859854 32860446 -149554796 - L1ME3A LINE L1 -232 5938 5329 427 284 72 28 chr6 32860708 32861071 -149554171 + L1M4 LINE L1 3868 4246 -1900 361 241 80 70 chr6 32861081 32861268 -149553974 + L1M4 LINE L1 4519 4707 -1439 2324 219 36 11 chr6 32861269 32861821 -149553421 - MER4D LTR ERV1 0 903 338 * 2863 107 8 30 chr6 32861819 32862049 -149553193 + MER4D LTR ERV1 133 349 -554 2816 159 39 76 chr6 32862049 32862684 -149552558 - LTR9 LTR ERV1 0 612 1 2863 107 8 30 chr6 32862684 32862922 -149552320 + MER4D LTR ERV1 349 591 -312 2458 141 59 15 chr6 32862922 32863383 -149551859 - L1PA14 LINE L1 0 6161 5681 1384 162 0 5 chr6 32863392 32863614 -149551628 - AluJb SINE Alu -14 298 78 2984 84 0 14 chr6 32863652 32864092 -149551150 - L1PA14 LINE L1 -474 5687 5254 * 3219 202 20 27 chr6 32864089 32864896 -149550346 - L1PA14 LINE L1 -1214 4932 4132 380 142 0 52 chr6 32864906 32865040 -149550202 + (TA)n Simple_repeat Simple_repeat 2 128 0 28664 113 9 11 chr6 32865044 32870605 -149544637 - L1PA7 LINE L1 -9 6145 600 231 196 18 0 chr6 32870795 32870851 -149544391 - L1MA5 LINE L1 -10 6290 6234 435 95 14 0 chr6 32870859 32870933 -149544309 + L1MA4 LINE L1 6102 6176 -124 1065 238 39 10 chr6 32871220 32871527 -149543715 + L1P4 LINE L1 3310 3625 -2521 2443 128 41 16 chr6 32871528 32871967 -149543275 - LTR7 LTR ERV1 0 450 1 4396 115 7 15 chr6 32871967 32872691 -149542551 - HERVH LTR ERV1 0 7713 6996 * 14579 196 14 20 chr6 32872685 32877825 -149537417 - HERVH LTR ERV1 -1878 5835 791 891 202 30 53 chr6 32877880 32878418 -149536824 - HERVH LTR ERV1 -7254 459 1 2210 145 45 27 chr6 32878418 32878860 -149536382 - LTR7 LTR ERV1 0 450 1 4392 195 12 19 chr6 32878860 32879833 -149535409 + L1P4 LINE L1 3622 4588 -1558 467 133 89 0 chr6 32879843 32879933 -149535309 + MER4A LTR ERV1 1 98 -566 1621 139 11 72 chr6 32879933 32880301 -149534941 + MER4A LTR ERV1 261 664 0 2549 205 12 49 chr6 32880305 32880441 -149534801 + L1P4 LINE L1 4599 4738 -1408 279 0 0 0 chr6 32880441 32880472 -149534770 + (CA)n Simple_repeat Simple_repeat 2 32 0 2549 205 12 49 chr6 32880472 32881066 -149534176 + L1P4 LINE L1 4738 5302 -844 1705 119 15 0 chr6 32881058 32881327 -149533915 + L1P4 LINE L1 5510 5782 -384 * 2193 100 10 0 chr6 32881328 32881619 -149533623 + AluSc SINE Alu 1 294 -15 5783 220 99 24 chr6 32881625 32883659 -149531583 - L1M4c LINE L1 -4734 2225 43 391 310 150 42 chr6 32883936 32884388 -149530854 + L1MC/D LINE L1 5298 5798 -2010 24 96 0 0 chr6 32884586 32884659 -149530583 + AT_rich Low_complexity Low_complexity 1 73 0 322 279 29 22 chr6 32886109 32886245 -149528997 - ERVL LTR ERVL -3948 1816 1680 1975 170 23 0 chr6 32886245 32886592 -149528650 - MLT1A1 LTR MaLR 0 365 11 451 181 181 6 chr6 32887317 32887477 -149527765 - L1ME LINE L1 -717 5445 5258 361 313 38 8 chr6 32887527 32887658 -149527584 - L1 LINE L1 -2385 3761 3627 44 75 0 0 chr6 32888002 32888095 -149527147 + AT_rich Low_complexity Low_complexity 1 93 0 2102 78 58 0 chr6 32888365 32888659 -149526583 - AluY SINE Alu 0 311 1 1907 147 54 78 chr6 32889050 32889548 -149525694 + LTR19A LTR ERV1 1 486 0 1630 156 99 6 chr6 32890741 32891055 -149524187 + MER61A LTR ERV1 1 343 0 2093 97 17 13 chr6 32891095 32891393 -149523849 - THE1B LTR MaLR -65 299 1 603 257 109 43 chr6 32891395 32891631 -149523611 + L1MB7 LINE L1 4801 5020 -1164 1009 156 83 5 chr6 32891631 32891836 -149523406 - MER58A DNA MER1_type -3 221 1 603 257 109 43 chr6 32891836 32892650 -149522592 + L1MB7 LINE L1 5020 5907 -277 21 0 0 0 chr6 32892650 32892671 -149522571 + AT_rich Low_complexity Low_complexity 1 21 0 300 256 154 26 chr6 32892886 32893003 -149522239 - HAL1 LINE L1 -1168 1339 1208 40 0 0 0 chr6 32894370 32894410 -149520832 + AT_rich Low_complexity Low_complexity 1 40 0 704 258 91 62 chr6 32895541 32896088 -149519154 - L1MCa LINE L1 -5030 1396 834 1105 106 12 0 chr6 32896102 32896263 -149518979 - AluSg/x SINE Alu 0 310 148 1808 174 16 47 chr6 32896332 32896718 -149518524 - MLT1A2 LTR MaLR 0 374 1 1799 247 39 10 chr6 32896718 32897127 -149518115 - MLT1A2-int LTR MaLR 0 1735 1315 344 229 0 14 chr6 32897296 32897366 -149517876 - MLT1A2-int LTR MaLR -992 743 675 349 215 0 0 chr6 32897427 32897492 -149517750 - MLT1A2-int LTR MaLR -488 883 819 2171 231 65 42 chr6 32897497 32898133 -149517109 - MLT1A2-int LTR MaLR -1081 654 5 1476 194 79 25 chr6 32898137 32898492 -149516750 - MLT1A2 LTR MaLR 0 374 1 43962 43 1 0 chr6 32899505 32905653 -149509589 + L1PA4 LINE L1 3 6152 -3 24 67 0 0 chr6 32905765 32905810 -149509432 + AT_rich Low_complexity Low_complexity 1 45 0 241 317 84 14 chr6 32906272 32906414 -149508828 - L1MC/D LINE L1 -301 5820 5684 5584 101 8 2 chr6 32907397 32908231 -149507011 - L1PA7 LINE L1 -2262 3884 3046 10208 94 26 9 chr6 32908231 32910447 -149504795 + L1PA7 LINE L1 3915 6149 -5 24 0 0 0 chr6 32911016 32911040 -149504202 + AT_rich Low_complexity Low_complexity 1 24 0 247 218 39 39 chr6 32911137 32911215 -149504027 + MIR SINE MIR 53 130 -132 995 153 47 6 chr6 32911599 32911769 -149503473 + AluSg/x SINE Alu 131 307 -3 210 169 46 15 chr6 32912352 32912417 -149502825 + CT-rich Low_complexity Low_complexity 4 70 0 311 0 26 0 chr6 32913102 32913141 -149502101 + (TA)n Simple_repeat Simple_repeat 2 41 0 2209 61 7 17 chr6 32913143 32913439 -149501803 - AluY SINE Alu -18 293 1 310 128 8 56 chr6 32914267 32914392 -149500850 + (TA)n Simple_repeat Simple_repeat 2 120 0 180 277 117 109 chr6 32914659 32914796 -149500446 - L2 LINE L2 -556 2758 2621 604 280 20 35 chr6 32915401 32915625 -149499617 - MIR SINE MIR 0 262 42 26 30 0 0 chr6 32919507 32919540 -149495702 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr6 32919905 32919966 -149495276 + AT_rich Low_complexity Low_complexity 1 61 0 212 235 20 0 chr6 32920031 32920082 -149495160 - L2 LINE L2 0 3313 3262 1735 242 114 57 chr6 32920149 32920246 -149494996 + L1MEc LINE L1 299 389 -6007 1910 131 70 25 chr6 32920246 32920605 -149494637 + THE1C LTR MaLR 1 375 0 1735 242 114 57 chr6 32920605 32921264 -149493978 + L1MEc LINE L1 389 1098 -5298 240 163 0 0 chr6 32921265 32921308 -149493934 - MLT2B1 LTR ERVL -102 418 376 2281 209 120 65 chr6 32921476 32922298 -149492944 + MER52A LTR ERV1 151 1018 -737 925 160 155 0 chr6 32922329 32922507 -149492735 + Tigger1 DNA MER2_type 2 207 -2211 3456 56 4 9 chr6 32922507 32922957 -149492285 + LTR7 LTR ERV1 1 448 -2 3183 118 31 4 chr6 32922959 32923444 -149491798 + Tigger1 DNA MER2_type 203 700 -1718 321 226 20 69 chr6 32923445 32923547 -149491695 + L1MEc LINE L1 3140 3236 -2979 981 110 0 0 chr6 32923556 32923692 -149491550 - AluJb SINE Alu -176 136 1 27 29 0 0 chr6 32923992 32924026 -149491216 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr6 32924144 32924197 -149491045 + AT_rich Low_complexity Low_complexity 1 53 0 247 99 56 14 chr6 32924887 32924958 -149490284 + (TA)n Simple_repeat Simple_repeat 1 74 0 27 49 0 0 chr6 32925013 32925054 -149490188 + AT_rich Low_complexity Low_complexity 1 41 0 247 158 0 0 chr6 32925061 32925099 -149490143 + L1MB1 LINE L1 6122 6159 -30 10060 28 6 2 chr6 32925121 32927098 -149488144 + L1PA4 LINE L1 4166 6152 -3 267 368 76 11 chr6 32927101 32927286 -149487956 + L3 LINE CR1 1379 1575 -2 225 371 22 0 chr6 32927890 32927979 -149487263 - L2 LINE L2 -8 3264 3174 2414 87 3 0 chr6 32928242 32928551 -149486691 - AluSx SINE Alu -2 310 1 275 345 58 35 chr6 32929354 32929615 -149485627 - L2 LINE L2 -1217 2097 1831 498 0 27 40 chr6 32929761 32929836 -149485406 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 204 97 0 0 chr6 32929931 32929962 -149485280 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 163 0 0 chr6 32930303 32930352 -149484890 + L1PA15 LINE L1 6101 6149 -16 21 0 0 0 chr6 32931876 32931897 -149483345 + AT_rich Low_complexity Low_complexity 1 21 0 279 330 97 39 chr6 32934144 32934350 -149480892 - MIR SINE MIR -9 253 36 206 132 0 26 chr6 32934404 32934442 -149480800 + (TG)n Simple_repeat Simple_repeat 2 38 0 6225 65 4 13 chr6 32934948 32935772 -149479470 - L1PA7 LINE L1 0 6469 5654 1407 130 5 5 chr6 32935774 32935981 -149479261 + AluSc SINE Alu 1 207 -102 16504 92 6 3 chr6 32935989 32938361 -149476881 - L1PA7 LINE L1 -796 5665 3287 2864 115 0 0 chr6 32938356 32938764 -149476478 - L1PA7 LINE L1 -6053 408 1 * 707 85 0 0 chr6 32938829 32938923 -149476319 + AluY SINE Alu 1 94 -217 2182 241 60 52 chr6 32938925 32939361 -149475881 - L1MC/D LINE L1 -714 5448 5017 1799 130 6 93 chr6 32939361 32939684 -149475558 - AluSx SINE Alu -17 295 1 2182 241 60 52 chr6 32939684 32939990 -149475252 - L1MC/D LINE L1 -1145 5017 4715 2445 49 0 3 chr6 32939990 32940276 -149474966 - AluY SINE Alu -21 290 6 2182 241 60 52 chr6 32940276 32940608 -149474634 - L1MC/D LINE L1 -1447 4715 4409 370 323 85 32 chr6 32940982 32941499 -149473743 - L1ME1 LINE L1 -205 5961 5433 360 246 0 27 chr6 32941506 32941616 -149473626 - L1MC4a LINE L1 -7 7801 7695 769 314 28 8 chr6 32941758 32942010 -149473232 - MIR SINE MIR 0 262 6 1739 207 61 71 chr6 32942117 32942625 -149472617 + MER77 LTR ERV1 1 503 -102 341 169 0 22 chr6 32942897 32942986 -149472256 + GA-rich Low_complexity Low_complexity 3 89 0 598 314 92 42 chr6 32943499 32944600 -149470642 - L1ME1 LINE L1 -746 5400 4226 2531 44 0 3 chr6 32944600 32944898 -149470344 - AluY SINE Alu -14 297 1 598 314 92 42 chr6 32944898 32945060 -149470182 - L1ME1 LINE L1 -1920 4226 4074 252 258 30 0 chr6 32945099 32945165 -149470077 - MLT1G1 LTR MaLR 0 555 488 374 248 56 56 chr6 32945219 32945344 -149469898 - MLT1G1 LTR MaLR -224 371 247 309 299 15 44 chr6 32945533 32945670 -149469572 - L1ME1 LINE L1 -2142 4004 3872 481 371 102 12 chr6 32945704 32946046 -149469196 - L2 LINE L2 -61 3252 2880 560 296 139 27 chr6 32946077 32946479 -149468763 - L1ME1 LINE L1 -2749 3397 2951 933 249 47 17 chr6 32946521 32946883 -149468359 - L1M4 LINE L1 -1383 4763 4391 374 262 101 42 chr6 32946986 32947272 -149467970 - L1M4 LINE L1 -1962 4184 3882 189 74 0 0 chr6 32947275 32947302 -149467940 + (TG)n Simple_repeat Simple_repeat 2 28 0 396 221 21 0 chr6 32947303 32947398 -149467844 - L1M4 LINE L1 -2464 3682 3586 201 74 0 0 chr6 32947407 32947434 -149467808 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2879 222 94 22 chr6 32947441 32948356 -149466886 - L1MC4 LINE L1 -1 8041 7061 * 6732 134 9 6 chr6 32948341 32950008 -149465234 - L1PB1 LINE L1 -1 6150 4477 286 260 193 31 chr6 32950080 32950211 -149465031 - MIR SINE MIR -27 181 33 279 228 0 0 chr6 32950600 32950657 -149464585 + L2 LINE L2 3256 3312 -1 22 0 0 0 chr6 32950759 32950781 -149464461 + AT_rich Low_complexity Low_complexity 1 22 0 663 255 26 42 chr6 32951166 32951358 -149463884 + MER5A DNA MER1_type 1 189 0 976 144 0 7 chr6 32953229 32953375 -149461867 + AluSg/x SINE Alu 149 293 -19 22 0 0 0 chr6 32953489 32953511 -149461731 + AT_rich Low_complexity Low_complexity 1 22 0 2098 123 0 7 chr6 32954669 32954953 -149460289 - AluSx SINE Alu -26 286 5 837 187 48 0 chr6 32957714 32957880 -149457362 - FAM SINE Alu 0 175 2 2161 100 3 7 chr6 32957998 32958289 -149456953 - AluSc SINE Alu -19 290 1 422 304 20 7 chr6 32958354 32958502 -149456740 + L1PA12 LINE L1 1 150 -7431 * 10791 212 20 30 chr6 32958498 32960853 -149454389 + L1PA12 LINE L1 1867 4408 -3176 3773 45 0 2 chr6 32960853 32961316 -149453926 - L1PA5 LINE L1 -9 6145 5684 10791 212 20 30 chr6 32961316 32963133 -149452109 + L1PA12 LINE L1 4408 6241 -1343 201 255 0 0 chr6 32963527 32963578 -149451664 + MIR SINE MIR 90 140 -122 327 175 16 0 chr6 32963578 32963641 -149451601 + MER20 DNA MER1_type 156 219 0 269 322 35 0 chr6 32963839 32963926 -149451316 + L2 LINE L2 1822 1911 -1403 565 313 27 20 chr6 32964525 32964819 -149450423 + L1ME1 LINE L1 5871 6166 0 2666 27 0 0 chr6 32965717 32966018 -149449224 + AluYa5 SINE Alu 1 301 -10 1842 113 75 39 chr6 32966742 32967104 -149448138 + THE1C LTR MaLR 1 375 0 2339 152 59 51 chr6 32967140 32967665 -149447577 - L1MA10 LINE L1 0 6334 5806 1725 164 35 57 chr6 32968510 32968882 -149446360 - THE1B LTR MaLR 0 364 1 409 330 122 17 chr6 32970605 32970835 -149444407 + MIR SINE MIR 2 255 -7 204 390 20 20 chr6 32970918 32971064 -149444178 - MIR SINE MIR -112 150 5 5676 160 40 13 chr6 32971251 32973302 -149441940 + L1MA8 LINE L1 4186 6281 -10 3830 124 68 81 chr6 32973658 32974453 -149440789 - LTR1 LTR ERV1 0 785 1 20492 125 19 4 chr6 32975309 32979438 -149435804 - L1PA10 LINE L1 -4 6164 1975 222 242 34 88 chr6 32979438 32979636 -149435606 - L2 LINE L2 -22 3291 3039 369 322 28 21 chr6 32983300 32983443 -149431799 - MIR SINE MIR -47 215 72 21 36 0 0 chr6 32983834 32983862 -149431380 + AT_rich Low_complexity Low_complexity 1 28 0 4107 163 29 0 chr6 32984395 32985121 -149430121 + L1MA7 LINE L1 5501 6247 -44 249 314 21 89 chr6 32985250 32985441 -149429801 - MIR SINE MIR -4 258 81 22132 119 10 53 chr6 32985593 32990587 -149424655 + L1PA8 LINE L1 12 4585 -1587 2910 0 0 0 chr6 32990587 32990898 -149424344 + AluYa5 SINE Alu 1 311 0 22132 119 10 53 chr6 32990898 32992421 -149422821 + L1PA8 LINE L1 4585 6172 0 514 300 148 30 chr6 32992438 32992741 -149422501 - L2 LINE L2 -942 2372 2034 40 37 0 0 chr6 32995971 32996025 -149419217 + AT_rich Low_complexity Low_complexity 1 54 0 5190 142 2 0 chr6 32996025 32997289 -149417953 - L1PA16 LINE L1 -10 6156 4870 794 134 0 30 chr6 32997704 32997838 -149417404 + FLAM_C SINE Alu 1 130 -3 237 216 103 10 chr6 32998035 32998132 -149417110 + L1ME3A LINE L1 50 155 -6241 2301 279 60 21 chr6 32998280 32999547 -149415695 + L1ME3A LINE L1 904 2251 -4145 288 253 11 0 chr6 32999556 32999643 -149415599 + L1ME3A LINE L1 2221 2308 -4088 * 316 161 0 16 chr6 32999639 32999701 -149415541 + L1MA4 LINE L1 6023 6083 -217 667 148 9 0 chr6 32999728 32999843 -149415399 + L1MA9 LINE L1 6197 6312 0 227 216 0 0 chr6 33000049 33000086 -149415156 - MER21B LTR ERV1 -768 95 59 280 332 83 18 chr6 33000105 33000334 -149414908 + L2 LINE L2 3056 3299 -14 285 29 0 0 chr6 33002217 33002251 -149412991 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2824 280 76 20 chr6 33002407 33002977 -149412265 + L1ME3A LINE L1 2558 3095 -3120 204 97 0 0 chr6 33002977 33003008 -149412234 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2824 280 76 20 chr6 33003008 33003571 -149411671 + L1ME3A LINE L1 3095 3625 -2590 2503 59 0 0 chr6 33003571 33003876 -149411366 + AluY SINE Alu 1 305 -6 2824 280 76 20 chr6 33003876 33004765 -149410477 + L1ME3A LINE L1 3625 4737 -1478 1021 221 85 18 chr6 33004837 33005168 -149410074 + L1ME3A LINE L1 5497 5849 -382 438 175 68 19 chr6 33005214 33005317 -149409925 + L1ME3A LINE L1 6117 6224 -15 24 0 0 0 chr6 33005548 33005572 -149409670 + AT_rich Low_complexity Low_complexity 1 24 0 390 183 0 21 chr6 33005613 33005706 -149409536 + L1MC/D LINE L1 5338 5428 -2380 2659 216 83 111 chr6 33005908 33006899 -149408343 + L1MD2 LINE L1 142 1104 -5439 1434 215 18 29 chr6 33006898 33007284 -149407958 + L1MD2 LINE L1 1313 1694 -4846 * 4355 234 69 16 chr6 33007377 33009878 -149405364 + L1MD2 LINE L1 4067 6710 -43 305 294 92 12 chr6 33010069 33010232 -149405010 + L1MC/D LINE L1 5640 5815 -1993 243 309 16 8 chr6 33010232 33010358 -149404884 + (TA)n Simple_repeat Simple_repeat 1 127 0 1797 184 10 0 chr6 33010879 33011178 -149404064 - AluSx SINE Alu -10 302 1 527 234 0 0 chr6 33011627 33011734 -149403508 + L1MC/D LINE L1 5665 5771 -588 452 356 172 4 chr6 33011751 33012298 -149402944 + L2 LINE L2 2334 2972 -342 2496 64 0 0 chr6 33012313 33012611 -149402631 - AluY SINE Alu -13 298 1 1008 291 86 39 chr6 33012690 33013178 -149402064 + L2 LINE L2 715 1225 -2089 1074 193 8 29 chr6 33013215 33013453 -149401789 + L1M3e LINE L1 1728 1960 -5070 969 318 163 13 chr6 33013480 33014034 -149401208 + L2 LINE L2 1310 1946 -1368 8404 219 74 2 chr6 33016181 33017956 -149397286 - L1M2 LINE L1 -4944 1905 2 1848 115 67 11 chr6 33018059 33018369 -149396873 - AluSx SINE Alu 0 312 1 614 327 45 5 chr6 33018791 33019011 -149396231 + MIR SINE MIR 31 259 -3 812 216 5 44 chr6 33019027 33019231 -149396011 + AluJo SINE Alu 117 312 0 30 59 0 0 chr6 33019232 33019283 -149395959 + AT_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr6 33019508 33019542 -149395700 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr6 33019815 33019848 -149395394 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr6 33020648 33020676 -149394566 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr6 33024038 33024061 -149391181 + AT_rich Low_complexity Low_complexity 1 23 0 1038 250 80 9 chr6 33024331 33024655 -149390587 - L1MC4a LINE L1 -1942 5866 5520 537 232 56 14 chr6 33026163 33026305 -149388937 - MLT1G LTR MaLR -1 589 442 366 23 0 0 chr6 33026310 33026353 -149388889 + (TC)n Simple_repeat Simple_repeat 1 43 0 369 237 101 8 chr6 33026469 33026594 -149388648 - MLT1H1 LTR MaLR -361 188 1 349 315 61 90 chr6 33026607 33026953 -149388289 - MLT1H1-int LTR MaLR -14 1357 1022 1922 155 3 19 chr6 33027032 33027348 -149387894 - AluSx SINE Alu -1 311 1 1862 200 49 30 chr6 33027505 33027999 -149387243 - L1 LINE L1 -1347 4799 4297 4194 212 62 13 chr6 33028018 33029503 -149385739 + L1MA10 LINE L1 4757 6323 -11 713 199 72 18 chr6 33029961 33030127 -149385115 + MLT2B1 LTR ERVL 3 177 -343 272 159 0 0 chr6 33030125 33030169 -149385073 + MLT2C2 LTR ERVL 421 464 0 * 1519 318 75 15 chr6 33030420 33031877 -149383365 + HERV16 LTR ERVL 900 2548 -3106 504 286 29 39 chr6 33031891 33032098 -149383144 - MLT1H1 LTR MaLR -338 204 1 688 299 111 0 chr6 33032180 33032387 -149382855 - MIR SINE MIR -30 232 3 9073 77 7 7 chr6 33032488 33034501 -149380741 + L1PA7 LINE L1 4141 6152 -2 710 179 26 0 chr6 33034503 33034620 -149380622 - MER45 DNA AcHobo -1453 128 9 664 324 41 5 chr6 33034798 33035017 -149380225 + MIR SINE MIR 33 259 -3 7361 241 21 16 chr6 33035054 33036703 -149378539 + L1PA12 LINE L1 2 1657 -5924 13878 226 37 21 chr6 33036752 33040438 -149374804 + L1PA12 LINE L1 2461 6206 -1378 21 57 0 0 chr6 33041323 33041358 -149373884 + AT_rich Low_complexity Low_complexity 1 35 0 1947 137 14 0 chr6 33042627 33042912 -149372330 + AluSx SINE Alu 12 300 -12 21 36 0 0 chr6 33043024 33043052 -149372190 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr6 33044506 33044534 -149370708 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 33045070 33045091 -149370151 + AT_rich Low_complexity Low_complexity 1 21 0 405 261 96 27 chr6 33045443 33045631 -149369611 - MLT1G LTR MaLR -1 589 389 8171 201 45 30 chr6 33045768 33048551 -149366691 + L1MA9 LINE L1 3477 6305 -7 1840 175 53 42 chr6 33048577 33049279 -149365963 + L1MCa LINE L1 1127 1927 -4499 232 172 52 0 chr6 33049286 33049344 -149365898 + L1MCa LINE L1 1998 2058 -4368 * 2214 136 5 22 chr6 33049340 33049744 -149365498 - L1P5 LINE L1 -411 5745 5349 1496 189 0 6 chr6 33049739 33050067 -149365175 + L1P5 LINE L1 5008 5333 -813 * 290 285 39 0 chr6 33050436 33050566 -149364676 + LTR67 LTR ERVL 411 545 -12 529 168 88 16 chr6 33050645 33050770 -149364472 + THE1C LTR MaLR 1 134 -241 247 300 10 30 chr6 33050783 33050883 -149364359 + MLT1J LTR MaLR 346 443 -68 292 280 0 51 chr6 33051110 33051228 -149364014 + L1MC4 LINE L1 7336 7447 -595 511 211 66 119 chr6 33051273 33051700 -149363542 + L1MC5 LINE L1 7508 7911 -50 21 57 0 0 chr6 33052091 33052126 -149363116 + AT_rich Low_complexity Low_complexity 1 35 0 2314 89 6 0 chr6 33052160 33052473 -149362769 + L1PA13 LINE L1 5844 6158 -5 191 36 36 0 chr6 33053665 33053693 -149361549 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 274 256 24 143 chr6 33054331 33054404 -149360838 - L2 LINE L2 -216 3056 3013 2557 64 0 6 chr6 33054404 33054715 -149360527 + AluY SINE Alu 1 309 -2 274 256 24 143 chr6 33054715 33054809 -149360433 - L2 LINE L2 -259 3013 2909 283 435 36 0 chr6 33055314 33055452 -149359790 - L2 LINE L2 -14 3258 3116 244 348 101 40 chr6 33055684 33055911 -149359331 - L2 LINE L2 -436 2878 2638 237 296 8 104 chr6 33056306 33056431 -149358811 - L3 LINE CR1 -42 1535 1423 1902 119 24 7 chr6 33056451 33056745 -149358497 + L1PB4 LINE L1 5852 6150 -6 24 0 0 0 chr6 33057115 33057139 -149358103 + AT_rich Low_complexity Low_complexity 1 24 0 5363 151 26 11 chr6 33058983 33060372 -149354870 - L1MA8 LINE L1 -5 6286 4874 836 158 19 0 chr6 33060369 33060527 -149354715 - L1MA8 LINE L1 -2238 3908 3748 * 2687 237 11 27 chr6 33061951 33062614 -149352628 - MER82 DNA MER2_type -1 652 1 393 294 84 8 chr6 33062620 33062739 -149352503 - MIR SINE MIR -65 143 16 3162 24 0 0 chr6 33062908 33063289 -149351953 + L1P2 LINE L1 5433 5813 -342 774 237 77 67 chr6 33063297 33063672 -149351570 - L1MC4 LINE L1 -214 7828 7450 21 36 0 0 chr6 33064018 33064046 -149351196 + AT_rich Low_complexity Low_complexity 1 28 0 199 339 27 45 chr6 33065698 33065810 -149349432 - MIR SINE MIR -128 134 25 456 316 26 94 chr6 33067403 33067524 -149347718 + MIR SINE MIR 5 133 -129 2106 118 44 0 chr6 33067524 33067845 -149347397 - L1PA15 LINE L1 -6 6159 5825 195 42 0 0 chr6 33067852 33067876 -149347366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 456 316 26 94 chr6 33067876 33068012 -149347230 + MIR SINE MIR 139 252 -10 1597 204 58 94 chr6 33069045 33069648 -149345594 - L1ME1 LINE L1 -4 6162 5582 2327 115 19 25 chr6 33069952 33070316 -149344926 + THE1B LTR MaLR 3 364 0 360 369 12 31 chr6 33070330 33070490 -149344752 + MIR3 SINE MIR 43 199 -9 2271 100 13 0 chr6 33070935 33071234 -149344008 - AluSq SINE Alu -10 303 1 205 210 12 62 chr6 33071313 33071394 -149343848 + GA-rich Low_complexity Low_complexity 3 79 0 2484 76 0 3 chr6 33073936 33074238 -149341004 - AluSc SINE Alu -8 301 1 1216 198 72 52 chr6 33074918 33075266 -149339976 + L1MC1 LINE L1 5939 6293 -40 2196 125 0 0 chr6 33075555 33075860 -149339382 - AluSx SINE Alu -7 305 1 4604 151 52 23 chr6 33076488 33078273 -149336969 + L1PA15 LINE L1 4351 6164 -1 861 291 60 37 chr6 33078366 33079022 -149336220 + L1MEc LINE L1 1393 2063 -4333 201 122 27 68 chr6 33079077 33079151 -149336091 + A-rich Low_complexity Low_complexity 1 71 0 309 306 11 50 chr6 33079152 33079332 -149335910 + L1M3 LINE L1 8 180 -6362 290 287 51 19 chr6 33079698 33079855 -149335387 + L1M3 LINE L1 713 874 -5668 481 211 70 13 chr6 33080039 33080195 -149335047 + L1M3 LINE L1 1072 1236 -5310 351 229 115 0 chr6 33080217 33080313 -149334929 + MLT2B3 LTR ERVL 125 231 -323 738 245 137 19 chr6 33080313 33080635 -149334607 + L1ME3A LINE L1 5400 5759 -407 538 232 0 7 chr6 33080634 33080772 -149334470 + L1M3 LINE L1 5295 5431 -1213 * 281 29 0 0 chr6 33080825 33080860 -149334382 + U2 snRNA snRNA 1 35 -153 1167 208 85 11 chr6 33080890 33081370 -149333872 + L1M3 LINE L1 5434 5941 -721 940 179 73 5 chr6 33081362 33081554 -149333688 + L1MA9 LINE L1 6041 6251 -61 * 1903 107 7 4 chr6 33081554 33081824 -149333418 + AluSx SINE Alu 38 308 -4 940 179 73 5 chr6 33081824 33081849 -149333393 + L1MA9 LINE L1 6251 6273 -39 2101 133 3 0 chr6 33081867 33082160 -149333082 + AluSx SINE Alu 1 294 -18 2402 39 43 0 chr6 33082160 33082441 -149332801 + AluY SINE Alu 1 294 -17 236 213 0 0 chr6 33082456 33082503 -149332739 + L1M3 LINE L1 5923 5969 -709 * 541 185 15 0 chr6 33082499 33082629 -149332613 + L1ME2 LINE L1 5611 5742 -422 1187 257 73 75 chr6 33082637 33083197 -149332045 - MLT1F1 LTR MaLR -8 559 1 1598 199 38 28 chr6 33083197 33083619 -149331623 + L1ME2 LINE L1 5738 6163 -1 534 288 95 31 chr6 33084093 33084315 -149330927 + MIR SINE MIR 14 249 -13 443 279 121 6 chr6 33084559 33084724 -149330518 + MIR SINE MIR 50 233 -29 312 285 168 74 chr6 33085113 33085369 -149329873 + L1ME3A LINE L1 5888 6167 -3 24 0 0 0 chr6 33086108 33086132 -149329110 + AT_rich Low_complexity Low_complexity 1 24 0 2077 106 0 47 chr6 33086137 33086438 -149328804 - AluSq SINE Alu -26 287 1 275 288 88 40 chr6 33086438 33086688 -149328554 + L1MC4 LINE L1 7748 8009 -33 21 57 0 0 chr6 33086697 33086732 -149328510 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr6 33086871 33086892 -149328350 + AT_rich Low_complexity Low_complexity 1 21 0 202 229 16 16 chr6 33088764 33088825 -149326417 + GA-rich Low_complexity Low_complexity 1 61 0 2558 221 25 7 chr6 33088992 33089544 -149325698 + REP3 LTR ERV 1 562 0 1671 202 23 8 chr6 33089590 33089941 -149325301 - MLT1A1 LTR MaLR -3 362 7 554 265 50 42 chr6 33090886 33091205 -149324037 + L1MEc LINE L1 1883 2168 -4372 3947 145 28 2 chr6 33091325 33091944 -149323298 + MER41B LTR ERV1 1 635 0 3825 246 27 55 chr6 33091946 33093119 -149322123 + L1M4 LINE L1 2 1141 -5401 1469 168 15 4 chr6 33093260 33093522 -149321720 + MLT1B LTR MaLR 115 379 -11 1929 261 21 26 chr6 33094627 33095282 -149319960 - L1M4 LINE L1 -866 5280 4629 1146 211 42 50 chr6 33095321 33095658 -149319584 + L1M4 LINE L1 4283 4616 -2028 581 322 15 18 chr6 33095690 33096016 -149319226 - L1MEc LINE L1 -4621 1775 1451 349 267 85 28 chr6 33096049 33096225 -149319017 + L1M4 LINE L1 5245 5430 -1214 1203 219 46 63 chr6 33096713 33097170 -149318072 + Charlie1b DNA MER1_type 37 485 -38 1388 215 56 24 chr6 33097844 33098201 -149317041 + MLT1B LTR MaLR 25 396 0 1462 47 0 0 chr6 33099833 33100005 -149315237 - L1PA4 LINE L1 -591 5564 5393 5104 41 0 3 chr6 33100005 33100653 -149314589 + L1PA4 LINE L1 5545 6155 0 270 247 282 34 chr6 33102450 33102741 -149312501 + L2 LINE L2 2912 3274 -39 311 300 0 11 chr6 33102964 33103054 -149312188 - MER81 DNA DNA -22 92 4 2194 179 11 0 chr6 33103238 33103613 -149311629 + MLT1B LTR MaLR 1 379 -11 1417 199 52 0 chr6 33104753 33105080 -149310162 - L1MB5 LINE L1 -10 6164 5821 21 0 0 0 chr6 33105386 33105407 -149309835 + AT_rich Low_complexity Low_complexity 1 21 0 7209 78 7 40 chr6 33106774 33108571 -149306671 - L1PA7 LINE L1 -1 6153 4428 403 276 28 11 chr6 33108573 33108704 -149306538 - FRAM SINE Alu -9 157 55 302 320 55 20 chr6 33109046 33109246 -149305996 - MLT1L LTR MaLR -5 610 404 21 0 0 0 chr6 33111289 33111310 -149303932 + AT_rich Low_complexity Low_complexity 1 21 0 417 335 43 0 chr6 33112091 33112276 -149302966 - MIR SINE MIR -51 211 19 2324 100 0 7 chr6 33114202 33114503 -149300739 - AluSg SINE Alu -11 299 1 24 0 0 0 chr6 33114834 33114858 -149300384 + AT_rich Low_complexity Low_complexity 1 24 0 207 207 37 44 chr6 33114929 33115064 -149300178 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 36 0 0 chr6 33115095 33115123 -149300119 + AT_rich Low_complexity Low_complexity 1 28 0 24 100 0 0 chr6 33115615 33115695 -149299547 + AT_rich Low_complexity Low_complexity 1 80 0 248 178 32 70 chr6 33115745 33115930 -149299312 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 29 60 0 0 chr6 33115967 33116017 -149299225 + AT_rich Low_complexity Low_complexity 1 50 0 207 302 112 15 chr6 33116272 33116477 -149298765 - L2 LINE L2 -167 3146 2922 3651 180 13 28 chr6 33117682 33118105 -149297137 + L1MB1 LINE L1 5408 5817 -351 2153 121 3 0 chr6 33118105 33118394 -149296848 + AluSg SINE Alu 1 290 -20 3651 180 13 28 chr6 33118394 33118681 -149296561 + L1MB1 LINE L1 5817 6107 -61 415 272 48 7 chr6 33118698 33118845 -149296397 + MIR SINE MIR 97 249 -13 497 292 83 35 chr6 33118876 33119310 -149295932 - L2 LINE L2 -137 3176 2712 1280 180 6 84 chr6 33119310 33119633 -149295609 - AluJb SINE Alu -14 298 1 497 292 83 35 chr6 33119633 33119657 -149295585 - L2 LINE L2 -601 2712 2691 289 185 36 0 chr6 33119657 33119719 -149295523 + L1MB1 LINE L1 6103 6166 -2 1670 156 184 19 chr6 33123226 33123591 -149291651 + MSTA LTR MaLR 1 425 -3 257 200 50 100 chr6 33124061 33124141 -149291101 - L1ME LINE L1 -476 5694 5619 658 129 89 0 chr6 33124232 33124356 -149290886 - L1MD1 LINE L1 0 6242 6108 3472 264 27 17 chr6 33124356 33125738 -149289504 - L1 LINE L1 -3115 4450 3045 1317 118 0 0 chr6 33125738 33125916 -149289326 - LTR1 LTR ERV1 0 785 608 1235 191 107 105 chr6 33128759 33129188 -149286054 - MLT1C LTR MaLR -4 463 34 489 237 23 0 chr6 33129632 33129763 -149285479 + MER94 DNA DNA 1 134 0 1952 182 14 6 chr6 33130067 33130429 -149284813 - MLT1A1 LTR MaLR 0 365 1 1415 234 89 30 chr6 33134587 33135023 -149280219 - MLT1C LTR MaLR 0 467 6 188 235 39 0 chr6 33135365 33135416 -149279826 - MIR SINE MIR -62 146 94 241 207 12 24 chr6 33136045 33136127 -149279115 - L1M4 LINE L1 -3166 2980 2900 572 286 48 31 chr6 33136873 33137336 -149277906 + HERV16 LTR ERVL 596 1091 -3905 2340 112 21 21 chr6 33137740 33138115 -149277127 - THE1C LTR MaLR 0 375 1 2181 134 0 7 chr6 33138153 33138460 -149276782 + AluSx SINE Alu 2 306 -6 2060 159 105 0 chr6 33138551 33138904 -149276338 + MLT1B LTR MaLR 1 390 0 237 342 0 0 chr6 33139266 33139345 -149275897 + MIR SINE MIR 20 98 -164 1709 222 28 8 chr6 33139576 33139597 -149275645 + L1MB7 LINE L1 5767 5786 -398 2024 202 60 14 chr6 33139597 33140043 -149275199 + MLT1C LTR MaLR 1 467 0 1709 222 28 8 chr6 33140043 33140418 -149274824 + L1MB7 LINE L1 5786 6171 -13 336 376 64 0 chr6 33140765 33140906 -149274336 + L2 LINE L2 3116 3265 -7 1901 231 29 58 chr6 33141159 33141336 -149273906 + L1ME1 LINE L1 4759 4940 -1226 2267 91 7 10 chr6 33141336 33141645 -149273597 - AluSg1 SINE Alu -1 308 1 1901 231 29 58 chr6 33141645 33142609 -149272633 + L1ME1 LINE L1 4940 5838 -328 1925 195 40 5 chr6 33142637 33143032 -149272210 - L1MB1 LINE L1 -41 6127 5719 224 241 139 46 chr6 33143437 33143545 -149271697 + MIR3 SINE MIR 38 155 -53 244 224 17 0 chr6 33143841 33143899 -149271343 + (CA)n Simple_repeat Simple_repeat 2 60 0 256 277 78 43 chr6 33144249 33144390 -149270852 - MIR SINE MIR -36 226 81 1288 174 38 38 chr6 33145941 33146234 -149269008 - MER9 LTR ERVK 0 511 219 924 208 46 63 chr6 33147294 33147578 -149267664 + L1MC/D LINE L1 5479 5757 -2028 24 32 0 0 chr6 33147673 33147704 -149267538 + AT_rich Low_complexity Low_complexity 1 31 0 254 83 0 42 chr6 33147712 33147760 -149267482 + PABL_A-int LTR ERV1 3294 3339 -1676 8524 140 59 53 chr6 33147778 33149427 -149265815 - MER4C-int LTR ERV1 -1798 4800 3164 1539 185 0 21 chr6 33149427 33149713 -149265529 - AluJb SINE Alu -20 292 13 8524 140 59 53 chr6 33149713 33150334 -149264908 - MER4C-int LTR ERV1 -3434 3164 1506 372 104 78 26 chr6 33150321 33150398 -149264844 - MER4C-int LTR ERV1 -5484 1114 1034 * 2012 206 168 0 chr6 33150398 33150921 -149264321 + LTR36 LTR ERV1 1 611 0 2053 144 129 85 chr6 33150921 33151766 -149263476 - MER4C-int LTR ERV1 -5561 1037 121 4540 146 17 20 chr6 33151767 33152480 -149262762 - MER50 LTR ERV1 -23 711 1 504 119 165 28 chr6 33152480 33152504 -149262738 - MER4C-int LTR ERV1 -6474 124 105 1794 161 0 13 chr6 33152504 33152815 -149262427 + AluJb SINE Alu 1 307 -5 504 119 165 28 chr6 33152815 33152899 -149262343 - MER4C-int LTR ERV1 -6493 105 1 2444 119 112 5 chr6 33152902 33153322 -149261920 - MER4C LTR ERV1 0 465 1 290 261 87 65 chr6 33158472 33158702 -149256540 - SN5 Other centromeric -220 235 1 260 185 0 15 chr6 33159901 33159966 -149255276 + CT-rich Low_complexity Low_complexity 4 67 0 180 245 0 0 chr6 33160178 33160231 -149255011 + (TG)n Simple_repeat Simple_repeat 1 53 0 1631 180 3 22 chr6 33160564 33160881 -149254361 + AluJb SINE Alu 1 311 -1 1773 254 56 13 chr6 33161401 33162007 -149253235 - L1M4 LINE L1 -865 5281 4650 1136 230 29 71 chr6 33162062 33162444 -149252798 + L1M4 LINE L1 3785 4150 -1996 591 264 76 44 chr6 33162444 33162758 -149252484 - L1MCa LINE L1 -4617 1990 1474 324 266 11 11 chr6 33162789 33162883 -149252359 + L1M4 LINE L1 4745 4838 -1308 221 318 47 28 chr6 33163013 33163120 -149252122 + MIR SINE MIR 144 252 -10 2302 126 113 13 chr6 33163224 33163613 -149251629 + MSTA LTR MaLR 1 428 0 186 302 222 5 chr6 33165111 33165300 -149249942 + L2 LINE L2 2845 3074 -239 501 270 0 0 chr6 33165714 33165825 -149249417 - MER81 DNA DNA -1 113 3 2092 167 27 3 chr6 33166010 33166375 -149248867 + MLT1B LTR MaLR 1 374 -16 1418 230 18 0 chr6 33167503 33167846 -149247396 - L1MB5 LINE L1 -9 6165 5817 2211 103 3 0 chr6 33168837 33169137 -149246105 - AluSp SINE Alu -12 301 1 4025 240 66 12 chr6 33169738 33171085 -149244157 - L1M4 LINE L1 -2507 3639 2220 3283 254 109 21 chr6 33171099 33171247 -149243995 + L1M4c LINE L1 906 1040 -5344 2708 19 0 0 chr6 33171247 33171558 -149243684 + AluYa5 SINE Alu 1 311 0 3283 254 109 21 chr6 33171558 33172824 -149242418 + L1M4c LINE L1 1040 2444 -3940 1326 135 4 58 chr6 33172816 33173076 -149242166 + L1MA5 LINE L1 5814 6059 -241 * 2867 130 2 14 chr6 33173073 33173497 -149241745 + L1P3 LINE L1 1 419 -6042 1058 197 19 5 chr6 33173510 33173718 -149241524 + MER20 DNA MER1_type 1 211 -8 4439 261 138 26 chr6 33173745 33174432 -149240810 - L2 LINE L2 -537 2777 2168 1719 176 90 9 chr6 33174432 33174778 -149240464 - MLT1A2 LTR MaLR 0 374 1 4439 261 138 26 chr6 33174778 33175715 -149239527 - L2 LINE L2 -1146 2168 971 535 256 63 19 chr6 33175732 33175939 -149239303 - L2 LINE L2 -2571 743 528 279 279 0 0 chr6 33175994 33176062 -149239180 - MIR SINE MIR -110 152 85 212 242 153 48 chr6 33177348 33177472 -149237770 + MIR SINE MIR 71 207 -55 182 211 77 39 chr6 33177568 33177620 -149237622 - L2 LINE L2 -3 3269 3216 * 839 206 180 0 chr6 33177596 33177790 -149237452 - MIR SINE MIR -27 235 7 187 191 0 48 chr6 33178149 33178191 -149237051 - L3 LINE CR1 -20 1557 1518 * 410 306 35 21 chr6 33178159 33178303 -149236939 - MIR3 SINE MIR -32 176 31 1099 235 35 53 chr6 33178458 33178777 -149236465 - MER93a LTR ERV1 0 402 90 272 402 9 0 chr6 33178894 33179006 -149236236 + L3 LINE CR1 988 1100 -477 195 114 0 0 chr6 33180787 33180822 -149234420 + (GA)n Simple_repeat Simple_repeat 1 35 0 309 220 99 11 chr6 33182441 33182532 -149232710 + MARNA DNA Mariner 154 252 -334 5229 172 20 19 chr6 33182542 33182629 -149232613 + MER49 LTR ERV1 10 95 -828 1891 152 0 0 chr6 33182629 33182931 -149232311 + AluSx SINE Alu 1 302 -10 5229 172 20 19 chr6 33182931 33183756 -149231486 + MER49 LTR ERV1 95 923 0 6323 62 5 0 chr6 33184168 33184944 -149230298 + LTR17 LTR ERV1 1 780 0 185 346 103 0 chr6 33185947 33186025 -149229217 + L2 LINE L2 2208 2293 -1021 253 345 86 83 chr6 33186069 33186443 -149228799 + L2 LINE L2 2898 3272 0 2011 172 9 0 chr6 33186580 33186929 -149228313 - MER47A DNA MER2_type 0 366 15 2311 192 24 2 chr6 33187485 33187902 -149227340 - MSTB LTR MaLR 0 426 1 4475 116 8 0 chr6 33187938 33188568 -149226674 + MER41B LTR ERV1 1 635 0 390 269 141 39 chr6 33188919 33189075 -149226167 + L1ME3A LINE L1 5725 5896 -274 3423 140 11 9 chr6 33189086 33189629 -149225613 - LTR10A LTR ERV1 -65 544 1 201 208 0 21 chr6 33190077 33190125 -149225117 + (TTATA)n Simple_repeat Simple_repeat 5 51 0 21 0 0 0 chr6 33190156 33190177 -149225065 + AT_rich Low_complexity Low_complexity 1 21 0 290 263 16 97 chr6 33190177 33190245 -149224997 + L1ME LINE L1 5592 5664 -457 1746 123 49 3 chr6 33190245 33190406 -149224836 - AluSx SINE Alu -15 297 116 233 29 0 29 chr6 33190406 33190441 -149224801 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1746 123 49 3 chr6 33190441 33190563 -149224679 - AluSx SINE Alu -196 116 1 290 263 16 97 chr6 33190563 33190700 -149224542 + L1ME LINE L1 5664 5740 -381 352 276 66 44 chr6 33191737 33192073 -149223169 + L1ME LINE L1 1383 1534 -4889 2205 135 55 32 chr6 33192073 33192573 -149222669 + Tigger2 DNA MER2_type 3 563 -2155 2052 113 20 17 chr6 33192573 33192874 -149222368 - AluSx SINE Alu -8 304 3 2205 135 55 32 chr6 33192874 33193060 -149222182 + Tigger2 DNA MER2_type 563 743 -1975 1662 151 0 4 chr6 33193126 33193385 -149221857 + Tigger2 DNA MER2_type 2461 2718 0 1613 251 52 12 chr6 33193386 33193884 -149221358 + L1MC4a LINE L1 6706 7223 -585 2044 199 79 49 chr6 33193899 33194309 -149220933 + L1ME2 LINE L1 5269 5665 -499 759 78 0 0 chr6 33194309 33194412 -149220830 + (TTC)n Simple_repeat Simple_repeat 2 104 0 1734 129 8 8 chr6 33194418 33194674 -149220568 - AluJb SINE Alu -52 260 5 2044 199 79 49 chr6 33194674 33194865 -149220377 + L1ME2 LINE L1 5669 5895 -269 1798 157 64 0 chr6 33194872 33195152 -149220090 + AluJo SINE Alu 1 298 -14 849 243 80 21 chr6 33195161 33195400 -149219842 - L1ME2 LINE L1 -9 6155 5903 674 68 0 78 chr6 33195425 33195528 -149219714 - AluJb SINE Alu -9 303 209 242 236 0 0 chr6 33195535 33195590 -149219652 + L1ME3 LINE L1 6100 6154 -8 1885 174 0 3 chr6 33195595 33195899 -149219343 - AluJo SINE Alu -7 305 3 536 206 37 15 chr6 33195913 33196049 -149219193 + L1ME2 LINE L1 5813 5951 -213 455 228 189 0 chr6 33196056 33196183 -149219059 + L1ME2 LINE L1 6005 6155 -9 424 267 96 41 chr6 33196663 33196809 -149218433 + MIR SINE MIR 29 182 -80 592 309 92 0 chr6 33197084 33197301 -149217941 + MIR SINE MIR 20 256 -6 182 100 0 0 chr6 33198163 33198193 -149217049 + L2 LINE L2 3026 3055 -217 939 263 29 24 chr6 33198437 33198878 -149216364 + L1MC4 LINE L1 7610 8041 -1 26 30 0 0 chr6 33201009 33201042 -149214200 + AT_rich Low_complexity Low_complexity 1 33 0 2496 81 3 0 chr6 33201167 33201475 -149213767 - AluSx SINE Alu -3 309 1 201 308 48 29 chr6 33201550 33201654 -149213588 - MIR SINE MIR -78 130 25 1241 282 55 10 chr6 33202207 33202590 -149212652 - MLT1I LTR MaLR -7 402 3 233 337 68 22 chr6 33202590 33202919 -149212323 + L2 LINE L2 2631 2973 -299 255 341 68 0 chr6 33203010 33203098 -149212144 + L2 LINE L2 3208 3301 -12 858 249 6 6 chr6 33203099 33203276 -149211966 + MER8 DNA MER2_type 1 177 -62 204 40 0 0 chr6 33203790 33203815 -149211427 + (TG)n Simple_repeat Simple_repeat 2 26 0 473 228 0 22 chr6 33204254 33204346 -149210896 + MER21B LTR ERV1 1 90 -773 2820 231 82 43 chr6 33204368 33205094 -149210148 + MER21B LTR ERV1 19 780 -83 2382 69 0 3 chr6 33205094 33205420 -149209822 + AluY SINE Alu 1 325 0 2820 231 82 43 chr6 33205420 33205458 -149209784 + MER21B LTR ERV1 780 815 -48 2350 318 42 57 chr6 33205558 33206277 -149208965 - HERVL LTR ERVL -1375 4279 3589 1734 244 72 17 chr6 33206277 33206801 -149208441 + MLT1H1 LTR MaLR 3 555 0 2350 318 42 57 chr6 33206801 33207422 -149207820 - HERVL LTR ERVL -2065 3589 2960 272 200 0 0 chr6 33207625 33207670 -149207572 - MER63 DNA MER1_type -254 806 762 274 390 12 0 chr6 33207734 33207903 -149207339 - HERVL LTR ERVL -2857 2907 2737 831 225 115 16 chr6 33207922 33208166 -149207076 - MER63 DNA MER1_type 0 1060 793 688 258 0 19 chr6 33209017 33209172 -149206070 - MER63 DNA MER1_type -237 825 674 2258 112 7 0 chr6 33209340 33209636 -149205606 + AluSg SINE Alu 1 298 -12 851 330 71 21 chr6 33209675 33210054 -149205188 - HERVL LTR ERVL -3245 2519 2122 345 328 25 8 chr6 33210741 33210863 -149204379 + MIR SINE MIR 31 154 -108 485 287 64 35 chr6 33210884 33211086 -149204156 + MER63A DNA MER1_type 1 208 -2 330 333 60 0 chr6 33211357 33211507 -149203735 + MIR SINE MIR 32 190 -72 188 148 204 0 chr6 33211614 33211668 -149203574 + L2 LINE L2 3246 3310 -3 213 294 29 0 chr6 33211692 33211760 -149203482 + GA-rich Low_complexity Low_complexity 3 72 0 806 182 31 0 chr6 33211956 33212115 -149203127 + L1MB7 LINE L1 6005 6168 -16 2226 113 17 0 chr6 33212145 33212446 -149202796 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 33212577 33212607 -149202635 + AT_rich Low_complexity Low_complexity 1 30 0 227 239 0 0 chr6 33212923 33212969 -149202273 + L2 LINE L2 3026 3071 -201 238 246 18 0 chr6 33213502 33213559 -149201683 + L2 LINE L2 3256 3313 0 238 350 50 0 chr6 33215261 33215361 -149199881 - MIR SINE MIR -73 135 31 2241 113 9 14 chr6 33215713 33216059 -149199183 - MER47A DNA MER2_type 0 366 23 601 213 126 6 chr6 33216063 33216237 -149199005 - MIR SINE MIR -52 210 16 246 105 0 0 chr6 33216544 33216582 -149198660 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 2101 86 32 18 chr6 33216928 33217207 -149198035 + AluSg SINE Alu 1 283 -27 3323 147 27 52 chr6 33217821 33218280 -149196962 + LTR39 LTR ERV1 1 470 -313 1108 194 163 4 chr6 33218280 33218538 -149196704 - AluJo SINE Alu -3 299 1 3323 147 27 52 chr6 33218538 33218619 -149196623 + LTR39 LTR ERV1 470 552 -231 2093 100 14 17 chr6 33218619 33218910 -149196332 + AluY SINE Alu 1 290 -21 3323 147 27 52 chr6 33218910 33218979 -149196263 + LTR39 LTR ERV1 552 597 -186 1875 181 0 0 chr6 33218979 33219282 -149195960 - AluJb SINE Alu -9 303 1 3323 147 27 52 chr6 33219282 33219304 -149195938 + LTR39 LTR ERV1 597 618 -165 4107 138 67 3 chr6 33219313 33219981 -149195261 + MER50 LTR ERV1 13 723 -11 851 239 11 6 chr6 33220004 33220184 -149195058 + LTR39 LTR ERV1 603 783 0 1049 168 37 0 chr6 33220511 33220529 -149194713 + AluSg/x SINE Alu 112 128 -184 198 0 0 0 chr6 33220529 33220551 -149194691 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1049 168 37 0 chr6 33220551 33220723 -149194519 + AluSg/x SINE Alu 128 309 -3 682 235 67 48 chr6 33220857 33221172 -149194070 + MER34C LTR ERV1 37 357 -228 726 170 59 0 chr6 33221241 33221376 -149193866 + Tigger2 DNA MER2_type 13 155 -2563 1688 159 0 0 chr6 33221378 33221635 -149193607 + AluJb SINE Alu 1 257 -55 2070 100 14 7 chr6 33221654 33221955 -149193287 + AluY SINE Alu 1 303 0 4921 109 52 29 chr6 33221972 33222788 -149192454 + MER4D LTR ERV1 1 903 0 3116 141 71 18 chr6 33222789 33222865 -149192377 + Tigger2 DNA MER2_type 174 244 -2474 1602 174 4 4 chr6 33222865 33223129 -149192113 + AluJb SINE Alu 34 297 -15 3116 141 71 18 chr6 33223129 33223612 -149191630 + Tigger2 DNA MER2_type 244 763 -1955 1458 182 4 0 chr6 33223666 33223908 -149191334 + Tigger2 DNA MER2_type 2475 2717 -1 2225 116 0 0 chr6 33223922 33224223 -149191019 - AluSx SINE Alu -11 301 1 457 212 47 36 chr6 33224224 33224413 -149190829 + MER34C LTR ERV1 368 542 0 1017 267 156 51 chr6 33225099 33225630 -149189612 + MLT1G1 LTR MaLR 1 587 -8 21 0 0 0 chr6 33226210 33226231 -149189011 + AT_rich Low_complexity Low_complexity 1 21 0 261 139 0 0 chr6 33226234 33226277 -149188965 + (TG)n Simple_repeat Simple_repeat 2 44 0 815 216 181 12 chr6 33226347 33226606 -149188636 + Cheshire DNA MER1_type 2063 2365 -55 2372 87 23 0 chr6 33226822 33227122 -149188120 - AluSg1 SINE Alu -2 307 1 382 309 123 18 chr6 33227766 33227986 -149187256 - MIR SINE MIR -8 254 12 207 234 47 0 chr6 33229417 33229481 -149185761 + C-rich Low_complexity Low_complexity 4 70 0 207 194 42 28 chr6 33229681 33229753 -149185489 + GA-rich Low_complexity Low_complexity 5 77 0 457 233 71 36 chr6 33230036 33230379 -149184863 + LTR16A1 LTR ERVL 22 456 -1 410 262 41 0 chr6 33231226 33231348 -149183894 + MIR SINE MIR 86 212 -50 227 350 75 12 chr6 33233520 33233760 -149181482 + L2 LINE L2 2837 3091 -181 214 284 0 30 chr6 33235328 33235395 -149179847 + GA-rich Low_complexity Low_complexity 2 66 0 788 176 7 7 chr6 33236241 33236383 -149178859 + L1PB4 LINE L1 6015 6156 0 21 36 0 0 chr6 33236383 33236411 -149178831 + AT_rich Low_complexity Low_complexity 1 28 0 209 299 82 0 chr6 33237135 33237232 -149178010 - L3b LINE CR1 -88 1495 1391 2100 104 3 54 chr6 33237936 33238252 -149176990 - AluSg SINE Alu -10 300 1 198 345 78 9 chr6 33238807 33238923 -149176319 + MIR3 SINE MIR 78 201 -7 186 363 35 18 chr6 33240105 33240218 -149175024 + MIR SINE MIR 27 141 -67 214 175 25 0 chr6 33240355 33240395 -149174847 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 1822 134 32 0 chr6 33240645 33240929 -149174313 + L1MC1 LINE L1 6028 6320 -13 1922 141 7 26 chr6 33240940 33241244 -149173998 + AluSx SINE Alu 1 298 -14 2157 123 7 0 chr6 33241265 33241565 -149173677 + AluSx SINE Alu 1 302 -10 1249 163 21 118 chr6 33241569 33241722 -149173520 + AluJo SINE Alu 2 168 -134 2139 101 0 39 chr6 33241722 33241856 -149173386 + AluSg SINE Alu 1 139 -171 2426 76 3 0 chr6 33241856 33242157 -149173085 + AluSp SINE Alu 1 302 -11 2139 101 0 39 chr6 33242157 33242328 -149172914 + AluSg SINE Alu 139 294 -16 1249 163 21 118 chr6 33242328 33242340 -149172902 + AluJo SINE Alu 168 180 -122 2046 145 0 3 chr6 33242340 33242637 -149172605 + AluSg SINE Alu 1 296 -14 1249 163 21 118 chr6 33242637 33242802 -149172440 + AluJo SINE Alu 180 301 -1 1192 30 0 0 chr6 33242802 33242934 -149172308 + AluY SINE Alu 1 132 -179 185 312 52 0 chr6 33242986 33243063 -149172179 + MIR SINE MIR 74 154 -108 2413 104 3 0 chr6 33243226 33243535 -149171707 - AluSg SINE Alu 0 310 1 180 339 137 22 chr6 33243536 33243719 -149171523 + L2 LINE L2 2274 2477 -837 195 129 0 0 chr6 33243755 33243786 -149171456 + (ATG)n Simple_repeat Simple_repeat 1 31 0 * 715 251 63 26 chr6 33243780 33243971 -149171271 - MIR SINE MIR -1 261 64 795 164 28 79 chr6 33244696 33244873 -149170369 - MER20 DNA MER1_type -1 218 51 918 226 16 5 chr6 33244921 33245107 -149170135 + MER5A DNA MER1_type 2 189 0 762 165 8 15 chr6 33245458 33245591 -149169651 - FLAM_C SINE Alu -1 132 1 506 274 67 18 chr6 33246008 33246172 -149169070 + MIR SINE MIR 13 184 -78 252 93 37 19 chr6 33248766 33248820 -149166422 + CT-rich Low_complexity Low_complexity 1 55 0 339 217 14 14 chr6 33252003 33252072 -149163170 + MER5A DNA MER1_type 119 187 -2 331 335 0 22 chr6 33253956 33254181 -149161061 + G-rich Low_complexity Low_complexity 1 220 0 316 147 160 0 chr6 33255294 33255369 -149159873 - MER69 DNA AcHobo -2 2524 2438 549 247 29 47 chr6 33255371 33255541 -149159701 - MER69 DNA AcHobo -1059 167 1 26 0 0 0 chr6 33258259 33258285 -149156957 + GC_rich Low_complexity Low_complexity 1 26 0 249 182 15 45 chr6 33258849 33258915 -149156327 + C-rich Low_complexity Low_complexity 4 67 0 235 248 0 75 chr6 33259012 33259145 -149156097 + G-rich Low_complexity Low_complexity 4 126 0 378 0 0 0 chr6 33259911 33259953 -149155289 + (TG)n Simple_repeat Simple_repeat 2 43 0 1992 209 95 62 chr6 33260106 33260187 -149155055 - MER20B DNA MER1_type -4 779 702 1920 102 44 18 chr6 33260187 33260462 -149154780 + AluSx SINE Alu 14 295 -17 1992 209 95 62 chr6 33260462 33261054 -149154188 - MER20B DNA MER1_type -81 702 84 1778 96 12 20 chr6 33261057 33261307 -149153935 + AluSp SINE Alu 60 307 -6 2258 120 0 19 chr6 33262445 33262761 -149152481 - AluSq SINE Alu -3 310 1 2175 79 10 26 chr6 33263349 33263703 -149151539 - AluSg SINE Alu 0 310 1 242 375 42 7 chr6 33263867 33264011 -149151231 - MIR SINE MIR -67 195 47 222 37 0 0 chr6 33264099 33264126 -149151116 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2351 63 0 3 chr6 33264128 33264412 -149150830 - AluY SINE Alu -28 283 1 2402 72 3 16 chr6 33264812 33265116 -149150126 + AluY SINE Alu 1 300 -11 1810 132 108 41 chr6 33265193 33265535 -149149707 - MLT1A1 LTR MaLR 0 365 1 2183 102 17 0 chr6 33265979 33266274 -149148968 + AluSp SINE Alu 2 301 -12 526 174 97 121 chr6 33266651 33266858 -149148384 - MER46C DNA MER2_type -136 202 1 1817 121 7 85 chr6 33266973 33267307 -149147935 + AluSx SINE Alu 1 310 0 413 246 77 23 chr6 33267710 33267840 -149147402 - MIR SINE MIR -111 151 15 317 355 103 0 chr6 33267830 33268064 -149147178 + L2 LINE L2 2855 3112 -160 * 292 91 0 36 chr6 33268108 33268163 -149147079 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 1201 92 7 0 chr6 33268187 33268339 -149146903 + AluSx SINE Alu 5 157 -155 291 114 0 0 chr6 33268361 33268405 -149146837 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1310 158 10 5 chr6 33268414 33268623 -149146619 + AluJb SINE Alu 88 297 -15 277 268 37 37 chr6 33268664 33268746 -149146496 + L2 LINE L2 3168 3249 -64 410 299 79 6 chr6 33268962 33269139 -149146103 - MIR SINE MIR 0 262 73 207 0 0 0 chr6 33269748 33269771 -149145471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1818 155 54 0 chr6 33269773 33270050 -149145192 - AluSx SINE Alu -20 292 1 194 229 36 84 chr6 33270369 33270452 -149144790 + L2 LINE L2 1352 1430 -1884 2163 123 14 0 chr6 33270491 33270784 -149144458 - AluSx SINE Alu -15 297 1 1113 200 140 4 chr6 33270993 33271126 -149144116 - AluSp SINE Alu -2 301 187 1818 113 20 4 chr6 33271126 33271374 -149143868 - AluSx SINE Alu -60 252 1 1113 200 140 4 chr6 33271374 33271505 -149143737 - AluSp SINE Alu -116 187 1 716 169 73 0 chr6 33271614 33271767 -149143475 + FLAM_C SINE Alu 1 162 0 2254 121 0 3 chr6 33271768 33272073 -149143169 + AluSg SINE Alu 1 304 -6 225 65 0 0 chr6 33272140 33272171 -149143071 + (TA)n Simple_repeat Simple_repeat 2 32 0 1702 153 35 0 chr6 33272174 33272428 -149142814 - AluSx SINE Alu -49 263 1 2065 76 36 11 chr6 33272514 33272812 -149142430 + AluY SINE Alu 1 305 0 1290 181 0 5 chr6 33272985 33273189 -149142053 - AluSx SINE Alu -109 203 1 325 258 31 47 chr6 33273653 33273781 -149141461 + MIR SINE MIR 64 189 -73 1065 66 0 29 chr6 33274255 33274392 -149140850 + AluSg SINE Alu 2 134 -176 2103 88 41 17 chr6 33274392 33274686 -149140556 + AluSc SINE Alu 1 301 -8 276 231 130 0 chr6 33274861 33274969 -149140273 - L2 LINE L2 0 3313 3192 399 257 47 74 chr6 33275010 33275122 -149140120 - MIR SINE MIR -35 227 118 2538 60 7 3 chr6 33275122 33275424 -149139818 + AluSp SINE Alu 1 303 -10 399 257 47 74 chr6 33275424 33275459 -149139783 - MIR SINE MIR -144 118 84 479 225 107 53 chr6 33276328 33276515 -149138727 - L3 LINE CR1 -116 1461 1265 2625 58 0 6 chr6 33276815 33277128 -149138114 + AluY SINE Alu 1 311 0 2357 84 10 3 chr6 33277136 33277447 -149137795 + AluSq SINE Alu 1 313 0 410 305 93 7 chr6 33277782 33277933 -149137309 - MIR SINE MIR -2 260 97 1260 211 11 15 chr6 33278014 33278284 -149136958 + MER45C DNA AcHobo 1 269 -684 601 213 48 132 chr6 33278358 33278454 -149136788 + MER45C DNA AcHobo 703 806 -775 2581 61 0 3 chr6 33278454 33278766 -149136476 + AluY SINE Alu 1 311 0 601 213 48 132 chr6 33278766 33278875 -149136367 + MER45C DNA AcHobo 806 882 -699 731 169 0 0 chr6 33278875 33278993 -149136249 - FLAM_C SINE Alu -15 118 1 601 213 48 132 chr6 33278993 33279059 -149136183 + MER45C DNA AcHobo 882 952 -1 300 311 25 8 chr6 33279177 33279299 -149135943 + L2 LINE L2 3190 3313 0 382 250 56 7 chr6 33279339 33279483 -149135759 + L1MC4a LINE L1 5722 5872 -1936 594 144 0 0 chr6 33279692 33279782 -149135460 - FRAM SINE Alu -23 153 64 1399 183 88 14 chr6 33280191 33280476 -149134766 + AluJb SINE Alu 1 306 -6 2368 81 14 0 chr6 33280664 33280960 -149134282 - AluSp SINE Alu -13 300 1 900 242 53 25 chr6 33281172 33281416 -149133826 + MIR SINE MIR 12 262 0 936 235 35 0 chr6 33281951 33282151 -149133091 + MER3 DNA MER1_type 3 209 0 189 0 0 0 chr6 33283189 33283210 -149132032 + (TCC)n Simple_repeat Simple_repeat 1 21 0 1959 88 6 91 chr6 33283423 33283741 -149131501 - AluSc SINE Alu -18 291 1 1046 118 0 0 chr6 33283741 33283877 -149131365 - AluSq/x SINE Alu -177 136 1 491 253 43 12 chr6 33283909 33284071 -149131171 + MIR SINE MIR 89 255 -7 2015 118 12 56 chr6 33284764 33285085 -149130157 + AluSq SINE Alu 1 307 -6 337 335 36 22 chr6 33285673 33285951 -149129291 + L1MC4a LINE L1 5610 5891 -1917 779 143 40 109 chr6 33285982 33286157 -149129085 + FRAM SINE Alu 4 166 0 2253 78 3 33 chr6 33286172 33286478 -149128764 + AluYa5 SINE Alu 1 297 -14 225 0 0 0 chr6 33286495 33286520 -149128722 + (CA)n Simple_repeat Simple_repeat 1 25 0 2200 99 61 0 chr6 33286644 33286938 -149128304 - AluSx SINE Alu 0 312 1 2361 86 17 0 chr6 33287468 33287770 -149127472 + AluSp SINE Alu 1 307 -6 2388 71 7 3 chr6 33288131 33288425 -149126817 + AluSp SINE Alu 2 296 -17 458 233 62 98 chr6 33288427 33288583 -149126659 - L1MC5 LINE L1 -60 7901 7741 1998 146 3 3 chr6 33288583 33288891 -149126351 - AluJb SINE Alu -3 309 2 458 233 62 98 chr6 33288891 33288917 -149126325 - L1MC5 LINE L1 -220 7741 7716 2243 77 24 17 chr6 33288917 33289214 -149126028 + AluY SINE Alu 1 299 -12 458 233 62 98 chr6 33289214 33289399 -149125843 - L1MC5 LINE L1 -245 7716 7546 495 275 55 11 chr6 33289402 33289584 -149125658 - L1MC5 LINE L1 -511 7450 7261 206 281 0 16 chr6 33289899 33289963 -149125279 + L3b LINE CR1 1304 1366 -217 2226 129 3 0 chr6 33290124 33290433 -149124809 - AluSq SINE Alu 0 313 4 985 196 63 58 chr6 33290465 33290536 -149124706 - Charlie4a DNA MER1_type -1456 505 436 1866 155 0 20 chr6 33290536 33290839 -149124403 - AluJb SINE Alu -15 297 1 985 196 63 58 chr6 33290839 33291018 -149124224 - Charlie4a DNA MER1_type -1525 436 259 2545 75 3 0 chr6 33291018 33291324 -149123918 - AluSp SINE Alu -6 307 1 985 196 63 58 chr6 33291324 33291499 -149123743 - Charlie4a DNA MER1_type -1702 259 24 482 207 0 9 chr6 33291669 33291785 -149123457 + Charlie4a DNA MER1_type 70 184 -324 212 270 16 32 chr6 33292013 33292076 -149123166 - L2 LINE L2 -42 3230 3169 429 270 0 26 chr6 33292401 33292516 -149122726 - MIR SINE MIR -91 171 60 495 291 113 19 chr6 33292993 33293206 -149122036 + MIR SINE MIR 20 252 -10 191 270 139 29 chr6 33294017 33294154 -149121088 - MIR SINE MIR -1 261 110 285 297 76 17 chr6 33294324 33294442 -149120800 + L2 LINE L2 3186 3310 -3 1249 177 47 86 chr6 33294676 33294855 -149120387 - Charlie4a DNA MER1_type -1460 501 317 2392 78 24 0 chr6 33294855 33295150 -149120092 - AluSq SINE Alu -11 302 1 1249 177 47 86 chr6 33295150 33295214 -149120028 - Charlie4a DNA MER1_type -1644 317 252 2105 102 36 0 chr6 33295214 33295520 -149119722 - AluSq SINE Alu 0 316 1 1249 177 47 86 chr6 33295520 33295658 -149119584 - Charlie4a DNA MER1_type -1709 252 133 2109 110 0 0 chr6 33295724 33295997 -149119245 - AluSg SINE Alu -36 274 2 379 236 91 0 chr6 33295998 33296108 -149119134 - Charlie4a DNA MER1_type -372 136 17 193 314 29 14 chr6 33296980 33297050 -149118192 + L3b LINE CR1 1511 1581 -2 2295 85 0 3 chr6 33297936 33298272 -149116970 + AluSg SINE Alu 1 335 0 2168 112 0 0 chr6 33299741 33300193 -149115049 + AluSq SINE Alu 1 452 0 403 230 30 0 chr6 33300474 33300574 -149114668 + MER94 DNA DNA 13 115 -19 2392 93 0 7 chr6 33300800 33301102 -149114140 + AluSc SINE Alu 1 300 -9 266 266 0 0 chr6 33301561 33301625 -149113617 + L2 LINE L2 3208 3271 -1 207 0 0 0 chr6 33302032 33302055 -149113187 + (TG)n Simple_repeat Simple_repeat 2 24 0 2557 78 0 0 chr6 33302185 33302494 -149112748 + AluSg SINE Alu 1 309 -1 185 229 229 17 chr6 33303370 33303488 -149111754 - MIR SINE MIR -34 228 86 257 342 120 13 chr6 33303552 33303699 -149111543 + MIR3 SINE MIR 32 198 -10 189 0 0 0 chr6 33303699 33303720 -149111522 + (CA)n Simple_repeat Simple_repeat 2 22 0 2315 186 43 50 chr6 33303749 33303840 -149111402 + Tigger7 DNA MER2_type 2 92 -2495 2139 122 0 14 chr6 33303840 33304135 -149111107 + AluSx SINE Alu 1 291 -21 2315 186 43 50 chr6 33304135 33304722 -149110520 + Tigger7 DNA MER2_type 92 682 -1905 1672 130 24 4 chr6 33304722 33304968 -149110274 + AluSx SINE Alu 51 301 -11 2315 186 43 50 chr6 33304968 33305020 -149110222 + Tigger7 DNA MER2_type 682 2587 0 214 151 57 0 chr6 33305380 33305433 -149109809 + CT-rich Low_complexity Low_complexity 5 60 0 2160 75 21 0 chr6 33305530 33305840 -149109402 + AluSp SINE Alu 1 316 0 32 0 0 0 chr6 33307067 33307099 -149108143 + GC_rich Low_complexity Low_complexity 1 32 0 2501 90 0 0 chr6 33307326 33307636 -149107606 + AluSq SINE Alu 3 312 -1 1300 133 6 0 chr6 33307688 33307869 -149107373 + AluSx SINE Alu 1 182 -130 1738 190 0 7 chr6 33307952 33308247 -149106995 + AluJo SINE Alu 12 304 -8 1899 87 111 35 chr6 33308298 33308586 -149106656 - AluSg SINE Alu 0 310 1 1141 59 13 0 chr6 33308610 33308763 -149106479 - L1PA4 LINE L1 0 6155 6001 2534 84 3 0 chr6 33308811 33309121 -149106121 - AluSp SINE Alu -2 311 1 2308 117 0 3 chr6 33309182 33309490 -149105752 - AluSx SINE Alu -5 307 1 1574 266 93 78 chr6 33309604 33310402 -149104840 + HERVL40 LTR ERVL 415 1224 -4306 1048 220 116 67 chr6 33310456 33310536 -149104706 + MLT1E3 LTR MaLR 1 76 -548 1907 152 42 121 chr6 33310536 33310990 -149104252 - MER47B DNA MER2_type 0 418 1 1048 220 116 67 chr6 33310990 33311281 -149103961 + MLT1E3 LTR MaLR 76 390 -234 2278 95 3 0 chr6 33312196 33312480 -149102762 + AluSp SINE Alu 1 285 -28 225 0 0 0 chr6 33312480 33312505 -149102737 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1977 196 82 14 chr6 33312505 33313006 -149102236 - L1MC3 LINE L1 -24 7761 7227 906 187 29 85 chr6 33313477 33313587 -149101655 - L1MC3 LINE L1 0 7785 7670 2204 106 10 0 chr6 33313587 33313880 -149101362 - AluSx SINE Alu -16 296 1 906 187 29 85 chr6 33313880 33313978 -149101264 - L1MC3 LINE L1 -115 7670 7598 2019 161 0 0 chr6 33313978 33314270 -149100972 - AluSx SINE Alu -20 292 1 906 187 29 85 chr6 33314270 33314376 -149100866 - L1MC3 LINE L1 -187 7598 7488 1223 197 32 81 chr6 33314393 33314809 -149100433 - MSTB1 LTR MaLR 0 432 51 1862 117 4 0 chr6 33314821 33315068 -149100174 + AluSp SINE Alu 64 311 -2 1527 91 0 5 chr6 33315421 33315619 -149099623 + AluSg/x SINE Alu 82 278 -32 2269 74 40 0 chr6 33315789 33316088 -149099154 - AluY SINE Alu 0 311 1 2370 53 0 3 chr6 33316107 33316392 -149098850 - AluY SINE Alu -27 284 1 2202 86 7 17 chr6 33316392 33316683 -149098559 - AluSp SINE Alu -25 288 1 298 315 47 51 chr6 33316767 33317021 -149098221 - L1M4 LINE L1 -1315 4831 4579 2157 158 14 0 chr6 33317077 33317424 -149097818 + L1PB1 LINE L1 5800 6151 0 2189 136 3 0 chr6 33317427 33317735 -149097507 - AluSx SINE Alu -3 309 1 2232 113 10 3 chr6 33317955 33318266 -149096976 - AluSq SINE Alu 0 313 1 2387 110 0 0 chr6 33318313 33318623 -149096619 - AluSg SINE Alu 0 310 1 465 71 0 60 chr6 33318623 33318698 -149096544 - AluSp/q SINE Alu -7 306 235 1372 166 8 11 chr6 33318700 33318965 -149096277 - LTR2B LTR ERV1 0 490 227 2505 70 0 13 chr6 33318966 33319280 -149095962 - AluY SINE Alu -1 310 1 2521 209 12 39 chr6 33319280 33319784 -149095458 - L1PA15-16 LINE L1 -4355 1848 1369 2575 63 0 0 chr6 33319784 33320087 -149095155 - AluY SINE Alu -8 303 1 2521 209 12 39 chr6 33320087 33320325 -149094917 - L1PA15-16 LINE L1 -4834 1369 1126 1218 295 44 23 chr6 33320402 33321205 -149094037 - L1PA15-16 LINE L1 -5173 1031 356 2576 68 0 10 chr6 33321305 33321614 -149093628 - AluSp SINE Alu -7 306 1 571 344 16 28 chr6 33321639 33321959 -149093283 - L1PA15-16 LINE L1 -5836 368 53 428 353 98 24 chr6 33321949 33322566 -149092676 - L1M2b LINE L1 -6333 876 273 * 2396 170 49 0 chr6 33322668 33323074 -149092168 + MSTB LTR MaLR 1 426 0 2372 84 6 28 chr6 33323183 33323503 -149091739 - AluSp SINE Alu 0 313 1 2182 88 67 0 chr6 33323837 33324120 -149091122 - AluSq SINE Alu -11 302 1 834 258 71 19 chr6 33324120 33324388 -149090854 - L1ME1 LINE L1 -63 6103 5822 243 61 0 0 chr6 33324388 33324421 -149090821 + (TA)n Simple_repeat Simple_repeat 1 33 0 2439 89 3 0 chr6 33324421 33324724 -149090518 - AluSp SINE Alu -9 304 1 533 142 9 75 chr6 33324726 33324832 -149090410 - AluJo/FLAM SINE Alu -179 133 35 2067 122 30 23 chr6 33324855 33325158 -149090084 - AluSq SINE Alu -8 305 1 1761 229 69 21 chr6 33325163 33325533 -149089709 - L1MC3 LINE L1 -743 5472 5121 1634 184 57 0 chr6 33325533 33325703 -149089539 - AluJb SINE Alu -9 303 109 252 0 0 0 chr6 33325703 33325731 -149089511 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1634 184 57 0 chr6 33325731 33325843 -149089399 - AluJb SINE Alu -203 109 5 1761 229 69 21 chr6 33325843 33326314 -149088928 - L1MC3 LINE L1 -1094 5121 4995 2038 120 4 0 chr6 33326314 33326589 -149088653 - AluSx SINE Alu -1 311 36 1761 229 69 21 chr6 33326589 33326796 -149088446 - L1MC3 LINE L1 -1220 4995 4799 1037 220 63 16 chr6 33326797 33327161 -149088081 - L1MC3 LINE L1 -3168 3047 2667 693 309 22 53 chr6 33327158 33327176 -149088066 - L1MC3 LINE L1 -4554 1842 1825 * 2464 76 3 13 chr6 33327176 33327492 -149087750 + AluSp SINE Alu 1 313 0 693 309 22 53 chr6 33327492 33327884 -149087358 - L1MC3 LINE L1 -4571 1825 1445 201 74 0 0 chr6 33328053 33328080 -149087162 + (CA)n Simple_repeat Simple_repeat 2 28 0 2024 90 0 50 chr6 33329372 33329650 -149085592 + AluSg SINE Alu 34 297 -13 552 68 0 0 chr6 33329756 33329829 -149085413 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 234 212 106 59 chr6 33329917 33330002 -149085240 - L2 LINE L2 -1 3271 3183 1940 165 41 11 chr6 33332975 33333295 -149081947 + MLT2C1 LTR ERVL 24 358 -39 393 22 0 0 chr6 33333295 33333341 -149081901 + (CA)n Simple_repeat Simple_repeat 2 47 0 1940 165 41 11 chr6 33333341 33333383 -149081859 + MLT2C1 LTR ERVL 358 397 0 916 234 109 13 chr6 33334854 33335196 -149080046 + LTR43 LTR ERV1 177 459 -53 26 30 0 0 chr6 33336009 33336042 -149079200 + AT_rich Low_complexity Low_complexity 1 33 0 2884 318 59 23 chr6 33336917 33338948 -149076294 + ERVL LTR ERVL 873 3043 -1953 687 296 42 0 chr6 33339037 33339344 -149075898 + ERVL LTR ERVL 3162 3481 -2173 * 1406 331 42 49 chr6 33339342 33340561 -149074681 + ERVL LTR ERVL 3688 5260 -504 545 332 80 8 chr6 33340569 33340943 -149074299 + LTR16B LTR ERVL 62 462 -2 441 167 0 0 chr6 33341055 33341133 -149074109 + MLT1F LTR MaLR 463 540 -2 252 116 23 0 chr6 33341483 33341526 -149073716 - MADE1 DNA Mariner -2 78 35 2034 208 80 15 chr6 33342563 33343091 -149072151 + MLT1F1 LTR MaLR 6 567 0 1620 189 0 11 chr6 33343167 33343452 -149071790 - AluJb SINE Alu -22 290 9 23 0 0 0 chr6 33343463 33343486 -149071756 + AT_rich Low_complexity Low_complexity 1 23 0 5603 97 30 73 chr6 33343624 33343661 -149071581 + SVA Other Other 21 58 -1356 1220 0 0 53 chr6 33343661 33343851 -149071391 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5603 97 30 73 chr6 33343851 33346221 -149069021 + SVA Other Other 58 1414 0 1923 236 82 17 chr6 33346232 33346767 -149068475 + MLT1E3 LTR MaLR 3 572 -52 1121 223 19 52 chr6 33346777 33347086 -149068156 + AluJo SINE Alu 11 309 -3 326 129 32 0 chr6 33347086 33347148 -149068094 + MLT1E3 LTR MaLR 561 624 0 223 328 30 0 chr6 33347388 33347455 -149067787 - L2 LINE L2 -560 2754 2686 2526 46 30 0 chr6 33348159 33348461 -149066781 + AluY SINE Alu 1 311 0 198 171 0 0 chr6 33348593 33348634 -149066608 + GA-rich Low_complexity Low_complexity 2 42 0 1257 77 0 0 chr6 33348634 33348804 -149066438 + (GAA)n Simple_repeat Simple_repeat 2 171 0 216 0 0 0 chr6 33349050 33349074 -149066168 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 27 49 0 0 chr6 33352379 33352420 -149062822 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr6 33352457 33352481 -149062761 + (TG)n Simple_repeat Simple_repeat 1 24 0 614 328 94 27 chr6 33353069 33353472 -149061770 - L1MC5 LINE L1 -178 7783 7354 849 203 28 46 chr6 33353891 33354108 -149061134 + MER20 DNA MER1_type 7 219 0 26 50 0 0 chr6 33355108 33355148 -149060094 + AT_rich Low_complexity Low_complexity 1 40 0 3136 194 35 16 chr6 33355287 33355810 -149059432 + L1MB3 LINE L1 4903 5414 -769 3136 181 41 1 chr6 33355810 33356467 -149058775 + L1MB3 LINE L1 5493 6175 -8 3136 194 35 16 chr6 33356467 33356509 -149058733 + L1MB3 LINE L1 5414 6175 -8 452 293 104 39 chr6 33356509 33357086 -149058156 + L2 LINE L2 2564 3178 -135 2339 177 102 14 chr6 33357086 33357113 -149058129 - MLT2B3 LTR ERVL -8 546 523 563 27 0 14 chr6 33357113 33357187 -149058055 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2339 177 102 14 chr6 33357187 33357661 -149057581 - MLT2B3 LTR ERVL -31 523 1 246 297 126 0 chr6 33357669 33357780 -149057462 + L2 LINE L2 3189 3313 0 1712 193 0 13 chr6 33357874 33358174 -149057068 - AluJb SINE Alu -16 296 1 2051 114 3 10 chr6 33358362 33358652 -149056590 - AluSx SINE Alu -24 288 1 304 315 35 42 chr6 33358653 33358796 -149056446 + L1ME4a LINE L1 5815 5956 -165 2058 158 0 3 chr6 33358811 33359121 -149056121 + AluSx SINE Alu 1 309 -3 998 161 0 0 chr6 33359390 33359533 -149055709 + FAM SINE Alu 14 156 -29 26 50 0 0 chr6 33359765 33359805 -149055437 + AT_rich Low_complexity Low_complexity 1 40 0 1854 197 23 32 chr6 33360546 33360982 -149054260 - L1MB5 LINE L1 0 6174 5743 240 86 0 0 chr6 33361087 33361122 -149054120 + (CA)n Simple_repeat Simple_repeat 1 35 0 365 314 8 34 chr6 33361176 33361294 -149053948 + L1MC4 LINE L1 6589 6703 -1339 2318 224 31 23 chr6 33361300 33361953 -149053289 - L1M4c LINE L1 -4730 1654 997 628 264 45 27 chr6 33362402 33362622 -149052620 - L1ME3A LINE L1 -15 6155 5932 526 243 77 12 chr6 33362696 33362894 -149052348 - L1ME3A LINE L1 -379 5791 5586 635 235 56 71 chr6 33362903 33363281 -149051961 + L1MC5 LINE L1 7081 7452 -509 1754 202 104 13 chr6 33364885 33365356 -149049886 + L1MB2 LINE L1 5657 6170 -1 181 273 78 0 chr6 33365484 33365561 -149049681 + MER5A DNA MER1_type 22 104 -85 863 310 125 14 chr6 33365609 33366248 -149048994 + HAL1 LINE L1 1798 2507 0 478 282 141 0 chr6 33367462 33367632 -149047610 - MIR SINE MIR -39 223 30 1763 203 30 11 chr6 33372314 33372891 -149042351 + L1M3 LINE L1 4899 5490 -693 297 0 0 0 chr6 33372891 33372924 -149042318 + (CA)n Simple_repeat Simple_repeat 2 34 0 1763 203 30 11 chr6 33372924 33373053 -149042189 + L1M3 LINE L1 5490 5615 -568 2247 123 3 0 chr6 33373053 33373362 -149041880 + AluY SINE Alu 1 310 -1 188 35 35 0 chr6 33374535 33374564 -149040678 + (GGAGA)n Simple_repeat Simple_repeat 2 31 0 772 59 0 0 chr6 33376276 33376377 -149038865 + HY3 scRNA scRNA 1 101 0 287 269 13 0 chr6 33376384 33376462 -149038780 + L1MB7 LINE L1 6048 6126 -58 248 246 0 0 chr6 33377109 33377166 -149038076 + L1MB7 LINE L1 6111 6167 -17 668 223 29 11 chr6 33377251 33377426 -149037816 + MER5B DNA MER1_type 1 178 0 189 0 0 0 chr6 33377493 33377514 -149037728 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 659 228 13 20 chr6 33377514 33377663 -149037579 - FRAM SINE Alu -18 148 1 225 268 0 18 chr6 33379299 33379355 -149035887 + GA-rich Low_complexity Low_complexity 1 55 0 451 238 0 86 chr6 33379618 33379769 -149035473 - L1ME1 LINE L1 -4 6162 6025 2255 48 15 105 chr6 33379964 33380298 -149034944 - AluY SINE Alu -7 304 1 2489 81 0 3 chr6 33380299 33380609 -149034633 - AluSq SINE Alu 0 313 5 756 197 34 28 chr6 33380708 33380886 -149034356 + FRAM SINE Alu 1 176 0 477 115 0 0 chr6 33382111 33382189 -149033053 + (TG)n Simple_repeat Simple_repeat 1 78 0 250 336 97 35 chr6 33383216 33383588 -149031654 + L2 LINE L2 2499 2893 -421 612 211 0 8 chr6 33385951 33386074 -149029168 + FLAM_C SINE Alu 3 124 -19 949 329 30 16 chr6 33386191 33386619 -149028623 - LTR33 LTR ERVL -65 456 23 2327 123 0 0 chr6 33386733 33387035 -149028207 + AluSx SINE Alu 1 302 -10 1549 176 108 3 chr6 33389916 33390257 -149024985 + Tigger1 DNA MER2_type 2042 2418 0 1472 267 103 14 chr6 33391477 33392099 -149023143 + L2 LINE L2 18 694 -2620 1700 253 106 5 chr6 33392106 33392677 -149022565 + MLT1E2 LTR MaLR 1 626 0 395 265 90 0 chr6 33392678 33392867 -149022375 + L2 LINE L2 698 903 -2411 1714 293 57 24 chr6 33392976 33393717 -149021525 + L2 LINE L2 892 1656 -1658 842 325 81 11 chr6 33393717 33394151 -149021091 + LTR16B LTR ERVL 1 464 0 2223 327 49 22 chr6 33394835 33396939 -149018303 + HERV16 LTR ERVL 853 2958 -2038 655 374 56 26 chr6 33397389 33398460 -149016782 + HERV16 LTR ERVL 4103 5205 -280 699 295 52 22 chr6 33398481 33398847 -149016395 + LTR16B LTR ERVL 62 438 -26 451 162 0 0 chr6 33398971 33399045 -149016197 + MLT1F1 LTR MaLR 491 564 -3 287 316 11 0 chr6 33399155 33399250 -149015992 + T-rich Low_complexity Low_complexity 2 97 0 189 159 48 16 chr6 33399251 33399314 -149015928 + CT-rich Low_complexity Low_complexity 2 66 0 2308 78 10 14 chr6 33399500 33399796 -149015446 + AluY SINE Alu 1 295 -16 523 297 143 23 chr6 33399882 33400273 -149014969 + L1ME3A LINE L1 5528 5965 -205 397 157 0 0 chr6 33401165 33401235 -149014007 - MER41B LTR ERV1 -86 549 480 6516 91 16 0 chr6 33401578 33403091 -149012151 + L1PA10 LINE L1 4619 6168 0 1922 221 99 27 chr6 33403175 33403268 -149011974 + MLT1F1 LTR MaLR 15 100 -467 2050 142 34 47 chr6 33403268 33403648 -149011594 + THE1C LTR MaLR 1 375 0 1922 221 99 27 chr6 33403648 33404070 -149011172 + MLT1F1 LTR MaLR 100 567 0 1329 216 3 21 chr6 33404143 33404434 -149010808 - AluJb SINE Alu -25 287 2 1708 225 70 50 chr6 33404598 33405132 -149010110 + MLT1E3 LTR MaLR 3 431 -74 1224 227 38 34 chr6 33405132 33405423 -149009819 + AluJo SINE Alu 1 292 -20 1708 225 70 50 chr6 33405423 33405500 -149009742 + MLT1E3 LTR MaLR 431 505 0 42086 56 15 1 chr6 33405670 33411713 -149003529 + L1PA6 LINE L1 22 6148 -6 342 93 19 0 chr6 33412401 33412455 -149002787 - MER41B LTR ERV1 -88 547 493 6082 101 19 7 chr6 33412822 33414354 -149000888 + L1PA10 LINE L1 4624 6166 -2 1938 247 47 27 chr6 33414432 33414531 -149000711 + MLT1F1 LTR MaLR 6 102 -465 2159 154 5 24 chr6 33414531 33414913 -149000329 + THE1C LTR MaLR 1 375 0 1938 247 47 27 chr6 33414913 33415364 -148999878 + MLT1F1 LTR MaLR 102 567 0 1578 183 3 14 chr6 33415416 33415730 -148999512 - AluJb SINE Alu 0 311 1 1868 244 88 21 chr6 33415903 33416428 -148998814 + MLT1E3 LTR MaLR 14 573 -51 204 157 0 39 chr6 33418774 33418825 -148996417 + G-rich Low_complexity Low_complexity 5 53 0 350 354 42 29 chr6 33419137 33419592 -148995650 + ERVL LTR ERVL 4518 4978 -786 864 304 39 13 chr6 33419848 33420230 -148995012 + LTR16B LTR ERVL 69 460 -4 361 218 0 0 chr6 33420342 33420420 -148994822 + MLT1F1 LTR MaLR 488 565 -2 204 125 0 0 chr6 33420560 33420592 -148994650 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 330 331 116 3 chr6 33420847 33421131 -148994111 + L1ME3A LINE L1 5554 5869 -301 1049 73 13 0 chr6 33421399 33421550 -148993692 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 2198 113 0 0 chr6 33421552 33421835 -148993407 - AluSq SINE Alu -30 283 1 2140 229 51 22 chr6 33422941 33423487 -148991755 + MLT1F1 LTR MaLR 6 567 0 22 0 0 0 chr6 33423565 33423587 -148991655 + AT_rich Low_complexity Low_complexity 1 22 0 2217 241 68 19 chr6 33423690 33424278 -148990964 + MLT1E3 LTR MaLR 6 622 -2 408 264 16 8 chr6 33424437 33424562 -148990680 - L2 LINE L2 0 3313 3188 290 312 43 22 chr6 33424570 33424708 -148990534 - L2 LINE L2 -549 2765 2625 2507 42 3 22 chr6 33424977 33425288 -148989954 + AluY SINE Alu 1 305 -6 1694 168 0 32 chr6 33425358 33425673 -148989569 + AluJo SINE Alu 1 305 -7 228 234 0 0 chr6 33427731 33427778 -148987464 + L1MA10 LINE L1 6185 6231 -103 2096 164 36 8 chr6 33428542 33428902 -148986340 + MSTA LTR MaLR 1 370 -58 28 0 0 0 chr6 33428931 33428959 -148986283 + AT_rich Low_complexity Low_complexity 1 28 0 479 113 0 0 chr6 33429811 33429882 -148985360 + MSTA LTR MaLR 358 428 0 2864 164 8 0 chr6 33429882 33430357 -148984885 + MSTB1-int LTR MaLR 1 479 -1172 2248 240 33 28 chr6 33430366 33430937 -148984305 + MSTB1-int LTR MaLR 1078 1651 0 1841 206 66 7 chr6 33430937 33431345 -148983897 + MSTB1 LTR MaLR 1 432 0 479 288 75 12 chr6 33431345 33431505 -148983737 - MER21B LTR ERV1 -675 188 19 3679 259 53 42 chr6 33431611 33432516 -148982726 - MER21B-int LTR ERV1 -58 4133 3209 2284 109 3 0 chr6 33432516 33432818 -148982424 - AluSx SINE Alu -9 303 1 3679 259 53 42 chr6 33432818 33433164 -148982078 - MER21B-int LTR ERV1 -982 3209 2868 4833 241 121 26 chr6 33433165 33435082 -148980160 + L1M4 LINE L1 3251 5348 -798 570 267 11 6 chr6 33435063 33435239 -148980003 + L1MC/D LINE L1 4842 5018 -1128 * 591 177 0 0 chr6 33435266 33435362 -148979880 + FLAM_A SINE Alu 1 96 -46 2061 203 68 26 chr6 33435375 33436107 -148979135 + L1MC/D LINE L1 4992 5765 -594 863 216 188 4 chr6 33436133 33436472 -148978770 - Charlie1 DNA MER1_type -1018 1743 38 584 274 9 50 chr6 33436677 33436896 -148978346 + L1PB4 LINE L1 5946 6155 -1 240 170 0 0 chr6 33436950 33437003 -148978239 + (TG)n Simple_repeat Simple_repeat 2 54 0 25 65 0 0 chr6 33438142 33438188 -148977054 + AT_rich Low_complexity Low_complexity 1 46 0 324 291 143 16 chr6 33438188 33438370 -148976872 - MIR SINE MIR -39 223 19 1495 345 33 32 chr6 33441721 33442788 -148972454 + ERVL LTR ERVL 2310 3096 -1900 928 318 65 42 chr6 33442899 33443783 -148971459 + ERVL LTR ERVL 3710 4956 -808 697 304 49 23 chr6 33444097 33444485 -148970757 + LTR16B LTR ERVL 62 459 -5 381 164 14 0 chr6 33444603 33444676 -148970566 + MLT1F1 LTR MaLR 491 564 -3 282 247 0 43 chr6 33444820 33445006 -148970236 + CT-rich Low_complexity Low_complexity 3 180 0 904 106 0 0 chr6 33445270 33445383 -148969859 + AluSx SINE Alu 1 113 -200 504 164 135 10 chr6 33445392 33445496 -148969746 - LTR3b LTR ERVK -5 432 316 * 1061 53 8 0 chr6 33445495 33445627 -148969615 - LTR3b LTR ERVK -365 135 3 1336 113 6 0 chr6 33445628 33445843 -148969399 + AluSx SINE Alu 107 322 0 383 290 140 27 chr6 33445843 33446136 -148969106 + L1ME3A LINE L1 5547 5872 -298 520 108 0 0 chr6 33446283 33446366 -148968876 + L1 LINE L1 4762 4844 -1302 292 67 100 17 chr6 33447338 33447398 -148967844 - MER41A LTR ERV1 -88 466 402 6312 95 9 9 chr6 33447752 33449276 -148965966 + L1PA10 LINE L1 4619 6144 -24 252 0 0 0 chr6 33449276 33449304 -148965938 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6312 95 9 9 chr6 33449304 33449330 -148965912 + L1PA10 LINE L1 6143 6168 0 401 262 39 0 chr6 33449387 33449486 -148965756 + MLT1F1 LTR MaLR 6 108 -459 632 161 31 62 chr6 33449486 33449616 -148965626 + THE1C LTR MaLR 1 126 -249 1814 96 12 0 chr6 33449634 33449885 -148965357 - L1PA10 LINE L1 -136 6032 5779 1409 109 5 19 chr6 33449885 33450096 -148965146 + THE1C LTR MaLR 168 375 0 1943 214 42 20 chr6 33450097 33450550 -148964692 + MLT1F1 LTR MaLR 105 567 0 1547 171 14 11 chr6 33450622 33450908 -148964334 - AluJb SINE Alu -25 287 1 1855 217 66 57 chr6 33451081 33451604 -148963638 + MLT1E3 LTR MaLR 14 577 -77 1251 197 45 35 chr6 33451604 33451893 -148963349 + AluJo SINE Alu 1 292 -20 1855 217 66 57 chr6 33451893 33451972 -148963270 + MLT1E3 LTR MaLR 577 654 0 209 283 206 22 chr6 33452200 33452380 -148962862 - L2 LINE L2 -549 2765 2553 22 0 0 0 chr6 33453744 33453766 -148961476 + GC_rich Low_complexity Low_complexity 1 22 0 2124 109 23 3 chr6 33457217 33457520 -148957722 - AluSc SINE Alu 0 309 1 215 330 70 17 chr6 33457984 33458099 -148957143 - L2 LINE L2 -2 3311 3191 929 120 44 85 chr6 33458102 33458334 -148956908 - MER30B DNA MER1_type 0 230 1 1249 296 108 9 chr6 33458381 33459085 -148956157 - L2 LINE L2 -166 3147 2381 395 250 109 31 chr6 33459403 33459568 -148955674 + L1MEc LINE L1 2145 2298 -3917 213 39 0 0 chr6 33459568 33459594 -148955648 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 395 250 109 31 chr6 33459594 33459691 -148955551 + L1MEc LINE L1 2298 2386 -3829 850 213 38 0 chr6 33459772 33459932 -148955310 - FRAM SINE Alu -12 164 1 490 210 179 31 chr6 33460444 33460606 -148954636 + MER20 DNA MER1_type 32 217 -2 328 267 180 16 chr6 33460612 33460746 -148954496 - MIR SINE MIR -59 149 14 1610 183 48 94 chr6 33462237 33462544 -148952698 + L1P5 LINE L1 4904 5223 -928 2339 97 0 0 chr6 33462544 33462854 -148952388 + AluSx SINE Alu 1 310 -2 1610 183 48 94 chr6 33462854 33463087 -148952155 + L1P5 LINE L1 5223 5420 -731 3001 182 43 19 chr6 33463087 33463758 -148951484 + L1MB4 LINE L1 5493 6179 -1 1610 183 48 94 chr6 33463758 33463795 -148951447 + L1P5 LINE L1 5420 5457 -694 480 302 94 38 chr6 33463795 33464373 -148950869 + L2 LINE L2 2569 3181 -132 1679 219 135 9 chr6 33464373 33464410 -148950832 - MLT2B3 LTR ERVL -3 551 520 788 38 53 0 chr6 33464410 33464543 -148950699 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 1679 219 135 9 chr6 33464543 33464790 -148950452 - MLT2B3 LTR ERVL -34 520 305 267 104 0 0 chr6 33464790 33464838 -148950404 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1679 219 135 9 chr6 33464838 33464973 -148950269 - MLT2B3 LTR ERVL -249 305 78 1435 174 46 7 chr6 33465006 33465288 -148949954 - AluJb SINE Alu -19 293 1 305 309 134 56 chr6 33465294 33465535 -148949707 + L1ME4a LINE L1 5636 5910 -211 1599 141 8 8 chr6 33465535 33465791 -148949451 + AluSx SINE Alu 35 290 -22 305 309 134 56 chr6 33465791 33465869 -148949373 + L1ME4a LINE L1 5910 5980 -141 797 204 72 0 chr6 33466141 33466293 -148948949 + FAM SINE Alu 1 163 -12 230 93 74 0 chr6 33466518 33466572 -148948670 + (TA)n Simple_repeat Simple_repeat 1 58 0 1796 211 19 24 chr6 33467325 33467751 -148947491 - L1MB5 LINE L1 -8 6166 5743 3693 228 73 74 chr6 33467819 33469381 -148945861 - L1M4c LINE L1 -4659 1987 375 1877 176 0 0 chr6 33469381 33469693 -148945549 - AluJb SINE Alu 0 312 1 3693 228 73 74 chr6 33469693 33469983 -148945259 - L1M4c LINE L1 -6271 375 86 224 231 62 31 chr6 33469985 33470050 -148945192 + MER5A DNA MER1_type 80 157 -32 2146 87 13 0 chr6 33470051 33470350 -148944892 - AluSp SINE Alu -10 303 1 246 331 75 38 chr6 33470511 33470671 -148944571 - L2 LINE L2 -4 3309 3144 447 331 77 23 chr6 33470773 33471125 -148944117 - L1MEc LINE L1 -4612 1834 1398 2006 185 46 73 chr6 33471139 33471702 -148943540 + LTR10A LTR ERV1 1 548 -61 720 258 0 6 chr6 33471842 33472020 -148943222 + MLT1D LTR MaLR 1 177 -328 246 279 74 42 chr6 33472053 33472268 -148942974 - L1M4 LINE L1 -2203 3943 3722 535 261 69 57 chr6 33472299 33472705 -148942537 + L1MC5 LINE L1 7091 7501 -460 2011 208 51 9 chr6 33474443 33474910 -148940332 + L1MB2 LINE L1 5685 6171 0 535 281 72 18 chr6 33475168 33475446 -148939796 + HAL1 LINE L1 1800 2092 -415 38 22 0 0 chr6 33476072 33476117 -148939125 + AT_rich Low_complexity Low_complexity 1 45 0 394 249 30 106 chr6 33476157 33476422 -148938820 + HAL1 LINE L1 2263 2507 0 23 68 0 0 chr6 33477568 33477612 -148937630 + AT_rich Low_complexity Low_complexity 1 44 0 411 290 131 11 chr6 33477612 33477795 -148937447 - MIR SINE MIR -39 223 19 397 279 0 16 chr6 33479518 33479640 -148935602 - L1MC4a LINE L1 -1844 5964 5845 494 285 108 34 chr6 33479844 33480136 -148935106 + L1ME3 LINE L1 5624 5937 -233 1285 232 0 4 chr6 33480140 33480420 -148934822 + AluJb SINE Alu 1 279 -33 207 0 0 0 chr6 33480423 33480446 -148934796 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1861 265 92 11 chr6 33481110 33481807 -148933435 + L1ME2 LINE L1 5411 6163 -1 25 0 0 0 chr6 33481835 33481860 -148933382 + AT_rich Low_complexity Low_complexity 1 25 0 6196 166 26 39 chr6 33481876 33482154 -148933088 + L1MA4A LINE L1 3971 4251 -2052 2364 65 0 43 chr6 33482154 33482479 -148932763 + AluY SINE Alu 1 311 0 6196 166 26 39 chr6 33482479 33482737 -148932505 + L1MA4A LINE L1 4251 4511 -1792 790 197 0 0 chr6 33482737 33482869 -148932373 + FLAM_C SINE Alu 2 133 0 6196 166 26 39 chr6 33482869 33484534 -148930708 + L1MA4A LINE L1 4511 6137 -166 2301 73 0 32 chr6 33484534 33484848 -148930394 + AluY SINE Alu 1 304 -7 6196 166 26 39 chr6 33484848 33485013 -148930229 + L1MA4A LINE L1 6137 6303 0 227 182 0 109 chr6 33485448 33485503 -148929739 + MLT1B LTR MaLR 1 49 -341 * 1039 163 21 16 chr6 33485494 33485684 -148929558 + MLT1B LTR MaLR 200 390 0 180 327 131 9 chr6 33486180 33486287 -148928955 - MIR SINE MIR -68 140 21 180 0 0 0 chr6 33486833 33486853 -148928389 + (A)n Simple_repeat Simple_repeat 1 20 0 2209 98 0 3 chr6 33488292 33488599 -148926643 + AluSq SINE Alu 1 306 -7 360 315 163 0 chr6 33488630 33488814 -148926428 - MIR SINE MIR -27 235 22 191 367 0 51 chr6 33490142 33490221 -148925021 - MIR SINE MIR -165 97 23 1990 155 81 3 chr6 33490252 33490600 -148924642 + Tigger1 DNA MER2_type 2043 2417 -1 1606 275 104 8 chr6 33491787 33492409 -148922833 + L2 LINE L2 18 699 -2615 1871 243 87 19 chr6 33492411 33492987 -148922255 + MLT1E2 LTR MaLR 1 615 -11 1975 234 47 123 chr6 33493018 33494033 -148921209 + L2 LINE L2 719 1656 -1658 767 311 80 20 chr6 33494033 33494471 -148920771 + LTR16B LTR ERVL 1 464 0 296 374 65 28 chr6 33494473 33495046 -148920196 + ERVL LTR ERVL 3 596 -4400 581 339 41 22 chr6 33495152 33495471 -148919771 + ERVL LTR ERVL 853 1177 -3819 281 339 48 18 chr6 33495496 33495723 -148919519 + ERVL LTR ERVL 1302 1535 -4119 3045 314 36 42 chr6 33495833 33497007 -148918235 + ERVL LTR ERVL 1666 2832 -2164 2094 113 3 0 chr6 33497007 33497300 -148917942 + AluSp SINE Alu 1 294 -19 3045 314 36 42 chr6 33497300 33497564 -148917678 + ERVL LTR ERVL 2832 3096 -1900 561 324 90 6 chr6 33497599 33497911 -148917331 + ERVL LTR ERVL 3187 3524 -2240 1044 345 46 36 chr6 33497955 33499107 -148916135 + ERVL LTR ERVL 3739 5245 -519 528 324 54 16 chr6 33499137 33499510 -148915732 + LTR16B LTR ERVL 73 459 -5 375 130 32 2 chr6 33499629 33499701 -148915541 + MLT1F LTR MaLR 476 539 -3 304 291 0 29 chr6 33499811 33499854 -148915388 + CT-rich Low_complexity Low_complexity 1 44 -56 2350 103 0 3 chr6 33499854 33500155 -148915087 - AluY SINE Alu -11 300 1 304 291 0 29 chr6 33500155 33500214 -148915028 + CT-rich Low_complexity Low_complexity 44 100 0 263 204 46 9 chr6 33500227 33500335 -148914907 + CT-rich Low_complexity Low_complexity 3 114 0 256 275 140 31 chr6 33500568 33500951 -148914291 + L1ME3A LINE L1 5528 5951 -219 3648 127 0 4 chr6 33501048 33501560 -148913682 - MER9 LTR ERVK 0 511 2 6459 88 13 8 chr6 33502404 33503403 -148911839 + L1PA10 LINE L1 5164 6163 -5 2039 215 43 27 chr6 33503509 33503608 -148911634 + MLT1F1 LTR MaLR 6 102 -465 2356 136 5 24 chr6 33503608 33503990 -148911252 + THE1C LTR MaLR 1 375 0 2039 215 43 27 chr6 33503990 33504443 -148910799 + MLT1F1 LTR MaLR 102 567 0 1472 218 25 0 chr6 33504510 33504795 -148910447 - AluJb SINE Alu -19 293 2 1666 223 88 47 chr6 33504959 33505245 -148909997 + MLT1E3 LTR MaLR 3 276 -348 2234 100 0 40 chr6 33505245 33505566 -148909676 + AluYa5 SINE Alu 1 308 -3 1666 223 88 47 chr6 33505566 33505827 -148909415 + MLT1E3 LTR MaLR 276 572 -52 182 265 0 0 chr6 33505963 33506012 -148909230 - L2 LINE L2 0 3313 3265 207 260 40 0 chr6 33506060 33506110 -148909132 - L2 LINE L2 -553 2761 2710 195 100 0 0 chr6 33506941 33506971 -148908271 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr6 33507605 33507627 -148907615 + GC_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr6 33511407 33511432 -148903810 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 190 341 93 23 chr6 33511439 33511568 -148903674 + L3 LINE CR1 888 1025 -552 187 330 70 17 chr6 33511581 33511696 -148903546 - L2 LINE L2 -2 3311 3191 353 193 0 0 chr6 33511701 33511758 -148903484 - MER30 DNA MER1_type -2 228 172 1567 337 48 34 chr6 33512148 33513196 -148902046 + HERV16 LTR ERVL 2035 3096 -1900 518 176 20 0 chr6 33513282 33513384 -148901858 + AluSp/q SINE Alu 201 304 -9 210 37 0 0 chr6 33513664 33513691 -148901551 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2062 116 4 0 chr6 33513692 33513968 -148901274 - AluSq SINE Alu -36 277 1 2143 143 0 0 chr6 33514115 33514423 -148900819 + AluSg SINE Alu 1 308 -2 186 43 0 0 chr6 33515079 33515102 -148900140 + (T)n Simple_repeat Simple_repeat 1 23 0 7240 84 54 4 chr6 33515102 33516078 -148899164 - SVA Other Other -216 1170 146 942 148 0 0 chr6 33517748 33517903 -148897339 + MSTA LTR MaLR 1 155 -273 888 228 0 0 chr6 33517904 33518097 -148897145 + MSTB1-int LTR MaLR 287 479 -1172 1951 237 27 36 chr6 33518107 33518669 -148896573 + MSTB1-int LTR MaLR 1078 1634 -17 1685 212 66 15 chr6 33518685 33519096 -148896146 + MSTB1 LTR MaLR 1 432 0 490 268 78 14 chr6 33519115 33519257 -148895985 - MER21B LTR ERV1 -694 169 19 1817 239 21 24 chr6 33519356 33519867 -148895375 - MER21B-int LTR ERV1 -50 4141 3632 1618 268 30 45 chr6 33520006 33520580 -148894662 - MER21B-int LTR ERV1 -747 3444 2880 4076 242 120 46 chr6 33520586 33521902 -148893340 + L1M4 LINE L1 3242 4750 -1396 2322 71 51 0 chr6 33521902 33522196 -148893046 + AluY SINE Alu 1 309 -2 4076 242 120 46 chr6 33522196 33522824 -148892418 + L1M4 LINE L1 4750 5330 -816 540 233 9 84 chr6 33522825 33523040 -148892202 + L1MC/D LINE L1 4835 5033 -1113 609 182 0 0 chr6 33523046 33523145 -148892097 + FLAM_A SINE Alu 1 99 -43 1831 198 55 57 chr6 33523153 33523918 -148891324 + L1MC/D LINE L1 4993 5763 -596 778 219 233 3 chr6 33523926 33524269 -148890973 - Charlie1 DNA MER1_type -994 1767 40 648 248 22 12 chr6 33524498 33524706 -148890536 + L1PB4 LINE L1 5964 6302 0 186 103 0 0 chr6 33524750 33524779 -148890463 + (TG)n Simple_repeat Simple_repeat 2 30 0 1851 158 80 3 chr6 33528769 33529118 -148886124 + Tigger1 DNA MER2_type 2043 2418 0 2724 267 155 28 chr6 33530336 33530946 -148884296 + L2 LINE L2 18 550 -2764 2005 227 89 20 chr6 33530946 33531532 -148883710 + MLT1E2 LTR MaLR 1 626 0 2724 267 155 28 chr6 33531532 33532376 -148882866 + L2 LINE L2 550 1656 -1658 692 336 61 14 chr6 33532376 33532819 -148882423 + LTR16B LTR ERVL 1 464 0 511 358 39 16 chr6 33533519 33534155 -148881087 + HERV16 LTR ERVL 871 1546 -3450 2883 326 39 33 chr6 33534202 33535958 -148879284 + HERV16 LTR ERVL 1666 3504 -1900 500 354 31 0 chr6 33536132 33536361 -148878881 + HERV16 LTR ERVL 4158 4393 -1092 293 349 48 36 chr6 33536971 33537447 -148877795 + HERV16 LTR ERVL 4779 5260 -504 715 315 42 16 chr6 33537461 33537842 -148877400 + LTR16B LTR ERVL 69 459 -5 389 189 0 0 chr6 33537964 33538038 -148877204 + MLT1F1 LTR MaLR 491 564 -3 343 191 39 39 chr6 33538181 33538359 -148876883 + CT-rich Low_complexity Low_complexity 3 180 0 384 285 131 30 chr6 33538585 33538883 -148876359 + L1ME3A LINE L1 5545 5872 -298 234 170 0 0 chr6 33538962 33539009 -148876233 - LTR66 LTR ERVL -170 440 394 311 243 29 0 chr6 33539009 33539079 -148876163 - L1MC4 LINE L1 -1351 6691 6620 438 77 0 0 chr6 33539970 33540035 -148875207 - MER41A LTR ERV1 -88 466 402 6432 93 9 4 chr6 33540389 33541930 -148873312 + L1PA10 LINE L1 4619 6163 -5 1943 228 40 29 chr6 33542015 33542114 -148873128 + MLT1F1 LTR MaLR 6 102 -465 2168 126 55 25 chr6 33542114 33542478 -148872764 + THE1C LTR MaLR 1 375 0 1943 228 40 29 chr6 33542478 33542934 -148872308 + MLT1F1 LTR MaLR 102 567 0 1647 205 0 3 chr6 33542998 33543295 -148871947 - AluJb SINE Alu -16 296 1 2196 206 79 54 chr6 33543457 33543990 -148871252 + MLT1E3 LTR MaLR 3 554 -70 1418 224 14 10 chr6 33543990 33544285 -148870957 + AluJo SINE Alu 1 296 -16 2196 206 79 54 chr6 33544285 33544358 -148870884 + MLT1E3 LTR MaLR 554 624 0 226 204 0 0 chr6 33544481 33544530 -148870712 - L2 LINE L2 0 3313 3265 214 284 161 0 chr6 33544578 33544659 -148870583 - L2 LINE L2 -553 2761 2668 233 151 0 38 chr6 33546785 33546838 -148868404 + G-rich Low_complexity Low_complexity 3 53 0 3777 184 63 45 chr6 33549631 33550568 -148864674 - LTR13 LTR ERVK 0 954 1 204 40 0 0 chr6 33551034 33551059 -148864183 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 253 304 11 43 chr6 33551103 33551195 -148864047 + L3 LINE CR1 934 1022 -555 200 316 88 26 chr6 33551208 33551322 -148863920 - L2 LINE L2 -2 3311 3191 435 117 0 1 chr6 33551325 33551409 -148863833 - MER30 DNA MER1_type 0 230 140 391 280 89 19 chr6 33551819 33551976 -148863266 + ERVL LTR ERVL 1989 2156 -3608 344 122 0 0 chr6 33552482 33552531 -148862711 + MLT1F LTR MaLR 491 539 -3 290 304 0 36 chr6 33552641 33552693 -148862549 + CT-rich Low_complexity Low_complexity 1 53 -55 2347 87 3 0 chr6 33552693 33553003 -148862239 - AluY SINE Alu 0 311 1 290 304 0 36 chr6 33553003 33553062 -148862180 + CT-rich Low_complexity Low_complexity 53 108 0 231 252 19 9 chr6 33553075 33553182 -148862060 + CT-rich Low_complexity Low_complexity 3 110 0 372 296 162 23 chr6 33553448 33553793 -148861449 + L1ME3A LINE L1 5559 5951 -219 248 235 0 0 chr6 33553813 33553881 -148861361 + L1MC4 LINE L1 6636 6703 -1339 242 278 0 0 chr6 33553837 33553927 -148861315 - L1MC4 LINE L1 -1339 6703 6614 * 3515 119 20 4 chr6 33554000 33554503 -148860739 - MER9 LTR ERVK 0 511 1 6220 83 20 13 chr6 33555334 33556332 -148858910 + L1PA10 LINE L1 5164 6163 -5 2103 226 44 28 chr6 33556420 33556519 -148858723 + MLT1F1 LTR MaLR 6 102 -465 2241 144 5 24 chr6 33556519 33556900 -148858342 + THE1C LTR MaLR 1 374 -1 2103 226 44 28 chr6 33556900 33557345 -148857897 + MLT1F1 LTR MaLR 102 559 -8 1352 218 25 0 chr6 33557422 33557702 -148857540 - AluJo SINE Alu -25 287 1 1900 219 96 46 chr6 33557865 33558151 -148857091 + MLT1E3 LTR MaLR 3 273 -351 2030 96 6 22 chr6 33558151 33558463 -148856779 + AluY SINE Alu 1 307 -4 1900 219 96 46 chr6 33558463 33558720 -148856522 + MLT1E3 LTR MaLR 273 573 -51 184 245 0 0 chr6 33558855 33558904 -148856338 - L2 LINE L2 0 3272 3224 207 300 67 22 chr6 33564386 33564476 -148850766 + L3 LINE CR1 934 1027 -550 205 313 70 17 chr6 33564488 33564603 -148850639 - L2 LINE L2 -2 3311 3191 409 128 0 1 chr6 33564606 33564690 -148850552 - MER30 DNA MER1_type 0 230 140 1818 317 70 50 chr6 33565100 33566585 -148848657 + ERVL LTR ERVL 1951 3465 -2189 803 315 23 23 chr6 33566714 33567060 -148848182 + ERVL LTR ERVL 3838 4160 -836 254 85 0 21 chr6 33567367 33567379 -148847863 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 254 85 0 21 chr6 33567379 33567426 -148847816 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 259 262 28 28 chr6 33567640 33567747 -148847495 + ERVL LTR ERVL 4582 4688 -308 788 323 36 16 chr6 33567853 33568237 -148847005 + LTR16B LTR ERVL 69 460 -4 367 218 0 0 chr6 33568353 33568431 -148846811 + MLT1F1 LTR MaLR 488 565 -2 204 281 18 0 chr6 33568492 33568549 -148846693 + L2 LINE L2 1780 1837 -1477 428 311 140 11 chr6 33568858 33569209 -148846033 + L1ME3A LINE L1 5554 5949 -221 1770 146 18 0 chr6 33569396 33569712 -148845530 - AluSq SINE Alu 0 321 1 44132 28 21 1 chr6 33570275 33576306 -148838936 + L1HS LINE L1 1 6155 0 432 0 0 0 chr6 33576306 33576354 -148838888 + (A)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr6 33576473 33576493 -148838749 + (A)n Simple_repeat Simple_repeat 1 20 0 643 204 0 30 chr6 33577040 33577172 -148838070 + AluJb SINE Alu 159 286 -26 318 26 0 0 chr6 33577172 33577211 -148838031 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 1701 224 40 86 chr6 33577321 33577481 -148837761 + MLT1F1 LTR MaLR 15 181 -386 2065 126 3 0 chr6 33577481 33577783 -148837459 + AluSg SINE Alu 3 305 -5 1701 224 40 86 chr6 33577783 33578202 -148837040 + MLT1F1 LTR MaLR 181 567 0 2229 234 68 19 chr6 33578402 33578995 -148836247 + MLT1E3 LTR MaLR 1 622 -2 464 264 8 8 chr6 33579151 33579276 -148835966 - L2 LINE L2 -1 3312 3188 398 277 162 0 chr6 33579253 33579401 -148835841 - L2 LINE L2 -502 2812 2641 * 1394 170 4 29 chr6 33579777 33580110 -148835132 + AluJb SINE Alu 12 337 0 2268 167 41 7 chr6 33582937 33583351 -148831891 + MSTA LTR MaLR 1 428 0 2575 190 13 0 chr6 33583351 33583824 -148831418 + MSTA-int LTR MaLR 1 479 -1172 2268 239 37 21 chr6 33583833 33584398 -148830844 + MSTA-int LTR MaLR 1078 1651 0 1841 208 64 7 chr6 33584398 33584807 -148830435 + MSTB1 LTR MaLR 1 432 0 554 237 111 7 chr6 33584826 33584961 -148830281 - MER21B LTR ERV1 -694 169 21 4392 254 45 30 chr6 33585061 33586317 -148828925 - MER21B-int LTR ERV1 -50 4141 2868 536 264 14 10 chr6 33586322 33586530 -148828712 + L1M4 LINE L1 3250 3458 -2688 543 314 26 31 chr6 33586530 33586756 -148828486 + Harlequin LTR ERV1 785 1009 -6776 6891 53 10 39 chr6 33586977 33588290 -148826952 + L1PA7 LINE L1 4861 6146 -8 1052 317 32 25 chr6 33588302 33588930 -148826312 + Harlequin LTR ERV1 1401 2032 -5753 392 157 14 0 chr6 33588948 33589018 -148826224 + LTR18B LTR ERVL 332 402 -212 373 188 35 24 chr6 33589064 33589149 -148826093 + LTR18B LTR ERVL 268 353 -261 441 260 274 5 chr6 33589691 33589914 -148825328 - MER102a DNA MER1_type -3 327 45 655 312 71 63 chr6 33590565 33591155 -148824087 + Harlequin LTR ERV1 1371 1955 -5830 2274 84 0 3 chr6 33591155 33591452 -148823790 + AluY SINE Alu 1 296 -15 655 312 71 63 chr6 33591452 33591560 -148823682 + Harlequin LTR ERV1 1955 4914 -2871 363 313 0 8 chr6 33591600 33591731 -148823511 + Harlequin LTR ERV1 4411 4540 -2109 21 0 0 0 chr6 33592057 33592078 -148823164 + AT_rich Low_complexity Low_complexity 1 21 0 593 287 62 81 chr6 33592185 33592798 -148822444 + Harlequin LTR ERV1 3386 5490 -1159 312 344 0 0 chr6 33592859 33592949 -148822293 - L1MC4 LINE L1 -1338 6704 6615 312 341 23 0 chr6 33592872 33592960 -148822282 + L1MC4 LINE L1 6614 6703 -1339 300 53 0 0 chr6 33593015 33593053 -148822189 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1437 317 14 23 chr6 33593054 33593615 -148821627 + Harlequin LTR ERV1 7092 7647 -138 2141 196 32 21 chr6 33596990 33597557 -148817685 + L1MB2 LINE L1 4899 5475 -708 276 30 0 0 chr6 33597557 33597590 -148817652 + (CA)n Simple_repeat Simple_repeat 2 34 0 2141 196 32 21 chr6 33597590 33597846 -148817396 + L1MB2 LINE L1 5475 5727 -456 887 180 170 5 chr6 33597836 33598036 -148817206 + L1MB2 LINE L1 5938 6170 -1 * 426 194 0 0 chr6 33599776 33599848 -148815394 - FRAM/FAM SINE Alu -105 71 1 199 302 12 12 chr6 33600157 33600243 -148814999 - MIR3 SINE MIR -110 98 13 221 260 0 65 chr6 33601690 33601767 -148813475 + GA-rich Low_complexity Low_complexity 1 72 0 353 264 7 76 chr6 33602060 33602204 -148813038 - L1ME1 LINE L1 -6 6160 6027 904 139 52 17 chr6 33602495 33602667 -148812575 + FRAM SINE Alu 1 175 -1 7632 35 0 1 chr6 33603141 33604827 -148810415 + L1PA3 LINE L1 4504 6155 0 510 221 0 0 chr6 33605645 33605817 -148809425 + (TG)n Simple_repeat Simple_repeat 1 172 0 2251 91 0 0 chr6 33606719 33607026 -148808216 - AluSg SINE Alu -3 307 1 811 308 122 25 chr6 33607129 33607849 -148807393 + L2 LINE L2 2513 3307 -6 589 297 158 27 chr6 33607854 33607904 -148807338 + L1ME4a LINE L1 5542 5584 -537 1764 122 0 0 chr6 33607904 33608158 -148807084 + AluSx SINE Alu 47 300 -12 589 297 158 27 chr6 33608158 33608437 -148806805 + L1ME4a LINE L1 5584 5914 -207 1234 205 40 44 chr6 33608753 33609050 -148806192 - AluJo SINE Alu -6 296 1 1428 179 14 10 chr6 33609769 33610059 -148805183 - AluJb SINE Alu -19 293 3 413 279 30 131 chr6 33610342 33610487 -148804755 - L2 LINE L2 0 3272 3179 360 43 0 0 chr6 33610487 33610533 -148804709 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 413 279 30 131 chr6 33610533 33610724 -148804518 - L2 LINE L2 -93 3179 2970 251 256 26 68 chr6 33610893 33611010 -148804232 + MER5A DNA MER1_type 55 166 -23 * 717 142 9 0 chr6 33610936 33611042 -148804200 - MER5A DNA MER1_type -80 109 3 268 329 31 39 chr6 33611981 33612267 -148802975 - L1MC4a LINE L1 -1755 6053 5770 414 286 118 16 chr6 33612398 33612643 -148802599 + L1ME3 LINE L1 5632 5901 -261 1490 188 7 7 chr6 33612686 33612978 -148802264 + AluJb SINE Alu 1 292 -20 1960 252 99 17 chr6 33613642 33614360 -148800882 + L1ME2 LINE L1 5374 6162 -2 1012 207 18 0 chr6 33614406 33614623 -148800619 + L1MA4A LINE L1 3742 3962 -2184 5691 149 26 27 chr6 33614635 33616079 -148799163 + L1MA4A LINE L1 4861 6298 -5 302 73 0 109 chr6 33616504 33616559 -148798683 + MLT1B LTR MaLR 1 49 -341 * 1002 161 33 0 chr6 33616556 33616736 -148798506 + MLT1B LTR MaLR 205 390 0 275 305 49 44 chr6 33617157 33617337 -148797905 - MIR SINE MIR -63 199 21 237 328 0 0 chr6 33617400 33617467 -148797775 + MER82 DNA MER2_type 496 562 -91 180 195 98 0 chr6 33619875 33619916 -148795326 - MIR SINE MIR -98 164 120 181 367 0 51 chr6 33619984 33620063 -148795179 - MIR SINE MIR -165 97 23 607 163 98 0 chr6 33620093 33620216 -148795026 + Tigger1 DNA MER2_type 2042 2176 -242 2744 232 71 103 chr6 33620216 33620584 -148794658 + L2 LINE L2 295 673 -2641 1887 218 101 27 chr6 33620584 33621167 -148794075 + MLT1E2 LTR MaLR 1 626 0 2744 232 71 103 chr6 33621167 33622205 -148793037 + L2 LINE L2 673 1656 -1658 807 306 72 27 chr6 33622205 33622649 -148792593 + LTR16B LTR ERVL 1 464 0 2991 312 50 42 chr6 33623339 33624925 -148790317 + HERV16 LTR ERVL 858 2430 -2855 1895 129 7 0 chr6 33624925 33625204 -148790038 + AluSq SINE Alu 1 281 -32 294 29 0 0 chr6 33625208 33625243 -148789999 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2991 312 50 42 chr6 33625243 33626039 -148789203 + HERV16 LTR ERVL 2432 3385 -1900 939 359 46 30 chr6 33626231 33627317 -148787925 + HERV16 LTR ERVL 4145 5248 -516 480 329 18 0 chr6 33627337 33627501 -148787741 + LTR16B LTR ERVL 62 228 -236 941 208 15 15 chr6 33627511 33627708 -148787534 + MLT1F1 LTR MaLR 371 567 0 1520 174 7 10 chr6 33627781 33628069 -148787173 - AluJb SINE Alu -25 287 1 1891 241 90 21 chr6 33628242 33628765 -148786477 + MLT1E3 LTR MaLR 14 572 -52 1321 231 10 20 chr6 33628765 33629064 -148786178 + AluJo SINE Alu 1 296 -6 289 191 29 0 chr6 33629098 33629166 -148786076 + MLT1E3 LTR MaLR 555 624 0 218 204 0 0 chr6 33629301 33629350 -148785892 - L2 LINE L2 0 3313 3265 280 268 56 0 chr6 33629399 33629470 -148785772 - L2 LINE L2 -554 2760 2686 180 152 0 0 chr6 33630271 33630304 -148784938 + A-rich Low_complexity Low_complexity 1 33 0 1109 297 98 26 chr6 33634961 33635079 -148780163 - L2 LINE L2 -2 3311 3203 925 170 55 77 chr6 33635079 33635314 -148779928 - MER30 DNA MER1_type 0 230 1 1109 297 98 26 chr6 33635314 33636094 -148779148 - L2 LINE L2 -110 3203 2352 440 242 45 50 chr6 33636377 33636659 -148778583 + L1MEc LINE L1 2145 2386 -3829 812 203 38 0 chr6 33636742 33636900 -148778342 - FRAM SINE Alu -14 162 1 558 176 170 42 chr6 33637409 33637574 -148777668 + MER20 DNA MER1_type 32 217 -2 304 285 169 15 chr6 33637575 33637705 -148777537 - MIR SINE MIR -91 171 22 21 0 0 0 chr6 33639027 33639048 -148776194 + AT_rich Low_complexity Low_complexity 1 21 0 1528 226 46 27 chr6 33639222 33639699 -148775543 + L1MB4 LINE L1 4904 5389 -757 2114 117 0 7 chr6 33639710 33640009 -148775233 + AluSc SINE Alu 1 297 -12 3468 164 44 9 chr6 33640053 33640718 -148774524 + L1MB4 LINE L1 5493 6180 0 1132 169 4 24 chr6 33640862 33641099 -148774143 - MER4A LTR ERV1 -113 551 261 613 116 0 21 chr6 33641103 33641198 -148774044 - MER4A LTR ERV1 -571 93 1 404 236 40 0 chr6 33641217 33641365 -148773877 + L1MC5 LINE L1 7299 7452 -509 539 350 60 45 chr6 33641463 33642146 -148773096 + LTR57-int LTR ERVL 2726 3418 -1925 520 344 37 37 chr6 33642313 33642857 -148772385 + LTR57-int LTR ERVL 3619 4162 -1181 304 229 14 0 chr6 33643616 33643686 -148771556 + MER4B-int LTR ERV1 6000 6070 -688 1825 185 61 26 chr6 33643692 33644120 -148771122 + LTR47B LTR ERVL 1 443 0 675 269 60 60 chr6 33645364 33645465 -148769777 + L1MC5 LINE L1 7352 7452 -509 2951 179 16 11 chr6 33645465 33646017 -148769225 + MER41D LTR ERV1 3 557 0 675 269 60 60 chr6 33646017 33646347 -148768895 + L1MC5 LINE L1 7451 7783 -178 1983 194 16 34 chr6 33646349 33646905 -148768337 + L1MC3 LINE L1 7000 7692 -93 393 225 92 25 chr6 33646970 33647090 -148768152 + L1MC5 LINE L1 7790 7917 -44 1509 155 97 7 chr6 33647101 33647379 -148767863 + AluJo SINE Alu 1 303 -9 2762 170 42 5 chr6 33647450 33648027 -148767215 - L1MB3 LINE L1 0 6183 5586 180 277 123 65 chr6 33649135 33649290 -148765952 - MIR SINE MIR -25 237 74 945 109 32 19 chr6 33649772 33649928 -148765314 - L1MA5 LINE L1 0 6300 6143 7688 185 4 7 chr6 33649928 33651691 -148763551 + L1PB1 LINE L1 3770 5527 -624 1361 58 0 2 chr6 33651691 33651951 -148763291 - AluY SINE Alu 0 311 2 3633 94 54 15 chr6 33651952 33652485 -148762757 + L1PB1 LINE L1 5514 6067 -84 7924 165 19 110 chr6 33652486 33652962 -148762280 - L1MB3 LINE L1 -816 5330 4812 2247 85 41 0 chr6 33652962 33653255 -148761987 + AluSg SINE Alu 1 305 -5 7924 165 19 110 chr6 33653255 33654897 -148760345 - L1MB3 LINE L1 -1334 4812 3405 2634 181 93 58 chr6 33654898 33655413 -148759829 - MER65-int LTR ERV1 -757 1029 1090 2432 77 0 0 chr6 33655413 33655711 -148759531 + AluY SINE Alu 1 298 -13 2634 181 93 58 chr6 33655711 33655996 -148759246 - MER65-int LTR ERV1 -695 1091 817 2323 74 0 14 chr6 33656433 33656730 -148758512 + AluY SINE Alu 1 293 -18 21 36 0 0 chr6 33657580 33657608 -148757634 + AT_rich Low_complexity Low_complexity 1 28 0 309 259 54 45 chr6 33658158 33658270 -148756972 + L2 LINE L2 1700 1812 -1502 1935 271 143 56 chr6 33658272 33658798 -148756444 - HAL1 LINE L1 -10 2497 2018 1120 208 124 69 chr6 33658798 33659144 -148756098 + MLT1A1 LTR MaLR 1 365 0 1935 271 143 56 chr6 33659144 33660021 -148755221 - HAL1 LINE L1 -489 2018 972 226 356 46 26 chr6 33660082 33660276 -148754966 + L2 LINE L2 3116 3313 0 230 326 35 28 chr6 33660500 33660641 -148754601 + MIR SINE MIR 101 242 -20 261 347 24 14 chr6 33660655 33660868 -148754374 - L1ME LINE L1 -354 5767 5553 2012 64 4 16 chr6 33660876 33661156 -148754086 - AluY SINE Alu 0 312 36 2103 261 83 4 chr6 33661407 33661970 -148753272 + MER90 LTR ERV1 5 612 -2 1756 171 24 0 chr6 33662299 33662586 -148752656 + AluSx SINE Alu 1 294 -18 1134 168 35 15 chr6 33663021 33663223 -148752019 - MER3 DNA MER1_type -2 207 2 1778 191 57 17 chr6 33663225 33663576 -148751666 + MLT1A1 LTR MaLR 1 365 0 1423 184 0 106 chr6 33663639 33663970 -148751272 + AluJo SINE Alu 1 296 -16 4122 218 100 41 chr6 33664292 33664643 -148750599 + Charlie1a DNA MER1_type 7 336 -2425 2013 141 3 13 chr6 33664643 33664948 -148750294 + AluSx SINE Alu 1 302 -10 4122 218 100 41 chr6 33664948 33665540 -148749702 + Charlie1a DNA MER1_type 336 892 -1869 1383 197 48 7 chr6 33665540 33665835 -148749407 + AluJo SINE Alu 1 307 -5 4122 218 100 41 chr6 33665835 33666258 -148748984 + Charlie1a DNA MER1_type 892 1455 0 274 233 181 35 chr6 33667029 33667145 -148748097 + L3 LINE CR1 956 1088 -489 * 2317 276 111 29 chr6 33667112 33668245 -148746997 - L2 LINE L2 -2 3311 2108 305 271 308 0 chr6 33668318 33668451 -148746791 - MER5A DNA MER1_type -7 182 9 318 299 132 7 chr6 33668480 33668624 -148746618 - MER5B DNA MER1_type -16 162 1 209 33 33 0 chr6 33668711 33668741 -148746501 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 501 326 47 63 chr6 33668763 33669125 -148746117 - LTR67 LTR ERVL -98 459 104 2880 146 124 10 chr6 33669647 33670146 -148745096 - MER21A LTR ERV1 0 931 376 1281 135 90 12 chr6 33670151 33670396 -148744846 - MER21A LTR ERV1 -667 264 1 2132 178 0 29 chr6 33670405 33670781 -148744461 - MLT1A1 LTR MaLR 0 365 1 6040 198 49 63 chr6 33670858 33671225 -148744017 + L1MB7 LINE L1 3576 3947 -2237 613 238 0 24 chr6 33671225 33671351 -148743891 + FLAM_A SINE Alu 4 126 -7 6040 198 49 63 chr6 33671351 33671434 -148743808 + L1MB7 LINE L1 3947 4030 -2154 2122 138 126 31 chr6 33671434 33671824 -148743418 - MSTA LTR MaLR -1 427 1 6040 198 49 63 chr6 33671824 33672451 -148742791 + L1MB7 LINE L1 4030 4665 -1519 1869 164 6 13 chr6 33672451 33672763 -148742479 + AluJo SINE Alu 1 310 -2 6040 198 49 63 chr6 33672763 33673013 -148742229 + L1MB7 LINE L1 4665 4917 -1267 1829 218 21 46 chr6 33673013 33673490 -148741752 + MLT1C LTR MaLR 3 467 0 6040 198 49 63 chr6 33673490 33673607 -148741635 + L1MB7 LINE L1 4917 5034 -1150 2332 85 0 0 chr6 33673607 33673889 -148741353 + AluSg SINE Alu 1 282 -28 201 39 0 0 chr6 33673889 33673915 -148741327 + (TA)n Simple_repeat Simple_repeat 2 27 0 6040 198 49 63 chr6 33673915 33674049 -148741193 + L1MB7 LINE L1 5033 5167 -1017 374 125 111 0 chr6 33674049 33674121 -148741121 + L1MA7 LINE L1 6211 6290 -1 6040 198 49 63 chr6 33674121 33674311 -148740931 + L1MB7 LINE L1 5167 5358 -826 2153 134 0 0 chr6 33674311 33674609 -148740633 + AluSx SINE Alu 3 300 -12 6040 198 49 63 chr6 33674609 33674727 -148740515 + L1MB7 LINE L1 5358 5476 -708 2147 104 0 4 chr6 33674727 33675007 -148740235 + AluSg SINE Alu 1 279 -31 294 95 0 0 chr6 33675010 33675052 -148740190 + (CA)n Simple_repeat Simple_repeat 2 43 0 6040 198 49 63 chr6 33675052 33675697 -148739545 + L1MB7 LINE L1 5478 6102 -82 6002 138 54 7 chr6 33675780 33676062 -148739180 - L1MA4A LINE L1 -6 6297 6030 357 43 0 0 chr6 33676062 33676109 -148739133 + (CA)n Simple_repeat Simple_repeat 1 47 0 6002 138 54 7 chr6 33676109 33677304 -148737938 - L1MA4A LINE L1 -273 6030 4750 1055 152 76 5 chr6 33677366 33677550 -148737692 - AluJb SINE Alu -16 296 100 2117 181 15 2 chr6 33677551 33677955 -148737287 + L1 LINE L1 3439 3847 -2299 230 196 0 0 chr6 33678515 33678561 -148736681 - L2 LINE L2 -5 3308 3263 747 201 151 102 chr6 33678748 33679171 -148736071 + L1ME3A LINE L1 5727 6170 0 801 199 64 6 chr6 33679938 33680109 -148735133 - MER3 DNA MER1_type 0 209 29 323 378 67 31 chr6 33680536 33680729 -148734513 + L2 LINE L2 3048 3247 -25 256 161 18 18 chr6 33681027 33681083 -148734159 - MIR SINE MIR -111 151 96 512 266 91 35 chr6 33683190 33683389 -148731853 + MIR SINE MIR 5 214 -48 1843 140 6 56 chr6 33686826 33687148 -148728094 - AluJb SINE Alu -6 306 1 1976 259 65 44 chr6 33687304 33688305 -148726937 - L1MEd LINE L1 -4862 1257 318 30 0 0 0 chr6 33688570 33688600 -148726642 + AT_rich Low_complexity Low_complexity 1 30 0 450 222 69 21 chr6 33688602 33688746 -148726496 - L1M4 LINE L1 -917 5229 5079 2275 123 113 49 chr6 33689540 33689948 -148725294 + Tigger2a DNA MER2_type 1 434 0 225 282 153 0 chr6 33690855 33690940 -148724302 + L2 LINE L2 3132 3229 -43 1673 183 138 42 chr6 33696911 33697337 -148717905 + MLT1C LTR MaLR 1 467 0 200 339 0 35 chr6 33697911 33698026 -148717216 + C-rich Low_complexity Low_complexity 3 113 0 334 270 197 26 chr6 33700749 33700901 -148714341 - MIR3 SINE MIR -28 180 3 291 290 10 30 chr6 33700956 33701071 -148714171 + CT-rich Low_complexity Low_complexity 1 196 0 1459 190 9 8 chr6 33701673 33701963 -148713279 + MLT1D LTR MaLR 231 505 0 806 221 23 6 chr6 33702252 33702424 -148712818 + MER5B DNA MER1_type 1 175 -3 998 276 75 41 chr6 33702460 33702898 -148712344 + L2 LINE L2 2853 3305 -8 394 317 81 6 chr6 33704449 33704610 -148710632 - MIR SINE MIR -70 192 20 189 0 0 0 chr6 33704867 33704888 -148710354 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 43960 32 22 1 chr6 33704888 33710904 -148704338 - L1PA3 LINE L1 -10 6145 1 195 69 0 0 chr6 33710960 33710989 -148704253 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1946 129 4 0 chr6 33710989 33711268 -148703974 - AluSx SINE Alu -32 280 1 195 100 0 0 chr6 33711292 33711322 -148703920 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 927 270 159 31 chr6 33711322 33711837 -148703405 - L2 LINE L2 -13 3300 2712 225 0 0 0 chr6 33711839 33711864 -148703378 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 656 197 0 41 chr6 33711864 33711986 -148703256 - FLAM_C SINE Alu -25 118 2 357 290 30 0 chr6 33712232 33712332 -148702910 - MIR3 SINE MIR 0 208 106 2307 85 7 0 chr6 33712444 33712751 -148702491 + AluSc SINE Alu 1 309 0 949 149 29 6 chr6 33713072 33713246 -148701996 + MER53 DNA DNA 9 186 -3 481 339 15 20 chr6 33713275 33713470 -148701772 - L2 LINE L2 -182 3090 2897 323 337 67 36 chr6 33713655 33713848 -148701394 - L2 LINE L2 -685 2629 2431 211 319 0 14 chr6 33714036 33714105 -148701137 + CT-rich Low_complexity Low_complexity 4 71 0 220 195 0 0 chr6 33714366 33714407 -148700835 - MIR3 SINE MIR -51 157 117 590 266 74 10 chr6 33714579 33714782 -148700460 - L2 LINE L2 0 3313 3098 407 341 7 0 chr6 33714988 33715123 -148700119 + L2 LINE L2 2897 3032 -240 496 302 81 9 chr6 33715123 33715413 -148699829 - L2 LINE L2 -209 3104 2797 534 281 182 6 chr6 33715417 33715752 -148699490 - L2 LINE L2 -682 2632 2239 26 0 0 0 chr6 33715781 33715807 -148699435 + AT_rich Low_complexity Low_complexity 1 26 0 2318 78 13 3 chr6 33716782 33717091 -148698151 + AluSp SINE Alu 2 313 0 499 163 0 0 chr6 33717286 33717366 -148697876 - MIR SINE MIR -110 152 73 317 301 168 9 chr6 33717455 33717568 -148697674 - L2 LINE L2 0 3313 3183 745 143 16 16 chr6 33717882 33718008 -148697234 + FLAM_C SINE Alu 1 126 -7 360 277 54 34 chr6 33718192 33718340 -148696902 + L1MC4a LINE L1 5780 5930 -1878 527 235 181 47 chr6 33718768 33719045 -148696197 - HAL1 LINE L1 -4 2503 2190 351 0 0 0 chr6 33719073 33719112 -148696130 + (CA)n Simple_repeat Simple_repeat 2 40 0 1865 139 3 23 chr6 33719219 33719529 -148695713 + AluSx SINE Alu 7 310 -2 2153 81 16 10 chr6 33720357 33720666 -148694576 + AluY SINE Alu 1 311 0 2262 236 29 11 chr6 33720766 33721325 -148693917 + MER90 LTR ERV1 2 570 -5 437 297 47 20 chr6 33721449 33721597 -148693645 - L2 LINE L2 0 3313 3162 357 261 53 106 chr6 33721989 33722177 -148693065 + L1MC4 LINE L1 7864 8041 -1 394 207 46 0 chr6 33722937 33723024 -148692218 + MLT1C LTR MaLR 2 92 -375 1672 155 0 69 chr6 33723026 33723361 -148691881 + AluJb SINE Alu 1 312 0 545 159 0 9 chr6 33723361 33723468 -148691774 + GA-rich Low_complexity Low_complexity 2 107 0 1455 198 120 11 chr6 33723480 33723829 -148691413 + MLT1C LTR MaLR 81 467 0 231 170 0 0 chr6 33723839 33723886 -148691356 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 261 120 22 chr6 33724577 33724669 -148690573 - L2 LINE L2 -187 3085 2985 186 333 0 16 chr6 33724710 33724773 -148690469 - L2 LINE L2 -5 3308 3247 381 202 102 3 chr6 33725794 33725908 -148689334 - L1MC/D LINE L1 -412 5758 5652 342 315 55 7 chr6 33728790 33728936 -148686306 + MIR SINE MIR 50 202 -60 1230 178 58 3 chr6 33729729 33730036 -148685206 - MER33 DNA MER1_type -22 302 1 205 200 0 0 chr6 33730821 33730861 -148684381 + A-rich Low_complexity Low_complexity 1 40 0 1980 100 11 4 chr6 33731065 33731344 -148683898 + AluSq SINE Alu 1 281 -32 258 32 0 0 chr6 33731346 33731377 -148683865 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2228 104 0 0 chr6 33732531 33732828 -148682414 + AluSq SINE Alu 9 305 -8 236 259 26 35 chr6 33732870 33732986 -148682256 + GA-rich Low_complexity Low_complexity 6 120 0 1025 137 35 25 chr6 33733713 33733839 -148681403 + Charlie5 DNA MER1_type 2 132 -2492 1859 131 65 0 chr6 33733839 33734130 -148681112 + AluSx SINE Alu 1 310 -2 1025 137 35 25 chr6 33734130 33734200 -148681042 + Charlie5 DNA MER1_type 132 200 -2424 940 134 51 106 chr6 33734198 33734473 -148680769 + Charlie5 DNA MER1_type 2352 2611 -1 * 1664 134 29 35 chr6 33735258 33735572 -148679670 - AluJb SINE Alu 0 312 1 375 270 74 20 chr6 33736254 33736402 -148678840 - MIR SINE MIR -71 191 36 650 209 23 0 chr6 33738220 33738349 -148676893 - MER94 DNA DNA -1 133 2 587 291 23 17 chr6 33738728 33738900 -148676342 - MER5A DNA MER1_type -16 173 1 210 320 19 0 chr6 33738904 33738981 -148676261 - MIR SINE MIR -109 99 36 2255 112 0 3 chr6 33739316 33739630 -148675612 - AluSq SINE Alu 0 313 1 965 259 63 32 chr6 33740052 33740430 -148674812 + L1MC4a LINE L1 5544 5933 -1875 1756 145 0 60 chr6 33740766 33741083 -148674159 + AluJb SINE Alu 13 310 -2 301 219 156 39 chr6 33741093 33741221 -148674021 + L1ME4a LINE L1 5410 5552 -569 861 240 133 13 chr6 33741318 33741551 -148673691 - MIR SINE MIR 0 262 2 2193 64 0 0 chr6 33741611 33741920 -148673322 + AluY SINE Alu 1 309 0 1252 156 33 0 chr6 33741927 33742139 -148673103 - MER20 DNA MER1_type 0 219 1 385 256 73 46 chr6 33742356 33742575 -148672667 + L1ME4a LINE L1 5894 6118 -3 311 278 46 76 chr6 33742580 33742843 -148672399 + L1ME LINE L1 5319 5573 -548 918 139 0 0 chr6 33743087 33743238 -148672004 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1998 113 3 3 chr6 33743240 33743523 -148671719 - AluSq SINE Alu -30 283 1 371 127 0 0 chr6 33744032 33744087 -148671155 + MLT2D LTR ERVL 1 55 -359 253 320 112 11 chr6 33744279 33744457 -148670785 + L3 LINE CR1 1084 1279 -298 1770 161 32 84 chr6 33744502 33744618 -148670624 + MLT1B LTR MaLR 7 127 -263 4533 108 35 51 chr6 33744618 33744985 -148670257 - MER4E LTR ERV1 0 766 394 2162 99 3 3 chr6 33744985 33745287 -148669955 - AluSx SINE Alu -9 303 2 4533 108 35 51 chr6 33745287 33745698 -148669544 - MER4E LTR ERV1 -372 394 1 1770 161 32 84 chr6 33745698 33745986 -148669256 + MLT1B LTR MaLR 127 390 0 296 271 8 81 chr6 33746141 33746283 -148668959 + L1MC4a LINE L1 5517 5651 -470 2478 172 82 64 chr6 33746283 33746894 -148668348 + LTR26E LTR ERV1 1 622 0 296 271 8 81 chr6 33746894 33746911 -148668331 + L1MC4a LINE L1 5651 5668 -453 325 285 95 88 chr6 33746950 33747234 -148668008 - L2 LINE L2 0 3313 3028 390 234 81 8 chr6 33747261 33747385 -148667857 + L1ME4a LINE L1 5986 6118 -3 755 140 185 0 chr6 33747564 33747721 -148667521 + MER53 DNA DNA 1 186 -3 2206 95 10 3 chr6 33747882 33748188 -148667054 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr6 33748485 33748516 -148666726 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr6 33749023 33749060 -148666182 + AT_rich Low_complexity Low_complexity 1 37 0 205 314 0 0 chr6 33749087 33749138 -148666104 + L2 LINE L2 3190 3240 -32 278 229 115 32 chr6 33749203 33749360 -148665882 + L1MC4a LINE L1 5853 6022 -1786 1714 196 0 0 chr6 33749880 33750192 -148665050 - AluJb SINE Alu 0 312 1 180 222 0 0 chr6 33751388 33751424 -148663818 + MIR SINE MIR 111 146 -116 2571 191 96 36 chr6 33752285 33752355 -148662887 - MER69 DNA AcHobo -3 2523 2459 2045 100 0 37 chr6 33752355 33752676 -148662566 + AluSc SINE Alu 1 309 0 2571 191 96 36 chr6 33752676 33753422 -148661820 - MER69 DNA AcHobo -67 2459 1650 2199 219 151 11 chr6 33753452 33754015 -148661227 - MER69 DNA AcHobo -1835 691 50 1120 162 43 32 chr6 33754492 33754745 -148660497 - L1MA8 LINE L1 -133 6158 5903 194 292 42 14 chr6 33755956 33756028 -148659214 - L2 LINE L2 -39 3274 3201 365 351 0 15 chr6 33756115 33756246 -148658996 - MER91A DNA MER1_type -8 188 60 201 255 39 0 chr6 33756477 33756528 -148658714 - L2 LINE L2 -2 3270 3218 356 264 192 10 chr6 33756817 33757010 -148658232 - L1MC4a LINE L1 -1702 6106 5879 29 0 0 0 chr6 33757010 33757039 -148658203 + AT_rich Low_complexity Low_complexity 1 29 0 2157 74 60 0 chr6 33757153 33757436 -148657806 - AluY SINE Alu -11 300 1 1587 240 49 48 chr6 33757446 33758013 -148657229 - L1MC4a LINE L1 -1926 5882 5315 207 239 0 0 chr6 33758378 33758445 -148656797 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 314 362 26 0 chr6 33758505 33758621 -148656621 + MIR SINE MIR 11 129 -133 363 327 93 16 chr6 33758644 33758901 -148656341 - L2 LINE L2 -2361 953 677 871 244 95 95 chr6 33758914 33759174 -148656068 - MER21B LTR ERV1 -417 446 184 2327 90 0 3 chr6 33759174 33759486 -148655756 + AluSq SINE Alu 1 311 -2 871 244 95 95 chr6 33759486 33759574 -148655668 - MER21B LTR ERV1 -678 185 98 445 211 67 19 chr6 33759697 33759801 -148655441 + Tigger5 DNA MER2_type 2215 2323 0 296 150 167 0 chr6 33759801 33759861 -148655381 - MER21B LTR ERV1 -793 70 1 301 258 21 21 chr6 33760366 33760459 -148654783 + L3b LINE CR1 1290 1382 -201 237 329 38 0 chr6 33761862 33761941 -148653301 + MIR3 SINE MIR 116 197 -11 231 283 0 0 chr6 33762046 33762106 -148653136 + T-rich Low_complexity Low_complexity 5 64 0 216 0 0 0 chr6 33762313 33762337 -148652905 + (CA)n Simple_repeat Simple_repeat 2 25 0 296 313 101 46 chr6 33762351 33762568 -148652674 - L1MC4a LINE L1 -1901 5907 5679 567 295 82 62 chr6 33762596 33762952 -148652290 - L1MC4a LINE L1 -1161 4985 4623 432 322 96 17 chr6 33763425 33763578 -148651664 - L2 LINE L2 0 3313 3173 1988 107 0 0 chr6 33763578 33763850 -148651392 - AluSg1 SINE Alu 0 309 38 432 322 96 17 chr6 33763850 33763988 -148651254 - L2 LINE L2 -140 3173 2999 492 278 56 140 chr6 33764037 33764117 -148651125 - L2 LINE L2 -755 2559 2474 6829 57 7 0 chr6 33764117 33764963 -148650279 + L1PA7 LINE L1 5288 6139 -15 492 278 56 140 chr6 33764963 33765249 -148649993 - L2 LINE L2 -840 2474 2165 868 137 0 0 chr6 33765249 33765373 -148649869 + AluJo SINE Alu 4 127 -175 492 278 56 140 chr6 33765373 33765429 -148649813 - L2 LINE L2 -1149 2165 2106 982 177 0 0 chr6 33765429 33765593 -148649649 + AluJo SINE Alu 137 300 -2 492 278 56 140 chr6 33765593 33765852 -148649390 - L2 LINE L2 -1208 2106 1934 527 314 171 14 chr6 33765861 33766300 -148648942 - L2 LINE L2 -1776 1538 1031 503 303 116 45 chr6 33766907 33767329 -148647913 - L1 LINE L1 -1126 5020 4569 186 43 0 0 chr6 33767672 33767695 -148647547 + (T)n Simple_repeat Simple_repeat 1 23 0 185 287 143 43 chr6 33768253 33768483 -148646759 - L2 LINE L2 -343 2971 2719 2158 64 3 3 chr6 33770651 33770957 -148644285 - AluY SINE Alu 0 306 1 1517 221 107 43 chr6 33772514 33772972 -148642270 + MLT1E LTR MaLR 1 536 -57 2120 113 0 7 chr6 33772972 33773282 -148641960 - AluSx SINE Alu -4 308 1 1517 221 107 43 chr6 33773282 33773344 -148641898 + MLT1E LTR MaLR 536 593 0 292 247 155 10 chr6 33773379 33773476 -148641766 + L2 LINE L2 3162 3272 0 646 315 81 8 chr6 33773642 33773877 -148641365 + MIR SINE MIR 10 261 -1 2786 44 0 6 chr6 33773915 33774255 -148640987 - L1PA5 LINE L1 -5 6149 5812 22 0 0 0 chr6 33774307 33774329 -148640913 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 154 28 chr6 33774445 33774659 -148640583 - L2 LINE L2 -181 3091 2851 866 284 72 0 chr6 33775450 33775686 -148639556 + MIR SINE MIR 9 261 -1 22 80 0 0 chr6 33776257 33776307 -148638935 + AT_rich Low_complexity Low_complexity 1 50 0 247 313 84 99 chr6 33777468 33777800 -148637442 + L2 LINE L2 2943 3269 -3 501 269 31 31 chr6 33777826 33777956 -148637286 - MIR3 SINE MIR -77 131 2 207 225 59 34 chr6 33778860 33778965 -148636277 + MER5A DNA MER1_type 26 183 -6 228 186 29 14 chr6 33779782 33779852 -148635390 + (TA)n Simple_repeat Simple_repeat 1 71 0 591 161 201 20 chr6 33780136 33780285 -148634957 - MER5A DNA MER1_type 0 189 14 317 304 134 0 chr6 33780278 33780390 -148634852 + L2 LINE L2 3145 3271 -1 * 288 292 83 47 chr6 33780987 33781162 -148634080 - MIR SINE MIR -56 206 23 1182 156 0 50 chr6 33781720 33781958 -148633284 - AluJo SINE Alu 0 312 87 266 299 197 7 chr6 33782030 33782177 -148633065 - MIR3 SINE MIR -4 204 30 193 282 26 64 chr6 33782375 33782453 -148632789 - MIR SINE MIR -78 184 110 538 299 117 5 chr6 33783116 33783313 -148631929 - MIR SINE MIR -16 246 28 218 312 11 0 chr6 33784258 33784351 -148630891 + (CA)n Simple_repeat Simple_repeat 2 95 0 221 280 0 0 chr6 33784431 33784481 -148630761 - L2 LINE L2 0 3313 3264 399 300 64 0 chr6 33785825 33785965 -148629277 - MIR SINE MIR -41 221 73 1296 164 17 116 chr6 33786011 33786238 -148629004 - MER33 DNA MER1_type -2261 324 143 2296 60 23 3 chr6 33786238 33786540 -148628702 + AluY SINE Alu 1 308 -3 1296 164 17 116 chr6 33786540 33786665 -148628577 - MER33 DNA MER1_type -2442 143 7 357 288 76 33 chr6 33786875 33787059 -148628183 + MIR SINE MIR 20 211 -51 315 0 0 0 chr6 33787169 33787204 -148628038 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr6 33787767 33787798 -148627444 + (TC)n Simple_repeat Simple_repeat 1 31 0 460 323 103 36 chr6 33788780 33789275 -148625967 + L2 LINE L2 2450 2977 -337 7239 57 6 6 chr6 33789332 33791048 -148624194 - L1PA7 LINE L1 0 6154 4435 251 310 107 83 chr6 33791068 33791358 -148623884 + L2 LINE L2 2968 3264 -8 327 285 133 53 chr6 33791693 33791844 -148623398 - MIR3 SINE MIR -43 165 3 569 304 149 5 chr6 33792932 33793133 -148622109 + MIR SINE MIR 32 261 -1 348 274 140 43 chr6 33794165 33794329 -148620913 - MIR3 SINE MIR -14 194 15 944 236 41 24 chr6 33795289 33795535 -148619707 + MIR SINE MIR 2 251 -11 579 205 180 31 chr6 33795727 33795888 -148619354 - MER5A DNA MER1_type -1 188 4 2000 138 0 0 chr6 33797648 33797946 -148617296 + AluSx SINE Alu 6 303 -9 1617 126 119 0 chr6 33797948 33798225 -148617017 + AluSx SINE Alu 1 310 -2 267 31 0 0 chr6 33798490 33798522 -148616720 + (TAG)n Simple_repeat Simple_repeat 1 32 0 307 284 53 64 chr6 33798801 33798995 -148616247 - MIR SINE MIR -41 221 32 5444 101 2 23 chr6 33800013 33800807 -148614435 - L1PA11 LINE L1 0 6174 5397 11332 195 42 25 chr6 33800886 33802611 -148612631 - L1 LINE L1 -1439 5409 3715 2130 112 0 7 chr6 33802611 33802916 -148612326 - AluSq SINE Alu -10 303 1 11332 195 42 25 chr6 33802916 33804753 -148610489 - L1 LINE L1 -3133 3715 1772 2385 73 0 0 chr6 33804753 33805054 -148610188 - AluY SINE Alu -10 301 1 11332 195 42 25 chr6 33805054 33806223 -148609019 - L1 LINE L1 -5076 1772 624 230 362 26 9 chr6 33806331 33806447 -148608795 - L1M2 LINE L1 -6065 784 667 192 77 0 0 chr6 33806510 33806536 -148608706 + (CAG)n Simple_repeat Simple_repeat 3 28 0 188 268 0 0 chr6 33806566 33806607 -148608635 - L2 LINE L2 -36 3277 3237 1864 137 0 10 chr6 33806629 33806921 -148608321 + AluSx SINE Alu 15 303 -9 373 331 194 19 chr6 33806983 33807303 -148607939 + L2 LINE L2 2919 3294 -19 778 209 19 6 chr6 33807389 33807547 -148607695 + FRAM SINE Alu 1 160 -6 239 171 0 0 chr6 33807551 33807586 -148607656 + Alu SINE Alu 2 36 -264 2476 55 0 3 chr6 33807886 33808195 -148607047 + AluY SINE Alu 2 309 -2 464 234 39 23 chr6 33808634 33808762 -148606480 - L2 LINE L2 -5 3308 3179 204 125 0 0 chr6 33810380 33810412 -148604830 + (TCC)n Simple_repeat Simple_repeat 2 33 0 315 164 0 0 chr6 33810474 33810535 -148604707 + CT-rich Low_complexity Low_complexity 2 62 0 2316 83 3 0 chr6 33811819 33812119 -148603123 + AluY SINE Alu 1 301 -10 2492 30 7 3 chr6 33812119 33812421 -148602821 + AluY SINE Alu 1 303 -8 360 148 102 45 chr6 33812853 33812941 -148602301 + MER91C DNA MER1_type 35 127 -13 347 252 25 76 chr6 33814271 33814390 -148600852 - L2 LINE L2 -38 3275 3163 289 340 64 13 chr6 33814484 33814640 -148600602 - L2 LINE L2 -433 2881 2718 1207 282 49 27 chr6 33814656 33815107 -148600135 + MLT1J LTR MaLR 1 461 -50 467 311 37 21 chr6 33815138 33815328 -148599914 - L2 LINE L2 -620 2694 2502 538 258 102 67 chr6 33815507 33815790 -148599452 - L2 LINE L2 -1 3312 3020 811 170 0 0 chr6 33816713 33816848 -148598394 - FLAM_C SINE Alu -3 140 6 3080 146 14 70 chr6 33817019 33817355 -148597887 - L1 LINE L1 -1189 4957 4604 2277 93 7 0 chr6 33817355 33817655 -148597587 - AluSg SINE Alu -8 302 1 3080 146 14 70 chr6 33817655 33818177 -148597065 - L1 LINE L1 -1542 4604 4224 1733 149 10 5 chr6 33818172 33818748 -148596494 + L1MA5 LINE L1 5553 6253 -47 * 1616 103 5 0 chr6 33818749 33818973 -148596269 + AluSx SINE Alu 1 225 -87 816 103 0 0 chr6 33818973 33819090 -148596152 + AluSg/x SINE Alu 185 301 -11 201 191 95 0 chr6 33819310 33819352 -148595890 - MER91A DNA MER1_type -27 169 124 413 294 119 17 chr6 33819557 33819734 -148595508 + MIR3 SINE MIR 1 195 -13 284 219 179 3 chr6 33820565 33820675 -148594567 - MIR SINE MIR -62 146 30 186 194 0 0 chr6 33821273 33821304 -148593938 + L2 LINE L2 3025 3055 -217 1818 157 56 15 chr6 33821755 33822079 -148593163 + MER2 DNA MER2_type 1 337 -8 209 285 236 8 chr6 33822360 33822483 -148592759 - MIR3 SINE MIR -29 179 29 395 198 58 12 chr6 33823449 33823535 -148591707 - MIR3 SINE MIR -11 197 108 212 272 235 0 chr6 33823555 33823636 -148591606 - MER91B DNA MER1_type 0 190 91 301 328 8 42 chr6 33823663 33823782 -148591460 - MER91B DNA MER1_type -75 115 1 2474 68 0 0 chr6 33823803 33824111 -148591131 - AluY SINE Alu -3 308 1 1408 185 3 48 chr6 33824177 33824490 -148590752 + AluJb SINE Alu 13 311 -1 425 300 50 6 chr6 33824882 33825042 -148590200 + MIR SINE MIR 67 233 -29 2135 105 0 16 chr6 33825739 33826044 -148589198 + AluSc SINE Alu 1 300 -9 189 321 38 0 chr6 33826047 33826100 -148589142 - MIR3 SINE MIR -40 168 114 718 260 96 29 chr6 33826503 33826893 -148588349 + L1MC5 LINE L1 7127 7498 -544 560 239 70 111 chr6 33826943 33827218 -148588024 + L1MC4 LINE L1 7492 7777 -265 1617 176 17 3 chr6 33827218 33827514 -148587728 - AluJb SINE Alu -7 305 6 560 239 70 111 chr6 33827514 33827576 -148587666 + L1MC4 LINE L1 7777 7812 -230 2151 81 3 3 chr6 33827576 33827891 -148587351 - AluSq SINE Alu 0 315 1 560 239 70 111 chr6 33827891 33827965 -148587277 + L1MC4 LINE L1 7812 7888 -154 435 150 75 0 chr6 33827965 33828045 -148587197 - AluS SINE Alu -7 305 220 243 283 0 0 chr6 33828159 33828212 -148587030 + L2 LINE L2 3261 3313 0 345 216 74 117 chr6 33828304 33828466 -148586776 - MIR3 SINE MIR -49 159 5 219 216 8 136 chr6 33828958 33829083 -148586159 - MIR3 SINE MIR -17 191 83 2194 94 3 3 chr6 33829135 33829442 -148585800 + AluSp SINE Alu 1 307 -6 1395 176 11 26 chr6 33829731 33829998 -148585244 + AluJo SINE Alu 1 263 -49 411 298 83 36 chr6 33830838 33831006 -148584236 + MER5B DNA MER1_type 2 177 -1 231 308 28 56 chr6 33831010 33831153 -148584089 - MIR3 SINE MIR -60 148 10 276 293 160 9 chr6 33831218 33831430 -148583812 - L2 LINE L2 -345 2969 2726 411 234 126 0 chr6 33831441 33831552 -148583690 - L2 LINE L2 0 3313 3189 558 294 91 75 chr6 33831848 33832286 -148582956 + L2 LINE L2 2808 3252 -20 182 291 0 36 chr6 33832310 33832365 -148582877 + L2 LINE L2 3217 3269 -3 201 74 0 0 chr6 33832682 33832709 -148582533 + (T)n Simple_repeat Simple_repeat 1 27 0 468 201 189 12 chr6 33832732 33832896 -148582346 - L1ME3A LINE L1 -295 5875 5683 389 297 34 2 chr6 33832905 33833071 -148582171 - L1ME3A LINE L1 -544 5620 5450 423 0 0 0 chr6 33833082 33833129 -148582113 + (TG)n Simple_repeat Simple_repeat 2 48 0 375 246 123 0 chr6 33833397 33833519 -148581723 + MER104 DNA Tc2 6 142 -38 799 196 7 7 chr6 33833533 33833681 -148581561 + MSTD LTR MaLR 1 148 -248 601 135 0 0 chr6 33833688 33833777 -148581465 + MSTD LTR MaLR 308 396 0 653 211 8 8 chr6 33833896 33834057 -148581185 + FLAM_A SINE Alu 1 161 0 2317 64 0 3 chr6 33834102 33834398 -148580844 + AluSc SINE Alu 1 295 -14 958 133 122 89 chr6 33834725 33834995 -148580247 - Tigger7 DNA MER2_type 0 2487 2209 888 201 7 0 chr6 33835001 33835155 -148580087 - Tigger7 DNA MER2_type -569 164 10 297 257 239 0 chr6 33835176 33835285 -148579957 + L2 LINE L2 3136 3270 -2 3067 124 154 109 chr6 33835876 33836091 -148579151 + L1MC3 LINE L1 6879 7083 -702 309 264 23 11 chr6 33836091 33836178 -148579064 + MLT1F1 LTR MaLR 35 122 -445 3067 124 154 109 chr6 33836178 33836737 -148578505 + L1MC3 LINE L1 7083 7778 -7 201 176 0 0 chr6 33837096 33837130 -148578112 + A-rich Low_complexity Low_complexity 1 34 0 2491 46 0 0 chr6 33839084 33839386 -148575856 + AluSc SINE Alu 2 303 -6 264 310 110 33 chr6 33839467 33839881 -148575361 + L2 LINE L2 2713 3232 -81 914 44 0 11 chr6 33839966 33840146 -148575096 - L1PA4 LINE L1 -3 6152 5929 505 251 109 6 chr6 33840452 33840622 -148574620 + MIR SINE MIR 30 221 -41 1316 209 177 62 chr6 33840785 33841336 -148573906 + MER39 LTR ERV1 6 705 -2 239 0 32 0 chr6 33841421 33841452 -148573790 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1975 132 10 0 chr6 33841937 33842232 -148573010 - AluJo SINE Alu -14 298 1 304 285 197 18 chr6 33842233 33842573 -148572669 + LTR37B LTR ERV1 68 468 0 426 220 75 38 chr6 33842573 33842759 -148572483 - L1MC5 LINE L1 -415 7546 7354 2113 100 7 3 chr6 33842972 33843272 -148571970 - AluSx SINE Alu -11 301 1 280 321 82 15 chr6 33843281 33843415 -148571827 - L1MC4 LINE L1 -568 7474 7332 1102 216 259 5 chr6 33843423 33843793 -148571449 + LTR41 LTR ERVL 1 464 -309 492 210 57 150 chr6 33843838 33844014 -148571228 + L2 LINE L2 1560 1698 -1616 2012 84 12 59 chr6 33844014 33844336 -148570906 - AluSq SINE Alu -6 307 1 492 210 57 150 chr6 33844336 33844459 -148570783 + L2 LINE L2 1698 1831 -1483 2234 82 3 3 chr6 33844674 33844978 -148570264 - AluY SINE Alu -7 304 1 1013 158 64 161 chr6 33844978 33845159 -148570083 - AluJo SINE Alu -5 297 161 2234 102 0 10 chr6 33845159 33845473 -148569769 - AluSq SINE Alu -2 311 1 1013 158 64 161 chr6 33845473 33845620 -148569622 - AluJo SINE Alu -141 161 1 230 0 33 0 chr6 33845635 33845665 -148569577 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5159 97 31 28 chr6 33845672 33846862 -148568380 - SVA Other Other -955 1369 60 186 43 0 0 chr6 33846870 33846893 -148568349 + (GGGAGA)n Simple_repeat Simple_repeat 4 26 0 1238 276 44 62 chr6 33846957 33847621 -148567621 - L1ME3 LINE L1 -212 5950 5275 2870 138 22 16 chr6 33847621 33848115 -148567127 - LOR1a LTR ERV1 0 497 1 1238 276 44 62 chr6 33848115 33848388 -148566854 - L1ME3 LINE L1 -887 5275 5028 1952 172 22 11 chr6 33848388 33848749 -148566493 + MLT1A1 LTR MaLR 1 365 0 1238 276 44 62 chr6 33848749 33848915 -148566327 - L1ME3 LINE L1 -1134 5028 4860 1730 241 77 65 chr6 33848929 33849092 -148566150 - L2 LINE L2 0 3313 3153 2118 97 0 7 chr6 33849092 33849382 -148565860 + AluSc SINE Alu 3 290 -19 1730 241 77 65 chr6 33849382 33850217 -148565025 - L2 LINE L2 -160 3153 2305 210 348 89 0 chr6 33850273 33850385 -148564857 + MER5A DNA MER1_type 68 189 0 481 211 11 0 chr6 33850603 33850693 -148564549 + MER81 DNA DNA 24 114 0 2987 138 74 25 chr6 33850795 33850988 -148564254 - MER41C LTR ERV1 0 554 372 227 53 0 26 chr6 33850988 33851026 -148564216 + (TA)n Simple_repeat Simple_repeat 2 38 0 2987 138 74 25 chr6 33851026 33851210 -148564032 - MER41C LTR ERV1 -182 372 199 1950 128 14 0 chr6 33851210 33851500 -148563742 - AluSg SINE Alu -16 294 1 2987 138 74 25 chr6 33851500 33851649 -148563593 - MER41C LTR ERV1 -355 199 1 520 153 29 18 chr6 33851853 33851971 -148563271 - MLT1E2 LTR MaLR 0 626 431 519 260 121 55 chr6 33852019 33852292 -148562950 - LTR43 LTR ERV1 -125 477 187 1224 246 77 30 chr6 33852644 33853149 -148562093 - MLT1E2 LTR MaLR -69 497 1 447 260 39 0 chr6 33853160 33853264 -148561978 - L2 LINE L2 -19 3294 3187 277 122 20 0 chr6 33853320 33853369 -148561873 - L1MA10 LINE L1 -7 6327 6278 3389 120 0 7 chr6 33853606 33854071 -148561171 - L1PA15 LINE L1 0 6165 5704 1686 231 12 10 chr6 33854076 33854475 -148560767 - L1ME1 LINE L1 -44 6122 5723 2234 174 21 137 chr6 33854646 33855216 -148560026 + MLT1D LTR MaLR 1 504 -1 554 271 125 51 chr6 33856190 33856526 -148558716 + MLT1J1 LTR MaLR 60 420 -26 2228 101 7 0 chr6 33856833 33857129 -148558113 - AluSq SINE Alu -15 298 1 486 302 107 31 chr6 33857133 33857818 -148557424 + L1MC4a LINE L1 4612 5348 -798 1643 278 44 19 chr6 33857872 33858463 -148556779 + L1MC4a LINE L1 5333 5938 -1870 2226 109 0 6 chr6 33859385 33859697 -148555545 - AluY SINE Alu -1 310 1 2230 80 0 11 chr6 33859700 33859986 -148555256 - AluSc SINE Alu -16 293 11 822 219 81 12 chr6 33860147 33860393 -148554849 - L1M4 LINE L1 -1436 4710 4448 2662 148 22 9 chr6 33860409 33860856 -148554386 - L1MA6 LINE L1 -287 6013 5561 311 264 149 0 chr6 33861039 33861160 -148554082 - MER112 DNA MER1_type -9 251 113 201 39 0 0 chr6 33861174 33861200 -148554042 + (TG)n Simple_repeat Simple_repeat 1 26 0 2481 53 3 0 chr6 33861344 33861646 -148553596 - AluY SINE Alu -8 303 1 2309 78 0 0 chr6 33861867 33862161 -148553081 + AluY SINE Alu 1 294 -17 4047 158 82 24 chr6 33862954 33863790 -148551452 - L1MA10 LINE L1 -1 6333 5449 2441 93 0 0 chr6 33864031 33864341 -148550901 + AluY SINE Alu 1 310 -1 769 125 71 0 chr6 33864426 33864538 -148550704 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr6 33864538 33864571 -148550671 + AT_rich Low_complexity Low_complexity 1 33 0 671 223 0 15 chr6 33864623 33864753 -148550489 - FLAM_A SINE Alu -2 131 4 28 29 0 0 chr6 33864759 33864794 -148550448 + AT_rich Low_complexity Low_complexity 1 35 0 2416 102 0 3 chr6 33865092 33865405 -148549837 - AluSq SINE Alu -1 312 1 1197 136 0 0 chr6 33866383 33866559 -148548683 - AluSg/x SINE Alu -3 309 134 2324 87 0 3 chr6 33866976 33867276 -148547966 + AluY SINE Alu 1 299 -12 2268 115 0 6 chr6 33867281 33867631 -148547611 + AluSg SINE Alu 1 348 0 532 231 54 21 chr6 33868627 33868813 -148546429 - L1M4 LINE L1 -3768 2378 2187 2213 104 0 13 chr6 33868970 33869269 -148545973 - AluSg SINE Alu -15 295 1 632 202 0 25 chr6 33869274 33869436 -148545806 - FLAM_A SINE Alu 0 159 1 463 325 76 41 chr6 33869502 33869962 -148545280 - L1M4 LINE L1 -3151 2995 2514 2374 85 10 0 chr6 33869962 33870256 -148544986 - AluSg SINE Alu -13 297 1 463 325 76 41 chr6 33870256 33870309 -148544933 - L1M4 LINE L1 -3632 2514 2464 1391 208 19 7 chr6 33870397 33870666 -148544576 - AluJo SINE Alu -40 272 1 33 73 0 0 chr6 33870807 33870875 -148544367 + AT_rich Low_complexity Low_complexity 1 68 0 1204 224 40 77 chr6 33870875 33871048 -148544194 - L1MA9 LINE L1 -42 6270 6092 1934 129 33 10 chr6 33871048 33871350 -148543892 - AluJb SINE Alu -3 309 1 1204 224 40 77 chr6 33871350 33871577 -148543665 - L1MA9 LINE L1 -220 6092 5885 788 71 0 0 chr6 33871646 33871744 -148543498 + L1PA5 LINE L1 1 98 -6048 * 37985 38 28 2 chr6 33871732 33877132 -148538110 + L1PA5 LINE L1 611 6146 -8 1965 199 8 0 chr6 33877195 33877551 -148537691 + MLT1A1 LTR MaLR 7 365 0 1836 251 82 14 chr6 33877560 33878317 -148536925 + L1ME1 LINE L1 2840 3647 -2499 * 8251 106 4 6 chr6 33878316 33879457 -148535785 - THE1A-int LTR MaLR -441 1139 1 2550 99 8 33 chr6 33879457 33879821 -148535421 - THE1A LTR MaLR 0 355 1 1227 296 35 14 chr6 33879821 33880337 -148534905 + L1ME1 LINE L1 3644 4170 -1976 833 181 8 8 chr6 33880348 33880481 -148534761 + AluJo SINE Alu 3 135 -177 269 214 95 8 chr6 33880485 33880611 -148534631 + L1ME1 LINE L1 4156 4292 -1854 2227 274 19 36 chr6 33880647 33881450 -148533792 + L1ME1 LINE L1 5378 6166 0 256 352 28 21 chr6 33881463 33881608 -148533634 + L1M4c LINE L1 1650 1795 -4589 537 313 55 13 chr6 33881654 33882037 -148533205 + L1M4c LINE L1 2010 2408 -4155 23 33 0 0 chr6 33883511 33883541 -148531701 + GC_rich Low_complexity Low_complexity 1 30 0 180 125 0 0 chr6 33887558 33887590 -148527652 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 1658 299 91 29 chr6 33887740 33888856 -148526386 - L2 LINE L2 -4 3309 2128 204 359 85 0 chr6 33888976 33889082 -148526160 - MER5A DNA MER1_type -63 126 12 241 335 81 19 chr6 33889104 33889265 -148525977 + MER5A DNA MER1_type 19 189 0 207 0 0 0 chr6 33889341 33889364 -148525878 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2815 69 3 0 chr6 33889649 33889996 -148525246 - THE1A LTR MaLR -5 350 3 553 289 50 100 chr6 33890003 33890464 -148524778 - LTR67 LTR ERVL -115 442 5 25 0 0 0 chr6 33890744 33890769 -148524473 + AT_rich Low_complexity Low_complexity 1 25 0 464 245 0 20 chr6 33891004 33891102 -148524140 - MER5C DNA MER1_type -228 96 1 235 244 67 44 chr6 33891178 33891268 -148523974 + L1MEd LINE L1 6 97 -6022 415 341 52 25 chr6 33891606 33891970 -148523272 + L1MEd LINE L1 464 837 -5282 2020 130 3 0 chr6 33891977 33892308 -148522934 + AluSp SINE Alu 1 332 0 2923 254 65 49 chr6 33892452 33893143 -148522099 + L1MEc LINE L1 36 752 -5644 2224 85 21 0 chr6 33893143 33893424 -148521818 + AluSp SINE Alu 1 287 -26 2923 254 65 49 chr6 33893424 33893811 -148521431 + L1MEc LINE L1 752 1131 -5265 324 180 0 15 chr6 33893811 33893884 -148521358 + Alu SINE Alu 1 47 -253 6942 176 28 6 chr6 33893884 33895836 -148519406 + L1MA9 LINE L1 3974 5969 -343 732 266 108 31 chr6 33895881 33896167 -148519075 + MER57A LTR ERV1 84 391 -12 216 0 0 0 chr6 33896174 33896198 -148519044 + (T)n Simple_repeat Simple_repeat 1 24 0 497 170 30 0 chr6 33896201 33896301 -148518941 + L1MA9 LINE L1 5974 6076 -236 311 106 0 0 chr6 33896301 33896348 -148518894 + MER4A LTR ERV1 1 47 -617 1307 97 29 14 chr6 33896376 33896583 -148518659 + L1MA9 LINE L1 6103 6312 0 1642 241 50 8 chr6 33896583 33897107 -148518135 + L1MB8 LINE L1 4406 4951 -1195 * 2675 154 32 56 chr6 33897080 33897581 -148517661 + L1MA9 LINE L1 5283 5771 -541 995 197 53 35 chr6 33897586 33897899 -148517343 - MSTD LTR MaLR 0 396 39 973 98 0 0 chr6 33897901 33898023 -148517219 + FLAM_C SINE Alu 1 122 -21 331 49 0 0 chr6 33898067 33898108 -148517134 - MSTD LTR MaLR -387 41 1 1568 165 72 18 chr6 33898121 33898512 -148516730 + L1MA9 LINE L1 5781 6290 -22 4069 203 35 26 chr6 33898546 33899803 -148515439 + L1MB8 LINE L1 4906 6172 -6 1635 310 60 32 chr6 33899810 33901202 -148514040 + HERV16 LTR ERVL 1079 2592 -2623 28 29 0 0 chr6 33901210 33901245 -148513997 + AT_rich Low_complexity Low_complexity 1 35 0 14215 135 29 31 chr6 33901248 33901862 -148513380 - L1MA1 LINE L1 0 7721 7108 1720 167 11 11 chr6 33901862 33902149 -148513093 - AluJb SINE Alu -19 293 7 14215 135 29 31 chr6 33902149 33902468 -148512774 - L1MA1 LINE L1 -613 7108 6790 1596 166 63 27 chr6 33902468 33902769 -148512473 - AluJb SINE Alu 0 312 1 14215 135 29 31 chr6 33902769 33902787 -148512455 - L1MA1 LINE L1 -931 6790 6773 2432 99 0 0 chr6 33902787 33903099 -148512143 - AluSx SINE Alu 0 312 1 14215 135 29 31 chr6 33903099 33903507 -148511735 - L1MA1 LINE L1 -948 6773 6366 2164 120 0 13 chr6 33903507 33903807 -148511435 - AluSc SINE Alu -13 296 1 14215 135 29 31 chr6 33903807 33905012 -148510230 - L1MA1 LINE L1 -1355 6366 5161 2216 107 10 0 chr6 33905012 33905301 -148509941 - AluSx SINE Alu -20 292 1 14215 135 29 31 chr6 33905301 33906641 -148508601 - L1MA1 LINE L1 -2560 5161 3821 2503 123 80 8 chr6 33906641 33907040 -148508202 - MSTA LTR MaLR 0 428 1 9769 154 22 9 chr6 33907040 33908669 -148506573 - MSTA-int LTR MaLR 0 1651 1 2216 173 36 10 chr6 33908669 33909086 -148506156 - MSTA LTR MaLR 0 428 1 14215 135 29 31 chr6 33909086 33910429 -148504813 - L1MA1 LINE L1 -3897 3824 2419 2255 105 9 16 chr6 33910435 33910750 -148504492 - AluSp SINE Alu 0 313 1 7090 158 39 3 chr6 33910750 33912437 -148502805 - L1P4 LINE L1 -436 5725 3971 231 213 0 0 chr6 33913529 33913576 -148501666 + L2 LINE L2 3138 3184 -88 545 216 0 0 chr6 33914229 33914331 -148500911 - MLT2D LTR ERVL -75 339 238 208 191 21 0 chr6 33916810 33916857 -148498385 + A-rich Low_complexity Low_complexity 2 49 0 195 224 20 0 chr6 33916857 33916906 -148498336 - MIR SINE MIR -56 206 157 532 285 142 11 chr6 33917042 33917309 -148497933 - L3 LINE CR1 -25 1552 1251 277 227 30 15 chr6 33917346 33917412 -148497830 - L1ME LINE L1 -6001 69 3 226 282 101 26 chr6 33917435 33917630 -148497612 - L2 LINE L2 0 3272 2979 641 243 89 28 chr6 33917677 33917891 -148497351 + MIR SINE MIR 26 252 -10 2241 119 0 0 chr6 33919018 33919313 -148495929 + AluSx SINE Alu 3 297 -15 578 301 85 19 chr6 33919826 33920085 -148495157 - MLT1I LTR MaLR -13 396 121 1463 219 7 4 chr6 33920838 33921117 -148494125 - AluJo SINE Alu -32 280 1 11788 182 49 12 chr6 33921149 33921537 -148493705 - L1PA15 LINE L1 0 6868 6496 2202 98 27 10 chr6 33921537 33921833 -148493409 - AluSg SINE Alu -7 303 3 11788 182 49 12 chr6 33921833 33924712 -148490530 - L1PA15 LINE L1 -372 6496 3482 2057 141 3 3 chr6 33924712 33925009 -148490233 - AluSx SINE Alu -15 297 1 11788 182 49 12 chr6 33925009 33925143 -148490099 - L1PA15 LINE L1 -3386 3482 3354 1257 206 14 1 chr6 33925137 33925452 -148489790 - L1PA15 LINE L1 -3821 3028 2710 * 192 40 0 0 chr6 33928406 33928431 -148486811 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2160 99 14 0 chr6 33928433 33928717 -148486525 - AluSq SINE Alu -25 288 1 267 350 43 7 chr6 33928986 33929126 -148486116 - MER5A DNA MER1_type 0 189 45 220 192 51 51 chr6 33929230 33929308 -148485934 - MER5A DNA MER1_type -103 86 9 212 319 152 1 chr6 33931542 33931687 -148483555 - MIR SINE MIR -57 205 41 2264 91 14 0 chr6 33932361 33932657 -148482585 - AluSc SINE Alu -9 300 1 2105 128 10 3 chr6 33932661 33932958 -148482284 - AluSx SINE Alu -13 299 1 2277 93 17 0 chr6 33934157 33934457 -148480785 + AluSc SINE Alu 1 305 -4 1815 156 3 37 chr6 33934513 33934834 -148480408 + AluSx SINE Alu 1 310 -2 348 283 20 0 chr6 33935576 33935675 -148479567 + MIR SINE MIR 45 145 -63 2270 183 42 11 chr6 33936744 33937192 -148478050 + MLT1C LTR MaLR 6 467 0 2038 223 95 13 chr6 33937413 33937937 -148477305 + MLT1F1 LTR MaLR 1 567 0 474 190 100 10 chr6 33938427 33938527 -148476715 - MER45A DNA AcHobo 0 178 70 645 218 52 15 chr6 33938648 33938900 -148476342 + LTR16C LTR ERVL 167 491 0 200 340 100 27 chr6 33939050 33939200 -148476042 - L2 LINE L2 -528 2786 2626 718 205 24 12 chr6 33939760 33939926 -148475316 - MER5B DNA MER1_type 0 178 11 783 235 101 0 chr6 33940029 33940208 -148475034 - MLT1J LTR MaLR -313 198 2 183 289 79 0 chr6 33940909 33940985 -148474257 - MIR SINE MIR -107 155 74 2293 126 95 18 chr6 33941990 33942378 -148472864 - MSTA LTR MaLR -7 421 4 813 146 0 44 chr6 33942402 33942539 -148472703 + FLAM_C SINE Alu 3 133 0 1036 216 69 10 chr6 33942561 33942871 -148472371 + MSTC-int LTR MaLR 1227 1580 0 1813 133 200 3 chr6 33942871 33943186 -148472056 + MSTC LTR MaLR 1 377 -51 381 235 108 13 chr6 33943187 33943426 -148471816 + L1MC4a LINE L1 5265 5550 -626 1223 146 275 0 chr6 33943436 33943716 -148471526 - LTR29 LTR ERV1 -262 360 4 1040 139 8 105 chr6 33943752 33943986 -148471256 + Charlie5 DNA MER1_type 2345 2551 -34 1999 128 7 20 chr6 33943986 33944283 -148470959 - AluSx SINE Alu -19 293 1 1040 139 8 105 chr6 33944283 33944315 -148470927 + Charlie5 DNA MER1_type 2551 2585 0 23 0 0 0 chr6 33944349 33944372 -148470870 + AT_rich Low_complexity Low_complexity 1 23 0 398 259 170 30 chr6 33944545 33944946 -148470296 + L1MC/D LINE L1 5304 5760 -2048 3603 175 28 49 chr6 33945100 33945849 -148469393 - MER44D DNA MER2_type 0 605 1 1419 211 83 52 chr6 33945913 33946266 -148468976 + MER84 LTR ERVI 14 387 -120 4424 101 79 8 chr6 33946266 33946546 -148468696 - LTR8 LTR ERV1 0 691 432 1787 104 7 62 chr6 33946546 33946835 -148468407 + AluSq SINE Alu 35 307 -6 4424 101 79 8 chr6 33946835 33947199 -148468043 - LTR8 LTR ERV1 -259 432 1 1419 211 83 52 chr6 33947199 33947324 -148467918 + MER84 LTR ERVI 387 507 0 482 299 85 14 chr6 33947324 33947678 -148467564 + L1MC4a LINE L1 5562 5940 -1868 29 47 0 0 chr6 33947869 33947912 -148467330 + AT_rich Low_complexity Low_complexity 1 43 0 957 244 122 35 chr6 33948238 33948433 -148466809 + MER58B DNA MER1_type 3 236 -2184 2153 84 0 42 chr6 33948433 33948743 -148466499 - AluSx SINE Alu -15 297 1 957 244 122 35 chr6 33948743 33948859 -148466383 + MER58B DNA MER1_type 236 341 0 255 331 7 22 chr6 33949903 33950039 -148465203 - L2 LINE L2 -2 3270 3137 21 0 0 0 chr6 33950575 33950596 -148464646 + GC_rich Low_complexity Low_complexity 1 21 0 899 111 19 167 chr6 33952284 33952500 -148462742 - MER30B DNA MER1_type 0 190 7 2167 136 3 0 chr6 33954746 33955056 -148460186 + AluSx SINE Alu 2 312 0 344 249 96 8 chr6 33955833 33955958 -148459284 - MIR SINE MIR -61 147 37 * 436 300 33 0 chr6 33955956 33956076 -148459166 - L2 LINE L2 -10 3262 3139 1248 253 155 39 chr6 33956614 33957113 -148458129 - MER20B DNA MER1_type -6 777 173 2465 68 0 13 chr6 33957113 33957420 -148457822 - AluY SINE Alu -8 303 1 1248 253 155 39 chr6 33957420 33957616 -148457626 - MER20B DNA MER1_type -610 173 1 258 254 0 0 chr6 33957714 33957773 -148457469 + (CA)n Simple_repeat Simple_repeat 2 60 0 1084 238 66 14 chr6 33958496 33958782 -148456460 - AluJo SINE Alu -1 301 1 252 78 0 62 chr6 33959040 33959104 -148456138 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1461 195 0 14 chr6 33959105 33959382 -148455860 - AluJb SINE Alu -39 273 1 652 160 0 0 chr6 33960124 33960224 -148455018 - Tigger1 DNA MER2_type 0 2418 2319 10044 115 151 82 chr6 33960224 33960880 -148454362 - Tigger1 DNA MER2_type -236 2182 1573 2173 108 0 17 chr6 33960880 33961176 -148454066 + AluSq SINE Alu 1 291 -22 10044 115 151 82 chr6 33961176 33961187 -148454055 - Tigger1 DNA MER2_type -845 1573 1564 754 206 0 0 chr6 33961187 33961313 -148453929 + FLAM_C SINE Alu 2 127 -16 10044 115 151 82 chr6 33961313 33962560 -148452682 - Tigger1 DNA MER2_type -854 1564 1 2287 109 10 0 chr6 33962904 33963208 -148452034 - AluSx SINE Alu -5 307 1 347 254 29 58 chr6 33964639 33964685 -148450557 + MER94 DNA DNA 1 47 -87 2325 115 0 0 chr6 33964685 33964990 -148450252 + AluSx SINE Alu 1 305 -7 347 254 29 58 chr6 33964990 33965081 -148450161 + MER94 DNA DNA 47 134 0 214 233 144 11 chr6 33967530 33967620 -148447622 - MER5A DNA MER1_type -22 167 66 1941 113 38 34 chr6 33967620 33967911 -148447331 - AluSx SINE Alu -20 292 1 216 204 74 0 chr6 33969647 33969701 -148445541 - L2 LINE L2 0 3313 3256 523 287 127 68 chr6 33971275 33971628 -148443614 - MLT1H1 LTR MaLR 0 547 152 2054 116 10 7 chr6 33971628 33971920 -148443322 + AluSx SINE Alu 1 293 -19 523 287 127 68 chr6 33971920 33972040 -148443202 - MLT1H1 LTR MaLR -395 152 41 1747 143 46 83 chr6 33972081 33972430 -148442812 + MER1B DNA MER1_type 1 336 -1 285 216 62 52 chr6 33973628 33973725 -148441517 - L1MD3 LINE L1 -6 7989 7892 4238 163 27 60 chr6 33973732 33974802 -148440440 - L1MB4 LINE L1 -1 6179 5147 2601 53 7 0 chr6 33975329 33975630 -148439612 - AluY SINE Alu -8 303 1 233 351 79 16 chr6 33975708 33976152 -148439090 - L1ME LINE L1 -383 5779 5308 1660 178 86 14 chr6 33976184 33976532 -148438710 + MLT1A2 LTR MaLR 1 373 -1 207 0 0 0 chr6 33976548 33976571 -148438671 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 270 236 0 0 chr6 33976592 33976664 -148438578 - L1MB4 LINE L1 -1112 5034 4963 199 197 56 42 chr6 33977296 33977367 -148437875 + MIR SINE MIR 56 127 -135 441 293 60 5 chr6 33977529 33977744 -148437498 - L1MC4a LINE L1 -1875 5933 5707 2365 92 13 0 chr6 33977807 33978112 -148437130 + AluSp SINE Alu 1 309 -4 377 169 26 0 chr6 33978124 33978201 -148437041 + L1ME3A LINE L1 5862 5940 -230 233 367 33 43 chr6 33978539 33978749 -148436493 - L1MC4a LINE L1 -2152 5656 5449 186 43 0 0 chr6 33978756 33978779 -148436463 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr6 33979788 33979826 -148435416 + AT_rich Low_complexity Low_complexity 1 38 0 1695 167 14 11 chr6 33979844 33980120 -148435122 + AluJo SINE Alu 21 297 -15 956 176 15 60 chr6 33980220 33980419 -148434823 + MER20 DNA MER1_type 30 219 0 270 216 19 161 chr6 33980532 33980694 -148434548 + L2 LINE L2 3175 3313 0 223 395 6 17 chr6 33980788 33980965 -148434277 - MIR SINE MIR -79 183 9 2244 119 0 0 chr6 33981008 33981311 -148433931 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr6 33982051 33982072 -148433170 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 33982694 33982715 -148432527 + AT_rich Low_complexity Low_complexity 1 21 0 287 329 66 24 chr6 33984355 33984522 -148430720 + L2 LINE L2 2571 2744 -570 2044 196 16 13 chr6 33984527 33984886 -148430356 + L1 LINE L1 3888 4250 -1896 243 0 0 0 chr6 33984886 33984913 -148430329 + (CA)n Simple_repeat Simple_repeat 2 28 0 2044 196 16 13 chr6 33984913 33985003 -148430239 + L1 LINE L1 4250 4338 -1808 1933 188 46 73 chr6 33985458 33985936 -148429306 + MLT1D LTR MaLR 38 502 -3 1496 203 108 87 chr6 33985945 33986156 -148429086 + MLT1D LTR MaLR 3 208 -297 892 65 0 32 chr6 33986156 33986280 -148428962 - L1PA14 LINE L1 -4 6157 6038 1496 203 108 87 chr6 33986280 33986561 -148428681 + MLT1D LTR MaLR 208 505 0 1604 102 119 0 chr6 33988223 33988459 -148426783 - AluSc SINE Alu -15 294 31 207 0 0 0 chr6 33989080 33989103 -148426139 + (CA)n Simple_repeat Simple_repeat 1 23 0 190 396 77 35 chr6 33989841 33990217 -148425025 + L2 LINE L2 2572 2963 -351 21 0 0 0 chr6 33990234 33990255 -148424987 + AT_rich Low_complexity Low_complexity 1 21 0 242 366 20 13 chr6 33990367 33990520 -148424722 + L2 LINE L2 3159 3312 -1 21 36 0 0 chr6 33990595 33990623 -148424619 + AT_rich Low_complexity Low_complexity 1 28 0 229 273 0 0 chr6 33990773 33990828 -148424414 - MIR SINE MIR -129 133 79 390 273 0 0 chr6 33990829 33990906 -148424336 - AluJ/FLAM SINE Alu -220 82 6 381 93 0 0 chr6 33991028 33991082 -148424160 + (TG)n Simple_repeat Simple_repeat 1 54 0 2096 124 3 37 chr6 33991745 33992068 -148423174 + AluSx SINE Alu 1 312 0 6444 81 27 0 chr6 33992074 33993569 -148421673 + L1PA13 LINE L1 4630 6159 -4 359 269 57 51 chr6 33993848 33994023 -148421219 + MLT2E LTR ERVL 32 207 -421 2746 172 14 16 chr6 33994221 33994726 -148420516 - MLT1D LTR MaLR -1 504 1 2459 48 3 44 chr6 33994901 33995217 -148420025 - AluY SINE Alu -8 303 1 21 0 0 0 chr6 33995752 33995773 -148419469 + AT_rich Low_complexity Low_complexity 1 21 0 4624 191 21 22 chr6 33995951 33996680 -148418562 - L1MB7 LINE L1 -1 6183 5462 2454 150 114 46 chr6 33996680 33997199 -148418043 - LTR64 LTR ERVK -4 554 1 4624 191 21 22 chr6 33997199 33997622 -148417620 - L1MB7 LINE L1 -722 5462 5040 461 129 0 24 chr6 33997622 33997707 -148417535 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1987 161 0 7 chr6 33997709 33998014 -148417228 - AluJb SINE Alu -9 303 1 369 194 19 2 chr6 33998014 33998113 -148417129 - L1MB7 LINE L1 -1096 5050 4943 * 688 224 50 14 chr6 33998109 33998328 -148416914 - L1MB7 LINE L1 -1780 4366 4140 225 365 9 17 chr6 34001339 34001454 -148413788 - MIR SINE MIR 0 262 149 2144 113 3 0 chr6 34001477 34001760 -148413482 + AluSq SINE Alu 1 284 -29 765 61 0 0 chr6 34001760 34001859 -148413383 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 406 275 8 17 chr6 34001892 34002012 -148413230 - MIR SINE MIR -133 129 11 219 158 18 35 chr6 34002670 34002727 -148412515 + T-rich Low_complexity Low_complexity 3 58 0 330 299 41 82 chr6 34002990 34003284 -148411958 - L1MEd LINE L1 -5350 769 488 433 316 51 52 chr6 34003680 34004305 -148410937 - MERVL LTR ERVL -1550 3935 3282 669 58 0 0 chr6 34004364 34004450 -148410792 + (CA)n Simple_repeat Simple_repeat 1 86 0 302 270 40 40 chr6 34005167 34005293 -148409949 + L1ME LINE L1 12 137 -5933 230 336 0 27 chr6 34005524 34005634 -148409608 + L1ME LINE L1 372 478 -5592 2187 170 44 32 chr6 34005862 34006120 -148409122 - MSTB LTR MaLR -2 424 157 2287 96 0 0 chr6 34006120 34006431 -148408811 + AluSg SINE Alu 1 311 0 2187 170 44 32 chr6 34006431 34006582 -148408660 - MSTB LTR MaLR -269 157 9 597 288 81 31 chr6 34006783 34007377 -148407865 + L1ME LINE L1 455 1078 -4900 2799 99 5 5 chr6 34007557 34007951 -148407291 - L1PA13 LINE L1 0 6163 5770 13258 182 9 24 chr6 34007951 34008691 -148406551 + L1PB2 LINE L1 2315 3064 -3087 2208 128 0 0 chr6 34008691 34008987 -148406255 + AluSx SINE Alu 3 298 -14 13258 182 9 24 chr6 34008987 34010776 -148404466 + L1PB2 LINE L1 3064 4763 -1388 2209 124 0 10 chr6 34010776 34011083 -148404159 + AluSq SINE Alu 1 304 -9 13258 182 9 24 chr6 34011083 34012452 -148402790 + L1PB2 LINE L1 4763 6151 0 201 39 0 0 chr6 34012466 34012492 -148402750 + (CAA)n Simple_repeat Simple_repeat 2 27 0 671 274 29 36 chr6 34012500 34012774 -148402468 + L1ME LINE L1 4353 4624 -1456 876 250 15 0 chr6 34012823 34013023 -148402219 - AluJo SINE Alu -92 220 18 1047 208 68 30 chr6 34013238 34013656 -148401586 - L1M3 LINE L1 -615 5565 5130 185 83 28 0 chr6 34013903 34013939 -148401303 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr6 34014504 34014525 -148400717 + AT_rich Low_complexity Low_complexity 1 21 0 805 219 0 12 chr6 34014840 34015000 -148400242 - MER90 LTR ERV1 0 575 418 1631 238 76 52 chr6 34015009 34015564 -148399678 - MER74A LTR ERVL -3 619 1 1209 258 164 0 chr6 34015584 34015937 -148399305 - MER90 LTR ERV1 -198 416 6 426 308 13 80 chr6 34016069 34016224 -148399018 + L1ME LINE L1 5389 5553 -502 2113 125 0 0 chr6 34016224 34016511 -148398731 - AluSx SINE Alu -25 287 1 426 308 13 80 chr6 34016511 34016601 -148398641 + L1ME LINE L1 5553 5611 -444 2293 104 0 3 chr6 34016601 34016900 -148398342 + AluSg SINE Alu 1 298 -12 426 308 13 80 chr6 34016900 34016965 -148398277 + L1ME LINE L1 5611 5679 -376 310 330 98 8 chr6 34017580 34017977 -148397265 + HAL1 LINE L1 983 1415 -1092 330 107 0 0 chr6 34019793 34019849 -148395393 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 256 173 53 27 chr6 34019854 34019929 -148395313 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 209 195 0 0 chr6 34021393 34021434 -148393808 + (TG)n Simple_repeat Simple_repeat 2 42 0 3304 141 30 21 chr6 34022019 34022857 -148392385 - L1M1 LINE L1 -673 5630 4791 820 148 0 0 chr6 34022858 34022980 -148392262 - FLAM_C SINE Alu -21 122 1 207 100 0 0 chr6 34023180 34023210 -148392032 + (T)n Simple_repeat Simple_repeat 1 30 0 6733 125 39 7 chr6 34023304 34024401 -148390841 - Tigger3b DNA MER2_type -1 1230 99 289 268 55 28 chr6 34024787 34024941 -148390301 + L1MEc LINE L1 1371 1481 -4942 399 300 56 12 chr6 34025024 34025274 -148389968 + L1M4 LINE L1 3310 3570 -2576 1569 185 14 76 chr6 34025289 34025656 -148389586 + MER2 DNA MER2_type 2 345 0 1716 86 0 9 chr6 34025681 34025891 -148389351 + AluSq SINE Alu 1 208 -105 1427 204 14 84 chr6 34025998 34026355 -148388887 + MER41C-int LTR ERV1 2341 2672 -1519 854 129 15 0 chr6 34026355 34026487 -148388755 + MSTA LTR MaLR 1 134 -294 382 281 0 0 chr6 34026586 34026668 -148388574 + FLAM_A SINE Alu 16 97 -36 4799 212 56 35 chr6 34026710 34027032 -148388210 + MER41C-int LTR ERV1 2727 3041 -1150 4711 161 14 4 chr6 34027032 34027807 -148387435 - LTR39 LTR ERV1 0 783 1 4799 212 56 35 chr6 34027807 34028705 -148386537 + MER41C-int LTR ERV1 3041 3972 -219 237 241 36 48 chr6 34028732 34028815 -148386427 + MER21B LTR ERV1 384 465 -398 754 212 109 73 chr6 34028816 34029154 -148386088 + MSTD LTR MaLR 1 348 -17 2054 130 0 60 chr6 34029165 34029518 -148385724 + MER1B DNA MER1_type 1 332 -7 1514 180 48 73 chr6 34029573 34030085 -148385157 + MER4A LTR ERV1 1 521 -76 929 147 0 0 chr6 34030090 34030285 -148384957 + HERVK14 LTR ERVK 5235 5579 -366 * 1417 151 0 9 chr6 34030283 34030315 -148384927 + MER41C-int LTR ERV1 7541 7756 0 1490 70 0 5 chr6 34030315 34030501 -148384741 + HERVK14 LTR ERVK 5575 5759 -186 357 186 0 18 chr6 34030501 34030576 -148384666 + MER41C LTR ERV1 1 61 -493 401 60 0 0 chr6 34030576 34030626 -148384616 + HERVK14 LTR ERVK 5835 5884 -61 1269 139 25 10 chr6 34030651 34030852 -148384390 + LTR3b LTR ERVK 158 361 -139 9376 105 2 0 chr6 34030873 34032110 -148383132 + THE1A-int LTR MaLR 342 1580 0 2140 147 14 8 chr6 34032110 34032463 -148382779 + THE1A LTR MaLR 1 355 0 1810 268 76 13 chr6 34032464 34033075 -148382167 - L1MDa LINE L1 -2499 4041 3371 2950 144 28 18 chr6 34033075 34033575 -148381667 - LTR10B LTR ERV1 0 505 1 1810 268 76 13 chr6 34033575 34033723 -148381519 - L1MDa LINE L1 -3169 3371 3234 1744 222 17 0 chr6 34033733 34034085 -148381157 - MLT1A1 LTR MaLR -1 364 7 1519 267 68 21 chr6 34034095 34034663 -148380579 - L1MDa LINE L1 -3313 3227 2615 3078 111 4 38 chr6 34034663 34035072 -148380170 + L1PA13 LINE L1 5684 6075 -88 6508 112 20 13 chr6 34035072 34036019 -148379223 + LTR13 LTR ERVK 1 954 0 3078 111 4 38 chr6 34036019 34036106 -148379136 + L1PA13 LINE L1 6075 6163 0 1519 267 68 21 chr6 34036106 34036283 -148378959 - L1MDa LINE L1 -3925 2615 2448 5429 221 47 16 chr6 34036288 34037857 -148377385 + L1MEc LINE L1 1515 4283 -1932 308 189 0 0 chr6 34037870 34037923 -148377319 - L1M1 LINE L1 -6265 1300 1248 2276 137 8 32 chr6 34037965 34038338 -148376904 - THE1B LTR MaLR 0 364 1 246 238 16 0 chr6 34043118 34043181 -148372061 + MIR SINE MIR 102 165 -97 568 87 33 0 chr6 34044065 34044157 -148371085 + L1PB1 LINE L1 6056 6150 -1 2286 107 0 0 chr6 34044174 34044473 -148370769 + AluSg SINE Alu 1 299 -11 1030 266 51 34 chr6 34044477 34044985 -148370257 - L1M4 LINE L1 -2045 4101 3585 1645 168 19 74 chr6 34044986 34045350 -148369892 - MER2 DNA MER2_type -1 344 1 337 314 25 29 chr6 34045361 34045603 -148369639 - L1M4 LINE L1 -2578 3568 3328 2960 40 0 0 chr6 34045793 34046145 -148369097 - L1PA4 LINE L1 -5 6150 5799 409 21 0 0 chr6 34046145 34046192 -148369050 + L1PA4 LINE L1 5757 5803 -351 266 0 29 0 chr6 34046383 34046417 -148368825 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 7728 27 6 0 chr6 34046418 34047687 -148367555 - L1PA3 LINE L1 -11 6144 4873 194 62 31 0 chr6 34048402 34048434 -148366808 + (CA)n Simple_repeat Simple_repeat 2 34 0 3561 155 80 1 chr6 34048447 34049124 -148366118 + Tigger3b DNA MER2_type 1 730 -501 8502 165 16 1 chr6 34049124 34050611 -148364631 + L1PA11 LINE L1 2605 4112 -2034 6722 133 28 0 chr6 34050637 34051017 -148364225 + L1PA11 LINE L1 4262 4630 -1544 2311 103 0 3 chr6 34051017 34051309 -148363933 - AluSg SINE Alu -19 291 1 6722 133 28 0 chr6 34051309 34052837 -148362405 + L1PA11 LINE L1 4630 6173 -1 1569 86 37 29 chr6 34052839 34053084 -148362158 + Tigger3b DNA MER2_type 724 970 -262 2553 186 31 99 chr6 34053108 34053786 -148361456 - MER21B LTR ERV1 -14 849 218 894 239 15 15 chr6 34053789 34054049 -148361193 + L1 LINE L1 4214 4473 -1673 * 28823 55 2 1 chr6 34054048 34060198 -148355044 + L1PA6 LINE L1 2 6154 0 203 133 44 0 chr6 34060217 34060262 -148354980 + (TA)n Simple_repeat Simple_repeat 1 47 0 7016 168 33 10 chr6 34060264 34061637 -148353605 + L1 LINE L1 2908 4311 -1835 953 177 0 51 chr6 34061637 34061654 -148353588 + AluJb SINE Alu 125 141 -171 1207 211 70 35 chr6 34061654 34061938 -148353304 + AluJo SINE Alu 1 294 -18 953 177 0 51 chr6 34061938 34062095 -148353147 + AluJb SINE Alu 141 290 -22 381 22 0 0 chr6 34063731 34063777 -148351465 + (TC)n Simple_repeat Simple_repeat 1 46 0 503 257 202 36 chr6 34063785 34064205 -148351037 + L2 LINE L2 1218 1707 -1607 666 191 24 0 chr6 34064358 34064370 -148350872 - FLAM_C SINE Alu -182 130 120 210 37 0 0 chr6 34064370 34064397 -148350845 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 666 191 24 0 chr6 34064397 34064510 -148350732 - FLAM_C SINE Alu -192 120 2 325 304 43 19 chr6 34065305 34065466 -148349776 - L1MC/D LINE L1 -2029 5779 5615 1604 140 92 15 chr6 34065516 34065787 -148349455 - AluJb SINE Alu -20 292 1 1300 252 34 13 chr6 34066058 34066599 -148348643 + MER90 LTR ERV1 1 559 -16 534 167 74 0 chr6 34067435 34067543 -148347699 + Charlie1 DNA MER1_type 2164 2279 -482 1341 180 4 4 chr6 34067543 34067787 -148347455 - L1 LINE L1 -2011 4135 3892 375 78 0 0 chr6 34067790 34067841 -148347401 + (GA)n Simple_repeat Simple_repeat 2 52 0 196 222 19 0 chr6 34068219 34068273 -148346969 - MIR SINE MIR -72 136 82 225 0 0 0 chr6 34068564 34068589 -148346653 + (A)n Simple_repeat Simple_repeat 1 25 0 380 231 37 15 chr6 34068600 34068734 -148346508 + L1ME3A LINE L1 5265 5401 -958 728 43 0 0 chr6 34068734 34068828 -148346414 + AluY SINE Alu 212 305 -6 1290 143 103 53 chr6 34068830 34069131 -148346111 + L1ME3A LINE L1 5392 5707 -652 198 0 0 0 chr6 34069149 34069171 -148346071 + (A)n Simple_repeat Simple_repeat 1 22 0 268 235 139 42 chr6 34069409 34069575 -148345667 + L1ME3A LINE L1 5988 6169 -1 261 160 0 40 chr6 34070336 34070386 -148344856 - MLT2B1 LTR ERVL 0 520 473 740 236 16 16 chr6 34070386 34070568 -148344674 - MLT2D LTR ERVL -232 182 1 568 188 116 0 chr6 34071421 34071533 -148343709 + FLAM_C SINE Alu 3 127 -16 180 295 26 0 chr6 34072121 34072199 -148343043 - MIR3 SINE MIR -43 165 86 495 312 59 21 chr6 34072629 34073004 -148342238 + HAL1 LINE L1 1841 2229 -278 2260 212 35 17 chr6 34077963 34078486 -148336756 - L1MC3 LINE L1 -1 7784 7249 1115 244 123 51 chr6 34078486 34078957 -148336285 - MLT1D LTR MaLR 0 505 1 2260 212 35 17 chr6 34078957 34078976 -148336266 - L1MC3 LINE L1 -536 7249 7232 287 222 19 130 chr6 34079447 34079609 -148335633 + HUERS-P3 LTR ERV1 633 776 -4095 756 158 0 25 chr6 34079622 34079742 -148335500 + AluJo/FLAM SINE Alu 10 126 -186 1961 142 3 16 chr6 34079745 34080062 -148335180 + AluSp SINE Alu 1 313 0 2291 96 3 6 chr6 34080189 34080501 -148334741 + AluY SINE Alu 1 311 0 1798 91 4 21 chr6 34080715 34080957 -148334285 - AluSx SINE Alu -11 301 64 2609 124 36 14 chr6 34081027 34081446 -148333796 - MSTA LTR MaLR 0 428 1 398 334 52 36 chr6 34081569 34082045 -148333197 + HUERS-P3 LTR ERV1 2546 2708 -4093 3620 165 20 28 chr6 34082250 34082382 -148332860 + L1M1 LINE L1 3076 3208 -4357 1464 216 0 10 chr6 34082382 34082673 -148332569 + AluJb SINE Alu 1 288 -24 3620 165 20 28 chr6 34082673 34083819 -148331423 + L1M1 LINE L1 3208 4350 -3215 1421 199 42 42 chr6 34083822 34084153 -148331089 + L1PB1 LINE L1 13 343 -7222 215 77 0 26 chr6 34085110 34085149 -148330093 + (CAA)n Simple_repeat Simple_repeat 2 39 0 494 301 102 39 chr6 34085209 34085780 -148329462 + HAL1 LINE L1 1841 2447 -60 902 120 0 51 chr6 34090629 34090787 -148324455 - AluSg/x SINE Alu -42 270 121 216 0 0 0 chr6 34090787 34090811 -148324431 + (T)n Simple_repeat Simple_repeat 1 24 0 530 148 0 0 chr6 34090811 34090899 -148324343 - AluJb SINE Alu -179 133 46 244 104 0 0 chr6 34092100 34092148 -148323094 - LTR66 LTR ERVL -169 441 394 1044 159 0 0 chr6 34092154 34092386 -148322856 + (TA)n Simple_repeat Simple_repeat 2 233 0 2582 27 0 7 chr6 34095082 34095394 -148319848 - AluYa5 SINE Alu 0 311 1 15151 197 13 21 chr6 34095394 34095982 -148319260 + L1PB1 LINE L1 2652 3243 -4327 2362 97 7 0 chr6 34095982 34096281 -148318961 - AluY SINE Alu -9 302 2 15151 197 13 21 chr6 34096281 34097328 -148317914 + L1PB1 LINE L1 3243 4296 -3274 2028 139 0 17 chr6 34097328 34097629 -148317613 + AluSx SINE Alu 7 302 -10 15151 197 13 21 chr6 34097629 34098211 -148317031 + L1PB1 LINE L1 4296 4881 -2689 7884 48 3 11 chr6 34098211 34099763 -148315479 + SVA Other Other 1 1383 -3 15151 197 13 21 chr6 34099763 34099783 -148315459 + L1PB1 LINE L1 4881 4900 -2670 2326 94 0 25 chr6 34099783 34100103 -148315139 + AluSp SINE Alu 1 312 -1 15151 197 13 21 chr6 34100103 34100336 -148314906 + L1PB1 LINE L1 4900 5133 -2437 2387 84 3 0 chr6 34100336 34100632 -148314610 + AluSp SINE Alu 1 297 -16 15151 197 13 21 chr6 34100632 34100852 -148314390 + L1PB1 LINE L1 5133 5353 -2217 2183 85 31 7 chr6 34100852 34101146 -148314096 + AluY SINE Alu 1 301 -10 15151 197 13 21 chr6 34101146 34103337 -148311905 + L1PB1 LINE L1 5353 7570 0 1371 189 94 103 chr6 34103368 34103922 -148311320 + L1M4 LINE L1 4477 5025 -1121 845 158 43 0 chr6 34103974 34104158 -148311084 - Charlie5 DNA MER1_type -49 2563 2372 506 335 71 18 chr6 34104571 34104908 -148310334 + L2 LINE L2 2959 3313 0 2073 222 42 10 chr6 34106352 34106857 -148308385 - L1MC3 LINE L1 -16 7769 7249 855 187 143 118 chr6 34106876 34107240 -148308002 - MLT1D LTR MaLR -17 373 1 237 272 64 48 chr6 34107566 34107772 -148307470 - MER54B LTR ERVL -541 252 67 266 121 30 121 chr6 34107823 34107889 -148307353 + MER65-int LTR ERV1 713 772 -4099 754 130 0 82 chr6 34107906 34108052 -148307190 + FLAM_C SINE Alu 10 143 0 2377 74 3 0 chr6 34108495 34108805 -148306437 + AluY SINE Alu 1 311 0 3112 106 19 6 chr6 34108812 34108923 -148306319 + L1PB1 LINE L1 5674 5782 -369 306 107 0 0 chr6 34108923 34108979 -148306263 + (TA)n Simple_repeat Simple_repeat 1 56 0 3112 106 19 6 chr6 34108979 34109337 -148305905 + L1PB1 LINE L1 5782 6149 -2 23 0 0 0 chr6 34109339 34109362 -148305880 + AT_rich Low_complexity Low_complexity 1 23 0 365 186 12 12 chr6 34109395 34109481 -148305761 + Charlie1 DNA MER1_type 2264 2349 -412 953 145 0 0 chr6 34109484 34109636 -148305606 + FRAM SINE Alu 2 153 -23 266 221 66 49 chr6 34110664 34110786 -148304456 + Charlie1 DNA MER1_type 2285 2408 -353 1853 126 32 0 chr6 34110797 34111082 -148304160 + L1PA16 LINE L1 5849 6142 -24 1695 87 12 8 chr6 34111082 34111324 -148303918 - AluSp SINE Alu -1 312 70 274 30 0 0 chr6 34111324 34111357 -148303885 - AluSp SINE Alu -268 33 1 22 35 0 0 chr6 34111369 34111398 -148303844 + AT_rich Low_complexity Low_complexity 1 29 0 291 342 59 21 chr6 34111729 34111966 -148303276 - MER41B LTR ERV1 -209 426 181 2066 109 10 16 chr6 34112009 34112321 -148302921 - AluSg SINE Alu 0 310 1 523 132 44 172 chr6 34112327 34112386 -148302856 + Charlie1 DNA MER1_type 2524 2589 -172 1760 79 0 0 chr6 34112386 34112613 -148302629 + AluSc SINE Alu 67 293 -16 523 132 44 172 chr6 34112613 34112767 -148302475 + Charlie1 DNA MER1_type 2589 2697 -64 1983 82 4 4 chr6 34112767 34113035 -148302207 - AluSp SINE Alu -45 268 1 523 132 44 172 chr6 34113035 34113093 -148302149 + Charlie1 DNA MER1_type 2697 2761 0 21 0 0 0 chr6 34113404 34113425 -148301817 + GC_rich Low_complexity Low_complexity 1 21 0 2107 91 0 24 chr6 34115567 34115863 -148299379 - AluSg SINE Alu -21 289 1 2006 112 0 13 chr6 34116774 34117087 -148298155 + AluY SINE Alu 1 309 -2 1325 107 141 0 chr6 34117276 34117482 -148297760 + MSTC LTR MaLR 1 235 -193 1041 240 20 20 chr6 34117482 34117837 -148297405 + MSTD-int LTR MaLR 1010 1325 -326 228 303 45 0 chr6 34118190 34118279 -148296963 + MIR SINE MIR 43 135 -73 614 228 29 7 chr6 34118335 34118471 -148296771 + MSTD LTR MaLR 1 139 -257 724 244 70 0 chr6 34118501 34118673 -148296569 + MSTD LTR MaLR 206 389 -7 2168 106 3 0 chr6 34118789 34119082 -148296160 - AluSq SINE Alu -12 301 8 239 323 110 16 chr6 34119333 34119460 -148295782 - L2 LINE L2 -9 3304 3166 3240 98 121 0 chr6 34119540 34120010 -148295232 - MER1A DNA MER1_type 0 527 1 2145 95 3 7 chr6 34120889 34121305 -148293937 + AluSp SINE Alu 3 417 0 8432 78 17 5 chr6 34121918 34123096 -148292146 - SVA Other Other 0 1386 195 196 279 32 110 chr6 34123157 34123197 -148292045 + MIR SINE MIR 65 107 -155 2339 83 3 3 chr6 34123197 34123510 -148291732 - AluSp SINE Alu 0 313 1 196 279 32 110 chr6 34123510 34123623 -148291619 + MIR SINE MIR 107 206 -56 2112 116 0 0 chr6 34123735 34124038 -148291204 - AluY SINE Alu -8 303 1 24 0 0 0 chr6 34125179 34125203 -148290039 + AT_rich Low_complexity Low_complexity 1 24 0 2307 93 7 0 chr6 34125554 34125864 -148289378 - AluSx SINE Alu 0 312 1 2407 48 10 0 chr6 34125870 34126165 -148289077 - AluY SINE Alu -13 298 1 21 57 0 0 chr6 34126327 34126362 -148288880 + AT_rich Low_complexity Low_complexity 1 35 0 2200 100 0 3 chr6 34126973 34127272 -148287970 - AluSc SINE Alu -11 298 1 2415 61 0 0 chr6 34127511 34127804 -148287438 + AluY SINE Alu 1 293 -18 2109 122 3 0 chr6 34128289 34128592 -148286650 - AluSp SINE Alu -9 304 1 971 119 0 0 chr6 34128809 34128943 -148286299 + AluSx SINE Alu 1 134 -178 2236 98 3 3 chr6 34128944 34129249 -148285993 + AluSq SINE Alu 1 305 -8 1067 141 0 0 chr6 34129309 34129465 -148285777 + AluSx SINE Alu 119 274 -36 201 74 0 0 chr6 34129475 34129502 -148285740 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1173 130 0 22 chr6 34130094 34130254 -148284988 - AluSg/x SINE Alu -19 291 134 2089 103 9 28 chr6 34130254 34130456 -148284786 - AluSp SINE Alu 0 313 118 2132 94 0 38 chr6 34130456 34130774 -148284468 - AluSx SINE Alu -6 306 1 2089 103 9 28 chr6 34130774 34130890 -148284352 - AluSp SINE Alu -195 118 1 1173 130 0 22 chr6 34130890 34130913 -148284329 - AluSg/x SINE Alu -176 134 112 451 111 0 100 chr6 34130915 34130992 -148284250 + AluJ/FRAM SINE Alu 227 295 -17 2118 122 3 0 chr6 34130992 34131303 -148283939 + AluSx SINE Alu 1 312 0 451 111 0 100 chr6 34131303 34131315 -148283927 + AluJ/FRAM SINE Alu 295 307 -5 191 276 10 0 chr6 34131464 34131562 -148283680 + (TG)n Simple_repeat Simple_repeat 1 99 0 1610 270 111 15 chr6 34132133 34132674 -148282568 + MLT1E LTR MaLR 1 593 0 1835 138 16 13 chr6 34133405 34133580 -148281662 - AluSx SINE Alu -6 306 128 255 31 0 0 chr6 34133580 34133612 -148281630 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1835 138 16 13 chr6 34133612 34133740 -148281502 - AluSx SINE Alu -184 128 2 270 160 128 43 chr6 34134151 34134245 -148280997 + L1MC5 LINE L1 7834 7935 -26 856 155 0 0 chr6 34134264 34134393 -148280849 + FLAM_C SINE Alu 1 129 -4 1108 218 123 3 chr6 34134420 34134705 -148280537 + L1MD3 LINE L1 6783 7101 -894 579 291 69 52 chr6 34134731 34135150 -148280092 + L1M4 LINE L1 810 1235 -5620 920 83 0 0 chr6 34135178 34135298 -148279944 + AluSp/q SINE Alu 175 294 -19 291 225 0 79 chr6 34135316 34135405 -148279837 + L1M4 LINE L1 1205 1286 -5573 * 684 277 39 9 chr6 34135402 34135633 -148279609 + L1M4 LINE L1 1216 1453 -5406 1968 135 7 0 chr6 34135633 34135930 -148279312 + AluSx SINE Alu 1 299 -13 455 245 27 161 chr6 34135932 34136110 -148279132 + L1M4 LINE L1 1985 2185 -4774 2242 95 3 0 chr6 34136110 34136404 -148278838 + AluSg SINE Alu 1 295 -15 455 245 27 161 chr6 34136404 34136515 -148278727 + L1M4 LINE L1 2185 2198 -4761 1659 159 0 53 chr6 34136515 34136835 -148278407 + AluJo SINE Alu 10 312 0 455 245 27 161 chr6 34136835 34136985 -148278257 + L1M4 LINE L1 2198 2366 -4593 979 157 0 0 chr6 34137018 34137171 -148278071 + AluSg/x SINE Alu 133 285 -25 909 180 6 17 chr6 34137278 34137456 -148277786 - FRAM SINE Alu -7 169 1 1645 147 0 0 chr6 34137750 34138009 -148277233 + AluSx SINE Alu 1 259 -53 634 101 10 20 chr6 34138060 34138159 -148277083 + MER4A LTR ERV1 1 98 -566 1876 109 8 78 chr6 34138160 34138234 -148277008 + MER4A LTR ERV1 264 342 -322 2172 98 0 13 chr6 34138234 34138541 -148276701 + AluSx SINE Alu 1 303 -9 1876 109 8 78 chr6 34138541 34138834 -148276408 + MER4A LTR ERV1 342 664 0 413 19 19 0 chr6 34139428 34139482 -148275760 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2277 65 7 10 chr6 34139482 34139788 -148275454 - AluSp SINE Alu -8 305 1 1611 133 6 91 chr6 34140503 34140833 -148274409 - AluSx SINE Alu -10 302 1 189 0 0 0 chr6 34140833 34140854 -148274388 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1963 115 4 4 chr6 34140856 34141134 -148274108 - AluSx SINE Alu -32 280 3 2122 121 7 0 chr6 34141164 34141471 -148273771 - AluSq SINE Alu -4 309 1 324 167 23 0 chr6 34141481 34141552 -148273690 - AluJb SINE Alu -2 300 240 789 223 4 51 chr6 34141560 34141833 -148273409 + pTR5 LTR ERV1 769 1028 -1410 4612 78 11 211 chr6 34141915 34142948 -148272294 + LTR12 LTR ERV1 1 826 0 1478 146 8 4 chr6 34142948 34143188 -148272054 - AluJb SINE Alu -71 241 1 2072 121 3 0 chr6 34143483 34143781 -148271461 - AluSq SINE Alu -14 299 1 36304 89 20 24 chr6 34144569 34148158 -148267084 + L1PA6 LINE L1 22 3654 -2500 249 211 13 53 chr6 34148158 34148234 -148267008 - MSTB2 LTR MaLR -249 208 136 36304 89 20 24 chr6 34148234 34150724 -148264518 + L1PA6 LINE L1 3654 6152 -2 786 219 62 80 chr6 34150743 34150873 -148264369 - Charlie7 DNA MER1_type -81 2531 2400 2366 77 0 3 chr6 34150873 34151184 -148264058 + AluSg SINE Alu 1 310 0 786 219 62 80 chr6 34151184 34151391 -148263851 - Charlie7 DNA MER1_type -212 2400 2203 2155 77 44 7 chr6 34151391 34151689 -148263553 + AluY SINE Alu 3 311 0 786 219 62 80 chr6 34151689 34151835 -148263407 - Charlie7 DNA MER1_type -409 2203 2056 187 324 56 0 chr6 34152160 34152231 -148263011 + MIR SINE MIR 113 187 -75 2589 48 0 0 chr6 34152234 34152545 -148262697 + AluY SINE Alu 1 311 0 742 156 39 0 chr6 34152569 34152697 -148262545 + FLAM_C SINE Alu 11 143 0 2149 97 3 3 chr6 34153117 34153426 -148261816 + AluSq SINE Alu 1 309 -4 2155 131 67 6 chr6 34153690 34154048 -148261194 + LTR8A LTR ERV1 2 381 -346 1008 162 28 0 chr6 34154051 34154230 -148261012 - AluJo SINE Alu -10 302 119 821 150 0 0 chr6 34154265 34154398 -148260844 - AluJo SINE Alu -179 133 1 1217 177 71 77 chr6 34154398 34154568 -148260674 + LTR8A LTR ERV1 379 548 -179 1442 175 102 0 chr6 34154568 34154842 -148260400 - AluJo SINE Alu -10 302 1 1217 177 71 77 chr6 34154842 34155022 -148260220 + LTR8A LTR ERV1 548 727 0 2242 92 0 0 chr6 34155208 34155502 -148259740 - AluSx SINE Alu -18 294 1 302 258 82 0 chr6 34155523 34155620 -148259622 + L1ME4a LINE L1 5533 5637 -484 788 177 17 57 chr6 34155627 34155802 -148259440 - MLT1A1 LTR MaLR 0 365 198 1806 133 9 22 chr6 34155804 34156199 -148259043 - AluJo SINE Alu 0 391 1 729 190 89 17 chr6 34156217 34156396 -148258846 - MLT1A1 LTR MaLR -182 192 1 1625 164 14 17 chr6 34156459 34156646 -148258596 - AluJb SINE Alu 0 312 136 2298 91 0 0 chr6 34156646 34156943 -148258299 - AluSg SINE Alu -13 297 1 1625 164 14 17 chr6 34156943 34157075 -148258167 - AluJb SINE Alu -176 136 5 368 236 101 104 chr6 34157149 34157414 -148257828 + L1ME4a LINE L1 5761 6026 -95 2017 111 0 35 chr6 34157414 34157730 -148257512 - AluSx SINE Alu -7 305 1 368 236 101 104 chr6 34157730 34157752 -148257490 + L1ME4a LINE L1 6026 6047 -74 1574 173 91 58 chr6 34157755 34157784 -148257458 - MLT2D LTR ERVL -4 410 383 231 36 0 0 chr6 34157784 34157812 -148257430 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1574 173 91 58 chr6 34157812 34158176 -148257066 - MLT2D LTR ERVL -31 383 4 206 230 0 11 chr6 34158258 34158345 -148256897 + (TA)n Simple_repeat Simple_repeat 1 86 0 1858 169 125 0 chr6 34158376 34158744 -148256498 + MLT2D LTR ERVL 1 414 0 276 303 92 32 chr6 34158903 34159088 -148256154 - L2 LINE L2 -252 3061 2866 1049 158 19 0 chr6 34159155 34159313 -148255929 - AluJb SINE Alu -15 297 137 2184 124 0 3 chr6 34159316 34159615 -148255627 - AluSx SINE Alu -14 298 1 863 245 108 99 chr6 34159619 34159919 -148255323 + L1MC4a LINE L1 6411 6707 -1101 2417 88 3 0 chr6 34159919 34160224 -148255018 + AluY SINE Alu 1 306 -5 863 245 108 99 chr6 34160224 34160237 -148255005 + L1MC4a LINE L1 6707 6718 -1090 2102 148 3 22 chr6 34160237 34160555 -148254687 + AluSx SINE Alu 1 312 0 863 245 108 99 chr6 34160555 34160714 -148254528 + L1MC4a LINE L1 6718 6888 -920 1764 103 0 0 chr6 34160726 34160950 -148254292 + AluSc SINE Alu 76 299 -10 233 240 27 0 chr6 34160950 34161025 -148254217 + L1MC4 LINE L1 6962 7038 -1004 1653 138 83 0 chr6 34161040 34161293 -148253949 + AluJb SINE Alu 24 297 -15 292 181 103 43 chr6 34161313 34161429 -148253813 + L1MC5 LINE L1 6940 7062 -899 644 96 0 0 chr6 34161447 34161530 -148253712 + AluS SINE Alu 2 84 -229 564 242 97 118 chr6 34161555 34162176 -148253066 + L1MC4 LINE L1 7098 7730 -312 319 123 0 0 chr6 34162176 34162233 -148253009 + L1MA8 LINE L1 6225 6281 -10 564 242 97 118 chr6 34162233 34162396 -148252846 + L1MC4 LINE L1 7730 7867 -175 2239 122 0 3 chr6 34162396 34162692 -148252550 - AluSx SINE Alu -17 295 1 564 242 97 118 chr6 34162692 34162719 -148252523 + L1MC4 LINE L1 7867 7893 -149 2057 124 0 0 chr6 34162731 34163005 -148252237 + AluSx SINE Alu 24 297 -15 3026 163 19 74 chr6 34163014 34163126 -148252116 + L1MA7 LINE L1 5510 5627 -670 2418 100 0 0 chr6 34163126 34163426 -148251816 + AluSq SINE Alu 1 300 -13 3026 163 19 74 chr6 34163426 34163603 -148251639 + L1MA7 LINE L1 5627 5812 -485 2453 87 0 3 chr6 34163603 34163915 -148251327 + AluY SINE Alu 1 311 0 3026 163 19 74 chr6 34163915 34164381 -148250861 + L1MA7 LINE L1 5812 6180 -117 2523 61 0 3 chr6 34164381 34164677 -148250565 + AluSq SINE Alu 1 295 -18 3026 163 19 74 chr6 34164677 34164780 -148250462 + L1MA7 LINE L1 6180 6287 -10 21 0 0 0 chr6 34164792 34164813 -148250429 + AT_rich Low_complexity Low_complexity 1 21 0 377 231 149 15 chr6 34164845 34164979 -148250263 + L1MC4 LINE L1 7891 8042 0 29 47 0 0 chr6 34165160 34165203 -148250039 + AT_rich Low_complexity Low_complexity 1 43 0 446 312 246 22 chr6 34165598 34166904 -148248338 + L2 LINE L2 1494 3085 -187 255 343 206 9 chr6 34167006 34167239 -148248003 + L2 LINE L2 2994 3272 0 275 297 0 0 chr6 34169264 34169328 -148245914 + L2 LINE L2 3242 3305 -8 336 172 0 91 chr6 34169903 34170002 -148245240 + CT-rich Low_complexity Low_complexity 2 91 0 340 309 127 34 chr6 34170157 34170184 -148245058 - MIR SINE MIR 0 262 239 213 39 0 0 chr6 34170184 34170210 -148245032 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 340 309 127 34 chr6 34170210 34170418 -148244824 - MIR SINE MIR -23 239 5 590 266 133 5 chr6 34171393 34171611 -148243631 + MIR SINE MIR 1 246 -16 2352 91 0 19 chr6 34171644 34171951 -148243291 + AluSq SINE Alu 1 301 -12 1139 273 96 13 chr6 34172036 34172486 -148242756 + L2 LINE L2 720 1206 -2108 286 205 171 26 chr6 34172536 34172653 -148242589 + L2 LINE L2 1705 1838 -1476 2083 141 3 3 chr6 34172749 34173054 -148242188 - AluSx SINE Alu -7 305 1 294 306 10 0 chr6 34173165 34173263 -148241979 - L1ME3A LINE L1 -208 5962 5864 2776 251 140 36 chr6 34173277 34173582 -148241660 + L2 LINE L2 1826 2098 -1215 2193 117 7 7 chr6 34173582 34173882 -148241360 - AluSx SINE Alu -12 300 1 2776 251 140 36 chr6 34173882 34174900 -148240342 + L2 LINE L2 2098 3313 0 246 264 104 9 chr6 34175436 34175542 -148239700 + MIR SINE MIR 145 260 -2 290 304 78 46 chr6 34175544 34175628 -148239614 - MIR SINE MIR 0 262 182 1874 163 14 10 chr6 34175628 34175922 -148239320 - AluJo SINE Alu -17 295 1 290 304 78 46 chr6 34175922 34176063 -148239179 - MIR SINE MIR -80 182 34 256 208 21 0 chr6 34176496 34176544 -148238698 - MER91 DNA MER1_type -73 67 19 374 357 7 0 chr6 34177656 34177810 -148237432 + (TATG)n Simple_repeat Simple_repeat 2 156 0 222 227 76 30 chr6 34177876 34177942 -148237300 - MIR SINE MIR -187 75 7 21 57 0 0 chr6 34180017 34180052 -148235190 + GC_rich Low_complexity Low_complexity 1 35 0 1296 264 123 37 chr6 34182075 34182300 -148232942 + L1MB2 LINE L1 4494 4698 -1466 851 163 0 15 chr6 34182300 34182435 -148232807 + FLAM_A SINE Alu 1 133 0 1296 264 123 37 chr6 34182435 34182852 -148232390 + L1MB2 LINE L1 4698 5225 -939 2409 85 7 3 chr6 34182852 34183157 -148232085 + AluSg SINE Alu 1 306 -4 1296 264 123 37 chr6 34183157 34183405 -148231837 + L1MB2 LINE L1 5225 5450 -714 2942 128 66 80 chr6 34183406 34183839 -148231403 + L1MB2 LINE L1 5515 5952 -219 2212 120 13 0 chr6 34183839 34184138 -148231104 + AluSx SINE Alu 1 303 -9 2942 128 66 80 chr6 34184138 34184259 -148230983 + L1MB2 LINE L1 5952 6061 -110 2437 88 0 0 chr6 34184259 34184555 -148230687 + AluSg SINE Alu 1 296 -14 2942 128 66 80 chr6 34184555 34184662 -148230580 + L1MB2 LINE L1 6061 6168 -3 770 179 0 0 chr6 34184675 34184787 -148230455 + FLAM_C SINE Alu 6 117 -26 2701 213 66 18 chr6 34184787 34185510 -148229732 + L1ME3A LINE L1 5409 6162 -8 180 0 0 0 chr6 34185567 34185587 -148229655 + (TC)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr6 34187407 34187439 -148227803 + (T)n Simple_repeat Simple_repeat 1 32 0 427 291 163 31 chr6 34188090 34188379 -148226863 - L2 LINE L2 -438 2876 2550 2504 73 0 6 chr6 34188481 34188794 -148226448 + AluY SINE Alu 1 311 0 228 122 143 0 chr6 34188806 34188855 -148226387 - MLT1J LTR MaLR -58 453 398 2648 55 0 3 chr6 34189045 34189353 -148225889 - AluY SINE Alu -4 307 1 892 216 226 5 chr6 34189460 34189846 -148225396 - MER90 LTR ERV1 -140 435 9 2123 120 0 13 chr6 34189950 34190249 -148224993 + AluSx SINE Alu 1 295 -17 289 296 22 59 chr6 34190293 34190428 -148224814 - L2 LINE L2 -1164 2150 2021 204 217 0 87 chr6 34190430 34190499 -148224743 - MIR SINE MIR -24 238 176 1730 63 5 5 chr6 34190525 34190731 -148224511 - AluSq SINE Alu -107 206 1 1072 269 106 44 chr6 34190739 34191137 -148224105 - L2 LINE L2 -3 3310 2938 1624 187 53 3 chr6 34191137 34191421 -148223821 + AluJo SINE Alu 1 298 -14 1072 269 106 44 chr6 34191421 34191568 -148223674 - L2 LINE L2 -375 2938 2802 2411 95 0 0 chr6 34191568 34191872 -148223370 - AluSg SINE Alu -6 304 1 1072 269 106 44 chr6 34191872 34192050 -148223192 - L2 LINE L2 -511 2802 2530 983 240 43 43 chr6 34192046 34192350 -148222892 + L2 LINE L2 2398 2701 -613 * 2449 87 0 6 chr6 34192376 34192687 -148222555 + AluSg SINE Alu 1 309 -1 816 167 0 15 chr6 34192687 34192819 -148222423 - AluJo/FLAM SINE Alu -182 130 1 2246 75 0 4 chr6 34192828 34193138 -148222104 - AluY SINE Alu 0 313 5 854 296 113 21 chr6 34193138 34193687 -148221555 + L2 LINE L2 2683 3313 0 1123 286 206 11 chr6 34193711 34194278 -148220964 - L2 LINE L2 -807 2507 1830 181 264 94 0 chr6 34194294 34194347 -148220895 - MIR SINE MIR -158 104 47 315 146 21 188 chr6 34194348 34194492 -148220750 + L1MA10 LINE L1 6215 6334 0 601 327 125 56 chr6 34196006 34196269 -148218973 - L2 LINE L2 -9 3263 3020 1759 170 11 0 chr6 34196269 34196546 -148218696 - AluJo SINE Alu -21 291 12 601 327 125 56 chr6 34196546 34197713 -148217529 - L2 LINE L2 -252 3020 1698 1399 154 75 72 chr6 34197887 34198193 -148217049 - AluJo SINE Alu -5 307 1 186 305 92 38 chr6 34198517 34198648 -148216594 - L2 LINE L2 -341 2973 2836 2340 99 7 0 chr6 34198820 34199124 -148216118 - AluSg SINE Alu -4 306 1 26 0 0 0 chr6 34199124 34199150 -148216092 + AT_rich Low_complexity Low_complexity 1 26 0 198 347 28 0 chr6 34199468 34199540 -148215702 + L2 LINE L2 2275 2348 -966 1830 182 7 19 chr6 34199544 34199851 -148215391 + AluJo SINE Alu 1 303 -9 210 318 57 66 chr6 34199893 34200033 -148215209 + L2 LINE L2 2341 2481 -833 2436 99 0 3 chr6 34200033 34200345 -148214897 - AluSx SINE Alu -1 311 1 210 318 57 66 chr6 34200345 34200528 -148214714 + L2 LINE L2 2481 2724 -590 602 310 175 28 chr6 34200567 34200989 -148214253 + L2 LINE L2 2830 3313 0 614 151 126 8 chr6 34201333 34201452 -148213790 + FLAM_C SINE Alu 1 133 0 219 69 0 0 chr6 34201641 34201670 -148213572 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2358 103 0 0 chr6 34202476 34202778 -148212464 + AluSg SINE Alu 1 302 -8 343 203 40 0 chr6 34203079 34203153 -148212089 + Tigger5 DNA MER2_type 1 77 -2246 336 203 0 0 chr6 34203153 34203212 -148212030 - Tigger5 DNA MER2_type -2 2321 2263 2558 77 0 0 chr6 34203212 34203512 -148211730 - AluSc SINE Alu -9 300 1 231 228 18 0 chr6 34203530 34203587 -148211655 + Tigger5 DNA MER2_type 2266 2323 0 2781 23 3 7 chr6 34203821 34204131 -148211111 + AluY SINE Alu 1 309 -2 1935 165 0 7 chr6 34204424 34204727 -148210515 - AluJb SINE Alu -6 306 6 808 232 79 21 chr6 34204728 34204918 -148210324 - MER58C DNA MER1_type -5 210 10 472 337 55 6 chr6 34204935 34205116 -148210126 + MIR3 SINE MIR 19 208 0 2352 109 0 0 chr6 34205155 34205457 -148209785 - AluY SINE Alu -7 304 3 2599 66 0 0 chr6 34205807 34206112 -148209130 - AluY SINE Alu -6 305 1 216 200 0 0 chr6 34206155 34206200 -148209042 + GA-rich Low_complexity Low_complexity 3 47 0 2044 151 3 0 chr6 34206451 34206749 -148208493 - AluJb SINE Alu -13 299 1 818 161 0 8 chr6 34208522 34208646 -148206596 + FLAM_C SINE Alu 1 123 -20 1224 191 5 0 chr6 34208664 34208868 -148206374 + AluJb SINE Alu 85 289 -23 1887 109 91 0 chr6 34210749 34211023 -148204219 + AluSx SINE Alu 1 299 -13 572 161 0 21 chr6 34211026 34211119 -148204123 + AluJ/FLAM SINE Alu 2 92 -220 2087 106 39 3 chr6 34211119 34211403 -148203839 + AluSp SINE Alu 1 294 -19 1522 139 9 0 chr6 34211404 34211619 -148203623 + AluSg/x SINE Alu 80 296 -14 2376 89 7 0 chr6 34211654 34211957 -148203285 - AluSg SINE Alu -5 305 1 279 221 188 19 chr6 34211957 34212111 -148203131 - L1ME4a LINE L1 -108 6013 5834 2291 90 7 0 chr6 34212126 34212414 -148202828 - AluY SINE Alu -20 291 2 255 242 33 0 chr6 34212436 34212527 -148202715 - L1ME4a LINE L1 -525 5596 5503 1835 150 24 24 chr6 34212769 34213062 -148202180 - AluSx SINE Alu -19 293 1 2067 47 0 0 chr6 34213140 34213376 -148201866 + AluY SINE Alu 63 298 -13 2180 149 7 0 chr6 34215299 34215607 -148199635 - AluSx SINE Alu -2 310 1 1566 163 63 53 chr6 34215607 34215906 -148199336 - AluJo SINE Alu -10 302 1 2176 100 21 7 chr6 34216779 34217070 -148198172 + AluSg SINE Alu 1 295 -15 548 191 63 24 chr6 34217127 34217253 -148197989 + MIR SINE MIR 85 215 -47 22 0 0 0 chr6 34217280 34217302 -148197940 + AT_rich Low_complexity Low_complexity 1 22 0 2266 111 3 0 chr6 34217302 34217600 -148197642 - AluSx SINE Alu -13 299 1 876 165 0 0 chr6 34217816 34217949 -148197293 - FLAM_C SINE Alu 0 133 1 1531 173 4 8 chr6 34218217 34218472 -148196770 - AluJo SINE Alu -16 296 43 271 274 157 57 chr6 34218483 34218802 -148196440 - L2 LINE L2 -285 2987 2630 2312 105 0 0 chr6 34218963 34219259 -148195983 + AluSp SINE Alu 1 296 -17 2125 89 43 0 chr6 34219676 34219958 -148195284 + AluSq SINE Alu 1 294 -19 2373 81 16 13 chr6 34219962 34220271 -148194971 - AluSq SINE Alu -3 310 1 2237 101 0 10 chr6 34220307 34220471 -148194771 - AluSc SINE Alu -14 295 134 2428 75 0 0 chr6 34220471 34220766 -148194476 - AluY SINE Alu -15 296 2 2237 101 0 10 chr6 34220766 34220899 -148194343 - AluSc SINE Alu -175 134 1 464 143 50 187 chr6 34221324 34221425 -148193817 + MER5A DNA MER1_type 31 144 -45 2285 123 0 19 chr6 34221425 34221743 -148193499 - AluSx SINE Alu 0 312 1 464 143 50 187 chr6 34221743 34221757 -148193485 + MER5A DNA MER1_type 144 158 -31 2472 87 6 0 chr6 34221757 34222068 -148193174 - AluSp SINE Alu 0 313 1 464 143 50 187 chr6 34222068 34222133 -148193109 + MER5A DNA MER1_type 158 187 -2 2110 96 53 0 chr6 34222218 34222500 -148192742 - AluSq SINE Alu -16 297 1 848 209 12 117 chr6 34222570 34222819 -148192423 - AluJo SINE Alu -89 223 1 1869 136 46 0 chr6 34222854 34223134 -148192108 - AluSx SINE Alu -19 293 1 1884 154 17 3 chr6 34223134 34223425 -148191817 - AluJo SINE Alu -7 305 10 196 233 82 55 chr6 34223436 34223509 -148191733 - MIR SINE MIR -160 102 28 2143 108 0 7 chr6 34223850 34224138 -148191104 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr6 34226244 34226264 -148188978 + (GGA)n Simple_repeat Simple_repeat 1 20 0 2575 67 0 0 chr6 34229336 34229636 -148185606 + AluY SINE Alu 1 300 -11 874 93 0 0 chr6 34230899 34231017 -148184225 + L1PB1 LINE L1 6017 6134 -17 2042 156 0 10 chr6 34231741 34232049 -148183193 - AluJb SINE Alu -7 305 1 2342 100 0 0 chr6 34232059 34232358 -148182884 - AluY SINE Alu -12 299 1 1800 154 25 44 chr6 34234784 34235102 -148180140 + AluJb SINE Alu 1 312 0 21 0 0 0 chr6 34237816 34237837 -148177405 + AT_rich Low_complexity Low_complexity 1 21 0 218 171 0 0 chr6 34238449 34238484 -148176758 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr6 34238987 34239007 -148176235 + (A)n Simple_repeat Simple_repeat 1 20 0 336 91 45 76 chr6 34242010 34242076 -148173166 - U6 snRNA snRNA -43 64 1 2412 94 0 0 chr6 34242675 34242973 -148172269 - AluSc SINE Alu -11 298 1 2472 71 0 0 chr6 34243793 34244120 -148171122 + AluY SINE Alu 1 311 0 2308 106 0 0 chr6 34244333 34244625 -148170617 - AluSg SINE Alu -18 292 1 2304 99 13 0 chr6 34244877 34245179 -148170063 + AluSq SINE Alu 1 306 -7 212 358 50 17 chr6 34245226 34245346 -148169896 + L3 LINE CR1 1432 1555 -22 2236 113 0 10 chr6 34245419 34245719 -148169523 + AluSx SINE Alu 1 297 -15 2320 104 0 7 chr6 34246040 34246348 -148168894 + AluSg1 SINE Alu 3 308 -1 1656 133 118 11 chr6 34246844 34247123 -148168119 + AluSg1 SINE Alu 1 309 0 767 228 0 0 chr6 34247348 34247497 -148167745 + MER58B DNA MER1_type 193 341 0 2118 114 52 0 chr6 34247528 34247817 -148167425 - AluSp SINE Alu -8 305 2 1979 125 0 28 chr6 34247865 34248153 -148167089 - AluSx SINE Alu -32 280 1 586 305 0 61 chr6 34248970 34249167 -148166075 - MER91A DNA MER1_type -11 185 1 2009 137 17 3 chr6 34249576 34249869 -148165373 + AluJb SINE Alu 1 297 -15 2203 131 0 0 chr6 34252363 34252660 -148162582 - AluSg SINE Alu -13 297 1 1920 153 10 0 chr6 34252660 34252954 -148162288 - AluJo SINE Alu -12 300 3 2108 140 0 3 chr6 34252996 34253296 -148161946 - AluSx SINE Alu -7 305 7 2460 62 7 0 chr6 34253313 34253601 -148161641 - AluY SINE Alu -21 290 1 464 194 146 149 chr6 34253803 34253877 -148161365 - L2 LINE L2 -3 3310 3237 1527 131 0 18 chr6 34253877 34254106 -148161136 + AluJb SINE Alu 86 310 -2 2278 112 0 3 chr6 34254116 34254412 -148160830 + AluSx SINE Alu 6 300 -12 2114 142 0 3 chr6 34254413 34254724 -148160518 + AluSx SINE Alu 1 310 -2 464 194 146 149 chr6 34254724 34254951 -148160291 - L2 LINE L2 -84 3229 2997 2359 54 40 14 chr6 34254959 34255256 -148159986 + AluY SINE Alu 1 305 -6 1207 104 11 22 chr6 34255256 34255430 -148159812 + AluSg/x SINE Alu 135 308 -4 940 180 0 12 chr6 34255437 34255598 -148159644 + FRAM SINE Alu 10 168 -8 323 164 0 15 chr6 34256970 34257037 -148158205 + GA-rich Low_complexity Low_complexity 5 70 0 1773 166 19 35 chr6 34257184 34257498 -148157744 + AluJb SINE Alu 4 312 0 264 136 91 0 chr6 34257542 34257617 -148157625 + Alu SINE Alu 235 313 0 1513 165 81 4 chr6 34257665 34257926 -148157316 - AluJo SINE Alu -31 281 1 441 51 0 0 chr6 34257927 34257986 -148157256 - L1MA7 LINE L1 -461 5830 5772 3085 132 27 0 chr6 34257986 34258503 -148156739 - L1MA4 LINE L1 -1 6299 5769 986 198 18 0 chr6 34258503 34258670 -148156572 - AluSg/x SINE Alu -24 286 117 2256 125 0 0 chr6 34258695 34258998 -148156244 - AluSx SINE Alu -9 303 1 2319 115 3 0 chr6 34259002 34259306 -148155936 - AluSp SINE Alu -8 305 1 553 105 29 0 chr6 34259311 34259420 -148155822 - L1ME LINE L1 -381 5781 5669 635 237 8 0 chr6 34259456 34259587 -148155655 - AluJo SINE Alu -103 209 78 309 250 16 0 chr6 34259587 34259651 -148155591 + MER2 DNA MER2_type 281 345 0 1753 140 23 8 chr6 34259702 34259966 -148155276 + AluSx SINE Alu 1 268 -44 217 352 56 24 chr6 34262016 34262141 -148153101 + L2 LINE L2 3144 3272 0 736 142 8 0 chr6 34262975 34263102 -148152140 - L1MB3 LINE L1 -1 6182 6055 1855 179 3 16 chr6 34263113 34263425 -148151817 - AluJo SINE Alu -4 308 1 2036 136 0 7 chr6 34263950 34264244 -148150998 - AluSx SINE Alu -16 296 5 560 233 31 25 chr6 34264331 34264490 -148150752 - MIR SINE MIR 0 262 103 225 305 183 0 chr6 34264556 34264720 -148150522 + L2 LINE L2 2719 2912 -402 2210 89 41 0 chr6 34264829 34265121 -148150121 - AluSx SINE Alu -8 304 1 193 337 67 11 chr6 34265334 34265423 -148149819 - L2 LINE L2 -17 3296 3203 2467 81 0 31 chr6 34266598 34266921 -148148321 - AluSp SINE Alu 0 313 1 2433 68 3 0 chr6 34266928 34267221 -148148021 - AluSp SINE Alu -19 294 1 242 314 23 12 chr6 34267333 34267419 -148147823 - MIR SINE MIR -66 142 56 1118 61 0 0 chr6 34267573 34267704 -148147538 + AluY SINE Alu 2 132 -179 189 323 115 15 chr6 34267792 34267922 -148147320 + L2 LINE L2 3171 3313 0 33 43 0 0 chr6 34270017 34270064 -148145178 + GC_rich Low_complexity Low_complexity 1 47 0 1319 145 7 86 chr6 34270494 34270763 -148144479 + AluJo SINE Alu 40 287 -25 2465 78 3 0 chr6 34270771 34271079 -148144163 + AluSc SINE Alu 1 309 0 376 198 0 55 chr6 34273097 34273188 -148142054 + L2 LINE L2 3225 3310 -3 917 142 231 4 chr6 34274145 34274370 -148140872 - MER2 DNA MER2_type -36 309 34 409 207 49 0 chr6 34274461 34274543 -148140699 - FAM SINE Alu -78 97 12 279 216 68 45 chr6 34274658 34274746 -148140496 + MER5A DNA MER1_type 18 107 -82 1218 136 39 152 chr6 34274864 34275160 -148140082 + AluJb SINE Alu 3 260 -52 2121 121 13 10 chr6 34275160 34275465 -148139777 - AluSx SINE Alu -6 306 1 1218 136 39 152 chr6 34275465 34275498 -148139744 + AluJb SINE Alu 260 295 -17 952 209 0 0 chr6 34275836 34275994 -148139248 - FRAM SINE Alu -16 160 3 2161 125 7 13 chr6 34276007 34276311 -148138931 - AluSx SINE Alu -10 302 1 2282 125 3 0 chr6 34277072 34277376 -148137866 - AluSx SINE Alu -7 305 1 2371 88 10 0 chr6 34277386 34277683 -148137559 - AluY SINE Alu -9 302 3 2274 113 0 13 chr6 34277685 34277986 -148137256 - AluSx SINE Alu -15 297 1 720 252 67 21 chr6 34277996 34278234 -148137008 - MIR SINE MIR -10 252 4 214 317 48 0 chr6 34278433 34278537 -148136705 + MIR SINE MIR 151 259 -3 2339 99 3 3 chr6 34279810 34280114 -148135128 + AluSx SINE Alu 1 304 -8 2162 121 13 10 chr6 34280578 34280876 -148134366 - AluSx SINE Alu -13 299 1 1827 161 24 3 chr6 34280967 34281259 -148133983 - AluJb SINE Alu -14 298 1 1027 279 73 31 chr6 34281489 34281640 -148133602 - HAL1 LINE L1 -716 1791 1648 2177 142 0 0 chr6 34281640 34281943 -148133299 - AluSq SINE Alu -10 303 1 1027 279 73 31 chr6 34281943 34282066 -148133176 - HAL1 LINE L1 -859 1648 1532 2268 124 3 0 chr6 34282066 34282372 -148132870 + AluSq SINE Alu 1 307 -6 1902 172 23 3 chr6 34282376 34282679 -148132563 + AluJb SINE Alu 1 309 -3 1027 279 73 31 chr6 34282679 34282849 -148132393 - HAL1 LINE L1 -977 1530 1322 2296 98 3 0 chr6 34282916 34283213 -148132029 - AluY SINE Alu -13 298 1 1477 99 42 0 chr6 34283354 34283546 -148131696 - AluSg/x SINE Alu -40 272 73 1012 286 165 43 chr6 34283552 34283779 -148131463 - HAL1 LINE L1 -1669 838 640 180 0 0 0 chr6 34283779 34283799 -148131443 + (TTGGGG)n Simple_repeat Simple_repeat 3 22 0 1012 286 165 43 chr6 34283799 34283939 -148131303 - HAL1 LINE L1 -1867 640 518 1819 137 3 81 chr6 34283939 34284274 -148130968 + AluSx SINE Alu 4 312 0 1012 286 165 43 chr6 34284274 34284555 -148130687 - HAL1 LINE L1 -1989 518 110 1942 182 0 3 chr6 34284575 34284888 -148130354 + AluJb SINE Alu 1 312 0 768 73 18 0 chr6 34284911 34285021 -148130221 - HY1 scRNA scRNA 0 112 1 518 16 0 0 chr6 34285050 34285114 -148130128 + AluY SINE Alu 233 296 -16 297 250 0 0 chr6 34285124 34285184 -148130058 - HAL1 LINE L1 -2438 69 10 2592 64 0 0 chr6 34285202 34285499 -148129743 - AluY SINE Alu -14 297 1 362 290 184 37 chr6 34285502 34285774 -148129468 + L2 LINE L2 2652 2963 -351 201 39 0 0 chr6 34285788 34285814 -148129428 + (ACTG)n Simple_repeat Simple_repeat 1 26 0 492 62 0 0 chr6 34285816 34285880 -148129362 + (TCCG)n Simple_repeat Simple_repeat 2 65 0 1891 127 33 11 chr6 34285893 34286168 -148129074 - AluSx SINE Alu -31 281 1 712 330 47 20 chr6 34286201 34286543 -148128699 + L2 LINE L2 2959 3309 -4 205 368 21 0 chr6 34286606 34286701 -148128541 - MIR3 SINE MIR -41 167 71 420 222 154 86 chr6 34286727 34286889 -148128353 - MER5A DNA MER1_type -8 181 9 2886 188 64 14 chr6 34287048 34287669 -148127573 + MER82 DNA MER2_type 1 652 -1 607 301 68 0 chr6 34287766 34287929 -148127313 - MER91A DNA MER1_type 0 196 23 2404 112 0 0 chr6 34287973 34288278 -148126964 - AluSg SINE Alu -5 305 1 1792 160 17 0 chr6 34288278 34288572 -148126670 - AluJb SINE Alu -13 299 1 198 0 0 0 chr6 34289445 34289467 -148125775 + (T)n Simple_repeat Simple_repeat 1 22 0 1806 109 0 0 chr6 34289467 34289697 -148125545 - AluSq SINE Alu -83 230 1 599 183 1 7 chr6 34293435 34293449 -148121793 - L1PA16 LINE L1 -134 6022 6009 1918 85 0 12 chr6 34293449 34293697 -148121545 - AluSc SINE Alu -10 299 55 599 183 1 7 chr6 34293697 34293807 -148121435 - L1PA16 LINE L1 -147 6009 5903 445 81 0 0 chr6 34293807 34293869 -148121373 - AluSc SINE Alu -246 63 2 2217 132 3 0 chr6 34294073 34294428 -148120814 + L1PA16 LINE L1 5799 6154 -12 608 160 104 0 chr6 34294476 34294582 -148120660 + FLAM_C SINE Alu 5 121 -22 186 43 0 0 chr6 34294582 34294605 -148120637 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 68 23 0 chr6 34294605 34294649 -148120593 + L1M1 LINE L1 5788 5832 -468 1684 141 30 8 chr6 34294989 34295152 -148120090 - AluJb SINE Alu -14 298 125 495 0 0 0 chr6 34295152 34295207 -148120035 + (TA)n Simple_repeat Simple_repeat 1 55 0 1684 141 30 8 chr6 34295207 34295305 -148119937 - AluJb SINE Alu -187 125 31 233 196 0 0 chr6 34295510 34295556 -148119686 + CT-rich Low_complexity Low_complexity 2 47 0 2436 112 0 0 chr6 34295612 34295924 -148119318 + AluSx SINE Alu 1 312 0 246 355 86 43 chr6 34295968 34296224 -148119018 - L2 LINE L2 -179 3093 2827 207 321 25 37 chr6 34296673 34296754 -148118488 + L2 LINE L2 3186 3265 -7 444 258 62 67 chr6 34297985 34298194 -148117048 + L2 LINE L2 3098 3305 -8 358 281 156 0 chr6 34298741 34298908 -148116334 + MIR SINE MIR 49 241 -21 1982 147 0 3 chr6 34299174 34299491 -148115751 - AluJo SINE Alu 0 316 1 21 0 0 0 chr6 34299491 34299512 -148115730 + AT_rich Low_complexity Low_complexity 1 21 0 2398 88 0 3 chr6 34299516 34299810 -148115432 + AluSg SINE Alu 1 293 -17 1999 80 53 8 chr6 34299810 34300071 -148115171 - AluSx SINE Alu -37 275 2 206 206 0 0 chr6 34300361 34300395 -148114847 + (CAGCC)n Simple_repeat Simple_repeat 1 34 0 369 256 22 0 chr6 34300514 34300604 -148114638 + L2 LINE L2 3182 3273 -40 205 324 15 0 chr6 34300842 34300910 -148114332 + MIR3 SINE MIR 132 200 -8 2435 75 10 0 chr6 34302319 34302613 -148112629 + AluSq SINE Alu 1 297 -16 298 283 6 31 chr6 34302729 34302750 -148112492 - L1MA10 LINE L1 0 6334 6314 2267 216 39 21 chr6 34302750 34302995 -148112247 - L1ME1 LINE L1 -8 6158 5919 2333 100 27 0 chr6 34302995 34303296 -148111946 + AluSq SINE Alu 1 309 -4 2267 216 39 21 chr6 34303296 34303619 -148111623 - L1ME1 LINE L1 -247 5919 5580 229 158 0 0 chr6 34303620 34303658 -148111584 + Alu SINE Alu 2 39 -264 1168 112 7 0 chr6 34303658 34303810 -148111432 - AluSx SINE Alu -159 153 1 1493 173 12 4 chr6 34303813 34304061 -148111181 + AluJb SINE Alu 50 299 -13 2289 90 30 7 chr6 34304062 34304361 -148110881 + AluSg SINE Alu 1 306 -4 2250 75 3 14 chr6 34304775 34305081 -148110161 - AluY SINE Alu 0 304 2 447 307 58 54 chr6 34305081 34305274 -148109968 - MIR SINE MIR -36 226 29 187 268 0 0 chr6 34305294 34305335 -148109907 + MIR SINE MIR 21 61 -201 2282 126 0 0 chr6 34305338 34305648 -148109594 - AluSg SINE Alu 0 310 1 1620 193 0 39 chr6 34305648 34305952 -148109290 - AluJo SINE Alu -17 295 3 256 351 146 0 chr6 34305957 34306122 -148109120 - MIR SINE MIR -58 204 16 183 80 0 0 chr6 34306639 34306664 -148108578 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 920 199 24 15 chr6 34306690 34306721 -148108521 - MER3 DNA MER1_type 0 209 180 2261 115 0 7 chr6 34306721 34306890 -148108352 - AluSx SINE Alu -10 302 134 2407 74 0 7 chr6 34306890 34307207 -148108035 - AluY SINE Alu 0 311 2 2261 115 0 7 chr6 34307207 34307341 -148107901 - AluSx SINE Alu -178 134 1 920 199 24 15 chr6 34307341 34307515 -148107727 - MER3 DNA MER1_type -29 180 2 428 144 0 56 chr6 34308436 34308526 -148106716 - AluJ/FRAM SINE Alu -8 304 220 1444 175 20 4 chr6 34308783 34309029 -148106213 - AluJo SINE Alu -62 250 1 2440 79 7 0 chr6 34309459 34309763 -148105479 - AluSp SINE Alu -7 306 1 305 276 31 24 chr6 34309821 34309948 -148105294 - LTR67 LTR ERVL -17 540 413 289 299 41 10 chr6 34310394 34310491 -148104751 + MIR SINE MIR 156 255 -7 456 251 37 55 chr6 34310516 34310623 -148104619 - MER63A DNA MER1_type -1478 210 103 2779 163 124 67 chr6 34310623 34310723 -148104519 - MER39 LTR ERV1 0 707 614 1732 189 33 0 chr6 34310723 34311024 -148104218 - AluJb SINE Alu -1 311 1 2779 163 124 67 chr6 34311024 34311141 -148104101 - MER39 LTR ERV1 -93 614 505 2363 116 0 0 chr6 34311141 34311444 -148103798 + AluSx SINE Alu 1 303 -9 2779 163 124 67 chr6 34311444 34311476 -148103766 - MER39 LTR ERV1 -202 505 476 2553 77 3 0 chr6 34311476 34311786 -148103456 + AluSp SINE Alu 1 311 -2 2779 163 124 67 chr6 34311786 34312203 -148103039 - MER39 LTR ERV1 -231 476 1 456 251 37 55 chr6 34312203 34312258 -148102984 - MER63A DNA MER1_type -1585 103 51 648 317 147 18 chr6 34312357 34312739 -148102503 - MLT1J LTR MaLR -6 505 75 241 319 66 56 chr6 34312903 34313157 -148102085 - L2 LINE L2 -470 2844 2585 8627 64 5 7 chr6 34313157 34314231 -148101011 - MER11C LTR ERVK 0 1071 1 241 319 66 56 chr6 34314231 34314264 -148100978 - L2 LINE L2 -729 2585 2554 2281 123 0 0 chr6 34314394 34314702 -148100540 - AluSq SINE Alu -5 308 1 1681 166 0 56 chr6 34314704 34315024 -148100218 - AluJo SINE Alu -9 303 2 1035 229 117 40 chr6 34315030 34315432 -148099810 - LTR16A1 LTR ERVL 0 457 25 213 316 19 52 chr6 34315453 34315608 -148099634 - L2 LINE L2 -954 2360 2211 1666 175 4 18 chr6 34315614 34315948 -148099294 - AluJb SINE Alu 0 336 7 940 231 154 21 chr6 34316180 34316492 -148098750 - MLT1G LTR MaLR 0 590 321 1793 149 23 46 chr6 34316492 34316794 -148098448 - AluJb SINE Alu -17 295 1 940 231 154 21 chr6 34316794 34316981 -148098261 - MLT1G LTR MaLR -269 321 1 213 272 39 0 chr6 34317219 34317290 -148097952 - MIR SINE MIR -107 155 82 386 250 47 0 chr6 34318527 34318655 -148096587 - L1ME4a LINE L1 -11 6110 5977 243 306 118 63 chr6 34318667 34319014 -148096228 + L2 LINE L2 2909 3274 -39 375 303 76 0 chr6 34319090 34319209 -148096033 - L2 LINE L2 -8 3264 3137 579 284 60 22 chr6 34319341 34319524 -148095718 - MIR3 SINE MIR -3 205 16 479 315 62 45 chr6 34319526 34319854 -148095388 + L2 LINE L2 2449 2770 -544 1522 167 20 106 chr6 34319854 34320002 -148095240 - MLT1A2 LTR MaLR 0 374 215 1831 106 94 4 chr6 34320002 34320306 -148094936 - AluSc SINE Alu 0 309 1 2376 99 3 13 chr6 34320308 34320620 -148094622 - AluSx SINE Alu -3 309 1 1522 167 20 106 chr6 34320620 34320875 -148094367 - MLT1A2 LTR MaLR -160 214 3 479 315 62 45 chr6 34320875 34320946 -148094296 + L2 LINE L2 2770 2855 -459 439 315 50 50 chr6 34321057 34321298 -148093944 + L2 LINE L2 3007 3247 -25 2442 98 0 0 chr6 34321920 34322217 -148093025 + AluSq SINE Alu 1 297 -16 300 164 79 145 chr6 34322217 34322369 -148092873 + L1ME3 LINE L1 5968 6109 -53 23 0 0 0 chr6 34322390 34322413 -148092829 + AT_rich Low_complexity Low_complexity 1 23 0 1951 170 20 0 chr6 34322421 34322727 -148092515 + AluJb SINE Alu 1 312 0 1007 216 22 86 chr6 34322758 34323119 -148092123 + L1ME1 LINE L1 5811 6148 -18 26 0 0 0 chr6 34323119 34323145 -148092097 + AT_rich Low_complexity Low_complexity 1 26 0 583 122 0 0 chr6 34324109 34324191 -148091051 + AluS SINE Alu 5 86 -226 452 148 0 0 chr6 34324192 34324264 -148090978 - AluS SINE Alu -237 66 1 2404 60 0 10 chr6 34324515 34324816 -148090426 - AluY SINE Alu -13 298 1 2236 113 3 3 chr6 34324816 34325117 -148090125 - AluSx SINE Alu -11 301 1 379 359 30 0 chr6 34325149 34325280 -148089962 + MIR SINE MIR 20 154 -108 1172 227 65 36 chr6 34325388 34325696 -148089546 + MLT1I LTR MaLR 93 409 0 1851 167 3 7 chr6 34325826 34326119 -148089123 - AluJo SINE Alu -20 292 1 234 325 0 17 chr6 34326187 34326307 -148088935 + A-rich Low_complexity Low_complexity 2 119 0 2123 137 0 0 chr6 34326318 34326661 -148088581 + AluSx SINE Alu 1 343 0 416 299 131 53 chr6 34326877 34327410 -148087832 - L2 LINE L2 -20 3252 2674 507 149 6 119 chr6 34327537 34327594 -148087648 - MER83 LTR ERV1 0 448 386 2391 88 0 16 chr6 34327594 34327899 -148087343 + AluSx SINE Alu 1 300 -12 507 149 6 119 chr6 34327899 34328067 -148087175 - MER83 LTR ERV1 -62 386 114 6570 154 23 16 chr6 34328069 34329189 -148086053 - MER83-int LTR ERV1 -3741 1139 12 1604 175 73 80 chr6 34329189 34329640 -148085602 - MER83 LTR ERV1 0 448 1 374 257 59 103 chr6 34329641 34329739 -148085503 - MIR SINE MIR -19 243 142 2321 103 0 0 chr6 34329739 34330031 -148085211 - AluSc SINE Alu -17 292 1 374 257 59 103 chr6 34330031 34330185 -148085057 - MIR SINE MIR -120 142 2 218 303 98 32 chr6 34330268 34330460 -148084782 - MIR SINE MIR -56 206 1 197 234 16 47 chr6 34331318 34331382 -148083860 - MIR SINE MIR -64 198 137 2176 136 42 112 chr6 34331385 34331622 -148083620 - L1MB3 LINE L1 -7 6176 5924 1676 115 0 0 chr6 34331622 34331848 -148083394 - AluSc SINE Alu 0 309 84 2176 136 42 112 chr6 34331848 34331875 -148083367 - L1MB3 LINE L1 -259 5924 5897 1922 134 51 0 chr6 34331875 34332150 -148083092 + AluSx SINE Alu 1 289 -23 2137 99 39 0 chr6 34332158 34332442 -148082800 + AluSx SINE Alu 1 295 -17 2176 136 42 112 chr6 34332442 34332479 -148082763 - L1MB3 LINE L1 -288 5895 4790 2321 99 0 3 chr6 34332479 34332772 -148082470 - AluSp SINE Alu -18 295 4 469 243 62 82 chr6 34332777 34332892 -148082350 - L1MD3 LINE L1 -2104 5891 5775 1928 160 0 20 chr6 34332892 34333198 -148082044 - AluJb SINE Alu -12 300 1 469 243 62 82 chr6 34333198 34333325 -148081917 - L1MD3 LINE L1 -2220 5775 5654 233 146 0 0 chr6 34333296 34333344 -148081898 - L1MB7 LINE L1 -7 6177 6130 * 537 106 0 75 chr6 34333348 34333442 -148081800 + AluSg/x SINE Alu 210 296 -16 4148 141 70 43 chr6 34333442 34333473 -148081769 - L1MB7 LINE L1 -47 6137 6108 2160 108 10 0 chr6 34333473 34333769 -148081473 - AluSg SINE Alu -10 300 2 4148 141 70 43 chr6 34333769 34334442 -148080800 - L1MB7 LINE L1 -76 6108 5455 2166 94 49 3 chr6 34334442 34334728 -148080514 - AluSx SINE Alu -13 299 1 4148 141 70 43 chr6 34334728 34334950 -148080292 - L1MB7 LINE L1 -729 5455 5240 889 133 0 15 chr6 34334950 34335085 -148080157 - FLAM_C SINE Alu 0 133 1 4148 141 70 43 chr6 34335085 34335360 -148079882 - L1MB7 LINE L1 -944 5240 4912 840 126 0 0 chr6 34335413 34335532 -148079710 + FLAM_C SINE Alu 1 119 -24 195 42 0 0 chr6 34335536 34335560 -148079682 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 308 297 0 50 chr6 34335561 34335662 -148079580 + L2 LINE L2 3176 3271 -1 265 244 47 12 chr6 34335661 34335747 -148079495 - MIR SINE MIR -126 136 48 * 2393 79 17 0 chr6 34335761 34336052 -148079190 - AluSc SINE Alu -13 296 1 2209 85 17 0 chr6 34336155 34336500 -148078742 + AluSq SINE Alu 1 313 0 251 260 328 11 chr6 34337192 34337369 -148077873 - MIR SINE MIR -10 252 20 477 201 85 39 chr6 34337508 34337711 -148077531 - MER63 DNA MER1_type 0 1060 1 2206 108 34 0 chr6 34337713 34338009 -148077233 - AluSx SINE Alu -6 306 1 662 171 70 23 chr6 34338479 34338608 -148076634 - AluJo SINE Alu -93 219 85 1904 164 17 0 chr6 34338741 34339033 -148076209 + AluJb SINE Alu 1 297 -15 479 346 23 68 chr6 34339997 34340128 -148075114 - L2 LINE L2 0 3272 3157 2398 82 0 10 chr6 34340128 34340434 -148074808 - AluSq SINE Alu -10 303 1 479 346 23 68 chr6 34340434 34340568 -148074674 - L2 LINE L2 -115 3157 3019 199 276 103 0 chr6 34340601 34340659 -148074583 + L2 LINE L2 3160 3223 -49 339 314 0 0 chr6 34340880 34340966 -148074276 + MIR SINE MIR 44 129 -133 2483 67 0 0 chr6 34341071 34341370 -148073872 - AluY SINE Alu -12 299 1 2350 88 0 0 chr6 34341677 34341986 -148073256 - AluSg SINE Alu 0 309 1 1941 161 0 13 chr6 34341994 34342293 -148072949 - AluJb SINE Alu -17 295 1 2263 84 61 3 chr6 34342793 34343089 -148072153 - AluSq SINE Alu 0 313 1 1202 202 116 27 chr6 34343635 34343893 -148071349 + AluJb SINE Alu 12 292 -20 183 42 0 0 chr6 34344166 34344190 -148071052 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 199 317 24 12 chr6 34344596 34344678 -148070564 + MIR SINE MIR 170 252 -10 2189 125 0 0 chr6 34345298 34345620 -148069622 - AluSx SINE Alu 0 322 1 1631 163 19 0 chr6 34345862 34346120 -148069122 - AluJo SINE Alu -49 263 1 230 121 0 0 chr6 34346166 34346199 -148069043 + Alu SINE Alu 1 33 -269 713 200 6 62 chr6 34346252 34346412 -148068830 - AluJb SINE Alu -144 168 18 935 246 17 61 chr6 34346431 34346838 -148068404 - L1MC5 LINE L1 -436 7525 7137 1259 232 74 61 chr6 34346889 34347415 -148067827 - L1MC5 LINE L1 -812 7149 6617 24 0 0 0 chr6 34347452 34347476 -148067766 + AT_rich Low_complexity Low_complexity 1 24 0 1700 196 82 54 chr6 34347684 34348113 -148067129 - LTR47B LTR ERVL -2 441 1 380 246 138 7 chr6 34348391 34348529 -148066713 - L1MC5 LINE L1 -1925 5883 5728 189 0 0 0 chr6 34348529 34348550 -148066692 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 675 152 62 18 chr6 34348563 34348675 -148066567 - AluJb SINE Alu -194 118 2 1001 263 53 19 chr6 34348676 34348999 -148066243 - L1MC5 LINE L1 -2072 5736 5403 198 0 0 0 chr6 34349000 34349022 -148066220 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 319 256 126 51 chr6 34349022 34349037 -148066205 - L1MC5 LINE L1 -983 5163 5151 1552 112 0 0 chr6 34349037 34349234 -148066008 - AluSg SINE Alu -113 197 1 319 256 126 51 chr6 34349234 34349433 -148065809 - L1MC5 LINE L1 -995 5151 4933 2190 116 13 0 chr6 34349823 34350126 -148065116 - AluSx SINE Alu -5 307 1 196 294 181 1 chr6 34350366 34350550 -148064692 - MIR SINE MIR -28 234 8 211 305 76 34 chr6 34350693 34350811 -148064431 + L2 LINE L2 3150 3272 0 2192 109 17 3 chr6 34350999 34351301 -148063941 + AluSx SINE Alu 5 310 -2 334 344 0 0 chr6 34351310 34351400 -148063842 + L1MC4 LINE L1 6614 6703 -1339 2131 132 0 16 chr6 34351758 34352068 -148063174 + AluSq SINE Alu 1 305 -8 2393 97 0 6 chr6 34352068 34352378 -148062864 + AluSc SINE Alu 1 309 0 2232 101 0 11 chr6 34352395 34352708 -148062534 + AluSx SINE Alu 1 310 0 4211 150 85 80 chr6 34353217 34354143 -148061099 - MER21A LTR ERV1 0 931 1 2076 121 10 3 chr6 34354245 34354534 -148060708 - AluSx SINE Alu -21 291 1 1549 149 72 57 chr6 34354666 34354799 -148060443 - MER39 LTR ERV1 -16 691 561 2257 128 0 6 chr6 34354799 34355111 -148060131 + AluSx SINE Alu 1 310 -2 1549 149 72 57 chr6 34355111 34355326 -148059916 - MER39 LTR ERV1 -146 561 338 1382 153 5 5 chr6 34355326 34355549 -148059693 - pTR5 LTR ERV1 -2046 392 170 285 303 0 0 chr6 34355550 34355649 -148059593 - LTR30 LTR ERV1 -80 642 544 4036 156 46 49 chr6 34355650 34356614 -148058628 - pTR5 LTR ERV1 -414 2024 743 1601 149 76 6 chr6 34356614 34356930 -148058312 - MER39 LTR ERV1 -366 341 4 2022 118 13 23 chr6 34356968 34357273 -148057969 - AluSx SINE Alu -10 302 1 1920 167 0 16 chr6 34357539 34357845 -148057397 + AluJo SINE Alu 3 303 -9 242 95 24 0 chr6 34357856 34357898 -148057344 + Charlie8 DNA MER1_type 87 129 -2288 968 208 56 5 chr6 34357907 34358104 -148057138 + AluJo SINE Alu 86 292 -20 2374 94 0 7 chr6 34358564 34358862 -148056380 + AluSx SINE Alu 1 296 -16 2188 180 59 21 chr6 34359312 34359834 -148055408 + MER74A LTR ERVL 4 545 -13 1867 155 3 30 chr6 34359916 34360241 -148055001 + AluSx SINE Alu 1 312 0 1648 177 0 32 chr6 34360255 34360532 -148054710 + AluJo SINE Alu 6 273 -39 560 229 84 12 chr6 34360569 34360735 -148054507 + L2 LINE L2 3100 3277 -36 254 289 20 86 chr6 34360768 34360965 -148054277 - MLT1J LTR MaLR -215 296 113 2387 78 14 0 chr6 34361122 34361416 -148053826 - AluY SINE Alu -13 298 1 2255 117 0 7 chr6 34361457 34361765 -148053477 - AluSx SINE Alu -4 308 3 263 28 28 0 chr6 34362010 34362046 -148053196 + (TG)n Simple_repeat Simple_repeat 1 37 0 1072 187 10 30 chr6 34362224 34362422 -148052820 - AluJo SINE Alu -118 194 1 1607 131 64 17 chr6 34362422 34362719 -148052523 - MER39 LTR ERV1 -396 311 1 539 255 98 21 chr6 34363202 34363437 -148051805 + MLT1J LTR MaLR 230 482 -29 1899 122 10 56 chr6 34363455 34363758 -148051484 - AluSq SINE Alu -24 289 1 368 104 30 30 chr6 34363758 34363825 -148051417 - AluSc SINE Alu -7 292 226 7159 121 128 97 chr6 34363828 34365473 -148049769 - pTR5 LTR ERV1 0 2438 742 1801 109 0 0 chr6 34365473 34365703 -148049539 - AluSx SINE Alu -82 230 1 216 250 0 0 chr6 34365898 34365953 -148049289 + MIR SINE MIR 102 157 -51 1518 143 0 41 chr6 34366221 34366466 -148048776 - AluJb SINE Alu -21 291 57 2150 120 3 0 chr6 34366714 34367006 -148048236 + AluSx SINE Alu 1 293 -19 2398 73 3 3 chr6 34367671 34367971 -148047271 - AluSc SINE Alu -9 300 1 279 328 189 22 chr6 34368396 34368825 -148046417 - L2 LINE L2 -1004 2310 1789 1166 262 90 31 chr6 34368825 34369249 -148045993 + LTR16A LTR ERVL 2 450 0 279 328 189 22 chr6 34369249 34369307 -148045935 - L2 LINE L2 -1525 1789 1742 414 219 37 0 chr6 34369315 34369397 -148045845 + FRAM/FAM SINE Alu 1 77 -99 2065 127 27 13 chr6 34369506 34369678 -148045564 - AluJb SINE Alu -8 304 125 2331 94 3 3 chr6 34369678 34369977 -148045265 - AluSp SINE Alu -14 299 1 2065 127 27 13 chr6 34369977 34370104 -148045138 - AluJb SINE Alu -187 125 1 333 414 30 20 chr6 34370105 34370303 -148044939 - L3 LINE CR1 -1351 226 27 224 264 299 0 chr6 34371400 34371487 -148043755 - L2 LINE L2 0 3272 3160 2417 98 0 0 chr6 34371658 34371963 -148043279 + AluSg SINE Alu 1 305 -5 456 123 0 0 chr6 34371995 34372068 -148043174 + (TTC)n Simple_repeat Simple_repeat 3 75 0 365 167 0 0 chr6 34372070 34372136 -148043106 - Alu SINE Alu -1 301 236 1902 172 3 3 chr6 34372418 34372720 -148042522 + AluJo SINE Alu 5 306 -6 259 208 0 0 chr6 34372793 34372841 -148042401 + MER57A LTR ERV1 292 339 -64 1308 120 0 0 chr6 34372848 34373031 -148042211 + AluSg/x SINE Alu 121 303 -9 216 245 0 75 chr6 34373214 34373267 -148041975 - MIR3 SINE MIR -49 159 111 288 258 32 11 chr6 34373347 34373440 -148041802 + MER5B DNA MER1_type 18 112 -66 2243 70 39 3 chr6 34373807 34374091 -148041151 - AluSx SINE Alu -18 294 1 527 273 105 6 chr6 34374419 34374591 -148040651 - MIR SINE MIR -1 261 73 2189 110 0 38 chr6 34374666 34374983 -148040259 + AluSx SINE Alu 1 305 -7 672 171 39 23 chr6 34375120 34375249 -148039993 - FLAM_A SINE Alu -2 131 1 343 194 45 0 chr6 34378224 34378291 -148036951 - MER50 LTR ERV1 -6 728 659 1217 127 42 14 chr6 34378301 34378513 -148036729 - MER50 LTR ERV1 -516 218 1 1075 170 0 0 chr6 34379662 34379827 -148035415 + FRAM SINE Alu 1 165 -1 1522 251 53 2 chr6 34380364 34380782 -148034460 + L1ME3A LINE L1 5724 6162 -8 1810 92 113 35 chr6 34380804 34381086 -148034156 + AluSx SINE Alu 1 304 -8 1396 199 138 39 chr6 34381239 34381681 -148033561 + MLT2B1 LTR ERVL 5 490 -30 237 60 20 40 chr6 34381694 34381744 -148033498 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2157 151 0 0 chr6 34381749 34382061 -148033181 - AluJo SINE Alu 0 312 1 1017 216 124 105 chr6 34382363 34382580 -148032662 + MLT1H1 LTR MaLR 5 217 -338 2480 88 0 3 chr6 34382580 34382885 -148032357 + AluSg SINE Alu 1 304 -6 1017 216 124 105 chr6 34382885 34382897 -148032345 + MLT1H1 LTR MaLR 217 227 -328 1609 167 37 0 chr6 34382897 34383166 -148032076 + AluJo SINE Alu 1 279 -33 1017 216 124 105 chr6 34383166 34383476 -148031766 + MLT1H1 LTR MaLR 227 555 0 1716 172 46 54 chr6 34384137 34384445 -148030797 + MLT1A2 LTR MaLR 3 309 -65 1803 155 3 42 chr6 34384445 34384589 -148030653 + AluJb SINE Alu 1 128 -184 2363 93 0 3 chr6 34384589 34384889 -148030353 + AluSx SINE Alu 6 304 -8 1803 155 3 42 chr6 34384889 34385053 -148030189 + AluJb SINE Alu 128 297 -15 1716 172 46 54 chr6 34385053 34385116 -148030126 + MLT1A2 LTR MaLR 309 371 -3 1688 144 50 14 chr6 34385647 34385925 -148029317 - AluJo SINE Alu -24 288 1 1528 271 53 27 chr6 34386000 34386601 -148028641 - L1MC4a LINE L1 -1733 6075 5459 32 57 0 0 chr6 34386947 34387000 -148028242 + AT_rich Low_complexity Low_complexity 1 53 0 2336 108 0 3 chr6 34387207 34387514 -148027728 - AluSc SINE Alu -3 306 1 465 215 51 82 chr6 34387675 34387870 -148027372 - MLT1J LTR MaLR -33 478 290 2409 99 0 0 chr6 34387907 34388209 -148027033 - AluSq SINE Alu -7 306 5 319 164 0 41 chr6 34388728 34388753 -148026489 - MER72 LTR ERV1 0 722 698 1400 172 122 7 chr6 34388753 34388875 -148026367 + AluJo SINE Alu 1 108 -204 234 0 0 0 chr6 34388875 34388901 -148026341 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1400 172 122 7 chr6 34388901 34389057 -148026185 + AluJo SINE Alu 108 311 -1 319 164 0 41 chr6 34389057 34389104 -148026138 - MER72 LTR ERV1 -24 698 653 649 146 10 0 chr6 34389107 34389203 -148026039 + AluJ/FLAM SINE Alu 3 99 -213 1641 127 15 42 chr6 34389204 34389552 -148025690 - MER61C LTR ERV1 0 434 1 1084 159 0 0 chr6 34389589 34389759 -148025483 + FRAM SINE Alu 1 170 -6 975 262 118 3 chr6 34389812 34390159 -148025083 - LTR16C LTR ERVL 0 491 105 4351 151 61 24 chr6 34390587 34391151 -148024091 + MER49 LTR ERV1 1 607 -316 2417 76 6 19 chr6 34391151 34391465 -148023777 - AluY SINE Alu -1 310 1 4351 151 61 24 chr6 34391465 34391733 -148023509 + MER49 LTR ERV1 607 864 -59 1380 159 0 14 chr6 34391733 34391953 -148023289 - AluJb SINE Alu -1 311 95 1512 129 20 31 chr6 34391953 34392295 -148022947 + MER61C LTR ERV1 3 434 0 205 222 10 61 chr6 34392529 34392628 -148022614 + GA-rich Low_complexity Low_complexity 2 95 0 198 0 0 0 chr6 34393609 34393631 -148021611 + (T)n Simple_repeat Simple_repeat 1 22 0 4157 125 44 2 chr6 34393649 34394263 -148020979 - LTR9B LTR ERV1 0 644 5 1722 143 8 11 chr6 34394268 34394534 -148020708 - AluSq SINE Alu -48 265 1 675 205 0 0 chr6 34394683 34394800 -148020442 + FLAM_C SINE Alu 1 117 -26 2412 99 0 3 chr6 34394804 34395116 -148020126 - AluSq SINE Alu 0 313 3 23 0 0 0 chr6 34395142 34395165 -148020077 + AT_rich Low_complexity Low_complexity 1 23 0 2356 106 0 3 chr6 34395165 34395477 -148019765 + AluSx SINE Alu 1 311 -1 814 94 0 0 chr6 34395552 34395658 -148019584 + AluSg/x SINE Alu 196 301 -8 1438 145 31 120 chr6 34395931 34396255 -148018987 + AluJo SINE Alu 1 295 -17 1413 233 87 74 chr6 34396416 34397052 -148018190 - MER21B LTR ERV1 -192 671 28 29 94 0 0 chr6 34397626 34397711 -148017531 + AT_rich Low_complexity Low_complexity 1 85 0 258 299 45 23 chr6 34398198 34398375 -148016867 - L1MC5 LINE L1 -52 7909 7729 2416 108 19 17 chr6 34398847 34399209 -148016033 + THE1B LTR MaLR 1 363 -1 2011 140 6 32 chr6 34399209 34399523 -148015719 + AluSx SINE Alu 1 306 -6 10193 99 43 43 chr6 34399536 34401115 -148014127 + THE1B-int LTR MaLR 2 1580 0 2043 139 37 32 chr6 34401115 34401471 -148013771 + THE1B LTR MaLR 1 367 -61 2285 109 23 0 chr6 34401471 34401775 -148013467 - AluSx SINE Alu -1 311 1 2043 139 37 32 chr6 34401775 34401838 -148013404 + THE1B LTR MaLR 367 428 0 822 234 9 53 chr6 34401863 34402150 -148013092 + L1ME1 LINE L1 5872 6291 -21 2570 68 0 3 chr6 34402173 34402484 -148012758 + AluY SINE Alu 1 310 -1 3993 138 19 17 chr6 34402646 34402835 -148012407 - MER41B LTR ERV1 -2 633 446 2050 112 58 0 chr6 34402835 34403129 -148012113 - AluSx SINE Alu -1 311 1 3993 138 19 17 chr6 34403129 34403571 -148011671 - MER41B LTR ERV1 -189 446 1 1101 278 80 17 chr6 34403989 34404464 -148010778 + MLT1J LTR MaLR 1 505 -6 286 306 126 9 chr6 34406098 34406209 -148009033 - L2 LINE L2 0 3272 3149 1995 161 7 0 chr6 34406595 34406905 -148008337 + AluJb SINE Alu 1 312 0 723 246 77 0 chr6 34407004 34407211 -148008031 + MLT1J LTR MaLR 1 223 -288 2189 133 0 0 chr6 34407246 34407546 -148007696 + AluSx SINE Alu 1 300 -12 2139 136 44 33 chr6 34407562 34407922 -148007320 - THE1B LTR MaLR 0 364 1 10098 85 26 82 chr6 34407922 34408975 -148006267 - THE1B-int LTR MaLR 0 1580 469 981 87 63 0 chr6 34408975 34409102 -148006140 + AluJb SINE Alu 1 135 -177 2289 110 3 13 chr6 34409102 34409411 -148005831 + AluSx SINE Alu 1 306 -6 10098 85 26 82 chr6 34409411 34409904 -148005338 - THE1B-int LTR MaLR -1109 471 1 2211 133 33 41 chr6 34409904 34410271 -148004971 - THE1B LTR MaLR 0 364 1 1465 193 4 23 chr6 34410274 34410538 -148004704 + AluJo SINE Alu 24 282 -30 2237 123 7 0 chr6 34411375 34411676 -148003566 - AluSg SINE Alu -7 303 1 1706 125 110 115 chr6 34411783 34411945 -148003297 + MSTA LTR MaLR 22 183 -245 2312 98 13 0 chr6 34411945 34412252 -148002990 + AluSp SINE Alu 1 311 -2 1706 125 110 115 chr6 34412252 34412498 -148002744 + MSTA LTR MaLR 183 428 0 982 111 4 183 chr6 34412889 34413124 -148002118 + 7SK RNA RNA 1 193 0 2693 152 21 2 chr6 34413792 34414212 -148001030 - MSTA LTR MaLR 0 428 1 1473 195 34 0 chr6 34414355 34414653 -148000589 + AluJo SINE Alu 1 308 -4 4929 118 48 5 chr6 34414788 34415594 -147999648 - Tigger1 DNA MER2_type -1 2417 1577 2339 103 0 0 chr6 34415610 34415922 -147999320 - AluSq SINE Alu -1 312 1 1026 91 0 0 chr6 34415924 34416056 -147999186 - AluSq/x SINE Alu -180 132 1 5064 98 1 12 chr6 34416056 34416808 -147998434 - Tigger1 DNA MER2_type -829 1589 846 237 108 0 0 chr6 34416893 34416930 -147998312 + (TG)n Simple_repeat Simple_repeat 2 38 0 404 115 0 39 chr6 34416941 34417019 -147998223 + MLT1F LTR MaLR 468 542 0 4601 170 56 67 chr6 34417444 34418526 -147996716 + MER11C LTR ERVK 1 1071 0 1080 246 67 29 chr6 34418624 34418644 -147996598 - MLT1I LTR MaLR 0 409 391 2215 100 0 3 chr6 34418644 34418943 -147996299 + AluSc SINE Alu 1 298 -11 1080 246 67 29 chr6 34418943 34418969 -147996273 - MLT1I LTR MaLR -18 391 367 1998 147 0 0 chr6 34418969 34419268 -147995974 - AluSx SINE Alu -13 299 1 1080 246 67 29 chr6 34419268 34419561 -147995681 - MLT1I LTR MaLR -42 367 56 309 180 22 11 chr6 34419561 34419650 -147995592 - L1MDa LINE L1 -4456 2084 1995 753 193 0 0 chr6 34419650 34419769 -147995473 + AluJb SINE Alu 2 120 -192 189 107 0 0 chr6 34419771 34419799 -147995443 + (CA)n Simple_repeat Simple_repeat 1 28 0 629 0 26 0 chr6 34419801 34419877 -147995365 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5516 196 70 40 chr6 34419878 34420836 -147994406 - L1MDa LINE L1 -4537 2003 1075 1677 181 3 10 chr6 34420836 34421128 -147994114 - AluJb SINE Alu -22 290 1 5516 196 70 40 chr6 34421128 34421189 -147994053 - L1MDa LINE L1 -5465 1075 1017 378 0 0 0 chr6 34421189 34421231 -147994011 + (TG)n Simple_repeat Simple_repeat 2 43 0 5516 196 70 40 chr6 34421231 34421596 -147993646 - L1MDa LINE L1 -5523 1017 576 1709 148 42 61 chr6 34421628 34422005 -147993237 + LTR8A LTR ERV1 358 727 0 644 246 59 27 chr6 34422007 34422194 -147993048 + LTR16C LTR ERVL 299 491 0 715 242 39 13 chr6 34422244 34422430 -147992812 - AluJ SINE Alu 0 302 137 833 142 0 43 chr6 34422430 34422540 -147992702 - AluJ SINE Alu -176 136 32 4111 99 7 14 chr6 34422540 34422863 -147992379 + MER41A LTR ERV1 1 321 -233 2034 114 0 14 chr6 34422863 34423183 -147992059 + AluSq SINE Alu 1 316 0 4111 99 7 14 chr6 34423183 34423416 -147991826 + MER41A LTR ERV1 321 554 0 833 142 0 43 chr6 34423416 34423446 -147991796 - AluJ SINE Alu -280 32 2 2200 81 0 3 chr6 34423447 34423744 -147991498 - AluY SINE Alu -15 296 1 3276 134 81 29 chr6 34423890 34424472 -147990770 + LTR9 LTR ERV1 1 612 0 24 0 0 0 chr6 34424647 34424671 -147990571 + AT_rich Low_complexity Low_complexity 1 24 0 221 268 10 82 chr6 34425155 34425252 -147989990 + MIR SINE MIR 36 125 -83 1278 201 73 28 chr6 34425459 34425603 -147989639 + AluJo SINE Alu 1 137 -165 2287 92 0 0 chr6 34425603 34425906 -147989336 + AluSg SINE Alu 1 303 -7 1278 201 73 28 chr6 34425906 34426049 -147989193 + AluJo SINE Alu 137 301 -1 399 309 36 26 chr6 34426052 34426246 -147988996 + MIR SINE MIR 48 243 -19 855 187 13 0 chr6 34426845 34426995 -147988247 - FRAM SINE Alu -4 172 21 1964 122 0 10 chr6 34427743 34428064 -147987178 - AluSq SINE Alu 0 313 3 1882 121 0 7 chr6 34428078 34428351 -147986891 - AluSx SINE Alu -5 307 37 1746 134 65 0 chr6 34428793 34429070 -147986172 - AluJb SINE Alu -16 296 2 213 111 0 28 chr6 34432192 34432228 -147983014 + (TCC)n Simple_repeat Simple_repeat 1 35 0 223 220 19 57 chr6 34432825 34432984 -147982258 + (CGGG)n Simple_repeat Simple_repeat 2 154 0 247 286 0 13 chr6 34433072 34433149 -147982093 + G-rich Low_complexity Low_complexity 3 78 0 229 187 0 53 chr6 34433239 34433314 -147981928 + C-rich Low_complexity Low_complexity 1 71 0 409 232 232 0 chr6 34435608 34435750 -147979492 - MER5A DNA MER1_type -1 188 14 182 375 98 0 chr6 34435814 34435926 -147979316 - L3 LINE CR1 -2 1575 1453 230 341 78 15 chr6 34436133 34436403 -147978839 - L1MC4a LINE L1 -1834 5974 5688 864 117 0 35 chr6 34436411 34436556 -147978686 - FLAM_C SINE Alu -1 142 3 302 304 33 21 chr6 34436559 34436978 -147978264 - L1MC4a LINE L1 -487 5675 5219 550 289 12 0 chr6 34437044 34437210 -147978032 + MIR SINE MIR 84 251 -11 443 238 0 57 chr6 34438146 34438268 -147976974 + L2 LINE L2 2204 2318 -996 816 113 8 16 chr6 34438268 34438392 -147976850 - FLAM_C SINE Alu -8 135 13 1323 265 78 26 chr6 34438393 34439113 -147976129 + L2 LINE L2 2308 3060 -253 369 43 0 0 chr6 34440186 34440233 -147975009 + (TG)n Simple_repeat Simple_repeat 2 48 0 362 223 240 0 chr6 34440317 34440438 -147974804 - MER91B DNA MER1_type -1 189 40 304 269 140 31 chr6 34442233 34442426 -147972816 - LTR33 LTR ERVL -134 387 174 383 240 30 0 chr6 34442471 34442571 -147972671 - LTR33 LTR ERVL -418 103 1 2150 114 10 0 chr6 34442628 34442934 -147972308 + AluSq SINE Alu 1 309 -4 254 308 58 25 chr6 34442973 34443093 -147972149 + MIR SINE MIR 77 200 -62 412 160 51 29 chr6 34443663 34443838 -147971404 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 272 200 15 15 chr6 34443854 34443919 -147971323 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 1731 209 65 32 chr6 34449084 34449182 -147966060 - Charlie4a DNA MER1_type -1453 508 415 2012 140 7 3 chr6 34449182 34449490 -147965752 + AluSx SINE Alu 1 309 -3 1731 209 65 32 chr6 34449490 34449883 -147965359 - Charlie4a DNA MER1_type -1546 415 1 576 303 48 63 chr6 34449887 34450061 -147965181 + L3 LINE CR1 681 856 -721 1535 183 37 27 chr6 34450061 34450356 -147964886 + AluJo SINE Alu 1 298 -4 576 303 48 63 chr6 34450356 34450594 -147964648 + L3 LINE CR1 856 1087 -490 2296 83 0 7 chr6 34450713 34451015 -147964227 - AluSg SINE Alu -10 300 1 1003 325 98 27 chr6 34451029 34451804 -147963438 + L2 LINE L2 2346 3174 -98 206 240 20 0 chr6 34451876 34451926 -147963316 + L3 LINE CR1 1295 1345 -232 * 303 274 138 37 chr6 34451925 34452138 -147963104 - MIR SINE MIR 0 262 28 2178 98 0 0 chr6 34452138 34452433 -147962809 - AluSg SINE Alu -15 295 1 303 274 138 37 chr6 34452433 34452448 -147962794 - MIR SINE MIR -234 28 16 1182 149 5 21 chr6 34452537 34452731 -147962511 + AluSg/x SINE Alu 90 280 -32 2008 136 0 16 chr6 34452770 34453087 -147962155 - AluJb SINE Alu 0 312 1 2051 128 13 0 chr6 34453180 34453485 -147961757 - AluSx SINE Alu -3 309 1 225 83 0 0 chr6 34453486 34453522 -147961720 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1954 106 14 14 chr6 34453522 34453806 -147961436 - AluSq SINE Alu -29 284 1 838 228 30 0 chr6 34453812 34453979 -147961263 - AluJo SINE Alu -21 291 120 1097 122 48 32 chr6 34453982 34454152 -147961090 - AluJb SINE Alu -1 311 136 2318 78 3 10 chr6 34454152 34454459 -147960783 - AluSq SINE Alu -6 307 3 1097 122 48 32 chr6 34454459 34454476 -147960766 - AluJb SINE Alu -176 136 121 257 183 0 28 chr6 34454559 34454630 -147960612 + CT-rich Low_complexity Low_complexity 1 69 0 1584 169 0 30 chr6 34454630 34454925 -147960317 - AluJo SINE Alu -26 286 1 225 154 0 0 chr6 34454927 34454966 -147960276 + T-rich Low_complexity Low_complexity 1 39 0 804 112 56 89 chr6 34455332 34455373 -147959869 - AluJo/FRAM SINE Alu -4 308 267 2146 131 0 6 chr6 34455373 34455687 -147959555 + AluSx SINE Alu 1 312 0 804 112 56 89 chr6 34455687 34455824 -147959418 - AluJo/FRAM SINE Alu -45 267 136 2275 87 6 3 chr6 34456143 34456455 -147958787 - AluSq SINE Alu 0 313 1 202 241 0 19 chr6 34456816 34456870 -147958372 + CT-rich Low_complexity Low_complexity 2 54 0 227 186 14 43 chr6 34457059 34457129 -147958113 + GA-rich Low_complexity Low_complexity 1 68 0 2132 128 0 3 chr6 34458953 34459266 -147955976 - AluSx SINE Alu 0 312 1 553 288 46 21 chr6 34461270 34461488 -147953754 + MIR SINE MIR 21 248 -14 23 0 0 0 chr6 34462856 34462879 -147952363 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr6 34465081 34465105 -147950137 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr6 34465105 34465128 -147950114 + AT_rich Low_complexity Low_complexity 1 23 0 182 237 0 0 chr6 34465446 34465484 -147949758 + L2 LINE L2 3225 3262 -10 894 269 25 12 chr6 34465904 34466146 -147949096 + MIR SINE MIR 13 257 -5 2197 84 3 0 chr6 34466684 34466993 -147948249 - AluSg SINE Alu 0 310 1 1150 92 0 65 chr6 34467615 34467799 -147947443 - AluSg/x SINE Alu -21 291 120 980 64 7 43 chr6 34467832 34467972 -147947270 - AluY SINE Alu -176 135 1 321 153 62 181 chr6 34467982 34468126 -147947116 + MER58 DNA MER1_type 211 2416 -4 225 239 282 0 chr6 34469009 34469080 -147946162 + L2 LINE L2 3183 3273 -40 342 224 49 104 chr6 34472354 34472537 -147942705 - MER5A DNA MER1_type 0 189 17 334 203 351 14 chr6 34473225 34473373 -147941869 + MIR SINE MIR 1 198 -64 29 28 0 0 chr6 34473441 34473477 -147941765 + AT_rich Low_complexity Low_complexity 1 36 0 233 319 0 0 chr6 34474768 34474837 -147940405 - MIR3 SINE MIR -19 189 121 197 276 0 92 chr6 34475477 34475544 -147939698 - MIR SINE MIR -58 204 145 1752 154 0 47 chr6 34475544 34475715 -147939527 - AluJb SINE Alu -8 304 153 2077 126 0 13 chr6 34475715 34476024 -147939218 - AluSx SINE Alu -7 305 1 1752 154 0 47 chr6 34476024 34476171 -147939071 - AluJb SINE Alu -159 153 1 197 276 0 92 chr6 34476171 34476190 -147939052 - MIR SINE MIR -117 145 126 408 278 144 37 chr6 34476229 34476499 -147938743 - MLT1J LTR MaLR -3 508 210 880 285 88 44 chr6 34476525 34476981 -147938261 - L2 LINE L2 -20 3293 2818 830 186 120 11 chr6 34477030 34477213 -147938029 - MER3 DNA MER1_type -6 203 1 181 286 36 0 chr6 34477213 34477269 -147937973 - L2 LINE L2 -504 2810 2753 833 215 93 15 chr6 34477269 34477474 -147937768 - MLT1J LTR MaLR -289 222 2 1998 100 30 17 chr6 34478079 34478378 -147936864 - AluSx SINE Alu -9 303 1 2665 103 11 0 chr6 34478639 34479016 -147936226 - LTR57 LTR ERVL -30 381 1 337 262 0 23 chr6 34479016 34479112 -147936130 - MIR SINE MIR -63 145 69 374 260 70 50 chr6 34479386 34479529 -147935713 + MIR SINE MIR 45 188 -63 464 130 0 0 chr6 34481087 34481164 -147934078 - HY1 scRNA scRNA 0 112 36 399 206 43 0 chr6 34481416 34481508 -147933734 - MIR SINE MIR -118 144 49 498 75 0 0 chr6 34481895 34481962 -147933280 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 1680 103 157 0 chr6 34481962 34482224 -147933018 - AluSq SINE Alu 0 303 1 283 306 95 7 chr6 34482240 34482387 -147932855 - MIR SINE MIR -37 225 66 980 284 116 14 chr6 34483823 34484136 -147931106 - L1M4 LINE L1 -1002 5144 4758 2370 70 0 7 chr6 34484136 34484436 -147930806 - AluSq SINE Alu -15 298 1 980 284 116 14 chr6 34484436 34484630 -147930612 - L1M4 LINE L1 -1388 4758 4585 247 228 13 38 chr6 34486078 34486157 -147929085 + MIR SINE MIR 89 165 -97 * 384 199 108 17 chr6 34486137 34486284 -147928958 - MIR SINE MIR 0 262 101 379 227 45 83 chr6 34486270 34486402 -147928840 + MIR SINE MIR 136 262 0 * 286 352 83 0 chr6 34486828 34486973 -147928269 + MIR3 SINE MIR 32 188 -20 252 306 102 36 chr6 34487288 34487484 -147927758 + MIR SINE MIR 20 228 -34 1078 189 32 23 chr6 34487681 34487898 -147927344 - MER20 DNA MER1_type 0 219 1 390 202 90 11 chr6 34488372 34488461 -147926781 - L2 LINE L2 -15 3298 3203 520 301 82 11 chr6 34489648 34489831 -147925411 + MER91A DNA MER1_type 1 196 0 2172 119 0 6 chr6 34489916 34490228 -147925014 - AluSx SINE Alu 0 312 3 289 285 131 0 chr6 34490232 34490362 -147924880 - MIR SINE MIR -66 196 50 262 389 8 24 chr6 34490530 34490656 -147924586 - MIR SINE MIR -16 246 123 441 265 137 25 chr6 34492191 34492327 -147922915 - L1ME4a LINE L1 0 6121 5953 678 157 96 0 chr6 34492327 34492442 -147922800 - FLAM_C SINE Alu -3 130 5 441 265 137 25 chr6 34492442 34492509 -147922733 - L1ME4a LINE L1 -168 5953 5895 372 114 63 0 chr6 34492652 34492731 -147922511 + CT-rich Low_complexity Low_complexity 5 88 0 1878 154 23 0 chr6 34492737 34493042 -147922200 - AluSx SINE Alu 0 312 1 438 181 53 0 chr6 34493711 34493805 -147921437 - L2 LINE L2 0 3313 3215 234 0 0 0 chr6 34493805 34493831 -147921411 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 1222 206 11 35 chr6 34493832 34494138 -147921104 + AluJb SINE Alu 9 307 0 2217 109 0 0 chr6 34494141 34494444 -147920798 + AluY SINE Alu 1 303 -8 184 317 77 10 chr6 34494474 34494578 -147920664 - L2 LINE L2 -158 3155 3045 299 361 48 7 chr6 34494738 34494890 -147920352 - MIR SINE MIR -67 195 37 281 320 31 16 chr6 34495000 34495128 -147920114 + MIR SINE MIR 83 212 -50 634 254 27 23 chr6 34495233 34495453 -147919789 + MIR SINE MIR 39 259 -3 194 377 0 0 chr6 34495457 34495534 -147919708 + MIR3 SINE MIR 79 155 -53 315 188 54 80 chr6 34502925 34503037 -147912205 + L1ME LINE L1 707 815 -5255 250 299 103 0 chr6 34504510 34504607 -147910635 - MIR SINE MIR -90 172 66 222 336 46 46 chr6 34506389 34506669 -147908573 + L2 LINE L2 2065 2344 -970 466 273 106 0 chr6 34506676 34506808 -147908434 - L2 LINE L2 -5 3267 3122 2047 132 10 0 chr6 34507112 34507416 -147907826 + AluSg SINE Alu 1 307 -3 740 188 0 15 chr6 34507428 34507561 -147907681 + FLAM_C SINE Alu 3 133 0 240 158 88 18 chr6 34507565 34507622 -147907620 - MER5A DNA MER1_type -128 61 1 533 246 24 62 chr6 34507781 34507992 -147907250 - HAL1 LINE L1 -6 2501 2299 1572 210 35 40 chr6 34508104 34508144 -147907098 + MLT1A2 LTR MaLR 1 40 -334 1621 139 40 33 chr6 34508144 34508445 -147906797 - AluJo SINE Alu -9 303 1 1572 210 35 40 chr6 34508445 34508780 -147906462 + MLT1A2 LTR MaLR 40 374 0 26 30 0 0 chr6 34508825 34508858 -147906384 + AT_rich Low_complexity Low_complexity 1 33 0 2279 100 0 3 chr6 34509146 34509455 -147905787 - AluSx SINE Alu -4 308 1 282 194 0 0 chr6 34509664 34509726 -147905516 + CT-rich Low_complexity Low_complexity 3 64 0 564 185 0 0 chr6 34509759 34509867 -147905375 - L1MB3 LINE L1 0 6183 6076 1945 116 39 0 chr6 34510449 34510756 -147904486 + AluSq SINE Alu 1 313 0 279 297 161 0 chr6 34511002 34511120 -147904122 + L2 LINE L2 3136 3272 0 665 161 12 12 chr6 34511247 34511408 -147903834 + GA-rich Low_complexity Low_complexity 3 163 0 276 100 0 0 chr6 34511427 34511467 -147903775 + (GGGGA)n Simple_repeat Simple_repeat 1 40 0 2353 93 3 0 chr6 34511783 34512095 -147903147 - AluSp SINE Alu 0 313 1 36426 68 9 4 chr6 34514842 34515979 -147899263 + HERVL-A1 LTR ERVL 879 2009 -3645 2310 101 10 0 chr6 34515979 34516276 -147898966 + AluSg SINE Alu 3 302 -8 36426 68 9 4 chr6 34516276 34519890 -147895352 + HERVL-A1 LTR ERVL 2009 5654 0 3121 59 86 0 chr6 34519890 34520299 -147894943 + MLT2A1 LTR ERVL 1 444 0 481 141 0 0 chr6 34520299 34520370 -147894872 - MSTA LTR MaLR -357 71 1 2103 201 62 85 chr6 34521673 34522355 -147892887 - LTR65 LTR ERV1 -3 666 1 209 103 26 0 chr6 34522440 34522471 -147892771 + GA-rich Low_complexity Low_complexity 1 35 -5 2324 92 3 0 chr6 34522471 34522764 -147892478 + AluSq SINE Alu 1 294 -19 532 348 20 25 chr6 34523560 34523804 -147891438 - MIR SINE MIR -5 257 15 2303 98 0 3 chr6 34523809 34524105 -147891137 - AluSg SINE Alu -15 295 1 630 144 32 0 chr6 34524191 34524316 -147890926 + L1MA7 LINE L1 6145 6273 -18 2980 198 163 13 chr6 34524333 34525081 -147890161 - MER21B LTR ERV1 -1 862 3 2151 129 26 0 chr6 34525139 34525441 -147889801 + AluSx SINE Alu 1 310 -2 593 268 32 11 chr6 34525484 34525674 -147889568 - L1ME3 LINE L1 -8 6154 5961 712 186 10 106 chr6 34525695 34525894 -147889348 - AluSg/x SINE Alu -13 299 120 860 136 8 15 chr6 34526003 34526135 -147889107 - AluJb SINE Alu -179 133 3 195 294 88 10 chr6 34526727 34526829 -147888413 - L2 LINE L2 -170 3143 3034 326 317 20 20 chr6 34527182 34527283 -147887959 + L1MEd LINE L1 442 542 -5577 271 256 37 12 chr6 34527484 34527566 -147887676 - MIR SINE MIR -15 247 164 312 248 45 98 chr6 34527837 34527970 -147887272 + L1MEd LINE L1 356 481 -5638 41 0 0 0 chr6 34528138 34528179 -147887063 + AT_rich Low_complexity Low_complexity 1 41 0 551 176 46 28 chr6 34528249 34528357 -147886885 + FRAM SINE Alu 22 131 -45 356 208 13 0 chr6 34528462 34528539 -147886703 + L1MEd LINE L1 758 835 -5284 21 0 0 0 chr6 34528552 34528573 -147886669 + AT_rich Low_complexity Low_complexity 1 21 0 4278 84 19 84 chr6 34528573 34529141 -147886101 - L1MA1 LINE L1 0 6302 5698 2227 107 13 13 chr6 34529141 34529451 -147885791 - AluSg SINE Alu 0 310 1 2420 110 0 0 chr6 34529455 34529765 -147885477 - AluSg SINE Alu 0 310 1 4278 84 19 84 chr6 34529765 34529926 -147885316 - L1MA1 LINE L1 -607 5695 5616 501 308 39 0 chr6 34529936 34530092 -147885150 + MLT1J LTR MaLR 16 177 -334 2123 169 40 26 chr6 34530733 34531159 -147884083 + MSTB1 LTR MaLR 1 432 0 506 265 112 18 chr6 34532660 34532830 -147882412 + MIR SINE MIR 2 187 -75 2135 138 3 0 chr6 34532870 34533174 -147882068 + AluSx SINE Alu 1 305 -7 2247 119 0 0 chr6 34533174 34533547 -147881695 + AluSx SINE Alu 1 373 0 348 259 82 37 chr6 34533835 34533970 -147881272 - MER5A DNA MER1_type -12 177 37 561 258 41 63 chr6 34534222 34534283 -147880959 + MIR SINE MIR 46 107 -155 2309 66 56 0 chr6 34534283 34534571 -147880671 - AluSp SINE Alu -9 304 1 561 258 41 63 chr6 34534571 34534730 -147880512 + MIR SINE MIR 107 261 -1 1580 135 8 35 chr6 34538042 34538302 -147876940 - AluJo SINE Alu -59 253 1 711 224 79 0 chr6 34538509 34538674 -147876568 + LTR47A LTR ERVL 275 452 0 327 333 18 23 chr6 34538691 34538862 -147876380 + LTR47A-int LTR ERVL 15 184 -5159 2049 128 24 0 chr6 34539838 34540126 -147875116 + AluSx SINE Alu 1 295 -17 2482 83 3 0 chr6 34540127 34540428 -147874814 + AluSq SINE Alu 1 302 -11 298 336 50 53 chr6 34540860 34541199 -147874043 + HERVL18 LTR ERVL 1523 1860 -4187 10064 27 0 112 chr6 34541215 34542651 -147872591 - SVA Other Other 0 1386 154 5556 77 3 15 chr6 34542927 34543407 -147871835 - L1PA13 LINE L1 0 6163 5694 2257 101 3 3 chr6 34543407 34543705 -147871537 - AluSp SINE Alu -15 298 1 5556 77 3 15 chr6 34543705 34543975 -147871267 - L1PA13 LINE L1 -469 5694 5422 443 100 0 0 chr6 34543975 34544035 -147871207 - AluSp/q SINE Alu -22 291 232 3482 152 2 3 chr6 34544035 34544735 -147870507 - L1PA13 LINE L1 -736 5438 4740 419 320 32 62 chr6 34544755 34544809 -147870433 + HERVL18 LTR ERVL 2314 2368 -2975 2346 110 0 0 chr6 34544809 34545118 -147870124 - AluSg SINE Alu -1 309 1 419 320 32 62 chr6 34545118 34545404 -147869838 + HERVL18 LTR ERVL 2368 2644 -2699 610 287 26 26 chr6 34545840 34546147 -147869095 + HERVL18 LTR ERVL 3275 3581 -2466 2474 74 7 0 chr6 34546376 34546673 -147868569 + AluSp SINE Alu 1 299 -14 207 0 0 0 chr6 34546673 34546696 -147868546 + (TA)n Simple_repeat Simple_repeat 2 24 0 570 193 126 0 chr6 34546706 34546825 -147868417 + AluJo SINE Alu 3 136 -176 200 315 0 0 chr6 34546978 34547032 -147868210 + L3 LINE CR1 567 620 -957 277 149 0 0 chr6 34547965 34548012 -147867230 + MER4B-int LTR ERV1 5922 5968 -790 1979 133 0 27 chr6 34548089 34548389 -147866853 + AluSx SINE Alu 21 312 0 574 182 0 58 chr6 34548764 34548885 -147866357 + MER4B-int LTR ERV1 5968 6081 -677 4284 128 184 109 chr6 34548936 34550237 -147865005 + pTR5 LTR ERV1 741 2438 0 599 181 54 60 chr6 34550447 34550552 -147864690 + LTR47A LTR ERVL 288 393 -59 2015 138 30 91 chr6 34550552 34550874 -147864368 - LTR47B LTR ERVL 0 443 158 1798 174 0 10 chr6 34550874 34551184 -147864058 + AluJo SINE Alu 1 307 -5 2015 138 30 91 chr6 34551184 34551333 -147863909 - LTR47B LTR ERVL -285 158 1 599 181 54 60 chr6 34551333 34551393 -147863849 + LTR47A LTR ERVL 393 452 0 364 329 79 35 chr6 34551672 34551900 -147863342 + HAL1 LINE L1 1114 1351 -1156 352 115 0 213 chr6 34551900 34551933 -147863309 + L1MB8 LINE L1 6080 6118 -60 2315 93 0 32 chr6 34551933 34552244 -147862998 - AluSx SINE Alu -11 301 1 352 115 0 213 chr6 34552244 34552265 -147862977 + L1MB8 LINE L1 6118 6142 -36 2168 115 0 40 chr6 34552265 34552445 -147862797 - AluSx SINE Alu -2 310 147 2595 11 0 0 chr6 34552445 34552722 -147862520 - AluYb8 SINE Alu -8 310 34 2168 115 0 40 chr6 34552722 34552864 -147862378 - AluSx SINE Alu -165 147 1 352 115 0 213 chr6 34552864 34552930 -147862312 + L1MB8 LINE L1 6142 6175 -3 2200 122 0 10 chr6 34552972 34553267 -147861975 + AluSx SINE Alu 1 292 -20 1761 262 77 95 chr6 34553597 34554521 -147860721 + Charlie2b DNA MER1_type 1 939 -1843 532 245 204 9 chr6 34554521 34554737 -147860505 + MIR SINE MIR 5 262 0 1761 262 77 95 chr6 34554737 34554754 -147860488 + Charlie2b DNA MER1_type 939 955 -1827 2245 116 3 0 chr6 34554754 34555056 -147860186 + AluSx SINE Alu 1 303 -9 1761 262 77 95 chr6 34555056 34555160 -147860082 + Charlie2b DNA MER1_type 955 1029 -1753 445 134 109 17 chr6 34555160 34555279 -147859963 + Charlie2b DNA MER1_type 2297 2426 -356 1180 144 43 0 chr6 34555280 34555488 -147859754 + L1MC1 LINE L1 5920 6136 -197 649 155 19 0 chr6 34555494 34555597 -147859645 + L1MC1 LINE L1 6223 6327 -6 778 224 44 72 chr6 34555677 34555798 -147859444 + Charlie2b DNA MER1_type 2425 2548 -314 884 141 0 30 chr6 34555798 34555933 -147859309 + FLAM_C SINE Alu 2 132 -1 778 224 44 72 chr6 34555933 34556173 -147859069 + Charlie2b DNA MER1_type 2548 2776 -6 737 268 24 6 chr6 34557070 34557234 -147858008 + MIR SINE MIR 11 177 -85 2184 97 27 27 chr6 34557470 34557770 -147857472 - AluSg SINE Alu 0 310 11 927 155 155 8 chr6 34557807 34558058 -147857184 - L1MA9 LINE L1 -5 6307 6020 21 57 0 0 chr6 34558143 34558178 -147857064 + AT_rich Low_complexity Low_complexity 1 35 0 871 136 0 0 chr6 34558182 34558300 -147856942 - FLAM_C SINE Alu -25 118 1 716 251 20 5 chr6 34558306 34558501 -147856741 - L1ME3 LINE L1 -62 6100 5903 4498 109 19 6 chr6 34560133 34560814 -147854428 - L1PB1 LINE L1 -2 6149 5460 398 253 41 89 chr6 34561416 34561562 -147853680 - L2 LINE L2 0 3272 3134 343 285 56 21 chr6 34561682 34561826 -147853416 + L2 LINE L2 1531 1679 -1635 191 307 20 89 chr6 34561829 34561930 -147853312 - MER5A DNA MER1_type -15 174 81 206 250 0 0 chr6 34562022 34562058 -147853184 + C-rich Low_complexity Low_complexity 1 39 -9 2179 117 3 3 chr6 34562058 34562358 -147852884 - AluSx SINE Alu -12 300 1 206 250 0 0 chr6 34562358 34562369 -147852873 + C-rich Low_complexity Low_complexity 38 48 0 898 216 0 0 chr6 34562597 34562759 -147852483 - FRAM SINE Alu -4 162 1 393 236 47 99 chr6 34562813 34563046 -147852196 - HAL1 LINE L1 -204 2303 2083 * 621 260 103 85 chr6 34563035 34563528 -147851714 - HAL1 LINE L1 -356 2151 1650 565 260 52 21 chr6 34563535 34563727 -147851515 - MLT1J1 LTR MaLR -7 439 242 1271 253 44 39 chr6 34563816 34564274 -147850968 - MER74B LTR ERVL -93 529 70 398 276 0 0 chr6 34564364 34564451 -147850791 - MLT1J1 LTR MaLR -324 122 36 2597 241 88 35 chr6 34564469 34565542 -147849700 - HAL1 LINE L1 -851 1656 527 6334 126 189 73 chr6 34565549 34567069 -147848173 + pTR5 LTR ERV1 742 2437 -1 355 285 74 83 chr6 34567082 34567528 -147847714 - HAL1 LINE L1 -1991 516 75 1394 293 150 31 chr6 34567566 34568371 -147846871 + L2 LINE L2 1822 2722 -592 2122 114 0 0 chr6 34568502 34568775 -147846467 + AluSx SINE Alu 1 273 -39 532 309 75 14 chr6 34568891 34569346 -147845896 + L1MEc LINE L1 1279 1882 -4725 726 71 0 10 chr6 34569372 34569471 -147845771 - AluSp SINE Alu -10 303 206 7396 127 68 119 chr6 34569471 34571259 -147843983 + pTR5 LTR ERV1 743 2438 0 1212 109 42 36 chr6 34571262 34571454 -147843788 - AluSp SINE Alu -104 209 17 1228 248 63 76 chr6 34571509 34571866 -147843376 + L1MEc LINE L1 1965 2325 -4282 2032 149 13 0 chr6 34571866 34572167 -147843075 + AluSx SINE Alu 6 310 -2 1228 248 63 76 chr6 34572167 34572265 -147842977 + L1MEc LINE L1 2325 2423 -4184 1656 199 0 30 chr6 34572265 34572566 -147842676 + AluJb SINE Alu 1 292 -20 1228 248 63 76 chr6 34572566 34572886 -147842356 + L1MEc LINE L1 2423 2731 -3876 * 1901 246 107 0 chr6 34572866 34573447 -147841795 + L1MC4 LINE L1 7257 7899 -143 638 301 169 41 chr6 34573744 34573902 -147841340 + L2 LINE L2 2841 2977 -336 2072 92 82 0 chr6 34573902 34574183 -147841059 - AluSp SINE Alu -9 304 1 638 301 169 41 chr6 34574183 34574443 -147840799 + L2 LINE L2 2977 3313 0 2545 70 0 0 chr6 34579271 34579570 -147835672 + AluY SINE Alu 1 299 -12 831 248 81 14 chr6 34579836 34580046 -147835196 + MER58A DNA MER1_type 1 224 0 2130 141 3 0 chr6 34580560 34580894 -147834348 - L1PB1 LINE L1 -5 6146 5812 2053 157 3 0 chr6 34581920 34582226 -147833016 + AluSx SINE Alu 1 307 -5 730 127 18 30 chr6 34582231 34582396 -147832846 + GA-rich Low_complexity Low_complexity 1 163 0 935 226 55 0 chr6 34582653 34582852 -147832390 - MER63A DNA MER1_type 0 210 1 459 364 62 4 chr6 34583051 34583276 -147831966 - MIR SINE MIR -17 245 8 224 207 0 134 chr6 34584488 34584550 -147830692 - MIR SINE MIR -14 248 198 2421 77 0 7 chr6 34584550 34584848 -147830394 + AluSx SINE Alu 1 296 -16 224 207 0 134 chr6 34584848 34584867 -147830375 - MIR SINE MIR -64 198 178 3082 236 49 29 chr6 34584867 34585965 -147829277 + L1ME3 LINE L1 5054 6162 0 2789 290 63 20 chr6 34586004 34587089 -147828153 - ERVL LTR ERVL -1230 4534 3404 323 320 24 8 chr6 34587133 34587258 -147827984 - ERVL LTR ERVL -2379 3275 3149 2036 136 7 23 chr6 34587361 34587670 -147827572 - AluSx SINE Alu -8 304 1 617 349 131 22 chr6 34587864 34588452 -147826790 - ERVL LTR ERVL -3927 1837 1186 1093 234 56 0 chr6 34588526 34588812 -147826430 - MLT1E3 LTR MaLR 0 624 323 2669 176 47 16 chr6 34588863 34589057 -147826185 + MLT1D LTR MaLR 1 188 -317 2215 121 0 0 chr6 34589057 34589355 -147825887 + AluSg SINE Alu 1 298 -12 2669 176 47 16 chr6 34589355 34589650 -147825592 + MLT1D LTR MaLR 188 505 0 340 308 10 10 chr6 34589744 34589848 -147825394 - ERVL LTR ERVL -5061 703 600 358 251 0 19 chr6 34590374 34590499 -147824743 - LTR33A LTR ERVL 0 523 443 697 279 88 38 chr6 34591483 34591504 -147823738 + MIR SINE MIR 11 30 -232 2296 114 0 0 chr6 34591504 34591802 -147823440 + AluSx SINE Alu 1 298 -14 697 279 88 38 chr6 34591802 34592020 -147823222 + MIR SINE MIR 29 262 0 2053 128 24 3 chr6 34592421 34592711 -147822531 + AluJb SINE Alu 1 296 -16 2536 67 0 3 chr6 34592713 34593025 -147822217 + AluY SINE Alu 1 311 0 229 170 21 0 chr6 34593421 34593468 -147821774 + MER63 DNA MER1_type 6 53 -877 * 1341 239 55 0 chr6 34593446 34593789 -147821453 + MER63 DNA MER1_type 699 1060 0 2260 133 0 0 chr6 34594366 34594675 -147820567 - AluSg SINE Alu -1 309 1 341 293 248 8 chr6 34595281 34595523 -147819719 - L3 LINE CR1 -17 1560 1261 2151 107 7 10 chr6 34595967 34596265 -147818977 - AluSx SINE Alu -15 297 1 946 274 17 9 chr6 34596544 34596774 -147818468 + MIR SINE MIR 31 262 0 2144 137 0 10 chr6 34598710 34599016 -147816226 + AluSx SINE Alu 1 303 -9 933 186 76 57 chr6 34599046 34599249 -147815993 + L1ME2 LINE L1 5887 6098 -66 2093 163 0 0 chr6 34599249 34599555 -147815687 + AluJb SINE Alu 1 306 -6 933 186 76 57 chr6 34599555 34599615 -147815627 + L1ME2 LINE L1 6098 6155 -9 26 0 0 0 chr6 34599653 34599679 -147815563 + AT_rich Low_complexity Low_complexity 1 26 0 349 308 204 36 chr6 34599796 34600153 -147815089 - L2 LINE L2 0 3272 2856 1881 154 45 3 chr6 34600414 34600706 -147814536 + AluJo SINE Alu 1 304 -8 1363 272 133 32 chr6 34601150 34601516 -147813726 + L1MD3 LINE L1 5896 6224 -1771 1731 161 50 17 chr6 34601516 34601814 -147813428 + AluJo SINE Alu 1 308 -4 1363 272 133 32 chr6 34601814 34602094 -147813148 + L1MD3 LINE L1 6224 6607 -1388 1586 136 168 0 chr6 34602098 34602407 -147812835 + MER46B DNA MER2_type 1 236 0 1097 248 33 13 chr6 34602408 34602707 -147812535 + L1MC4 LINE L1 6624 6928 -1114 2068 132 6 10 chr6 34602708 34603019 -147812223 + AluSp SINE Alu 1 310 -3 1782 201 0 0 chr6 34603034 34603332 -147811910 + AluJo SINE Alu 1 298 -14 894 186 48 12 chr6 34603345 34603512 -147811730 + FRAM SINE Alu 1 169 -7 1166 156 54 0 chr6 34603512 34603736 -147811506 + L1MD3 LINE L1 6889 7124 -871 1014 130 0 0 chr6 34603759 34603897 -147811345 + AluSp SINE Alu 153 290 -23 587 173 86 0 chr6 34603949 34604088 -147811154 + L1MD3 LINE L1 7845 7995 0 262 183 17 17 chr6 34604111 34604171 -147811071 + L1ME1 LINE L1 6096 6155 -11 1954 135 0 11 chr6 34604287 34604569 -147810673 + AluJb SINE Alu 2 280 -32 810 81 0 0 chr6 34604571 34604682 -147810560 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2149 103 59 18 chr6 34605018 34605359 -147809883 + THE1A LTR MaLR 1 355 0 1633 195 0 7 chr6 34606445 34606742 -147808500 + AluJo SINE Alu 18 312 0 2235 129 0 0 chr6 34606752 34607055 -147808187 + AluSx SINE Alu 1 303 -9 510 17 0 0 chr6 34607071 34607130 -147808112 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 3338 133 18 6 chr6 34608953 34609442 -147805800 - LTR42 LTR ERVL 0 495 1 2238 104 3 7 chr6 34610294 34610592 -147804650 + AluSg SINE Alu 1 297 -13 2415 71 3 3 chr6 34611278 34611572 -147803670 - AluSq SINE Alu -19 294 1 2259 91 7 0 chr6 34612251 34612536 -147802706 - AluSx SINE Alu -25 287 1 406 244 82 110 chr6 34613138 34613466 -147801776 + MLT1J LTR MaLR 109 427 -84 2015 151 6 6 chr6 34614168 34614503 -147800739 + AluJb SINE Alu 1 335 0 2114 149 0 3 chr6 34614505 34614813 -147800429 + AluJo SINE Alu 1 307 -5 342 238 90 58 chr6 34615718 34615907 -147799335 + L2 LINE L2 3030 3224 -89 2152 112 0 3 chr6 34616013 34616316 -147798926 + AluSx SINE Alu 5 306 -6 625 177 24 8 chr6 34616328 34616452 -147798790 + FLAM_C SINE Alu 3 128 -5 513 266 8 0 chr6 34616467 34616591 -147798651 + MER104 DNA Tc2 53 177 -3 2234 102 0 0 chr6 34616685 34616980 -147798262 - AluSg SINE Alu -15 295 1 233 329 12 12 chr6 34617141 34617226 -147798016 - L2 LINE L2 -179 3093 3009 468 284 43 81 chr6 34617231 34617442 -147797800 - MIR SINE MIR -30 232 30 200 355 84 0 chr6 34617483 34617590 -147797652 - L3b LINE CR1 -289 1294 1179 199 231 0 0 chr6 34617622 34617661 -147797581 - L2 LINE L2 -81 3191 3153 10414 44 5 61 chr6 34618010 34619475 -147795767 - SVA Other Other -1 1385 3 894 71 39 50 chr6 34619493 34619675 -147795567 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr6 34619675 34619699 -147795543 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 597 251 30 12 chr6 34620610 34620777 -147794465 - MER104 DNA Tc2 -7 173 4 787 153 0 0 chr6 34620809 34620927 -147794315 + FLAM_C SINE Alu 5 122 -21 270 136 0 0 chr6 34620927 34620971 -147794271 + (TA)n Simple_repeat Simple_repeat 1 44 0 284 322 76 17 chr6 34621054 34621172 -147794070 - L2 LINE L2 0 3313 3189 227 264 111 14 chr6 34621241 34621313 -147793929 + MIR3 SINE MIR 5 83 -125 657 69 0 0 chr6 34621480 34621567 -147793675 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 25 31 0 0 chr6 34621596 34621628 -147793614 + AT_rich Low_complexity Low_complexity 1 32 0 1318 196 0 24 chr6 34621628 34621883 -147793359 - AluJb SINE Alu -57 255 7 2060 98 0 33 chr6 34622883 34623188 -147792054 + AluSq SINE Alu 1 295 -18 1528 171 49 3 chr6 34623280 34623584 -147791658 + MER33 DNA MER1_type 1 318 -6 226 289 112 20 chr6 34624228 34624380 -147790862 + L1ME4a LINE L1 5616 5781 -340 1589 106 113 4 chr6 34624488 34624765 -147790477 + AluSx SINE Alu 1 305 0 1705 151 122 82 chr6 34624915 34624950 -147790292 - MLT2D LTR ERVL 0 414 382 228 35 0 0 chr6 34624950 34624979 -147790263 + (TC)n Simple_repeat Simple_repeat 1 29 0 1705 151 122 82 chr6 34624979 34625335 -147789907 - MLT2D LTR ERVL -32 382 7 1722 167 0 17 chr6 34625338 34625631 -147789611 + AluJb SINE Alu 1 288 -24 35 24 0 0 chr6 34625631 34625673 -147789569 + AT_rich Low_complexity Low_complexity 1 42 0 1263 206 0 40 chr6 34626279 34626527 -147788715 - MER8 DNA MER2_type -1 238 1 2030 109 10 3 chr6 34626536 34626839 -147788403 - AluSx SINE Alu -7 305 1 877 203 27 0 chr6 34627150 34627337 -147787905 + AluJo SINE Alu 121 312 0 366 250 20 40 chr6 34627337 34627437 -147787805 + L1ME4a LINE L1 5966 6063 -58 1734 148 13 10 chr6 34627453 34627751 -147787491 - AluJb SINE Alu -13 299 1 1753 166 0 7 chr6 34627755 34628076 -147787166 - AluJb SINE Alu 0 319 1 1993 110 0 26 chr6 34628595 34628904 -147786338 - AluSp SINE Alu -12 301 1 538 281 116 36 chr6 34628922 34629023 -147786219 + HAL1 LINE L1 17 109 -2398 239 0 32 0 chr6 34629023 34629054 -147786188 + (GA)n Simple_repeat Simple_repeat 1 32 0 538 281 116 36 chr6 34629054 34629365 -147785877 + HAL1 LINE L1 109 462 -2045 833 165 0 8 chr6 34629412 34629545 -147785697 + FLAM_C SINE Alu 1 132 -1 199 131 36 36 chr6 34629597 34629681 -147785561 + A-rich Low_complexity Low_complexity 2 85 0 349 374 35 0 chr6 34629690 34629864 -147785378 + HAL1 LINE L1 541 720 -1787 707 214 197 52 chr6 34629907 34630369 -147784873 + LTR50 LTR ERVL 93 744 -51 2179 99 7 0 chr6 34630369 34630671 -147784571 + AluSq SINE Alu 3 306 -7 707 214 197 52 chr6 34630671 34630723 -147784519 + LTR50 LTR ERVL 744 787 -8 251 158 85 85 chr6 34630880 34630962 -147784280 - LTR41 LTR ERVL -41 732 651 594 226 94 19 chr6 34631327 34631486 -147783756 - LTR41 LTR ERVL -594 179 9 404 265 53 69 chr6 34631489 34631561 -147783681 + HAL1 LINE L1 851 923 -1584 1651 167 30 3 chr6 34631561 34631861 -147783381 + AluJb SINE Alu 1 308 -4 404 265 53 69 chr6 34631861 34631977 -147783265 + HAL1 LINE L1 923 1036 -1471 1394 229 99 84 chr6 34631980 34632033 -147783209 + HAL1 LINE L1 1120 1171 -1336 1934 127 33 7 chr6 34632033 34632332 -147782910 + AluSx SINE Alu 1 307 -5 1394 229 99 84 chr6 34632332 34632664 -147782578 + HAL1 LINE L1 1171 1522 -985 1670 157 24 34 chr6 34632664 34632958 -147782284 - AluJo SINE Alu -2 310 20 1394 229 99 84 chr6 34632958 34633260 -147781982 + HAL1 LINE L1 1522 1818 -689 1789 148 23 13 chr6 34633300 34633605 -147781637 + AluSx SINE Alu 1 308 -4 268 283 67 8 chr6 34633834 34633954 -147781288 + LTR67 LTR ERVL 431 557 0 22 56 0 0 chr6 34634148 34634184 -147781058 + AT_rich Low_complexity Low_complexity 1 36 0 1170 99 0 12 chr6 34634236 34634398 -147780844 + AluSq SINE Alu 1 160 -153 523 62 0 0 chr6 34634440 34634504 -147780738 + U6 snRNA snRNA 38 101 -6 1882 126 0 23 chr6 34634521 34634822 -147780420 + AluSq SINE Alu 3 296 -17 2026 97 4 0 chr6 34635807 34636121 -147779121 - AluSq SINE Alu 0 319 5 541 207 37 0 chr6 34636176 34636311 -147778931 - L1MD3 LINE L1 -12 7983 7844 767 332 77 16 chr6 34636896 34637206 -147778036 + MER115 DNA AcHobo 6 334 -359 753 237 6 35 chr6 34637276 34637359 -147777883 + MER115 DNA AcHobo 445 522 -171 679 217 91 98 chr6 34637359 34637581 -147777661 - LTR16A1 LTR ERVL 0 457 235 2062 92 0 7 chr6 34637581 34637893 -147777349 + AluSq SINE Alu 1 310 0 679 217 91 98 chr6 34637893 34638129 -147777113 - LTR16A1 LTR ERVL -222 235 1 753 237 6 35 chr6 34638129 34638218 -147777024 + MER115 DNA AcHobo 522 612 -81 309 226 116 110 chr6 34638778 34638924 -147776318 + L1MC5 LINE L1 7779 7925 -36 921 88 0 22 chr6 34639245 34639381 -147775861 + FLAM_C SINE Alu 1 133 0 711 132 20 123 chr6 34639417 34639486 -147775756 + L1MB4 LINE L1 5765 5839 -341 207 0 0 0 chr6 34639486 34639509 -147775733 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2124 74 0 11 chr6 34639511 34639794 -147775448 - AluSx SINE Alu -31 281 2 711 132 20 123 chr6 34639794 34639925 -147775317 + L1MB4 LINE L1 5840 5947 -233 794 140 0 70 chr6 34639995 34640138 -147775104 + FLAM_C SINE Alu 1 133 0 981 166 5 55 chr6 34640146 34640323 -147774919 + L1MB4 LINE L1 5961 6145 -35 2105 96 0 0 chr6 34640323 34640604 -147774638 + AluSx SINE Alu 1 281 -31 225 0 0 0 chr6 34640608 34640633 -147774609 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 981 166 5 55 chr6 34640633 34640667 -147774575 + L1MB4 LINE L1 6148 6166 -14 371 113 16 0 chr6 34640677 34640739 -147774503 + (CA)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr6 34640791 34640815 -147774427 + AT_rich Low_complexity Low_complexity 1 24 0 716 173 17 23 chr6 34640837 34641010 -147774232 - L1MB4 LINE L1 -233 5947 5776 1855 138 3 0 chr6 34641025 34641307 -147773935 + AluJb SINE Alu 1 283 -29 31 26 0 0 chr6 34641307 34641345 -147773897 + AT_rich Low_complexity Low_complexity 1 38 0 2202 105 0 0 chr6 34641345 34641651 -147773591 - AluSp SINE Alu -7 306 1 303 258 114 74 chr6 34641682 34641980 -147773262 + L1M2 LINE L1 1743 2052 -4797 1174 150 4 53 chr6 34642066 34642313 -147772929 + AluJo SINE Alu 1 235 -77 1897 130 65 6 chr6 34642524 34642848 -147772394 + MER61A LTR ERV1 1 343 0 670 120 96 32 chr6 34643264 34643389 -147771853 + FLAM_C SINE Alu 1 133 0 509 205 86 8 chr6 34643775 34643892 -147771350 + MIR SINE MIR 70 195 -67 1728 115 48 24 chr6 34643894 34644031 -147771211 + AluSx SINE Alu 1 133 -179 2208 96 20 0 chr6 34644031 34644332 -147770910 + AluSx SINE Alu 1 307 -5 1728 115 48 24 chr6 34644332 34644489 -147770753 + AluSx SINE Alu 133 302 -10 513 268 32 25 chr6 34644505 34644662 -147770580 - MIR SINE MIR 0 262 105 405 0 0 0 chr6 34645245 34645290 -147769952 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2013 116 0 0 chr6 34645298 34645575 -147769667 - AluSx SINE Alu -35 277 1 809 104 22 44 chr6 34646418 34646553 -147768689 - MLT1B LTR MaLR -243 147 16 1602 157 11 31 chr6 34646940 34647251 -147767991 + AluJb SINE Alu 1 305 0 359 291 11 84 chr6 34647303 34647482 -147767760 + L1MC4 LINE L1 6765 6930 -1112 1644 168 27 3 chr6 34647482 34647780 -147767462 + AluJb SINE Alu 1 305 -7 381 43 0 0 chr6 34647792 34647839 -147767403 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 225 222 0 0 chr6 34647858 34647903 -147767339 + L1MC4a LINE L1 6848 6892 -916 25 0 0 0 chr6 34648062 34648087 -147767155 + AT_rich Low_complexity Low_complexity 1 25 0 4555 119 17 33 chr6 34648209 34648699 -147766543 + MER50 LTR ERV1 1 477 -257 2315 93 7 0 chr6 34648699 34649009 -147766233 + AluSx SINE Alu 1 312 0 4555 119 17 33 chr6 34649009 34649241 -147766001 + MER50 LTR ERV1 477 711 -23 2168 119 0 0 chr6 34649598 34649910 -147765332 - AluSx SINE Alu 0 312 1 3715 158 11 35 chr6 34649966 34650254 -147764988 + L1MB8 LINE L1 5432 5725 -453 198 103 0 0 chr6 34650254 34650283 -147764959 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3715 158 11 35 chr6 34650283 34650689 -147764553 + L1MB8 LINE L1 5725 6110 -68 2118 88 3 3 chr6 34650703 34651055 -147764187 - AluSp SINE Alu 0 352 1 4077 90 16 20 chr6 34651080 34651274 -147763968 - L1MA2 LINE L1 0 6304 6111 1899 150 0 0 chr6 34651274 34651574 -147763668 + AluSx SINE Alu 1 300 -12 4077 90 16 20 chr6 34651574 34651989 -147763253 - L1MA2 LINE L1 -193 6111 5697 11377 183 74 52 chr6 34651989 34652777 -147762465 - L1M1 LINE L1 -4385 3180 2410 1883 155 0 19 chr6 34652777 34653094 -147762148 + AluSx SINE Alu 1 311 -1 11377 183 74 52 chr6 34653094 34653253 -147761989 - L1M1 LINE L1 -5155 2410 2256 2180 99 0 7 chr6 34653253 34653555 -147761687 - AluSc SINE Alu -9 300 1 11377 183 74 52 chr6 34653555 34654310 -147760932 - L1M1 LINE L1 -5309 2256 1519 1956 130 7 0 chr6 34654310 34654609 -147760633 + AluSx SINE Alu 1 301 -11 11377 183 74 52 chr6 34654609 34655403 -147759839 - L1M1 LINE L1 -6046 1519 506 800 182 0 0 chr6 34655403 34655535 -147759707 - FLAM_C SINE Alu -1 132 1 11377 183 74 52 chr6 34655535 34655979 -147759263 - L1M1 LINE L1 -7059 506 73 1682 177 20 0 chr6 34655980 34656274 -147758968 + AluJb SINE Alu 1 300 -12 2147 102 3 0 chr6 34656297 34656590 -147758652 + AluSq SINE Alu 1 294 -19 2248 97 0 0 chr6 34656650 34656948 -147758294 - AluSq SINE Alu -15 298 1 2224 60 4 4 chr6 34657004 34657332 -147757910 + AluY SINE Alu 1 328 0 2192 88 3 3 chr6 34657825 34658132 -147757110 + AluSc SINE Alu 1 307 -2 815 111 8 8 chr6 34658282 34658420 -147756822 + FLAM_C SINE Alu 1 138 0 437 228 41 76 chr6 34658847 34659033 -147756209 - MIR SINE MIR -27 181 33 1999 109 4 0 chr6 34659204 34659534 -147755708 - AluSq SINE Alu 0 341 11 231 36 0 0 chr6 34659534 34659562 -147755680 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 829 190 19 0 chr6 34659564 34659722 -147755520 - AluJ SINE Alu -38 274 114 1823 118 74 0 chr6 34659747 34660017 -147755225 - AluSg SINE Alu -20 290 1 835 138 7 22 chr6 34660046 34660184 -147755058 - AluJ SINE Alu -174 138 3 339 324 58 12 chr6 34660343 34660516 -147754726 + MIR SINE MIR 82 262 0 411 308 79 18 chr6 34660550 34660655 -147754587 + MIR SINE MIR 30 149 -113 1976 78 44 34 chr6 34660655 34660948 -147754294 - AluSx SINE Alu -16 296 1 411 308 79 18 chr6 34660948 34661017 -147754225 + MIR SINE MIR 149 212 -50 463 240 0 0 chr6 34661200 34661300 -147753942 - L2 LINE L2 -25 3288 3189 1869 208 48 56 chr6 34664525 34665024 -147750218 - MLT1D LTR MaLR -9 496 2 225 188 71 35 chr6 34665155 34665240 -147750002 + L1MC5 LINE L1 7839 7926 -35 210 37 0 0 chr6 34666354 34666381 -147748861 + (GGGGA)n Simple_repeat Simple_repeat 2 28 0 764 123 35 0 chr6 34669242 34669356 -147745886 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr6 34669361 34669388 -147745854 + AT_rich Low_complexity Low_complexity 1 27 0 258 264 57 57 chr6 34670139 34670245 -147744997 + MIR SINE MIR 95 200 -62 2076 136 13 3 chr6 34670260 34670569 -147744673 - AluSq SINE Alu -1 312 1 686 281 23 65 chr6 34670858 34671042 -147744200 + MIR SINE MIR 14 185 -77 2019 126 3 26 chr6 34671042 34671352 -147743890 + AluSx SINE Alu 1 303 -9 686 281 23 65 chr6 34671352 34671427 -147743815 + MIR SINE MIR 185 262 0 375 333 111 5 chr6 34671469 34671711 -147743531 - MIR SINE MIR 0 262 1 439 245 182 0 chr6 34673212 34673355 -147741887 + MER3 DNA MER1_type 27 195 -14 460 321 73 24 chr6 34673493 34673658 -147741584 + MIR SINE MIR 20 192 -70 2218 92 0 7 chr6 34673920 34674215 -147741027 + AluSq SINE Alu 1 293 -20 248 93 23 0 chr6 34675633 34675676 -147739566 + Alu SINE Alu 16 59 -116 495 338 68 32 chr6 34675737 34675956 -147739286 - MIR SINE MIR -8 254 28 2114 110 7 0 chr6 34676113 34676404 -147738838 + AluSx SINE Alu 1 293 -19 432 0 0 0 chr6 34678987 34679035 -147736207 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1665 86 0 0 chr6 34679056 34679265 -147735977 + AluSq SINE Alu 82 290 -23 334 295 6 66 chr6 34679290 34679456 -147735786 + L2 LINE L2 3095 3250 -63 234 291 105 12 chr6 34679836 34679922 -147735320 - MIR3 SINE MIR -112 96 3 286 303 97 35 chr6 34680288 34680433 -147734809 + L2 LINE L2 3119 3272 0 296 341 40 40 chr6 34681027 34681203 -147734039 + MIR SINE MIR 32 207 -55 198 374 74 12 chr6 34681146 34681309 -147733933 - L2 LINE L2 -20 3293 3121 * 1045 142 0 12 chr6 34681384 34681546 -147733696 + AluJb SINE Alu 134 293 -19 180 0 0 0 chr6 34681546 34681566 -147733676 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1506 158 57 57 chr6 34681705 34681854 -147733388 - AluJo SINE Alu -14 298 150 2177 59 42 7 chr6 34681854 34682142 -147733100 - AluY SINE Alu -12 299 2 1506 158 57 57 chr6 34682142 34682290 -147732952 - AluJo SINE Alu -161 151 1 812 175 7 14 chr6 34682291 34682434 -147732808 - FLAM_A SINE Alu 0 142 1 240 250 0 0 chr6 34682438 34682494 -147732748 - FAM SINE Alu -2 173 118 2225 99 0 19 chr6 34682754 34683067 -147732175 + AluSg SINE Alu 1 307 -3 515 243 112 56 chr6 34683073 34683287 -147731955 + MIR SINE MIR 6 231 -31 328 175 16 0 chr6 34683332 34683395 -147731847 - LTR16C LTR ERVL -2 489 426 1626 150 62 0 chr6 34683408 34683682 -147731560 + AluJb SINE Alu 1 291 -21 2166 108 0 3 chr6 34683684 34683972 -147731270 + AluSx SINE Alu 1 287 -25 234 0 0 0 chr6 34683975 34684001 -147731241 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1881 169 3 0 chr6 34684012 34684307 -147730935 + AluJo SINE Alu 1 296 -16 214 311 220 10 chr6 34684631 34684840 -147730402 - L2 LINE L2 -88 3184 2932 21 36 0 0 chr6 34685208 34685236 -147730006 + AT_rich Low_complexity Low_complexity 1 28 0 2244 95 0 7 chr6 34685418 34685722 -147729520 - AluSx SINE Alu -7 305 4 2444 60 0 10 chr6 34685735 34686049 -147729193 - AluY SINE Alu 0 311 1 308 183 29 203 chr6 34686225 34686266 -147728976 - Charlie2 DNA MER1_type -28 2834 2788 1809 157 7 3 chr6 34686266 34686560 -147728682 - AluJb SINE Alu -17 295 1 308 183 29 203 chr6 34686560 34686665 -147728577 - Charlie2 DNA MER1_type -74 2788 2765 1764 105 82 8 chr6 34686665 34686961 -147728281 - AluSx SINE Alu 0 316 1 308 183 29 203 chr6 34686961 34687122 -147728120 - Charlie2 DNA MER1_type -97 2765 2578 1632 154 19 68 chr6 34687199 34687524 -147727718 + AluJb SINE Alu 1 309 -3 2059 137 0 13 chr6 34687549 34687864 -147727378 + AluSx SINE Alu 1 311 -1 363 237 0 0 chr6 34687988 34688064 -147727178 - Charlie2 DNA MER1_type -2681 101 26 2339 78 7 0 chr6 34688313 34688620 -147726622 + AluSg SINE Alu 1 309 -1 2433 52 10 3 chr6 34688620 34688927 -147726315 + AluY SINE Alu 1 310 -1 197 0 71 0 chr6 34689797 34689825 -147725417 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 218 329 185 41 chr6 34691414 34691776 -147723466 + L2 LINE L2 2301 2714 -600 2274 73 7 20 chr6 34691780 34692080 -147723162 + AluSp SINE Alu 1 296 -17 406 157 129 0 chr6 34692097 34692167 -147723075 + AluJ/FLAM SINE Alu 1 79 -233 1351 146 39 39 chr6 34692520 34692774 -147722468 - AluJo SINE Alu -32 280 27 962 63 24 0 chr6 34692774 34692900 -147722342 + AluSp/q SINE Alu 167 295 -18 2177 115 3 3 chr6 34692948 34693260 -147721982 - AluSx SINE Alu 0 312 1 212 247 253 47 chr6 34693396 34693566 -147721676 + L2 LINE L2 3001 3205 -108 433 285 126 61 chr6 34695082 34695221 -147720021 + L1MC4 LINE L1 7716 7845 -197 2078 113 3 0 chr6 34695221 34695514 -147719728 + AluSc SINE Alu 6 299 -10 433 285 126 61 chr6 34695514 34695637 -147719605 + L1MC4 LINE L1 7845 7995 -47 1760 164 0 3 chr6 34695639 34695932 -147719310 - AluSx SINE Alu -20 292 1 318 148 16 0 chr6 34695932 34695993 -147719249 + L1ME3A LINE L1 6043 6104 -66 2051 119 7 3 chr6 34697501 34697803 -147717439 + AluSx SINE Alu 1 303 -9 2291 82 0 3 chr6 34698556 34698850 -147716392 + AluSg SINE Alu 1 293 -17 2086 94 7 42 chr6 34699109 34699418 -147715824 + AluSx SINE Alu 1 298 -14 2335 94 0 3 chr6 34700300 34700607 -147714635 + AluSx SINE Alu 7 312 0 255 217 0 58 chr6 34700754 34700823 -147714419 + L2 LINE L2 3015 3079 -234 1675 152 3 21 chr6 34700853 34701142 -147714100 - AluJb SINE Alu -4 308 25 673 94 0 0 chr6 34701146 34701231 -147714011 + AluS SINE Alu 3 87 -226 383 268 256 6 chr6 34701262 34701426 -147713816 + L2 LINE L2 3106 3310 -3 261 306 174 26 chr6 34702612 34702877 -147712365 + L2 LINE L2 2386 2689 -625 327 300 110 20 chr6 34703026 34703226 -147712016 + L2 LINE L2 3024 3241 -72 189 313 8 90 chr6 34703301 34703435 -147711807 + L2 LINE L2 2624 2746 -568 2294 56 49 0 chr6 34703438 34703726 -147711516 + AluY SINE Alu 1 302 -9 2196 125 0 0 chr6 34703760 34704064 -147711178 - AluSx SINE Alu -8 304 1 873 118 0 8 chr6 34704082 34704201 -147711041 - FLAM_C SINE Alu -15 118 1 1667 120 80 11 chr6 34704423 34704699 -147710543 - AluSx SINE Alu -17 295 1 573 292 84 34 chr6 34704704 34705000 -147710242 - L1M LINE L1 -813 5333 5039 2239 108 0 0 chr6 34705001 34705296 -147709946 - AluSg SINE Alu -13 297 3 225 295 49 98 chr6 34705318 34705501 -147709741 + L2 LINE L2 3024 3197 -75 21 0 0 0 chr6 34706564 34706585 -147708657 + AT_rich Low_complexity Low_complexity 1 21 0 2463 66 0 0 chr6 34706741 34707043 -147708199 + AluY SINE Alu 1 302 -9 1603 195 20 0 chr6 34707210 34707507 -147707735 - AluJo SINE Alu -9 303 1 326 313 61 9 chr6 34707539 34707654 -147707588 - MIR3 SINE MIR -84 124 4 467 152 254 22 chr6 34711623 34711761 -147703481 - MIR SINE MIR -1 261 92 856 112 8 8 chr6 34711762 34711887 -147703355 + AluJb SINE Alu 1 125 -187 22 0 0 0 chr6 34711887 34711909 -147703333 + AT_rich Low_complexity Low_complexity 1 22 0 2214 92 0 16 chr6 34711911 34712215 -147703027 + AluSg SINE Alu 3 301 -9 302 188 0 0 chr6 34712216 34712264 -147702978 - MIR SINE MIR -163 99 52 2273 104 7 0 chr6 34712311 34712619 -147702623 + AluSg SINE Alu 1 310 0 183 245 61 0 chr6 34715628 34715677 -147699565 + MIR SINE MIR 45 96 -112 2513 77 0 0 chr6 34717824 34718121 -147697121 + AluSg SINE Alu 2 298 -12 507 115 48 29 chr6 34718559 34718663 -147696579 + MER50 LTR ERV1 499 604 -130 667 164 0 9 chr6 34718691 34718801 -147696441 + FLAM_C SINE Alu 2 110 -33 25 0 0 0 chr6 34718832 34718857 -147696385 + AT_rich Low_complexity Low_complexity 1 25 0 2190 130 3 0 chr6 34718875 34719175 -147696067 + AluSx SINE Alu 3 303 -9 1988 118 33 0 chr6 34719409 34719681 -147695561 - AluSx SINE Alu -31 281 1 2110 77 19 0 chr6 34719686 34719947 -147695295 - AluSp SINE Alu -14 299 34 389 234 311 22 chr6 34719958 34720180 -147695062 - L2 LINE L2 -609 2705 2420 355 238 234 13 chr6 34720181 34720408 -147694834 - L2 LINE L2 -1042 2272 1996 258 266 73 16 chr6 34720578 34720702 -147694540 + MIR SINE MIR 131 261 -1 1695 189 7 7 chr6 34722338 34722640 -147692602 - AluJo SINE Alu -10 302 1 438 211 114 63 chr6 34725748 34725923 -147689319 + MIR3 SINE MIR 7 190 -18 1598 115 0 100 chr6 34726157 34726436 -147688806 + AluSx SINE Alu 1 251 -61 365 310 65 32 chr6 34727682 34727898 -147687344 + MIR SINE MIR 40 262 0 2264 73 7 0 chr6 34728113 34728385 -147686857 + AluSq SINE Alu 1 274 -39 2538 72 0 7 chr6 34728493 34728799 -147686443 - AluY SINE Alu -7 304 1 327 257 152 86 chr6 34729515 34729772 -147685470 + L2 LINE L2 2175 2448 -866 402 325 103 34 chr6 34730270 34730648 -147684594 + L2 LINE L2 2458 2861 -453 1407 101 0 11 chr6 34731071 34731259 -147683983 + AluSg/x SINE Alu 101 286 -26 300 186 0 0 chr6 34731259 34731318 -147683924 + (TA)n Simple_repeat Simple_repeat 1 59 0 1642 163 7 24 chr6 34731354 34731642 -147683600 - AluJb SINE Alu -14 298 16 2417 47 0 20 chr6 34732399 34732696 -147682546 + AluY SINE Alu 1 291 -20 1666 75 133 61 chr6 34732708 34732986 -147682256 + AluSx SINE Alu 1 298 -14 1445 92 0 5 chr6 34733060 34733282 -147681960 - AluSq SINE Alu 0 327 107 321 26 0 0 chr6 34733287 34733325 -147681917 + (TA)n Simple_repeat Simple_repeat 1 38 0 3710 128 28 0 chr6 34733325 34733896 -147681346 - Harlequin LTR ERV1 -424 6472 5886 * 14787 81 13 3 chr6 34733890 34735907 -147679335 - Harlequin LTR ERV1 -1509 5387 3352 6627 41 39 9 chr6 34735906 34736880 -147678362 - Harlequin LTR ERV1 -4322 2574 1572 * 6224 70 37 16 chr6 34736865 34737749 -147677493 - Harlequin LTR ERV1 -5993 903 1 * 3764 52 23 0 chr6 34737749 34738228 -147677014 - LTR2B LTR ERV1 0 490 1 450 207 0 5 chr6 34738246 34738353 -147676889 + L1PA15 LINE L1 6025 6129 -36 2357 113 0 0 chr6 34738363 34738672 -147676570 + AluSx SINE Alu 1 309 -3 2221 86 31 7 chr6 34738870 34739162 -147676080 - AluSx SINE Alu -13 299 1 530 167 0 0 chr6 34739166 34739268 -147675974 - L1PA15 LINE L1 -13 6152 6051 2450 71 0 3 chr6 34739536 34739830 -147675412 - AluY SINE Alu -16 295 3 2155 123 3 26 chr6 34739843 34740152 -147675090 - AluY SINE Alu -9 302 1 1078 109 0 27 chr6 34740152 34740288 -147674954 - AluSq/x SINE Alu -179 134 1 2231 109 3 0 chr6 34740309 34740602 -147674640 - AluSp SINE Alu -19 294 1 77 17 0 26 chr6 34740604 34740672 -147674570 + AT_rich Low_complexity Low_complexity 1 69 -45 1218 78 6 0 chr6 34740672 34740839 -147674403 - L1PA8 LINE L1 -11 6161 5994 1907 144 35 3 chr6 34740841 34741125 -147674117 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 34741125 34741170 -147674072 + AT_rich Low_complexity Low_complexity 70 114 0 926 231 125 3 chr6 34741170 34741351 -147673891 - L1ME2 LINE L1 -2 6162 6004 2276 118 3 0 chr6 34741351 34741657 -147673585 - AluSx SINE Alu -5 307 1 926 231 125 3 chr6 34741657 34741786 -147673456 - L1ME2 LINE L1 -160 6004 5814 1183 124 26 26 chr6 34741795 34741988 -147673254 - AluSc SINE Alu -15 294 102 913 103 0 0 chr6 34741988 34742114 -147673128 + AluSp/q SINE Alu 166 291 -22 541 257 158 0 chr6 34742114 34742266 -147672976 + FRAM SINE Alu 1 40 0 2044 116 14 3 chr6 34742362 34742654 -147672588 - AluSx SINE Alu -14 298 4 2363 90 0 7 chr6 34742699 34742999 -147672243 - AluSg SINE Alu -12 298 1 2571 61 0 0 chr6 34743173 34743470 -147671772 + AluY SINE Alu 1 297 -14 1877 149 20 23 chr6 34743493 34743794 -147671448 - AluSx SINE Alu -12 300 1 2056 129 27 0 chr6 34743816 34744110 -147671132 - AluSq SINE Alu -11 302 1 2118 127 3 10 chr6 34744267 34744574 -147670668 - AluSx SINE Alu -7 305 1 1014 159 0 6 chr6 34744574 34744737 -147670505 - AluSg/x SINE Alu -6 304 143 510 169 8 85 chr6 34745188 34745263 -147669979 + MER5A DNA MER1_type 1 65 -124 2379 82 0 3 chr6 34745263 34745579 -147669663 + AluSq SINE Alu 1 313 0 510 169 8 85 chr6 34745579 34745621 -147669621 + MER5A DNA MER1_type 65 109 -80 386 338 43 53 chr6 34745868 34746149 -147669093 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 34746658 34746696 -147668546 + AT_rich Low_complexity Low_complexity 1 38 0 3899 138 17 124 chr6 34746732 34748276 -147666966 + pTR5 LTR ERV1 744 2606 0 649 119 10 0 chr6 34748317 34748418 -147666824 - FRAM SINE Alu -34 142 41 2193 92 17 0 chr6 34748680 34748973 -147666269 - AluSx SINE Alu -14 298 1 2211 107 7 7 chr6 34749877 34750187 -147665055 - AluSx SINE Alu -2 310 1 1820 151 10 16 chr6 34750219 34750523 -147664719 + AluJb SINE Alu 1 302 -10 216 97 0 0 chr6 34750525 34750556 -147664686 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2221 107 4 0 chr6 34750646 34750927 -147664315 + AluSq SINE Alu 14 295 -18 1179 224 28 50 chr6 34751633 34751955 -147663287 + MLT1A2 LTR MaLR 56 370 -4 423 192 98 62 chr6 34752033 34752226 -147663016 - L2 LINE L2 0 3313 3114 2214 108 0 0 chr6 34752243 34752520 -147662722 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 34752529 34752553 -147662689 + (TA)n Simple_repeat Simple_repeat 2 25 0 1049 259 108 9 chr6 34752557 34753028 -147662214 - MLT1G1 LTR MaLR -57 498 15 344 265 70 32 chr6 34753035 34753073 -147662169 - L2 LINE L2 -163 3150 3115 2402 103 0 3 chr6 34753073 34753383 -147661859 + AluSc SINE Alu 1 309 0 344 265 70 32 chr6 34753383 34753529 -147661713 - L2 LINE L2 -198 3115 2959 3684 130 18 12 chr6 34754900 34755498 -147659744 + LTR43 LTR ERV1 1 602 0 42117 1 0 8 chr6 34755498 34755840 -147659402 + LTR43-int LTR ERV1 1 344 -4454 2377 99 0 3 chr6 34755840 34756143 -147659099 - AluSg SINE Alu -7 303 2 42117 1 0 8 chr6 34756143 34756784 -147658458 + LTR43-int LTR ERV1 344 989 -3809 2292 94 7 0 chr6 34756784 34757070 -147658172 + AluSp SINE Alu 5 292 -21 42117 1 0 8 chr6 34757070 34757685 -147657557 + LTR43-int LTR ERV1 989 1608 -3190 2282 110 0 7 chr6 34757685 34757985 -147657257 - AluSx SINE Alu -14 298 1 42117 1 0 8 chr6 34757985 34758272 -147656970 + LTR43-int LTR ERV1 1608 1896 -2902 2506 85 0 0 chr6 34758272 34758578 -147656664 + AluSg SINE Alu 5 310 0 42117 1 0 8 chr6 34758578 34758720 -147656522 + LTR43-int LTR ERV1 1896 2038 -2760 2420 80 0 0 chr6 34758720 34759009 -147656233 + AluSg SINE Alu 1 289 -21 42117 1 0 8 chr6 34759009 34759074 -147656168 + LTR43-int LTR ERV1 2038 2102 -2696 2140 108 4 0 chr6 34759074 34759351 -147655891 + AluSx SINE Alu 34 311 -1 42117 1 0 8 chr6 34759351 34761188 -147654054 + LTR43-int LTR ERV1 2102 3953 -845 2450 89 7 0 chr6 34761188 34761490 -147653752 + AluSc SINE Alu 1 304 -5 42117 1 0 8 chr6 34761490 34762114 -147653128 + LTR43-int LTR ERV1 3953 4519 -279 1467 110 9 37 chr6 34762114 34762332 -147652910 + AluSg/x SINE Alu 83 294 -16 42117 1 0 8 chr6 34762332 34762610 -147652632 + LTR43-int LTR ERV1 4519 4798 0 4068 102 3 26 chr6 34762610 34763226 -147652016 + LTR43 LTR ERV1 1 602 0 764 163 20 14 chr6 34763255 34763402 -147651840 + L1MC3 LINE L1 6698 6845 -940 1703 90 0 5 chr6 34763402 34763613 -147651629 + AluSg SINE Alu 3 212 -98 887 188 39 51 chr6 34763620 34763749 -147651493 + L1M4 LINE L1 4531 4657 -1489 2510 69 26 0 chr6 34763749 34764053 -147651189 + AluSq SINE Alu 1 312 -1 887 188 39 51 chr6 34764053 34764179 -147651063 + L1M4 LINE L1 4657 4783 -1363 * 3072 141 65 95 chr6 34764169 34764331 -147650911 + L1MA8 LINE L1 5552 5717 -574 561 250 8 0 chr6 34764331 34764463 -147650779 - FLAM_A SINE Alu 0 133 1 3072 141 65 95 chr6 34764463 34764802 -147650440 + L1MA8 LINE L1 5717 6065 -226 2185 98 9 35 chr6 34764802 34765118 -147650124 + AluSx SINE Alu 1 308 -4 1808 139 41 8 chr6 34765123 34765390 -147649852 - AluSx SINE Alu -36 276 1 3072 141 65 95 chr6 34765390 34765641 -147649601 + L1MA8 LINE L1 6069 6288 -3 785 157 79 6 chr6 34765653 34765831 -147649411 + L1M4 LINE L1 4762 4952 -1194 861 231 43 22 chr6 34766248 34766554 -147648688 - MSTD LTR MaLR -8 388 16 4144 87 2 0 chr6 34766554 34767107 -147648135 + MER41A LTR ERV1 1 554 0 2203 100 30 3 chr6 34767133 34767432 -147647810 - AluSp SINE Alu -6 307 1 2504 124 136 69 chr6 34767732 34768239 -147647003 + LTR10B LTR ERV1 1 541 -6 2175 129 0 3 chr6 34768265 34768576 -147646666 - AluSg SINE Alu 0 310 1 2034 91 94 0 chr6 34768578 34768854 -147646388 - AluSq SINE Alu -11 302 1 1372 183 88 111 chr6 34768891 34769367 -147645875 - MER4C LTR ERV1 0 465 1 925 229 10 0 chr6 34769371 34769572 -147645670 - MER4C-int LTR ERV1 -1 6597 6395 262 246 33 57 chr6 34769601 34769723 -147645519 - MER4C-int LTR ERV1 -170 6428 6310 394 228 150 0 chr6 34769727 34769854 -147645388 - MER4C LTR ERV1 -205 260 158 5693 116 45 42 chr6 34769904 34770292 -147644950 - LTR49-int LTR ERV1 -520 5811 5426 2174 102 7 3 chr6 34770292 34770586 -147644656 - AluSp SINE Alu -18 295 1 5693 116 45 42 chr6 34770586 34771042 -147644200 - LTR49-int LTR ERV1 -905 5426 4961 2332 102 0 0 chr6 34771042 34771345 -147643897 + AluSg SINE Alu 1 303 -7 5693 116 45 42 chr6 34771345 34771536 -147643706 - LTR49-int LTR ERV1 -1370 4961 4772 2107 104 7 7 chr6 34771537 34771844 -147643398 + AluSg SINE Alu 1 307 0 838 184 18 64 chr6 34771846 34772064 -147643178 - LTR49-int LTR ERV1 -1969 2911 2704 1824 110 4 4 chr6 34772072 34772318 -147642924 - AluSc SINE Alu -63 246 1 1080 215 85 97 chr6 34772318 34772878 -147642364 - LTR49-int LTR ERV1 -2614 2266 1700 2485 93 0 0 chr6 34772878 34773188 -147642054 + AluSg SINE Alu 1 310 0 1080 215 85 97 chr6 34773188 34773477 -147641765 - LTR49-int LTR ERV1 -3180 1700 1001 2295 74 25 3 chr6 34773555 34773839 -147641403 - AluSc SINE Alu -19 290 1 620 148 87 54 chr6 34773851 34774000 -147641242 - LTR49-int LTR ERV1 -5184 1147 994 258 156 22 0 chr6 34774017 34774062 -147641180 - LTR49 LTR ERV1 -287 308 263 3348 78 41 0 chr6 34774680 34775115 -147640127 + MLT2A2 LTR ERVL 1 453 0 2227 104 3 0 chr6 34775302 34775600 -147639642 - AluSp SINE Alu -14 299 1 289 348 0 0 chr6 34776463 34776552 -147638690 - MER82 DNA MER2_type -61 592 504 2409 74 14 0 chr6 34776893 34777189 -147638053 - AluY SINE Alu -11 300 1 8673 219 48 25 chr6 34777189 34778036 -147637206 - HERV3 LTR ERV1 -1084 7342 6516 2592 40 0 13 chr6 34778036 34778338 -147636904 - AluY SINE Alu -13 298 1 8673 219 48 25 chr6 34778338 34779318 -147635924 - HERV3 LTR ERV1 -1910 6516 5469 1143 178 12 89 chr6 34779319 34779440 -147635802 - LTR61 LTR ERV1 -329 266 174 2348 90 0 0 chr6 34779440 34779729 -147635513 + AluY SINE Alu 1 289 -22 1143 178 12 89 chr6 34779729 34779865 -147635377 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 34779865 34779889 -147635353 + (TTA)n Simple_repeat Simple_repeat 1 24 0 957 311 44 21 chr6 34780020 34780454 -147634788 + LTR33 LTR ERVL 10 453 -68 2291 92 7 0 chr6 34780457 34780751 -147634491 + AluSp SINE Alu 1 296 -17 225 91 0 0 chr6 34780752 34780785 -147634457 + LTR33 LTR ERVL 485 517 -4 2241 99 17 3 chr6 34781478 34781780 -147633462 - AluSq SINE Alu -7 306 1 553 130 98 0 chr6 34782173 34782296 -147632946 + L1MB7 LINE L1 6037 6171 -13 537 267 144 25 chr6 34782309 34782750 -147632492 + L1ME3A LINE L1 5434 5937 -233 561 234 22 54 chr6 34783217 34783401 -147631841 + MER3 DNA MER1_type 4 181 -28 694 132 9 9 chr6 34783418 34783532 -147631710 - MER9 LTR ERVK 0 511 398 3674 96 8 6 chr6 34783534 34784047 -147631195 - HERVK9 LTR ERVK -821 5095 4582 1842 70 4 0 chr6 34784046 34784276 -147630966 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 78 4 9 chr6 34784277 34787022 -147628220 - HERVK9 LTR ERVK -3131 2785 1 3674 113 0 6 chr6 34787022 34787536 -147627706 - MER9 LTR ERVK 0 511 1 1736 104 0 0 chr6 34787845 34788126 -147627116 - AluSg/x SINE Alu 0 346 66 2235 98 34 0 chr6 34788352 34788649 -147626593 + AluSx SINE Alu 1 307 -5 952 161 6 12 chr6 34788711 34788872 -147626370 - FRAM SINE Alu -17 159 1 23 0 0 0 chr6 34789202 34789225 -147626017 + AT_rich Low_complexity Low_complexity 1 23 0 2092 137 7 7 chr6 34790960 34791290 -147623952 + AluSx SINE Alu 1 312 0 2018 144 0 7 chr6 34791576 34791874 -147623368 - AluSq SINE Alu -17 296 1 2243 154 21 5 chr6 34792287 34792671 -147622571 - MLT1B LTR MaLR 0 390 1 648 70 0 0 chr6 34792696 34792782 -147622460 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2280 120 0 0 chr6 34792794 34793102 -147622140 - AluSx SINE Alu -4 308 1 597 286 40 0 chr6 34794142 34794317 -147620925 + MLT1G1 LTR MaLR 11 192 -403 1681 186 73 13 chr6 34794442 34794921 -147620321 - L1M4 LINE L1 -3828 3020 2513 1373 243 48 6 chr6 34794927 34795260 -147619982 - MLT2C2 LTR ERVL -116 348 2 3755 211 19 34 chr6 34795263 34795695 -147619547 - ERVL-C2 LTR ERVL -7 5757 5342 1572 190 11 18 chr6 34795695 34796013 -147619229 - AluJb SINE Alu 0 316 1 3755 211 19 34 chr6 34796013 34796460 -147618782 - ERVL-C2 LTR ERVL -422 5342 4890 16052 203 23 20 chr6 34796462 34800234 -147615008 + L1PA12 LINE L1 1328 5902 -1682 684 265 132 0 chr6 34800233 34800422 -147614820 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 34800614 34800707 -147614535 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 34800720 34800919 -147614323 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 34801078 34801341 -147613901 + MLT2D LTR ERVL 1 264 -150 1423 224 6 54 chr6 34801343 34801692 -147613550 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 34801692 34801829 -147613413 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 34801832 34801907 -147613335 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 34801913 34802042 -147613200 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 34802042 34802373 -147612869 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 34802373 34803148 -147612094 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 34803148 34803400 -147611842 + MER21B-int LTR ERV1 3062 3312 -879 2493 200 39 16 chr6 34803499 34804063 -147611179 + MER21B-int LTR ERV1 3463 4039 -152 41356 71 5 7 chr6 34804078 34804452 -147610790 - L1PA6 LINE L1 -4 6150 5777 2372 92 3 3 chr6 34804452 34804758 -147610484 - AluY SINE Alu -5 306 1 41356 71 5 7 chr6 34804758 34810534 -147604708 - L1PA6 LINE L1 -377 5777 11 1566 217 3 3 chr6 34810637 34810932 -147604310 + AluJo SINE Alu 1 295 -17 1802 247 4 43 chr6 34810990 34811455 -147603787 + MER21B LTR ERV1 19 465 -398 598 273 132 41 chr6 34811456 34811775 -147603467 + MSTD LTR MaLR 1 348 -17 1876 149 8 62 chr6 34811786 34812142 -147603100 + MER1B DNA MER1_type 1 337 0 1526 173 17 88 chr6 34812178 34812769 -147602473 + MER4A LTR ERV1 1 465 0 914 249 51 33 chr6 34812782 34813055 -147602187 + MER21B LTR ERV1 505 782 -81 4804 55 12 14 chr6 34813086 34814121 -147601121 - MER11A LTR ERVK 0 1266 1 23 0 0 0 chr6 34814367 34814390 -147600852 + AT_rich Low_complexity Low_complexity 1 23 0 3202 128 20 49 chr6 34814748 34815378 -147599864 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 34815502 34815592 -147599650 - LTR19C LTR ERV1 0 779 686 1647 110 10 93 chr6 34815593 34815894 -147599348 - LTR9 LTR ERV1 -336 276 1 451 289 21 84 chr6 34815899 34816186 -147599056 + LTR67 LTR ERVL 185 453 -104 242 287 64 11 chr6 34816675 34816769 -147598473 + MER5A DNA MER1_type 4 102 -87 1664 252 111 26 chr6 34816872 34817927 -147597315 + L2 LINE L2 2107 3252 -61 949 318 46 17 chr6 34823377 34823968 -147591274 - L1MEc LINE L1 -4155 2241 1634 244 271 31 21 chr6 34824158 34824254 -147590988 + C-rich Low_complexity Low_complexity 4 100 0 1982 238 60 41 chr6 34824278 34824942 -147590300 - L1ME1 LINE L1 -112 6054 5378 268 297 31 31 chr6 34824963 34825091 -147590151 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 34825099 34825239 -147590003 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 34825306 34825435 -147589807 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 34826697 34826863 -147588379 + A-rich Low_complexity Low_complexity 1 158 0 5261 93 21 3 chr6 34829286 34830014 -147585228 + L1PA8A LINE L1 5388 6128 -3 872 87 10 1 chr6 34830022 34830151 -147585091 + L1PA13 LINE L1 5655 5790 -373 2852 72 0 41 chr6 34831440 34831855 -147583387 + L1PA13 LINE L1 5766 6163 0 930 278 53 60 chr6 34832056 34832320 -147582922 + L1MEc LINE L1 1516 1776 -4620 2432 18 0 18 chr6 34832320 34832602 -147582640 + AluY SINE Alu 35 311 0 930 278 53 60 chr6 34832602 34832866 -147582376 + L1MEc LINE L1 1776 2040 -4356 342 92 46 15 chr6 34832879 34832944 -147582298 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 34832944 34832979 -147582263 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 34833268 34833561 -147581681 + AluJo SINE Alu 1 289 -23 1834 54 13 5 chr6 34833865 34834089 -147581153 - AluY SINE Alu -85 226 1 974 208 34 78 chr6 34834864 34835249 -147579993 - L1MC5 LINE L1 -509 7452 7085 697 271 174 12 chr6 34835294 34835622 -147579620 + L1ME3A LINE L1 5615 5995 -175 431 284 50 58 chr6 34839331 34839708 -147575534 - L1ME LINE L1 -4863 1679 1306 308 343 17 42 chr6 34839694 34839930 -147575312 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 34840339 34840419 -147574823 - L1ME LINE L1 -5937 697 613 1817 170 0 7 chr6 34840584 34840878 -147574364 + AluJb SINE Alu 1 292 -20 423 0 0 0 chr6 34841513 34841560 -147573682 + (TG)n Simple_repeat Simple_repeat 1 47 0 593 288 82 29 chr6 34841624 34841949 -147573293 + ERVL LTR ERVL 3330 3633 -2021 480 318 34 17 chr6 34841989 34842222 -147573020 + ERVL LTR ERVL 3739 3975 -1789 420 299 112 74 chr6 34842579 34843215 -147572027 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 34843909 34844179 -147571063 + MIR SINE MIR 11 262 0 618 219 40 61 chr6 34845603 34845881 -147569361 + L1MB8 LINE L1 4140 4411 -1735 3237 207 61 24 chr6 34845883 34847197 -147568045 + L1MB8 LINE L1 4806 6162 -16 2748 199 8 4 chr6 34848063 34848561 -147566681 + MLT1D LTR MaLR 1 500 -5 322 273 11 23 chr6 34848855 34848943 -147566299 - MLT2E LTR ERVL -510 118 32 4207 72 2 2 chr6 34849218 34849757 -147565485 - L1PA8 LINE L1 -5 6167 5629 1245 363 63 25 chr6 34850924 34852121 -147563121 + ERVL LTR ERVL 3827 5068 -696 37 52 0 0 chr6 34852292 34852350 -147562892 + AT_rich Low_complexity Low_complexity 1 58 0 4622 100 11 37 chr6 34852374 34853058 -147562184 - L1PB2 LINE L1 -9 6142 5477 2201 123 3 0 chr6 34853058 34853366 -147561876 - AluY SINE Alu -2 309 1 4622 100 11 37 chr6 34853366 34853410 -147561832 - L1PB2 LINE L1 -674 5477 5433 255 218 36 0 chr6 34853417 34853472 -147561770 - L2 LINE L2 -3 3310 3254 235 395 46 0 chr6 34853625 34853949 -147561293 - L2 LINE L2 -340 2974 2636 1433 260 136 6 chr6 34854920 34855404 -147559838 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 34856081 34856285 -147558957 + MIR SINE MIR 3 229 -33 208 159 0 58 chr6 34856501 34856570 -147558672 + (CATA)n Simple_repeat Simple_repeat 4 68 0 2801 26 0 0 chr6 34857150 34857456 -147557786 + AluY SINE Alu 1 306 -5 354 91 0 0 chr6 34857813 34857868 -147557374 + (GGA)n Simple_repeat Simple_repeat 1 55 0 291 322 173 0 chr6 34859665 34859873 -147555369 + MIR SINE MIR 8 251 -11 324 48 0 0 chr6 34861081 34861123 -147554119 + (TA)n Simple_repeat Simple_repeat 2 43 0 2123 41 0 16 chr6 34861123 34861369 -147553873 - AluY SINE Alu -13 298 57 302 327 28 53 chr6 34861477 34861911 -147553331 + L1M4 LINE L1 4405 4827 -1319 280 298 133 26 chr6 34862191 34862342 -147552900 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 34862739 34862779 -147552463 + MER5A DNA MER1_type 150 189 0 442 288 17 28 chr6 34862790 34862967 -147552275 - MER5B DNA MER1_type -3 175 1 343 260 54 39 chr6 34863130 34863334 -147551908 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 34863337 34863401 -147551841 + L1ME3 LINE L1 4093 4157 -1989 266 272 151 20 chr6 34863407 34863712 -147551530 + L1ME3 LINE L1 4259 4603 -1543 513 161 97 0 chr6 34863855 34863979 -147551263 + L1MB7 LINE L1 6036 6171 -13 627 309 88 25 chr6 34863987 34864466 -147550776 + L1ME3 LINE L1 5429 5937 -225 624 224 12 53 chr6 34864945 34865115 -147550127 + MER3 DNA MER1_type 19 181 -28 403 263 8 17 chr6 34865814 34865932 -147549310 - MIR SINE MIR -18 244 128 889 128 8 8 chr6 34866290 34866423 -147548819 - FRAM SINE Alu -44 132 1 2455 136 21 0 chr6 34868067 34868449 -147546793 - MLT1B LTR MaLR 0 390 1 579 236 50 50 chr6 34869491 34869673 -147545569 + MLT1G1 LTR MaLR 11 192 -403 1383 173 108 61 chr6 34869798 34869880 -147545362 - L1M4 LINE L1 -3828 2554 2477 2119 113 0 10 chr6 34869880 34870173 -147545069 - AluSg SINE Alu -20 290 1 1383 173 108 61 chr6 34870173 34870581 -147544661 - L1M4 LINE L1 -3905 2477 2043 1283 256 8 4 chr6 34870583 34870921 -147544321 - MLT2C1 LTR ERVL -99 298 1 3173 207 55 51 chr6 34870928 34871325 -147543917 - ERVL-C1 LTR ERVL -16 5748 5354 1583 183 11 18 chr6 34871325 34871651 -147543591 - AluJb SINE Alu 0 324 1 3173 207 55 51 chr6 34871651 34872082 -147543160 - ERVL-C1 LTR ERVL -410 5354 4915 1799 150 7 18 chr6 34872082 34872362 -147542880 + L1PA13 LINE L1 1309 1585 -5996 21188 168 15 21 chr6 34872371 34874417 -147540825 + L1PA13 LINE L1 2544 4601 -3000 2228 120 0 9 chr6 34874417 34874733 -147540509 - AluSp SINE Alu 0 313 1 21188 168 15 21 chr6 34874733 34876161 -147539081 + L1PA13 LINE L1 4601 6036 -1565 2536 63 0 0 chr6 34876161 34876461 -147538781 - AluY SINE Alu -11 300 1 21188 168 15 21 chr6 34876461 34876590 -147538652 + L1PA13 LINE L1 6036 6164 -1437 2060 123 3 10 chr6 34876590 34876883 -147538359 - AluSg SINE Alu -19 291 1 21188 168 15 21 chr6 34876883 34878281 -147536961 + L1PA13 LINE L1 6164 7601 0 553 208 19 0 chr6 34878284 34878390 -147536852 - ERVL LTR ERVL -3552 2212 2105 828 177 11 22 chr6 34878411 34878592 -147536650 - L1 LINE L1 -2688 4160 3982 1937 202 51 82 chr6 34878602 34879212 -147536030 - LTR10E LTR ERV1 -42 591 1 22848 261 44 36 chr6 34879215 34879798 -147535444 - HERVI LTR ERV1 -1 7784 7207 2186 87 47 0 chr6 34879798 34880075 -147535167 - AluSg SINE Alu -20 290 1 22848 261 44 36 chr6 34880075 34887080 -147528162 - HERVI LTR ERV1 -578 7207 26 2026 175 49 103 chr6 34887121 34887734 -147527508 - LTR10E LTR ERV1 -42 591 12 8360 214 35 21 chr6 34887744 34888892 -147526350 - L1 LINE L1 -2873 3975 2845 3763 102 2 4 chr6 34888892 34889404 -147525838 - MER9 LTR ERVK 0 511 1 8360 214 35 21 chr6 34889404 34889850 -147525392 - L1 LINE L1 -4003 2845 2407 2215 116 0 28 chr6 34889850 34890168 -147525074 + AluSc SINE Alu 1 309 0 8360 214 35 21 chr6 34890168 34891592 -147523650 - L1 LINE L1 -4441 2407 913 2035 131 3 3 chr6 34891725 34892042 -147523200 - AluSg SINE Alu 0 317 1 345 186 44 62 chr6 34892060 34892173 -147523069 + L1MA7 LINE L1 6178 6288 -3 237 295 27 9 chr6 34892199 34892311 -147522931 - L1M4c LINE L1 -4752 1632 1519 7441 48 2 0 chr6 34892566 34893698 -147521544 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 34893698 34893950 -147521292 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 34893951 34894301 -147520941 + MER21B-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 34894301 34894448 -147520794 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 34894448 34894521 -147520721 + MER21B-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 34894527 34894670 -147520572 + FRAM SINE Alu 16 167 -9 1906 261 37 37 chr6 34894680 34894992 -147520250 + MER21B-int LTR ERV1 2742 3056 -1135 4449 169 18 17 chr6 34894992 34895774 -147519468 - LTR39 LTR ERV1 0 783 1 1906 261 37 37 chr6 34895774 34896033 -147519209 + MER21B-int LTR ERV1 3055 3313 -878 2633 188 41 18 chr6 34896131 34896696 -147518546 + MER21B-int LTR ERV1 3463 4040 -151 1592 215 3 0 chr6 34896793 34897091 -147518151 + AluJo SINE Alu 1 299 -13 1734 223 21 62 chr6 34897148 34897614 -147517628 + MER21B LTR ERV1 19 465 -398 635 239 83 30 chr6 34897615 34897933 -147517309 + MSTD LTR MaLR 1 348 -17 2118 123 6 54 chr6 34897944 34898294 -147516948 + MER1B DNA MER1_type 1 333 -6 1421 189 25 83 chr6 34898329 34898912 -147516330 + MER4A LTR ERV1 1 465 0 836 261 52 29 chr6 34898925 34899197 -147516045 + MER21B LTR ERV1 505 782 -81 3097 146 19 54 chr6 34899865 34900460 -147514782 - MER4B LTR ERV1 -36 574 1 626 268 50 81 chr6 34900489 34900587 -147514655 + LTR67 LTR ERVL 82 182 -375 2932 151 43 61 chr6 34900587 34901210 -147514032 - LTR9 LTR ERV1 0 612 1 626 268 50 81 chr6 34901210 34901495 -147513747 + LTR67 LTR ERVL 182 453 -104 204 311 80 26 chr6 34901825 34901976 -147513266 + MER5B DNA MER1_type 1 159 -19 258 273 68 0 chr6 34902003 34902091 -147513151 + MER5A DNA MER1_type 9 102 -87 1938 253 89 24 chr6 34902199 34903330 -147511912 + L2 LINE L2 2108 3311 -2 21 82 0 0 chr6 34906601 34906650 -147508592 + GC_rich Low_complexity Low_complexity 1 49 0 203 318 19 9 chr6 34908450 34908557 -147506685 + CT-rich Low_complexity Low_complexity 5 112 0 900 307 66 17 chr6 34908667 34909246 -147505996 - L1MEc LINE L1 -4155 2241 1635 22 0 0 0 chr6 34909258 34909280 -147505962 + AT_rich Low_complexity Low_complexity 1 22 0 234 235 25 12 chr6 34909441 34909522 -147505720 + CT-rich Low_complexity Low_complexity 5 86 0 1700 266 59 38 chr6 34909560 34910223 -147505019 - L1ME1 LINE L1 -112 6448 5772 254 275 70 28 chr6 34910244 34910386 -147504856 - L1ME1 LINE L1 -1843 4697 4550 747 171 49 0 chr6 34910394 34910517 -147504725 - FLAM_C SINE Alu -4 129 1 5849 95 32 3 chr6 34910613 34911463 -147503779 + L1PA8A LINE L1 5267 6163 0 3551 70 0 34 chr6 34911478 34911976 -147503266 + L1PA13 LINE L1 5683 6163 0 337 241 47 35 chr6 34911983 34912154 -147503088 - L1ME1 LINE L1 -3898 2642 2471 929 299 52 35 chr6 34912167 34912689 -147502553 + L1MEc LINE L1 1515 2045 -4351 341 206 0 0 chr6 34912698 34912766 -147502476 + L1P LINE L1 3148 3215 -2931 1317 223 7 34 chr6 34913053 34913364 -147501878 + AluJo SINE Alu 1 303 0 21 0 0 0 chr6 34913391 34913412 -147501830 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr6 34913583 34913611 -147501631 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 445 241 160 37 chr6 34913646 34913833 -147501409 - HAL1 LINE L1 -2 2505 2296 686 244 185 15 chr6 34913847 34914236 -147501006 - HAL1 LINE L1 -17 2490 2036 572 221 8 8 chr6 34914334 34914456 -147500786 - FLAM_A SINE Alu -11 122 1 951 225 49 4 chr6 34914511 34914755 -147500487 - HAL1 LINE L1 -723 1784 1530 1640 163 53 25 chr6 34914758 34915041 -147500201 - AluJb SINE Alu -21 291 1 359 250 164 0 chr6 34915121 34915249 -147499993 + L2 LINE L2 2499 2647 -667 2009 112 14 3 chr6 34915333 34915619 -147499623 + AluSq SINE Alu 11 299 -14 372 346 58 0 chr6 34916010 34916198 -147499044 - L1ME LINE L1 -398 5772 5574 837 234 39 61 chr6 34918031 34918441 -147496801 - L1MC5 LINE L1 -476 7485 7085 429 255 135 37 chr6 34918468 34918972 -147496270 + L1ME3A LINE L1 5596 6161 -9 813 257 101 22 chr6 34919258 34919624 -147495618 + ERVL LTR ERVL 3880 4274 -1490 4341 198 16 22 chr6 34919771 34920285 -147494957 + L1P LINE L1 3469 3985 -2161 812 112 0 0 chr6 34920285 34920392 -147494850 + U6 snRNA snRNA 1 107 0 4341 198 16 22 chr6 34920392 34921093 -147494149 + L1P LINE L1 3985 4657 -1489 29 0 0 0 chr6 34921109 34921138 -147494104 + AT_rich Low_complexity Low_complexity 1 29 0 1279 138 17 20 chr6 34921853 34922157 -147493085 + L1MB5 LINE L1 4625 4938 -1208 * 3359 243 40 24 chr6 34922139 34923275 -147491967 + L1M4c LINE L1 742 1895 -4489 2198 181 19 19 chr6 34923275 34923707 -147491535 + L1MB5 LINE L1 5743 6174 0 7663 67 35 4 chr6 34923828 34924805 -147490437 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 34925421 34925467 -147489775 + (CATA)n Simple_repeat Simple_repeat 2 47 0 988 196 0 0 chr6 34925685 34925843 -147489399 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 34925873 34925908 -147489334 + AT_rich Low_complexity Low_complexity 1 35 0 495 299 111 53 chr6 34926063 34926477 -147488765 - L1ME4a LINE L1 -130 5991 5554 1659 282 17 8 chr6 34926479 34927268 -147487974 - ERVL-C1 LTR ERVL -4812 952 28 273 263 68 34 chr6 34927659 34927777 -147487465 + MER58B DNA MER1_type 220 341 0 500 162 40 30 chr6 34928346 34928445 -147486797 + MIR SINE MIR 40 139 -123 300 158 0 0 chr6 34929750 34929807 -147485435 + T-rich Low_complexity Low_complexity 1 57 0 33 43 0 0 chr6 34931165 34931212 -147484030 + AT_rich Low_complexity Low_complexity 1 47 0 1218 212 52 7 chr6 34931738 34931776 -147483466 - MLT2C1 LTR ERVL -2 395 360 288 0 0 0 chr6 34931776 34931808 -147483434 + (TG)n Simple_repeat Simple_repeat 2 33 0 1218 212 52 7 chr6 34931808 34932038 -147483204 - MLT2C1 LTR ERVL -37 360 115 2119 221 69 26 chr6 34932955 34933534 -147481708 - MLT1E3 LTR MaLR 0 624 21 517 277 7 14 chr6 34933760 34933901 -147481341 - MLT1F1 LTR MaLR -8 559 420 * 539 331 33 3 chr6 34933896 34934201 -147481041 - LTR16B LTR ERVL -56 408 95 1143 323 52 35 chr6 34934241 34935274 -147479968 - HERVL LTR ERVL -433 5221 4171 1615 315 78 53 chr6 34935514 34936861 -147478381 - HERVL LTR ERVL -2238 3526 2146 940 321 39 5 chr6 34936899 34937313 -147477929 - HERVL LTR ERVL -2966 2030 1603 325 339 114 3 chr6 34937714 34938070 -147477172 - L1ME3A LINE L1 -211 5951 5552 463 253 207 6 chr6 34938108 34938282 -147476960 + L2 LINE L2 2042 2250 -1064 461 255 50 108 chr6 34938315 34938593 -147476649 + L1MC4a LINE L1 5513 5774 -2034 294 307 18 37 chr6 34938778 34938941 -147476301 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 34939103 34939134 -147476108 + AT_rich Low_complexity Low_complexity 1 31 0 585 170 38 0 chr6 34939888 34939994 -147475248 + MER5A DNA MER1_type 3 112 -77 681 45 0 0 chr6 34940036 34940125 -147475117 + (TC)n Simple_repeat Simple_repeat 2 90 0 4609 72 2 0 chr6 34940440 34941008 -147474234 - MER61E LTR ERV1 0 569 1 292 348 63 32 chr6 34941009 34941167 -147474075 + L2 LINE L2 3110 3272 0 2254 116 7 3 chr6 34942160 34942463 -147472779 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 34942478 34942506 -147472736 + AT_rich Low_complexity Low_complexity 1 28 0 299 251 30 90 chr6 34942912 34943016 -147472226 - L1ME LINE L1 -412 5709 5617 2387 99 0 0 chr6 34943016 34943310 -147471932 - AluSg SINE Alu -16 294 1 299 251 30 90 chr6 34943310 34943372 -147471870 - L1ME LINE L1 -504 5617 5553 2483 73 3 0 chr6 34943372 34943673 -147471569 + AluY SINE Alu 1 302 -9 567 290 135 34 chr6 34943696 34944426 -147470816 - L2 LINE L2 -3 3310 2514 1536 179 29 36 chr6 34945472 34945620 -147469622 + AluJo SINE Alu 1 148 -164 381 22 0 0 chr6 34945620 34945666 -147469576 + (CA)n Simple_repeat Simple_repeat 2 47 0 1536 179 29 36 chr6 34945666 34945825 -147469417 + AluJo SINE Alu 148 306 -6 2557 176 111 45 chr6 34946504 34947186 -147468056 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 34947767 34947791 -147467451 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 0 0 chr6 34947791 34947949 -147467293 - FRAM SINE Alu -8 168 11 2000 172 126 20 chr6 34947998 34948458 -147466784 + LTR22 LTR ERVK 1 509 0 1984 128 0 0 chr6 34948593 34948859 -147466383 - AluSq SINE Alu -47 266 1 407 324 0 0 chr6 34948973 34949109 -147466133 + L1ME1 LINE L1 6027 6162 -4 328 253 44 114 chr6 34949118 34949391 -147465851 + L1MC4 LINE L1 7762 8015 -27 2572 53 0 0 chr6 34949395 34949695 -147465547 + AluY SINE Alu 1 300 -11 2212 80 7 3 chr6 34950487 34950774 -147464468 + AluSp SINE Alu 1 288 -25 1072 149 6 6 chr6 34951649 34951810 -147463432 + FRAM SINE Alu 1 160 -16 616 200 50 61 chr6 34951864 34952044 -147463198 - MER5B DNA MER1_type 0 178 1 536 178 9 37 chr6 34952129 34952236 -147463006 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 34952246 34952286 -147462956 + (T)n Simple_repeat Simple_repeat 1 40 0 741 71 31 0 chr6 34952286 34952384 -147462858 - HY3 scRNA scRNA 0 101 1 9369 144 24 16 chr6 34955548 34957369 -147457873 - L1MA3 LINE L1 0 6305 4453 2298 116 3 0 chr6 34957369 34957670 -147457572 - AluSp SINE Alu -11 302 1 9369 144 24 16 chr6 34957670 34958581 -147456661 - L1MA3 LINE L1 -1852 4453 3551 2037 178 142 42 chr6 34958575 34958859 -147456383 - L1MB3 LINE L1 -4 6179 5925 * 2287 117 0 3 chr6 34958859 34959167 -147456075 + AluSq SINE Alu 5 311 -2 2037 178 142 42 chr6 34959167 34959442 -147455800 - L1MB3 LINE L1 -258 5925 5679 231 88 0 0 chr6 34959442 34959476 -147455766 + (TG)n Simple_repeat Simple_repeat 1 34 0 2037 178 142 42 chr6 34959476 34959633 -147455609 - L1MB3 LINE L1 -504 5679 5317 887 250 52 32 chr6 34959646 34959994 -147455248 - L1MB3 LINE L1 -893 5253 4899 213 39 0 0 chr6 34962497 34962523 -147452719 + (CTG)n Simple_repeat Simple_repeat 2 27 0 444 286 143 0 chr6 34965263 34965438 -147449804 + MIR SINE MIR 24 223 -39 22 0 0 0 chr6 34965472 34965494 -147449748 + AT_rich Low_complexity Low_complexity 1 22 0 2502 67 3 3 chr6 34965506 34965803 -147449439 + AluSc SINE Alu 1 297 -12 2046 139 0 0 chr6 34965804 34966084 -147449158 - AluSx SINE Alu -32 280 1 222 105 0 0 chr6 34966084 34966122 -147449120 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 34966140 34966175 -147449067 + AT_rich Low_complexity Low_complexity 1 35 0 521 292 106 20 chr6 34967292 34967737 -147447505 - HAL1 LINE L1 -5 2502 2020 2234 123 0 3 chr6 34967764 34968073 -147447169 - AluSc SINE Alu -1 308 1 2336 98 10 0 chr6 34968073 34968369 -147446873 - AluSp SINE Alu -14 299 1 293 231 77 34 chr6 34968410 34968527 -147446715 - HAL1 LINE L1 -586 1921 1800 211 280 67 0 chr6 34968576 34968651 -147446591 - MER5A DNA MER1_type -85 104 25 719 209 0 16 chr6 34968679 34968808 -147446434 - AluJb SINE Alu -30 282 156 1636 203 27 78 chr6 34968873 34968943 -147446299 - L1MB2 LINE L1 -1 6170 6098 718 211 0 0 chr6 34968943 34969076 -147446166 + FLAM_C SINE Alu 1 133 0 1636 203 27 78 chr6 34969076 34969527 -147445715 - L1MB2 LINE L1 -73 6098 5676 247 133 0 83 chr6 34969895 34969955 -147445287 + MLT2B3 LTR ERVL 458 546 -8 430 320 72 31 chr6 34969960 34970454 -147444788 - L2 LINE L2 -132 3181 2666 1536 230 27 29 chr6 34970463 34970907 -147444335 - L1MB2 LINE L1 -799 5347 4905 366 176 27 0 chr6 34971834 34971908 -147443334 - MER20 DNA MER1_type -138 81 6 244 291 120 34 chr6 34972260 34972676 -147442566 + L1MC5 LINE L1 7332 7783 -178 215 170 0 19 chr6 34972710 34972763 -147442479 + (CA)n Simple_repeat Simple_repeat 1 52 0 3698 166 23 9 chr6 34972766 34973558 -147441684 - HUERS-P3 LTR ERV1 -8018 901 17 3470 153 16 61 chr6 34973574 34974215 -147441027 - LTR9 LTR ERV1 0 612 1 1000 191 0 6 chr6 34974222 34974395 -147440847 - MER41D LTR ERV1 -336 221 50 2039 150 48 20 chr6 34974395 34974749 -147440493 - L1PB2 LINE L1 -19 6132 5769 419 164 0 0 chr6 34974749 34974819 -147440423 - L1MD2 LINE L1 0 6359 6287 795 174 0 8 chr6 34974819 34974951 -147440291 + AluJo SINE Alu 4 134 -178 1627 197 37 42 chr6 34974951 34975331 -147439911 - L1MD1 LINE L1 -57 6185 5808 4902 193 8 6 chr6 34975340 34976701 -147438541 - L1PA6 LINE L1 -1 6153 4792 1694 216 3 0 chr6 34976700 34977033 -147438209 - L1MB2 LINE L1 -1896 4250 3917 * 2696 96 34 10 chr6 34977052 34977438 -147437804 + MLT2A1 LTR ERVL 6 400 -44 229 55 110 0 chr6 34977438 34977511 -147437731 + (TA)n Simple_repeat Simple_repeat 1 81 0 44 56 0 0 chr6 34977516 34977588 -147437654 + AT_rich Low_complexity Low_complexity 1 72 0 627 81 78 1 chr6 34977617 34978448 -147436794 + (TA)n Simple_repeat Simple_repeat 1 894 0 370 104 22 55 chr6 34978422 34978605 -147436637 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 581 88 33 47 chr6 34978611 34979446 -147435796 + (TA)n Simple_repeat Simple_repeat 1 823 0 484 98 0 72 chr6 34979448 34979641 -147435601 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 587 96 65 5 chr6 34979643 34980033 -147435209 + (TA)n Simple_repeat Simple_repeat 1 413 0 616 90 66 0 chr6 34980074 34980241 -147435001 + (TA)n Simple_repeat Simple_repeat 1 178 0 371 73 18 0 chr6 34980241 34980296 -147434946 + MLT2A1 LTR ERVL 389 444 0 44044 74 10 13 chr6 34980296 34985967 -147429275 + HERVL-A1-A1 LTR ERVL 1 5654 0 3179 101 18 40 chr6 34985967 34986421 -147428821 + MLT2A1 LTR ERVL 1 444 0 7856 195 34 8 chr6 34986421 34988207 -147427035 - L1PBa LINE L1 -2234 4628 2793 2232 122 61 19 chr6 34988451 34988811 -147426431 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 34988811 34989485 -147425757 + THE1C-int LTR MaLR 1 656 -924 2394 79 3 0 chr6 34990969 34991260 -147423982 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 34991285 34991326 -147423916 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 34991327 34991398 -147423844 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 227 88 29 0 chr6 34992723 34992757 -147422485 + THE1C LTR MaLR 288 322 -53 212 175 18 53 chr6 34992757 34992814 -147422428 + GA-rich Low_complexity Low_complexity 1 55 0 342 45 0 0 chr6 34992844 34992888 -147422354 + (TG)n Simple_repeat Simple_repeat 2 45 0 5782 167 18 10 chr6 34993482 34993619 -147421623 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 34993619 34993650 -147421592 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5782 167 18 10 chr6 34993650 34994918 -147420324 - L1M1 LINE L1 -805 5498 4214 2560 168 43 111 chr6 34994921 34995589 -147419653 + MER21B LTR ERV1 218 840 -23 1490 177 3 66 chr6 34996143 34996476 -147418766 - AluJb SINE Alu 0 312 1 1820 181 0 3 chr6 34996677 34996981 -147418261 - AluJb SINE Alu -4 308 6 5984 138 71 58 chr6 34997089 34997435 -147417807 - Tigger3b DNA MER2_type -1797 1231 891 215 61 30 0 chr6 34997435 34997468 -147417774 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5984 138 71 58 chr6 34997468 34997660 -147417582 - Tigger3b DNA MER2_type -2137 891 703 8190 23 6 0 chr6 34997660 34998730 -147416512 - L1PA3 LINE L1 0 6155 5083 5984 138 71 58 chr6 34998730 34999405 -147415837 - Tigger3b DNA MER2_type -2325 703 2 419 409 25 9 chr6 34999614 34999934 -147415308 + L1MEc LINE L1 801 1125 -5997 308 282 35 36 chr6 35000311 35000466 -147414776 + L1MEc LINE L1 1370 1491 -4932 * 377 302 67 38 chr6 35000452 35000796 -147414446 + L1M4 LINE L1 3211 3564 -2582 1657 135 11 0 chr6 35000814 35001074 -147414168 + MER2 DNA MER2_type 1 263 -82 2652 121 14 3 chr6 35001185 35001556 -147413686 + THE1C LTR MaLR 1 375 0 2427 263 90 25 chr6 35001566 35002698 -147412544 + L1M4 LINE L1 3593 4798 -1348 477 170 16 0 chr6 35002713 35002822 -147412420 - L1 LINE L1 -1079 5067 4954 821 207 30 18 chr6 35002823 35002987 -147412255 - FRAM SINE Alu -10 166 1 321 250 11 11 chr6 35002992 35003084 -147412158 - L1 LINE L1 -1191 4955 4864 * 3016 222 38 148 chr6 35003078 35003263 -147411979 - L1M4c LINE L1 -4573 2073 1869 803 116 7 22 chr6 35003263 35003401 -147411841 - L1MB2 LINE L1 -1 6170 6035 3016 222 38 148 chr6 35003401 35005509 -147409733 - L1M4c LINE L1 -4777 1869 2 557 270 61 86 chr6 35005508 35005727 -147409515 - L1MEc LINE L1 -4535 1861 1657 * 513 149 53 0 chr6 35005727 35005821 -147409421 + L1MA7 LINE L1 6187 6285 -6 557 270 61 86 chr6 35005821 35006045 -147409197 - L1MEc LINE L1 -4739 1657 1429 900 256 68 8 chr6 35006204 35006454 -147408788 + MLT2D LTR ERVL 1 265 -149 1556 208 6 60 chr6 35006455 35006806 -147408436 + MER21B-int LTR ERV1 2341 2672 -1519 931 113 21 0 chr6 35006806 35006948 -147408294 + MSTA LTR MaLR 1 145 -283 410 219 0 0 chr6 35006948 35007021 -147408221 + MER21B-int LTR ERV1 2667 2739 -1452 435 256 85 16 chr6 35007027 35007156 -147408086 + FRAM SINE Alu 16 153 -23 527 194 22 72 chr6 35007166 35007305 -147407937 + MER21B-int LTR ERV1 2742 2873 -1318 2023 149 0 0 chr6 35007310 35007612 -147407630 + AluSx SINE Alu 1 302 -10 2944 237 61 42 chr6 35007663 35008004 -147407238 + MER21B-int LTR ERV1 3068 3401 -790 414 0 0 0 chr6 35008004 35008050 -147407192 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2944 237 61 42 chr6 35008050 35008663 -147406579 + MER21B-int LTR ERV1 3401 4040 -151 1459 232 0 10 chr6 35008760 35009070 -147406172 + AluJo SINE Alu 1 307 -5 1341 261 11 25 chr6 35009111 35009467 -147405775 + MER21B LTR ERV1 2 352 -511 343 183 24 24 chr6 35009986 35010068 -147405174 + MER4C LTR ERV1 65 146 -319 516 337 34 4 chr6 35010883 35011147 -147404095 - LTR16B LTR ERVL -131 333 62 1423 338 40 36 chr6 35011155 35012374 -147402868 - ERVL LTR ERVL -504 5260 3693 * 1785 298 60 40 chr6 35012373 35013226 -147402016 - ERVL LTR ERVL -2240 3524 2655 265 175 0 0 chr6 35013284 35013324 -147401918 - Alu SINE Alu -19 283 244 * 286 167 21 0 chr6 35013315 35013363 -147401879 - AluSg/x SINE Alu -136 166 118 2133 113 7 0 chr6 35013368 35013668 -147401574 - AluSp SINE Alu -9 304 3 2026 288 53 48 chr6 35013679 35014652 -147400590 - ERVL LTR ERVL -2430 2566 1589 645 312 57 34 chr6 35014950 35015151 -147400091 - ERVL LTR ERVL -3783 1213 999 2033 137 90 29 chr6 35015151 35015494 -147399748 + THE1B LTR MaLR 1 364 0 645 312 57 34 chr6 35015494 35015645 -147399597 - ERVL LTR ERVL -3997 999 853 303 318 94 54 chr6 35015793 35016070 -147399172 - ERVL LTR ERVL -4444 552 265 703 272 78 99 chr6 35016323 35016486 -147398756 - LTR16B LTR ERVL 0 464 299 1691 134 0 0 chr6 35016486 35016725 -147398517 - AluSx SINE Alu -73 239 1 703 272 78 99 chr6 35016725 35017035 -147398207 - LTR16B LTR ERVL -165 299 1 1953 249 68 46 chr6 35017038 35017804 -147397438 - L2 LINE L2 -1661 1653 871 254 233 122 0 chr6 35017876 35017966 -147397276 - L2 LINE L2 -2411 903 803 212 241 63 0 chr6 35018068 35018147 -147397095 - L2 LINE L2 -2513 801 718 1680 261 71 27 chr6 35018176 35018671 -147396571 - MLT1E2 LTR MaLR -11 615 88 2608 26 7 10 chr6 35018671 35018981 -147396261 - AluY SINE Alu -2 309 1 1680 261 71 27 chr6 35018981 35019074 -147396168 - MLT1E2 LTR MaLR -538 88 1 1364 282 105 14 chr6 35019081 35019702 -147395540 - L2 LINE L2 -2620 694 18 2056 131 84 6 chr6 35020932 35021275 -147393967 - Tigger1 DNA MER2_type 0 2418 2049 2357 169 10 5 chr6 35021281 35021678 -147393564 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 35021679 35021717 -147393525 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 35021960 35022041 -147393201 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 35022314 35022535 -147392707 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 35022961 35023055 -147392187 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 35023337 35023673 -147391569 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 35024106 35024131 -147391111 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 35024329 35024749 -147390493 + LTR33 LTR ERVL 10 442 -79 777 169 29 22 chr6 35024858 35024994 -147390248 - AluJo SINE Alu -174 138 2 2513 71 0 0 chr6 35029444 35029741 -147385501 - AluY SINE Alu -14 297 1 855 198 17 6 chr6 35030199 35030376 -147384866 - MLT1B LTR MaLR 0 390 212 2501 68 0 16 chr6 35030541 35030850 -147384392 + AluY SINE Alu 1 304 -7 2817 142 2 4 chr6 35031188 35031645 -147383597 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 35031842 35031896 -147383346 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2376 50 30 3 chr6 35031955 35032253 -147382989 - AluY SINE Alu -5 306 1 371 328 121 3 chr6 35032273 35032631 -147382611 - L1ME3 LINE L1 -211 5951 5552 391 280 252 5 chr6 35032631 35032845 -147382397 + L2 LINE L2 1984 2250 -1064 499 275 76 9 chr6 35032878 35033089 -147382153 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 35033304 35033543 -147381699 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 35033683 35033727 -147381515 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 35034475 35034581 -147380661 + MER5A DNA MER1_type 3 112 -77 543 103 0 0 chr6 35034623 35034720 -147380522 + (TC)n Simple_repeat Simple_repeat 2 98 0 4612 75 0 2 chr6 35035035 35035605 -147379637 - MER61E LTR ERV1 0 569 1 309 342 63 32 chr6 35035606 35035764 -147379478 + L2 LINE L2 3110 3272 0 1598 186 6 46 chr6 35037820 35037972 -147377270 + AluJo SINE Alu 1 135 -177 321 26 0 0 chr6 35037972 35038010 -147377232 + (CA)n Simple_repeat Simple_repeat 2 39 0 1598 186 6 46 chr6 35038010 35038180 -147377062 + AluJo SINE Alu 135 310 -2 2370 174 109 79 chr6 35038869 35039214 -147376028 - LTR8A LTR ERV1 0 727 394 2620 45 7 0 chr6 35039214 35039523 -147375719 + AluY SINE Alu 1 311 0 2370 174 109 79 chr6 35039523 35039883 -147375359 - LTR8A LTR ERV1 -333 394 1 913 192 0 0 chr6 35040487 35040643 -147374599 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 35040780 35040802 -147374440 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 35040827 35041087 -147374155 - AluSq SINE Alu -53 260 1 448 312 1 2 chr6 35041199 35041348 -147373894 + L1ME1 LINE L1 6027 6178 0 371 243 32 119 chr6 35041358 35041576 -147373666 + L1MC4 LINE L1 7779 7977 -65 203 303 0 45 chr6 35041612 35041701 -147373541 + CT-rich Low_complexity Low_complexity 2 86 0 2513 59 3 0 chr6 35042391 35042695 -147372547 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 35043193 35043274 -147371968 + MIR SINE MIR 22 98 -110 231 306 0 0 chr6 35043513 35043562 -147371680 - L2 LINE L2 -82 3190 3142 1053 160 11 6 chr6 35043586 35043761 -147371481 + FRAM SINE Alu 1 176 0 752 246 29 11 chr6 35043820 35043995 -147371247 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 35044075 35044187 -147371055 - L1MB7 LINE L1 -17 6167 6061 2461 78 3 3 chr6 35044196 35044505 -147370737 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 35044530 35044631 -147370611 - HY3 scRNA scRNA 0 101 1 1350 43 25 0 chr6 35046286 35046448 -147368794 - AluY SINE Alu -13 298 133 2730 33 0 0 chr6 35046448 35046754 -147368488 - AluYb8 SINE Alu -12 306 1 9598 141 20 12 chr6 35048288 35050042 -147365200 - L1MA3 LINE L1 0 6305 4517 2291 107 3 3 chr6 35050042 35050341 -147364901 + AluSp SINE Alu 1 299 -14 9598 141 20 12 chr6 35050341 35051317 -147363925 - L1MA3 LINE L1 -1788 4517 3551 3225 202 63 65 chr6 35051311 35051938 -147363304 - L1MB2 LINE L1 -4 6167 5540 * 327 25 0 0 chr6 35051938 35051978 -147363264 + (TG)n Simple_repeat Simple_repeat 1 40 0 3225 202 63 65 chr6 35051978 35052251 -147362991 - L1MB2 LINE L1 -631 5540 5268 2561 80 0 0 chr6 35052251 35052562 -147362680 - AluY SINE Alu 0 311 1 3225 202 63 65 chr6 35052562 35052926 -147362316 - L1MB2 LINE L1 -903 5268 4899 2307 141 25 13 chr6 35058085 35058482 -147356760 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 35058532 35058843 -147356399 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 35058843 35058878 -147356364 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 35058906 35058929 -147356313 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 35059826 35059854 -147355388 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2598 70 0 3 chr6 35060053 35060365 -147354877 - AluY SINE Alu 0 311 1 711 270 22 65 chr6 35060404 35060759 -147354483 - L1MC5 LINE L1 -519 7442 7103 2278 106 3 0 chr6 35060760 35061062 -147354180 + AluSp SINE Alu 1 303 -10 384 282 110 38 chr6 35061177 35061386 -147353856 + L1ME3A LINE L1 5932 6155 -15 698 309 87 5 chr6 35061685 35062054 -147353188 + ERVL LTR ERVL 3876 4274 -1490 585 333 85 48 chr6 35062172 35062656 -147352586 + L1M4 LINE L1 3437 3938 -2208 2942 126 8 33 chr6 35062702 35062796 -147352446 + L1PA15 LINE L1 5694 5789 -376 2446 64 0 0 chr6 35062796 35063108 -147352134 + AluY SINE Alu 1 312 0 2942 126 8 33 chr6 35063108 35063495 -147351747 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 35063534 35063592 -147351650 + AluY SINE Alu 2 59 -259 343 216 91 0 chr6 35063592 35063680 -147351562 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 35064954 35065267 -147349975 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 35065364 35065773 -147349469 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 35065773 35065865 -147349377 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 35065865 35066346 -147348896 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 35066360 35066637 -147348605 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 35066683 35066795 -147348447 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 35066802 35066961 -147348281 + L1M4 LINE L1 3440 3606 -2540 2322 79 7 3 chr6 35067179 35067471 -147347771 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 35067659 35067962 -147347280 + AluSx SINE Alu 3 305 -7 4876 204 35 47 chr6 35068381 35069151 -147346091 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 35069151 35069444 -147345798 - AluSg SINE Alu -17 293 1 4876 204 35 47 chr6 35069444 35069849 -147345393 + L1M4 LINE L1 4391 4772 -1374 3835 124 35 51 chr6 35069849 35070015 -147345227 + L1MA8 LINE L1 5553 5720 -571 620 189 90 0 chr6 35070015 35070137 -147345105 - FLAM_A SINE Alu 0 133 1 3835 124 35 51 chr6 35070137 35070717 -147344525 + L1MA8 LINE L1 5720 6287 -4 4876 204 35 47 chr6 35070717 35070896 -147344346 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 35070901 35070978 -147344264 + MIR SINE MIR 159 236 -26 818 169 36 89 chr6 35071327 35071377 -147343865 - MSTD LTR MaLR 0 396 345 1927 148 7 3 chr6 35071377 35071675 -147343567 - AluJb SINE Alu -12 300 2 818 169 36 89 chr6 35071675 35071889 -147343353 - MSTD LTR MaLR -51 345 78 2524 86 0 0 chr6 35071889 35072190 -147343052 + AluSq SINE Alu 1 301 -12 818 169 36 89 chr6 35072190 35072265 -147342977 - MSTD LTR MaLR -318 78 1 2540 70 0 10 chr6 35072351 35072663 -147342579 - AluSc SINE Alu 0 309 1 1921 154 0 0 chr6 35072987 35073267 -147341975 + AluSx SINE Alu 1 280 -32 2455 92 0 9 chr6 35073298 35073613 -147341629 - AluSx SINE Alu 0 312 1 1561 163 119 41 chr6 35074467 35074632 -147340610 - Tigger1 DNA MER2_type 0 2418 2267 2193 108 4 0 chr6 35074632 35074910 -147340332 - AluSx SINE Alu -33 279 1 1561 163 119 41 chr6 35074910 35075106 -147340136 - Tigger1 DNA MER2_type -151 2267 2029 * 1749 188 51 30 chr6 35075101 35075494 -147339748 - Tigger1 DNA MER2_type -2017 401 1 2641 47 0 0 chr6 35075747 35076046 -147339196 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 35076840 35076919 -147338323 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 35076874 35076924 -147338318 + G-rich Low_complexity Low_complexity 3 52 0 1766 142 0 51 chr6 35079822 35080117 -147335125 - AluJo SINE Alu -24 288 9 1797 181 0 3 chr6 35080245 35080533 -147334709 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 35080907 35080955 -147334287 + G-rich Low_complexity Low_complexity 1 48 0 1138 145 0 0 chr6 35081631 35081783 -147333459 - FAM SINE Alu -22 163 12 1816 161 41 3 chr6 35081999 35082291 -147332951 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 35082503 35082542 -147332700 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 35083287 35083352 -147331890 + GA-rich Low_complexity Low_complexity 3 67 0 193 352 127 21 chr6 35084768 35084910 -147330332 - MIR3 SINE MIR -14 194 38 1092 140 73 0 chr6 35084954 35085133 -147330109 + AluSp SINE Alu 121 312 -1 1661 182 10 10 chr6 35085136 35085443 -147329799 + AluSx SINE Alu 1 307 -5 293 332 88 27 chr6 35085542 35085746 -147329496 + L1MC4a LINE L1 7097 7326 -482 2174 113 10 10 chr6 35085746 35086056 -147329186 + AluSx SINE Alu 1 310 -2 293 332 88 27 chr6 35086056 35086146 -147329096 + L1MC4a LINE L1 7326 7409 -399 1985 164 0 3 chr6 35086149 35086442 -147328800 - AluSx SINE Alu -14 298 7 352 143 0 0 chr6 35087994 35088050 -147327192 - AluJ SINE Alu -36 266 211 886 155 0 27 chr6 35088051 35088199 -147327043 - AluJ SINE Alu -168 144 1 2032 83 79 4 chr6 35090660 35090937 -147324305 - AluSx SINE Alu -14 298 1 214 349 167 0 chr6 35091116 35091242 -147324000 - MIR SINE MIR -64 198 52 486 256 96 45 chr6 35091413 35091573 -147323669 - L2 LINE L2 -1 3312 3139 1546 169 68 0 chr6 35091573 35091839 -147323403 + AluJo SINE Alu 5 288 -24 486 256 96 45 chr6 35091839 35091877 -147323365 - L2 LINE L2 -174 3139 3104 2322 116 0 0 chr6 35092082 35092383 -147322859 + AluSp SINE Alu 1 301 -12 562 265 51 25 chr6 35092882 35093078 -147322164 - MIR SINE MIR -13 249 49 389 216 128 88 chr6 35096690 35096838 -147318404 + MIR SINE MIR 7 160 -102 750 241 97 5 chr6 35096838 35097054 -147318188 - MIR SINE MIR -26 236 1 237 232 122 24 chr6 35097119 35097201 -147318041 + MIR SINE MIR 173 262 0 2141 141 10 0 chr6 35097216 35097521 -147317721 - AluSq SINE Alu -5 308 1 953 250 50 28 chr6 35097543 35097863 -147317379 + MER46C DNA MER2_type 1 327 -11 2256 115 0 3 chr6 35097889 35098184 -147317058 + AluSg SINE Alu 1 294 -16 2331 94 13 0 chr6 35098647 35098955 -147316287 - AluSp SINE Alu -1 312 1 1828 175 7 3 chr6 35098987 35099295 -147315947 - AluJo SINE Alu -3 309 1 301 258 29 84 chr6 35099306 35099485 -147315757 - MIR SINE MIR -68 140 7 2153 106 0 81 chr6 35099566 35099753 -147315489 - AluSx SINE Alu -14 298 146 2240 118 0 10 chr6 35099753 35100066 -147315176 - AluSx SINE Alu -2 310 1 2153 106 0 81 chr6 35100066 35100198 -147315044 - AluSx SINE Alu -166 146 5 2130 78 0 57 chr6 35100214 35100556 -147314686 - AluSc SINE Alu 0 325 1 2495 75 0 31 chr6 35100652 35100973 -147314269 - AluY SINE Alu 0 311 1 2104 110 30 20 chr6 35101009 35101308 -147313934 - AluSx SINE Alu -10 302 1 2339 108 0 0 chr6 35101624 35101930 -147313312 - AluSg1 SINE Alu -3 306 1 1806 142 13 33 chr6 35102094 35102397 -147312845 + AluJo SINE Alu 1 297 -15 242 269 220 29 chr6 35102409 35102759 -147312483 + L1ME4a LINE L1 5209 5373 -773 425 323 63 36 chr6 35102793 35103048 -147312194 + L1ME4a LINE L1 5742 6004 -117 2550 77 0 6 chr6 35103196 35103508 -147311734 - AluSx SINE Alu -2 310 1 1801 84 3 133 chr6 35103583 35103928 -147311314 - AluSg SINE Alu 0 300 1 2524 67 0 3 chr6 35105076 35105376 -147309866 - AluY SINE Alu -12 299 1 1990 122 16 36 chr6 35109371 35109674 -147305568 + AluSx SINE Alu 1 297 -15 313 254 172 0 chr6 35109674 35109796 -147305446 - L2 LINE L2 -21 3292 3150 342 328 221 5 chr6 35109842 35110290 -147304952 - L2 LINE L2 -975 2339 1795 2123 132 17 0 chr6 35110551 35110847 -147304395 + AluSx SINE Alu 1 301 -11 2092 133 7 3 chr6 35110849 35111142 -147304100 + AluSg SINE Alu 3 296 -14 2311 94 0 0 chr6 35111588 35111875 -147303367 - AluSq SINE Alu -25 288 2 2418 92 0 13 chr6 35112237 35112551 -147302691 - AluY SINE Alu -1 310 1 2147 121 0 26 chr6 35112592 35112899 -147302343 + AluJo SINE Alu 1 299 -13 667 226 147 38 chr6 35113468 35113865 -147301377 + L2 LINE L2 2194 2713 -601 2227 116 3 0 chr6 35113867 35114160 -147301082 + AluSg SINE Alu 1 294 -16 803 230 0 0 chr6 35114174 35114326 -147300916 + FRAM SINE Alu 9 160 -16 2120 140 17 0 chr6 35114329 35114629 -147300613 + AluSx SINE Alu 1 305 -7 2293 113 10 0 chr6 35114629 35114930 -147300312 + AluSx SINE Alu 1 304 -8 286 152 22 0 chr6 35114935 35114981 -147300261 + AluJo SINE Alu 1 47 -253 2119 118 14 0 chr6 35114982 35115278 -147299964 + AluSq SINE Alu 1 300 -13 1452 175 15 41 chr6 35115278 35115545 -147299697 + AluJo SINE Alu 36 296 -16 282 116 0 0 chr6 35115564 35115607 -147299635 + (TC)n Simple_repeat Simple_repeat 1 43 0 296 102 20 0 chr6 35115614 35115663 -147299579 + (CA)n Simple_repeat Simple_repeat 2 51 0 977 297 64 16 chr6 35115671 35116210 -147299032 + L2 LINE L2 2741 3313 0 315 264 22 0 chr6 35116401 35116492 -147298750 + (TTAGGG)n Simple_repeat Simple_repeat 4 96 0 2075 136 0 10 chr6 35116940 35117271 -147297971 - AluY SINE Alu 0 311 1 2263 101 7 13 chr6 35117473 35117780 -147297462 + AluSx SINE Alu 1 305 -7 2698 114 12 7 chr6 35117780 35118179 -147297063 + MER39 LTR ERV1 307 707 0 1506 218 85 22 chr6 35118554 35119003 -147296239 + L1ME3 LINE L1 5684 6160 -2 2214 125 3 0 chr6 35119022 35119319 -147295923 - AluSx SINE Alu -14 298 1 502 232 16 0 chr6 35119616 35119741 -147295501 + MER94 DNA DNA 1 127 -7 286 242 34 56 chr6 35120415 35120593 -147294649 + (TCTCTG)n Simple_repeat Simple_repeat 2 175 0 204 40 0 0 chr6 35120664 35120689 -147294553 + (TC)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr6 35122023 35122047 -147293195 + AT_rich Low_complexity Low_complexity 1 24 0 264 321 0 22 chr6 35123943 35124080 -147291162 + GA-rich Low_complexity Low_complexity 2 135 0 183 191 0 48 chr6 35124080 35124122 -147291120 + L2 LINE L2 3220 3259 -13 222 37 0 0 chr6 35124123 35124150 -147291092 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 180 227 0 23 chr6 35124309 35124353 -147290889 + L2 LINE L2 3223 3265 -7 217 0 61 0 chr6 35125959 35125992 -147289250 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 229 228 63 51 chr6 35126488 35126567 -147288675 - LTR42 LTR ERVL -331 164 85 779 168 0 44 chr6 35126949 35127086 -147288156 + FLAM_C SINE Alu 2 132 -1 1835 161 0 16 chr6 35127248 35127553 -147287689 + AluJo SINE Alu 5 304 -8 22 35 0 0 chr6 35128952 35128981 -147286261 + GC_rich Low_complexity Low_complexity 1 29 0 339 271 186 0 chr6 35130592 35130721 -147284521 - MIR3 SINE MIR -24 184 32 2267 100 3 3 chr6 35131213 35131524 -147283718 + AluSx SINE Alu 1 311 -1 1853 167 0 0 chr6 35131685 35131978 -147283264 - AluJb SINE Alu -19 293 1 499 146 62 0 chr6 35132007 35132103 -147283139 - MIR SINE MIR -132 130 29 2067 140 0 0 chr6 35132137 35132444 -147282798 + AluSq SINE Alu 1 307 -6 2091 128 0 0 chr6 35132452 35132748 -147282494 + AluSx SINE Alu 1 296 -16 1604 183 52 0 chr6 35132948 35133237 -147282005 + AluJo SINE Alu 1 304 -8 199 342 144 5 chr6 35134918 35135105 -147280137 + MIR SINE MIR 20 232 -30 227 275 184 9 chr6 35135144 35135253 -147279989 - MIR SINE MIR -60 148 21 245 210 24 8 chr6 35136078 35136202 -147279040 + GA-rich Low_complexity Low_complexity 2 127 0 667 219 8 0 chr6 35136211 35136334 -147278908 + FLAM_A SINE Alu 2 125 -8 453 36 0 0 chr6 35136334 35136389 -147278853 + (GA)n Simple_repeat Simple_repeat 2 56 0 37 0 0 0 chr6 35136809 35136846 -147278396 + AT_rich Low_complexity Low_complexity 1 37 0 2372 66 0 7 chr6 35138278 35138579 -147276663 + AluSg SINE Alu 1 299 -11 1641 135 40 0 chr6 35138790 35139042 -147276200 - AluSx SINE Alu -4 308 47 475 83 0 0 chr6 35139043 35139103 -147276139 - AluS SINE Alu -219 93 34 470 168 257 0 chr6 35139277 35139390 -147275852 - MER5A DNA MER1_type 0 189 48 1953 138 7 0 chr6 35139472 35139761 -147275481 + AluSx SINE Alu 1 291 -21 2026 121 3 7 chr6 35139775 35139906 -147275336 + AluSx SINE Alu 4 134 -178 2271 101 0 0 chr6 35139906 35140202 -147275040 + AluSx SINE Alu 1 296 -16 2026 121 3 7 chr6 35140202 35140368 -147274874 + AluSx SINE Alu 134 300 -12 459 0 0 0 chr6 35141265 35141316 -147273926 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 100 0 0 chr6 35141325 35141606 -147273636 - AluSx SINE Alu -5 307 27 1663 149 46 7 chr6 35141610 35141892 -147273350 - AluJb SINE Alu -18 294 2 1439 114 0 30 chr6 35141893 35141993 -147273249 - Tigger1 DNA MER2_type -941 1477 1376 2426 77 3 0 chr6 35141993 35142305 -147272937 + AluSp SINE Alu 1 313 0 1439 114 0 30 chr6 35142305 35142441 -147272801 - Tigger1 DNA MER2_type -1042 1376 1248 1684 181 0 3 chr6 35142441 35142733 -147272509 + AluJo SINE Alu 1 291 -21 1538 207 0 37 chr6 35142785 35142872 -147272370 + AluJb SINE Alu 1 90 -222 2311 95 0 0 chr6 35142872 35143177 -147272065 + AluY SINE Alu 1 305 -6 1538 207 0 37 chr6 35143177 35143413 -147271829 + AluJb SINE Alu 90 312 0 473 103 47 103 chr6 35143417 35143465 -147271777 - Tigger1 DNA MER2_type -1152 1266 1217 2073 113 0 0 chr6 35143465 35143782 -147271460 - AluSx SINE Alu 0 317 1 473 103 47 103 chr6 35143782 35143839 -147271403 - Tigger1 DNA MER2_type -1201 1217 1166 586 250 32 0 chr6 35143839 35143963 -147271279 + FAM SINE Alu 1 128 -57 1300 132 0 45 chr6 35143970 35143995 -147271247 + AluJo SINE Alu 85 110 -202 1757 167 34 0 chr6 35143995 35144289 -147270953 - AluJb SINE Alu -8 304 1 1300 132 0 45 chr6 35144289 35144321 -147270921 + AluJo SINE Alu 110 142 -170 1857 134 27 0 chr6 35144321 35144613 -147270629 + AluSp SINE Alu 3 302 -11 1300 132 0 45 chr6 35144613 35144774 -147270468 + AluJo SINE Alu 142 294 -18 1071 136 25 5 chr6 35144774 35144973 -147270269 - Tigger1 DNA MER2_type -2192 226 24 1082 176 22 22 chr6 35145137 35145359 -147269883 - AluJo SINE Alu -23 289 68 2205 75 0 3 chr6 35145366 35145676 -147269566 - AluSg SINE Alu 0 309 1 1873 136 7 0 chr6 35145698 35146005 -147269237 - AluSx SINE Alu 0 309 1 1586 170 0 55 chr6 35146210 35146522 -147268720 - AluJo SINE Alu -17 295 1 2221 93 7 0 chr6 35146955 35147255 -147267987 + AluSq SINE Alu 1 302 -11 2264 100 0 0 chr6 35147732 35148031 -147267211 - AluSg SINE Alu -7 303 5 2241 92 3 7 chr6 35148146 35148451 -147266791 - AluSx SINE Alu -8 304 1 2204 98 26 0 chr6 35148845 35149150 -147266092 - AluSq SINE Alu 0 313 1 2346 70 0 7 chr6 35149212 35149514 -147265728 - AluY SINE Alu -11 300 1 1897 210 12 31 chr6 35149524 35149739 -147265503 - L1ME2 LINE L1 -1 6163 5946 1690 156 0 55 chr6 35149739 35149918 -147265324 - AluJo SINE Alu -21 291 135 2061 110 0 42 chr6 35149918 35150227 -147265015 + AluSg SINE Alu 1 296 -14 1690 156 0 55 chr6 35150227 35150355 -147264887 - AluJo SINE Alu -177 135 1 1897 210 12 31 chr6 35150355 35150625 -147264617 - L1ME2 LINE L1 -218 5946 5687 2258 99 3 0 chr6 35150886 35151188 -147264054 - AluSq SINE Alu -10 303 1 566 214 0 53 chr6 35151219 35151350 -147263892 - FLAM_A SINE Alu -6 136 13 526 372 75 10 chr6 35151383 35151767 -147263475 + L2 LINE L2 2163 2571 -743 229 204 41 0 chr6 35152132 35152181 -147263061 - L2 LINE L2 0 3313 3263 287 377 0 11 chr6 35152185 35152206 -147263036 + CT-rich Low_complexity Low_complexity 2 22 -152 1717 126 0 0 chr6 35152206 35152445 -147262797 - AluSx SINE Alu -73 239 1 287 377 0 11 chr6 35152445 35152598 -147262644 + CT-rich Low_complexity Low_complexity 22 174 0 2050 105 35 0 chr6 35152748 35153033 -147262209 + AluSg SINE Alu 1 295 -15 1964 118 0 0 chr6 35153133 35153437 -147261805 + AluY SINE Alu 4 307 0 2107 106 7 0 chr6 35153620 35153912 -147261330 + AluSx SINE Alu 1 294 -18 773 190 70 0 chr6 35153972 35154130 -147261112 + LTR26E LTR ERV1 1 169 -453 24 0 0 0 chr6 35154162 35154186 -147261056 + AT_rich Low_complexity Low_complexity 1 24 0 2062 116 0 10 chr6 35154188 35154489 -147260753 + AluSc SINE Alu 1 298 -11 1358 99 241 0 chr6 35154492 35154724 -147260518 + AluSg1 SINE Alu 7 294 -15 944 191 0 0 chr6 35154726 35154894 -147260348 + AluJo/FRAM SINE Alu 137 304 -8 2163 102 0 7 chr6 35154905 35155209 -147260033 + AluSx SINE Alu 1 302 -10 968 181 6 0 chr6 35155214 35155374 -147259868 + FRAM SINE Alu 5 165 -1 744 179 122 0 chr6 35155374 35155530 -147259712 - LTR48 LTR ERV1 -438 349 175 329 194 0 42 chr6 35155546 35155618 -147259624 - LTR48B LTR ERV1 -575 69 1 2069 90 11 0 chr6 35155740 35156018 -147259224 - AluSp SINE Alu -32 281 1 519 191 275 39 chr6 35156155 35156333 -147258909 + L2 LINE L2 2758 2977 -337 23 0 0 0 chr6 35156345 35156368 -147258874 + AT_rich Low_complexity Low_complexity 1 23 0 2212 58 7 20 chr6 35156372 35156666 -147258576 + AluY SINE Alu 3 292 -19 2303 87 0 0 chr6 35156666 35156965 -147258277 + AluY SINE Alu 1 299 -12 1785 172 23 0 chr6 35156979 35157282 -147257960 + AluJo SINE Alu 1 310 -2 1799 149 3 3 chr6 35157282 35157564 -147257678 + AluJb SINE Alu 1 282 -30 345 47 0 0 chr6 35157582 35157625 -147257617 + (TG)n Simple_repeat Simple_repeat 2 44 0 277 194 42 28 chr6 35157625 35157687 -147257555 + MER21B LTR ERV1 20 85 -778 1523 266 106 22 chr6 35157742 35158362 -147256880 + MER21B LTR ERV1 98 803 -60 2313 93 0 0 chr6 35158371 35158682 -147256560 + AluY SINE Alu 1 311 0 210 71 0 0 chr6 35159219 35159247 -147255995 + (TCC)n Simple_repeat Simple_repeat 3 30 0 2130 122 0 0 chr6 35159374 35159669 -147255573 + AluSc SINE Alu 1 295 -14 2145 93 3 17 chr6 35159984 35160285 -147254957 + AluSg SINE Alu 1 297 -13 447 264 61 141 chr6 35160285 35160343 -147254899 + L2 LINE L2 3014 3075 -238 1084 170 0 0 chr6 35160343 35160508 -147254734 - FRAM SINE Alu -1 165 1 447 264 61 141 chr6 35160508 35160541 -147254701 + L2 LINE L2 3075 3109 -204 2103 98 0 0 chr6 35160541 35160818 -147254424 + AluSg SINE Alu 14 290 -20 2215 113 3 0 chr6 35160818 35161128 -147254114 + AluSx SINE Alu 1 312 0 447 264 61 141 chr6 35161128 35161202 -147254040 + L2 LINE L2 3108 3186 -127 2386 78 0 0 chr6 35161202 35161508 -147253734 - AluSg SINE Alu -4 306 1 447 264 61 141 chr6 35161508 35161665 -147253577 + L2 LINE L2 3186 3313 0 2215 91 0 3 chr6 35161783 35162079 -147253163 + AluSc SINE Alu 1 295 -14 214 240 133 0 chr6 35165241 35165316 -147249926 + MIR SINE MIR 65 149 -113 2122 94 6 31 chr6 35165378 35165698 -147249544 + AluSp SINE Alu 1 312 -1 2321 90 3 3 chr6 35165757 35166068 -147249174 + AluSq SINE Alu 1 311 -2 335 326 7 21 chr6 35166069 35166210 -147249032 - L2 LINE L2 -1489 1825 1687 818 119 32 0 chr6 35166482 35166608 -147248634 - AluSq/x SINE Alu -180 133 4 2348 91 3 0 chr6 35166621 35166929 -147248313 - AluSc SINE Alu 0 309 1 2354 76 10 0 chr6 35166995 35167299 -147247943 - AluSp SINE Alu -2 311 5 1981 78 89 0 chr6 35167303 35167584 -147247658 - AluSg SINE Alu -4 306 1 243 146 0 0 chr6 35168839 35168880 -147246362 + (CGG)n Simple_repeat Simple_repeat 2 42 0 2207 96 3 3 chr6 35171192 35171493 -147243749 - AluSp SINE Alu -4 309 9 2243 61 7 14 chr6 35172737 35173031 -147242211 - AluSc SINE Alu -17 292 1 1597 176 20 20 chr6 35174204 35174506 -147240736 + AluJo SINE Alu 1 302 -10 612 200 18 0 chr6 35175434 35175544 -147239698 + FLAM_A SINE Alu 12 123 -19 751 148 0 56 chr6 35176380 35176495 -147238747 + AluJo SINE Alu 1 108 -204 2053 128 3 0 chr6 35176495 35176783 -147238459 + AluSg SINE Alu 1 289 -21 751 148 0 56 chr6 35176783 35176809 -147238433 + AluJo SINE Alu 108 134 -178 213 132 0 0 chr6 35177494 35177532 -147237710 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1992 108 7 3 chr6 35177968 35178254 -147236988 + AluSx SINE Alu 1 287 -25 722 184 35 21 chr6 35178842 35178983 -147236259 + FLAM_C SINE Alu 1 143 0 568 268 89 21 chr6 35185820 35186055 -147229187 - MLT1H1 LTR MaLR -51 504 254 2187 82 6 32 chr6 35186534 35186849 -147228393 + AluSg SINE Alu 1 307 -3 258 302 35 12 chr6 35190569 35190655 -147224587 + MIR3 SINE MIR 103 190 -18 1305 166 78 68 chr6 35191075 35191371 -147223871 + AluJo SINE Alu 1 299 -13 2318 81 3 7 chr6 35191374 35191682 -147223560 + AluSc SINE Alu 1 307 -2 2206 115 7 0 chr6 35193917 35194221 -147221021 - AluSx SINE Alu -6 306 1 1599 84 18 4 chr6 35194602 35194696 -147220546 - AluSq SINE Alu -85 228 137 2534 71 0 0 chr6 35194696 35195007 -147220235 - AluY SINE Alu 0 311 1 1599 84 18 4 chr6 35195007 35195137 -147220105 - AluSq SINE Alu -176 137 1 215 337 74 0 chr6 35195854 35195949 -147219293 + L2 LINE L2 3199 3300 -13 2065 134 0 0 chr6 35195951 35196250 -147218992 - AluSx SINE Alu -13 299 1 2049 117 10 7 chr6 35197754 35198054 -147217188 + AluSx SINE Alu 1 301 -11 2248 100 0 10 chr6 35198320 35198629 -147216613 + AluSq SINE Alu 7 312 -1 2232 112 0 0 chr6 35199191 35199496 -147215746 + AluSx SINE Alu 1 305 -7 327 25 0 0 chr6 35200255 35200295 -147214947 + (CA)n Simple_repeat Simple_repeat 2 41 0 1457 161 119 0 chr6 35201620 35201881 -147213361 - AluJo SINE Alu -20 292 1 2064 74 57 7 chr6 35201911 35202194 -147213048 + AluSg1 SINE Alu 1 297 -12 929 172 65 6 chr6 35202335 35202504 -147212738 + AluJb SINE Alu 1 179 -133 267 149 0 0 chr6 35202527 35202582 -147212660 + Alu SINE Alu 254 302 0 292 242 172 0 chr6 35202733 35202861 -147212381 - MIR SINE MIR 0 262 113 1901 132 21 0 chr6 35202880 35203169 -147212073 - AluJb SINE Alu -17 295 1 232 381 42 36 chr6 35203371 35203539 -147211703 + L2 LINE L2 3104 3272 0 2413 74 0 0 chr6 35204794 35205092 -147210150 + AluY SINE Alu 1 298 -13 2258 93 3 0 chr6 35209354 35209654 -147205588 + AluSp SINE Alu 1 301 -12 687 142 0 9 chr6 35210770 35210876 -147204366 + FLAM_C SINE Alu 1 105 -38 1023 130 56 6 chr6 35210883 35211044 -147204198 - AluSg/x SINE Alu -10 302 134 711 116 0 78 chr6 35211056 35211185 -147204057 + AluSg/x SINE Alu 186 304 -5 723 107 18 27 chr6 35211227 35211339 -147203903 + HY1 scRNA scRNA 1 111 -1 604 262 219 0 chr6 35211455 35211665 -147203577 - MIR SINE MIR -4 258 3 200 356 0 0 chr6 35215007 35215066 -147200176 + MIR SINE MIR 45 103 -105 2255 105 0 0 chr6 35215067 35215371 -147199871 - AluSx SINE Alu -8 304 1 237 257 29 0 chr6 35217551 35217621 -147197621 + MIR SINE MIR 71 142 -120 1716 179 31 0 chr6 35219326 35219616 -147195626 + AluJb SINE Alu 1 299 -13 2240 91 0 3 chr6 35220380 35220676 -147194566 - AluSg SINE Alu -15 295 1 2212 100 0 0 chr6 35220916 35221207 -147194035 + AluSx SINE Alu 1 291 -21 2282 96 3 0 chr6 35221547 35221850 -147193392 + AluSp SINE Alu 2 305 -8 2098 112 10 0 chr6 35222084 35222380 -147192862 + AluSp SINE Alu 1 299 -14 2093 94 13 20 chr6 35222382 35222681 -147192561 + AluSg SINE Alu 3 299 -11 184 372 66 41 chr6 35222940 35223061 -147192181 - L2 LINE L2 -1 3271 3148 692 171 51 0 chr6 35223308 35223425 -147191817 - FLAM_A SINE Alu -7 126 4 474 243 137 44 chr6 35223464 35223690 -147191552 - L1ME3A LINE L1 -28 6142 5896 1970 107 18 7 chr6 35224011 35224292 -147190950 + AluSx SINE Alu 8 291 -21 384 294 84 70 chr6 35225473 35225830 -147189412 + L1MC4a LINE L1 5683 6044 -1764 520 207 291 6 chr6 35225944 35226123 -147189119 + MIR SINE MIR 12 241 -21 245 391 103 0 chr6 35226198 35226441 -147188801 - L2 LINE L2 -1005 2309 2042 2007 94 39 3 chr6 35226630 35226916 -147188326 + AluSx SINE Alu 1 296 -16 305 360 143 0 chr6 35227549 35227696 -147187546 - L3 LINE CR1 -823 754 587 2236 89 3 0 chr6 35227699 35228001 -147187241 + AluSx SINE Alu 1 303 -9 293 262 272 0 chr6 35228519 35228622 -147186620 - L2 LINE L2 -4 3309 3179 359 289 98 41 chr6 35228678 35228944 -147186298 - L2 LINE L2 -561 2753 2473 990 80 0 15 chr6 35229879 35230016 -147185226 + AluSq/x SINE Alu 1 135 -178 2116 104 3 10 chr6 35230016 35230324 -147184918 + AluSx SINE Alu 1 306 -6 2482 62 0 0 chr6 35230434 35230743 -147184499 + AluSc SINE Alu 1 309 0 294 125 0 0 chr6 35231532 35231580 -147183662 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1782 164 0 22 chr6 35232354 35232665 -147182577 - AluJb SINE Alu -8 304 1 2560 40 0 0 chr6 35233153 35233456 -147181786 + AluY SINE Alu 1 303 -8 1708 122 8 4 chr6 35233463 35233717 -147181525 + AluSx SINE Alu 45 299 -13 222 37 0 0 chr6 35233725 35233752 -147181490 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1957 150 0 3 chr6 35233826 35234126 -147181116 + AluSx SINE Alu 1 299 -13 335 273 93 25 chr6 35234148 35234309 -147180933 + L3 LINE CR1 1275 1446 -131 299 290 56 19 chr6 35238953 35239060 -147176182 - MIR SINE MIR -81 127 17 617 227 87 13 chr6 35239081 35239231 -147176011 + MIR SINE MIR 29 189 -73 249 285 109 80 chr6 35240446 35240583 -147174659 - MIR SINE MIR -14 248 108 1919 143 0 7 chr6 35241993 35242287 -147172955 - AluJo SINE Alu -15 297 6 2359 68 6 10 chr6 35242321 35242632 -147172610 - AluY SINE Alu -1 310 1 490 330 39 11 chr6 35242842 35243021 -147172221 + MIR SINE MIR 47 230 -32 2239 100 3 0 chr6 35243383 35243683 -147171559 + AluSp SINE Alu 1 301 -12 1938 157 7 10 chr6 35243690 35243825 -147171417 + AluSx SINE Alu 1 135 -177 2425 54 3 0 chr6 35243825 35244123 -147171119 + AluY SINE Alu 1 299 -12 1938 157 7 10 chr6 35244123 35244292 -147170950 + AluSx SINE Alu 135 304 -8 2221 102 3 3 chr6 35244292 35244605 -147170637 + AluSq SINE Alu 1 313 0 328 342 40 13 chr6 35245763 35245912 -147169330 - L2 LINE L2 -43 3270 3118 378 186 12 0 chr6 35246063 35246149 -147169093 + HsTC2 DNA Tc2 1 87 -1811 1327 107 0 15 chr6 35246417 35246613 -147168629 - AluSq SINE Alu 0 313 121 303 248 103 8 chr6 35246621 35246738 -147168504 - L2 LINE L2 -192 3121 2994 365 250 81 128 chr6 35246869 35247070 -147168172 - L1ME3A LINE L1 0 6170 5990 2476 45 0 10 chr6 35247070 35247379 -147167863 + AluY SINE Alu 2 307 -4 365 250 81 128 chr6 35247379 35247521 -147167721 - L1ME3A LINE L1 -180 5990 5843 1002 179 0 0 chr6 35247522 35247684 -147167558 - AluSg/x SINE Alu -17 295 134 1979 140 0 13 chr6 35247684 35247992 -147167250 - AluSx SINE Alu -8 304 1 619 256 52 56 chr6 35247992 35248074 -147167168 - L1ME3A LINE L1 -316 5854 5773 2247 95 0 0 chr6 35248074 35248368 -147166874 - AluSg SINE Alu -16 294 1 619 256 52 56 chr6 35248368 35248554 -147166688 - L1ME3A LINE L1 -397 5773 5587 875 161 0 8 chr6 35248560 35248690 -147166552 + FLAM_C SINE Alu 2 130 -3 311 327 73 0 chr6 35251527 35251637 -147163605 + L1 LINE L1 4362 4479 -1667 2152 97 0 3 chr6 35251651 35251950 -147163292 + AluSx SINE Alu 1 298 -14 514 133 36 0 chr6 35251959 35252042 -147163200 + AluJ/FLAM SINE Alu 2 87 -225 1394 136 66 73 chr6 35252042 35252344 -147162898 + AluJo SINE Alu 13 312 0 246 267 40 10 chr6 35252471 35252572 -147162670 + L1ME2 LINE L1 5846 5949 -215 1831 127 57 13 chr6 35252660 35252959 -147162283 - AluJb SINE Alu 0 312 1 2253 106 0 0 chr6 35252966 35253277 -147161965 - AluSp SINE Alu -2 311 1 2160 93 0 0 chr6 35253287 35253606 -147161636 - AluSc SINE Alu 0 319 1 634 223 41 0 chr6 35253606 35253727 -147161515 - AluJo/FLAM SINE Alu -176 126 1 267 246 144 0 chr6 35253728 35253846 -147161396 - L1ME LINE L1 -283 5887 5753 27 0 0 0 chr6 35253885 35253912 -147161330 + AT_rich Low_complexity Low_complexity 1 27 0 1935 94 0 8 chr6 35254198 35254464 -147160778 - AluSx SINE Alu 0 312 49 1265 141 0 5 chr6 35256101 35256292 -147158950 - AluSq SINE Alu -118 195 6 818 177 0 0 chr6 35256298 35256422 -147158820 - FLAM_C SINE Alu -8 125 2 248 0 0 30 chr6 35256547 35256580 -147158662 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 2128 113 3 0 chr6 35256581 35256873 -147158369 + AluSp SINE Alu 1 293 -20 605 56 0 0 chr6 35256873 35256945 -147158297 - AluSc SINE Alu -181 128 57 1173 170 0 16 chr6 35256945 35257001 -147158241 - AluSx SINE Alu -121 191 136 2036 99 3 78 chr6 35257001 35257198 -147158044 - AluSx SINE Alu -3 309 146 2253 94 0 0 chr6 35257198 35257495 -147157747 - AluSc SINE Alu -12 297 1 2036 99 3 78 chr6 35257495 35257631 -147157611 - AluSx SINE Alu -166 146 1 1173 170 0 16 chr6 35257631 35257768 -147157474 - AluSx SINE Alu -176 136 1 205 290 10 40 chr6 35258938 35259038 -147156204 + GA-rich Low_complexity Low_complexity 2 98 0 444 19 0 0 chr6 35259765 35259818 -147155424 + (CA)n Simple_repeat Simple_repeat 1 53 0 2163 99 0 0 chr6 35260890 35261182 -147154060 + AluY SINE Alu 1 292 -19 1548 161 74 37 chr6 35262604 35263008 -147152234 - Charlie1 DNA MER1_type 0 2761 2343 256 234 0 0 chr6 35263009 35263056 -147152186 - Charlie1 DNA MER1_type -2692 69 23 324 0 0 0 chr6 35263890 35263926 -147151316 + (TG)n Simple_repeat Simple_repeat 2 37 0 1014 140 190 188 chr6 35263931 35264249 -147150993 - L1MD3 LINE L1 -1 7994 7678 1670 176 21 0 chr6 35264249 35264359 -147150883 + AluJb SINE Alu 7 113 -199 230 0 33 0 chr6 35264359 35264389 -147150853 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1670 176 21 0 chr6 35264389 35264568 -147150674 + AluJb SINE Alu 113 302 -10 1589 195 0 20 chr6 35264574 35264877 -147150365 + AluJo SINE Alu 1 297 -15 1014 140 190 188 chr6 35264877 35264905 -147150337 - L1MD3 LINE L1 -321 7674 7648 2208 95 7 0 chr6 35264905 35265201 -147150041 + AluSp SINE Alu 2 299 -14 1014 140 190 188 chr6 35265201 35265405 -147149837 - L1MD3 LINE L1 -347 7648 7348 372 311 71 36 chr6 35267422 35267469 -147147773 + MIR SINE MIR 57 101 -161 2278 92 7 0 chr6 35267469 35267772 -147147470 - AluSx SINE Alu -7 305 1 372 311 71 36 chr6 35267772 35267920 -147147322 + MIR SINE MIR 101 259 -3 2107 101 40 0 chr6 35270510 35270807 -147144435 + AluSc SINE Alu 1 309 0 218 301 129 0 chr6 35270814 35270907 -147144335 - MIR SINE MIR 0 262 158 982 123 0 26 chr6 35270909 35271064 -147144178 - AluJb SINE Alu -10 302 152 224 159 23 0 chr6 35273125 35273169 -147142073 + MIR SINE MIR 31 75 -133 2367 61 3 0 chr6 35273263 35273559 -147141683 - AluY SINE Alu -14 297 1 260 356 166 5 chr6 35273715 35274136 -147141106 + L2 LINE L2 2222 2710 -604 226 258 68 98 chr6 35274321 35274453 -147140789 + L2 LINE L2 2932 3059 -213 2213 89 7 0 chr6 35279242 35279534 -147135708 - AluSx SINE Alu -18 294 1 565 246 74 55 chr6 35280426 35280483 -147134759 - MIR SINE MIR 0 262 208 1661 124 23 12 chr6 35280483 35280741 -147134501 - AluSx SINE Alu -17 295 35 565 246 74 55 chr6 35280741 35280773 -147134469 - MIR SINE MIR -54 208 178 2351 80 7 0 chr6 35280773 35281073 -147134169 + AluSx SINE Alu 2 303 -9 565 246 74 55 chr6 35281073 35281238 -147134004 - MIR SINE MIR -84 178 2 387 0 0 0 chr6 35283740 35283783 -147131459 + (CA)n Simple_repeat Simple_repeat 1 43 0 804 178 70 6 chr6 35284888 35285045 -147130197 - L1M1 LINE L1 -6890 675 509 2261 109 0 0 chr6 35285074 35285387 -147129855 + AluSq SINE Alu 1 313 0 189 0 0 0 chr6 35286986 35287007 -147128235 + (TA)n Simple_repeat Simple_repeat 1 21 0 423 38 0 0 chr6 35287042 35287095 -147128147 + (CA)n Simple_repeat Simple_repeat 2 54 0 252 245 223 0 chr6 35287097 35287191 -147128051 + L2 LINE L2 3199 3313 0 283 200 0 29 chr6 35287454 35287524 -147127718 - MIR SINE MIR -6 256 189 183 100 0 0 chr6 35288511 35288541 -147126701 + (GGA)n Simple_repeat Simple_repeat 2 31 0 2274 95 0 0 chr6 35288615 35288919 -147126323 + AluSx SINE Alu 1 304 -8 253 291 55 9 chr6 35288935 35289045 -147126197 + MIR SINE MIR 92 206 -56 387 0 0 0 chr6 35289273 35289316 -147125926 + (CA)n Simple_repeat Simple_repeat 2 44 0 1976 128 0 17 chr6 35289318 35289614 -147125628 - AluSg SINE Alu -19 291 1 2172 131 45 70 chr6 35289642 35290085 -147125157 - MSTB1 LTR MaLR 0 432 1 220 289 39 70 chr6 35290147 35290177 -147125065 - L2 LINE L2 -1 3312 3283 1903 160 0 3 chr6 35290177 35290489 -147124753 - AluSx SINE Alu -1 311 1 220 289 39 70 chr6 35290489 35290586 -147124656 - L2 LINE L2 -30 3283 3189 181 283 123 28 chr6 35291295 35291401 -147123841 - L3 LINE CR1 -109 1468 1353 427 298 51 6 chr6 35291654 35291812 -147123430 + MIR3 SINE MIR 15 179 -29 2143 95 34 0 chr6 35292763 35293057 -147122185 + AluSx SINE Alu 1 304 -8 2304 81 3 0 chr6 35293694 35293992 -147121250 - AluY SINE Alu -12 299 1 396 0 0 0 chr6 35294007 35294051 -147121191 + (TG)n Simple_repeat Simple_repeat 1 44 0 2178 82 0 0 chr6 35294051 35294331 -147120911 - AluSq SINE Alu -33 280 1 1925 132 0 38 chr6 35294367 35294685 -147120557 - AluSx SINE Alu -6 306 1 2237 70 10 10 chr6 35294731 35295053 -147120189 - AluY SINE Alu 0 311 1 2091 113 10 0 chr6 35295658 35295951 -147119291 + AluSx SINE Alu 1 296 -16 427 327 152 0 chr6 35296020 35296231 -147119011 + L2 LINE L2 2225 2467 -847 2303 74 24 0 chr6 35296278 35296575 -147118667 - AluSq SINE Alu -9 304 1 2269 91 0 0 chr6 35296848 35297146 -147118096 - AluSg SINE Alu -12 298 1 1969 149 0 0 chr6 35297192 35297488 -147117754 + AluSx SINE Alu 1 296 -16 577 122 12 0 chr6 35298220 35298302 -147116940 + AluJ/FLAM SINE Alu 2 84 -228 319 325 73 7 chr6 35298354 35298505 -147116737 + MIR3 SINE MIR 21 181 -27 2053 90 30 3 chr6 35298928 35299228 -147116014 - AluY SINE Alu -3 308 1 2215 97 0 0 chr6 35299286 35299585 -147115657 + AluSx SINE Alu 1 299 -13 844 150 0 0 chr6 35299605 35299732 -147115510 + FLAM_C SINE Alu 1 127 -16 1978 151 0 0 chr6 35299749 35300054 -147115188 + AluSx SINE Alu 1 305 -7 1838 105 124 0 chr6 35300092 35300358 -147114884 + AluSg SINE Alu 2 300 0 2274 98 3 0 chr6 35300373 35300679 -147114563 + AluSc SINE Alu 1 307 -2 2125 99 17 0 chr6 35301666 35301960 -147113282 - AluSx SINE Alu -13 299 1 379 220 38 30 chr6 35301993 35302073 -147113169 - L1MC5 LINE L1 -58 7903 7820 2209 125 0 0 chr6 35302073 35302385 -147112857 - AluSx SINE Alu 0 312 1 379 220 38 30 chr6 35302385 35302436 -147112806 - L1MC5 LINE L1 -141 7820 7771 838 256 11 5 chr6 35302440 35302631 -147112611 - AluJo SINE Alu -5 307 116 924 230 116 90 chr6 35302631 35302678 -147112564 - L1MC5 LINE L1 -194 7767 7723 2289 87 0 7 chr6 35302678 35302987 -147112255 - AluSc SINE Alu -2 307 1 924 230 116 90 chr6 35302987 35303093 -147112149 - L1MC5 LINE L1 -238 7723 7621 1774 162 3 14 chr6 35303093 35303255 -147111987 - AluJo SINE Alu -18 294 135 2220 92 3 10 chr6 35303255 35303593 -147111649 - AluSp SINE Alu 0 313 1 1774 162 3 14 chr6 35303593 35303727 -147111515 - AluJo SINE Alu -177 135 1 924 230 116 90 chr6 35303727 35304091 -147111151 - L1MC5 LINE L1 -340 7621 7268 2126 81 3 11 chr6 35304091 35304403 -147110839 - AluSc SINE Alu 0 310 1 924 230 116 90 chr6 35304403 35304573 -147110669 - L1MC5 LINE L1 -693 7268 7104 2292 74 0 20 chr6 35304573 35304870 -147110372 - AluSc SINE Alu -18 291 1 924 230 116 90 chr6 35304870 35304885 -147110357 - L1MC5 LINE L1 -857 7104 7091 548 140 50 10 chr6 35304885 35304985 -147110257 - U6 snRNA snRNA -3 104 1 924 230 116 90 chr6 35304985 35305051 -147110191 - L1MC5 LINE L1 -870 7091 6973 2182 75 0 0 chr6 35305056 35305375 -147109867 - AluY SINE Alu 0 319 1 260 370 0 43 chr6 35305515 35305597 -147109645 + L2 LINE L2 3102 3177 -95 2082 118 16 3 chr6 35305597 35305902 -147109340 - AluSx SINE Alu -3 309 1 260 370 0 43 chr6 35305902 35305957 -147109285 + L2 LINE L2 3177 3233 -39 189 365 130 0 chr6 35308916 35309031 -147106211 - L2 LINE L2 -4 3268 3139 839 132 28 7 chr6 35312864 35313029 -147102213 - AluJb SINE Alu 0 304 137 2335 83 6 3 chr6 35313088 35313400 -147101842 + AluSq SINE Alu 1 313 0 529 136 239 7 chr6 35314803 35314958 -147100284 + L1ME3 LINE L1 5970 6160 -2 308 266 106 11 chr6 35314965 35315059 -147100183 - L1MC4 LINE L1 -1341 6701 6599 2115 113 0 28 chr6 35315783 35316102 -147099140 + AluSg SINE Alu 1 310 0 789 167 24 0 chr6 35316261 35316387 -147098855 + FLAM_C SINE Alu 2 130 -13 1880 130 10 17 chr6 35316489 35316790 -147098452 + AluSq SINE Alu 1 299 -14 1701 100 30 118 chr6 35318192 35318521 -147096721 + AluSq SINE Alu 1 300 -13 267 79 0 0 chr6 35318532 35318570 -147096672 + (CAGGG)n Simple_repeat Simple_repeat 1 38 0 1818 128 30 37 chr6 35318676 35318974 -147096268 + AluJb SINE Alu 17 312 0 349 234 105 8 chr6 35318984 35319108 -147096134 + MIR SINE MIR 123 258 -4 798 101 70 8 chr6 35319269 35319398 -147095844 + LTR7 LTR ERV1 1 137 -313 307 290 0 30 chr6 35319425 35319525 -147095717 - MIR SINE MIR -115 147 51 2595 39 3 0 chr6 35319643 35319953 -147095289 + AluY SINE Alu 1 311 0 1776 138 0 35 chr6 35320069 35320381 -147094861 - AluJb SINE Alu -9 303 3 2416 67 3 13 chr6 35320489 35320832 -147094410 - AluSp SINE Alu 0 340 1 2049 111 0 0 chr6 35321503 35321803 -147093439 + AluSx SINE Alu 6 305 0 2337 93 3 0 chr6 35321806 35322118 -147093124 + AluSq SINE Alu 1 313 0 554 171 205 0 chr6 35322775 35322892 -147092350 + FLAM_C SINE Alu 2 142 -1 207 182 212 0 chr6 35323051 35323117 -147092125 + MIR SINE MIR 30 109 -99 356 314 43 5 chr6 35323532 35323717 -147091525 + L2 LINE L2 2712 2903 -411 1831 141 16 10 chr6 35326437 35326742 -147088500 - AluJb SINE Alu -5 307 1 665 37 0 0 chr6 35326760 35326841 -147088401 - HY3 scRNA scRNA -20 81 1 438 252 87 8 chr6 35329182 35329309 -147085933 - MER91A DNA MER1_type -13 183 47 1937 142 0 16 chr6 35331158 35331467 -147083775 + AluSx SINE Alu 1 304 -8 634 222 0 0 chr6 35331477 35331594 -147083648 + FLAM_C SINE Alu 2 118 -25 2164 108 0 3 chr6 35331600 35331897 -147083345 - AluSg SINE Alu -14 296 1 980 83 0 8 chr6 35333780 35333913 -147081329 + AluSq/x SINE Alu 1 132 -181 2065 142 3 0 chr6 35333915 35334226 -147081016 + AluSx SINE Alu 1 312 0 2113 128 3 0 chr6 35334327 35334632 -147080610 + AluSx SINE Alu 7 312 0 1351 188 57 25 chr6 35334881 35335189 -147080053 + AluJo SINE Alu 2 302 0 2035 121 7 7 chr6 35335299 35335597 -147079645 + AluSx SINE Alu 1 298 -14 827 113 17 0 chr6 35335631 35335746 -147079496 + FLAM_C SINE Alu 1 117 -26 2244 82 0 25 chr6 35335773 35336090 -147079152 + AluY SINE Alu 1 309 -2 2068 119 16 0 chr6 35336156 35336459 -147078783 + AluSg SINE Alu 1 308 -2 2171 88 0 10 chr6 35336461 35336783 -147078459 + AluY SINE Alu 1 311 0 265 257 29 0 chr6 35336836 35336906 -147078336 + L2 LINE L2 3242 3313 0 760 313 20 85 chr6 35337160 35337597 -147077645 + L1MC4a LINE L1 5255 5719 -2089 1537 65 52 60 chr6 35337597 35337675 -147077567 + MER30 DNA MER1_type 1 78 -152 2144 59 3 46 chr6 35337675 35338011 -147077231 + AluY SINE Alu 1 311 0 1537 65 52 60 chr6 35338011 35338164 -147077078 + MER30 DNA MER1_type 78 230 0 760 313 20 85 chr6 35338164 35338256 -147076986 + L1MC4a LINE L1 5719 5815 -1993 2477 77 0 0 chr6 35338256 35338569 -147076673 + AluSq SINE Alu 1 313 0 760 313 20 85 chr6 35338569 35338886 -147076356 + L1MC4a LINE L1 5815 6047 -1761 1010 143 0 19 chr6 35338939 35339100 -147076142 + AluSg/x SINE Alu 132 289 -21 715 185 8 8 chr6 35339169 35339288 -147075954 + AluJb SINE Alu 3 124 -188 221 0 0 33 chr6 35339288 35339318 -147075924 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1974 52 0 12 chr6 35341212 35341461 -147073781 + AluY SINE Alu 54 299 -12 303 358 47 5 chr6 35341583 35341758 -147073484 - L2 LINE L2 -36 3277 3092 1911 109 59 30 chr6 35341758 35342061 -147073181 + AluSx SINE Alu 1 312 0 303 358 47 5 chr6 35342061 35342075 -147073167 - L2 LINE L2 -221 3092 3080 339 308 62 41 chr6 35342462 35342657 -147072585 - MIR SINE MIR -10 252 54 26 30 0 0 chr6 35343752 35343785 -147071457 + GC_rich Low_complexity Low_complexity 1 33 0 2060 110 7 19 chr6 35344116 35344229 -147071013 + AluSx SINE Alu 1 114 -198 1831 92 4 0 chr6 35344229 35344479 -147070763 + AluSg1 SINE Alu 16 266 -43 2060 110 7 19 chr6 35344479 35344674 -147070568 + AluSx SINE Alu 114 305 -7 1011 95 19 6 chr6 35344674 35344832 -147070410 + AluSg/x SINE Alu 132 291 -19 184 147 0 29 chr6 35344833 35344867 -147070375 + MIR3 SINE MIR 145 177 -31 2073 91 37 7 chr6 35346009 35346307 -147068935 - AluSq SINE Alu -6 307 1 2084 125 10 0 chr6 35346666 35346971 -147068271 - AluSx SINE Alu -4 308 1 523 148 0 0 chr6 35347174 35347255 -147067987 - AluJo SINE Alu -14 298 218 484 179 0 94 chr6 35347252 35347301 -147067941 - AluJo SINE Alu -130 182 130 * 2272 79 0 0 chr6 35347301 35347591 -147067651 - AluY SINE Alu -21 290 1 484 179 0 94 chr6 35347591 35347658 -147067584 - AluJo SINE Alu -182 130 77 628 209 26 0 chr6 35347847 35347962 -147067280 + FLAM_C SINE Alu 1 118 -15 2216 95 0 3 chr6 35347990 35348296 -147066946 + AluSg SINE Alu 1 305 -5 1409 126 5 14 chr6 35348406 35348541 -147066701 + AluSx SINE Alu 1 135 -177 2393 70 3 0 chr6 35348541 35348842 -147066400 + AluY SINE Alu 1 302 -9 1409 126 5 14 chr6 35348842 35348921 -147066321 + AluSx SINE Alu 135 213 -99 25 0 0 0 chr6 35348921 35348946 -147066296 + AT_rich Low_complexity Low_complexity 1 25 0 1089 162 16 0 chr6 35348946 35349131 -147066111 + AluSg/x SINE Alu 118 305 -5 2094 125 0 3 chr6 35349449 35349753 -147065489 + AluSx SINE Alu 1 303 -9 802 145 0 16 chr6 35349802 35349926 -147065316 + AluJo SINE Alu 13 134 -178 2119 129 0 0 chr6 35349936 35350246 -147064996 + AluSg SINE Alu 1 310 0 1951 99 46 30 chr6 35350251 35350554 -147064688 + AluSc SINE Alu 1 308 -1 2035 99 0 7 chr6 35350567 35350877 -147064365 + AluSg SINE Alu 1 308 0 439 169 24 6 chr6 35351183 35351432 -147063810 + AluJo SINE Alu 1 293 -19 2064 125 3 0 chr6 35351520 35351816 -147063426 - AluSx SINE Alu -15 297 1 644 215 0 44 chr6 35351859 35351994 -147063248 + FLAM_C SINE Alu 2 130 -13 2099 126 0 0 chr6 35352022 35352323 -147062919 + AluSg1 SINE Alu 6 306 -3 350 298 118 6 chr6 35352334 35352495 -147062747 + MIR SINE MIR 54 232 -30 806 84 0 0 chr6 35352572 35352679 -147062563 - AluSc SINE Alu -202 107 1 2437 80 0 0 chr6 35352691 35353002 -147062240 - AluY SINE Alu 0 311 1 1675 167 31 14 chr6 35353009 35353296 -147061946 - AluJb SINE Alu -20 292 1 2134 102 7 0 chr6 35353306 35353599 -147061643 - AluSg SINE Alu -15 295 1 889 197 0 0 chr6 35353737 35353889 -147061353 - FRAM SINE Alu -11 155 4 29 0 0 0 chr6 35355172 35355201 -147060041 + AT_rich Low_complexity Low_complexity 1 29 0 2088 113 3 0 chr6 35355239 35355541 -147059701 + AluSx SINE Alu 1 303 -9 1634 125 156 0 chr6 35355542 35355798 -147059444 + AluSq SINE Alu 1 296 -7 788 176 47 7 chr6 35355805 35355953 -147059289 + FRAM SINE Alu 20 173 -3 2142 99 0 0 chr6 35356268 35356552 -147058690 - AluSc SINE Alu -25 284 1 2228 102 10 0 chr6 35356656 35356961 -147058281 + AluSq SINE Alu 1 308 -5 2292 56 0 7 chr6 35357210 35357496 -147057746 + AluY SINE Alu 1 284 -27 387 0 0 0 chr6 35357496 35357539 -147057703 + (CA)n Simple_repeat Simple_repeat 2 44 0 1549 167 7 20 chr6 35359976 35360126 -147055116 - AluJo SINE Alu -16 296 150 1980 76 52 31 chr6 35360126 35360416 -147054826 - AluSx SINE Alu -16 296 1 1549 167 7 20 chr6 35360416 35360565 -147054677 - AluJo SINE Alu -162 150 1 1781 173 90 27 chr6 35360574 35360763 -147054479 - L1MB2 LINE L1 -2 6169 5993 1489 191 10 13 chr6 35360763 35361066 -147054176 - AluJb SINE Alu -10 302 1 1781 173 90 27 chr6 35361066 35361249 -147053993 - L1MB2 LINE L1 -178 5993 5758 1991 129 0 13 chr6 35361249 35361551 -147053691 - AluSx SINE Alu -14 298 1 1781 173 90 27 chr6 35361551 35361657 -147053585 - L1MB2 LINE L1 -413 5758 5660 1535 65 0 56 chr6 35362070 35362301 -147052941 + AluY SINE Alu 1 218 -93 1359 77 0 0 chr6 35362301 35362482 -147052760 + AluY SINE Alu 131 311 0 1936 131 24 0 chr6 35366069 35366367 -147048875 + AluSx SINE Alu 1 305 -7 2005 94 3 49 chr6 35366970 35367278 -147047964 + AluSx SINE Alu 1 294 -18 2112 110 7 3 chr6 35367285 35367585 -147047657 + AluSq SINE Alu 1 301 -12 274 157 78 0 chr6 35367595 35367646 -147047596 + L1MB5 LINE L1 6042 6096 -78 692 113 0 0 chr6 35367646 35367743 -147047499 + AluJb SINE Alu 211 307 -5 2373 75 0 0 chr6 35368317 35368622 -147046620 + AluSg SINE Alu 1 305 -5 1058 83 89 0 chr6 35369409 35369566 -147045676 + AluJb SINE Alu 136 306 -6 212 283 0 0 chr6 35370032 35370085 -147045157 + C-rich Low_complexity Low_complexity 1 53 0 1664 154 32 4 chr6 35370943 35371222 -147044020 - AluJo SINE Alu -19 293 7 2184 114 3 0 chr6 35371531 35371838 -147043404 - AluSx SINE Alu -4 308 1 2325 97 3 0 chr6 35372219 35372530 -147042712 + AluSx SINE Alu 1 312 0 2050 79 3 59 chr6 35372860 35373164 -147042078 - AluSp SINE Alu -20 293 7 210 71 0 0 chr6 35373697 35373725 -147041517 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 124 5 0 chr6 35373926 35374143 -147041099 + AluSg/x SINE Alu 84 301 -9 781 62 0 0 chr6 35374146 35374243 -147040999 + AluSg SINE Alu 2 98 -212 1910 66 8 0 chr6 35374243 35374485 -147040757 + AluSg SINE Alu 54 297 -13 246 32 0 0 chr6 35378091 35378122 -147037120 + (T)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr6 35378158 35378196 -147037046 + AT_rich Low_complexity Low_complexity 1 38 0 1787 74 0 29 chr6 35378567 35378811 -147036431 - AluY SINE Alu -11 300 64 882 133 172 119 chr6 35378819 35378948 -147036294 + L1MA7 LINE L1 5917 6038 -253 1685 165 39 0 chr6 35378948 35379233 -147036009 - AluJo SINE Alu -16 296 1 882 133 172 119 chr6 35379233 35379457 -147035785 + L1MA7 LINE L1 6038 6289 -2 815 174 0 0 chr6 35379477 35379615 -147035627 + AluSq/x SINE Alu 1 138 -174 1777 131 52 17 chr6 35379616 35379906 -147035336 + AluSx SINE Alu 1 300 -12 2308 91 0 7 chr6 35380071 35380380 -147034862 - AluSq SINE Alu -6 307 1 2524 55 3 0 chr6 35380429 35380740 -147034502 + AluSp SINE Alu 1 312 -1 891 173 68 0 chr6 35380825 35380987 -147034255 - AluJb SINE Alu -23 289 117 415 284 93 12 chr6 35381032 35381194 -147034048 + MER5B DNA MER1_type 4 178 0 2065 117 3 16 chr6 35381199 35381515 -147033727 + AluSx SINE Alu 1 312 0 2033 125 0 3 chr6 35381528 35381825 -147033417 + AluSx SINE Alu 1 296 -16 2324 45 21 0 chr6 35381930 35382218 -147033024 - AluY SINE Alu -17 294 1 638 161 36 51 chr6 35382218 35382355 -147032887 - AluJb SINE Alu -176 136 2 23 0 0 0 chr6 35382510 35382533 -147032709 + GC_rich Low_complexity Low_complexity 1 23 0 2051 88 24 3 chr6 35383501 35383795 -147031447 - AluY SINE Alu -11 300 1 618 202 34 0 chr6 35383795 35383914 -147031328 - AluJo/FRAM SINE Alu -10 302 180 1457 104 46 8 chr6 35383916 35384156 -147031086 - AluSc SINE Alu -5 304 56 1170 201 148 11 chr6 35384225 35384488 -147030754 - AluJb SINE Alu -1 301 3 768 121 14 71 chr6 35384616 35384757 -147030485 - AluSq/x SINE Alu -178 134 2 1287 142 93 19 chr6 35385552 35385863 -147029379 - MSTA LTR MaLR -64 364 1 231 127 73 18 chr6 35385863 35385917 -147029325 - AluSq/x SINE Alu -191 112 56 1801 133 31 0 chr6 35385936 35386222 -147029020 - AluSg SINE Alu -15 295 1 1553 134 161 8 chr6 35386233 35386494 -147028748 - AluSx SINE Alu 0 302 2 1258 155 9 122 chr6 35386496 35386685 -147028557 - AluJb SINE Alu -14 298 162 1957 103 7 47 chr6 35386685 35386986 -147028256 + AluSx SINE Alu 5 293 -19 1258 155 9 122 chr6 35386986 35387132 -147028110 - AluJb SINE Alu -150 162 1 1839 154 83 0 chr6 35387132 35387457 -147027785 - L1PA16 LINE L1 -11 6155 5804 1857 119 20 24 chr6 35387759 35388054 -147027188 + AluSc SINE Alu 1 294 -15 1848 109 0 66 chr6 35388196 35388499 -147026743 - AluSq SINE Alu -30 283 1 1053 194 75 4 chr6 35388553 35388780 -147026462 - AluSx SINE Alu -17 295 53 1702 141 10 21 chr6 35388986 35389276 -147025966 - AluY SINE Alu -18 293 7 1891 109 11 4 chr6 35389356 35389630 -147025612 - AluSc SINE Alu -32 277 2 1985 79 48 7 chr6 35389631 35389922 -147025320 - AluY SINE Alu -8 303 1 1735 118 45 21 chr6 35389922 35390211 -147025031 - AluSp SINE Alu -17 296 1 1681 113 48 61 chr6 35390299 35390430 -147024812 + AluSx SINE Alu 1 132 -180 2201 48 4 0 chr6 35390430 35390699 -147024543 + AluY SINE Alu 14 283 -28 2079 107 0 14 chr6 35390703 35390993 -147024249 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 35390993 35391014 -147024228 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1681 113 48 61 chr6 35391014 35391169 -147024073 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 35391301 35391416 -147023826 - AluSq/x SINE Alu -192 121 1 1439 181 13 43 chr6 35391421 35391578 -147023664 - AluJb SINE Alu -18 294 134 2260 101 0 0 chr6 35391578 35391874 -147023368 - AluY SINE Alu -15 296 1 2332 64 7 3 chr6 35391874 35392170 -147023072 - AluY SINE Alu -14 297 1 1439 181 13 43 chr6 35392170 35392314 -147022928 - AluJb SINE Alu -176 136 1 1552 170 17 17 chr6 35392343 35392631 -147022611 + AluJb SINE Alu 7 294 -18 618 241 0 0 chr6 35392634 35392750 -147022492 - FLAM_A SINE Alu -17 116 1 2486 49 10 0 chr6 35392949 35393255 -147021987 - AluY SINE Alu -2 309 1 1459 256 35 14 chr6 35393507 35393933 -147021309 + L2 LINE L2 2414 2848 -466 448 102 0 0 chr6 35393933 35393992 -147021250 + AluSq/x SINE Alu 62 120 -192 1985 146 0 0 chr6 35394203 35394498 -147020744 + AluSx SINE Alu 1 295 -17 937 126 0 15 chr6 35394659 35394794 -147020448 + FLAM_C SINE Alu 1 133 0 300 267 137 7 chr6 35394807 35394953 -147020289 + L1MEd LINE L1 951 1115 -5004 2099 108 3 3 chr6 35394965 35395260 -147019982 - AluSg SINE Alu -15 295 1 437 176 0 24 chr6 35395455 35395540 -147019702 - AluJb SINE Alu -32 280 198 180 0 0 0 chr6 35395547 35395567 -147019675 + (T)n Simple_repeat Simple_repeat 1 20 0 1405 181 51 14 chr6 35395980 35396272 -147018970 + AluJo SINE Alu 1 303 -9 283 348 22 0 chr6 35396296 35396477 -147018765 - L1MC4 LINE L1 -126 7916 7732 1731 159 4 0 chr6 35396485 35396762 -147018480 + AluJo SINE Alu 13 290 -22 2205 97 0 7 chr6 35396772 35397072 -147018170 + AluSx SINE Alu 5 302 -10 2203 93 3 10 chr6 35397182 35397495 -147017747 - AluY SINE Alu 0 311 1 1557 188 3 26 chr6 35397539 35397848 -147017394 - AluJb SINE Alu -10 302 1 2181 79 16 7 chr6 35397851 35398154 -147017088 - AluSq SINE Alu -7 306 1 1052 76 0 0 chr6 35398157 35398289 -147016953 - AluSp SINE Alu -181 132 1 1396 98 0 0 chr6 35398289 35398472 -147016770 - AluSc SINE Alu -12 297 115 1531 99 0 22 chr6 35398472 35398694 -147016548 + AluSg/x SINE Alu 79 295 -15 233 29 29 0 chr6 35398748 35398782 -147016460 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1812 128 3 35 chr6 35398861 35399151 -147016091 + AluJb SINE Alu 18 298 -14 1704 108 140 35 chr6 35399482 35399824 -147015418 + LTR24B LTR ERV1 4 381 -195 4412 127 51 32 chr6 35399825 35401024 -147014218 + pTR5 LTR ERV1 743 2267 -171 615 209 26 40 chr6 35401025 35401218 -147014024 + LTR24B LTR ERV1 374 595 -40 6756 58 5 43 chr6 35401225 35402217 -147013025 - SVA Other Other 0 1386 433 1203 71 3 45 chr6 35402230 35402579 -147012663 - SVA Other Other -520 866 635 5272 72 35 55 chr6 35402608 35403467 -147011775 - SVA Other Other -520 866 25 554 233 15 53 chr6 35403499 35403632 -147011610 + FLAM_A SINE Alu 1 128 -5 1878 149 7 0 chr6 35403647 35403943 -147011299 - AluSx SINE Alu -14 298 1 2036 128 0 3 chr6 35403996 35404292 -147010950 - AluSx SINE Alu -17 295 1 34 24 0 0 chr6 35404302 35404343 -147010899 + AT_rich Low_complexity Low_complexity 1 41 0 2203 90 0 7 chr6 35404347 35404647 -147010595 + AluSx SINE Alu 1 298 -14 262 209 0 0 chr6 35404649 35404692 -147010550 - MER66B LTR ERV1 -146 340 298 2206 105 0 0 chr6 35404772 35405067 -147010175 - AluSg SINE Alu -15 295 1 365 213 88 17 chr6 35405193 35405297 -147009945 - MER5A DNA MER1_type -3 186 69 1214 218 66 3 chr6 35405331 35405620 -147009622 - AluJo SINE Alu -5 307 1 2011 124 3 0 chr6 35405960 35406251 -147008991 - AluSg SINE Alu -18 292 1 802 194 0 7 chr6 35406278 35406417 -147008825 + AluJo SINE Alu 2 139 -173 2271 90 0 13 chr6 35406421 35406732 -147008510 + AluSx SINE Alu 6 312 0 1768 160 3 22 chr6 35406821 35407133 -147008109 + AluJb SINE Alu 1 306 -6 620 279 76 0 chr6 35408896 35409068 -147006174 + MER91A DNA MER1_type 12 196 0 702 263 13 36 chr6 35409675 35409899 -147005343 + L2 LINE L2 3092 3310 -3 209 276 0 26 chr6 35410528 35410604 -147004638 + GA-rich Low_complexity Low_complexity 2 75 0 2194 73 27 3 chr6 35411312 35411613 -147003629 - AluSx SINE Alu -4 308 1 340 298 139 29 chr6 35411873 35412071 -147003171 + MIR SINE MIR 15 228 -34 2194 83 10 13 chr6 35412152 35412464 -147002778 - AluSx SINE Alu -1 311 1 401 219 219 0 chr6 35413227 35413332 -147001910 - MER45A DNA AcHobo -4 174 47 853 251 40 52 chr6 35414510 35414703 -147000539 + L1MC5 LINE L1 7609 7798 -163 2232 95 0 3 chr6 35414703 35414998 -147000244 + AluSq SINE Alu 4 297 -16 853 251 40 52 chr6 35414998 35415131 -147000111 + L1MC5 LINE L1 7798 7931 -30 1751 128 7 56 chr6 35415178 35415482 -146999760 - AluSg SINE Alu -21 289 1 1562 188 34 7 chr6 35415543 35415841 -146999401 + AluJb SINE Alu 7 312 0 197 171 0 0 chr6 35415870 35415905 -146999337 + L2 LINE L2 3221 3255 -17 2174 86 21 0 chr6 35415914 35416204 -146999038 - AluSx SINE Alu -13 299 4 554 252 7 14 chr6 35416446 35416589 -146998653 - MIR SINE MIR 0 262 121 1398 173 7 75 chr6 35416592 35416920 -146998322 + AluJo SINE Alu 9 316 0 291 270 111 0 chr6 35417051 35417177 -146998065 + MIR3 SINE MIR 7 146 -62 312 286 36 18 chr6 35417445 35417557 -146997685 + MER91A DNA MER1_type 64 177 -19 2469 38 0 0 chr6 35417790 35418082 -146997160 + AluY SINE Alu 1 292 -19 264 244 126 50 chr6 35418123 35418242 -146997000 + L2 LINE L2 3186 3313 0 443 185 0 0 chr6 35418470 35418551 -146996691 - MIR SINE MIR -69 193 113 199 239 106 18 chr6 35420096 35420209 -146995033 + L2 LINE L2 2934 3056 -257 1789 173 0 0 chr6 35420300 35420620 -146994622 - AluJo SINE Alu 0 320 1 1006 155 0 13 chr6 35420622 35420777 -146994465 - FRAM SINE Alu -9 157 5 285 365 10 0 chr6 35420779 35420883 -146994359 - MIR SINE MIR -109 153 49 2159 87 10 0 chr6 35420970 35421259 -146993983 - AluSg SINE Alu -18 292 1 2067 102 0 40 chr6 35421264 35421567 -146993675 - AluSx SINE Alu -21 291 1 879 168 0 0 chr6 35421602 35421733 -146993509 + FLAM_C SINE Alu 3 133 0 278 305 11 0 chr6 35421763 35421858 -146993384 - L1ME4a LINE L1 -71 6050 5955 1958 75 3 129 chr6 35421877 35422210 -146993032 + AluSg SINE Alu 1 291 -9 193 186 267 12 chr6 35422279 35422365 -146992877 + L2 LINE L2 3182 3289 -24 397 263 132 0 chr6 35422410 35422524 -146992718 + MIR3 SINE MIR 43 171 -37 332 256 150 44 chr6 35423347 35423527 -146991715 + MIR SINE MIR 64 262 0 * 353 308 24 76 chr6 35423469 35423719 -146991523 - MIR SINE MIR -24 238 2 1245 120 0 5 chr6 35424342 35424526 -146990716 - AluSg/x SINE Alu -1 311 129 1285 159 45 0 chr6 35424551 35424771 -146990471 + AluJo SINE Alu 1 230 -82 277 284 128 27 chr6 35424841 35424989 -146990253 - L1ME3A LINE L1 -32 6138 5976 1968 117 10 3 chr6 35427388 35427679 -146987563 - AluSq SINE Alu -17 296 4 720 243 35 0 chr6 35428484 35428653 -146986589 + MER5A DNA MER1_type 15 189 0 2407 86 0 3 chr6 35429906 35430220 -146985022 + AluSq SINE Alu 1 313 0 450 228 77 15 chr6 35430343 35430489 -146984753 - MIR SINE MIR -61 147 10 257 220 0 17 chr6 35430489 35430548 -146984694 + G-rich Low_complexity Low_complexity 4 61 0 359 315 204 0 chr6 35431690 35431852 -146983390 - MER91A DNA MER1_type 0 196 2 869 208 33 6 chr6 35432146 35432329 -146982913 - MER53 DNA DNA -1 188 1 537 221 0 18 chr6 35433166 35433279 -146981963 + MIR SINE MIR 41 151 -111 2305 60 10 3 chr6 35433280 35433579 -146981663 + AluY SINE Alu 1 301 -10 1002 191 12 0 chr6 35433657 35433825 -146981417 + FAM SINE Alu 1 170 -5 681 254 90 90 chr6 35433827 35433946 -146981296 + L1MC5 LINE L1 6613 6731 -1230 1867 83 0 0 chr6 35433946 35434187 -146981055 + AluSg SINE Alu 56 296 -14 681 254 90 90 chr6 35434187 35434501 -146980741 + L1MC5 LINE L1 6730 7046 -915 187 333 35 11 chr6 35435246 35435333 -146979909 + L2 LINE L2 3021 3109 -163 * 247 286 18 45 chr6 35435330 35435442 -146979800 + MIR SINE MIR 10 118 -144 377 331 70 0 chr6 35435507 35435649 -146979593 + L2 LINE L2 3118 3269 -3 444 161 0 0 chr6 35437573 35437654 -146977588 + CT-rich Low_complexity Low_complexity 2 82 0 269 280 93 47 chr6 35437850 35438000 -146977242 + L1ME3A LINE L1 5794 5950 -220 245 286 27 54 chr6 35438037 35438184 -146977058 + L1MD3 LINE L1 7416 7558 -437 1121 231 78 106 chr6 35438187 35438345 -146976897 + L1MC5 LINE L1 7312 7473 -488 1949 118 31 0 chr6 35438345 35438633 -146976609 - AluSq SINE Alu -14 299 3 1121 231 78 106 chr6 35438633 35438668 -146976574 + L1MC5 LINE L1 7473 7507 -454 2147 107 0 10 chr6 35438668 35438988 -146976254 + AluSg SINE Alu 1 310 0 1121 231 78 106 chr6 35438988 35439031 -146976211 + L1MC5 LINE L1 7507 7550 -411 2269 81 3 10 chr6 35439031 35439329 -146975913 - AluSp SINE Alu -17 296 1 1121 231 78 106 chr6 35439329 35439721 -146975521 + L1MC5 LINE L1 7550 7924 -37 2059 104 0 17 chr6 35440044 35440341 -146974901 + AluSx SINE Alu 1 292 -20 1523 180 42 61 chr6 35441234 35441414 -146973828 + L1MB3 LINE L1 5654 5836 -347 1385 171 49 31 chr6 35441414 35441700 -146973542 - AluJo SINE Alu -21 291 1 1523 180 42 61 chr6 35441700 35442053 -146973189 + L1MB3 LINE L1 5836 6124 -59 2101 104 3 23 chr6 35442053 35442226 -146973016 - AluSx SINE Alu -9 303 137 2089 105 10 10 chr6 35442226 35442531 -146972711 - AluSq SINE Alu -8 305 1 2101 104 3 23 chr6 35442531 35442666 -146972576 - AluSx SINE Alu -175 137 1 1523 180 42 61 chr6 35442666 35442698 -146972544 + L1MB3 LINE L1 6124 6155 -28 383 100 0 146 chr6 35442727 35442762 -146972480 + MER44D DNA MER2_type 337 375 -2112 1388 116 160 0 chr6 35442762 35442894 -146972348 - AluSx SINE Alu -22 290 180 180 0 0 0 chr6 35442894 35442914 -146972328 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1388 116 160 0 chr6 35442914 35443031 -146972211 - AluSx SINE Alu -132 180 1 383 100 0 146 chr6 35443031 35443105 -146972137 + MER44D DNA MER2_type 375 485 -120 1291 152 100 15 chr6 35443166 35443435 -146971807 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 35443450 35443479 -146971763 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 35443488 35443537 -146971705 - MER66B LTR ERV1 -144 342 292 792 185 15 0 chr6 35443598 35443728 -146971514 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 35443735 35443880 -146971362 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 35444108 35444265 -146970977 + L2 LINE L2 3145 3313 0 27 29 0 0 chr6 35445315 35445349 -146969893 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr6 35445610 35445633 -146969609 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 35445667 35445688 -146969554 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 35445727 35445768 -146969474 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 35445775 35445806 -146969436 + GC_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr6 35448437 35448481 -146966761 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr6 35450043 35450065 -146965177 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 35450118 35450145 -146965097 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 35450456 35450478 -146964764 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 35451436 35451733 -146963509 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 35452056 35452116 -146963126 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 35452162 35452204 -146963038 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 35452379 35452409 -146962833 + AT_rich Low_complexity Low_complexity 1 30 0 2105 114 0 0 chr6 35452409 35452698 -146962544 - AluSq SINE Alu -24 289 1 1724 162 3 17 chr6 35453237 35453534 -146961708 + AluJo SINE Alu 1 293 -19 855 144 0 8 chr6 35453569 35453701 -146961541 + FLAM_C SINE Alu 1 131 -2 191 305 211 0 chr6 35453788 35453883 -146961359 + MIR3 SINE MIR 89 203 -5 2181 119 0 10 chr6 35454934 35455246 -146959996 + AluSq SINE Alu 1 309 -4 1290 178 73 7 chr6 35455399 35455685 -146959557 + AluJb SINE Alu 1 305 -7 376 175 0 0 chr6 35455691 35455754 -146959488 - AluJb SINE Alu -35 267 205 1559 161 3 42 chr6 35455759 35455921 -146959321 - AluJb SINE Alu -13 299 153 2356 82 7 3 chr6 35455921 35456227 -146959015 - AluSq SINE Alu -6 307 1 1559 161 3 42 chr6 35456227 35456375 -146958867 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 35456375 35456451 -146958791 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 35456451 35456759 -146958483 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 35456759 35457073 -146958169 + Tigger1 DNA MER2_type 2087 2414 -4 473 191 127 4 chr6 35457138 35457374 -146957868 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 35457380 35457660 -146957582 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 35457685 35457821 -146957421 - FLAM_C SINE Alu -1 132 5 1488 152 7 24 chr6 35457827 35457954 -146957288 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 35457954 35458260 -146956982 - AluSg SINE Alu -4 306 1 1488 152 7 24 chr6 35458260 35458422 -146956820 - L1M3 LINE L1 -701 5479 5323 1235 133 39 10 chr6 35458422 35458625 -146956617 - AluJb SINE Alu -17 295 87 805 208 110 25 chr6 35458625 35458779 -146956463 + Charlie2 DNA MER1_type 2475 2615 -247 2282 99 0 3 chr6 35458779 35459092 -146956150 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 35459099 35459420 -146955822 + AluSx SINE Alu 1 320 0 805 208 110 25 chr6 35459420 35459612 -146955630 + Charlie2 DNA MER1_type 2620 2860 -2 232 114 23 0 chr6 35459664 35459708 -146955534 - MER5A DNA MER1_type -84 105 61 2249 93 36 0 chr6 35459711 35460012 -146955230 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 35460020 35460156 -146955086 - FLAM_C SINE Alu 0 133 1 330 171 29 0 chr6 35460156 35460226 -146955016 - MER5A DNA MER1_type -114 75 4 326 278 11 0 chr6 35460235 35460325 -146954917 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 35460373 35460604 -146954638 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 35460642 35460952 -146954290 + AluSx SINE Alu 1 310 -2 911 154 0 0 chr6 35460998 35461141 -146954101 + FLAM_C SINE Alu 1 143 0 700 155 115 135 chr6 35461142 35461200 -146954042 + MLT2C2 LTR ERVL 17 75 -389 614 231 15 15 chr6 35461200 35461330 -146953912 - FLAM_A SINE Alu -3 130 1 700 155 115 135 chr6 35461330 35461381 -146953861 + MLT2C2 LTR ERVL 75 125 -339 1953 136 0 32 chr6 35461381 35461697 -146953545 + AluSq SINE Alu 1 306 -7 700 155 115 135 chr6 35461697 35461735 -146953507 + MLT2C2 LTR ERVL 125 162 -302 2058 107 24 0 chr6 35461735 35462025 -146953217 - AluSg SINE Alu -13 297 1 1627 118 81 18 chr6 35462026 35462298 -146952944 - AluSc SINE Alu -20 289 1 700 155 115 135 chr6 35462298 35462398 -146952844 + MLT2C2 LTR ERVL 161 263 -201 2405 74 0 0 chr6 35462398 35462695 -146952547 + AluSg SINE Alu 1 297 -13 2298 46 0 4 chr6 35462718 35462998 -146952244 + AluY SINE Alu 1 279 -32 219 36 0 0 chr6 35462998 35463026 -146952216 + (CAA)n Simple_repeat Simple_repeat 3 30 0 184 308 241 8 chr6 35463150 35463283 -146951959 + L2 LINE L2 2579 2742 -572 1094 238 102 56 chr6 35463595 35463986 -146951256 - MLT1I LTR MaLR 0 409 1 498 351 51 16 chr6 35464219 35464364 -146950878 - LTR16C LTR ERVL -2 489 351 2320 96 0 0 chr6 35464364 35464667 -146950575 + AluSx SINE Alu 1 303 -9 498 351 51 16 chr6 35464667 35464834 -146950408 - LTR16C LTR ERVL -140 351 166 701 146 24 24 chr6 35464853 35464976 -146950266 + AluSg/x SINE Alu 181 303 -6 2225 105 3 0 chr6 35464976 35465282 -146949960 + AluSx SINE Alu 1 307 -5 1342 157 58 14 chr6 35465378 35465704 -146949538 + L1PA16 LINE L1 5805 6174 0 2251 97 0 0 chr6 35465708 35466008 -146949234 + AluSx SINE Alu 1 300 -12 1448 166 11 37 chr6 35466108 35466379 -146948863 + AluJo SINE Alu 29 292 -20 1627 175 7 36 chr6 35466389 35466698 -146948544 + AluJo SINE Alu 1 300 -12 2056 91 56 7 chr6 35466702 35466989 -146948253 + AluSg1 SINE Alu 1 301 -8 347 204 66 105 chr6 35467008 35467160 -146948082 + L1MC5 LINE L1 7794 7939 -22 2124 102 0 0 chr6 35467205 35467529 -146947713 - AluSq SINE Alu 0 324 1 304 295 83 68 chr6 35467611 35468008 -146947234 - L1MC4a LINE L1 -1741 6067 5665 1057 237 4 4 chr6 35469640 35469868 -146945374 + MIR SINE MIR 2 229 -33 1194 231 165 18 chr6 35469894 35470293 -146944949 - LTR16C LTR ERVL -15 476 19 2196 111 0 13 chr6 35470644 35470960 -146944282 + AluSx SINE Alu 1 312 0 2349 67 3 22 chr6 35471557 35471873 -146943369 - AluY SINE Alu -1 310 1 2387 59 0 3 chr6 35471881 35472184 -146943058 - AluY SINE Alu -9 302 1 464 301 174 17 chr6 35472335 35472571 -146942671 - MLT1J LTR MaLR 0 511 239 954 233 12 33 chr6 35472880 35473125 -146942117 + MLT1H LTR MaLR 14 253 -296 740 257 93 51 chr6 35473305 35473379 -146941863 - MLT1I LTR MaLR -55 354 285 2288 91 0 0 chr6 35473379 35473677 -146941565 - AluSx SINE Alu -14 298 1 740 257 93 51 chr6 35473677 35473839 -146941403 - MLT1I LTR MaLR -124 285 108 1324 205 116 32 chr6 35473929 35474334 -146940908 - MLT1J LTR MaLR -72 439 1 2235 91 7 3 chr6 35474418 35474716 -146940526 - AluSq SINE Alu -14 299 1 730 158 0 0 chr6 35474716 35474830 -146940412 - AluSg/x SINE Alu -9 300 187 248 246 87 0 chr6 35476621 35476690 -146938552 + MER116 DNA Mariner 6 80 0 539 302 88 0 chr6 35477322 35477527 -146937715 + MIR SINE MIR 3 225 -37 2215 104 3 0 chr6 35477527 35477825 -146937417 + AluSg SINE Alu 5 303 -7 2022 85 44 0 chr6 35477826 35478130 -146937112 + AluSx SINE Alu 2 317 0 2163 101 3 3 chr6 35478164 35478461 -146936781 - AluSp SINE Alu -16 297 1 835 188 0 0 chr6 35478461 35478594 -146936648 - FLAM_A SINE Alu 0 133 1 2273 231 96 25 chr6 35478918 35479342 -146935900 - L1ME3 LINE L1 0 6162 5667 6870 58 9 31 chr6 35479342 35480989 -146934253 - SVA Other Other -723 1386 9 2273 231 96 25 chr6 35480989 35481247 -146933995 - L1ME3 LINE L1 -495 5667 5429 194 319 59 25 chr6 35482282 35482401 -146932841 - L2 LINE L2 0 3313 3191 27 49 0 0 chr6 35482474 35482515 -146932727 + AT_rich Low_complexity Low_complexity 1 41 0 2016 120 7 0 chr6 35482563 35482882 -146932360 + AluSq SINE Alu 1 321 0 255 344 74 0 chr6 35483112 35483234 -146932008 + MIR SINE MIR 53 183 -79 1870 107 56 0 chr6 35483292 35483591 -146931651 - AluSx SINE Alu 0 314 1 2132 122 0 3 chr6 35484328 35484639 -146930603 - AluSg SINE Alu 0 310 1 2086 103 27 3 chr6 35484761 35485053 -146930189 + AluSx SINE Alu 1 299 -13 195 368 0 0 chr6 35485323 35485380 -146929862 + MIR SINE MIR 16 72 -136 952 121 8 0 chr6 35485398 35485530 -146929712 - FLAM_C SINE Alu 0 133 1 2081 120 0 23 chr6 35485557 35485866 -146929376 + AluSx SINE Alu 7 308 -4 368 346 132 0 chr6 35486061 35486266 -146928976 + MIR SINE MIR 20 251 -11 501 84 0 0 chr6 35486269 35486340 -146928902 + (TA)n Simple_repeat Simple_repeat 2 72 0 1861 136 0 46 chr6 35486340 35486495 -146928747 - AluSx SINE Alu -24 288 152 2236 85 24 0 chr6 35486495 35486789 -146928453 - AluSp SINE Alu -12 301 1 1861 136 0 46 chr6 35486789 35486935 -146928307 - AluSx SINE Alu -160 152 1 195 42 0 0 chr6 35487344 35487368 -146927874 + (T)n Simple_repeat Simple_repeat 1 24 0 630 272 0 15 chr6 35487471 35487607 -146927635 - AluJo SINE Alu -59 253 120 1935 130 3 23 chr6 35487615 35487916 -146927326 - AluSx SINE Alu -17 295 1 31 0 0 0 chr6 35487916 35487947 -146927295 + AT_rich Low_complexity Low_complexity 1 31 0 263 314 141 0 chr6 35488002 35488123 -146927119 + MIR SINE MIR 121 258 -4 189 107 0 0 chr6 35488134 35488162 -146927080 + (CAT)n Simple_repeat Simple_repeat 3 30 0 795 237 75 12 chr6 35488999 35489259 -146925983 - MLT1C LTR MaLR -4 589 187 1835 147 0 43 chr6 35489318 35489644 -146925598 - AluSx SINE Alu 0 312 1 2417 74 3 0 chr6 35489653 35489962 -146925280 - AluSg SINE Alu 0 310 1 739 83 0 0 chr6 35489966 35490062 -146925180 - AluSp/q SINE Alu -12 301 206 764 146 70 6 chr6 35490098 35490269 -146924973 - MLT1C LTR MaLR -285 182 1 527 139 35 0 chr6 35490328 35490414 -146924828 - AluJb SINE Alu -201 111 23 862 221 39 54 chr6 35490428 35490728 -146924514 - L2 LINE L2 -239 3074 2784 2179 114 3 0 chr6 35492224 35492523 -146922719 - AluSx SINE Alu -8 304 5 338 258 129 59 chr6 35497565 35497751 -146917491 - MIR3 SINE MIR -9 199 1 310 316 119 26 chr6 35501109 35501378 -146913864 + L2 LINE L2 2122 2415 -899 404 316 0 0 chr6 35502417 35502569 -146912673 + (TCTCTG)n Simple_repeat Simple_repeat 5 156 0 1810 160 0 35 chr6 35503288 35503601 -146911641 - AluJb SINE Alu -2 310 9 1997 130 0 48 chr6 35503619 35503786 -146911456 - AluSx SINE Alu -12 300 153 2411 45 10 0 chr6 35503786 35504078 -146911164 - AluY SINE Alu -16 295 1 1997 130 0 48 chr6 35504078 35504225 -146911017 - AluSx SINE Alu -159 153 1 223 337 102 0 chr6 35504355 35504453 -146910789 - MIR3 SINE MIR -6 202 95 202 311 84 42 chr6 35507595 35507714 -146907528 + MER5B DNA MER1_type 1 124 -54 319 318 11 0 chr6 35508644 35508732 -146906510 - MER91B DNA MER1_type -2 188 100 360 336 0 31 chr6 35508732 35508860 -146906382 - MER91B DNA MER1_type -55 135 12 504 306 0 0 chr6 35512290 35512411 -146902831 + MIR SINE MIR 14 134 -128 290 301 87 57 chr6 35512412 35512687 -146902555 + L1ME3A LINE L1 5316 5604 -562 2288 100 0 3 chr6 35512687 35512997 -146902245 + AluSc SINE Alu 1 309 0 290 301 87 57 chr6 35512997 35513053 -146902189 + L1ME3A LINE L1 5604 5657 -509 336 360 88 18 chr6 35513063 35513336 -146901906 + L1ME3A LINE L1 5671 5970 -204 252 327 18 36 chr6 35513449 35513559 -146901683 + MIR SINE MIR 130 237 -25 1700 187 0 31 chr6 35513934 35514255 -146900987 - AluJb SINE Alu -1 311 1 291 239 214 34 chr6 35514353 35514470 -146900772 - MIR3 SINE MIR -16 192 55 333 346 13 38 chr6 35521614 35521773 -146893469 + MER5A DNA MER1_type 35 189 0 1931 132 17 0 chr6 35521850 35522145 -146893097 + AluJb SINE Alu 1 300 -12 1302 203 0 114 chr6 35522282 35522632 -146892610 + AluSx SINE Alu 1 310 -2 2117 115 0 7 chr6 35523041 35523346 -146891896 - AluSc SINE Alu -6 303 1 749 71 20 0 chr6 35523349 35523448 -146891794 - AluSq/x SINE Alu -180 132 32 5696 76 25 40 chr6 35523501 35524884 -146890358 - SVA Other Other -518 1009 52 1933 117 13 30 chr6 35525024 35525184 -146890058 - AluSx SINE Alu -18 294 140 2250 79 3 26 chr6 35525184 35525489 -146889753 - AluY SINE Alu -13 298 1 1933 117 13 30 chr6 35525489 35525627 -146889615 - AluSx SINE Alu -172 140 1 2000 135 20 0 chr6 35525631 35525928 -146889314 - AluSx SINE Alu -9 303 1 1380 174 59 42 chr6 35525990 35526277 -146888965 - AluJo SINE Alu -20 292 1 471 194 16 8 chr6 35527002 35527131 -146888111 + GA-rich Low_complexity Low_complexity 3 132 0 201 39 0 0 chr6 35530523 35530549 -146884693 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 4207 71 16 20 chr6 35532529 35533079 -146882163 - LTR14 LTR ERVK 0 548 1 42473 1 0 0 chr6 35533079 35538343 -146876899 - HERVKC4 LTR ERVK 0 5262 1 5162 2 0 0 chr6 35538343 35538891 -146876351 - LTR14 LTR ERVK 0 548 1 221 296 17 35 chr6 35540770 35540885 -146874357 + G-rich Low_complexity Low_complexity 2 114 0 336 281 167 9 chr6 35545291 35545405 -146869837 + MIR SINE MIR 72 203 -59 194 306 16 97 chr6 35546083 35546207 -146869035 + L2 LINE L2 2606 2719 -595 808 154 0 22 chr6 35547830 35547966 -146867276 - FLAM_C SINE Alu 0 133 1 188 291 35 23 chr6 35548441 35548527 -146866715 - L2 LINE L2 -1054 2260 2174 217 365 187 29 chr6 35550800 35551041 -146864201 - L3 LINE CR1 -625 952 674 550 329 93 66 chr6 35551263 35551628 -146863614 - L2 LINE L2 0 3272 2898 268 317 50 20 chr6 35552814 35552915 -146862327 + MIR SINE MIR 132 235 -27 339 226 24 0 chr6 35552954 35553038 -146862204 + MER94 DNA DNA 33 118 -16 201 158 0 0 chr6 35553525 35553563 -146861679 + (CTG)n Simple_repeat Simple_repeat 1 38 0 546 146 27 64 chr6 35553929 35554039 -146861203 - FLAM_C SINE Alu -3 140 35 433 311 30 7 chr6 35562501 35562636 -146852606 - MIR SINE MIR -55 153 16 472 348 48 5 chr6 35563875 35564085 -146851157 - MIR SINE MIR -32 230 12 199 267 67 38 chr6 35565890 35565995 -146849247 + L2 LINE L2 2554 2661 -653 736 180 7 13 chr6 35566574 35566724 -146848518 + L1MB3 LINE L1 5683 5831 -340 830 147 0 22 chr6 35566724 35566850 -146848392 + FLAM_C SINE Alu 1 125 -187 1791 168 54 3 chr6 35566850 35567201 -146848041 + L1MB3 LINE L1 5813 6181 -2 257 195 168 121 chr6 35567210 35567272 -146847970 + MER5A DNA MER1_type 13 71 -118 2227 103 3 3 chr6 35567272 35567583 -146847659 + AluY SINE Alu 1 311 0 257 195 168 121 chr6 35567583 35567669 -146847573 + MER5A DNA MER1_type 71 168 -21 236 235 71 31 chr6 35569286 35569384 -146845858 + L2 LINE L2 2560 2661 -653 247 321 109 60 chr6 35569564 35569874 -146845368 + L2 LINE L2 2888 3220 -52 2525 224 63 0 chr6 35569874 35570449 -146844793 + MER90 LTR ERV1 4 614 0 247 321 109 60 chr6 35570449 35570505 -146844737 + L2 LINE L2 3220 3272 0 394 245 49 10 chr6 35570720 35570822 -146844420 + MER5A DNA MER1_type 4 109 -80 216 271 77 82 chr6 35572412 35572582 -146842660 + L2 LINE L2 2493 2661 -653 208 291 47 63 chr6 35572768 35572895 -146842347 + L2 LINE L2 2896 3020 -252 328 351 56 16 chr6 35573713 35573964 -146841278 + L1MB7 LINE L1 5564 5824 -297 2290 115 0 0 chr6 35574239 35574551 -146840691 + AluSx SINE Alu 1 312 0 2345 91 10 0 chr6 35575155 35575464 -146839778 + AluSp SINE Alu 1 312 -1 557 294 165 47 chr6 35575542 35575746 -146839496 - L1ME4a LINE L1 -3 6118 5939 2121 112 7 0 chr6 35575746 35576041 -146839201 - AluSx SINE Alu -15 297 1 557 294 165 47 chr6 35576041 35576200 -146839042 - L1ME4a LINE L1 -182 5939 5712 2216 71 7 0 chr6 35577876 35578200 -146837042 + AluY SINE Alu 1 326 0 2203 109 0 25 chr6 35578208 35578528 -146836714 + AluSx SINE Alu 1 312 0 265 272 71 112 chr6 35579223 35579305 -146835937 - MIR SINE MIR -81 181 108 2291 97 0 3 chr6 35579305 35579613 -146835629 - AluSx SINE Alu -3 309 3 265 272 71 112 chr6 35579613 35579699 -146835543 - MIR SINE MIR -154 108 20 757 279 5 0 chr6 35580362 35580552 -146834690 + L2 LINE L2 2884 3074 -239 328 239 49 84 chr6 35580559 35580713 -146834529 + L1MC5 LINE L1 7533 7676 -285 1971 118 6 29 chr6 35580713 35580908 -146834334 - AluSx SINE Alu -4 308 121 183 42 0 0 chr6 35580908 35580932 -146834310 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1971 118 6 29 chr6 35580932 35581051 -146834191 - AluSx SINE Alu -191 121 1 328 239 49 84 chr6 35581051 35581159 -146834083 + L1MC5 LINE L1 7676 7786 -175 1631 182 0 7 chr6 35581221 35581501 -146833741 + AluJo SINE Alu 11 288 -24 279 0 0 0 chr6 35581501 35581532 -146833710 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1274 198 67 0 chr6 35581549 35581877 -146833365 + L1MB7 LINE L1 5826 6175 -9 1752 145 14 21 chr6 35581893 35582304 -146832938 + AluJb SINE Alu 1 409 0 303 226 164 7 chr6 35582323 35582469 -146832773 + L1MC5 LINE L1 7787 7955 -6 668 215 71 18 chr6 35584350 35584575 -146830667 + L1ME1 LINE L1 5806 6047 -119 1939 122 40 14 chr6 35586687 35586983 -146828259 - AluSg SINE Alu 0 310 7 1597 202 39 30 chr6 35587484 35587805 -146827437 + Charlie4a DNA MER1_type 35 363 -1598 1990 100 71 4 chr6 35587805 35588085 -146827157 + AluSq SINE Alu 1 299 -14 1597 202 39 30 chr6 35588085 35588199 -146827043 + Charlie4a DNA MER1_type 363 474 -34 1917 102 40 30 chr6 35589136 35589440 -146825802 - AluSx SINE Alu -4 308 2 1597 273 157 23 chr6 35589609 35589804 -146825438 + L2 LINE L2 2208 2375 -938 2178 92 3 0 chr6 35589804 35590097 -146825145 - AluSp SINE Alu -19 294 1 1597 273 157 23 chr6 35590097 35590857 -146824385 + L2 LINE L2 2375 3313 0 269 300 51 87 chr6 35591700 35591817 -146823425 - MIR3 SINE MIR -58 150 95 2349 103 0 0 chr6 35591817 35592129 -146823113 + AluSx SINE Alu 1 312 0 269 300 51 87 chr6 35592129 35592221 -146823021 - MIR3 SINE MIR -113 95 1 2094 108 0 0 chr6 35592862 35593131 -146822111 + AluSx SINE Alu 1 269 -43 950 42 35 7 chr6 35593140 35593283 -146821959 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 2186 112 3 6 chr6 35593294 35593607 -146821635 + AluSx SINE Alu 1 312 0 563 98 0 33 chr6 35593665 35593757 -146821485 - 5S rRNA rRNA -31 90 2 676 195 87 7 chr6 35593862 35594011 -146821231 - MIR SINE MIR -26 236 76 2473 74 0 0 chr6 35595327 35595638 -146819604 - AluY SINE Alu 0 311 1 882 225 43 10 chr6 35595639 35595848 -146819394 - MIR SINE MIR -46 216 1 732 318 5 5 chr6 35597524 35597719 -146817523 + MER91A DNA MER1_type 2 196 0 423 345 147 21 chr6 35597965 35598496 -146816746 + L2 LINE L2 1613 2210 -1104 1704 112 13 69 chr6 35598777 35599080 -146816162 - AluJo SINE Alu -16 296 11 300 324 71 19 chr6 35599266 35599476 -146815766 + L2 LINE L2 2849 3069 -203 24 77 0 0 chr6 35602740 35602792 -146812450 + GC_rich Low_complexity Low_complexity 1 52 0 219 109 43 43 chr6 35603041 35603087 -146812155 + (CTGGGG)n Simple_repeat Simple_repeat 1 46 0 864 217 48 10 chr6 35604656 35604863 -146810379 - MIR SINE MIR -20 242 28 324 319 53 18 chr6 35605235 35605348 -146809894 - L2 LINE L2 -9 3304 3188 2461 60 3 0 chr6 35606235 35606535 -146808707 - AluSp SINE Alu -12 301 1 2086 119 14 0 chr6 35606606 35606899 -146808343 - AluSq SINE Alu -16 297 1 1076 191 5 5 chr6 35607236 35607424 -146807818 - MER5A DNA MER1_type -1 188 1 1320 123 0 10 chr6 35607651 35607846 -146807396 + AluSq SINE Alu 121 313 0 368 335 41 46 chr6 35608291 35608488 -146806754 + L1ME4a LINE L1 5926 6121 0 559 282 120 53 chr6 35608751 35608932 -146806310 + L3 LINE CR1 466 633 -944 2016 126 0 19 chr6 35608932 35609249 -146805993 + AluJb SINE Alu 1 311 -1 559 282 120 53 chr6 35609249 35609425 -146805817 + L3 LINE CR1 633 847 -730 246 229 14 0 chr6 35609465 35609535 -146805707 + L1ME4a LINE L1 6045 6115 -6 556 277 125 40 chr6 35609658 35610034 -146805208 + L3 LINE CR1 1092 1499 -78 366 242 73 73 chr6 35612751 35612875 -146802367 + MER91A DNA MER1_type 70 193 -3 375 290 177 73 chr6 35613413 35613580 -146801662 + L2 LINE L2 2733 2881 -432 2213 93 3 0 chr6 35613580 35613903 -146801339 - AluSp SINE Alu 0 324 1 375 290 177 73 chr6 35613903 35614260 -146800982 + L2 LINE L2 2881 3313 0 2087 114 7 0 chr6 35614359 35614649 -146800593 - AluSx SINE Alu -14 298 7 606 196 23 60 chr6 35614653 35614786 -146800456 - FLAM_A SINE Alu -5 128 1 685 268 42 65 chr6 35614898 35615228 -146800014 + L1ME3 LINE L1 4759 5082 -1064 2122 126 0 0 chr6 35615228 35615529 -146799713 - AluSx SINE Alu -11 301 1 685 268 42 65 chr6 35615529 35615552 -146799690 + L1ME3 LINE L1 5082 5104 -1042 1855 164 10 6 chr6 35615570 35615881 -146799361 + AluJb SINE Alu 1 312 0 2168 96 16 0 chr6 35615924 35616227 -146799015 + AluSq SINE Alu 1 308 -5 301 246 26 70 chr6 35616227 35616332 -146798910 + L1ME3 LINE L1 5280 5381 -781 1190 129 29 43 chr6 35616346 35616421 -146798821 - AluSx SINE Alu -102 210 135 2198 86 3 3 chr6 35616421 35616713 -146798529 - AluY SINE Alu -19 292 1 1190 129 29 43 chr6 35616713 35616846 -146798396 - AluSx SINE Alu -177 135 5 1824 163 3 3 chr6 35616852 35617146 -146798096 - AluJo SINE Alu -16 296 3 1781 224 63 98 chr6 35617148 35617764 -146797478 + L1ME3 LINE L1 5372 5955 -207 2206 121 0 0 chr6 35617764 35618071 -146797171 + AluSc SINE Alu 1 307 -2 1781 224 63 98 chr6 35618071 35618261 -146796981 + L1ME3 LINE L1 5955 6150 -12 2185 103 0 40 chr6 35618263 35618584 -146796658 + AluSx SINE Alu 1 308 -4 421 316 77 37 chr6 35618589 35618850 -146796392 + L2 LINE L2 1715 1989 -1325 2250 98 3 3 chr6 35618850 35619155 -146796087 - AluSx SINE Alu -7 305 1 403 253 0 0 chr6 35619166 35619265 -146795977 + MER3 DNA MER1_type 35 133 -76 266 133 0 0 chr6 35619267 35619312 -146795930 + MER5B DNA MER1_type 119 163 -15 680 308 142 41 chr6 35619338 35619758 -146795484 + L2 LINE L2 2165 2541 -772 1947 152 0 7 chr6 35619758 35620061 -146795181 - AluJo SINE Alu -11 301 1 680 308 142 41 chr6 35620061 35620688 -146794554 + L2 LINE L2 2541 3313 0 1207 240 42 24 chr6 35620844 35621347 -146793895 + L1ME3A LINE L1 5535 6107 -63 214 318 45 8 chr6 35624540 35624672 -146790570 + C-rich Low_complexity Low_complexity 2 138 0 369 305 31 8 chr6 35627126 35627254 -146787988 - MIR3 SINE MIR -63 145 15 218 352 21 7 chr6 35627832 35627977 -146787265 + GA-rich Low_complexity Low_complexity 2 148 0 31 0 0 0 chr6 35628064 35628095 -146787147 + AT_rich Low_complexity Low_complexity 1 31 0 855 131 7 36 chr6 35628095 35628232 -146787010 + FLAM_C SINE Alu 1 133 0 373 303 125 7 chr6 35628964 35629116 -146786126 - MIR SINE MIR -74 188 19 1966 95 95 7 chr6 35629569 35629853 -146785389 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr6 35630411 35630433 -146784809 + AT_rich Low_complexity Low_complexity 1 22 0 228 305 9 19 chr6 35631097 35631202 -146784040 + GA-rich Low_complexity Low_complexity 4 107 0 2063 115 0 10 chr6 35633435 35633740 -146781502 + AluSx SINE Alu 1 302 -10 2314 79 0 3 chr6 35635218 35635522 -146779720 - AluY SINE Alu -8 303 1 42 0 0 0 chr6 35635522 35635564 -146779678 + AT_rich Low_complexity Low_complexity 1 42 0 2388 84 0 0 chr6 35635566 35635875 -146779367 - AluSx SINE Alu -3 309 1 2236 88 7 0 chr6 35636545 35636842 -146778400 + AluSp SINE Alu 1 299 -14 302 299 34 28 chr6 35637198 35637375 -146777867 + L2 LINE L2 2214 2391 -923 2331 60 10 3 chr6 35637691 35637990 -146777252 + AluY SINE Alu 1 301 -10 1920 143 0 25 chr6 35638062 35638377 -146776865 + AluSx SINE Alu 1 307 -5 1876 82 4 0 chr6 35638566 35638811 -146776431 - AluY SINE Alu -65 246 1 546 222 118 33 chr6 35638867 35639020 -146776222 + LTR33 LTR ERVL 3 168 -353 353 320 152 31 chr6 35639020 35639048 -146776194 + L2 LINE L2 2310 2333 -981 1863 122 20 14 chr6 35639048 35639343 -146775899 + AluSp SINE Alu 3 299 -14 353 320 152 31 chr6 35639343 35639801 -146775441 + L2 LINE L2 2333 2855 -459 321 302 31 128 chr6 35639834 35639974 -146775268 + L2 LINE L2 2971 3064 -208 2097 69 69 0 chr6 35639974 35640251 -146774991 - AluY SINE Alu -15 296 1 321 302 31 128 chr6 35640251 35640431 -146774811 + L2 LINE L2 3064 3260 -12 2120 112 0 3 chr6 35640603 35640898 -146774344 + AluSg SINE Alu 1 294 -16 1792 184 0 3 chr6 35641703 35642013 -146773229 + AluJo SINE Alu 4 312 0 1617 79 0 31 chr6 35645631 35645859 -146769383 + AluSg/x SINE Alu 90 310 0 1742 62 91 0 chr6 35645864 35646106 -146769136 + AluSq SINE Alu 1 264 -49 1751 93 4 8 chr6 35646110 35646380 -146768862 + AluSc SINE Alu 36 304 0 1940 82 11 14 chr6 35646381 35646431 -146768811 + AluY SINE Alu 1 50 -254 224 77 26 0 chr6 35646431 35646470 -146768772 + (CGGGG)n Simple_repeat Simple_repeat 3 42 0 1940 82 11 14 chr6 35646470 35646724 -146768518 + AluY SINE Alu 50 304 0 435 273 180 0 chr6 35647023 35647173 -146768069 - MER5A DNA MER1_type -1 188 12 878 120 8 15 chr6 35647180 35647313 -146767929 - FLAM_C SINE Alu 0 133 2 2136 121 0 0 chr6 35647705 35648011 -146767231 - AluSx SINE Alu -1 311 6 1554 66 20 0 chr6 35648012 35648208 -146767034 + AluSx SINE Alu 50 249 -63 1580 115 94 0 chr6 35648208 35648452 -146766790 + AluSg SINE Alu 42 308 -2 1940 109 4 0 chr6 35648686 35648953 -146766289 + AluSx SINE Alu 1 268 -44 2255 87 3 7 chr6 35649599 35649898 -146765344 + AluSq SINE Alu 1 298 -15 1329 134 42 0 chr6 35650218 35650435 -146764807 + AluJo SINE Alu 87 312 0 2181 99 0 0 chr6 35650830 35651160 -146764082 + AluSc SINE Alu 2 309 0 186 284 30 0 chr6 35651677 35651744 -146763498 - MIR SINE MIR -40 222 154 2107 115 0 10 chr6 35651785 35652090 -146763152 - AluSg SINE Alu -8 302 1 964 282 32 80 chr6 35652090 35652358 -146762884 - L2 LINE L2 -12 3301 3022 1631 182 0 4 chr6 35652358 35652638 -146762604 - AluJb SINE Alu -33 279 1 964 282 32 80 chr6 35652638 35653131 -146762111 - L2 LINE L2 -291 3022 2572 329 321 0 0 chr6 35653131 35653240 -146762002 - L2 LINE L2 -1162 2152 2044 1723 178 27 0 chr6 35653243 35653536 -146761706 - AluJb SINE Alu -10 302 2 449 229 0 29 chr6 35653559 35653700 -146761542 - L1PB4 LINE L1 0 6166 6029 2150 97 0 10 chr6 35653701 35654001 -146761241 - AluSx SINE Alu -15 297 1 1603 177 66 3 chr6 35654001 35654288 -146760954 - AluSx SINE Alu -6 306 1 614 133 0 29 chr6 35654291 35654370 -146760872 - L1PA15 LINE L1 -259 5906 5829 2337 97 0 0 chr6 35654370 35654680 -146760562 - AluSq SINE Alu -3 310 1 614 133 0 29 chr6 35654680 35654705 -146760537 - L1PA15 LINE L1 -336 5829 5805 614 225 89 35 chr6 35654707 35654876 -146760366 - MER20 DNA MER1_type -41 178 1 419 154 0 13 chr6 35654908 35654986 -146760256 + MER20 DNA MER1_type 142 218 -1 1095 246 55 113 chr6 35655009 35655160 -146760082 - PABL_B LTR ERV1 0 667 509 2367 87 0 0 chr6 35655160 35655460 -146759782 - AluSc SINE Alu -9 300 1 1095 246 55 113 chr6 35655460 35656016 -146759226 - PABL_B LTR ERV1 -158 509 1 607 264 153 8 chr6 35656017 35656271 -146758971 - L2 LINE L2 -1375 1939 1649 2295 77 24 0 chr6 35656348 35656645 -146758597 + AluSx SINE Alu 5 308 -4 1388 270 259 12 chr6 35656787 35657617 -146757625 - L2 LINE L2 -1605 1709 675 1744 148 9 49 chr6 35657624 35657761 -146757481 + AluSx SINE Alu 1 142 -170 2150 109 10 3 chr6 35657761 35658072 -146757170 + AluSq SINE Alu 1 313 0 2194 77 0 35 chr6 35658074 35658385 -146756857 + AluY SINE Alu 1 300 -11 1744 148 9 49 chr6 35658385 35658569 -146756673 + AluSx SINE Alu 143 312 0 770 122 8 16 chr6 35658578 35658695 -146756547 + FRAM SINE Alu 54 170 -1 2096 117 10 0 chr6 35658695 35659004 -146756238 + AluSq SINE Alu 1 312 -1 2323 82 0 0 chr6 35659245 35659539 -146755703 - AluY SINE Alu -17 294 1 420 139 38 13 chr6 35659952 35660031 -146755211 - MER5B DNA MER1_type -2 176 96 1382 167 29 78 chr6 35660031 35660190 -146755052 - AluJb SINE Alu -12 300 135 2193 112 0 0 chr6 35660190 35660494 -146754748 - AluSx SINE Alu -8 304 1 1829 57 4 4 chr6 35660502 35660732 -146754510 - AluY SINE Alu -8 303 74 1382 167 29 78 chr6 35660732 35660869 -146754373 - AluJb SINE Alu -184 128 10 498 233 0 0 chr6 35660877 35660980 -146754262 - MER5B DNA MER1_type -75 103 1 255 351 116 31 chr6 35661301 35661811 -146753431 - L2 LINE L2 -459 2855 2303 2200 93 3 0 chr6 35662273 35662564 -146752678 - AluSq SINE Alu -21 292 1 252 363 0 0 chr6 35662697 35662788 -146752454 + L2 LINE L2 3180 3270 -43 193 73 24 24 chr6 35665635 35665676 -146749566 + (CGG)n Simple_repeat Simple_repeat 2 42 0 198 103 0 0 chr6 35665896 35665925 -146749317 + (TGG)n Simple_repeat Simple_repeat 1 29 0 258 316 0 54 chr6 35666741 35666909 -146748333 + G-rich Low_complexity Low_complexity 4 162 0 225 163 0 0 chr6 35667070 35667119 -146748123 + G-rich Low_complexity Low_complexity 1 49 0 251 283 8 50 chr6 35670571 35670682 -146744560 + MIR SINE MIR 33 140 -122 213 108 0 0 chr6 35670682 35670719 -146744523 + (TG)n Simple_repeat Simple_repeat 1 37 0 2210 95 3 0 chr6 35671211 35671506 -146743736 - AluSx SINE Alu -16 296 1 1248 203 18 0 chr6 35671559 35671776 -146743466 - MER58A DNA MER1_type -2 222 2 749 250 82 23 chr6 35671780 35672000 -146743242 + MIR SINE MIR 27 259 -3 1849 134 14 14 chr6 35672000 35672292 -146742950 + AluSx SINE Alu 2 293 -19 1943 127 28 0 chr6 35672329 35672613 -146742629 - AluSx SINE Alu -20 292 1 651 192 73 0 chr6 35673261 35673412 -146741830 - L1MD3 LINE L1 -2 7993 7832 938 255 183 16 chr6 35673610 35674072 -146741170 - L2 LINE L2 -10 3303 2771 851 181 42 42 chr6 35674076 35674253 -146740989 - L1MB3 LINE L1 0 6183 6007 2310 83 7 0 chr6 35674253 35674553 -146740689 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr6 35674553 35674575 -146740667 + (TA)n Simple_repeat Simple_repeat 2 23 0 851 181 42 42 chr6 35674575 35674634 -146740608 - L1MB3 LINE L1 -174 6009 5946 239 204 0 0 chr6 35674634 35674683 -146740559 - L2 LINE L2 -547 2767 2719 2176 106 3 3 chr6 35674818 35675121 -146740121 - AluY SINE Alu -8 303 1 2239 62 0 7 chr6 35675157 35675446 -146739796 - AluY SINE Alu -24 287 1 2070 98 17 0 chr6 35675490 35675785 -146739457 + AluSx SINE Alu 1 300 -12 409 218 6 51 chr6 35675798 35675837 -146739405 - L1MC4 LINE L1 0 8042 8003 1848 119 41 0 chr6 35675837 35676105 -146739137 + AluJb SINE Alu 20 298 -14 409 218 6 51 chr6 35676105 35676221 -146739021 - L1MC4 LINE L1 -39 8003 7894 298 222 148 0 chr6 35676282 35676390 -146738852 - L1MC4 LINE L1 -304 7738 7615 180 0 0 0 chr6 35676390 35676410 -146738832 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2066 94 7 0 chr6 35676414 35676690 -146738552 - AluSq SINE Alu -35 278 1 2129 88 17 0 chr6 35676690 35676985 -146738257 - AluSx SINE Alu -12 300 1 1069 61 0 0 chr6 35676987 35677119 -146738123 - AluSq/x SINE Alu -180 132 1 283 273 39 0 chr6 35677120 35677197 -146738045 - L1MC4 LINE L1 -560 7482 7403 2044 144 0 0 chr6 35677309 35677621 -146737621 - AluSx SINE Alu 0 312 1 2050 89 4 7 chr6 35679999 35680312 -146734930 - AluSg SINE Alu 0 312 1 2216 76 6 19 chr6 35680368 35680684 -146734558 + AluSx SINE Alu 1 312 0 189 0 0 0 chr6 35680714 35680735 -146734507 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1185 113 0 27 chr6 35680735 35680920 -146734322 + AluSp SINE Alu 134 313 0 188 345 0 0 chr6 35684937 35684992 -146730250 + MIR3 SINE MIR 146 200 -8 204 143 0 0 chr6 35686527 35686569 -146728673 + (CAG)n Simple_repeat Simple_repeat 3 44 0 413 311 130 34 chr6 35686899 35686949 -146728293 - MIR SINE MIR 0 262 218 1389 157 63 47 chr6 35686949 35687129 -146728113 + MER33 DNA MER1_type 2 191 -2394 2363 84 0 0 chr6 35687129 35687427 -146727815 + AluSg SINE Alu 1 298 -12 1389 157 63 47 chr6 35687427 35687564 -146727678 + MER33 DNA MER1_type 191 324 0 413 311 130 34 chr6 35687564 35687751 -146727491 - MIR SINE MIR -44 218 2 377 301 283 12 chr6 35688486 35688819 -146726423 + L2 LINE L2 2560 2980 -292 442 190 0 0 chr6 35688918 35688997 -146726245 + MER5A DNA MER1_type 60 138 -51 680 178 0 0 chr6 35689002 35689109 -146726133 - FLAM_C SINE Alu -36 107 1 383 172 16 0 chr6 35689109 35689173 -146726069 + MER5A DNA MER1_type 125 189 0 376 290 145 8 chr6 35689188 35689319 -146725923 + L2 LINE L2 3161 3309 -4 201 307 6 50 chr6 35690728 35690907 -146724335 + C-rich Low_complexity Low_complexity 2 172 0 2151 100 3 50 chr6 35696809 35697130 -146718112 - AluSp SINE Alu -7 306 1 180 0 0 0 chr6 35700704 35700724 -146714518 + (CCA)n Simple_repeat Simple_repeat 3 22 0 243 79 0 0 chr6 35700724 35700762 -146714480 + (CAA)n Simple_repeat Simple_repeat 1 38 0 597 177 65 24 chr6 35702567 35702691 -146712551 - FLAM_A SINE Alu -4 129 1 21 57 0 0 chr6 35704958 35704993 -146710249 + GC_rich Low_complexity Low_complexity 1 35 0 237 115 33 33 chr6 35705276 35705337 -146709905 + GA-rich Low_complexity Low_complexity 3 63 0 315 318 0 38 chr6 35705342 35705474 -146709768 + G-rich Low_complexity Low_complexity 3 129 0 229 283 0 0 chr6 35708218 35708271 -146706971 + L2 LINE L2 3255 3307 -6 2130 115 3 3 chr6 35708312 35708616 -146706626 + AluSx SINE Alu 1 304 -8 801 169 15 0 chr6 35708751 35708881 -146706361 + AluJb SINE Alu 176 307 -5 416 241 247 0 chr6 35709054 35709216 -146706026 + MIR SINE MIR 61 262 0 2135 140 33 9 chr6 35709390 35709719 -146705523 - MER1B DNA MER1_type 0 337 1 349 130 19 0 chr6 35710092 35710146 -146705096 + L2 LINE L2 3246 3300 -13 233 194 15 75 chr6 35712803 35712870 -146702372 + MIR SINE MIR 82 144 -64 2553 52 0 0 chr6 35712907 35713215 -146702027 - AluY SINE Alu -3 308 1 930 177 55 11 chr6 35713218 35713399 -146701843 - MER5A DNA MER1_type 0 189 1 605 158 41 94 chr6 35714290 35714379 -146700863 + MIR SINE MIR 74 166 -96 1844 155 7 23 chr6 35714379 35714517 -146700725 + AluSx SINE Alu 1 140 -172 2225 92 0 0 chr6 35714517 35714831 -146700411 + AluY SINE Alu 1 314 0 1844 155 7 23 chr6 35714831 35715000 -146700242 + AluSx SINE Alu 140 304 -8 1351 112 79 0 chr6 35715000 35715215 -146700027 + MER46A DNA MER2_type 3 234 -2 605 158 41 94 chr6 35715215 35715295 -146699947 + MIR SINE MIR 164 235 -27 2353 83 3 0 chr6 35715306 35715608 -146699634 - AluY SINE Alu -8 303 1 220 293 80 0 chr6 35717785 35717860 -146697382 - MIR3 SINE MIR -4 204 124 227 329 0 0 chr6 35717867 35717940 -146697302 + L1ME LINE L1 5777 5849 -321 2246 96 7 0 chr6 35718002 35718303 -146696939 - AluSp SINE Alu -10 303 1 387 333 47 0 chr6 35719797 35719926 -146695316 - L2 LINE L2 -1 3271 3137 421 258 43 63 chr6 35719947 35720161 -146695081 - MIR SINE MIR -44 164 1 2433 84 0 0 chr6 35720367 35720677 -146694565 + AluSg SINE Alu 1 310 0 2159 99 0 30 chr6 35720847 35721149 -146694093 + AluSx SINE Alu 1 293 -19 6506 140 35 25 chr6 35721160 35722021 -146693221 + L1MA4 LINE L1 3984 4835 -1465 2322 87 7 3 chr6 35722021 35722330 -146692912 - AluSg SINE Alu 0 310 1 6506 140 35 25 chr6 35722330 35722443 -146692799 + L1MA4 LINE L1 4835 4945 -1355 2106 107 0 44 chr6 35722443 35722761 -146692481 + AluSq SINE Alu 1 304 -9 6506 140 35 25 chr6 35722761 35722847 -146692395 + L1MA4 LINE L1 4945 5029 -1271 1764 108 90 7 chr6 35722847 35723124 -146692118 + AluSg SINE Alu 1 300 -10 6506 140 35 25 chr6 35723124 35723550 -146691692 + L1MA4 LINE L1 5029 5449 -851 1982 159 0 3 chr6 35723550 35723858 -146691384 + AluSx SINE Alu 1 307 -5 6506 140 35 25 chr6 35723858 35724278 -146690964 + L1MA4 LINE L1 5449 5920 -380 2196 122 42 50 chr6 35724364 35724702 -146690540 + L1MA4 LINE L1 5903 6239 -61 2040 130 10 3 chr6 35724702 35725009 -146690233 + AluSx SINE Alu 3 311 -1 2196 122 42 50 chr6 35725009 35725071 -146690171 + L1MA4 LINE L1 6239 6300 0 221 286 91 0 chr6 35725102 35725179 -146690063 + MIR SINE MIR 14 97 -165 * 692 339 79 20 chr6 35725173 35725754 -146689488 - L2 LINE L2 -183 3089 2468 1977 118 0 4 chr6 35726078 35726388 -146688854 + AluSg SINE Alu 1 309 0 1985 101 21 31 chr6 35726408 35726745 -146688497 + AluSx SINE Alu 1 334 0 869 209 99 9 chr6 35728481 35728692 -146686550 - AluJb SINE Alu -1 311 82 243 235 20 0 chr6 35728975 35729077 -146686165 + CT-rich Low_complexity Low_complexity 1 103 0 368 295 43 43 chr6 35729494 35729567 -146685675 + L2 LINE L2 3087 3159 -154 456 67 0 0 chr6 35729567 35729627 -146685615 + (TA)n Simple_repeat Simple_repeat 2 61 0 368 295 43 43 chr6 35729627 35729760 -146685482 + L2 LINE L2 3158 3293 -20 2055 104 7 0 chr6 35729760 35730038 -146685204 - AluSx SINE Alu -17 295 16 287 372 16 0 chr6 35730771 35730900 -146684342 + L2 LINE L2 2879 3009 -263 213 341 148 70 chr6 35730935 35730965 -146684277 + L2 LINE L2 2967 2993 -279 2226 117 0 13 chr6 35730965 35731144 -146684098 - AluSx SINE Alu 0 312 137 2025 93 0 0 chr6 35731144 35731413 -146683829 - AluY SINE Alu -8 303 35 2226 117 0 13 chr6 35731413 35731549 -146683693 - AluSx SINE Alu -175 137 1 213 341 148 70 chr6 35731549 35731802 -146683440 + L2 LINE L2 2993 3272 0 234 261 15 0 chr6 35731908 35731973 -146683269 + MER91B DNA MER1_type 12 77 -113 828 253 10 10 chr6 35732549 35732747 -146682495 + MIR SINE MIR 64 261 -1 1001 227 100 0 chr6 35733922 35734142 -146681100 + MIR SINE MIR 2 243 -19 292 202 228 35 chr6 35734425 35734539 -146680703 + MER91C DNA MER1_type 3 138 -2 398 235 51 10 chr6 35736749 35736847 -146678395 + MIR SINE MIR 38 139 -69 541 304 32 23 chr6 35736917 35737137 -146678105 - MIR SINE MIR -33 229 8 301 262 41 35 chr6 35737966 35738111 -146677131 + CT-rich Low_complexity Low_complexity 2 147 0 261 0 0 0 chr6 35739004 35739033 -146676209 + (CAG)n Simple_repeat Simple_repeat 2 30 0 2152 215 45 28 chr6 35740168 35740646 -146674596 - L1MC4 LINE L1 0 8042 7551 1894 105 59 3 chr6 35740646 35740932 -146674310 - AluSq SINE Alu -11 302 1 2152 215 45 28 chr6 35740932 35741029 -146674213 - L1MC4 LINE L1 -491 7551 7457 862 175 6 23 chr6 35741145 35741316 -146673926 - FRAM SINE Alu -16 160 1 2021 106 33 13 chr6 35741360 35741663 -146673579 - AluSx SINE Alu -1 311 3 606 284 88 64 chr6 35741665 35742053 -146673189 - L1ME LINE L1 -414 5707 5311 1682 166 3 3 chr6 35742918 35743214 -146672028 + AluJb SINE Alu 9 304 -8 2429 212 144 71 chr6 35743283 35743734 -146671508 + L2 LINE L2 2052 2469 -844 2705 16 0 0 chr6 35743734 35744039 -146671203 + AluYb8 SINE Alu 1 305 -13 2429 212 144 71 chr6 35744039 35744330 -146670912 + L2 LINE L2 2469 2737 -576 1979 108 27 0 chr6 35744330 35744626 -146670616 - AluY SINE Alu -3 308 5 2429 212 144 71 chr6 35744626 35744989 -146670253 + L2 LINE L2 2737 3239 -74 230 278 308 20 chr6 35745398 35745596 -146669646 - L2 LINE L2 -5 3308 3054 1805 146 11 0 chr6 35745597 35745877 -146669365 + AluSx SINE Alu 1 283 -29 2463 87 0 0 chr6 35745877 35746189 -146669053 + AluSx SINE Alu 1 312 0 281 286 9 71 chr6 35746272 35746384 -146668858 + L2 LINE L2 2585 2689 -625 702 238 65 0 chr6 35746507 35746675 -146668567 - LTR16A LTR ERVL -186 264 86 2072 190 7 14 chr6 35746679 35747110 -146668132 + L1MB7 LINE L1 2601 3028 -3118 681 189 6 47 chr6 35747108 35747277 -146667965 + L1MB7 LINE L1 4963 5124 -1022 * 1091 158 5 68 chr6 35747282 35747503 -146667739 - AluJo SINE Alu -19 293 87 413 127 14 0 chr6 35747510 35747581 -146667661 + L1MB7 LINE L1 5127 5198 -948 2089 139 7 0 chr6 35747581 35747891 -146667351 + AluSx SINE Alu 1 312 0 912 152 78 29 chr6 35747940 35748144 -146667098 + L1MB7 LINE L1 5182 5395 -751 * 1585 179 92 46 chr6 35748139 35748491 -146666751 - L1MDa LINE L1 -4882 1658 1281 2109 113 7 3 chr6 35748491 35748800 -146666442 - AluSq SINE Alu -3 310 1 1585 179 92 46 chr6 35748800 35748883 -146666359 - L1MDa LINE L1 -5259 1281 1203 993 114 49 204 chr6 35748885 35749114 -146666128 - AluJb SINE Alu -2 310 139 276 30 0 0 chr6 35749114 35749147 -146666095 + (TTA)n Simple_repeat Simple_repeat 2 34 0 993 114 49 204 chr6 35749147 35749225 -146666017 - AluJb SINE Alu -173 139 51 2051 139 0 0 chr6 35749256 35749551 -146665691 - AluSx SINE Alu -17 295 1 2041 122 3 0 chr6 35749559 35749853 -146665389 - AluSx SINE Alu -17 295 1 2262 211 106 28 chr6 35749855 35750811 -146664431 - L1MDa LINE L1 -5315 1228 34 2688 181 31 53 chr6 35750823 35750920 -146664322 + L1MB7 LINE L1 5571 5669 -515 2375 88 0 0 chr6 35750920 35751228 -146664014 + AluSp SINE Alu 1 308 -5 2688 181 31 53 chr6 35751228 35751355 -146663887 + L1MB7 LINE L1 5669 5797 -387 1981 97 0 8 chr6 35751355 35751622 -146663620 + AluSx SINE Alu 37 301 -11 2688 181 31 53 chr6 35751622 35751964 -146663278 + L1MB7 LINE L1 5797 6125 -59 2145 108 0 0 chr6 35751964 35752259 -146662983 - AluSx SINE Alu -17 295 1 2688 181 31 53 chr6 35752259 35752307 -146662935 + L1MB7 LINE L1 6125 6173 -11 260 284 43 17 chr6 35752307 35752423 -146662819 - L2 LINE L2 -1490 1824 1706 901 228 93 36 chr6 35752440 35752527 -146662715 - L1MC5 LINE L1 -47 7914 7833 1825 117 29 4 chr6 35752527 35752800 -146662442 + AluSx SINE Alu 16 295 -17 901 228 93 36 chr6 35752800 35752867 -146662375 - L1MC5 LINE L1 -128 7833 7771 339 25 0 0 chr6 35752867 35752907 -146662335 + (ATATG)n Simple_repeat Simple_repeat 2 41 0 901 228 93 36 chr6 35752907 35753137 -146662105 - L1MC5 LINE L1 -190 7771 7507 2002 180 5 34 chr6 35753141 35753312 -146661930 - L1MD2 LINE L1 -1 7765 7591 2279 100 0 0 chr6 35753312 35753613 -146661629 + AluSx SINE Alu 1 301 -11 2002 180 5 34 chr6 35753613 35753695 -146661547 - L1MD2 LINE L1 -175 7591 7508 2041 109 7 7 chr6 35753695 35753998 -146661244 - AluSq SINE Alu -10 303 1 2002 180 5 34 chr6 35753998 35754178 -146661064 - L1MD2 LINE L1 -258 7508 6198 1817 212 127 31 chr6 35754186 35754926 -146660316 - L1MC5 LINE L1 -466 7495 6685 1846 264 184 29 chr6 35754945 35755129 -146660113 - L2 LINE L2 -1605 1709 1555 2110 120 7 0 chr6 35755129 35755437 -146659805 + AluSx SINE Alu 1 310 -2 1846 264 184 29 chr6 35755437 35756275 -146658967 - L2 LINE L2 -1759 1555 529 2101 136 0 0 chr6 35756569 35756871 -146658371 - AluSx SINE Alu -10 302 1 271 204 139 74 chr6 35757245 35757353 -146657889 - MIR3 SINE MIR -12 196 82 216 0 0 0 chr6 35757522 35757546 -146657696 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 1368 62 0 0 chr6 35757547 35757726 -146657516 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 278 190 7 70 chr6 35757820 35757904 -146657338 + MIR SINE MIR 83 162 -46 212 234 0 0 chr6 35758363 35758410 -146656832 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 318 27 9 chr6 35758542 35758652 -146656590 + G-rich Low_complexity Low_complexity 1 112 0 191 167 24 24 chr6 35759071 35759113 -146656129 - L2 LINE L2 -95 3177 3136 194 139 28 0 chr6 35759200 35759236 -146656006 + L2 LINE L2 2242 2278 -1036 693 183 92 134 chr6 35759467 35759773 -146655469 + MLT1A1 LTR MaLR 3 295 -70 833 109 0 0 chr6 35759778 35759897 -146655345 - AluSx SINE Alu 0 309 191 1161 58 0 0 chr6 35759898 35760036 -146655206 - AluSx SINE Alu -171 141 4 308 200 0 0 chr6 35760407 35760467 -146654775 - Charlie7 DNA MER1_type 0 2612 2553 300 312 70 3 chr6 35760668 35760850 -146654392 + MIR SINE MIR 45 238 -24 2179 112 0 0 chr6 35761518 35761814 -146653428 + AluSx SINE Alu 1 296 -16 530 255 0 27 chr6 35761869 35762018 -146653224 + LTR41 LTR ERVL 10 154 -619 2250 87 3 0 chr6 35762055 35762344 -146652898 - AluSx SINE Alu -22 290 1 2575 171 19 32 chr6 35762402 35763331 -146651911 + MER41-int LTR ERV1 4 1482 -4464 4299 138 50 42 chr6 35763389 35764203 -146651039 + MER41-int LTR ERV1 767 2265 -2615 1956 164 44 109 chr6 35764218 35764675 -146650567 + MER41-int LTR ERV1 2989 3415 -4122 1811 138 45 3 chr6 35764727 35765017 -146650225 - AluJo SINE Alu -10 302 1 970 158 34 118 chr6 35765069 35765380 -146649862 + MER41-int LTR ERV1 1027 1362 -4584 609 83 0 0 chr6 35765380 35765464 -146649778 + (TA)n Simple_repeat Simple_repeat 2 85 0 2049 121 0 0 chr6 35765464 35765746 -146649496 - AluSc SINE Alu -27 282 1 970 158 34 118 chr6 35765746 35765878 -146649364 + MER41-int LTR ERV1 1360 3005 -2941 2152 114 0 7 chr6 35766492 35766800 -146648442 + AluSg SINE Alu 1 306 -4 639 284 95 6 chr6 35766972 35767141 -146648101 + MER5A DNA MER1_type 5 188 -1 383 261 144 18 chr6 35767454 35767565 -146647677 + MER5A DNA MER1_type 64 188 -1 200 332 39 43 chr6 35767899 35768107 -146647135 - L2 LINE L2 -2275 1039 833 501 206 123 44 chr6 35768131 35768447 -146646795 + HAL1 LINE L1 863 1203 -1304 * 598 280 65 39 chr6 35768446 35768782 -146646460 - L1M4 LINE L1 -1835 4311 3967 1955 117 3 3 chr6 35768782 35769097 -146646145 - AluSq SINE Alu 0 315 1 1585 175 60 30 chr6 35769133 35769464 -146645778 + MER58B DNA MER1_type 1 341 0 335 259 7 58 chr6 35769892 35770078 -146645164 + G-rich Low_complexity Low_complexity 1 176 0 302 351 6 23 chr6 35770241 35770415 -146644827 + G-rich Low_complexity Low_complexity 5 175 0 2372 190 0 14 chr6 35770763 35771178 -146644064 - L1PA12 LINE L1 -7166 415 7 1328 258 71 0 chr6 35771190 35771624 -146643618 - L1M4 LINE L1 -1400 4746 4282 1038 234 86 9 chr6 35771638 35771963 -146643279 - L1MDa LINE L1 -4625 1781 1432 1249 155 0 15 chr6 35771973 35772179 -146643063 + AluJb SINE Alu 82 284 -28 271 280 0 9 chr6 35772208 35772315 -146642927 - L1MDa LINE L1 -4995 1414 1309 * 32631 108 20 49 chr6 35772299 35776945 -146638297 - L1PA7 LINE L1 0 6154 1762 2335 75 0 0 chr6 35776945 35777239 -146638003 - AluY SINE Alu -13 298 5 32631 108 20 49 chr6 35777239 35778949 -146636293 - L1PA7 LINE L1 -4392 1762 3 726 185 17 6 chr6 35778961 35779139 -146636103 - L1MDa LINE L1 -5065 1341 1162 563 53 0 85 chr6 35779141 35779235 -146636007 - L1PA11 LINE L1 0 6174 6089 7734 29 2 0 chr6 35779310 35780456 -146634786 - L1PA4 LINE L1 0 6155 5007 4279 26 37 0 chr6 35780456 35780964 -146634278 + L1PA4 LINE L1 4490 5016 -1130 1142 255 47 15 chr6 35780960 35781368 -146633874 - L1MDa LINE L1 -5235 1174 754 * 2200 94 0 16 chr6 35781455 35781762 -146633480 - AluSc SINE Alu -7 302 1 225 0 0 0 chr6 35781762 35781787 -146633455 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 866 139 0 0 chr6 35781807 35781936 -146633306 - AluSg/x SINE Alu -47 263 135 621 259 199 41 chr6 35782161 35782554 -146632688 + L1ME4a LINE L1 5665 6119 -2 268 336 92 30 chr6 35782828 35783090 -146632152 + L2 LINE L2 2688 2965 -349 311 387 95 15 chr6 35783294 35783568 -146631674 - L2 LINE L2 -4 3268 2973 2279 92 0 35 chr6 35783806 35784122 -146631120 - AluY SINE Alu -6 305 1 2262 110 3 0 chr6 35784570 35784869 -146630373 - AluSg SINE Alu -10 300 1 2291 85 3 3 chr6 35784874 35785167 -146630075 - AluY SINE Alu -18 293 1 243 0 0 0 chr6 35785211 35785238 -146630004 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 647 200 9 0 chr6 35785241 35785351 -146629891 - FLAM_A SINE Alu -18 115 5 1829 103 4 12 chr6 35785643 35785896 -146629346 - AluSq SINE Alu -8 305 55 300 167 0 17 chr6 35785939 35785999 -146629243 - AluJ/FLAM SINE Alu -243 59 1 12858 188 13 13 chr6 35786115 35789154 -146626088 + L1PB1 LINE L1 2420 5459 -692 4497 105 18 1 chr6 35789718 35790382 -146624860 + L1PB1 LINE L1 5476 6150 -1 387 203 24 107 chr6 35790423 35790550 -146624692 - L1MDa LINE L1 -3980 2560 2450 1666 184 14 0 chr6 35790550 35790838 -146624404 - AluJb SINE Alu -20 292 1 387 203 24 107 chr6 35790838 35790879 -146624363 - L1MDa LINE L1 -4090 2450 2407 2582 110 49 53 chr6 35790986 35791492 -146623750 - L1MA8 LINE L1 -6 6285 5780 552 68 0 0 chr6 35791492 35791565 -146623677 + (TA)n Simple_repeat Simple_repeat 2 74 0 2582 110 49 53 chr6 35791565 35791584 -146623658 - L1MA8 LINE L1 -511 5780 5762 1331 190 61 82 chr6 35791584 35792017 -146623225 - MER66A LTR ERV1 0 478 110 859 37 0 0 chr6 35792080 35792187 -146623055 - MER66A-int LTR ERV1 0 6676 6570 2275 104 149 8 chr6 35792187 35792562 -146622680 + MSTA LTR MaLR 1 428 0 353 98 0 0 chr6 35792562 35792613 -146622629 + MSTA-int LTR MaLR 1 51 -1600 646 251 95 40 chr6 35792729 35793266 -146621976 + L1MC4a LINE L1 948 1409 -4722 2023 148 0 19 chr6 35793328 35793646 -146621596 + AluSx SINE Alu 1 312 0 11523 121 7 22 chr6 35794116 35795367 -146619875 + L1PA8 LINE L1 8 1276 -5185 2135 125 27 0 chr6 35795367 35795662 -146619580 + AluSg SINE Alu 1 303 -7 11523 121 7 22 chr6 35795662 35797277 -146617965 + L1PA8 LINE L1 1276 2852 -3609 13507 96 16 0 chr6 35797277 35800022 -146615220 + L1PA8 LINE L1 3716 6487 0 465 298 103 55 chr6 35800153 35800677 -146614565 + L1MC4a LINE L1 4211 4759 -1370 286 214 27 98 chr6 35800677 35800789 -146614453 - MER106B DNA MER1_type -50 1009 906 285 29 0 0 chr6 35800789 35800823 -146614419 + L1P LINE L1 4269 4302 -1844 264 271 0 0 chr6 35800873 35800943 -146614299 - MER106B DNA MER1_type -989 70 1 340 299 75 35 chr6 35800943 35801144 -146614098 + L1MC4a LINE L1 4862 5070 -1059 252 0 0 0 chr6 35801148 35801176 -146614066 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3845 123 40 0 chr6 35801178 35801685 -146613557 - L1PA16 LINE L1 -1 6165 5627 249 33 0 0 chr6 35801685 35801715 -146613527 + (TA)n Simple_repeat Simple_repeat 1 30 0 3845 123 40 0 chr6 35801715 35801827 -146613415 - L1PA16 LINE L1 -539 5627 5521 1020 268 177 14 chr6 35801932 35802383 -146612859 - L2 LINE L2 -1 3312 2936 1683 143 29 25 chr6 35802383 35802694 -146612548 + AluJo SINE Alu 1 312 0 1020 268 177 14 chr6 35802694 35802960 -146612282 - L2 LINE L2 -377 2936 2469 933 275 85 44 chr6 35802995 35803628 -146611614 + L1MC4a LINE L1 5268 5775 -370 2318 94 7 0 chr6 35804183 35804481 -146610761 - AluSg SINE Alu -10 300 1 2072 93 7 0 chr6 35805288 35805558 -146609684 + AluSx SINE Alu 1 272 -40 203 152 0 0 chr6 35805811 35805844 -146609398 + CT-rich Low_complexity Low_complexity 2 34 0 432 283 332 27 chr6 35806173 35806580 -146608662 - L3 LINE CR1 -2 1575 1045 25 51 0 0 chr6 35806590 35806629 -146608613 + AT_rich Low_complexity Low_complexity 1 39 0 263 319 228 11 chr6 35806740 35807025 -146608217 + L2 LINE L2 1875 2221 -1093 217 294 35 12 chr6 35807767 35807852 -146607390 + L2 LINE L2 3197 3283 -30 228 307 0 39 chr6 35808280 35808407 -146606835 + T-rich Low_complexity Low_complexity 3 124 0 1031 241 45 20 chr6 35809700 35809945 -146605297 - MIR SINE MIR 0 262 12 2201 118 0 34 chr6 35810273 35810595 -146604647 + AluSx SINE Alu 1 311 -1 801 196 136 18 chr6 35810731 35810951 -146604291 + MIR SINE MIR 17 262 0 2573 66 3 0 chr6 35811060 35811365 -146603877 - AluSp SINE Alu -7 306 1 180 0 0 0 chr6 35811802 35811822 -146603420 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 24 32 0 0 chr6 35812585 35812616 -146602626 + AT_rich Low_complexity Low_complexity 1 31 0 896 101 7 43 chr6 35812999 35813137 -146602105 + FLAM_C SINE Alu 1 133 0 2262 105 7 0 chr6 35813519 35813813 -146601429 + AluSq SINE Alu 1 296 -17 651 283 74 13 chr6 35814318 35814548 -146600694 + MIR SINE MIR 3 246 -16 886 135 0 0 chr6 35814858 35814984 -146600258 + FLAM_C SINE Alu 1 126 -7 1899 133 17 23 chr6 35816250 35816550 -146598692 - AluJb SINE Alu -14 298 1 1675 150 35 24 chr6 35816657 35816944 -146598298 + AluJo SINE Alu 6 295 -17 1051 192 104 0 chr6 35817111 35817178 -146598064 + MER58B DNA MER1_type 33 92 -2328 387 0 0 0 chr6 35817178 35817221 -146598021 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1051 192 104 0 chr6 35817221 35817396 -146597846 + MER58B DNA MER1_type 92 302 -39 1999 155 3 7 chr6 35817396 35817700 -146597542 + AluJo SINE Alu 1 303 -9 921 289 72 38 chr6 35818065 35818441 -146596801 + L2 LINE L2 2623 3010 -303 983 196 53 46 chr6 35818441 35818875 -146596367 - L1MEd LINE L1 -3555 2985 2552 361 127 25 0 chr6 35819359 35819438 -146595804 + GA-rich Low_complexity Low_complexity 2 82 0 4171 75 49 8 chr6 35820213 35820823 -146594419 + PABL_A LTR ERV1 1 635 -25 1600 96 0 0 chr6 35820823 35821021 -146594221 - AluSx SINE Alu -114 198 1 874 219 46 63 chr6 35821440 35821791 -146593451 + MER87 LTR ERV1 196 540 -1 213 121 0 0 chr6 35821948 35821981 -146593261 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 406 296 26 15 chr6 35822430 35822694 -146592548 - L1MEc LINE L1 -3141 3241 2975 2183 131 3 0 chr6 35823003 35823300 -146591942 - AluSq SINE Alu -15 298 1 21 82 0 0 chr6 35823386 35823435 -146591807 + AT_rich Low_complexity Low_complexity 1 49 0 303 348 27 39 chr6 35823435 35823558 -146591684 - L1MEc LINE L1 -4079 2484 2361 2654 7 0 0 chr6 35823558 35823844 -146591398 + AluYa5 SINE Alu 17 302 -9 303 348 27 39 chr6 35823844 35823976 -146591266 - L1MEc LINE L1 -4202 2361 2232 338 145 0 14 chr6 35824146 35824173 -146591069 + (TTCTCC)n Simple_repeat Simple_repeat 5 31 -41 1797 172 26 0 chr6 35824173 35824475 -146590767 - AluJb SINE Alu -2 310 1 338 145 0 14 chr6 35824475 35824516 -146590726 + (TTCTCC)n Simple_repeat Simple_repeat 31 72 0 351 335 27 8 chr6 35824627 35824826 -146590416 - L1MEc LINE L1 -845 1898 1543 2850 117 29 22 chr6 35824829 35825318 -146589924 - L1MA3 LINE L1 0 6305 5814 413 268 75 114 chr6 35825329 35825876 -146589366 - L1MEd LINE L1 -962 1939 1283 231 36 0 0 chr6 35825958 35825986 -146589256 + (TA)n Simple_repeat Simple_repeat 2 29 0 732 316 117 7 chr6 35826125 35826562 -146588680 + L2 LINE L2 1821 2305 -1009 1369 282 120 34 chr6 35827813 35828636 -146586606 + L2 LINE L2 2325 3309 -4 435 235 15 37 chr6 35830085 35830221 -146585021 + MER102b DNA MER1_type 205 337 -4 1962 129 4 0 chr6 35830482 35830782 -146584460 + AluSx SINE Alu 1 301 0 867 89 73 0 chr6 35832018 35832141 -146583101 + AluY SINE Alu 1 132 -179 5687 111 20 3 chr6 35832258 35833665 -146581577 + L1PA13 LINE L1 4739 6161 -2 1981 138 15 50 chr6 35833743 35834140 -146581102 + L1MB8 LINE L1 5791 6173 -5 1362 283 122 34 chr6 35834272 35835093 -146580149 + L2 LINE L2 2325 3309 -4 3506 106 23 0 chr6 35835894 35836414 -146578828 - L1PA13 LINE L1 -5 6158 5627 422 254 110 21 chr6 35837039 35837258 -146577984 + MER102a DNA MER1_type 92 326 -4 21 36 0 0 chr6 35838179 35838207 -146577035 + AT_rich Low_complexity Low_complexity 1 28 0 216 303 230 6 chr6 35838438 35838616 -146576626 + MIR SINE MIR 44 261 -1 297 381 0 0 chr6 35841028 35841196 -146574046 + (TGG)n Simple_repeat Simple_repeat 1 168 0 1679 123 110 48 chr6 35842872 35843027 -146572215 - AluSx SINE Alu -2 310 166 2175 71 3 52 chr6 35843027 35843335 -146571907 - AluY SINE Alu -18 293 1 1679 123 110 48 chr6 35843335 35843471 -146571771 - AluSx SINE Alu -146 166 1 2261 95 0 16 chr6 35843474 35843645 -146571597 - AluSg SINE Alu -9 301 136 2290 113 0 3 chr6 35843645 35843946 -146571296 - AluSx SINE Alu -12 300 1 2261 95 0 16 chr6 35843946 35844080 -146571162 - AluSg SINE Alu -174 136 1 596 176 9 0 chr6 35844133 35844241 -146571001 - L1PB4 LINE L1 -14 6142 6034 338 245 65 125 chr6 35844804 35844988 -146570254 + L2 LINE L2 3097 3269 -3 342 0 0 0 chr6 35845865 35845903 -146569339 + (CA)n Simple_repeat Simple_repeat 2 39 0 2083 95 25 7 chr6 35845908 35846191 -146569051 - AluSx SINE Alu -24 288 1 3195 89 22 0 chr6 35846671 35847121 -146568121 + LTR46 LTR ERV1 1 460 0 1739 175 7 11 chr6 35847818 35848137 -146567105 - AluJo SINE Alu 0 318 1 2091 106 0 11 chr6 35848229 35848512 -146566730 - AluSg SINE Alu -6 304 25 305 253 27 73 chr6 35849745 35849895 -146565347 + MIR SINE MIR 109 251 -11 2282 102 0 3 chr6 35849976 35850279 -146564963 + AluY SINE Alu 1 302 -9 31 44 0 0 chr6 35850713 35850758 -146564484 + AT_rich Low_complexity Low_complexity 1 45 0 510 89 13 0 chr6 35851668 35851747 -146563495 + L1PA16 LINE L1 6078 6157 -9 32 0 0 0 chr6 35852065 35852097 -146563145 + AT_rich Low_complexity Low_complexity 1 32 0 255 61 0 0 chr6 35852889 35852922 -146562320 + (CA)n Simple_repeat Simple_repeat 1 33 0 445 192 0 13 chr6 35852942 35853020 -146562222 - AluJ/FLAM SINE Alu -235 77 1 520 205 186 31 chr6 35853411 35853572 -146561670 - MER5A DNA MER1_type 0 189 4 483 100 12 0 chr6 35854715 35854795 -146560447 + L1MA5 LINE L1 6215 6295 -5 338 294 33 0 chr6 35854992 35855084 -146560158 + MIR SINE MIR 58 152 -56 371 282 70 19 chr6 35855829 35855985 -146559257 + MER117 DNA MER1_type 34 197 0 2135 130 7 0 chr6 35856020 35856321 -146558921 - AluSx SINE Alu -9 303 1 231 281 45 22 chr6 35856713 35856802 -146558440 - MER102a DNA MER1_type -239 91 1 1943 129 38 0 chr6 35857392 35857679 -146557563 - AluSx SINE Alu -14 298 1 487 269 9 0 chr6 35857755 35857863 -146557379 - MIR SINE MIR -149 113 5 216 325 98 26 chr6 35858045 35858310 -146556932 - L2 LINE L2 -1568 1746 1463 32 0 0 0 chr6 35859302 35859334 -146555908 + AT_rich Low_complexity Low_complexity 1 32 0 1365 40 0 40 chr6 35859334 35859510 -146555732 - L1PA3 LINE L1 -3 6152 5984 1558 180 22 7 chr6 35860095 35860373 -146554869 - AluJo SINE Alu -30 282 1 521 274 158 0 chr6 35860686 35860876 -146554366 + MIR SINE MIR 39 258 -4 424 326 119 44 chr6 35861130 35861424 -146553818 + L2 LINE L2 39 354 -2960 1844 154 7 0 chr6 35861442 35861722 -146553520 + AluSx SINE Alu 3 284 -28 1509 104 73 0 chr6 35861746 35862006 -146553236 + L1MA8 LINE L1 6008 6286 -5 1424 140 10 0 chr6 35862050 35862257 -146552985 - AluJo SINE Alu -18 294 86 302 229 122 46 chr6 35862311 35862442 -146552800 + L2 LINE L2 446 586 -2728 448 351 117 7 chr6 35862462 35862893 -146552349 + L2 LINE L2 2658 3142 -171 25 90 0 0 chr6 35863348 35863415 -146551827 + AT_rich Low_complexity Low_complexity 1 67 0 310 276 25 44 chr6 35863508 35863648 -146551594 + MIR SINE MIR 1 142 -66 1667 189 6 82 chr6 35865516 35866004 -146549238 + MLT1D LTR MaLR 55 505 0 677 278 63 39 chr6 35866012 35866346 -146548896 + MLT1J2 LTR MaLR 65 406 -44 407 263 75 0 chr6 35866835 35866968 -146548274 + HAL1 LINE L1 1536 1678 -829 424 291 111 54 chr6 35867270 35867676 -146547566 + L1ME LINE L1 2065 2493 -3903 629 158 20 0 chr6 35867751 35867852 -146547390 + U6 snRNA snRNA 1 103 -4 376 315 123 16 chr6 35868012 35868689 -146546553 + L1ME LINE L1 4246 4994 -1221 460 307 73 72 chr6 35868802 35869319 -146545923 + L1ME LINE L1 5065 5593 -638 258 267 38 0 chr6 35869494 35869599 -146545643 + L1ME LINE L1 5773 5881 -352 25 0 0 0 chr6 35869756 35869781 -146545461 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr6 35869879 35869908 -146545334 + AT_rich Low_complexity Low_complexity 1 29 0 256 315 0 11 chr6 35870259 35870351 -146544891 + T-rich Low_complexity Low_complexity 2 92 0 2064 129 0 0 chr6 35871317 35871611 -146543631 + AluSx SINE Alu 10 303 -9 402 274 32 16 chr6 35872252 35872376 -146542866 + MIR SINE MIR 32 157 -105 648 277 194 9 chr6 35872407 35872732 -146542510 - L2 LINE L2 -615 2699 2315 414 289 235 7 chr6 35872748 35872897 -146542345 + MER91A DNA MER1_type 14 196 0 214 294 22 33 chr6 35872942 35873034 -146542208 + MIR SINE MIR 166 256 -6 4020 42 0 8 chr6 35873287 35873782 -146541460 - L1PA5 LINE L1 -2 6152 5662 198 0 0 0 chr6 35873785 35873807 -146541435 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1864 10 0 0 chr6 35873807 35874016 -146541226 - L1PA3 LINE L1 -18 6137 5929 3226 31 0 0 chr6 35874016 35874689 -146540553 - L1PA5 LINE L1 -500 5655 4983 4497 157 79 8 chr6 35874759 35875254 -146539988 - L1MA9 LINE L1 0 6312 5854 261 57 0 0 chr6 35875254 35875289 -146539953 + (TG)n Simple_repeat Simple_repeat 2 36 0 4497 157 79 8 chr6 35875289 35875716 -146539526 - L1MA9 LINE L1 -458 5854 5324 204 40 0 0 chr6 35875716 35875741 -146539501 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3106 169 40 83 chr6 35875756 35876690 -146538552 - L1PB4 LINE L1 0 6220 5319 2386 130 52 40 chr6 35876690 35876879 -146538363 + MSTC LTR MaLR 1 186 -242 2600 39 3 0 chr6 35876879 35877185 -146538057 + AluY SINE Alu 1 307 -4 2386 130 52 40 chr6 35877185 35877418 -146537824 + MSTC LTR MaLR 186 428 0 3106 169 40 83 chr6 35877418 35877796 -146537446 - L1PB4 LINE L1 -901 5319 4926 2296 263 47 25 chr6 35877802 35879749 -146535493 - L1PB4 LINE L1 -3547 2663 826 1791 191 7 0 chr6 35879774 35880068 -146535174 - AluJo SINE Alu -14 298 3 655 213 15 0 chr6 35880083 35880219 -146535023 - L1PB4 LINE L1 -5329 812 675 2038 213 26 12 chr6 35880374 35880797 -146534445 - L1PB4 LINE L1 -5704 437 9 2453 58 10 10 chr6 35881363 35881672 -146533570 + AluY SINE Alu 1 309 -2 216 0 0 0 chr6 35881938 35881962 -146533280 + (TG)n Simple_repeat Simple_repeat 2 25 0 567 78 0 0 chr6 35882103 35882180 -146533062 + (GA)n Simple_repeat Simple_repeat 2 78 0 269 266 96 0 chr6 35882356 35882450 -146532792 + MIR SINE MIR 47 149 -113 235 328 0 0 chr6 35883575 35883633 -146531609 - L2 LINE L2 -46 3226 3169 2403 94 0 0 chr6 35884262 35884570 -146530672 - AluSg SINE Alu -2 308 1 262 103 51 0 chr6 35885218 35885257 -146529985 + Charlie7 DNA MER1_type 50 90 -2522 189 0 0 0 chr6 35885302 35885323 -146529919 + (TA)n Simple_repeat Simple_repeat 1 21 0 195 42 0 0 chr6 35885735 35885759 -146529483 + (GA)n Simple_repeat Simple_repeat 2 25 0 2208 106 3 10 chr6 35887025 35887326 -146527916 - AluSp SINE Alu -14 299 1 2577 128 30 10 chr6 35887425 35887823 -146527419 + L1PA15 LINE L1 5757 6162 -3 1017 279 63 6 chr6 35888322 35888641 -146526601 + L1M4c LINE L1 1224 1560 -4824 * 1505 200 80 29 chr6 35888640 35889125 -146526117 - L1M4 LINE L1 -5206 1336 777 261 0 0 0 chr6 35889125 35889154 -146526088 + (TG)n Simple_repeat Simple_repeat 2 30 0 1505 200 80 29 chr6 35889154 35889181 -146526061 - L1M4 LINE L1 -5765 777 753 6775 127 12 5 chr6 35889181 35890156 -146525086 + HUERS-P2 LTR ERV1 1850 2831 -257 1640 149 20 0 chr6 35890232 35890481 -146524761 + HUERS-P2 LTR ERV1 2833 3086 -2 3652 152 39 50 chr6 35890483 35891319 -146523923 + LTR1 LTR ERV1 1 785 0 987 329 50 27 chr6 35891319 35891642 -146523600 - L2 LINE L2 -162 3151 2803 1856 151 3 10 chr6 35891642 35891934 -146523308 + AluJo SINE Alu 1 290 -22 987 329 50 27 chr6 35891934 35892215 -146523027 - L2 LINE L2 -510 2803 2530 401 305 59 8 chr6 35892836 35893075 -146522167 + L1M4 LINE L1 4177 4427 -1719 180 0 0 0 chr6 35893199 35893219 -146522023 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 257 0 30 0 chr6 35893500 35893533 -146521709 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 1466 158 113 37 chr6 35893617 35893998 -146521244 + L1MA7 LINE L1 5867 6276 -15 266 179 43 7 chr6 35894003 35894143 -146521099 + (TA)n Simple_repeat Simple_repeat 1 145 0 45 45 0 0 chr6 35894209 35894275 -146520967 + AT_rich Low_complexity Low_complexity 1 66 0 2599 228 31 20 chr6 35894289 35895048 -146520194 + L1M4 LINE L1 4457 5215 -931 938 250 75 81 chr6 35895028 35895859 -146519383 + L1ME2 LINE L1 3686 4511 -1635 * 2129 234 95 13 chr6 35895858 35896550 -146518692 + L1ME2 LINE L1 5241 5988 -176 265 259 86 17 chr6 35896557 35896673 -146518569 + L1ME2 LINE L1 6041 6164 0 1594 155 3 68 chr6 35897188 35897498 -146517744 - AluJo SINE Alu -17 295 6 1875 207 79 53 chr6 35897631 35898123 -146517119 + MLT1F LTR MaLR 38 542 0 6738 61 7 28 chr6 35899049 35901003 -146514239 - SVA Other Other -599 1384 534 211 283 0 0 chr6 35901101 35901154 -146514088 + (CTA)n Simple_repeat Simple_repeat 1 53 0 288 330 78 44 chr6 35901197 35901403 -146513839 - MIR SINE MIR -38 224 12 1106 111 13 0 chr6 35903386 35903576 -146511666 - AluSc SINE Alu 0 323 132 1868 48 9 13 chr6 35903576 35903805 -146511437 - L1PA6 LINE L1 0 6154 5927 526 33 0 0 chr6 35903805 35903866 -146511376 + L1PA5 LINE L1 5806 5866 -288 906 118 0 22 chr6 35903867 35904003 -146511239 - AluSc SINE Alu -176 133 1 241 287 74 46 chr6 35904892 35905000 -146510242 + L2 LINE L2 3186 3296 -17 230 262 107 33 chr6 35905014 35905136 -146510106 - L2 LINE L2 0 3313 3183 21 82 0 0 chr6 35905645 35905694 -146509548 + AT_rich Low_complexity Low_complexity 1 49 0 1202 196 33 4 chr6 35905770 35906015 -146509227 + L1MC2 LINE L1 6088 6339 -5 1536 160 49 65 chr6 35906018 35906386 -146508856 + L1MB5 LINE L1 5813 6174 0 30 27 0 0 chr6 35906723 35906760 -146508482 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr6 35906998 35907019 -146508223 + AT_rich Low_complexity Low_complexity 1 21 0 2324 125 0 0 chr6 35907073 35907385 -146507857 + AluSx SINE Alu 1 312 0 2128 115 20 0 chr6 35911544 35911840 -146503402 + AluSx SINE Alu 1 302 -10 248 289 26 13 chr6 35911881 35911957 -146503285 + MER57A LTR ERV1 39 115 -319 1268 232 21 1 chr6 35912085 35912399 -146502843 + MER57A LTR ERV1 106 403 0 1903 106 51 4 chr6 35913767 35914041 -146501201 - L1PA11 LINE L1 0 6174 5888 261 242 154 0 chr6 35914308 35914399 -146500843 - MIR3 SINE MIR -21 187 83 249 378 77 14 chr6 35914401 35914610 -146500632 + MIR SINE MIR 13 234 -28 25 31 0 0 chr6 35914610 35914642 -146500600 + AT_rich Low_complexity Low_complexity 1 32 0 2236 89 0 23 chr6 35915472 35915774 -146499468 + AluSc SINE Alu 1 295 -14 2607 50 0 0 chr6 35915775 35916075 -146499167 + AluY SINE Alu 2 301 -10 358 277 104 22 chr6 35917212 35917443 -146497799 - L1ME4a LINE L1 -238 5883 5634 207 88 0 0 chr6 35920638 35920672 -146494570 + (T)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr6 35921363 35921384 -146493858 + AT_rich Low_complexity Low_complexity 1 21 0 443 253 43 54 chr6 35921551 35921730 -146493512 - MIR SINE MIR -33 229 55 2006 139 37 6 chr6 35922150 35922474 -146492768 + LTR64 LTR ERVK 1 334 -224 * 2035 147 84 3 chr6 35922467 35922813 -146492429 + LTR44 LTR ERV1 138 511 -8 902 200 62 26 chr6 35924157 35924352 -146490890 + MER20 DNA MER1_type 5 206 -13 2907 29 0 0 chr6 35924951 35925301 -146489941 - L1P LINE L1 -839 5307 4958 * 3644 2 0 0 chr6 35925298 35925695 -146489547 + L1HS LINE L1 5757 6153 -2 203 258 124 10 chr6 35925808 35925905 -146489337 + MIR SINE MIR 82 190 -18 286 309 187 8 chr6 35926854 35926977 -146488265 - MIR3 SINE MIR -61 147 3 213 316 46 69 chr6 35928592 35928766 -146486476 + MIR SINE MIR 31 200 -62 416 200 32 8 chr6 35929320 35929445 -146485797 + GA-rich Low_complexity Low_complexity 3 130 0 2208 113 0 0 chr6 35929627 35929942 -146485300 + AluSx SINE Alu 1 315 0 217 183 14 14 chr6 35930738 35930809 -146484433 + GA-rich Low_complexity Low_complexity 1 71 0 3340 90 5 0 chr6 35931054 35931500 -146483742 - MER41B LTR ERV1 -187 448 1 24 32 0 0 chr6 35931697 35931728 -146483514 + AT_rich Low_complexity Low_complexity 1 31 0 889 252 156 15 chr6 35931842 35932310 -146482932 + L1ME LINE L1 4220 4753 -1393 845 306 116 18 chr6 35932320 35932891 -146482351 - L2 LINE L2 -1056 2258 1632 299 322 142 22 chr6 35932943 35933397 -146481845 + L1ME LINE L1 5255 5764 -398 2514 48 0 0 chr6 35933476 35933768 -146481474 - AluY SINE Alu -19 292 1 867 118 183 7 chr6 35934023 35934176 -146481066 - MER4C LTR ERV1 -2 463 284 3012 119 47 7 chr6 35934265 35934712 -146480530 - MER4C LTR ERV1 0 465 1 24 53 0 0 chr6 35935537 35935575 -146479667 + AT_rich Low_complexity Low_complexity 1 38 0 289 286 14 0 chr6 35936278 35936348 -146478894 + L1ME LINE L1 10 80 -5990 1563 159 12 0 chr6 35936373 35936624 -146478618 - L1MB1 LINE L1 -1 6167 5914 402 229 57 19 chr6 35936624 35936729 -146478513 - LTR19C LTR ERV1 0 779 671 4215 98 7 0 chr6 35936729 35937312 -146477930 - L1P LINE L1 -3217 2929 2343 2938 56 23 42 chr6 35937308 35937740 -146477502 - L1P LINE L1 -2782 3364 2941 * 11998 123 40 14 chr6 35937742 35937912 -146477330 + Tigger3(Golem) DNA MER2_type 1067 1231 -1798 2375 91 10 0 chr6 35937912 35938209 -146477033 + AluY SINE Alu 1 300 -11 459 0 0 0 chr6 35938209 35938260 -146476982 + (TA)n Simple_repeat Simple_repeat 2 52 0 11998 123 40 14 chr6 35938260 35940000 -146475242 + Tigger3(Golem) DNA MER2_type 1230 3028 -1 3092 151 53 22 chr6 35940983 35941038 -146474204 + MER89 LTR ERV1 1 53 -506 2367 77 3 3 chr6 35941038 35941335 -146473907 + AluSc SINE Alu 1 297 -12 3092 151 53 22 chr6 35941335 35941821 -146473421 + MER89 LTR ERV1 53 559 0 265 261 112 30 chr6 35942283 35942417 -146472825 + LTR33A LTR ERVL 350 494 -29 489 190 0 0 chr6 35942510 35942589 -146472653 - Tigger5 DNA MER2_type 0 2323 2245 * 881 217 148 0 chr6 35942585 35942774 -146472468 - Tigger5 DNA MER2_type -2097 226 10 1258 172 43 27 chr6 35942904 35943345 -146471897 - L1MD2 LINE L1 -2 6357 5855 870 218 40 110 chr6 35943346 35943700 -146471542 - MLT2D LTR ERVL 0 414 86 646 141 0 0 chr6 35943780 35943872 -146471370 - MER6 DNA MER2_type -4 861 770 741 168 198 51 chr6 35943872 35944069 -146471173 - MER1B DNA MER1_type 0 339 114 4418 180 25 7 chr6 35944101 35944650 -146470592 - MER6 DNA MER2_type -83 782 214 330 26 0 0 chr6 35944650 35944689 -146470553 + (CA)n Simple_repeat Simple_repeat 2 40 0 4418 180 25 7 chr6 35944689 35944907 -146470335 - MER6 DNA MER2_type -651 214 1 488 134 0 0 chr6 35944907 35944974 -146470268 - MLT1A2 LTR MaLR -66 308 242 2858 265 72 6 chr6 35944995 35945819 -146469423 - L1MDa LINE L1 -5660 880 3 35 41 0 0 chr6 35946822 35946871 -146468371 + AT_rich Low_complexity Low_complexity 1 49 0 223 288 91 35 chr6 35947252 35947366 -146467876 + MIR SINE MIR 44 161 -65 568 151 38 9 chr6 35947611 35947717 -146467525 - Tigger5 DNA MER2_type 0 2323 2215 267 211 58 0 chr6 35947709 35947761 -146467481 - Tigger5 DNA MER2_type -2268 55 1 * 3152 53 55 2 chr6 35948983 35949380 -146465862 + L1PA8 LINE L1 5750 6167 -5 342 123 0 0 chr6 35950462 35950519 -146464723 + (CA)n Simple_repeat Simple_repeat 2 58 0 2261 84 0 44 chr6 35953022 35953342 -146461900 + AluY SINE Alu 1 306 -5 2487 81 3 0 chr6 35953657 35953966 -146461276 + AluSg SINE Alu 1 310 0 216 0 0 0 chr6 35955169 35955193 -146460049 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2363 85 0 3 chr6 35955956 35956263 -146458979 + AluSc SINE Alu 1 306 -3 181 301 88 37 chr6 35956703 35956839 -146458403 - MIR SINE MIR -66 196 54 278 321 98 5 chr6 35960662 35960846 -146454396 + MIR SINE MIR 36 236 -26 2434 82 3 0 chr6 35960990 35961294 -146453948 + AluSc SINE Alu 1 305 -4 2602 57 0 10 chr6 35961498 35961812 -146453430 + AluY SINE Alu 1 311 0 4669 170 43 14 chr6 35961823 35962675 -146452567 - L1MC2 LINE L1 -11 6333 5457 2305 201 43 111 chr6 35962677 35963377 -146451865 - L1MD2 LINE L1 -14 6228 5577 1122 170 121 106 chr6 35963379 35963481 -146451761 + AluJo SINE Alu 2 101 -201 2375 96 0 0 chr6 35963481 35963774 -146451468 - AluSc SINE Alu -16 293 1 1122 170 121 106 chr6 35963774 35963953 -146451289 + AluJo SINE Alu 101 287 -15 882 138 6 22 chr6 35963970 35964151 -146451091 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 811 137 43 26 chr6 35964128 35964437 -146450805 + GA-rich Low_complexity Low_complexity 1 314 0 * 10806 184 7 14 chr6 35964454 35964495 -146450747 - L1P LINE L1 -1571 4575 4535 2277 112 0 6 chr6 35964495 35964807 -146450435 - AluSx SINE Alu 0 312 3 10806 184 7 14 chr6 35964807 35966902 -146448340 - L1P LINE L1 -1611 4535 2455 2441 136 37 14 chr6 35966902 35967256 -146447986 + THE1B LTR MaLR 1 362 -2 11379 102 8 10 chr6 35967257 35967849 -146447393 + THE1B-int LTR MaLR 14 606 -974 2361 86 14 0 chr6 35967849 35968141 -146447101 - AluY SINE Alu -15 296 1 11379 102 8 10 chr6 35968141 35969119 -146446123 + THE1B-int LTR MaLR 606 1580 0 2586 114 31 14 chr6 35969119 35969477 -146445765 + THE1B LTR MaLR 1 364 0 10860 174 11 11 chr6 35969492 35970062 -146445180 + L1PA15 LINE L1 3389 3958 -2207 2154 104 4 0 chr6 35970062 35970341 -146444901 + AluSc SINE Alu 15 294 -15 10860 174 11 11 chr6 35970341 35970492 -146444750 + L1PA15 LINE L1 3958 4108 -2057 1932 123 3 48 chr6 35970492 35970801 -146444441 - AluSc SINE Alu -14 295 1 10860 174 11 11 chr6 35970801 35971937 -146443305 + L1PA15 LINE L1 4108 5243 -922 2657 147 58 14 chr6 35971937 35972366 -146442876 + MER83 LTR ERV1 1 448 0 10860 174 11 11 chr6 35972366 35972971 -146442271 + L1PA15 LINE L1 5243 5827 -338 4938 74 115 124 chr6 35972971 35973804 -146441438 - LTR12 LTR ERV1 0 826 1 10860 174 11 11 chr6 35973804 35974143 -146441099 + L1PA15 LINE L1 5826 6164 -1 233 343 64 101 chr6 35975294 35975843 -146439399 - L2 LINE L2 -5 3267 2739 214 284 27 0 chr6 35976028 35976102 -146439140 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 2971 90 11 0 chr6 35976213 35976591 -146438651 - L1PA10 LINE L1 -10 6158 5777 285 285 107 67 chr6 35976594 35976969 -146438273 + Tigger4(Zombi) DNA MER2_type 457 846 -1885 711 216 148 6 chr6 35976983 35977145 -146438097 - MER20 DNA MER1_type -6 213 29 2207 159 27 30 chr6 35977594 35977959 -146437283 + THE1B LTR MaLR 1 364 0 389 133 8 6 chr6 35978237 35978358 -146436884 + MER53 DNA DNA 2 188 -1 190 348 128 12 chr6 35978598 35978762 -146436480 + MIR SINE MIR 11 193 -69 215 279 73 15 chr6 35979059 35979127 -146436115 + MIR SINE MIR 58 129 -79 248 378 9 9 chr6 35979233 35979344 -146435898 + L2 LINE L2 3203 3313 0 964 307 124 41 chr6 35979521 35980330 -146434912 + L2 LINE L2 1776 2517 -796 9669 29 11 0 chr6 35980330 35981389 -146433853 - MER11C LTR ERVK 0 1071 1 964 307 124 41 chr6 35981389 35981988 -146433254 + L2 LINE L2 2517 3313 0 720 95 0 3 chr6 35982215 35982447 -146432795 + AluSg SINE Alu 2 303 -9 20855 36 1 1 chr6 35982454 35985610 -146429632 - L1PA4 LINE L1 0 6155 2993 2071 132 3 7 chr6 35985702 35986012 -146429230 + AluSq SINE Alu 1 309 -4 598 316 63 71 chr6 35986023 35986574 -146428668 + L2 LINE L2 2766 3312 -1 22 0 0 0 chr6 35986760 35986782 -146428460 + AT_rich Low_complexity Low_complexity 1 22 0 1510 215 7 0 chr6 35986800 35987093 -146428149 + AluJb SINE Alu 3 297 -15 297 208 13 0 chr6 35987364 35987441 -146427801 + MER116 DNA Mariner 2 79 -1 1944 131 10 0 chr6 35989361 35989651 -146425591 - AluY SINE Alu -18 293 1 21 0 0 0 chr6 35989924 35989945 -146425297 + AT_rich Low_complexity Low_complexity 1 21 0 2299 94 0 3 chr6 35990035 35990342 -146424900 - AluY SINE Alu -5 306 1 23094 115 28 7 chr6 35990343 35992174 -146423068 - HERVK3 LTR ERVK -3792 3451 1514 2331 85 7 7 chr6 35992174 35992469 -146422773 + AluY SINE Alu 1 295 -16 23094 115 28 7 chr6 35992469 35994016 -146421226 - HERVK3 LTR ERVK -5729 1514 1 2336 178 33 7 chr6 35994016 35994437 -146420805 - LTR3 LTR ERVK 0 432 1 2146 94 3 11 chr6 35994561 35994876 -146420366 + AluY SINE Alu 1 313 0 934 196 39 17 chr6 35994923 35995102 -146420140 - MER20 DNA MER1_type -7 212 30 341 167 25 6 chr6 35995861 35995973 -146419269 + MER53 DNA DNA 9 188 -1 218 313 12 12 chr6 35996891 35996971 -146418271 + L2 LINE L2 3229 3308 -5 585 318 144 38 chr6 35997188 35998520 -146416722 + L2 LINE L2 1813 3296 -17 2254 118 3 0 chr6 35998720 35999025 -146416217 - AluSc SINE Alu -3 306 1 21 57 0 0 chr6 35999035 35999070 -146416172 + AT_rich Low_complexity Low_complexity 1 35 0 1576 191 28 0 chr6 35999085 35999373 -146415869 + AluJb SINE Alu 1 296 -16 301 208 13 0 chr6 35999653 35999730 -146415512 + MER116 DNA Mariner 2 79 -1 211 344 21 11 chr6 36001101 36001194 -146414048 + MIR SINE MIR 21 114 -94 274 310 76 47 chr6 36002079 36002250 -146412992 - MIR SINE MIR -19 243 68 728 221 236 30 chr6 36003096 36003367 -146411875 + MER52A LTR ERV1 221 547 -1208 2774 212 130 39 chr6 36003397 36004053 -146411189 - L1MDa LINE L1 -3891 2649 1858 1855 161 0 37 chr6 36004053 36004376 -146410866 + AluJb SINE Alu 1 311 -1 2774 212 130 39 chr6 36004376 36004780 -146410462 - L1MDa LINE L1 -4682 1858 1492 975 289 70 30 chr6 36004872 36005401 -146409841 + L1M4 LINE L1 3389 3938 -2208 1207 174 31 9 chr6 36005411 36005635 -146409607 + MSTB LTR MaLR 198 426 0 1014 257 59 32 chr6 36005680 36006237 -146409005 - L1M4 LINE L1 -2988 3158 2587 247 302 48 0 chr6 36007374 36007500 -146407742 - L1P5 LINE L1 -712 5439 5308 905 248 51 39 chr6 36007789 36008120 -146407122 - L1MB8 LINE L1 -32 6146 5812 623 241 0 0 chr6 36008121 36008258 -146406984 - L1PB4 LINE L1 0 6156 6020 381 224 0 0 chr6 36008258 36008334 -146406908 - U1 snRNA snRNA -87 78 3 1187 257 24 3 chr6 36008345 36008637 -146406605 - L1MB8 LINE L1 -349 5817 5520 21 36 0 0 chr6 36008842 36008870 -146406372 + AT_rich Low_complexity Low_complexity 1 28 0 248 287 23 0 chr6 36009119 36009206 -146406036 + L1MC4 LINE L1 6615 6703 -1339 247 125 0 0 chr6 36009216 36009264 -146405978 - LTR66 LTR ERVL -169 441 394 329 335 106 24 chr6 36009540 36009833 -146405409 + MLT1L LTR MaLR 223 539 -76 617 136 16 24 chr6 36010546 36010671 -146404571 - L1MA8 LINE L1 -4 6287 6164 210 91 0 0 chr6 36010717 36010750 -146404492 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 738 109 0 0 chr6 36011370 36011471 -146403771 - LTR12 LTR ERV1 -133 581 481 255 316 53 0 chr6 36011472 36011586 -146403656 - LTR30 LTR ERV1 -79 643 524 1641 106 7 66 chr6 36011586 36011860 -146403382 - LTR12 LTR ERV1 -456 258 1 309 270 0 0 chr6 36012760 36012834 -146402408 - MIR SINE MIR -139 123 50 400 292 81 11 chr6 36013752 36013937 -146401305 + MIR SINE MIR 8 205 -57 23 0 0 0 chr6 36014903 36014926 -146400316 + AT_rich Low_complexity Low_complexity 1 23 0 288 106 0 0 chr6 36015631 36015669 -146399573 + (TC)n Simple_repeat Simple_repeat 1 41 -6 261 0 0 0 chr6 36015669 36015698 -146399544 + (CA)n Simple_repeat Simple_repeat 1 29 0 288 106 0 0 chr6 36015698 36015706 -146399536 + (TC)n Simple_repeat Simple_repeat 40 47 0 214 331 75 81 chr6 36016647 36017001 -146398241 - L2 LINE L2 -251 3062 2715 904 192 45 17 chr6 36017695 36017872 -146397370 - MER20 DNA MER1_type -7 212 31 342 208 15 5 chr6 36018639 36018761 -146396481 + MER53 DNA DNA 1 189 0 437 311 110 65 chr6 36019978 36020790 -146394452 + L2 LINE L2 1813 2587 -726 2073 115 0 4 chr6 36020790 36021068 -146394174 + AluSc SINE Alu 1 277 -32 437 311 110 65 chr6 36021068 36021153 -146394089 + L2 LINE L2 2587 2667 -646 2178 123 0 16 chr6 36021153 36021469 -146393773 + AluSq SINE Alu 3 313 0 437 311 110 65 chr6 36021469 36021989 -146393253 + L2 LINE L2 2667 3295 -18 1605 201 7 0 chr6 36022231 36022520 -146392722 + AluJb SINE Alu 3 293 -19 278 194 14 0 chr6 36022800 36022872 -146392370 + MER116 DNA Mariner 2 74 -6 1845 158 0 7 chr6 36024788 36025092 -146390150 - AluY SINE Alu -9 302 1 26 82 0 0 chr6 36025322 36025383 -146389859 + AT_rich Low_complexity Low_complexity 1 61 0 304 337 47 32 chr6 36025528 36025718 -146389524 - MIR SINE MIR -19 243 51 747 140 70 14 chr6 36026342 36026535 -146388707 + AluJb SINE Alu 161 361 0 3250 178 117 89 chr6 36027276 36028223 -146387019 + MER52A LTR ERV1 270 1239 -516 1028 195 27 46 chr6 36028315 36028370 -146386872 - L1MC2 LINE L1 -23 6321 6266 2915 7 0 0 chr6 36028370 36028678 -146386564 + AluYa5 SINE Alu 1 308 -3 1028 195 27 46 chr6 36028678 36028884 -146386358 - L1MC2 LINE L1 -78 6266 6065 2354 189 15 22 chr6 36028887 36029341 -146385901 + LOR1b LTR ERV1 1 451 -10 254 189 0 0 chr6 36029341 36029378 -146385864 + LOR1a LTR ERV1 461 497 0 2613 183 25 0 chr6 36029382 36029864 -146385378 - L1MC2 LINE L1 -284 6060 5567 1548 155 75 19 chr6 36029866 36030131 -146385111 + MER51A LTR ERV1 3 282 -352 24 0 0 0 chr6 36030317 36030341 -146384901 + AT_rich Low_complexity Low_complexity 1 24 0 6926 116 4 9 chr6 36030363 36031337 -146383905 + LTR5 LTR ERVK 1 969 0 1169 188 43 27 chr6 36031408 36031664 -146383578 - L1MC2 LINE L1 -25 6319 6060 968 156 21 0 chr6 36031692 36031871 -146383371 - L1MC2 LINE L1 -687 5657 5465 441 288 38 6 chr6 36031884 36032044 -146383198 - L1MD3 LINE L1 0 7995 7831 * 2306 219 48 20 chr6 36032042 36032603 -146382639 - L1MD2 LINE L1 -216 6537 5961 2177 80 243 175 chr6 36032605 36033153 -146382089 + LTR12 LTR ERV1 1 585 -129 10140 125 13 13 chr6 36033172 36034694 -146380548 + HERV9 LTR ERV1 1 1522 -6877 10574 105 9 10 chr6 36034696 36036168 -146379074 + HERV9 LTR ERV1 1730 3199 -5200 8195 93 4 13 chr6 36036157 36037286 -146377956 + HERV9 LTR ERV1 7281 8399 0 * 5692 89 100 0 chr6 36037286 36038037 -146377205 + LTR12 LTR ERV1 1 826 0 1637 227 62 83 chr6 36038045 36038300 -146376942 - L1MD2 LINE L1 -682 5954 5695 2376 80 0 13 chr6 36038300 36038599 -146376643 - AluY SINE Alu -16 295 1 1637 227 62 83 chr6 36038599 36039663 -146375579 - L1MD2 LINE L1 -941 5695 4662 2874 249 105 57 chr6 36039671 36040528 -146374714 - L1MD2 LINE L1 -2079 4461 3646 2201 95 20 0 chr6 36040528 36040823 -146374419 - AluSp SINE Alu -12 301 1 2874 249 105 57 chr6 36040823 36041042 -146374200 - L1MD2 LINE L1 -2894 3646 3439 618 83 0 62 chr6 36041042 36041138 -146374104 - AluY SINE Alu -4 307 218 1548 50 0 0 chr6 36041138 36041317 -146373925 - AluY SINE Alu -126 185 7 1933 84 4 4 chr6 36041320 36041581 -146373661 - AluSc SINE Alu -48 261 1 1918 119 0 17 chr6 36041582 36041877 -146373365 - AluSg SINE Alu -20 290 1 2874 249 105 57 chr6 36041877 36043160 -146372082 - L1MD2 LINE L1 -3102 3438 1864 1878 176 0 3 chr6 36043160 36043473 -146371769 + AluJb SINE Alu 1 312 0 2874 249 105 57 chr6 36043473 36043865 -146371377 - L1MD2 LINE L1 -4676 1864 1492 320 319 62 27 chr6 36043877 36044794 -146370448 + L1 LINE L1 3339 4335 -1811 2480 152 43 14 chr6 36044794 36045208 -146370034 + MSTB LTR MaLR 1 426 0 320 319 62 27 chr6 36045208 36045260 -146369982 + L1 LINE L1 4335 4384 -1762 1983 147 0 13 chr6 36045275 36045588 -146369654 - AluSg SINE Alu -1 309 1 207 0 0 0 chr6 36045593 36045616 -146369626 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2111 93 0 7 chr6 36045619 36045898 -146369344 - AluSg1 SINE Alu -31 278 2 1041 267 47 30 chr6 36045929 36046292 -146368950 - L1MB8 LINE L1 -2 6176 5808 660 226 0 0 chr6 36046308 36046445 -146368797 - L1PB4 LINE L1 0 6156 6020 451 197 0 0 chr6 36046445 36046521 -146368721 - U1 snRNA snRNA -87 78 3 1382 227 20 3 chr6 36046526 36046825 -146368417 - L1MB8 LINE L1 -343 5823 5520 1879 168 0 0 chr6 36046891 36047195 -146368047 + AluSg SINE Alu 1 304 -6 213 153 42 0 chr6 36047596 36047668 -146367574 + (TA)n Simple_repeat Simple_repeat 1 75 0 279 310 143 50 chr6 36047985 36048285 -146366957 + MLT1L LTR MaLR 278 605 -10 689 137 0 30 chr6 36048948 36049079 -146366163 - L1MA8 LINE L1 -4 6287 6161 324 250 0 25 chr6 36050651 36050731 -146364511 - MIR SINE MIR -135 127 50 471 332 47 5 chr6 36051772 36051965 -146363277 + MIR SINE MIR 8 208 -54 288 0 0 0 chr6 36052401 36052433 -146362809 + (TA)n Simple_repeat Simple_repeat 2 33 0 1142 106 0 0 chr6 36052433 36052584 -146362658 - AluSg/x SINE Alu -7 305 155 7881 128 7 2 chr6 36052584 36053768 -146361474 - HERVK3 LTR ERVK -2089 5154 3965 25596 112 12 3 chr6 36053768 36057408 -146357834 - HERVK3 LTR ERVK -3571 3672 1 2195 173 32 37 chr6 36057408 36057842 -146357400 - LTR3 LTR ERVK 0 432 1 2429 75 0 0 chr6 36057964 36058258 -146356984 + AluY SINE Alu 1 294 -17 785 220 51 17 chr6 36058306 36058483 -146356759 - MER20 DNA MER1_type -7 212 30 338 186 23 5 chr6 36059236 36059357 -146355885 + MER53 DNA DNA 1 189 0 2465 62 0 3 chr6 36059744 36060049 -146355193 - AluY SINE Alu -7 304 1 21 36 0 0 chr6 36060052 36060080 -146355162 + AT_rich Low_complexity Low_complexity 1 28 0 196 387 11 11 chr6 36060568 36060661 -146354581 + L2 LINE L2 3216 3308 -5 885 308 152 44 chr6 36060878 36062234 -146353008 + L2 LINE L2 1813 3312 -1 2185 109 3 3 chr6 36062412 36062714 -146352528 - AluSc SINE Alu -7 302 1 1596 184 28 0 chr6 36062778 36063066 -146352176 + AluJb SINE Alu 1 296 -16 281 179 15 15 chr6 36063350 36063417 -146351825 + MER116 DNA Mariner 6 72 -8 264 310 161 23 chr6 36064758 36064932 -146350310 + MIR3 SINE MIR 7 204 -4 279 345 64 35 chr6 36065753 36065924 -146349318 - MIR SINE MIR -19 243 68 221 197 16 16 chr6 36065984 36066045 -146349197 + GA-rich Low_complexity Low_complexity 4 64 0 669 194 54 62 chr6 36066767 36067040 -146348202 + MER52A LTR ERV1 221 597 -681 2979 206 125 34 chr6 36067070 36067727 -146347515 - L1MDa LINE L1 -3891 2649 1857 1832 182 0 3 chr6 36067727 36068040 -146347202 + AluJb SINE Alu 1 312 0 2979 206 125 34 chr6 36068040 36068443 -146346799 - L1MDa LINE L1 -4683 1857 1492 234 312 63 23 chr6 36068455 36069372 -146345870 + L1M4 LINE L1 3336 4335 -1811 2458 167 33 17 chr6 36069372 36069791 -146345451 + MSTB LTR MaLR 1 426 0 234 312 63 23 chr6 36069791 36069838 -146345404 + L1M4 LINE L1 4335 4379 -1767 1121 263 42 39 chr6 36069863 36070406 -146344836 - L1M4 LINE L1 -3021 3125 2581 250 309 48 0 chr6 36071562 36071688 -146343554 - L1P5 LINE L1 -712 5439 5308 962 288 45 14 chr6 36071906 36072264 -146342978 - L1MB8 LINE L1 -2 6176 5808 599 234 7 7 chr6 36072271 36072408 -146342834 - L1PB4 LINE L1 0 6156 6020 420 197 0 0 chr6 36072410 36072481 -146342761 - U1 snRNA snRNA -92 73 3 1246 259 17 3 chr6 36072486 36072783 -146342459 - L1MB8 LINE L1 -343 5823 5523 231 36 0 0 chr6 36073228 36073269 -146341973 + (TG)n Simple_repeat Simple_repeat 1 69 0 231 36 0 0 chr6 36073269 36073297 -146341945 + (TG)n Simple_repeat Simple_repeat 2 29 0 382 314 108 35 chr6 36073579 36073920 -146341322 + MLT1L LTR MaLR 246 611 -4 698 142 0 24 chr6 36074571 36074698 -146340544 - L1MA8 LINE L1 -4 6287 6164 795 89 0 0 chr6 36075401 36075502 -146339740 - LTR12 LTR ERV1 -133 581 481 335 200 33 22 chr6 36075503 36075593 -146339649 - LTR30 LTR ERV1 -79 643 553 1837 137 7 3 chr6 36075594 36075878 -146339364 - LTR12 LTR ERV1 -429 285 1 318 263 0 25 chr6 36076771 36076851 -146338391 - MIR SINE MIR -135 127 50 440 250 228 17 chr6 36077788 36077968 -146337274 + MIR SINE MIR 8 225 -37 29 60 0 0 chr6 36078872 36078922 -146336320 + AT_rich Low_complexity Low_complexity 1 50 0 222 62 0 0 chr6 36079627 36079659 -146335583 + (TC)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr6 36079659 36079694 -146335548 + (CA)n Simple_repeat Simple_repeat 1 35 0 365 326 73 77 chr6 36080638 36080993 -146334249 - L2 LINE L2 -251 3062 2715 212 265 0 0 chr6 36081147 36081196 -146334046 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 311 295 135 39 chr6 36081199 36081585 -146333657 + Tigger4(Zombi) DNA MER2_type 348 770 -1961 818 206 36 18 chr6 36081663 36081828 -146333414 - MER20 DNA MER1_type -7 212 45 350 172 8 29 chr6 36082605 36082727 -146332515 + MER53 DNA DNA 1 189 0 180 350 12 12 chr6 36083635 36083715 -146331527 + L2 LINE L2 3229 3308 -5 823 321 112 52 chr6 36083948 36084755 -146330487 + L2 LINE L2 1813 2570 -743 2104 132 0 3 chr6 36084755 36085065 -146330177 + AluY SINE Alu 1 309 -2 823 321 112 52 chr6 36085065 36085133 -146330109 + L2 LINE L2 2570 2632 -681 2231 99 0 26 chr6 36085133 36085436 -146329806 + AluSq SINE Alu 3 297 -16 2104 114 0 0 chr6 36085438 36085775 -146329467 + AluY SINE Alu 1 337 0 823 321 112 52 chr6 36085775 36086307 -146328935 + L2 LINE L2 2632 3312 -1 1741 179 7 0 chr6 36086529 36086820 -146328422 + AluJb SINE Alu 3 295 -17 259 222 14 0 chr6 36087101 36087173 -146328069 + MER116 DNA Mariner 2 74 -6 190 359 43 11 chr6 36088547 36088639 -146326603 + MIR SINE MIR 20 114 -94 1884 151 0 23 chr6 36089231 36089530 -146325712 + AluSx SINE Alu 1 292 -20 299 365 44 22 chr6 36089842 36090023 -146325219 - MIR SINE MIR -10 252 68 404 59 0 0 chr6 36090024 36090075 -146325167 - Alu SINE Alu -262 51 1 22 0 0 0 chr6 36090200 36090222 -146325020 + AT_rich Low_complexity Low_complexity 1 22 0 187 289 0 0 chr6 36090475 36090520 -146324722 - L3 LINE CR1 -418 1159 1115 614 198 85 124 chr6 36090816 36091074 -146324168 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 36092340 36092368 -146322874 + AT_rich Low_complexity Low_complexity 1 28 0 2112 92 54 3 chr6 36093106 36093400 -146321842 - AluSc SINE Alu 0 309 1 468 198 20 0 chr6 36093794 36093895 -146321347 - MLT1A1 LTR MaLR -262 103 1 1073 135 0 59 chr6 36093895 36094117 -146321125 - L1 LINE L1 -786 5360 5152 1424 175 0 0 chr6 36094120 36094383 -146320859 + L1MB1 LINE L1 5867 6129 -60 233 256 0 33 chr6 36094366 36094456 -146320786 - L1M4 LINE L1 -3382 2764 2678 * 855 167 0 10 chr6 36094454 36094652 -146320590 + L1MA7 LINE L1 4225 4420 -1726 * 3648 165 18 47 chr6 36094636 36094766 -146320476 + L1MA7 LINE L1 4643 4775 -1516 2023 128 0 0 chr6 36094766 36095070 -146320172 + AluSg1 SINE Alu 1 304 0 3648 165 18 47 chr6 36095070 36095709 -146319533 + L1MA7 LINE L1 4775 5431 -860 2351 108 0 3 chr6 36095709 36096015 -146319227 + AluSc SINE Alu 5 309 0 3648 165 18 47 chr6 36096015 36096160 -146319082 + L1MA7 LINE L1 5431 5579 -712 2055 129 0 41 chr6 36096160 36096477 -146318765 + AluSx SINE Alu 1 304 -8 3648 165 18 47 chr6 36096477 36096785 -146318457 + L1MA7 LINE L1 5579 5894 -397 2432 88 0 0 chr6 36096785 36097091 -146318151 + AluY SINE Alu 1 306 -5 3648 165 18 47 chr6 36097091 36097459 -146317783 + L1MA7 LINE L1 5894 6288 -3 204 313 15 0 chr6 36098799 36098866 -146316376 - L2 LINE L2 -4 3309 3242 180 239 56 56 chr6 36100284 36100355 -146314887 + L2 LINE L2 3227 3297 -16 2256 121 0 0 chr6 36100361 36100666 -146314576 + AluSg SINE Alu 1 305 -5 355 262 33 48 chr6 36100712 36100922 -146314320 - L1ME3A LINE L1 0 6170 5964 504 264 8 50 chr6 36101061 36101303 -146313939 + L1M4 LINE L1 4877 5108 -1038 216 280 13 53 chr6 36101918 36101993 -146313249 - L2 LINE L2 -8 3305 3234 236 293 152 0 chr6 36102041 36102140 -146313102 + L2 LINE L2 3199 3312 -1 21 57 0 0 chr6 36102141 36102176 -146313066 + AT_rich Low_complexity Low_complexity 1 35 0 2103 143 0 3 chr6 36102196 36102586 -146312656 + AluSx SINE Alu 1 389 0 189 275 110 0 chr6 36103783 36103874 -146311368 - MIR SINE MIR -33 229 129 2126 123 7 0 chr6 36104164 36104466 -146310776 + AluSx SINE Alu 1 304 -8 193 217 192 58 chr6 36105941 36106061 -146309181 + MIR SINE MIR 6 141 -121 4955 131 65 31 chr6 36106192 36106618 -146308624 + MER4D LTR ERV1 1 411 -492 2299 89 6 13 chr6 36106618 36106932 -146308310 - AluSx SINE Alu 0 312 1 4955 131 65 31 chr6 36106932 36107378 -146307864 + MER4D LTR ERV1 411 903 0 1160 172 39 0 chr6 36107382 36107615 -146307627 - Tigger2 DNA MER2_type -16 2702 2461 3630 170 52 6 chr6 36107682 36108393 -146306849 - Tigger2 DNA MER2_type -1974 744 1 21 36 0 0 chr6 36108437 36108465 -146306777 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr6 36109367 36109394 -146305848 + AT_rich Low_complexity Low_complexity 1 27 0 3584 259 70 63 chr6 36109534 36110964 -146304278 + L1M4b LINE L1 83 1522 -5337 2318 157 64 73 chr6 36110981 36111498 -146303744 - MLT2B1 LTR ERVL -8 512 1 345 167 26 0 chr6 36111498 36111576 -146303666 + L1M4b LINE L1 1517 1596 -5263 5114 87 13 6 chr6 36111576 36112293 -146302949 + LTR30 LTR ERV1 1 722 0 1624 191 8 67 chr6 36112310 36112496 -146302746 - MLT1A1 LTR MaLR 0 365 212 2789 41 0 0 chr6 36112496 36112837 -146302405 - L1PA4 LINE L1 0 6155 5815 1624 191 8 67 chr6 36112837 36113038 -146302204 - MLT1A1 LTR MaLR -153 212 1 514 155 10 0 chr6 36113042 36113145 -146302097 + L1M4b LINE L1 1611 1714 -5141 2300 88 0 0 chr6 36113650 36113957 -146301285 + AluY SINE Alu 1 307 0 273 373 8 25 chr6 36114212 36114350 -146300892 + MIR SINE MIR 8 142 -66 497 283 67 100 chr6 36114552 36114568 -146300674 + L1ME LINE L1 4460 4475 -1671 1855 153 20 7 chr6 36114568 36114862 -146300380 + AluSx SINE Alu 1 298 -14 497 283 67 100 chr6 36114862 36115397 -146299845 + L1ME LINE L1 4475 4993 -1153 1347 168 0 4 chr6 36115409 36115659 -146299583 + L1M2 LINE L1 5417 5665 -635 38 39 0 0 chr6 36115742 36115794 -146299448 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr6 36115927 36115952 -146299290 + AT_rich Low_complexity Low_complexity 1 25 0 481 329 104 27 chr6 36115991 36116365 -146298877 + L1ME LINE L1 5352 5754 -408 1941 163 47 116 chr6 36116637 36117129 -146298113 - MER66B LTR ERV1 0 486 29 22 80 0 0 chr6 36118674 36118724 -146296518 + AT_rich Low_complexity Low_complexity 1 50 0 1128 111 50 15 chr6 36118845 36119043 -146296199 - L1MB5 LINE L1 -9 6165 5961 343 372 50 11 chr6 36119576 36119756 -146295486 - HAL1 LINE L1 -1784 723 537 21 36 0 0 chr6 36119769 36119797 -146295445 + AT_rich Low_complexity Low_complexity 1 28 0 284 233 17 0 chr6 36120871 36120931 -146294311 - MER2 DNA MER2_type 0 345 285 368 230 23 0 chr6 36120946 36121033 -146294209 - MER2 DNA MER2_type -247 98 10 380 254 0 0 chr6 36121331 36121402 -146293840 + MIR SINE MIR 30 100 -162 357 263 45 6 chr6 36121410 36121566 -146293676 - L1M4 LINE L1 -3815 2331 2170 391 236 7 107 chr6 36121566 36121706 -146293536 + MIR SINE MIR 136 261 -1 2184 102 3 0 chr6 36122336 36122643 -146292599 - AluSq SINE Alu 0 308 1 1462 261 30 15 chr6 36123144 36123782 -146291460 - L1MEc LINE L1 -3461 2754 2143 301 248 45 15 chr6 36123826 36123959 -146291283 - L1MEc LINE L1 -4414 1982 1846 1038 200 23 19 chr6 36123959 36124174 -146291068 + MER20 DNA MER1_type 1 216 -3 6458 75 55 2 chr6 36124186 36124530 -146290712 - L1PA13 LINE L1 -5 6158 5833 2153 79 68 0 chr6 36124530 36124810 -146290432 - AluY SINE Alu -12 299 1 6458 75 55 2 chr6 36124810 36126035 -146289207 - L1PA13 LINE L1 -330 5833 4561 595 186 106 0 chr6 36126112 36126225 -146289017 + FLAM_A SINE Alu 1 125 -8 2349 86 0 13 chr6 36126555 36126858 -146288384 - AluY SINE Alu -12 299 1 548 285 43 4 chr6 36127373 36127606 -146287636 + MLT1H LTR MaLR 14 299 -250 290 324 29 7 chr6 36127683 36127819 -146287423 + MLT1H LTR MaLR 409 547 -2 189 329 61 69 chr6 36128023 36128254 -146286988 - MIR SINE MIR -27 235 7 624 73 8 2 chr6 36128804 36129063 -146286179 + AluY SINE Alu 1 305 -4 369 271 10 0 chr6 36129572 36129668 -146285574 + MIR SINE MIR 58 154 -108 445 217 92 0 chr6 36129757 36129877 -146285365 - MER90 LTR ERV1 -2 612 482 1011 226 42 58 chr6 36129877 36130258 -146284984 - MLT2C1 LTR ERVL -18 379 5 1751 179 34 64 chr6 36130264 36130732 -146284510 - MER90 LTR ERV1 -140 474 21 2267 120 3 0 chr6 36131627 36131936 -146283306 + AluSg SINE Alu 1 310 0 24 0 0 0 chr6 36132661 36132685 -146282557 + AT_rich Low_complexity Low_complexity 1 24 0 1968 153 10 0 chr6 36133216 36133523 -146281719 + AluJo SINE Alu 1 310 -2 659 147 17 40 chr6 36133523 36133700 -146281542 + GA-rich Low_complexity Low_complexity 1 173 0 1045 204 62 4 chr6 36134046 36134306 -146280936 - ORSL DNA AcHobo 0 275 1 231 313 40 80 chr6 36135907 36136057 -146279185 - L2 LINE L2 -50 3222 3079 664 99 3 3 chr6 36137234 36137341 -146277901 - MER51B LTR ERV1 -74 540 212 320 285 123 15 chr6 36139301 36139431 -146275811 + MIR SINE MIR 92 235 -27 27 0 0 0 chr6 36139457 36139484 -146275758 + AT_rich Low_complexity Low_complexity 1 27 0 1963 134 10 6 chr6 36139887 36140134 -146275108 + L1MC1 LINE L1 6013 6263 -70 1879 149 41 56 chr6 36140134 36140476 -146274766 - MER1B DNA MER1_type 0 337 1 1963 134 10 6 chr6 36140476 36140542 -146274700 + L1MC1 LINE L1 6263 6327 -6 3363 30 0 0 chr6 36140542 36140938 -146274304 + L1PA4 LINE L1 5756 6152 -3 189 0 0 0 chr6 36140946 36140967 -146274275 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 345 82 0 0 chr6 36141139 36141188 -146274054 + (TG)n Simple_repeat Simple_repeat 2 50 0 1239 180 52 29 chr6 36141584 36141856 -146273386 + AluJo SINE Alu 5 282 -30 216 0 0 0 chr6 36141859 36141883 -146273359 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 250 224 0 0 chr6 36142071 36142129 -146273113 + L1MC5 LINE L1 7385 7442 -519 266 53 70 0 chr6 36142154 36142211 -146273031 + GA-rich Low_complexity Low_complexity 2 62 0 417 226 78 39 chr6 36142289 36142493 -146272749 + L1MC5 LINE L1 7641 7852 -109 214 290 48 16 chr6 36142902 36142964 -146272278 - L2 LINE L2 -75 3197 3134 876 279 24 20 chr6 36143897 36144194 -146271048 - LTR16A LTR ERVL -131 319 22 1161 122 0 0 chr6 36144305 36144461 -146270781 - AluSg SINE Alu -37 275 120 294 53 53 0 chr6 36144461 36144518 -146270724 + T-rich Low_complexity Low_complexity 1 60 0 282 73 0 0 chr6 36144575 36144616 -146270626 + (T)n Simple_repeat Simple_repeat 1 41 0 6215 44 14 23 chr6 36144617 36145412 -146269830 - SVA Other Other -3 1383 596 1073 83 0 0 chr6 36145420 36145553 -146269689 - AluSg SINE Alu -173 137 5 3307 145 61 30 chr6 36145593 36146030 -146269212 + L1MA7 LINE L1 5594 6016 -275 1657 174 32 0 chr6 36146030 36146312 -146268930 + AluJb SINE Alu 1 291 -21 3307 145 61 30 chr6 36146312 36146393 -146268849 + L1MA7 LINE L1 6016 6093 -198 1306 210 52 6 chr6 36146393 36146722 -146268520 + MER2 DNA MER2_type 1 344 0 3307 145 61 30 chr6 36146722 36146877 -146268365 + L1MA7 LINE L1 6093 6289 -2 25 31 0 0 chr6 36146945 36146977 -146268265 + AT_rich Low_complexity Low_complexity 1 32 0 234 139 0 0 chr6 36148674 36148710 -146266532 + MLT1K LTR MaLR 142 177 -411 180 97 0 0 chr6 36148768 36148799 -146266443 + (CA)n Simple_repeat Simple_repeat 2 32 0 268 266 26 35 chr6 36148956 36149069 -146266173 + (CAGAGA)n Simple_repeat Simple_repeat 3 114 0 187 338 105 0 chr6 36152133 36152266 -146262976 - L2 LINE L2 -59 3254 3108 2542 55 0 3 chr6 36153655 36153967 -146261275 + AluY SINE Alu 1 311 0 276 304 108 0 chr6 36154191 36154293 -146260949 - L2 LINE L2 0 3313 3201 331 231 132 67 chr6 36155114 36155331 -146259911 + L1M2 LINE L1 767 1237 -5612 239 360 11 0 chr6 36157216 36157305 -146257937 + MIR SINE MIR 56 145 -117 1961 246 74 4 chr6 36157305 36157833 -146257409 - Zaphod DNA AcHobo -3384 647 83 181 200 0 0 chr6 36157940 36157975 -146257267 + MIR SINE MIR 201 235 -27 2933 139 12 10 chr6 36160236 36160639 -146254603 + L1MA7 LINE L1 5425 5831 -460 1129 163 54 152 chr6 36160639 36161154 -146254088 - MER4C LTR ERV1 0 465 1 2933 139 12 10 chr6 36161154 36161266 -146253976 + L1MA7 LINE L1 5831 5941 -350 204 40 0 0 chr6 36161287 36161312 -146253930 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 22478 170 15 27 chr6 36161312 36161814 -146253428 - L1PA10 LINE L1 -22 6461 5955 2811 71 3 0 chr6 36161814 36162168 -146253074 + THE1A LTR MaLR 1 355 0 11582 97 3 19 chr6 36162168 36163443 -146251799 + THE1A-int LTR MaLR 1 1247 -333 2343 106 0 3 chr6 36163443 36163755 -146251487 + AluY SINE Alu 1 311 0 11582 97 3 19 chr6 36163755 36164084 -146251158 + THE1A-int LTR MaLR 1247 1580 0 2804 65 3 0 chr6 36164087 36164438 -146250804 + THE1A LTR MaLR 4 355 0 22478 170 15 27 chr6 36164438 36167468 -146247774 - L1PA10 LINE L1 -529 5954 2857 1931 34 0 4 chr6 36167468 36167703 -146247539 - L1PA4 LINE L1 -3 6152 5919 22478 170 15 27 chr6 36167703 36170525 -146244717 - L1PA10 LINE L1 -3626 2857 4 294 206 25 100 chr6 36170525 36170571 -146244671 - L1 LINE L1 -841 5305 5257 587 211 0 60 chr6 36170571 36170704 -146244538 - FLAM_A SINE Alu -8 125 1 294 206 25 100 chr6 36170704 36170817 -146244425 - L1 LINE L1 -889 5257 5158 243 239 0 0 chr6 36171020 36171066 -146244176 + L2 LINE L2 2608 2653 -661 * 376 310 53 26 chr6 36171044 36171234 -146244008 + MIR SINE MIR 56 252 -10 1824 126 0 0 chr6 36171253 36171524 -146243718 - L1PB3 LINE L1 -2 6152 5882 1397 220 12 0 chr6 36171524 36171870 -146243372 - L1 LINE L1 -980 5166 4817 629 198 19 31 chr6 36171828 36171990 -146243252 + L1MD2 LINE L1 6183 6342 -17 * 328 250 42 52 chr6 36172058 36172154 -146243088 + L1MEc LINE L1 1136 1230 -5166 1777 167 0 0 chr6 36172189 36172459 -146242783 - AluJo SINE Alu -18 294 25 580 276 35 4 chr6 36172486 36172740 -146242502 - L1MCa LINE L1 -5233 1193 932 1414 213 9 59 chr6 36172742 36173066 -146242176 - MER70B LTR ERVL 0 578 271 1793 198 29 0 chr6 36173489 36173838 -146241404 + MER54A LTR ERVL 4 362 -539 993 173 118 94 chr6 36173847 36174177 -146241065 + MLT1A1 LTR MaLR 28 365 0 812 262 35 21 chr6 36174323 36174613 -146240629 - HERVL LTR ERVL -1212 4442 4149 318 224 13 0 chr6 36174623 36174699 -146240543 - MER54A LTR ERVL -823 78 2 308 300 31 31 chr6 36175071 36175231 -146240011 + MLT1J2 LTR MaLR 291 450 0 198 0 0 0 chr6 36175909 36175931 -146239311 + (A)n Simple_repeat Simple_repeat 1 22 0 1848 157 15 12 chr6 36176494 36176831 -146238411 - MER44D DNA MER2_type -1 608 1 22 0 0 0 chr6 36177572 36177594 -146237648 + AT_rich Low_complexity Low_complexity 1 22 0 824 208 79 17 chr6 36177804 36178044 -146237198 - MLT1E3 LTR MaLR 0 624 370 232 319 39 10 chr6 36178044 36178251 -146236991 + L1MEc LINE L1 2503 2715 -3500 191 36 36 0 chr6 36178333 36178361 -146236881 + (CATTA)n Simple_repeat Simple_repeat 2 30 0 2059 128 7 3 chr6 36178384 36178673 -146236569 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr6 36178673 36178696 -146236546 + AT_rich Low_complexity Low_complexity 1 23 0 485 293 54 31 chr6 36178767 36178974 -146236268 - L1M4 LINE L1 -3500 2646 2445 1917 167 7 0 chr6 36178974 36179280 -146235962 - AluJb SINE Alu -4 308 1 485 293 54 31 chr6 36179280 36179590 -146235652 - L1M4 LINE L1 -3701 2445 2117 398 224 102 20 chr6 36180798 36180945 -146234297 + L1MC4 LINE L1 7758 7916 -126 34 0 0 0 chr6 36181031 36181065 -146234177 + AT_rich Low_complexity Low_complexity 1 34 0 1735 33 0 9 chr6 36181066 36181278 -146233964 - L1PA5 LINE L1 -9 6145 5936 2350 82 3 0 chr6 36181548 36181841 -146233401 - AluSq SINE Alu -19 294 1 301 291 54 14 chr6 36181848 36181996 -146233246 + L1ME4a LINE L1 5767 5920 -201 521 141 0 0 chr6 36182348 36182426 -146232816 - FLAM_C SINE Alu -33 110 33 3256 145 18 35 chr6 36182426 36185943 -146229299 + L1MA1 LINE L1 2849 6368 -3 541 262 76 24 chr6 36186938 36187148 -146228094 + L2 LINE L2 3093 3313 0 241 200 145 14 chr6 36187518 36187663 -146227579 - L1M4 LINE L1 -747 5399 5236 375 225 83 0 chr6 36187824 36187944 -146227298 - L1MCa LINE L1 -4966 1678 1549 1003 201 19 166 chr6 36187952 36188322 -146226920 + LTR41 LTR ERVL 281 537 -236 2781 108 13 55 chr6 36188322 36188794 -146226448 + MLT2A2 LTR ERVL 2 453 0 1003 201 19 166 chr6 36188794 36189000 -146226242 + LTR41 LTR ERVL 537 772 -1 451 327 100 7 chr6 36189001 36189282 -146225960 + HAL1 LINE L1 1593 1899 -608 2343 28 7 18 chr6 36189688 36189974 -146225268 + AluY SINE Alu 1 330 0 424 0 0 0 chr6 36189974 36190021 -146225221 + (TAAA)n Simple_repeat Simple_repeat 2 124 0 207 321 0 0 chr6 36190386 36190439 -146224803 - L2 LINE L2 -703 2611 2559 291 268 0 21 chr6 36191140 36191237 -146224005 - HAL1 LINE L1 -968 1539 1445 505 225 107 45 chr6 36191717 36191961 -146223281 - L1MCa LINE L1 -5395 1151 893 270 320 51 11 chr6 36192024 36192202 -146223040 - L1MCa LINE L1 -5667 875 691 268 209 29 138 chr6 36192202 36192412 -146222830 - L1M4b LINE L1 -5642 1217 1031 228 135 0 0 chr6 36192435 36192472 -146222770 + (TG)n Simple_repeat Simple_repeat 1 37 0 456 280 24 21 chr6 36192547 36192761 -146222481 - L1M4b LINE L1 -6341 514 93 883 201 168 17 chr6 36192848 36193213 -146222029 - L1MEc LINE L1 -3683 2532 2154 402 141 0 0 chr6 36193297 36193361 -146221881 - Alu SINE Alu -11 299 236 359 365 54 37 chr6 36193428 36193779 -146221463 - L1MEc LINE L1 -5670 535 179 383 265 138 33 chr6 36193824 36194005 -146221237 + L1MC4a LINE L1 6596 6795 -1013 2427 48 3 19 chr6 36194033 36194349 -146220893 + AluY SINE Alu 1 311 0 1770 284 21 40 chr6 36194417 36195314 -146219928 + L1M4 LINE L1 2258 3129 -3017 3171 65 2 62 chr6 36195314 36195794 -146219448 + L1PA8 LINE L1 5721 6171 -1 1770 284 21 40 chr6 36195794 36195902 -146219340 + L1M4 LINE L1 3129 3237 -2909 409 143 0 0 chr6 36195903 36195966 -146219276 + AluJ/FLAM SINE Alu 1 63 -249 1574 88 5 5 chr6 36195967 36196171 -146219071 - AluSp SINE Alu -109 204 1 9762 89 9 1 chr6 36197014 36198379 -146216863 + HERVFH19I LTR ERV1 6344 7719 0 3442 71 34 0 chr6 36198379 36198846 -146216396 + LTR19A LTR ERV1 1 483 -3 310 75 0 38 chr6 36198855 36198908 -146216334 - Tigger4(Zombi) DNA MER2_type -131 2600 2550 23 0 0 0 chr6 36198921 36198944 -146216298 + AT_rich Low_complexity Low_complexity 1 23 0 2943 14 0 0 chr6 36198944 36199294 -146215948 - L1HS LINE L1 -3 6152 5803 254 216 62 31 chr6 36199542 36199639 -146215603 + MIR SINE MIR 153 252 -10 669 118 31 8 chr6 36199797 36199924 -146215318 + CT-rich Low_complexity Low_complexity 3 132 0 3463 168 18 19 chr6 36199930 36200658 -146214584 - L1MB3 LINE L1 -5 6178 5452 430 284 78 56 chr6 36200662 36200894 -146214348 + L1ME3A LINE L1 5829 6065 -105 4393 127 39 88 chr6 36201834 36202838 -146212404 - Tigger3b DNA MER2_type -276 955 1 289 291 76 32 chr6 36202883 36203041 -146212201 - L1MDb LINE L1 -5507 1036 872 290 294 82 20 chr6 36203070 36203325 -146211917 - L1MDb LINE L1 -5595 935 665 427 364 44 44 chr6 36203578 36203853 -146211389 - L1MDb LINE L1 -6232 308 34 501 303 45 28 chr6 36203879 36204454 -146210788 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 36205215 36205520 -146209722 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 36205523 36205558 -146209684 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3644 86 34 9 chr6 36205559 36206115 -146209127 - LTR19B LTR ERV1 -10 570 1 265 235 12 25 chr6 36206292 36206373 -146208869 + MLT1H LTR MaLR 12 91 -458 375 260 13 87 chr6 36206719 36206869 -146208373 + L2 LINE L2 3143 3281 -32 243 146 0 0 chr6 36206878 36206919 -146208323 + (TA)n Simple_repeat Simple_repeat 1 41 0 2216 113 0 0 chr6 36206919 36207203 -146208039 - AluSx SINE Alu -28 284 1 27 49 0 0 chr6 36207203 36207244 -146207998 + AT_rich Low_complexity Low_complexity 1 41 0 1097 125 40 0 chr6 36207376 36207552 -146207690 - LTR1 LTR ERV1 0 785 603 * 1182 147 87 16 chr6 36207528 36207780 -146207462 - LTR1 LTR ERV1 -515 270 1 1259 154 32 0 chr6 36208592 36208813 -146206429 - MSTB1 LTR MaLR -53 379 152 2475 115 22 6 chr6 36208872 36209228 -146206014 - THE1B LTR MaLR 0 364 3 2780 20 0 0 chr6 36209427 36209733 -146205509 - AluY SINE Alu -5 306 1 267 31 0 0 chr6 36210016 36210048 -146205194 + (TG)n Simple_repeat Simple_repeat 2 33 0 394 373 64 16 chr6 36210488 36210802 -146204440 - L2 LINE L2 -139 3174 2846 2665 26 7 0 chr6 36211149 36211457 -146203785 + AluY SINE Alu 1 310 -1 189 0 0 0 chr6 36211750 36211771 -146203471 + (T)n Simple_repeat Simple_repeat 1 21 0 351 338 58 36 chr6 36212685 36212993 -146202249 + L1M4 LINE L1 4072 4386 -1760 481 247 124 34 chr6 36213288 36213466 -146201776 - L2 LINE L2 -6 3307 3114 23 33 0 0 chr6 36213728 36213758 -146201484 + AT_rich Low_complexity Low_complexity 1 30 0 273 313 132 60 chr6 36214236 36214501 -146200741 - L2 LINE L2 -146 3167 2884 262 275 123 29 chr6 36214501 36214672 -146200570 + MLT1J LTR MaLR 2 188 -323 408 286 58 44 chr6 36214745 36214951 -146200291 + MLT1J2 LTR MaLR 240 448 -2 485 379 37 12 chr6 36215050 36215377 -146199865 - L2 LINE L2 -526 2788 2454 201 121 0 0 chr6 36216203 36216236 -146199006 + (GA)n Simple_repeat Simple_repeat 2 34 0 283 309 21 10 chr6 36216366 36216463 -146198779 + MLT1K LTR MaLR 141 238 -350 219 267 48 27 chr6 36216621 36216767 -146198475 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 246 174 0 0 chr6 36216859 36216905 -146198337 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 293 304 24 12 chr6 36217021 36217189 -146198053 + GA-rich Low_complexity Low_complexity 2 171 0 13987 127 43 5 chr6 36218386 36220709 -146194533 + Tigger1 DNA MER2_type 1 2411 -7 494 61 0 0 chr6 36222807 36222873 -146192369 + L1P LINE L1 4919 4984 -1162 * 714 254 40 0 chr6 36222872 36223096 -146192146 - L1MDa LINE L1 -3614 2601 2369 * 2613 83 26 3 chr6 36223070 36223543 -146191699 - L1P3 LINE L1 -728 5513 5028 5086 95 3 0 chr6 36223754 36224501 -146190741 - L1P3 LINE L1 -1177 5038 4290 4010 58 4 0 chr6 36224493 36225024 -146190218 + L1PA7 LINE L1 5442 5974 -180 * 1193 103 47 0 chr6 36225026 36225240 -146190002 + L1M1 LINE L1 3079 3302 -4263 509 242 43 18 chr6 36225221 36225662 -146189580 - L1MDa LINE L1 -3824 2391 1865 * 669 207 0 36 chr6 36226140 36226178 -146189064 - FLAM_A SINE Alu -176 135 97 2087 140 6 48 chr6 36226178 36226536 -146188706 + MER61A LTR ERV1 1 343 0 669 207 0 36 chr6 36226536 36226637 -146188605 - FLAM_A SINE Alu -214 97 1 21 0 0 0 chr6 36226929 36226950 -146188292 + AT_rich Low_complexity Low_complexity 1 21 0 327 258 31 0 chr6 36227215 36227312 -146187930 + L1MEc LINE L1 1695 1794 -4602 866 202 27 6 chr6 36227349 36227532 -146187710 - MER20 DNA MER1_type -3 216 30 260 226 35 18 chr6 36227537 36227654 -146187588 + MLT1H LTR MaLR 435 549 0 198 316 51 51 chr6 36227855 36228013 -146187229 - MIR SINE MIR -26 236 79 25 51 0 0 chr6 36228040 36228079 -146187163 + AT_rich Low_complexity Low_complexity 1 39 0 1953 79 0 86 chr6 36228423 36228727 -146186515 - AluSc SINE Alu -2 307 30 406 250 10 0 chr6 36229442 36229538 -146185704 + MIR SINE MIR 58 154 -108 597 223 8 0 chr6 36229620 36229750 -146185492 - MER90 LTR ERV1 -2 573 443 934 258 36 55 chr6 36229750 36230134 -146185108 - MLT2C1 LTR ERVL -18 379 3 1927 200 41 30 chr6 36230138 36230603 -146184639 - MER90 LTR ERV1 -140 474 5 22 0 0 0 chr6 36230932 36230954 -146184288 + AT_rich Low_complexity Low_complexity 1 22 0 2245 71 0 0 chr6 36230956 36231272 -146183970 + AluY SINE Alu 1 316 0 874 226 25 25 chr6 36233392 36233529 -146181713 - ORSL DNA AcHobo 0 275 139 2424 40 7 10 chr6 36233529 36233825 -146181417 - AluY SINE Alu -16 295 1 874 226 25 25 chr6 36233825 36233962 -146181280 - ORSL DNA AcHobo -135 140 1 299 333 93 0 chr6 36235530 36235638 -146179604 - L2 LINE L2 -16 3297 3180 2114 117 21 0 chr6 36238110 36238400 -146176842 + AluSq SINE Alu 1 296 -17 33 25 0 0 chr6 36238403 36238443 -146176799 + AT_rich Low_complexity Low_complexity 1 40 0 292 289 96 30 chr6 36238926 36239061 -146176181 + MIR SINE MIR 92 235 -27 1889 132 19 12 chr6 36239507 36239826 -146175416 + L1MC1 LINE L1 6013 6333 0 26 0 0 0 chr6 36239938 36239964 -146175278 + AT_rich Low_complexity Low_complexity 1 26 0 300 91 0 0 chr6 36240000 36240044 -146175198 + (TG)n Simple_repeat Simple_repeat 2 45 0 30 0 0 0 chr6 36240282 36240312 -146174930 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr6 36240334 36240362 -146174880 + AT_rich Low_complexity Low_complexity 1 28 0 274 208 180 14 chr6 36240436 36240519 -146174723 + AluJ/FLAM SINE Alu 3 87 -215 850 80 0 80 chr6 36240519 36240657 -146174585 + AluJo/FRAM SINE Alu 156 282 -30 252 86 0 0 chr6 36240660 36240695 -146174547 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 977 235 94 52 chr6 36240879 36241398 -146173844 + L1MC5 LINE L1 7377 7917 -44 185 379 0 0 chr6 36241756 36241814 -146173428 - L2 LINE L2 -81 3191 3134 611 298 107 32 chr6 36242147 36242811 -146172431 + HAL1 LINE L1 1069 1782 -725 287 222 42 127 chr6 36242905 36243094 -146172148 + HAL1b LINE L1 712 884 -464 689 284 53 13 chr6 36243268 36243493 -146171749 - LTR16A LTR ERVL -185 265 32 3975 131 56 9 chr6 36243604 36244091 -146171151 + L1MA7 LINE L1 5594 6122 -169 1533 188 83 22 chr6 36244091 36244415 -146170827 + MER2 DNA MER2_type 1 344 0 3975 131 56 9 chr6 36244415 36244592 -146170650 + L1MA7 LINE L1 6122 6289 -2 299 216 14 40 chr6 36244918 36244992 -146170250 - MLT1J1 LTR MaLR -308 138 67 421 189 0 0 chr6 36245338 36245412 -146169830 + MER30 DNA MER1_type 157 230 0 195 100 0 0 chr6 36245948 36245978 -146169264 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 296 0 38 chr6 36246016 36246259 -146168983 + GA-rich Low_complexity Low_complexity 1 233 0 1536 114 0 0 chr6 36247686 36247888 -146167354 - AluSg/x SINE Alu -13 299 98 1906 185 72 5 chr6 36248835 36249225 -146166017 + MSTA LTR MaLR 1 416 -12 597 113 0 0 chr6 36249225 36249305 -146165937 + MSTB LTR MaLR 347 426 0 215 316 25 13 chr6 36249955 36250034 -146165208 - L2 LINE L2 -59 3254 3175 239 324 108 0 chr6 36251628 36251730 -146163512 - L2 LINE L2 0 3313 3201 197 321 75 25 chr6 36253271 36253430 -146161812 + MIR SINE MIR 90 256 -6 203 360 11 11 chr6 36254648 36254737 -146160505 + MIR SINE MIR 58 146 -62 1979 231 118 4 chr6 36254737 36255239 -146160003 - Zaphod DNA AcHobo -3384 647 89 1805 185 3 10 chr6 36255938 36256252 -146158990 - AluJo SINE Alu 0 312 1 1944 134 3 40 chr6 36256324 36256645 -146158597 + AluSq SINE Alu 1 309 -4 2342 164 17 0 chr6 36258230 36258632 -146156610 + L1MA7 LINE L1 5424 5832 -459 941 199 68 38 chr6 36258633 36258948 -146156294 - MER4C LTR ERV1 0 695 276 234 186 0 0 chr6 36259021 36259064 -146156178 + L2 LINE L2 2611 2653 -661 436 292 58 7 chr6 36259093 36259230 -146156012 + MIR SINE MIR 104 247 -15 22 0 0 0 chr6 36259230 36259252 -146155990 + AT_rich Low_complexity Low_complexity 1 22 0 1667 138 0 46 chr6 36259252 36259534 -146155708 - L1PB3 LINE L1 -4 6150 5882 1631 198 14 9 chr6 36259534 36259882 -146155360 - L1M4 LINE L1 -980 5166 4817 745 169 58 35 chr6 36259840 36260012 -146155230 + L1MD2 LINE L1 6183 6358 -1 * 308 250 11 23 chr6 36260061 36260149 -146155093 + L1MCa LINE L1 1138 1224 -5202 1314 205 51 18 chr6 36260174 36260478 -146154764 - AluJo SINE Alu 0 314 2 745 269 40 4 chr6 36260495 36260748 -146154494 - L1MCa LINE L1 -5233 1193 932 1638 168 9 87 chr6 36260750 36261084 -146154158 - MER70B LTR ERVL 0 578 271 1580 167 106 73 chr6 36261232 36261504 -146153738 - MER4A LTR ERV1 -21 444 281 2286 105 0 22 chr6 36261504 36261819 -146153423 + AluSx SINE Alu 1 308 -4 1580 167 106 73 chr6 36261819 36262110 -146153132 - MER4A LTR ERV1 -184 281 1 263 320 77 34 chr6 36262355 36262589 -146152653 + ERVL LTR ERVL 5137 5380 -384 344 315 31 31 chr6 36262723 36262885 -146152357 + MLT1J2 LTR MaLR 289 450 0 21 0 0 0 chr6 36263568 36263589 -146151653 + AT_rich Low_complexity Low_complexity 1 21 0 1748 125 30 106 chr6 36264137 36264504 -146150738 - MER44D DNA MER2_type 0 609 1 2007 124 10 3 chr6 36265202 36265501 -146149741 + LTR43 LTR ERV1 302 602 0 27 49 0 0 chr6 36265501 36265542 -146149700 + AT_rich Low_complexity Low_complexity 1 41 0 1978 222 69 49 chr6 36265720 36266233 -146149009 - MLT1E3 LTR MaLR 0 624 96 3418 109 45 52 chr6 36266233 36266748 -146148494 + MER9 LTR ERVK 1 511 0 1978 222 69 49 chr6 36266748 36266843 -146148399 - MLT1E3 LTR MaLR -528 96 4 404 250 75 8 chr6 36266859 36266979 -146148263 - MLT1E3-int LTR MaLR -5 1730 1603 2092 97 0 8 chr6 36267444 36267711 -146147531 - AluSx SINE Alu -22 290 26 1534 219 98 23 chr6 36267737 36268135 -146147107 - MSTC LTR MaLR 0 428 1 5522 237 97 51 chr6 36268135 36268716 -146146526 - MSTC-int LTR MaLR 0 1735 1182 8463 51 1 0 chr6 36268716 36269684 -146145558 - LTR5 LTR ERVK 0 969 1 5522 237 97 51 chr6 36269684 36270759 -146144483 - MSTC-int LTR MaLR -553 1182 2 1351 206 152 51 chr6 36270761 36271150 -146144092 - MSTC LTR MaLR 0 428 1 692 225 19 43 chr6 36271676 36271885 -146143357 - L1MDa LINE L1 -4147 2393 2190 882 125 0 0 chr6 36271895 36272015 -146143227 + MSTB LTR MaLR 8 127 -299 2707 39 0 0 chr6 36272104 36272413 -146142829 - AluY SINE Alu -2 309 1 4524 97 10 0 chr6 36272416 36273017 -146142225 - L1PA13 LINE L1 0 6163 5557 4111 194 35 17 chr6 36273017 36273841 -146141401 + L1P LINE L1 1460 2298 -3848 379 256 37 30 chr6 36273901 36274065 -146141177 - L1MDa LINE L1 -3834 2706 2542 405 245 87 72 chr6 36275041 36275249 -146139993 + L2 LINE L2 3103 3313 0 238 223 176 7 chr6 36275615 36275763 -146139479 - L1M4 LINE L1 -747 5399 5227 225 220 9 73 chr6 36275871 36275980 -146139262 - L1MDa LINE L1 -4925 1615 1514 1207 44 0 0 chr6 36277136 36277272 -146137970 + AluSq/x SINE Alu 1 136 -177 194 330 70 35 chr6 36277639 36277754 -146137488 + MIR SINE MIR 84 202 -60 39 38 0 38 chr6 36278124 36278157 -146137085 + AT_rich Low_complexity Low_complexity 1 34 -42 6335 72 65 44 chr6 36278157 36279942 -146135300 + L1PA11 LINE L1 4368 6169 -5 39 38 0 38 chr6 36279942 36279987 -146135255 + AT_rich Low_complexity Low_complexity 34 76 0 352 235 107 7 chr6 36280018 36280167 -146135075 - MIR SINE MIR -25 237 74 289 309 41 16 chr6 36281029 36281152 -146134090 - L2 LINE L2 -9 3304 3179 381 284 115 0 chr6 36281175 36281323 -146133919 - L2 LINE L2 -324 2989 2825 1721 155 24 17 chr6 36281617 36281908 -146133334 + AluJo SINE Alu 1 293 -19 628 176 0 73 chr6 36283019 36283155 -146132087 - FLAM_C SINE Alu -6 137 12 4022 182 72 25 chr6 36283225 36284000 -146131242 - MER21B LTR ERV1 -51 812 1 258 300 50 17 chr6 36286218 36286338 -146128904 + L1MCc LINE L1 17 140 -6283 248 226 98 98 chr6 36286417 36286581 -146128661 + L1MCc LINE L1 263 426 -5997 1538 100 132 24 chr6 36286742 36287035 -146128207 - AluSx SINE Alu 0 325 6 27 0 0 0 chr6 36287167 36287194 -146128048 + AT_rich Low_complexity Low_complexity 1 27 0 192 238 0 0 chr6 36287194 36287236 -146128006 - MIR SINE MIR -16 246 205 691 167 42 22 chr6 36287246 36287461 -146127781 + AluJb SINE Alu 4 294 -18 210 286 200 0 chr6 36287462 36287567 -146127675 - MIR SINE MIR -126 136 11 346 347 66 26 chr6 36289034 36289412 -146125830 - L2 LINE L2 -463 2851 2459 2185 184 62 44 chr6 36289533 36289919 -146125323 + MLT1D LTR MaLR 1 399 -106 1177 264 101 10 chr6 36289919 36290317 -146124925 - MER57B LTR ERV1 0 434 1 2185 184 62 44 chr6 36290317 36290426 -146124816 + MLT1D LTR MaLR 399 505 0 366 366 0 7 chr6 36290440 36290582 -146124660 + MIR SINE MIR 8 148 -114 1045 218 159 37 chr6 36290662 36290988 -146124254 - Tigger5 DNA MER2_type 0 2323 1 35 54 0 0 chr6 36291020 36291076 -146124166 + AT_rich Low_complexity Low_complexity 1 56 0 2316 103 0 3 chr6 36291095 36291396 -146123846 - AluY SINE Alu 0 311 12 1139 202 54 4 chr6 36292456 36292714 -146122528 + L1M4 LINE L1 3930 4200 -1946 463 222 96 7 chr6 36292708 36292843 -146122399 + L1M4 LINE L1 4992 5138 -1008 * 2402 174 71 6 chr6 36292939 36293779 -146121463 - L1MD1 LINE L1 -3 6239 5350 * 18178 191 30 14 chr6 36293768 36294917 -146120325 - L1PA13 LINE L1 -1478 5319 4190 279 0 0 0 chr6 36294917 36294948 -146120294 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 18178 191 30 14 chr6 36294948 36299017 -146116225 - L1PA13 LINE L1 -2607 4190 1 318 311 128 27 chr6 36299024 36299243 -146115999 + L1M4c LINE L1 1412 1652 -4732 1699 187 49 11 chr6 36299256 36299603 -146115639 + MLT1A1 LTR MaLR 6 365 0 5419 199 60 24 chr6 36299681 36301033 -146114209 - Charlie1a DNA MER1_type -16 1439 3 2320 91 0 0 chr6 36301424 36301710 -146113532 - AluSc SINE Alu -21 288 3 2456 194 47 112 chr6 36301751 36301794 -146113448 + L1MC5 LINE L1 6634 6678 -1283 2957 137 35 12 chr6 36301794 36302276 -146112966 + LTR42 LTR ERVL 3 495 0 2456 194 47 112 chr6 36302276 36303186 -146112056 + L1MC5 LINE L1 6678 7525 -436 227 289 107 44 chr6 36303256 36303415 -146111827 + L1ME3A LINE L1 5965 6133 -37 190 328 17 0 chr6 36306387 36306445 -146108797 - L2 LINE L2 -213 3059 3001 634 151 63 32 chr6 36307089 36307215 -146108027 + LTR42 LTR ERVL 26 155 -340 702 117 0 0 chr6 36308451 36308554 -146106688 - L1MA6 LINE L1 -5 6295 6193 1777 141 24 0 chr6 36308554 36308844 -146106398 + L1MA6 LINE L1 5780 6076 -224 774 173 73 0 chr6 36308964 36309114 -146106128 + MLT1A1 LTR MaLR 1 161 -204 1396 207 4 22 chr6 36309123 36309398 -146105844 + AluJo SINE Alu 11 280 -32 204 40 0 0 chr6 36309398 36309423 -146105819 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 628 173 32 0 chr6 36309771 36309900 -146105342 + MSTB2 LTR MaLR 236 457 0 304 212 162 10 chr6 36311441 36311540 -146103702 - MIR SINE MIR -77 185 72 330 273 75 0 chr6 36312958 36313119 -146102123 - L1P LINE L1 -2340 3806 3634 207 0 0 0 chr6 36313152 36313175 -146102067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1852 139 33 0 chr6 36313177 36313450 -146101792 - AluJo SINE Alu -30 282 1 2297 116 0 0 chr6 36313537 36313839 -146101403 - AluSx SINE Alu -10 302 1 216 0 0 0 chr6 36314045 36314069 -146101173 + (T)n Simple_repeat Simple_repeat 1 24 0 229 309 104 30 chr6 36314713 36315147 -146100095 - L1M4 LINE L1 -3546 2600 2135 24 67 0 0 chr6 36315233 36315278 -146099964 + AT_rich Low_complexity Low_complexity 1 45 0 824 283 65 40 chr6 36315651 36316050 -146099192 + L1ME4a LINE L1 5404 5812 -1996 22 0 0 0 chr6 36316050 36316072 -146099170 + AT_rich Low_complexity Low_complexity 1 22 0 236 260 40 30 chr6 36316227 36316327 -146098915 + L1MC4a LINE L1 6075 6175 -1633 304 222 12 0 chr6 36316330 36316411 -146098831 - L2 LINE L2 -1477 1837 1756 399 299 43 27 chr6 36316413 36316600 -146098642 + MIR SINE MIR 66 255 -7 810 251 70 4 chr6 36318644 36318887 -146096355 + MIR SINE MIR 2 260 -2 427 237 53 8 chr6 36319045 36319176 -146096066 + L1ME4a LINE L1 5962 6098 -23 198 0 0 0 chr6 36319292 36319314 -146095928 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 250 360 64 23 chr6 36321655 36321827 -146093415 + L2 LINE L2 3079 3257 -15 1576 217 50 39 chr6 36321866 36322323 -146092919 + L1MC5 LINE L1 7012 7473 -488 180 77 0 0 chr6 36322347 36322373 -146092869 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 1324 202 27 60 chr6 36322373 36322819 -146092423 + L1MC5 LINE L1 7483 7913 -48 5130 166 40 20 chr6 36323766 36324350 -146090892 + L1MB3 LINE L1 4986 5557 -626 2157 130 75 20 chr6 36324350 36324695 -146090547 + THE1B LTR MaLR 1 364 0 5130 166 40 20 chr6 36324695 36325295 -146089947 + L1MB3 LINE L1 5557 6183 0 297 170 19 0 chr6 36325589 36325642 -146089600 + L1M3 LINE L1 5742 5795 -388 2174 145 31 0 chr6 36327089 36327413 -146087829 - MER7A DNA MER2_type -14 332 1 332 164 0 60 chr6 36327534 36327601 -146087641 - MER96 DNA MER1_type? -111 64 2 180 0 0 0 chr6 36329081 36329101 -146086141 + (A)n Simple_repeat Simple_repeat 1 20 0 2415 68 0 3 chr6 36329742 36330037 -146085205 + AluSq SINE Alu 1 294 -19 1695 100 0 0 chr6 36331854 36332074 -146083168 - AluSg/x SINE Alu -12 298 79 272 285 109 0 chr6 36333986 36334134 -146081108 - MIR SINE MIR -57 205 44 506 288 34 39 chr6 36336715 36336920 -146078322 + MIR SINE MIR 3 206 -56 914 126 0 0 chr6 36336956 36337083 -146078159 + FLAM_C SINE Alu 1 127 -16 1959 162 10 0 chr6 36337154 36337462 -146077780 + AluJb SINE Alu 1 311 -1 227 264 0 0 chr6 36337867 36337920 -146077322 + (CA)n Simple_repeat Simple_repeat 1 53 0 2309 64 0 34 chr6 36340076 36340372 -146074870 + AluY SINE Alu 1 286 -25 231 114 0 0 chr6 36340388 36340423 -146074819 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 500 222 47 74 chr6 36342197 36342407 -146072835 + MIR3 SINE MIR 1 203 -5 321 67 0 0 chr6 36342541 36342590 -146072652 + (GA)n Simple_repeat Simple_repeat 1 49 0 521 241 154 25 chr6 36345821 36345983 -146069259 + MIR3 SINE MIR 2 184 -24 333 183 192 8 chr6 36346625 36346745 -146068497 + MIR3 SINE MIR 63 204 -4 2136 122 10 3 chr6 36347535 36347839 -146067403 + AluSx SINE Alu 1 306 -6 286 177 32 0 chr6 36348153 36348215 -146067027 + MIR SINE MIR 120 183 -79 267 278 0 111 chr6 36349209 36349353 -146065889 + MER94 DNA DNA 3 130 -4 1789 162 0 53 chr6 36349371 36349692 -146065550 + AluJb SINE Alu 2 305 -7 392 272 152 38 chr6 36349707 36349891 -146065351 - MER63A DNA MER1_type -4 206 2 1998 135 3 7 chr6 36350757 36351054 -146064188 + AluJo SINE Alu 17 312 0 304 300 138 7 chr6 36351072 36351214 -146064028 - MIR SINE MIR -86 122 7 223 254 84 0 chr6 36351390 36351461 -146063781 + MIR3 SINE MIR 120 196 -12 431 280 58 78 chr6 36351661 36352107 -146063135 + L1ME LINE L1 51 487 -5583 2275 84 27 3 chr6 36352126 36352424 -146062818 + AluSq SINE Alu 1 305 -8 437 240 97 77 chr6 36352645 36352841 -146062401 - MER63A DNA MER1_type -1 209 10 1851 151 44 0 chr6 36353082 36353380 -146061862 + AluJb SINE Alu 1 311 -1 625 192 0 0 chr6 36353505 36353609 -146061633 + AluJb SINE Alu 190 293 -19 1111 284 39 46 chr6 36353688 36354476 -146060766 + L1M4 LINE L1 3005 3787 -2359 1651 135 0 39 chr6 36354476 36354735 -146060507 + AluJo SINE Alu 40 288 -24 195 139 0 0 chr6 36354740 36354776 -146060466 + (TAA)n Simple_repeat Simple_repeat 3 38 0 309 293 93 46 chr6 36354776 36355035 -146060207 + L1M4 LINE L1 3781 4051 -2095 1112 164 14 51 chr6 36355097 36355311 -146059931 + AluJo SINE Alu 91 296 -16 2750 129 43 0 chr6 36356003 36356399 -146058843 - MLT2D LTR ERVL 0 414 2 252 296 60 55 chr6 36356706 36356905 -146058337 + HERV16 LTR ERVL 375 574 -4422 282 161 177 16 chr6 36356985 36357047 -146058195 - MLT1F1 LTR MaLR -1 566 495 527 281 15 10 chr6 36357053 36357249 -146057993 + L1MC4 LINE L1 7702 7898 -144 * 543 232 30 24 chr6 36357246 36357414 -146057828 + L1ME3 LINE L1 5743 5911 -251 446 203 0 62 chr6 36357414 36357531 -146057711 - MLT1H1 LTR MaLR 0 555 433 572 291 62 29 chr6 36357587 36357797 -146057445 + LTR67 LTR ERVL 6 222 -335 192 77 0 0 chr6 36357885 36357911 -146057331 + (T)n Simple_repeat Simple_repeat 1 26 0 505 207 117 27 chr6 36358154 36358342 -146056900 - LTR37B LTR ERV1 -65 403 199 578 206 46 0 chr6 36360046 36360177 -146055065 + Charlie2 DNA MER1_type 1855 1991 -871 1314 167 9 17 chr6 36360182 36360415 -146054827 + AluJo SINE Alu 42 272 -40 8396 201 71 59 chr6 36360415 36362583 -146052659 + L1MDa LINE L1 379 2520 -4020 2145 96 10 36 chr6 36362583 36362886 -146052356 + AluSc SINE Alu 2 296 -13 8396 201 71 59 chr6 36362886 36363390 -146051852 + L1MDa LINE L1 2520 3017 -3523 2802 66 28 0 chr6 36363390 36363752 -146051490 - L1PA13 LINE L1 0 6163 5792 2185 112 30 7 chr6 36363762 36363934 -146051308 - AluSq SINE Alu -11 302 119 351 0 0 0 chr6 36363934 36363973 -146051269 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2185 112 30 7 chr6 36363973 36364095 -146051147 - AluSq SINE Alu -194 119 1 8396 201 71 59 chr6 36364095 36364412 -146050830 + L1MDa LINE L1 3025 3337 -3203 6103 62 8 0 chr6 36364412 36365141 -146050101 - L1PA10 LINE L1 -17 6151 5417 8396 201 71 59 chr6 36365141 36366454 -146048788 + L1MDa LINE L1 3337 4760 -1780 2588 49 20 0 chr6 36366454 36366759 -146048483 - AluY SINE Alu 0 311 1 8396 201 71 59 chr6 36366759 36367089 -146048153 + L1MDa LINE L1 4760 5085 -1455 2637 48 0 10 chr6 36369013 36369327 -146045915 - AluY SINE Alu 0 311 1 1091 222 6 88 chr6 36370686 36371038 -146044204 + L1MDa LINE L1 5073 5395 -1145 * 1510 151 8 4 chr6 36371038 36371277 -146043965 + AluJo SINE Alu 58 297 -15 3416 151 26 86 chr6 36371277 36371827 -146043415 + L1MD1 LINE L1 4932 5400 -842 2237 108 7 0 chr6 36371827 36372124 -146043118 + AluSp SINE Alu 1 299 -14 3416 151 26 86 chr6 36372124 36372603 -146042639 + L1MD1 LINE L1 5400 5906 -336 550 159 0 0 chr6 36372603 36372691 -146042551 + AluJ/FRAM SINE Alu 220 307 -5 450 216 43 0 chr6 36372692 36372808 -146042434 + L1MDa LINE L1 5389 5509 -1031 2131 123 10 0 chr6 36372812 36373120 -146042122 + AluSx SINE Alu 1 311 -1 1417 160 24 86 chr6 36373148 36373485 -146041757 + L1MD1 LINE L1 5916 6231 -11 235 240 13 40 chr6 36373486 36373561 -146041681 + Charlie2 DNA MER1_type 2781 2853 -9 2062 165 43 8 chr6 36373817 36374192 -146041050 + MLT1B LTR MaLR 3 390 0 697 267 117 6 chr6 36374438 36374821 -146040421 + LTR16C LTR ERVL 37 487 -4 934 195 0 0 chr6 36375404 36375584 -146039658 - AluJb SINE Alu 0 308 129 806 161 44 7 chr6 36375600 36375737 -146039505 - FLAM_C SINE Alu 0 143 2 2407 65 0 3 chr6 36376061 36376354 -146038888 - AluY SINE Alu -19 292 1 457 57 14 14 chr6 36376801 36376871 -146038371 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 254 28 0 28 chr6 36378751 36378787 -146036455 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1575 221 49 44 chr6 36379223 36379613 -146035629 + MSTD LTR MaLR 5 396 0 1998 157 3 0 chr6 36379706 36380012 -146035230 - AluJb SINE Alu -4 308 2 1080 307 46 28 chr6 36380463 36381118 -146034124 - L1ME3 LINE L1 -177 5985 5319 673 269 135 57 chr6 36381133 36381941 -146033301 - L1ME3 LINE L1 -873 5273 4379 2797 129 18 34 chr6 36381941 36382157 -146033085 - Tigger2a DNA MER2_type -2274 434 227 1806 151 24 0 chr6 36382157 36382448 -146032794 + AluJo SINE Alu 1 298 -14 2797 129 18 34 chr6 36382448 36382672 -146032570 - Tigger2a DNA MER2_type -2481 227 1 673 269 135 57 chr6 36382672 36382812 -146032430 - L1ME3 LINE L1 -1767 4379 4251 521 233 89 50 chr6 36383700 36383902 -146031340 + MER112 DNA MER1_type 37 246 -14 2061 114 0 0 chr6 36384050 36384339 -146030903 + AluSx SINE Alu 6 294 -18 203 308 0 31 chr6 36384750 36384815 -146030427 + C-rich Low_complexity Low_complexity 3 65 0 639 193 76 10 chr6 36386510 36386778 -146028464 + MER69 DNA AcHobo 505 830 -1696 4178 208 96 46 chr6 36388778 36389270 -146025972 - Charlie2b DNA MER1_type -103 2759 2293 1863 133 7 40 chr6 36389270 36389570 -146025672 + AluJb SINE Alu 1 290 -22 4178 208 96 46 chr6 36389570 36389625 -146025617 - Charlie2b DNA MER1_type -569 2293 2242 1795 157 132 0 chr6 36389625 36389944 -146025298 - MER46B DNA MER2_type 0 236 1 4178 208 96 46 chr6 36389944 36391229 -146024013 - Charlie2b DNA MER1_type -620 2242 829 445 173 0 0 chr6 36391229 36391304 -146023938 + AluJ/FLAM SINE Alu 1 75 -237 1158 241 102 64 chr6 36391349 36391568 -146023674 - Charlie2b DNA MER1_type -1943 839 630 715 191 0 59 chr6 36391568 36391704 -146023538 + FLAM_A SINE Alu 5 132 -1 1158 241 102 64 chr6 36391704 36391901 -146023341 - Charlie2b DNA MER1_type -2152 630 407 801 169 0 82 chr6 36391901 36392085 -146023157 - MER20 DNA MER1_type 0 219 51 2904 105 60 35 chr6 36392085 36392569 -146022673 + L1MC2 LINE L1 5847 6342 -2 1157 202 106 19 chr6 36393756 36394076 -146021166 + MSTD LTR MaLR 1 396 0 1181 176 133 50 chr6 36394110 36394411 -146020831 - MER44D DNA MER2_type 0 609 14 266 325 45 39 chr6 36395140 36395294 -146019948 - L2 LINE L2 -199 3073 2919 1679 160 35 0 chr6 36395344 36395631 -146019611 + AluJb SINE Alu 1 297 -15 5778 165 69 61 chr6 36395930 36396081 -146019161 - Charlie1 DNA MER1_type -557 2204 2056 1575 189 3 17 chr6 36396081 36396372 -146018870 + AluJo SINE Alu 3 289 -23 5778 165 69 61 chr6 36396372 36398282 -146016960 - Charlie1 DNA MER1_type -705 2056 1 351 310 29 12 chr6 36398294 36398465 -146016777 + L1M4 LINE L1 4910 5083 -1063 286 288 73 80 chr6 36398459 36398861 -146016381 + L1M4 LINE L1 5475 5879 -305 * 315 0 0 0 chr6 36399092 36399127 -146016115 + (TA)n Simple_repeat Simple_repeat 2 36 0 293 330 26 35 chr6 36399633 36399748 -146015494 + MIR3 SINE MIR 68 181 -27 302 390 19 0 chr6 36399947 36400052 -146015190 - L2 LINE L2 -17 3255 3149 408 266 11 0 chr6 36400582 36400676 -146014566 + Charlie7 DNA MER1_type 1 95 -2517 2360 93 0 0 chr6 36401101 36401402 -146013840 + AluSg SINE Alu 1 301 -9 426 309 40 27 chr6 36401632 36401781 -146013461 - MER5A DNA MER1_type -3 186 36 234 0 0 0 chr6 36403341 36403367 -146011875 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 437 329 93 33 chr6 36405177 36405639 -146009603 + L1MDa LINE L1 1226 1699 -4841 1440 96 59 36 chr6 36405679 36405899 -146009343 + AluSx SINE Alu 3 227 -85 356 325 63 0 chr6 36405932 36406123 -146009119 + HAL1 LINE L1 1451 1653 -854 7971 169 19 24 chr6 36406690 36408190 -146007052 - L1PA13 LINE L1 -5 6158 4659 2105 96 3 14 chr6 36408190 36408483 -146006759 + AluSp SINE Alu 1 290 -23 7971 169 19 24 chr6 36408483 36409219 -146006023 - L1PA13 LINE L1 -1504 4659 3921 2124 105 7 24 chr6 36409335 36409631 -146005611 - AluSx SINE Alu -21 291 1 2018 134 3 0 chr6 36409638 36409961 -146005281 - AluSq SINE Alu 0 324 1 2339 109 0 6 chr6 36409994 36410307 -146004935 + AluSq SINE Alu 1 311 -2 336 301 22 11 chr6 36410354 36410537 -146004705 + L1MDa LINE L1 2819 3003 -3537 864 235 38 31 chr6 36410606 36410895 -146004347 + L1MC4 LINE L1 7585 7875 -167 351 171 198 36 chr6 36411028 36411139 -146004103 + L1MC4 LINE L1 7914 8042 0 601 258 99 22 chr6 36411154 36411468 -146003774 + L1MDa LINE L1 3274 3611 -2929 406 300 58 28 chr6 36411483 36411880 -146003362 + L1MDa LINE L1 3989 4397 -2143 2623 212 35 48 chr6 36411893 36412513 -146002729 + L1MDa LINE L1 26 725 -5815 2402 141 72 27 chr6 36412511 36413022 -146002220 + L1MDa LINE L1 1988 2521 -4019 * 1117 199 35 100 chr6 36413028 36413413 -146001829 + MLT1A2 LTR MaLR 1 363 -11 807 199 6 0 chr6 36413427 36413583 -146001659 + L1MA3 LINE L1 6147 6303 -2 231 170 0 0 chr6 36413599 36413646 -146001596 + L1MDa LINE L1 2530 2576 -3964 255 175 0 0 chr6 36413654 36413694 -146001548 + Alu SINE Alu 1 40 -261 1794 218 22 91 chr6 36413709 36413765 -146001477 + L1MDa LINE L1 2605 2663 -3877 1842 144 44 13 chr6 36413765 36414063 -146001179 + AluSx SINE Alu 1 307 -5 1794 218 22 91 chr6 36414063 36414423 -146000819 + L1MDa LINE L1 2663 2915 -3625 2380 65 7 10 chr6 36414423 36414733 -146000509 + AluY SINE Alu 1 309 -2 1794 218 22 91 chr6 36414733 36415028 -146000214 + L1MDa LINE L1 2915 3229 -3311 3948 140 59 26 chr6 36415042 36415736 -145999506 - L1PA15 LINE L1 -113 6052 5336 1074 201 44 17 chr6 36415704 36415997 -145999245 + L1MD1 LINE L1 3069 3369 -3171 * 7328 97 11 18 chr6 36415994 36416275 -145998967 + L1MA1 LINE L1 5196 5477 -825 2235 107 0 0 chr6 36416275 36416566 -145998676 + AluSx SINE Alu 1 291 -21 7328 97 11 18 chr6 36416566 36417392 -145997850 + L1MA1 LINE L1 5477 6295 -7 356 162 192 0 chr6 36417389 36417488 -145997754 + L1MD1 LINE L1 3317 3434 -3106 * 714 88 0 39 chr6 36417495 36417597 -145997645 + FLAM_A SINE Alu 33 130 -12 272 197 46 37 chr6 36417603 36417676 -145997566 + L1MD1 LINE L1 3441 3512 -3028 1836 149 0 4 chr6 36417676 36417951 -145997291 + AluSx SINE Alu 1 274 -38 272 197 46 37 chr6 36417951 36418039 -145997203 + L1MD1 LINE L1 3512 3672 -2868 4563 155 66 48 chr6 36418180 36418502 -145996740 + L1MD1 LINE L1 5360 5675 -961 1745 126 152 4 chr6 36418502 36418765 -145996477 + AluSx SINE Alu 1 302 0 4563 155 66 48 chr6 36418765 36418963 -145996279 + L1MD1 LINE L1 5675 5868 -768 2456 74 0 0 chr6 36418963 36419261 -145995981 + AluY SINE Alu 1 298 -13 4563 155 66 48 chr6 36419261 36419975 -145995267 + L1MD1 LINE L1 5868 6617 -19 264 315 144 17 chr6 36419954 36420172 -145995070 + L1MDa LINE L1 4400 4667 -1873 * 210 118 0 0 chr6 36420172 36420206 -145995036 + (CAA)n Simple_repeat Simple_repeat 1 34 0 264 315 144 17 chr6 36420206 36420285 -145994957 + L1MDa LINE L1 4667 4735 -1805 819 192 40 48 chr6 36420300 36420568 -145994674 + L1MB2 LINE L1 5223 5489 -682 373 157 0 22 chr6 36420568 36420657 -145994585 + GA-rich Low_complexity Low_complexity 3 89 0 3871 168 18 6 chr6 36420658 36421324 -145993918 + L1MB2 LINE L1 5491 6164 -7 259 329 48 28 chr6 36421328 36421617 -145993625 + L1MDa LINE L1 4712 5006 -1534 557 302 77 25 chr6 36421794 36422224 -145993018 + LTR33 LTR ERVL 10 513 -8 258 259 17 0 chr6 36422904 36422962 -145992280 + L3 LINE CR1 1503 1561 -16 302 241 28 0 chr6 36423044 36423189 -145992053 + CT-rich Low_complexity Low_complexity 1 149 0 222 37 0 0 chr6 36423204 36423231 -145992011 + (CA)n Simple_repeat Simple_repeat 1 27 0 2292 106 3 6 chr6 36423662 36423974 -145991268 + AluSq SINE Alu 1 311 -2 186 43 0 0 chr6 36424066 36424089 -145991153 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 527 297 18 6 chr6 36424546 36424711 -145990531 + MIR SINE MIR 86 252 -10 438 208 17 42 chr6 36424873 36424993 -145990249 - MIR SINE MIR -4 258 142 680 75 0 0 chr6 36427496 36427576 -145987666 - MADE1 DNA Mariner 0 80 1 440 312 32 48 chr6 36428619 36428805 -145986437 - MER5A DNA MER1_type -6 183 1 205 281 122 0 chr6 36428892 36428974 -145986268 + MER5B DNA MER1_type 27 118 -60 231 74 74 0 chr6 36429592 36429646 -145985596 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1475 219 119 29 chr6 36429682 36430103 -145985139 + MER21B LTR ERV1 23 481 -382 1163 124 88 0 chr6 36430119 36430313 -145984929 + L1MA5A LINE L1 6068 6278 -19 1231 259 37 25 chr6 36430313 36430668 -145984574 + MER21B LTR ERV1 454 812 -51 498 297 101 0 chr6 36431029 36431167 -145984075 - L2 LINE L2 -4 3268 3117 24 0 0 0 chr6 36432485 36432509 -145982733 + AT_rich Low_complexity Low_complexity 1 24 0 5137 124 22 2 chr6 36432509 36433297 -145981945 - L1PA15 LINE L1 -6 6159 5357 1881 140 13 48 chr6 36433325 36433639 -145981603 - AluSx SINE Alu -9 303 1 2487 72 7 0 chr6 36434187 36434491 -145980751 + AluSx SINE Alu 1 306 -6 216 313 0 0 chr6 36434586 36434650 -145980592 + (CA)n Simple_repeat Simple_repeat 2 65 0 385 315 10 0 chr6 36436426 36436545 -145978697 - MIR SINE MIR -62 146 30 514 287 61 45 chr6 36436545 36437136 -145978106 + L1M4 LINE L1 4336 5561 -593 568 178 0 10 chr6 36437547 36437648 -145977594 - MIR3 SINE MIR -28 180 81 355 221 0 26 chr6 36437907 36437984 -145977258 - MIR SINE MIR -15 247 173 328 241 62 45 chr6 36438063 36438175 -145977067 - L1M4 LINE L1 -618 5556 5443 509 252 41 27 chr6 36438175 36438322 -145976920 - MIR SINE MIR -98 164 16 255 61 0 0 chr6 36439476 36439509 -145975733 + (TCC)n Simple_repeat Simple_repeat 1 33 0 218 216 20 20 chr6 36440858 36440909 -145974333 - L2 LINE L2 0 3313 3263 2050 119 20 3 chr6 36441439 36441732 -145973510 + AluSg SINE Alu 1 298 -12 1930 133 14 3 chr6 36441912 36442197 -145973045 + AluJo SINE Alu 1 288 -24 22 25 0 25 chr6 36442197 36442209 -145973033 + AT_rich Low_complexity Low_complexity 1 12 -27 2272 106 0 6 chr6 36442209 36442520 -145972722 + AluSx SINE Alu 1 309 -3 22 25 0 25 chr6 36442520 36442547 -145972695 + AT_rich Low_complexity Low_complexity 12 39 0 599 326 101 0 chr6 36442557 36442735 -145972507 + MER91A DNA MER1_type 1 196 0 191 306 162 36 chr6 36443064 36443175 -145972067 - MIR3 SINE MIR -32 176 52 454 246 172 0 chr6 36443207 36443341 -145971901 + MIR SINE MIR 52 208 -54 233 358 57 24 chr6 36444094 36444217 -145971025 - L2 LINE L2 -4 3268 3142 196 313 116 27 chr6 36444565 36444712 -145970530 - L2 LINE L2 -494 2820 2661 494 351 68 20 chr6 36444806 36445264 -145969978 - L2 LINE L2 -696 2618 2139 386 267 38 8 chr6 36445308 36445439 -145969803 - LTR33A LTR ERVL -9 514 380 389 281 45 20 chr6 36445718 36445900 -145969342 - LTR33A LTR ERVL -363 167 1 358 315 84 11 chr6 36445985 36446258 -145968984 - L2 LINE L2 -1299 2015 1723 906 171 73 6 chr6 36446364 36446528 -145968714 - FAM SINE Alu 0 175 1 842 172 55 0 chr6 36446860 36447005 -145968237 - MER58B DNA MER1_type 0 341 189 191 319 17 25 chr6 36447012 36447131 -145968111 + L2 LINE L2 2036 2153 -1161 954 172 17 17 chr6 36447131 36447305 -145967937 - MER58B DNA MER1_type -161 180 7 2119 111 7 33 chr6 36447982 36448288 -145966954 + AluSg SINE Alu 1 298 -12 617 279 92 32 chr6 36448412 36448813 -145966429 + L2 LINE L2 1894 2318 -996 248 67 0 0 chr6 36448850 36448880 -145966362 - U6 snRNA snRNA -2 105 76 33 43 0 0 chr6 36448997 36449044 -145966198 + AT_rich Low_complexity Low_complexity 1 47 0 257 176 24 94 chr6 36449053 36449138 -145966104 - LTR67 LTR ERVL -21 536 458 25 0 0 0 chr6 36449611 36449636 -145965606 + AT_rich Low_complexity Low_complexity 1 25 0 358 269 75 50 chr6 36449672 36449954 -145965288 - L1MC5 LINE L1 -36 7925 7637 246 334 116 36 chr6 36450172 36450561 -145964681 + L2 LINE L2 2327 2746 -568 208 300 89 11 chr6 36450614 36450704 -145964538 + L2 LINE L2 2986 3082 -190 1973 131 0 45 chr6 36451014 36451326 -145963916 - AluSc SINE Alu -11 298 1 311 218 39 13 chr6 36451565 36451643 -145963599 - MIR SINE MIR -77 185 106 232 230 230 37 chr6 36451641 36451776 -145963466 - L2 LINE L2 -1 3312 3152 * 6789 132 24 17 chr6 36451805 36453838 -145961404 + L1MA4 LINE L1 4256 6300 0 925 194 112 40 chr6 36453844 36454122 -145961120 + Charlie4a DNA MER1_type 32 329 -179 1157 107 143 36 chr6 36454212 36454436 -145960806 - MER44D DNA MER2_type -91 518 1 520 184 29 10 chr6 36454455 36454558 -145960684 + Charlie4a DNA MER1_type 404 508 0 695 221 82 24 chr6 36454891 36454960 -145960282 + MIR SINE MIR 33 97 -165 1536 206 61 16 chr6 36454960 36455132 -145960110 + MSTD LTR MaLR 1 164 -232 2351 78 0 0 chr6 36455132 36455441 -145959801 + AluY SINE Alu 1 309 0 1536 206 61 16 chr6 36455441 36455645 -145959597 + MSTD LTR MaLR 164 395 -1 695 221 82 24 chr6 36455645 36455783 -145959459 + MIR SINE MIR 97 252 -10 329 331 116 72 chr6 36456254 36456659 -145958583 - L2 LINE L2 -25 3247 2825 792 138 74 95 chr6 36456812 36456843 -145958399 + MER3 DNA MER1_type 1 31 -178 2190 103 10 0 chr6 36456843 36457135 -145958107 + AluSg SINE Alu 1 295 -15 792 138 74 95 chr6 36457135 36457292 -145957950 + MER3 DNA MER1_type 31 185 -24 506 311 54 31 chr6 36457698 36458049 -145957193 - L2 LINE L2 -1210 2104 1746 204 167 28 0 chr6 36461430 36461476 -145953766 + G-rich Low_complexity Low_complexity 5 32 0 23 0 0 0 chr6 36465780 36465803 -145949439 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr6 36465856 36465883 -145949359 + (TG)n Simple_repeat Simple_repeat 1 27 0 255 133 0 0 chr6 36468473 36468518 -145946724 + (GGA)n Simple_repeat Simple_repeat 2 46 0 458 242 75 38 chr6 36469043 36469078 -145946164 - MER58A DNA MER1_type -2219 201 169 1657 141 93 13 chr6 36469078 36469390 -145945852 - MER1B DNA MER1_type 0 337 1 458 242 75 38 chr6 36469390 36469540 -145945702 - MER58A DNA MER1_type -2251 169 9 2000 97 53 81 chr6 36469625 36469946 -145945296 - AluSx SINE Alu 0 312 1 577 196 122 20 chr6 36470004 36470152 -145945090 + Tigger1 DNA MER2_type 1 163 -2255 1832 57 102 0 chr6 36472314 36472560 -145942682 + AluY SINE Alu 21 291 -20 938 242 35 27 chr6 36474820 36475076 -145940166 - MIR SINE MIR -2 260 3 969 174 12 0 chr6 36475791 36475952 -145939290 - FRAM SINE Alu -13 163 1 1627 102 91 4 chr6 36476181 36476445 -145938797 - THE1C LTR MaLR 0 375 89 1937 126 72 13 chr6 36476570 36476888 -145938354 - MER1B DNA MER1_type 0 337 1 430 200 142 0 chr6 36476896 36477016 -145938226 - MIR SINE MIR -6 256 120 1903 138 0 21 chr6 36477904 36478194 -145937048 - AluSx SINE Alu -24 288 5 316 308 107 18 chr6 36479043 36479212 -145936030 - MIR SINE MIR -6 256 73 261 146 0 0 chr6 36479373 36479421 -145935821 + (CA)n Simple_repeat Simple_repeat 2 49 0 2159 109 0 0 chr6 36479443 36479757 -145935485 - AluSx SINE Alu 0 314 1 9416 159 21 28 chr6 36479762 36480011 -145935231 - L1MA4A LINE L1 -1 6302 6053 2644 120 15 5 chr6 36480011 36480410 -145934832 + MER57A LTR ERV1 1 403 0 9416 159 21 28 chr6 36480410 36480890 -145934352 - L1MA4A LINE L1 -250 6053 5571 2258 60 71 0 chr6 36480890 36481173 -145934069 + AluSp SINE Alu 1 303 -10 9416 159 21 28 chr6 36481173 36481650 -145933592 - L1MA4A LINE L1 -732 5571 5093 2237 120 3 3 chr6 36481650 36481959 -145933283 - AluSg SINE Alu -1 309 1 9416 159 21 28 chr6 36481959 36482874 -145932368 - L1MA4A LINE L1 -1210 5093 4059 1940 136 0 41 chr6 36482874 36483190 -145932052 - AluSx SINE Alu -9 303 1 9416 159 21 28 chr6 36483190 36483865 -145931377 - L1MA4A LINE L1 -2244 4059 3381 709 200 36 0 chr6 36483865 36484030 -145931212 - L1MA4A LINE L1 -2687 3459 3289 2784 35 0 0 chr6 36484511 36484821 -145930421 - AluY SINE Alu -1 310 1 200 271 0 0 chr6 36484916 36484986 -145930256 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 27 0 8 0 chr6 36485248 36485316 -145929926 + AT_rich Low_complexity Low_complexity 1 27 0 2391 84 3 0 chr6 36485323 36485620 -145929622 + AluSq SINE Alu 1 298 -15 252 0 0 0 chr6 36485714 36485742 -145929500 + (CA)n Simple_repeat Simple_repeat 2 29 0 259 33 0 0 chr6 36485808 36485838 -145929404 + MSTD LTR MaLR 1 30 -366 1158 193 93 135 chr6 36486068 36486476 -145928766 + MSTD LTR MaLR 37 428 0 510 274 93 35 chr6 36486477 36487341 -145927901 - L1MC5 LINE L1 -99 7862 7102 1269 268 39 8 chr6 36487490 36487852 -145927390 - L1MC4 LINE L1 -974 7068 6696 24 32 0 0 chr6 36487888 36487919 -145927323 + AT_rich Low_complexity Low_complexity 1 31 0 2113 126 0 10 chr6 36487958 36488267 -145926975 - AluSg SINE Alu -4 306 1 917 181 0 92 chr6 36488432 36488689 -145926553 + AluJo SINE Alu 86 312 0 534 224 75 119 chr6 36488872 36488958 -145926284 - L1MC4a LINE L1 -1758 6050 5962 1794 183 3 0 chr6 36488958 36489243 -145925999 - AluJo SINE Alu -26 286 1 534 224 75 119 chr6 36489243 36489400 -145925842 - L1MC4a LINE L1 -1846 5962 5826 1346 102 62 33 chr6 36489400 36489583 -145925659 - L1MA4A LINE L1 0 6303 6110 464 0 0 18 chr6 36489583 36489640 -145925602 + (TA)n Simple_repeat Simple_repeat 2 57 0 1346 102 62 33 chr6 36489640 36489700 -145925542 - L1MA4A LINE L1 -193 6110 6053 534 224 75 119 chr6 36489700 36489816 -145925426 - L1MC4a LINE L1 -1982 5826 5706 2076 101 0 0 chr6 36489865 36490132 -145925110 + AluSg SINE Alu 35 301 -9 193 293 0 0 chr6 36490307 36490365 -145924877 + MIR SINE MIR 190 247 -15 190 347 76 21 chr6 36491101 36491245 -145923997 - L2 LINE L2 -422 2892 2741 418 308 138 0 chr6 36491475 36491670 -145923572 + MIR SINE MIR 3 224 -38 378 289 71 36 chr6 36492555 36492808 -145922434 - L2 LINE L2 -86 3186 2925 2370 109 0 0 chr6 36492884 36493196 -145922046 + AluSx SINE Alu 1 312 0 2625 266 77 26 chr6 36493276 36494309 -145920933 + HAL1 LINE L1 1422 2507 0 260 225 21 199 chr6 36495714 36495755 -145919487 - MER5A DNA MER1_type -22 167 120 2051 127 3 0 chr6 36495755 36496039 -145919203 + AluSc SINE Alu 1 285 -24 260 225 21 199 chr6 36496039 36496118 -145919124 - MER5A DNA MER1_type -69 120 89 1792 147 0 11 chr6 36496118 36496423 -145918819 - AluJo SINE Alu 0 302 1 260 225 21 199 chr6 36496423 36496491 -145918751 - MER5A DNA MER1_type -100 89 11 198 245 19 19 chr6 36499323 36499376 -145915866 + MIR SINE MIR 21 73 -135 26 30 0 0 chr6 36500590 36500623 -145914619 + AT_rich Low_complexity Low_complexity 1 33 0 331 143 127 0 chr6 36500779 36500842 -145914400 + LTR33 LTR ERVL 87 157 -364 203 0 0 36 chr6 36500865 36500893 -145914349 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 253 326 35 42 chr6 36500999 36501143 -145914099 + MER5A DNA MER1_type 19 161 -28 * 271 331 41 41 chr6 36501014 36501159 -145914083 - MER5A DNA MER1_type -25 164 20 239 309 49 0 chr6 36501305 36501386 -145913856 + L2 LINE L2 3228 3312 -1 991 163 0 6 chr6 36501811 36501977 -145913265 - FRAM SINE Alu -11 165 1 369 303 113 22 chr6 36501981 36502351 -145912891 - L1MEd LINE L1 -3587 2542 2139 375 277 76 66 chr6 36502355 36502760 -145912482 - MLT1J2 LTR MaLR -5 445 1 1648 118 36 69 chr6 36502828 36503161 -145912081 - AluSx SINE Alu 0 312 1 508 329 83 19 chr6 36503690 36504015 -145911227 - L1MEd LINE L1 -4906 1213 868 247 262 107 39 chr6 36504975 36505078 -145910164 - L2 LINE L2 0 3272 3163 948 180 148 7 chr6 36505078 36505362 -145909880 + MER33 DNA MER1_type 1 324 0 316 354 130 14 chr6 36507761 36507984 -145907258 - L2 LINE L2 -188 3084 2836 507 304 168 46 chr6 36508176 36508938 -145906304 + L2 LINE L2 1288 2142 -1172 1064 183 19 33 chr6 36511806 36512019 -145903223 + MER20 DNA MER1_type 10 219 0 1717 137 82 63 chr6 36512094 36512474 -145902768 + MLT1B LTR MaLR 1 387 -3 3033 230 162 29 chr6 36512841 36513797 -145901445 + MLT-int LTR MaLR 514 1596 -139 * 3766 191 35 29 chr6 36513792 36514628 -145900614 - L1MB2 LINE L1 -35 6136 5296 * 8681 144 36 28 chr6 36514622 36517162 -145898080 - L1MA8 LINE L1 -4 6287 3726 1914 201 37 33 chr6 36517162 36517649 -145897593 - L1MB2 LINE L1 -835 5311 4823 185 94 31 0 chr6 36517795 36517827 -145897415 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 279 0 0 0 chr6 36518108 36518139 -145897103 + (TA)n Simple_repeat Simple_repeat 1 31 0 2521 40 40 0 chr6 36518142 36518441 -145896801 - AluY SINE Alu 0 311 1 544 165 28 28 chr6 36519524 36519700 -145895542 + CT-rich Low_complexity Low_complexity 2 177 0 183 354 105 6 chr6 36520493 36520674 -145894568 + L2 LINE L2 2076 2274 -1040 183 42 0 0 chr6 36520858 36520882 -145894360 + (GA)n Simple_repeat Simple_repeat 1 24 0 201 374 43 12 chr6 36521242 36521405 -145893837 + MIR SINE MIR 19 186 -76 290 276 20 20 chr6 36521426 36521524 -145893718 - LTR67 LTR ERVL 0 557 460 641 250 26 7 chr6 36521536 36521688 -145893554 - L1MC4 LINE L1 -573 7469 7315 312 224 82 0 chr6 36521704 36521790 -145893452 - L1MC4 LINE L1 -493 7502 7315 * 1706 261 40 84 chr6 36521786 36522724 -145892518 - L1MB2 LINE L1 -2290 3856 2973 1779 180 3 13 chr6 36522724 36523035 -145892207 - AluJo SINE Alu 0 312 5 1706 261 40 84 chr6 36523035 36523217 -145892025 - L1MB2 LINE L1 -3173 2973 2785 708 240 38 83 chr6 36523248 36523288 -145891954 - L1M4c LINE L1 -2702 3942 3902 628 151 43 86 chr6 36523288 36523427 -145891815 - FLAM_A SINE Alu 0 133 1 708 240 38 83 chr6 36523427 36523731 -145891511 - L1M4c LINE L1 -2742 3902 3586 213 39 0 0 chr6 36523731 36523757 -145891485 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 708 240 38 83 chr6 36523757 36523789 -145891453 - L1M4c LINE L1 -3058 3586 3554 2017 128 3 0 chr6 36523789 36524077 -145891165 - AluSx SINE Alu -23 289 1 708 240 38 83 chr6 36524077 36524169 -145891073 - L1M4c LINE L1 -3090 3554 3493 * 3979 223 56 63 chr6 36524165 36525226 -145890016 - L1M4c LINE L1 -3873 2952 1885 559 179 0 0 chr6 36525226 36525310 -145889932 - AluJ/FLAM SINE Alu -227 85 2 3979 223 56 63 chr6 36525310 36526318 -145888924 - L1M4c LINE L1 -4940 1885 790 1192 200 55 48 chr6 36526321 36526715 -145888527 - MSTB2 LTR MaLR -8 445 1 3570 241 27 8 chr6 36526715 36527492 -145887750 - L1M4c LINE L1 -5747 795 4 278 209 36 36 chr6 36527488 36527598 -145887644 - L1MDb LINE L1 -5170 1239 1130 * 1809 157 6 29 chr6 36528062 36528374 -145886868 - AluJo SINE Alu -7 305 1 636 254 0 0 chr6 36528784 36528926 -145886316 - MER69 DNA AcHobo -540 1986 1845 1002 244 156 10 chr6 36529314 36529622 -145885620 - MER69 DNA AcHobo -2173 353 1 5585 135 18 79 chr6 36529931 36530797 -145884445 - L1MA4A LINE L1 -8 6295 5378 729 195 8 0 chr6 36530797 36530925 -145884317 - FLAM_C SINE Alu 0 133 5 5585 135 18 79 chr6 36530925 36531127 -145884115 - L1MA4A LINE L1 -925 5378 5165 215 30 0 30 chr6 36531127 36531160 -145884082 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1229 179 61 32 chr6 36531160 36531439 -145883803 - AluJo SINE Alu -25 287 1 5585 135 18 79 chr6 36531439 36531951 -145883291 - L1MA4A LINE L1 -1136 5167 4802 2716 115 0 3 chr6 36531966 36532339 -145882903 - L1PB1 LINE L1 -4 6863 6492 537 19 10 146 chr6 36532362 36532567 -145882675 + (TA)n Simple_repeat Simple_repeat 2 178 0 5620 179 13 5 chr6 36532567 36534234 -145881008 - L1PB1 LINE L1 -360 6507 4830 7195 22 0 0 chr6 36534285 36535093 -145880149 - L1PA3 LINE L1 -2 6153 5346 6587 205 7 31 chr6 36535088 36536256 -145878986 - L1PB1 LINE L1 -2037 4825 3700 * 2398 91 13 0 chr6 36536256 36536564 -145878678 - AluSq SINE Alu -1 312 1 6587 205 7 31 chr6 36536564 36536920 -145878322 - L1PB1 LINE L1 -3162 3700 3337 2303 121 25 27 chr6 36536920 36537285 -145877957 + THE1B LTR MaLR 1 364 0 4282 69 42 0 chr6 36537285 36537837 -145877405 + THE1B-int LTR MaLR 1 575 -1005 1394 229 22 11 chr6 36537823 36538194 -145877048 - L1PB1 LINE L1 -6483 380 6 * 7295 185 28 21 chr6 36538209 36539774 -145875468 - L1MA4A LINE L1 -1329 4817 3242 2064 161 108 50 chr6 36539774 36540239 -145875003 + LTR22B LTR ERVK 1 492 0 42441 85 3 5 chr6 36540241 36547063 -145868179 + HERVK22 LTR ERVK 3 6808 -29 1055 58 29 0 chr6 36547060 36547197 -145868045 - HERVK22 LTR ERVK -2471 4366 4226 * 342 374 50 23 chr6 36548707 36549009 -145866233 - L3 LINE CR1 -351 1226 917 265 328 39 8 chr6 36549108 36549236 -145866006 + L2 LINE L2 2078 2209 -1105 7324 54 8 43 chr6 36549491 36551167 -145864075 - SVA Other Other -756 1386 2 3791 239 83 63 chr6 36551695 36552368 -145862874 - L1MEc LINE L1 -2115 4100 3442 915 163 121 131 chr6 36552368 36552773 -145862469 - MER57A LTR ERV1 0 403 3 3791 239 83 63 chr6 36552773 36553834 -145861408 - L1MEc LINE L1 -2773 3442 2337 2782 87 20 3 chr6 36553834 36554224 -145861018 - L1PA8 LINE L1 -4 6168 5772 3791 239 83 63 chr6 36554224 36554798 -145860444 - L1MEc LINE L1 -3878 2337 1776 273 81 0 0 chr6 36556053 36556090 -145859152 - MSTB LTR MaLR -389 37 1 710 191 46 7 chr6 36556306 36556458 -145858784 - MER96B DNA MER1_type? -258 159 2 456 311 88 58 chr6 36556574 36557583 -145857659 + L1MC/D LINE L1 4723 5777 -540 2177 179 42 0 chr6 36557583 36557991 -145857251 + MSTB1 LTR MaLR 4 428 -4 456 311 88 58 chr6 36557991 36558020 -145857222 + L1MC/D LINE L1 5777 5804 -513 685 212 68 56 chr6 36558646 36558896 -145856346 + MIR SINE MIR 6 258 -4 678 191 141 48 chr6 36560572 36560783 -145854459 - MIR SINE MIR 0 262 34 708 128 0 0 chr6 36561093 36561202 -145854040 - L1PA13 LINE L1 -7 6156 6048 277 316 32 39 chr6 36561405 36561560 -145853682 - L3 LINE CR1 -2 1575 1422 202 358 80 18 chr6 36561921 36562147 -145853095 - L2 LINE L2 -1 3271 3032 181 394 22 15 chr6 36562521 36562658 -145852584 - L2 LINE L2 -1321 1993 1856 251 281 22 34 chr6 36563495 36563584 -145851658 + MIR SINE MIR 45 132 -76 395 345 53 8 chr6 36565021 36565267 -145849975 - MIR SINE MIR -4 258 2 228 270 34 11 chr6 36565609 36565698 -145849544 - MIR SINE MIR -64 198 108 4871 38 2 7 chr6 36567310 36567895 -145847347 - L1PA5 LINE L1 -1 6153 5572 1177 15 0 0 chr6 36567895 36568026 -145847216 + L1PA5 LINE L1 5439 5569 -586 1858 164 6 6 chr6 36573848 36574159 -145841083 - AluJb SINE Alu -1 311 1 1669 144 7 50 chr6 36574893 36575191 -145840051 + AluSq SINE Alu 1 285 -28 192 40 0 0 chr6 36575194 36575219 -145840023 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr6 36575240 36575293 -145839949 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 596 278 155 28 chr6 36579720 36580004 -145835238 - MLT1I LTR MaLR -5 404 85 266 242 0 15 chr6 36580074 36580140 -145835102 - L2 LINE L2 -11 3302 3238 355 309 77 48 chr6 36580414 36580686 -145834556 + L1MEd LINE L1 938 1217 -4902 432 289 144 34 chr6 36580790 36581351 -145833891 + L1MEd LINE L1 3071 3693 -2436 226 326 37 7 chr6 36581360 36581495 -145833747 + L1MEd LINE L1 3738 3876 -2253 246 281 92 13 chr6 36581608 36581761 -145833481 + L1P LINE L1 4059 4223 -1923 538 246 138 13 chr6 36581765 36581989 -145833253 + MIR SINE MIR 11 262 0 200 288 0 0 chr6 36583629 36583688 -145831554 + A-rich Low_complexity Low_complexity 2 60 0 284 200 339 0 chr6 36583776 36583906 -145831336 - MIR SINE MIR -10 252 79 221 357 127 25 chr6 36585142 36586043 -145829199 - L2 LINE L2 -511 2803 1812 729 205 0 0 chr6 36586053 36586180 -145829062 + FLAM_C SINE Alu 1 127 -6 11443 175 133 9 chr6 36586447 36586688 -145828554 + L1PB1 LINE L1 94 304 -6558 2366 77 0 3 chr6 36586688 36586986 -145828256 + AluY SINE Alu 2 298 -13 11443 175 133 9 chr6 36586986 36591262 -145823980 + L1PB1 LINE L1 304 5155 -1707 4544 153 45 30 chr6 36591268 36592229 -145823013 - MER11C LTR ERVK -4 1067 1 4183 169 26 1 chr6 36592229 36593549 -145821693 + L1PB1 LINE L1 5151 6507 -360 271 89 0 63 chr6 36593553 36593632 -145821610 + (TA)n Simple_repeat Simple_repeat 2 75 0 2430 123 16 0 chr6 36593632 36593997 -145821245 + L1PB1 LINE L1 6492 6862 -5 232 322 9 26 chr6 36595614 36595729 -145819513 + (TGAG)n Simple_repeat Simple_repeat 1 113 0 * 376 282 5 48 chr6 36595648 36595836 -145819406 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 345 333 13 7 chr6 36595911 36596061 -145819181 + (TGGG)n Simple_repeat Simple_repeat 1 151 0 327 271 199 12 chr6 36596596 36596762 -145818480 - MIR SINE MIR -1 261 65 639 186 97 7 chr6 36598321 36598466 -145816776 + MER96B DNA MER1_type? 257 414 -3 246 357 97 20 chr6 36598663 36598859 -145816383 - L2 LINE L2 -30 3242 3032 180 394 43 21 chr6 36598908 36599187 -145816055 - L2 LINE L2 -352 2962 2678 1267 151 72 0 chr6 36599440 36599691 -145815551 - L1MA8 LINE L1 -6 6285 6017 228 33 0 0 chr6 36599718 36599748 -145815494 - L1MA8 LINE L1 -263 6028 5999 215 356 182 18 chr6 36599766 36600255 -145814987 - L2 LINE L2 -898 2416 1848 5829 140 37 1 chr6 36600368 36601707 -145813535 - L1PB1 LINE L1 -14 6137 4750 358 344 78 0 chr6 36605044 36605236 -145810006 - MIR SINE MIR -6 256 50 2201 105 10 0 chr6 36606310 36606604 -145808638 + AluSg SINE Alu 1 297 -13 248 130 22 0 chr6 36606641 36606687 -145808555 + GA-rich Low_complexity Low_complexity 2 48 0 1654 227 39 81 chr6 36608095 36608734 -145806508 - LTR9 LTR ERV1 0 612 1 1530 148 6 11 chr6 36608734 36609005 -145806237 - HUERS-P3 LTR ERV1 0 8919 7176 710 128 111 39 chr6 36609288 36609468 -145805774 - HUERS-P3 LTR ERV1 -2439 2576 2384 486 179 0 36 chr6 36609472 36609584 -145805658 - HUERS-P3 LTR ERV1 -1947 6972 6865 4162 204 27 1 chr6 36609584 36610316 -145804926 - HUERS-P3 LTR ERV1 -2007 6912 6162 4160 127 66 8 chr6 36610302 36610941 -145804301 - HUERS-P3 LTR ERV1 -3343 5576 4901 * 1018 127 7 0 chr6 36610943 36611085 -145804157 - HUERS-P3 LTR ERV1 -4238 4681 4539 * 8396 162 16 14 chr6 36611078 36612294 -145802948 - HUERS-P3 LTR ERV1 -5313 2105 1759 4645 178 15 43 chr6 36612294 36613291 -145801951 - LTR5 LTR ERVK 0 969 1 8396 162 16 14 chr6 36613291 36614304 -145800938 - HUERS-P3 LTR ERV1 -5659 1759 750 1476 174 7 66 chr6 36614313 36614618 -145800624 - HUERS-P3 LTR ERV1 -6876 542 256 309 207 17 0 chr6 36614623 36614681 -145800561 - HUERS-P3 LTR ERV1 -7322 96 38 1459 218 58 93 chr6 36614726 36615360 -145799882 - LTR9 LTR ERV1 0 612 1 278 279 90 27 chr6 36615781 36615959 -145799283 - MER5A DNA MER1_type 0 189 1 2981 9 0 0 chr6 36616004 36616322 -145798920 + AluYb8 SINE Alu 1 318 0 232 333 100 52 chr6 36617423 36617654 -145797588 + L3 LINE CR1 330 571 -1006 2214 86 69 0 chr6 36617781 36618072 -145797170 - AluSp SINE Alu -2 311 1 1307 86 0 0 chr6 36622069 36622232 -145793010 + AluY SINE Alu 131 293 -18 2031 105 25 68 chr6 36622252 36622577 -145792665 + AluSx SINE Alu 1 311 -1 2442 119 42 0 chr6 36622577 36622956 -145792286 - MER57A LTR ERV1 -8 395 1 1519 101 101 8 chr6 36622956 36623113 -145792129 - MER57A-int LTR ERV1 0 7537 7349 203 0 0 36 chr6 36623113 36623141 -145792101 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1519 101 101 8 chr6 36623141 36623220 -145792022 - MER57A-int LTR ERV1 -188 7349 7279 675 93 22 93 chr6 36623220 36623359 -145791883 - LTR54B LTR ERV1 -367 131 3 14246 87 21 4 chr6 36623359 36625255 -145789987 - MER57A-int LTR ERV1 -391 7146 5219 990 53 0 0 chr6 36625255 36625369 -145789873 + AluY SINE Alu 183 296 -15 1412 105 0 0 chr6 36625369 36625559 -145789683 - MER57A-int LTR ERV1 -2312 5225 5036 321 26 0 0 chr6 36625559 36625597 -145789645 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1331 160 5 0 chr6 36625611 36625823 -145789419 - AluSg/x SINE Alu -9 301 89 12356 124 21 36 chr6 36625840 36626198 -145789044 - MER57A-int LTR ERV1 -3651 2295 1933 2051 135 0 0 chr6 36626198 36626486 -145788756 - AluSx SINE Alu -24 288 1 12356 124 21 36 chr6 36626486 36627285 -145787957 - MER57A-int LTR ERV1 -4013 1933 1123 2629 40 7 0 chr6 36627285 36627587 -145787655 - AluY SINE Alu -7 304 1 12356 124 21 36 chr6 36627587 36628113 -145787129 - MER57A-int LTR ERV1 -4823 1123 591 2442 75 0 25 chr6 36628113 36628432 -145786810 + AluY SINE Alu 1 311 0 12356 124 21 36 chr6 36628432 36628550 -145786692 - MER57A-int LTR ERV1 -5355 591 522 2316 95 3 0 chr6 36628550 36628844 -145786398 + AluSx SINE Alu 1 295 -17 12356 124 21 36 chr6 36628844 36629004 -145786238 - MER57A-int LTR ERV1 -5424 522 361 4955 144 12 32 chr6 36628997 36629233 -145786009 - MER57A-int LTR ERV1 -6731 806 567 * 1868 149 14 17 chr6 36629233 36629522 -145785720 - AluSx SINE Alu -22 290 3 4955 144 12 32 chr6 36629522 36630107 -145785135 - MER57A-int LTR ERV1 -6970 567 1 2512 148 10 0 chr6 36630107 36630506 -145784736 - MER57A LTR ERV1 0 403 1 256 200 67 0 chr6 36630513 36630573 -145784669 - MIR SINE MIR -64 144 81 314 314 146 35 chr6 36631875 36632765 -145782477 - L2 LINE L2 -511 2803 1815 1447 211 22 4 chr6 36632778 36632904 -145782338 + AluJo SINE Alu 1 123 -189 279 0 0 0 chr6 36632904 36632935 -145782307 + (TA)n Simple_repeat Simple_repeat 1 31 0 1447 211 22 4 chr6 36632935 36633083 -145782159 + AluJo SINE Alu 123 280 -32 208 0 37 0 chr6 36633083 36633110 -145782132 + (GA)n Simple_repeat Simple_repeat 1 28 0 276 185 0 0 chr6 36633111 36633165 -145782077 + GA-rich Low_complexity Low_complexity 2 55 0 260 250 227 0 chr6 36633313 36633441 -145781801 + MIR SINE MIR 106 262 0 35 24 0 0 chr6 36634199 36634241 -145781001 + AT_rich Low_complexity Low_complexity 1 42 0 2451 92 0 0 chr6 36634301 36634606 -145780636 + AluSq SINE Alu 1 305 -8 342 0 0 0 chr6 36634675 36634713 -145780529 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 40 0 0 chr6 36634713 36634738 -145780504 + (GA)n Simple_repeat Simple_repeat 2 26 0 718 221 6 31 chr6 36634739 36634902 -145780340 - AluJb SINE Alu -31 281 123 1593 175 95 0 chr6 36635390 36635664 -145779578 - AluSx SINE Alu -12 300 1 2400 85 0 26 chr6 36635970 36636276 -145778966 + AluSq SINE Alu 1 298 -15 1441 220 26 0 chr6 36636494 36636799 -145778443 - MER68 LTR ERV1 0 562 250 1919 171 25 53 chr6 36636833 36637226 -145778016 - MLT2B3 LTR ERVL -6 548 167 559 136 0 0 chr6 36637227 36637308 -145777934 + AluSg/x SINE Alu 219 299 -11 25 31 0 0 chr6 36637390 36637422 -145777820 + AT_rich Low_complexity Low_complexity 1 32 0 1389 171 104 4 chr6 36637670 36637939 -145777303 + AluJb SINE Alu 1 296 -16 228 213 12 12 chr6 36638950 36638961 -145776281 + Charlie2 DNA MER1_type 2413 2423 -439 1426 134 46 8 chr6 36638961 36639171 -145776071 + L1MA8 LINE L1 6017 6240 -51 252 0 0 0 chr6 36639171 36639199 -145776043 + (TA)n Simple_repeat Simple_repeat 1 28 0 1426 134 46 8 chr6 36639199 36639249 -145775993 + L1MA8 LINE L1 6240 6287 -4 228 213 12 12 chr6 36639249 36639317 -145775925 + Charlie2 DNA MER1_type 2422 2492 -370 563 212 66 33 chr6 36639441 36639592 -145775650 + MER3 DNA MER1_type 1 156 -53 587 162 103 22 chr6 36640927 36641084 -145774158 + L1ME1 LINE L1 5997 6161 -5 2209 110 7 0 chr6 36641090 36641419 -145773823 - AluSx SINE Alu 0 331 1 1014 161 36 21 chr6 36641708 36641900 -145773342 - MER3 DNA MER1_type 0 209 15 1088 115 0 14 chr6 36642052 36642200 -145773042 + AluSx SINE Alu 1 146 -166 4720 69 26 9 chr6 36642200 36643304 -145771938 - MER11A LTR ERVK 0 1266 3 1118 122 0 0 chr6 36643304 36643452 -145771790 + AluSx SINE Alu 139 286 -26 186 71 0 0 chr6 36643452 36643480 -145771762 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2054 93 4 7 chr6 36643757 36644026 -145771216 + AluSx SINE Alu 45 312 0 1047 212 97 26 chr6 36644028 36644297 -145770945 + MLT1J LTR MaLR 217 504 -7 352 284 81 7 chr6 36644972 36645120 -145770122 + MLT1L LTR MaLR 424 582 -33 2473 84 10 0 chr6 36645225 36645535 -145769707 - AluSp SINE Alu 0 313 1 2233 131 0 3 chr6 36645555 36645868 -145769374 - AluSx SINE Alu 0 312 1 383 239 39 71 chr6 36645901 36646056 -145769186 + MER5B DNA MER1_type 1 150 -28 313 210 76 34 chr6 36646117 36646236 -145769006 - Charlie1 DNA MER1_type -47 2714 2591 1925 142 7 10 chr6 36646238 36646534 -145768708 + AluJb SINE Alu 1 295 -17 1299 119 10 15 chr6 36646344 36646545 -145768697 + AluSg/x SINE Alu 105 304 -6 313 177 200 39 chr6 36646649 36646671 -145768571 + L1MC5 LINE L1 7550 7567 -394 243 0 0 0 chr6 36646671 36646698 -145768544 + (CA)n Simple_repeat Simple_repeat 2 28 0 313 177 200 39 chr6 36646698 36646803 -145768439 + L1MC5 LINE L1 7567 7699 -262 942 179 196 0 chr6 36646837 36647066 -145768176 - ORSL DNA AcHobo -1 274 1 214 133 111 0 chr6 36647923 36647968 -145767274 - MIR SINE MIR -111 151 102 2360 67 0 0 chr6 36648656 36648953 -145766289 + AluY SINE Alu 1 297 -14 1704 164 0 7 chr6 36648960 36649247 -145765995 + AluJb SINE Alu 26 310 -2 204 40 0 0 chr6 36649759 36649784 -145765458 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1183 142 0 44 chr6 36649784 36649961 -145765281 - AluJo SINE Alu -32 280 112 1708 162 47 3 chr6 36649961 36650258 -145764984 + AluJb SINE Alu 1 310 -2 1183 142 0 44 chr6 36650258 36650284 -145764958 - AluJo SINE Alu -200 112 86 2094 97 3 3 chr6 36650611 36650899 -145764343 + AluSc SINE Alu 8 295 -14 204 179 0 0 chr6 36658285 36658324 -145756918 + (CA)n Simple_repeat Simple_repeat 2 40 0 441 229 137 11 chr6 36664634 36664809 -145750433 + MIR3 SINE MIR 3 199 -9 410 271 234 16 chr6 36665394 36665582 -145749660 + MIR SINE MIR 13 241 -21 2242 105 0 34 chr6 36671819 36672142 -145743100 - AluSx SINE Alu 0 312 1 2108 121 3 0 chr6 36672349 36672646 -145742596 + AluSq SINE Alu 1 298 -15 2112 119 3 0 chr6 36672786 36673081 -145742161 + AluSx SINE Alu 1 296 -16 232 347 0 28 chr6 36676161 36676337 -145738905 + G-rich Low_complexity Low_complexity 4 174 0 261 0 0 0 chr6 36676451 36676480 -145738762 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 276 270 93 59 chr6 36677313 36677518 -145737724 - MIR SINE MIR -51 211 17 306 296 22 9 chr6 36677841 36678076 -145737166 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 422 282 11 22 chr6 36678096 36678277 -145736965 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 313 333 15 7 chr6 36678346 36678481 -145736761 + (TGGG)n Simple_repeat Simple_repeat 1 136 0 402 238 238 0 chr6 36678993 36679144 -145736098 - MIR SINE MIR 0 262 76 263 246 7 0 chr6 36680164 36680306 -145734936 + CT-rich Low_complexity Low_complexity 2 144 0 218 319 18 35 chr6 36681532 36681645 -145733597 - L3b LINE CR1 -150 1433 1323 210 94 19 38 chr6 36682849 36682902 -145732340 + (CCCCCG)n Simple_repeat Simple_repeat 4 55 0 24 0 0 0 chr6 36687259 36687283 -145727959 + AT_rich Low_complexity Low_complexity 1 24 0 273 326 132 16 chr6 36687283 36687473 -145727769 - MIR SINE MIR -31 231 20 399 304 82 32 chr6 36687491 36687649 -145727593 + MIR3 SINE MIR 16 181 -27 211 290 72 0 chr6 36688912 36688981 -145726261 + MER91C DNA MER1_type 25 98 -42 1387 98 0 0 chr6 36689108 36689291 -145725951 + AluSg/x SINE Alu 121 303 -9 708 78 0 0 chr6 36689957 36690047 -145725195 + HY4 scRNA scRNA 1 90 -3 21 0 0 0 chr6 36690428 36690449 -145724793 + GC_rich Low_complexity Low_complexity 1 21 0 197 62 0 31 chr6 36690666 36690698 -145724544 + (CCG)n Simple_repeat Simple_repeat 3 33 0 243 0 0 0 chr6 36696328 36696355 -145718887 + (GA)n Simple_repeat Simple_repeat 2 28 0 233 262 16 0 chr6 36697653 36697714 -145717528 + G-rich Low_complexity Low_complexity 5 66 0 262 242 10 30 chr6 36698968 36699067 -145716175 + G-rich Low_complexity Low_complexity 5 101 0 316 183 32 75 chr6 36699389 36699482 -145715760 - MIR SINE MIR -43 219 131 397 292 110 26 chr6 36699529 36699683 -145715559 - MER5A DNA MER1_type -16 173 7 1740 177 0 44 chr6 36700675 36700991 -145714251 + AluJb SINE Alu 1 302 -10 472 129 129 0 chr6 36701150 36701235 -145714007 - MER5A DNA MER1_type -86 103 8 590 262 47 29 chr6 36701245 36701417 -145713825 + MIR SINE MIR 84 258 -4 294 308 16 44 chr6 36702467 36702649 -145712593 + CT-rich Low_complexity Low_complexity 4 180 0 514 241 137 29 chr6 36704899 36705108 -145710134 + MIR SINE MIR 4 233 -29 998 169 33 0 chr6 36705108 36705291 -145709951 + MER5A DNA MER1_type 1 189 0 514 241 137 29 chr6 36705291 36705314 -145709928 + MIR SINE MIR 233 252 -10 218 169 42 28 chr6 36705831 36705902 -145709340 + CT-rich Low_complexity Low_complexity 1 72 0 22 35 0 0 chr6 36707031 36707060 -145708182 + AT_rich Low_complexity Low_complexity 1 29 0 1949 163 3 3 chr6 36707195 36707502 -145707740 + AluSx SINE Alu 1 307 -5 235 305 105 11 chr6 36707931 36708026 -145707216 - L2 LINE L2 -1 3312 3209 706 263 110 76 chr6 36708059 36708823 -145706419 + L2 LINE L2 2485 3272 0 1425 157 4 44 chr6 36709128 36709253 -145705989 + AluJo SINE Alu 1 130 -182 3251 100 4 39 chr6 36709253 36709649 -145705593 - L1PA11 LINE L1 -6 6168 5760 2284 117 0 0 chr6 36709649 36709948 -145705294 - AluSg SINE Alu -10 300 2 2187 114 27 7 chr6 36709949 36710248 -145704994 - AluSg SINE Alu -5 305 1 3251 100 4 39 chr6 36710248 36710338 -145704904 - L1PA11 LINE L1 -413 5761 5697 1425 157 4 44 chr6 36710338 36710460 -145704782 + AluJo SINE Alu 130 238 -74 595 316 94 25 chr6 36710556 36710814 -145704428 + L1MC1 LINE L1 4080 4319 -1827 2374 95 0 0 chr6 36710814 36711120 -145704122 + AluY SINE Alu 1 306 -5 595 316 94 25 chr6 36711120 36711378 -145703864 + L1MC1 LINE L1 4319 4558 -1588 2341 91 0 7 chr6 36711378 36711674 -145703568 - AluSg SINE Alu -16 294 1 595 316 94 25 chr6 36711674 36711846 -145703396 + L1MC1 LINE L1 4558 4817 -1329 2104 122 153 42 chr6 36711865 36712041 -145703201 + MSTA LTR MaLR 1 156 -272 2084 143 3 7 chr6 36712041 36712341 -145702901 + AluJb SINE Alu 1 299 -13 2104 122 153 42 chr6 36712341 36712549 -145702693 + MSTA LTR MaLR 156 428 0 447 358 67 0 chr6 36712609 36712802 -145702440 + L1MC1 LINE L1 4910 5115 -1031 4844 152 59 85 chr6 36712805 36714014 -145701228 + L1MA8 LINE L1 3864 5103 -1188 1796 159 55 0 chr6 36714014 36714304 -145700938 + AluSx SINE Alu 1 306 -6 4844 152 59 85 chr6 36714304 36714346 -145700896 + L1MA8 LINE L1 5103 5145 -1146 1574 116 0 0 chr6 36714346 36714545 -145700697 + AluSc SINE Alu 1 199 -110 4844 152 59 85 chr6 36714545 36714584 -145700658 + L1MA8 LINE L1 5145 5183 -1108 437 125 0 0 chr6 36714584 36714648 -145700594 - AluSc SINE Alu -20 289 226 4844 152 59 85 chr6 36714648 36714844 -145700398 + L1MA8 LINE L1 5183 5383 -908 1853 182 0 7 chr6 36714844 36715140 -145700102 - AluJo SINE Alu -18 294 1 4844 152 59 85 chr6 36715140 36715777 -145699465 + L1MA8 LINE L1 5383 5940 -351 1157 152 0 16 chr6 36715780 36715964 -145699278 + FRAM SINE Alu 1 174 -2 938 93 27 87 chr6 36715973 36716156 -145699086 + L1MA8 LINE L1 5953 6124 -167 872 144 23 0 chr6 36716156 36716288 -145698954 + AluJo SINE Alu 1 135 -177 1916 167 7 3 chr6 36716288 36716594 -145698648 + AluJo SINE Alu 1 307 -5 403 201 98 55 chr6 36716594 36716758 -145698484 + L1MA8 LINE L1 6120 6290 -1 * 1053 272 66 21 chr6 36716755 36716835 -145698407 + L1MC1 LINE L1 5106 5181 -981 2446 83 0 3 chr6 36716835 36717137 -145698105 + AluY SINE Alu 1 301 -10 1053 272 66 21 chr6 36717137 36717796 -145697446 + L1MC1 LINE L1 5181 5817 -345 24 0 0 0 chr6 36717971 36717995 -145697247 + AT_rich Low_complexity Low_complexity 1 24 0 2328 95 14 0 chr6 36718232 36718528 -145696714 - AluSg SINE Alu -10 300 1 467 244 52 15 chr6 36718537 36718672 -145696570 + MIR SINE MIR 103 242 -20 214 162 0 0 chr6 36718680 36718717 -145696525 + (TTG)n Simple_repeat Simple_repeat 2 38 0 277 273 100 0 chr6 36718857 36718967 -145696275 - MER102b DNA MER1_type -13 328 208 1058 190 17 0 chr6 36719040 36719219 -145696023 - AluJb SINE Alu -6 306 125 288 186 0 0 chr6 36719219 36719278 -145695964 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 341 74 0 19 chr6 36719296 36719350 -145695892 - AluSq/x SINE Alu -164 138 86 1262 206 0 0 chr6 36719350 36719568 -145695674 - AluJo SINE Alu -92 220 3 229 133 20 166 chr6 36719569 36719662 -145695580 - Zaphod DNA AcHobo -3203 828 723 1844 174 3 0 chr6 36719662 36719950 -145695292 + AluJb SINE Alu 1 289 -23 229 133 20 166 chr6 36719950 36719982 -145695260 - Zaphod DNA AcHobo -3308 723 725 1937 183 25 30 chr6 36719982 36720137 -145695105 + MLT1A1 LTR MaLR 1 155 -210 2057 148 0 0 chr6 36720137 36720427 -145694815 + AluSx SINE Alu 1 290 -22 1937 183 25 30 chr6 36720427 36720638 -145694604 + MLT1A1 LTR MaLR 155 365 0 229 133 20 166 chr6 36720638 36720662 -145694580 - Zaphod DNA AcHobo -3305 726 700 283 261 15 0 chr6 36720662 36720727 -145694515 - MER2 DNA MER2_type 0 345 280 2158 107 7 3 chr6 36720748 36721037 -145694205 + AluY SINE Alu 3 292 -19 422 48 0 32 chr6 36721037 36721099 -145694143 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 908 202 93 0 chr6 36721112 36721305 -145693937 - MER2 DNA MER2_type -134 211 1 2347 222 81 31 chr6 36721305 36721399 -145693843 - Zaphod DNA AcHobo -3330 701 613 1097 66 20 7 chr6 36721399 36721550 -145693692 - L1PB1 LINE L1 -2 6149 5997 2347 222 81 31 chr6 36721550 36722123 -145693119 - Zaphod DNA AcHobo -3418 613 1 926 268 98 54 chr6 36722130 36722168 -145693074 - L2 LINE L2 -943 2371 2336 2368 95 0 3 chr6 36722168 36722472 -145692770 + AluSq SINE Alu 1 303 -10 926 268 98 54 chr6 36722472 36722971 -145692271 - L2 LINE L2 -978 2336 1810 369 245 48 88 chr6 36722980 36723127 -145692115 - L1MC4 LINE L1 0 8042 7902 1812 179 14 0 chr6 36723151 36723442 -145691800 - AluJo SINE Alu -12 300 6 2209 104 3 13 chr6 36723467 36723774 -145691468 - AluSp SINE Alu -9 304 1 307 251 70 55 chr6 36723822 36723949 -145691293 - L1MC4 LINE L1 -146 7896 7763 2289 118 0 0 chr6 36723949 36724255 -145690987 + AluSc SINE Alu 1 306 -3 307 251 70 55 chr6 36724255 36724326 -145690916 - L1MC4 LINE L1 -279 7763 7695 210 37 0 0 chr6 36724326 36724353 -145690889 + (TA)n Simple_repeat Simple_repeat 1 27 0 346 135 0 27 chr6 36724366 36724440 -145690802 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1672 160 13 69 chr6 36724440 36724758 -145690484 - AluJb SINE Alu -12 300 1 1800 331 109 33 chr6 36724824 36726121 -145689121 - L2 LINE L2 -1849 1465 71 2185 110 7 10 chr6 36726138 36726446 -145688796 + AluSx SINE Alu 1 307 -5 1795 145 76 10 chr6 36726456 36726817 -145688425 + AluSg SINE Alu 1 380 0 702 233 71 57 chr6 36726823 36727008 -145688234 + MIR SINE MIR 20 201 -61 2590 105 57 38 chr6 36727008 36727349 -145687893 + MSTA LTR MaLR 1 334 -94 1852 148 28 24 chr6 36727349 36727640 -145687602 - AluJb SINE Alu -19 293 2 2378 100 0 0 chr6 36727647 36727947 -145687295 - AluSx SINE Alu -11 301 2 2590 105 57 38 chr6 36727947 36728017 -145687225 + MSTA LTR MaLR 339 428 0 702 233 71 57 chr6 36728017 36728041 -145687201 + MIR SINE MIR 201 232 -30 2276 117 0 0 chr6 36728708 36729006 -145686236 + AluSq SINE Alu 1 298 -15 1705 161 12 62 chr6 36729134 36729330 -145685912 - AluJb SINE Alu -5 307 132 2350 80 7 0 chr6 36729330 36729619 -145685623 + AluSg SINE Alu 1 291 -19 1705 161 12 62 chr6 36729619 36729745 -145685497 - AluJb SINE Alu -180 132 1 546 241 0 50 chr6 36730339 36730480 -145684762 + MLT1E3 LTR MaLR 55 188 -436 465 34 0 0 chr6 36731072 36731131 -145684111 + (TG)n Simple_repeat Simple_repeat 2 60 0 676 223 42 12 chr6 36731209 36731277 -145683965 - MER97a DNA MER1_type? -718 176 112 2351 102 0 0 chr6 36731277 36731580 -145683662 + AluSx SINE Alu 1 303 -9 676 223 42 12 chr6 36731580 36731677 -145683565 - MER97a DNA MER1_type? -782 112 6 2419 100 0 3 chr6 36731933 36732244 -145682998 + AluSx SINE Alu 1 310 -2 1001 195 53 11 chr6 36732313 36732706 -145682536 - Charlie4a DNA MER1_type -1 507 61 918 170 24 24 chr6 36732754 36732919 -145682323 + AluJb SINE Alu 138 302 -10 673 132 16 0 chr6 36732927 36733048 -145682194 + GA-rich Low_complexity Low_complexity 2 124 0 2118 117 3 0 chr6 36733058 36733465 -145681777 + AluSp SINE Alu 1 408 0 2075 133 16 7 chr6 36734198 36734507 -145680735 - AluJb SINE Alu 0 312 1 535 76 0 0 chr6 36734511 36734577 -145680665 - Alu SINE Alu -244 66 1 331 246 14 0 chr6 36734594 36734663 -145680579 + L1MCa LINE L1 1995 2064 -4362 2215 131 3 3 chr6 36734665 36734977 -145680265 - AluSq SINE Alu -1 312 1 1087 104 0 0 chr6 36734977 36735112 -145680130 - AluSq/x SINE Alu -178 135 1 207 0 0 0 chr6 36735117 36735140 -145680102 + (TA)n Simple_repeat Simple_repeat 1 23 0 2182 103 14 7 chr6 36735141 36735432 -145679810 - AluSp SINE Alu -20 293 1 1986 151 10 0 chr6 36735466 36735758 -145679484 + AluJb SINE Alu 1 295 -17 2081 125 0 31 chr6 36735763 36736082 -145679160 + AluSx SINE Alu 4 312 0 372 22 0 0 chr6 36736271 36736316 -145678926 + (CA)n Simple_repeat Simple_repeat 1 45 0 215 350 146 0 chr6 36737035 36737158 -145678084 + MIR SINE MIR 63 203 -59 * 312 294 101 0 chr6 36737148 36737257 -145677985 + L2 LINE L2 3192 3311 -2 1617 146 26 52 chr6 36737412 36737720 -145677522 - AluJo SINE Alu -12 300 1 1928 133 14 0 chr6 36737750 36738065 -145677177 - AluSx SINE Alu 0 312 1 2349 113 0 0 chr6 36741419 36741729 -145673513 + AluSg SINE Alu 1 310 0 687 252 185 42 chr6 36742437 36742664 -145672578 + L1MEd LINE L1 600 793 -5326 2511 89 0 0 chr6 36742664 36742967 -145672275 + AluSx SINE Alu 1 303 -9 687 252 185 42 chr6 36742967 36743172 -145672070 + L1MEd LINE L1 793 1094 -5025 1050 184 132 67 chr6 36743177 36743565 -145671677 + L1MC5 LINE L1 7190 7616 -345 2410 95 0 7 chr6 36743565 36743869 -145671373 + AluSq SINE Alu 1 302 -11 1050 184 132 67 chr6 36743869 36743957 -145671285 + L1MC5 LINE L1 7616 7697 -264 1016 164 7 0 chr6 36743967 36744119 -145671123 + FRAM SINE Alu 2 154 -22 259 245 21 98 chr6 36744175 36744318 -145670924 + L1MC5 LINE L1 7754 7885 -76 1074 125 12 12 chr6 36744472 36744661 -145670581 + AluSg/x SINE Alu 122 310 0 691 160 103 38 chr6 36744957 36745026 -145670216 + Charlie5 DNA MER1_type 2337 2400 -185 1875 138 24 17 chr6 36745026 36745322 -145669920 - AluJb SINE Alu -8 304 7 691 160 103 38 chr6 36745322 36745465 -145669777 + Charlie5 DNA MER1_type 2400 2563 -22 950 148 0 138 chr6 36745764 36745862 -145669380 - AluJo SINE Alu -120 192 139 2153 76 13 45 chr6 36745862 36746176 -145669066 + AluY SINE Alu 1 304 -7 950 148 0 138 chr6 36746176 36746294 -145668948 - AluJo SINE Alu -173 139 6 230 239 22 101 chr6 36746302 36746440 -145668802 + L1ME2 LINE L1 4061 4187 -1959 23 0 0 0 chr6 36746630 36746653 -145668589 + AT_rich Low_complexity Low_complexity 1 23 0 1297 129 31 0 chr6 36746657 36746851 -145668391 + AluJo SINE Alu 113 312 0 332 218 40 10 chr6 36746877 36746978 -145668264 + L1ME2 LINE L1 4515 4618 -1528 1791 106 0 4 chr6 36746993 36747228 -145668014 + AluSg/x SINE Alu 78 311 -1 389 228 57 0 chr6 36747228 36747351 -145667891 + L1ME2 LINE L1 4888 5017 -1129 1957 165 0 16 chr6 36747376 36747692 -145667550 - AluJb SINE Alu -1 311 1 2281 107 0 7 chr6 36747757 36748056 -145667186 - AluSc SINE Alu -12 297 1 1787 163 10 26 chr6 36748083 36748390 -145666852 + AluJb SINE Alu 1 302 -10 2213 114 7 0 chr6 36748463 36748761 -145666481 + AluSq SINE Alu 1 300 -13 286 133 147 40 chr6 36748761 36748836 -145666406 + FLAM SINE Alu 51 133 0 324 316 39 26 chr6 36748841 36748941 -145666301 + L1ME2 LINE L1 5204 5308 -838 1592 157 78 0 chr6 36748941 36749222 -145666020 - AluSx SINE Alu -9 303 1 324 316 39 26 chr6 36749222 36749276 -145665966 + L1ME2 LINE L1 5308 5360 -786 3400 95 24 32 chr6 36749325 36749818 -145665424 - LTR22B LTR ERVK -3 489 1 229 253 27 0 chr6 36749819 36749894 -145665348 + L1ME2 LINE L1 5368 5444 -718 1264 160 5 0 chr6 36749894 36750107 -145665135 + MER46A DNA MER2_type 1 214 -22 588 244 93 65 chr6 36750144 36750527 -145664715 + L1ME2 LINE L1 5470 5887 -277 843 250 0 11 chr6 36750541 36750729 -145664513 - AluJo SINE Alu -7 305 120 1989 128 7 3 chr6 36751075 36751372 -145663870 + AluSx SINE Alu 1 298 -14 267 194 107 97 chr6 36751384 36751487 -145663755 + AluJb SINE Alu 61 164 -138 6340 109 26 21 chr6 36751488 36751543 -145663699 + L1MA1 LINE L1 4850 4903 -1399 2000 133 3 0 chr6 36751543 36751843 -145663399 + AluSx SINE Alu 1 301 -11 6340 109 26 21 chr6 36751843 36752116 -145663126 + L1MA1 LINE L1 4903 5173 -1129 2307 91 3 0 chr6 36752116 36752423 -145662819 + AluSp SINE Alu 1 308 -5 6340 109 26 21 chr6 36752423 36753437 -145661805 + L1MA1 LINE L1 5173 6198 -104 1139 155 5 10 chr6 36753460 36753653 -145661589 + AluJb SINE Alu 121 312 0 279 0 0 0 chr6 36753742 36753773 -145661469 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr6 36753772 36753792 -145661450 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 390 265 120 0 chr6 36753971 36754088 -145661154 - L2 LINE L2 -5 3267 3137 2217 104 3 13 chr6 36755423 36755731 -145659511 - AluSq SINE Alu -6 307 3 1552 201 10 17 chr6 36755741 36756029 -145659213 - AluJo SINE Alu -26 286 1 2140 88 18 0 chr6 36756232 36756517 -145658725 - AluSg SINE Alu -20 290 1 1457 143 121 7 chr6 36756518 36756790 -145658452 - AluJo SINE Alu -9 303 1 578 212 30 30 chr6 36760868 36761000 -145654242 + FLAM_A SINE Alu 1 132 -1 2549 42 0 3 chr6 36761026 36761332 -145653910 + AluY SINE Alu 1 305 -6 776 234 106 9 chr6 36761485 36761703 -145653539 - MIR SINE MIR -21 241 3 590 117 0 32 chr6 36764175 36764269 -145650973 + AluSq/x SINE Alu 42 132 -181 1514 143 155 0 chr6 36764317 36764575 -145650667 - AluSx SINE Alu -14 298 1 1250 143 160 4 chr6 36764578 36764815 -145650427 - AluJb SINE Alu -20 292 19 504 213 28 6 chr6 36764956 36765189 -145650053 - MLT1C LTR MaLR -145 322 54 1840 129 17 10 chr6 36765682 36765976 -145649266 - AluSx SINE Alu -16 296 1 198 0 0 0 chr6 36767199 36767221 -145648021 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 296 277 117 0 chr6 36771471 36771565 -145643677 - MIR SINE MIR -48 214 110 1657 136 53 0 chr6 36772195 36772460 -145642782 - AluSx SINE Alu -14 298 20 2169 100 3 0 chr6 36773287 36773578 -145641664 + AluSg SINE Alu 1 292 -18 957 129 6 79 chr6 36773658 36773836 -145641406 + AluJb SINE Alu 1 165 -147 1992 128 13 7 chr6 36773975 36774280 -145640962 + AluSx SINE Alu 1 307 -5 2072 99 0 26 chr6 36774319 36774623 -145640619 + AluSg SINE Alu 1 296 -14 262 309 0 12 chr6 36774684 36774765 -145640477 + L2 LINE L2 3193 3272 0 261 228 51 38 chr6 36774913 36774992 -145640250 - MIR SINE MIR -21 241 162 1592 210 64 11 chr6 36775001 36775358 -145639884 + Cheshire DNA MER1_type 1 376 -2044 1351 174 35 41 chr6 36775364 36775557 -145639685 + Cheshire DNA MER1_type 2055 2248 -172 1637 168 16 36 chr6 36775557 36775866 -145639376 - AluJb SINE Alu -9 303 1 2168 105 3 3 chr6 36775876 36776181 -145639061 - AluSq SINE Alu -8 305 1 1351 174 35 41 chr6 36776181 36776216 -145639026 + Cheshire DNA MER1_type 2257 2291 -129 2129 85 3 26 chr6 36776216 36776522 -145638720 + AluSx SINE Alu 1 299 -13 2145 113 0 0 chr6 36776522 36776814 -145638428 + AluSx SINE Alu 1 292 -20 1351 174 35 41 chr6 36776814 36776940 -145638302 + Cheshire DNA MER1_type 2289 2420 0 459 328 0 0 chr6 36776953 36777084 -145638158 - MIR SINE MIR -114 148 18 207 0 0 0 chr6 36781214 36781237 -145634005 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 192 125 0 0 chr6 36784699 36784731 -145630511 - MIR SINE MIR -147 115 84 397 203 70 47 chr6 36784790 36784918 -145630324 - MIR SINE MIR -22 240 110 197 272 54 22 chr6 36787234 36787326 -145627916 - MIR SINE MIR -139 123 29 245 229 0 0 chr6 36788345 36788393 -145626849 + G-rich Low_complexity Low_complexity 1 48 0 186 133 0 0 chr6 36788811 36788841 -145626401 + (TCC)n Simple_repeat Simple_repeat 3 32 0 349 231 46 31 chr6 36790167 36790297 -145624945 - L2 LINE L2 -7 3265 3134 675 233 33 73 chr6 36790632 36790738 -145624504 + Charlie1 DNA MER1_type 5 114 -2647 2429 48 0 0 chr6 36790738 36791033 -145624209 + AluY SINE Alu 2 296 -15 2423 47 0 3 chr6 36791041 36791341 -145623901 + AluY SINE Alu 1 299 -12 675 233 33 73 chr6 36791341 36791470 -145623772 + Charlie1 DNA MER1_type 121 239 -2522 662 149 67 8 chr6 36791454 36791588 -145623654 + Charlie1 DNA MER1_type 2620 2761 0 * 2277 102 0 0 chr6 36791649 36791953 -145623289 + AluSx SINE Alu 1 304 -8 277 339 46 8 chr6 36791980 36792110 -145623132 - L2 LINE L2 -613 2701 2567 678 221 0 0 chr6 36792346 36792491 -145622751 + MER33 DNA MER1_type 1 145 -179 1087 179 0 0 chr6 36792491 36792670 -145622572 - AluJb SINE Alu 0 312 134 252 0 0 0 chr6 36792670 36792698 -145622544 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2242 77 0 7 chr6 36792698 36792984 -145622258 - AluSx SINE Alu -28 284 1 2107 112 16 3 chr6 36792994 36793299 -145621943 - AluSq SINE Alu -4 309 1 270 222 63 0 chr6 36793331 36793346 -145621896 - MER46A DNA MER2_type -73 163 145 790 161 0 0 chr6 36793346 36793470 -145621772 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 940 114 76 11 chr6 36793466 36793490 -145621752 + Tigger4(Zombi) DNA MER2_type 2525 2546 -185 2242 89 13 10 chr6 36793490 36793794 -145621448 + AluSx SINE Alu 1 305 -7 940 114 76 11 chr6 36793794 36793953 -145621289 + Tigger4(Zombi) DNA MER2_type 2546 2720 -11 650 127 16 0 chr6 36793960 36794086 -145621156 + MER33 DNA MER1_type 197 324 0 215 305 42 32 chr6 36794122 36794217 -145621025 - MIR SINE MIR -146 116 21 729 185 90 42 chr6 36796255 36796444 -145618798 + MIR SINE MIR 2 199 -63 338 309 129 0 chr6 36796702 36796841 -145618401 - L2 LINE L2 0 3272 3116 230 336 96 34 chr6 36796904 36797050 -145618192 + L2 LINE L2 2594 2748 -566 2253 96 3 0 chr6 36797053 36797354 -145617888 + AluSp SINE Alu 1 302 -11 2120 136 0 0 chr6 36797364 36797674 -145617568 + AluSx SINE Alu 1 310 -2 871 259 8 51 chr6 36797700 36797750 -145617492 + MIR SINE MIR 19 70 -192 2218 116 7 0 chr6 36797750 36798060 -145617182 - AluSq SINE Alu -1 312 1 871 259 8 51 chr6 36798060 36798264 -145616978 + MIR SINE MIR 70 262 0 1996 101 0 52 chr6 36798401 36798708 -145616534 + AluSq SINE Alu 3 293 -20 1544 117 36 0 chr6 36798985 36799207 -145616035 - MER30 DNA MER1_type 0 230 1 2153 99 35 0 chr6 36799471 36799755 -145615487 + AluSp SINE Alu 1 294 -19 834 129 0 23 chr6 36799780 36799912 -145615330 + FLAM_C SINE Alu 1 129 -4 307 65 0 0 chr6 36799961 36800007 -145615235 - AluJo SINE Alu 0 302 257 1157 195 0 5 chr6 36800015 36800079 -145615163 - AluJo SINE Alu -113 199 136 2450 83 10 0 chr6 36800079 36800380 -145614862 - AluSp SINE Alu -8 305 2 1157 195 0 5 chr6 36800380 36800515 -145614727 - AluJo SINE Alu -176 136 1 2312 121 0 0 chr6 36800581 36800886 -145614356 + AluSx SINE Alu 1 305 -7 1749 146 0 60 chr6 36800895 36801210 -145614032 + AluJb SINE Alu 5 300 -12 2054 114 3 21 chr6 36801391 36801702 -145613540 + AluSq SINE Alu 1 306 0 2229 82 7 4 chr6 36801707 36802024 -145613218 + AluSp SINE Alu 4 321 0 182 277 170 71 chr6 36802182 36802323 -145612919 + MER5B DNA MER1_type 24 178 0 335 264 7 68 chr6 36803393 36803541 -145611701 - MIR3 SINE MIR -20 188 50 582 225 112 6 chr6 36807414 36807583 -145607659 - MIR SINE MIR -56 206 20 254 306 0 35 chr6 36807801 36807945 -145607297 + (CCCCG)n Simple_repeat Simple_repeat 1 139 0 33 0 0 0 chr6 36808009 36808042 -145607200 + GC_rich Low_complexity Low_complexity 1 33 0 1380 91 50 59 chr6 36808582 36808802 -145606440 + AluJb SINE Alu 88 305 -7 268 260 0 0 chr6 36810377 36810450 -145604792 + CT-rich Low_complexity Low_complexity 2 74 0 276 100 0 0 chr6 36810461 36810501 -145604741 + (TCC)n Simple_repeat Simple_repeat 2 41 0 201 313 12 24 chr6 36811938 36812021 -145603221 + GA-rich Low_complexity Low_complexity 4 85 0 410 296 107 0 chr6 36814588 36814757 -145600485 + Charlie2 DNA MER1_type 35 221 -2641 1511 170 24 114 chr6 36814918 36814960 -145600282 - AluJo SINE Alu 0 312 268 2469 71 7 10 chr6 36814960 36815269 -145599973 + AluSc SINE Alu 1 308 -1 1511 170 24 114 chr6 36815269 36815441 -145599801 - AluJo SINE Alu -44 268 138 2517 57 7 0 chr6 36815441 36815738 -145599504 + AluSx SINE Alu 1 299 -13 1511 170 24 114 chr6 36815738 36815863 -145599379 - AluJo SINE Alu -174 138 3 2430 45 0 54 chr6 36815916 36816230 -145599012 + AluY SINE Alu 1 297 -14 647 218 179 24 chr6 36816256 36816520 -145598722 + Charlie2 DNA MER1_type 2328 2654 -208 2062 112 0 55 chr6 36816520 36816832 -145598410 - AluSg SINE Alu -15 295 1 647 218 179 24 chr6 36816832 36816897 -145598345 + Charlie2 DNA MER1_type 2654 2708 -154 2210 122 3 0 chr6 36816899 36817194 -145598048 + AluSx SINE Alu 1 296 -16 2254 100 0 7 chr6 36817196 36817495 -145597747 + AluSx SINE Alu 1 297 -15 2300 98 3 7 chr6 36817497 36817802 -145597440 + AluSg SINE Alu 1 304 -6 640 167 9 9 chr6 36817810 36817924 -145597318 + FLAM_C SINE Alu 9 122 -21 2196 109 10 16 chr6 36817934 36818238 -145597004 + AluSx SINE Alu 1 302 -10 1631 109 17 13 chr6 36818238 36818475 -145596767 + AluSg/x SINE Alu 71 310 0 488 203 31 61 chr6 36818475 36818520 -145596722 + Charlie2 DNA MER1_type 2705 2750 -112 288 70 0 0 chr6 36818520 36818563 -145596679 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1875 114 21 25 chr6 36818566 36818847 -145596395 - AluSx SINE Alu -32 280 1 488 203 31 61 chr6 36818847 36818960 -145596282 + Charlie2 DNA MER1_type 2752 2862 0 2335 92 10 0 chr6 36818964 36819267 -145595975 + AluSp SINE Alu 1 306 -7 214 306 14 0 chr6 36819810 36819882 -145595360 + MIR3 SINE MIR 135 207 -1 2225 131 0 6 chr6 36820340 36820654 -145594588 - AluSx SINE Alu 0 312 1 204 125 0 0 chr6 36820761 36820793 -145594449 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 115 0 19 chr6 36820816 36821128 -145594114 + AluSx SINE Alu 1 306 -6 2373 89 0 25 chr6 36821352 36821668 -145593574 - AluSg SINE Alu 0 310 3 1584 196 7 11 chr6 36821671 36821946 -145593296 - AluJo SINE Alu -33 279 6 2457 58 0 14 chr6 36822022 36822157 -145593085 + AluY SINE Alu 1 136 -175 2539 78 0 0 chr6 36822157 36822463 -145592779 + AluY SINE Alu 1 306 -5 2457 58 0 14 chr6 36822463 36822622 -145592620 + AluY SINE Alu 136 291 -20 244 355 78 14 chr6 36822691 36822832 -145592410 + MIR SINE MIR 47 196 -66 393 258 8 31 chr6 36823026 36823154 -145592088 - L1MC4 LINE L1 0 8042 7918 267 122 0 0 chr6 36823173 36823214 -145592028 + MLT1C LTR MaLR 1 41 -426 2142 126 13 0 chr6 36823241 36823543 -145591699 + AluY SINE Alu 1 306 -5 2049 137 3 13 chr6 36823548 36823854 -145591388 + AluSg SINE Alu 1 303 -7 1680 95 56 0 chr6 36823873 36824125 -145591117 + L1PA11 LINE L1 5908 6173 -1 2399 153 54 14 chr6 36824126 36824350 -145590892 + MLT1C LTR MaLR 27 241 -226 2174 98 0 34 chr6 36824350 36824486 -145590756 + AluSx SINE Alu 1 140 -172 2299 103 23 0 chr6 36824486 36824788 -145590454 + AluSg SINE Alu 1 309 -1 2174 98 0 34 chr6 36824788 36824946 -145590296 + AluSx SINE Alu 140 285 -27 279 0 0 0 chr6 36824946 36824977 -145590265 + (CA)n Simple_repeat Simple_repeat 2 32 0 2399 153 54 14 chr6 36824977 36825175 -145590067 + MLT1C LTR MaLR 240 467 0 523 174 43 105 chr6 36825182 36825271 -145589971 - L1MC4a LINE L1 -223 7585 7492 1864 123 30 4 chr6 36825271 36825539 -145589703 - AluSx SINE Alu -4 308 34 523 174 43 105 chr6 36825539 36825572 -145589670 - L1MC4a LINE L1 -316 7492 7606 1017 168 0 6 chr6 36825572 36825739 -145589503 - FRAM SINE Alu 0 166 1 523 174 43 105 chr6 36825739 36825866 -145589376 - L1MC4a LINE L1 -201 7607 7474 1179 179 0 0 chr6 36825882 36826077 -145589165 - AluJo SINE Alu -1 311 117 2032 135 0 16 chr6 36826077 36826381 -145588861 + AluSg SINE Alu 1 299 -11 1436 206 88 57 chr6 36826395 36826598 -145588644 + MLT1E LTR MaLR 194 389 -204 2229 122 3 0 chr6 36826598 36826909 -145588333 - AluSx SINE Alu 0 312 1 1436 206 88 57 chr6 36826909 36827093 -145588149 + MLT1E LTR MaLR 389 593 0 628 288 7 7 chr6 36827093 36827244 -145587998 - Zaphod DNA AcHobo -3879 152 2 464 220 5 110 chr6 36827259 36827392 -145587850 - Charlie2 DNA MER1_type -5 2857 2748 2282 116 0 0 chr6 36827392 36827685 -145587557 + AluSg SINE Alu 1 293 -17 464 220 5 110 chr6 36827685 36827742 -145587500 - Charlie2 DNA MER1_type -114 2748 2687 2335 82 0 3 chr6 36827743 36828034 -145587208 + AluSc SINE Alu 3 292 -17 2453 71 10 3 chr6 36828036 36828345 -145586897 + AluY SINE Alu 1 311 0 1209 122 6 0 chr6 36828363 36828519 -145586723 + AluSx SINE Alu 1 157 -155 1645 113 0 26 chr6 36828519 36828750 -145586492 - AluSx SINE Alu -87 225 1 358 222 44 44 chr6 36828770 36828860 -145586382 + L1MC4 LINE L1 6613 6702 -1340 2407 88 3 0 chr6 36828861 36829156 -145586086 - AluSp SINE Alu -17 296 1 293 264 23 0 chr6 36829163 36829250 -145585992 + HAL1 LINE L1 822 910 -1597 2340 105 0 3 chr6 36830079 36830393 -145584849 + AluSq SINE Alu 1 313 0 2585 68 0 3 chr6 36830396 36830707 -145584535 + AluY SINE Alu 1 310 -1 2432 109 0 0 chr6 36830895 36831207 -145584035 + AluSx SINE Alu 1 312 0 1468 166 13 102 chr6 36831238 36831375 -145583867 + AluJo SINE Alu 1 149 -163 2111 126 7 13 chr6 36831375 36831676 -145583566 + AluSx SINE Alu 1 299 -13 2028 130 14 10 chr6 36831686 36831979 -145583263 + AluSx SINE Alu 1 294 -18 2442 83 6 13 chr6 36831984 36832296 -145582946 + AluY SINE Alu 1 310 -1 1468 166 13 102 chr6 36832296 36832307 -145582935 + AluJo SINE Alu 162 172 -140 2014 153 16 0 chr6 36832307 36832615 -145582627 + AluSp SINE Alu 1 313 0 1468 166 13 102 chr6 36832615 36832761 -145582481 + AluJo SINE Alu 172 285 -27 1105 143 6 17 chr6 36832763 36832938 -145582304 - AluSq SINE Alu -59 254 82 342 184 10 51 chr6 36832938 36832960 -145582282 + MER69 DNA AcHobo 2428 2449 -77 2157 96 0 14 chr6 36832960 36833241 -145582001 - AluSx SINE Alu -8 304 28 342 184 10 51 chr6 36833241 36833316 -145581926 + MER69 DNA AcHobo 2449 2521 -5 328 275 38 0 chr6 36833339 36833419 -145581823 - L1MCa LINE L1 -4362 2064 1982 2171 128 0 0 chr6 36833471 36833767 -145581475 - AluSg SINE Alu -14 296 1 716 134 0 107 chr6 36833772 36833921 -145581321 - FLAM_C SINE Alu 0 133 1 1870 125 49 35 chr6 36833968 36834256 -145580986 + AluSx SINE Alu 1 292 -20 522 286 5 71 chr6 36834256 36834445 -145580797 - L1MC/D LINE L1 -2153 5655 5478 1386 119 40 0 chr6 36834445 36834646 -145580596 - AluSg/x SINE Alu -8 304 96 946 162 0 24 chr6 36834646 36834813 -145580429 - AluJb SINE Alu -16 296 134 841 120 0 0 chr6 36834927 36835060 -145580182 + L1PA15 LINE L1 6031 6163 -2 1237 86 0 0 chr6 36836121 36836272 -145578970 - AluSg/x SINE Alu -16 294 144 7232 125 3 19 chr6 36836272 36837433 -145577809 + HERVH LTR ERV1 1688 2830 -4883 11600 106 12 37 chr6 36837433 36839271 -145575971 + HERVH LTR ERV1 3357 5149 -2564 * 14042 89 7 42 chr6 36839268 36841171 -145574071 + HERVH LTR ERV1 5594 7563 -150 245 138 28 0 chr6 36841171 36841226 -145574016 - Alu SINE Alu -268 34 1 14042 89 7 42 chr6 36841226 36841249 -145573993 + HERVH LTR ERV1 7563 7585 -128 2271 106 0 26 chr6 36841249 36841561 -145573681 - AluSx SINE Alu -7 305 2 14042 89 7 42 chr6 36841561 36841777 -145573465 + HERVH LTR ERV1 7585 7713 0 1285 178 186 23 chr6 36841777 36842164 -145573078 + LTR7 LTR ERV1 1 450 0 16075 61 3 16 chr6 36842244 36843959 -145571283 - Harlequin LTR ERV1 -2739 4157 2421 2364 82 0 3 chr6 36843959 36844253 -145570989 - AluSx SINE Alu -19 293 1 16075 61 3 16 chr6 36844253 36844330 -145570912 - Harlequin LTR ERV1 -4475 2421 2345 2567 74 3 0 chr6 36844330 36844640 -145570602 - AluY SINE Alu 0 311 1 16075 61 3 16 chr6 36844640 36844665 -145570577 - Harlequin LTR ERV1 -4551 2345 2321 2396 90 3 3 chr6 36844665 36844965 -145570277 - AluSp SINE Alu -13 300 1 16075 61 3 16 chr6 36844965 36845155 -145570087 - Harlequin LTR ERV1 -4575 2321 2175 2304 94 0 26 chr6 36845155 36845462 -145569780 - AluSx SINE Alu -13 299 1 16075 61 3 16 chr6 36845462 36845602 -145569640 - Harlequin LTR ERV1 -4721 2175 2035 1714 100 15 92 chr6 36845611 36845947 -145569295 + LTR14B LTR ERVK 54 606 -2 648 262 38 27 chr6 36845948 36846131 -145569111 - LTR10A-int LTR ERV1 -6464 185 1 1643 177 115 41 chr6 36846140 36846575 -145568667 - LTR10A LTR ERV1 -61 548 82 1556 100 62 147 chr6 36847261 36847601 -145567641 + AluYb8 SINE Alu 1 311 -7 4571 83 18 32 chr6 36847755 36848379 -145566863 - SVA Other Other 0 1386 772 442 278 18 85 chr6 36848379 36848480 -145566762 + MIR SINE MIR 55 134 -128 1948 159 23 7 chr6 36848480 36848782 -145566460 + AluJo SINE Alu 1 307 -5 442 278 18 85 chr6 36848782 36848903 -145566339 + MIR SINE MIR 134 262 0 2370 89 33 0 chr6 36849262 36849571 -145565671 + AluSx SINE Alu 1 319 0 232 238 75 25 chr6 36850038 36850118 -145565124 + MIR SINE MIR 93 176 -86 570 249 103 5 chr6 36851243 36851428 -145563814 + MLT1L LTR MaLR 408 610 -5 2064 126 33 0 chr6 36851441 36851743 -145563499 - AluSq SINE Alu -1 312 1 280 146 0 0 chr6 36851830 36851871 -145563371 - MER57A LTR ERV1 -68 335 295 203 250 33 50 chr6 36851880 36851940 -145563302 - MIR SINE MIR -201 61 3 2600 58 0 3 chr6 36852831 36853141 -145562101 + AluY SINE Alu 1 309 -2 474 331 92 21 chr6 36853545 36853826 -145561416 - L2 LINE L2 -1 3271 2971 2427 92 0 16 chr6 36853934 36854249 -145560993 + AluSg SINE Alu 1 310 0 1953 123 0 53 chr6 36854344 36854645 -145560597 + AluSx SINE Alu 9 293 -19 243 311 8 0 chr6 36854647 36854766 -145560476 + L1 LINE L1 3646 3765 -2381 366 120 0 67 chr6 36854842 36854917 -145560325 - L1MB5 LINE L1 -286 5888 5819 1012 182 11 6 chr6 36854917 36855098 -145560144 - AluJ SINE Alu -11 301 120 669 140 0 35 chr6 36856735 36856849 -145558393 - AluJ SINE Alu -178 134 25 938 161 0 0 chr6 36856878 36857015 -145558227 - AluJb SINE Alu -10 302 166 1302 145 0 0 chr6 36857015 36857222 -145558020 - L1MB5 LINE L1 -360 5824 5618 2299 172 21 38 chr6 36857223 36857267 -145557975 - MER67A LTR ERV1 -2 541 498 2098 123 3 0 chr6 36857267 36857587 -145557655 + AluSx SINE Alu 1 321 0 2299 172 21 38 chr6 36857587 36858010 -145557232 - MER67A LTR ERV1 -45 498 80 2339 89 0 16 chr6 36858012 36858315 -145556927 + AluSq SINE Alu 1 298 -15 2515 70 0 10 chr6 36858321 36858634 -145556608 - AluY SINE Alu -1 310 1 476 273 87 71 chr6 36858762 36858931 -145556311 + L1ME LINE L1 5258 5423 -739 1961 124 6 59 chr6 36858931 36859296 -145555946 + AluSg SINE Alu 1 310 0 476 273 87 71 chr6 36859296 36859664 -145555578 + L1ME LINE L1 5423 5804 -358 1044 132 0 136 chr6 36859669 36859781 -145555461 - MER3 DNA MER1_type 0 209 146 2270 75 18 0 chr6 36859781 36860060 -145555182 + AluSc SINE Alu 1 284 -25 1044 132 0 136 chr6 36860060 36860189 -145555053 - MER3 DNA MER1_type -63 146 1 778 115 26 94 chr6 36860341 36860380 -145554862 + L1MA8 LINE L1 6071 6111 -180 2169 122 0 0 chr6 36860380 36860675 -145554567 + AluSx SINE Alu 6 300 -12 2332 69 7 14 chr6 36860677 36860968 -145554274 + AluY SINE Alu 1 289 -22 207 0 0 0 chr6 36860970 36860993 -145554249 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 778 115 26 94 chr6 36860993 36861138 -145554104 + L1MA8 LINE L1 6113 6248 -43 1547 186 54 3 chr6 36861157 36861453 -145553789 + AluJo SINE Alu 1 311 -1 1791 167 0 14 chr6 36861456 36861777 -145553465 + AluJb SINE Alu 1 317 0 1293 120 77 0 chr6 36861849 36862032 -145553210 + AluSx SINE Alu 1 197 -115 2246 98 11 0 chr6 36862066 36862352 -145552890 - AluSx SINE Alu -23 289 1 464 132 0 0 chr6 36862361 36862429 -145552813 - AluJ/FRAM SINE Alu -14 298 231 1956 149 20 0 chr6 36862455 36862751 -145552491 + AluSq SINE Alu 1 302 -11 1978 209 58 7 chr6 36862773 36863218 -145552024 + MER21B LTR ERV1 347 814 -49 777 107 0 107 chr6 36863748 36863897 -145551345 + FLAM_C SINE Alu 1 133 0 2110 101 0 7 chr6 36863902 36864179 -145551063 + AluSx SINE Alu 24 298 -14 2340 100 10 0 chr6 36864181 36864482 -145550760 + AluSx SINE Alu 1 304 -8 2040 196 141 44 chr6 36864525 36865011 -145550231 + LTR29 LTR ERV1 1 438 -184 228 35 0 0 chr6 36865011 36865040 -145550202 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1759 141 69 0 chr6 36865043 36865305 -145549937 - AluSx SINE Alu -32 280 1 2040 196 141 44 chr6 36865305 36865381 -145549861 + LTR29 LTR ERV1 439 622 0 1766 179 0 23 chr6 36865669 36865884 -145549358 - AluJb SINE Alu -18 294 76 4786 72 19 84 chr6 36865884 36866053 -145549189 - LTR8 LTR ERV1 -2 689 511 2168 124 20 0 chr6 36866053 36866359 -145548883 - AluSx SINE Alu 0 312 1 4786 72 19 84 chr6 36866359 36866651 -145548591 - LTR8 LTR ERV1 -180 511 291 2354 115 0 0 chr6 36866651 36866964 -145548278 - AluSq SINE Alu 0 313 1 4786 72 19 84 chr6 36866964 36867238 -145548004 - LTR8 LTR ERV1 -400 291 1 1766 179 0 23 chr6 36867238 36867323 -145547919 - AluJb SINE Alu -236 76 1 2150 111 0 36 chr6 36867372 36867679 -145547563 + AluSq SINE Alu 1 296 -17 3904 115 13 0 chr6 36867695 36868242 -145547000 - MER41A LTR ERV1 0 554 1 1150 50 15 23 chr6 36868289 36868572 -145546670 + AluY SINE Alu 2 352 0 814 159 0 100 chr6 36868574 36868744 -145546498 - FAM SINE Alu -32 153 1 1107 148 0 34 chr6 36869078 36869254 -145545988 + AluSg/x SINE Alu 123 292 -20 1523 102 0 0 chr6 36869256 36869453 -145545789 + AluSc SINE Alu 1 197 -112 507 114 0 0 chr6 36869453 36869532 -145545710 + AluS SINE Alu 231 309 -3 703 136 24 32 chr6 36869532 36869657 -145545585 + AluSg SINE Alu 8 131 -179 1261 128 0 0 chr6 36869706 36869886 -145545356 + AluSg SINE Alu 119 298 -12 2212 104 3 0 chr6 36869948 36870237 -145545005 + AluSx SINE Alu 1 290 -22 2233 78 0 7 chr6 36870275 36870557 -145544685 - AluSc SINE Alu -12 297 18 805 194 0 8 chr6 36870593 36870609 -145544633 - FLAM_C SINE Alu -169 133 118 192 40 0 0 chr6 36870609 36870634 -145544608 + (TG)n Simple_repeat Simple_repeat 2 26 0 805 194 0 8 chr6 36870634 36870751 -145544491 - FLAM_C SINE Alu -184 118 1 623 320 55 33 chr6 36870821 36871240 -145544002 + L2 LINE L2 2337 2764 -550 1130 135 26 109 chr6 36871268 36871324 -145543918 + LTR51 LTR ERV1 24 83 -588 2441 88 3 3 chr6 36871324 36871632 -145543610 + AluSg SINE Alu 1 308 -2 1130 135 26 109 chr6 36871632 36871841 -145543401 + LTR51 LTR ERV1 83 267 -404 2152 91 11 11 chr6 36871843 36872157 -145543085 - AluSx SINE Alu 0 314 1 849 186 0 0 chr6 36872262 36872402 -145542840 - FLAM_C SINE Alu -3 140 1 548 157 0 0 chr6 36873086 36873169 -145542073 + AluJ/FLAM SINE Alu 2 84 -228 666 274 34 53 chr6 36873169 36873293 -145541949 - MLT1J LTR MaLR -46 465 340 2474 82 0 22 chr6 36873293 36873609 -145541633 - AluSx SINE Alu -1 311 3 666 274 34 53 chr6 36873609 36873884 -145541358 - MLT1J LTR MaLR -171 340 3 307 71 0 0 chr6 36874094 36874136 -145541106 - AluJb SINE Alu -195 107 66 291 383 26 0 chr6 36874444 36874559 -145540683 + L2 LINE L2 3116 3233 -39 2234 102 6 16 chr6 36874604 36874917 -145540325 - AluSg SINE Alu 0 310 1 1919 161 28 0 chr6 36875295 36875586 -145539656 - AluJb SINE Alu -13 299 1 2158 105 7 23 chr6 36875597 36875902 -145539340 - AluSp SINE Alu -13 300 1 2355 96 0 0 chr6 36875902 36876193 -145539049 - AluSq SINE Alu -21 292 1 1627 154 7 32 chr6 36876617 36876897 -145538345 + AluSx SINE Alu 30 302 -10 1362 183 23 108 chr6 36876938 36877337 -145537905 + MLT1A1 LTR MaLR 1 365 0 858 137 0 0 chr6 36877623 36877740 -145537502 + FLAM_C SINE Alu 2 118 -25 22 35 0 0 chr6 36877740 36877769 -145537473 + AT_rich Low_complexity Low_complexity 1 29 0 2156 128 10 19 chr6 36877769 36878082 -145537160 + AluSx SINE Alu 1 310 -2 2260 89 0 0 chr6 36878137 36878417 -145536825 + AluSg SINE Alu 1 280 -30 2172 85 78 0 chr6 36878420 36878702 -145536540 + AluY SINE Alu 1 304 -7 23 0 0 0 chr6 36878714 36878737 -145536505 + AT_rich Low_complexity Low_complexity 1 23 0 201 296 0 0 chr6 36878847 36878918 -145536324 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2119 133 0 10 chr6 36879046 36879346 -145535896 - AluSq SINE Alu -15 298 2 2505 78 7 0 chr6 36879410 36879717 -145535525 - AluSg1 SINE Alu 0 309 1 478 35 0 0 chr6 36879839 36879897 -145535345 - AluSq SINE Alu -122 191 134 2552 51 0 13 chr6 36879898 36880213 -145535029 - AluY SINE Alu 0 311 1 653 285 131 7 chr6 36880287 36880698 -145534544 - L1M4 LINE L1 -1820 4326 3865 23 33 0 0 chr6 36880719 36880749 -145534493 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 196 48 chr6 36881212 36881432 -145533810 + MIR3 SINE MIR 3 250 -12 1229 239 125 30 chr6 36883193 36883757 -145531485 - L2 LINE L2 -4 3309 2713 2047 123 3 23 chr6 36883796 36884106 -145531136 - AluJb SINE Alu -7 305 2 2336 77 3 0 chr6 36884110 36884407 -145530835 - AluY SINE Alu -13 298 1 525 163 10 0 chr6 36884408 36884506 -145530736 + MER20 DNA MER1_type 60 158 -61 369 130 0 0 chr6 36884510 36884564 -145530678 - MER20 DNA MER1_type -165 54 1 2753 227 172 46 chr6 36884566 36884851 -145530391 - L2 LINE L2 -694 2620 2372 2223 110 0 7 chr6 36884851 36885143 -145530099 - AluSx SINE Alu -22 290 1 2753 227 172 46 chr6 36885143 36885836 -145529406 - L2 LINE L2 -942 2372 1519 411 242 118 31 chr6 36886329 36886490 -145528752 - L2 LINE L2 -1 3312 3138 538 252 87 0 chr6 36886608 36886735 -145528507 + FLAM_A SINE Alu 1 138 -4 1009 106 19 50 chr6 36886788 36886949 -145528293 - AluJb SINE Alu -1 311 156 2535 57 0 7 chr6 36887042 36887343 -145527899 - AluY SINE Alu -12 299 1 2040 110 51 7 chr6 36887346 36887638 -145527604 - AluSx SINE Alu -7 305 1 2423 100 0 0 chr6 36887658 36887957 -145527285 - AluSg SINE Alu -11 299 1 188 259 49 62 chr6 36888025 36888106 -145527136 + L2 LINE L2 2839 2918 -395 2313 92 6 19 chr6 36888811 36889127 -145526115 - AluSx SINE Alu 0 312 1 451 189 0 0 chr6 36889395 36889469 -145525773 - MER2 DNA MER2_type 0 345 272 2017 104 42 7 chr6 36889471 36889758 -145525484 + AluSx SINE Alu 5 301 -11 2716 153 49 6 chr6 36889809 36890319 -145524923 - Tigger3b DNA MER2_type -2 1229 698 2400 78 0 20 chr6 36891007 36891313 -145523929 - AluY SINE Alu -11 300 1 443 128 86 8 chr6 36891313 36891430 -145523812 - Tigger3b DNA MER2_type -535 696 571 245 149 0 21 chr6 36891436 36891483 -145523759 + LTR56 LTR ERV1 349 394 -51 2342 108 0 0 chr6 36891489 36891795 -145523447 - AluY SINE Alu -5 306 1 3273 135 47 31 chr6 36891815 36892066 -145523176 - Tigger3b DNA MER2_type -2397 631 386 2449 67 0 13 chr6 36892066 36892366 -145522876 - AluY SINE Alu -15 296 1 3273 135 47 31 chr6 36892366 36892735 -145522507 - Tigger3b DNA MER2_type -2642 386 1 837 146 5 137 chr6 36892735 36892801 -145522441 - MER2 DNA MER2_type -155 190 117 2276 101 0 26 chr6 36892801 36893107 -145522135 + AluSq SINE Alu 1 298 -15 1755 125 12 0 chr6 36893108 36893348 -145521894 + AluSp SINE Alu 42 284 -29 837 146 5 137 chr6 36893348 36893498 -145521744 - MER2 DNA MER2_type -227 118 1 236 312 73 63 chr6 36894800 36895005 -145520237 + L2 LINE L2 2828 3034 -238 375 276 57 8 chr6 36896212 36896335 -145518907 + L2 LINE L2 2836 2964 -350 2025 172 0 0 chr6 36897488 36897791 -145517451 + AluJb SINE Alu 1 303 -9 698 253 54 17 chr6 36897791 36898032 -145517210 - L1MC4a LINE L1 -1946 5862 5613 310 282 43 103 chr6 36898031 36898265 -145516977 - L1MEd LINE L1 -5571 548 329 * 334 256 152 26 chr6 36898439 36898708 -145516534 - L1MC5 LINE L1 -262 7699 7397 651 246 79 9 chr6 36898816 36899044 -145516198 - L1MC5 LINE L1 -747 7214 6971 540 148 0 0 chr6 36899061 36899149 -145516093 - AluJ/FRAM SINE Alu -7 305 218 275 116 0 0 chr6 36899150 36899193 -145516049 - Alu SINE Alu -259 43 1 295 159 190 137 chr6 36899197 36899252 -145515990 - L1MC4a LINE L1 -881 6927 6876 2376 58 24 3 chr6 36899252 36899547 -145515695 + AluY SINE Alu 1 301 -10 295 159 190 137 chr6 36899547 36899670 -145515572 - L1MC4a LINE L1 -932 6876 6730 441 0 0 0 chr6 36900067 36900116 -145515126 + (TG)n Simple_repeat Simple_repeat 2 50 0 383 297 0 0 chr6 36901274 36901385 -145513857 + C-rich Low_complexity Low_complexity 1 111 0 22 35 0 0 chr6 36901615 36901644 -145513598 + GC_rich Low_complexity Low_complexity 1 29 0 2298 109 0 3 chr6 36902242 36902553 -145512689 + AluSg SINE Alu 1 310 0 468 288 60 38 chr6 36903365 36903549 -145511693 + MIR SINE MIR 74 261 -1 28 0 0 0 chr6 36906692 36906720 -145508522 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 15 chr6 36910369 36910435 -145504807 + CT-rich Low_complexity Low_complexity 3 67 0 570 112 8 37 chr6 36910464 36910598 -145504644 + (TCC)n Simple_repeat Simple_repeat 1 130 0 333 314 0 38 chr6 36910703 36910888 -145504354 + G-rich Low_complexity Low_complexity 2 179 0 337 314 26 7 chr6 36911159 36911312 -145503930 + GA-rich Low_complexity Low_complexity 4 159 0 229 258 16 0 chr6 36915768 36915830 -145499412 + GA-rich Low_complexity Low_complexity 2 64 0 275 247 0 26 chr6 36916913 36916990 -145498252 + CT-rich Low_complexity Low_complexity 4 78 0 277 232 0 42 chr6 36917487 36917582 -145497660 + (TG)n Simple_repeat Simple_repeat 2 92 0 307 247 11 22 chr6 36918211 36918300 -145496942 + (CGG)n Simple_repeat Simple_repeat 3 90 0 221 239 28 0 chr6 36918302 36918373 -145496869 + (CCG)n Simple_repeat Simple_repeat 1 73 0 200 247 54 0 chr6 36918328 36918421 -145496821 + (CCGCG)n Simple_repeat Simple_repeat 5 102 0 * 234 252 34 34 chr6 36918476 36918595 -145496647 + G-rich Low_complexity Low_complexity 1 119 0 192 77 0 0 chr6 36918600 36918626 -145496616 + (CGG)n Simple_repeat Simple_repeat 3 28 0 225 325 12 0 chr6 36919333 36919416 -145495826 + GA-rich Low_complexity Low_complexity 3 86 0 281 282 17 17 chr6 36919985 36920102 -145495140 + (TG)n Simple_repeat Simple_repeat 2 118 0 230 245 0 0 chr6 36922687 36922736 -145492506 + GA-rich Low_complexity Low_complexity 1 49 0 246 62 0 0 chr6 36922830 36922862 -145492380 + (TG)n Simple_repeat Simple_repeat 1 32 0 31 26 0 0 chr6 36924053 36924091 -145491151 + GC_rich Low_complexity Low_complexity 1 38 0 198 322 17 0 chr6 36924581 36924640 -145490602 - L2 LINE L2 0 3313 3254 849 137 8 23 chr6 36924872 36925003 -145490239 - FLAM_C SINE Alu -2 131 3 1581 85 163 60 chr6 36925184 36925466 -145489776 + AluSx SINE Alu 1 311 -1 251 292 45 11 chr6 36926203 36926292 -145488950 - L3 LINE CR1 -1 1576 1485 273 197 16 134 chr6 36926303 36926430 -145488812 + MIR3 SINE MIR 97 208 0 * 317 322 231 30 chr6 36926405 36926680 -145488562 - L3 LINE CR1 -336 1241 1022 2299 106 0 0 chr6 36926680 36926981 -145488261 - AluSx SINE Alu -11 301 1 317 322 231 30 chr6 36926981 36927134 -145488108 - L3 LINE CR1 -555 1022 727 1618 209 34 59 chr6 36927150 36927516 -145487726 - MLT1C LTR MaLR -5 462 109 2023 114 3 17 chr6 36927516 36927813 -145487429 - AluSq SINE Alu -20 293 1 1618 209 34 59 chr6 36927813 36927920 -145487322 - MLT1C LTR MaLR -358 109 1 320 274 76 38 chr6 36929368 36929525 -145485717 - L2 LINE L2 -23 3290 3128 2215 105 3 0 chr6 36929932 36930226 -145485016 + AluSp SINE Alu 1 295 -18 306 409 39 18 chr6 36930326 36930607 -145484635 - L2 LINE L2 -725 2589 2303 363 232 21 35 chr6 36930731 36930873 -145484369 + CT-rich Low_complexity Low_complexity 6 145 0 234 62 0 0 chr6 36931041 36931073 -145484169 + (TC)n Simple_repeat Simple_repeat 1 32 0 180 163 0 0 chr6 36931348 36931391 -145483851 + (CAGGG)n Simple_repeat Simple_repeat 3 45 0 441 54 0 0 chr6 36931452 36931508 -145483734 + (TG)n Simple_repeat Simple_repeat 1 56 0 184 224 0 24 chr6 36932865 36932950 -145482292 + CT-rich Low_complexity Low_complexity 4 86 0 246 62 0 0 chr6 36933782 36933814 -145481428 + (CCA)n Simple_repeat Simple_repeat 2 33 0 380 230 0 0 chr6 36934442 36934516 -145480726 - L2 LINE L2 -7 3306 3233 645 165 28 60 chr6 36935705 36935887 -145479355 + MER105 DNA DNA 28 203 -1 524 157 327 19 chr6 36935893 36935998 -145479244 + MER3 DNA MER1_type 2 73 -136 1707 152 0 62 chr6 36935998 36936321 -145478921 - AluJb SINE Alu -9 303 1 524 157 327 19 chr6 36936321 36936374 -145478868 + MER3 DNA MER1_type 73 209 0 242 254 0 0 chr6 36943291 36943350 -145471892 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 36943815 36943860 -145471382 + C-rich Low_complexity Low_complexity 4 49 0 224 321 168 0 chr6 36944435 36944612 -145470630 + MIR SINE MIR 40 253 -9 233 196 0 0 chr6 36946085 36946131 -145469111 + GA-rich Low_complexity Low_complexity 3 48 0 2023 108 0 11 chr6 36948109 36948417 -145466825 - AluY SINE Alu 0 305 1 2159 120 3 0 chr6 36948518 36948827 -145466415 - AluSx SINE Alu -2 310 1 888 143 0 0 chr6 36948829 36948955 -145466287 - AluJo/FLAM SINE Alu -175 127 2 349 339 0 8 chr6 36949580 36949701 -145465541 - LTR67 LTR ERVL -3 554 435 402 209 88 0 chr6 36950431 36950522 -145464720 + MIR SINE MIR 163 261 -1 7375 30 0 1 chr6 36950598 36951456 -145463786 + L1PA3 LINE L1 5296 6152 -3 195 281 62 0 chr6 36951759 36951823 -145463419 + L2 LINE L2 2175 2242 -1072 2405 105 0 9 chr6 36951828 36952143 -145463099 - AluSx SINE Alu 0 312 1 435 298 209 11 chr6 36952332 36952701 -145462541 + L2 LINE L2 2324 2765 -549 481 165 304 0 chr6 36952953 36953068 -145462174 + L1PA16 LINE L1 6006 6155 -11 230 171 0 0 chr6 36953076 36953117 -145462125 + MER41C LTR ERV1 386 426 -128 2199 117 0 0 chr6 36953227 36953533 -145461709 - AluSx SINE Alu 0 306 1 712 179 0 45 chr6 36953536 36953670 -145461572 - AluJo/FLAM SINE Alu -182 130 3 749 324 114 20 chr6 36953885 36954390 -145460852 - L2 LINE L2 -417 2897 2338 2166 101 45 0 chr6 36954390 36954677 -145460565 + AluSx SINE Alu 1 300 -12 749 324 114 20 chr6 36954677 36954708 -145460534 - L2 LINE L2 -976 2338 2311 534 194 75 0 chr6 36954737 36954871 -145460371 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 36954873 36955026 -145460216 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 36955030 36955146 -145460096 - Cheshire DNA MER1_type -146 2274 2162 2267 113 0 0 chr6 36955146 36955446 -145459796 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 36955446 36955618 -145459624 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 36955618 36955970 -145459272 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 36955970 36957543 -145457699 + THE1A-int LTR MaLR 1 1580 0 2582 87 17 22 chr6 36957543 36957900 -145457342 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 36957900 36958012 -145457230 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 36958012 36958301 -145456941 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 36958301 36958569 -145456673 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 36958569 36958869 -145456373 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 36958875 36959201 -145456041 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 36959201 36959543 -145455699 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 36959559 36959686 -145455556 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 36959686 36959997 -145455245 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 36959997 36960780 -145454462 - Cheshire DNA MER1_type -1053 1367 584 2375 84 0 3 chr6 36960780 36961076 -145454166 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 36961076 36961117 -145454125 - Cheshire DNA MER1_type -1836 584 543 2246 105 6 25 chr6 36961117 36961431 -145453811 - AluSx SINE Alu -4 308 1 3783 174 36 38 chr6 36961431 36961457 -145453785 - Cheshire DNA MER1_type -1877 543 518 1879 176 10 0 chr6 36961460 36961767 -145453475 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 36961790 36961858 -145453384 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 36961888 36962085 -145453157 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 36962093 36962128 -145453114 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 36962134 36962292 -145452950 + FRAM SINE Alu 1 160 -16 345 229 7 93 chr6 36962292 36962432 -145452810 + L1MC5 LINE L1 7522 7649 -312 2212 75 0 65 chr6 36962433 36962741 -145452501 - AluSp SINE Alu -4 309 22 22 0 0 0 chr6 36962932 36962954 -145452288 + GC_rich Low_complexity Low_complexity 1 22 0 204 178 0 44 chr6 36963073 36963118 -145452124 + (TGG)n Simple_repeat Simple_repeat 2 44 0 258 316 0 54 chr6 36963935 36964103 -145451139 + G-rich Low_complexity Low_complexity 4 162 0 23 0 0 0 chr6 36970424 36970447 -145444795 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr6 36970504 36970527 -145444715 + (TG)n Simple_repeat Simple_repeat 1 23 0 255 133 0 0 chr6 36973121 36973166 -145442076 + (GGA)n Simple_repeat Simple_repeat 2 46 0 407 242 75 38 chr6 36973690 36973725 -145441517 - MER58A DNA MER1_type -2219 201 169 1736 138 93 13 chr6 36973725 36974037 -145441205 - MER1B DNA MER1_type 0 337 1 407 242 75 38 chr6 36974037 36974187 -145441055 - MER58A DNA MER1_type -2251 169 9 1944 101 54 82 chr6 36974281 36974597 -145440645 - AluSx SINE Alu -5 307 1 524 196 122 20 chr6 36974655 36974803 -145440439 + Tigger1 DNA MER2_type 1 163 -2255 1788 57 102 4 chr6 36976967 36977212 -145438030 + AluY SINE Alu 23 291 -20 197 331 145 24 chr6 36977591 36977715 -145437527 - MER5B DNA MER1_type -37 141 3 959 242 35 27 chr6 36979476 36979732 -145435510 - MIR SINE MIR -2 260 3 211 382 0 30 chr6 36979836 36979967 -145435275 - L2 LINE L2 -683 2631 2505 977 176 11 11 chr6 36980432 36980608 -145434634 - FRAM SINE Alu 0 176 1 1534 102 78 4 chr6 36980837 36981092 -145434150 - THE1C LTR MaLR 0 375 102 1993 126 72 13 chr6 36981226 36981544 -145433698 - MER1B DNA MER1_type 0 337 1 475 200 142 0 chr6 36981552 36981672 -145433570 - MIR SINE MIR -6 256 120 1950 134 0 21 chr6 36982558 36982848 -145432394 - AluSx SINE Alu -24 288 5 276 341 31 16 chr6 36983698 36983827 -145431415 - MIR SINE MIR -6 256 126 320 197 0 0 chr6 36983928 36983989 -145431253 - AluS SINE Alu -240 61 1 2134 124 3 0 chr6 36984015 36984306 -145430936 + AluSg SINE Alu 1 292 -18 1310 218 66 3 chr6 36984646 36984935 -145430307 + AluJo SINE Alu 1 307 -5 395 202 77 48 chr6 36984969 36985073 -145430169 + MER5A DNA MER1_type 80 186 -3 2151 130 0 0 chr6 36985199 36985492 -145429750 + AluSg SINE Alu 1 293 -17 1988 149 7 0 chr6 36985545 36985841 -145429401 + AluSx SINE Alu 1 298 -14 559 222 16 56 chr6 36985863 36985989 -145429253 - FLAM_A SINE Alu -12 121 1 5568 72 33 53 chr6 36986021 36986984 -145428258 + SVA Other Other 25 866 -592 183 80 0 0 chr6 36987092 36987117 -145428125 + (A)n Simple_repeat Simple_repeat 1 25 0 2174 79 3 59 chr6 36987447 36987751 -145427491 - AluSp SINE Alu -20 293 7 210 71 0 0 chr6 36988284 36988312 -145426930 + (T)n Simple_repeat Simple_repeat 1 28 0 1528 124 5 0 chr6 36988513 36988730 -145426512 + AluSg/x SINE Alu 84 301 -9 817 61 0 0 chr6 36988732 36988830 -145426412 + AluSg SINE Alu 1 98 -212 2012 66 8 0 chr6 36988830 36989072 -145426170 + AluSg SINE Alu 54 297 -13 2041 131 24 0 chr6 36992854 36993152 -145422090 + AluSx SINE Alu 1 305 -7 2122 94 3 49 chr6 36993755 36994063 -145421179 + AluSx SINE Alu 1 294 -18 2239 110 7 3 chr6 36994070 36994370 -145420872 + AluSq SINE Alu 1 301 -12 272 157 78 0 chr6 36994380 36994431 -145420811 + L1MB5 LINE L1 6042 6096 -78 691 113 0 0 chr6 36994431 36994528 -145420714 + AluJb SINE Alu 211 307 -5 2496 75 0 0 chr6 36995102 36995407 -145419835 + AluSg SINE Alu 1 305 -5 1107 83 89 0 chr6 36996195 36996352 -145418890 + AluJb SINE Alu 136 306 -6 212 283 0 0 chr6 36996818 36996871 -145418371 + C-rich Low_complexity Low_complexity 1 53 0 1767 154 32 4 chr6 36997729 36998008 -145417234 - AluJo SINE Alu -19 293 7 7278 44 8 0 chr6 36999063 37000574 -145414668 - L1PA4 LINE L1 0 6155 4638 380 296 107 0 chr6 37002519 37002688 -145412554 + Charlie2 DNA MER1_type 35 221 -2641 945 130 36 148 chr6 37002829 37002891 -145412351 - AluJo SINE Alu 0 325 258 2451 71 7 10 chr6 37002891 37003199 -145412043 + AluSc SINE Alu 1 307 -2 945 130 36 148 chr6 37003199 37003372 -145411870 - AluJo SINE Alu -67 258 115 2276 85 3 0 chr6 37003372 37003654 -145411588 + AluSx SINE Alu 1 283 -29 644 204 7 15 chr6 37003667 37003804 -145411438 - MER2 DNA MER2_type -209 136 1 236 312 73 63 chr6 37005105 37005310 -145409932 + L2 LINE L2 2828 3034 -238 384 268 57 8 chr6 37006517 37006640 -145408602 + L2 LINE L2 2836 2964 -350 2025 172 0 0 chr6 37007793 37008096 -145407146 + AluJb SINE Alu 1 303 -9 698 253 54 17 chr6 37008096 37008337 -145406905 - L1MC4a LINE L1 -1946 5862 5613 310 282 43 103 chr6 37008336 37008570 -145406672 - L1MEd LINE L1 -5571 548 329 * 334 256 152 26 chr6 37008744 37009013 -145406229 - L1MC5 LINE L1 -262 7699 7397 651 246 79 9 chr6 37009121 37009349 -145405893 - L1MC5 LINE L1 -747 7214 6971 540 148 0 0 chr6 37009366 37009454 -145405788 - AluJ/FRAM SINE Alu -7 305 218 275 116 0 0 chr6 37009455 37009498 -145405744 - Alu SINE Alu -260 43 1 295 159 190 137 chr6 37009502 37009557 -145405685 - L1MC4a LINE L1 -881 6927 6876 2387 54 24 3 chr6 37009557 37009852 -145405390 + AluY SINE Alu 1 301 -10 295 159 190 137 chr6 37009852 37009975 -145405267 - L1MC4a LINE L1 -932 6876 6730 1508 238 37 17 chr6 37010497 37010904 -145404338 - Zaphod DNA AcHobo -3616 415 1 2182 319 148 43 chr6 37010911 37010949 -145404293 - L2 LINE L2 -943 2371 2338 2368 95 0 3 chr6 37010949 37011253 -145403989 + AluSq SINE Alu 1 303 -10 2182 319 148 43 chr6 37011253 37011932 -145403310 - L2 LINE L2 -976 2338 1732 1749 170 0 65 chr6 37011932 37012255 -145402987 - AluJo SINE Alu -10 302 1 2182 319 148 43 chr6 37012255 37013618 -145401624 - L2 LINE L2 -1582 1732 71 2188 108 7 10 chr6 37013635 37013941 -145401301 + AluSx SINE Alu 1 305 -7 1791 148 76 10 chr6 37013951 37014242 -145401000 + AluSg SINE Alu 1 310 0 280 152 30 0 chr6 37014245 37014311 -145400931 + GA-rich Low_complexity Low_complexity 2 69 0 702 233 71 57 chr6 37014317 37014502 -145400740 + MIR SINE MIR 20 201 -61 2616 102 57 38 chr6 37014502 37014843 -145400399 + MSTA LTR MaLR 1 334 -94 1852 148 28 24 chr6 37014843 37015134 -145400108 - AluJb SINE Alu -19 293 2 2378 100 0 0 chr6 37015141 37015441 -145399801 - AluSx SINE Alu -11 301 2 2616 102 57 38 chr6 37015441 37015511 -145399731 + MSTA LTR MaLR 339 428 0 702 233 71 57 chr6 37015511 37015535 -145399707 + MIR SINE MIR 201 232 -30 2325 118 0 0 chr6 37016202 37016507 -145398735 + AluSq SINE Alu 1 305 -8 1705 161 12 62 chr6 37016635 37016831 -145398411 - AluJb SINE Alu -5 307 132 2350 80 7 0 chr6 37016831 37017120 -145398122 + AluSg SINE Alu 1 291 -19 1705 161 12 62 chr6 37017120 37017246 -145397996 - AluJb SINE Alu -180 132 1 546 241 0 50 chr6 37017840 37017981 -145397261 + MLT1E3 LTR MaLR 55 188 -436 501 32 0 0 chr6 37018573 37018636 -145396606 + (TG)n Simple_repeat Simple_repeat 2 64 0 676 223 42 12 chr6 37018714 37018782 -145396460 - MER97a DNA MER1_type? -718 176 112 2361 102 0 0 chr6 37018782 37019086 -145396156 + AluSx SINE Alu 1 304 -8 676 223 42 12 chr6 37019086 37019183 -145396059 - MER97a DNA MER1_type? -782 112 6 2416 102 0 3 chr6 37019439 37019752 -145395490 + AluSx SINE Alu 1 312 0 1001 195 53 11 chr6 37019818 37020211 -145395031 - Charlie4a DNA MER1_type -1 507 61 918 170 24 24 chr6 37020259 37020424 -145394818 + AluJb SINE Alu 138 302 -10 709 128 16 0 chr6 37020432 37020557 -145394685 + GA-rich Low_complexity Low_complexity 2 128 0 690 124 10 0 chr6 37020568 37020665 -145394577 + AluS SINE Alu 2 99 -214 2529 51 3 0 chr6 37020776 37021072 -145394170 + AluY SINE Alu 1 297 -14 2402 67 0 17 chr6 37021083 37021380 -145393862 + AluY SINE Alu 1 292 -19 664 224 0 8 chr6 37021389 37021514 -145393728 + FLAM_A SINE Alu 2 125 -8 456 211 60 70 chr6 37021809 37021994 -145393248 + L1MC5 LINE L1 5831 6013 -1795 350 129 0 16 chr6 37022104 37022166 -145393076 + AluJ SINE Alu 67 127 -175 992 144 39 0 chr6 37022212 37022365 -145392877 + AluJ SINE Alu 132 290 -22 210 37 0 0 chr6 37022365 37022392 -145392850 + (GA)n Simple_repeat Simple_repeat 2 28 0 2435 93 0 0 chr6 37022414 37022714 -145392528 - AluSc SINE Alu -9 300 1 2208 106 11 0 chr6 37022909 37023231 -145392011 - AluSq SINE Alu 0 325 1 598 273 55 83 chr6 37023232 37023363 -145391879 + L1MC5 LINE L1 6495 6628 -1333 2318 103 0 13 chr6 37023363 37023675 -145391567 + AluY SINE Alu 1 308 -3 598 273 55 83 chr6 37023675 37023695 -145391547 + L1MC5 LINE L1 6628 6647 -1314 1810 164 13 17 chr6 37023695 37023994 -145391248 + AluJb SINE Alu 1 298 -14 598 273 55 83 chr6 37023994 37024028 -145391214 + L1MC5 LINE L1 6647 6680 -1281 207 0 0 0 chr6 37024028 37024051 -145391191 + (CA)n Simple_repeat Simple_repeat 2 24 0 598 273 55 83 chr6 37024051 37024256 -145390986 + L1MC5 LINE L1 6680 6889 -1072 2229 104 23 10 chr6 37024256 37024564 -145390678 + AluSx SINE Alu 1 312 0 598 273 55 83 chr6 37024564 37024831 -145390411 + L1MC5 LINE L1 6889 7046 -915 1896 153 0 29 chr6 37024831 37025139 -145390103 + AluJb SINE Alu 1 299 -13 598 273 55 83 chr6 37025139 37025231 -145390011 + L1MC5 LINE L1 7046 7139 -822 2117 119 17 10 chr6 37025255 37025548 -145389694 - AluSx SINE Alu -17 295 1 283 288 86 23 chr6 37025602 37025859 -145389383 + L1MC4 LINE L1 7150 7422 -620 2326 101 0 22 chr6 37026725 37027042 -145388200 - AluSg SINE Alu 0 310 1 1630 191 32 67 chr6 37027133 37027360 -145387882 - MLT1B LTR MaLR 0 390 182 2133 103 31 0 chr6 37027360 37027650 -145387592 - AluSx SINE Alu -13 299 1 1630 191 32 67 chr6 37027650 37027825 -145387417 - MLT1B LTR MaLR -208 182 2 465 247 67 0 chr6 37028184 37028334 -145386908 - L1M4 LINE L1 -1353 4793 4634 354 248 119 0 chr6 37028337 37028438 -145386804 - L1M4 LINE L1 -1544 4602 4490 1211 99 0 25 chr6 37028443 37028635 -145386607 - AluSg/x SINE Alu 0 310 131 1754 181 38 91 chr6 37028650 37028824 -145386418 - L1MA9 LINE L1 -30 6282 6100 2223 96 7 10 chr6 37028824 37029126 -145386116 + AluSx SINE Alu 1 301 -11 1754 181 38 91 chr6 37029126 37029509 -145385733 - L1MA9 LINE L1 -212 6100 5755 1687 171 16 3 chr6 37029506 37029815 -145385427 + L1M2 LINE L1 5409 5721 -591 * 1633 143 0 123 chr6 37029828 37029972 -145385270 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 37029972 37030261 -145384981 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 37030261 37030458 -145384784 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 37030465 37031145 -145384097 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 37031149 37031220 -145384022 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 37031225 37031388 -145383854 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 37031392 37031447 -145383795 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 37031426 37031534 -145383708 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 37031547 37031819 -145383423 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 37031805 37032252 -145382990 - L1MB4 LINE L1 -4606 2040 1566 7897 20 0 6 chr6 37032252 37033372 -145381870 - L1PA3 LINE L1 0 6155 5041 11002 33 5 116 chr6 37033377 37034935 -145380307 - SVA Other Other 0 1386 2 263 195 0 32 chr6 37034944 37035067 -145380175 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 37035068 37035206 -145380036 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 37035207 37035234 -145380008 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 37035234 37035359 -145379883 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 37035359 37035557 -145379685 + AluJb SINE Alu 109 307 -5 1395 103 0 0 chr6 37035593 37035767 -145379475 - AluSq SINE Alu -20 293 120 1188 163 5 15 chr6 37035777 37035979 -145379263 - AluSg/x SINE Alu 0 312 113 1490 102 0 15 chr6 37035979 37036184 -145379058 - AluSx SINE Alu -110 202 1 429 297 14 0 chr6 37036186 37036347 -145378895 - L1MC5 LINE L1 -1133 6909 6668 297 333 86 27 chr6 37036449 37036519 -145378723 + MIR SINE MIR 66 130 -132 2058 226 42 22 chr6 37036519 37037069 -145378173 - MER34B LTR ERV1 0 565 5 297 333 86 27 chr6 37037069 37037184 -145378058 + MIR SINE MIR 130 262 0 2382 82 0 3 chr6 37037554 37037848 -145377394 - AluSc SINE Alu -16 293 1 221 310 121 9 chr6 37039342 37039458 -145375784 + MIR SINE MIR 133 261 -1 1997 161 3 7 chr6 37039810 37040114 -145375128 - AluJo SINE Alu -9 303 1 1959 161 73 3 chr6 37040294 37040635 -145374607 - MLT1A1 LTR MaLR 0 365 1 2231 109 0 0 chr6 37040641 37040958 -145374284 - AluSx SINE Alu 0 317 1 365 271 14 129 chr6 37041357 37041452 -145373790 - L1M4 LINE L1 -3239 2907 2847 2480 86 0 13 chr6 37041452 37041765 -145373477 - AluSc SINE Alu 0 309 1 365 271 14 129 chr6 37041765 37041879 -145373363 - L1M4 LINE L1 -3299 2847 2722 240 239 0 0 chr6 37042158 37042204 -145373038 + MIR SINE MIR 17 62 -200 675 268 29 83 chr6 37042204 37042625 -145372617 - MLT1J LTR MaLR -3 508 111 267 128 0 0 chr6 37042724 37042763 -145372479 + MIR SINE MIR 70 108 -154 188 256 333 34 chr6 37044094 37044211 -145371031 - MIR3 SINE MIR -27 181 30 233 234 31 0 chr6 37044659 37044723 -145370519 + (CA)n Simple_repeat Simple_repeat 1 66 0 3013 183 50 44 chr6 37044771 37045493 -145369749 + MER21B LTR ERV1 1 726 -137 1763 193 37 82 chr6 37045493 37045817 -145369425 - MER49 LTR ERV1 0 903 566 1536 165 27 0 chr6 37045817 37046078 -145369164 - AluJo SINE Alu -11 301 34 1763 193 37 82 chr6 37046078 37046416 -145368826 - MER49 LTR ERV1 -337 566 1 268 246 109 58 chr6 37046560 37046698 -145368544 + MLT1J LTR MaLR 5 149 -393 800 208 160 73 chr6 37047235 37047548 -145367694 - MLT1J LTR MaLR -152 359 20 423 244 87 9 chr6 37048594 37048709 -145366533 - MIR SINE MIR -116 146 23 2359 104 3 3 chr6 37048887 37049194 -145366048 + AluSq SINE Alu 1 307 -6 361 278 16 48 chr6 37049246 37049372 -145365870 + L2 LINE L2 2915 3036 -236 627 204 53 13 chr6 37049373 37049525 -145365717 + L1ME LINE L1 5540 5697 -469 * 2705 181 75 6 chr6 37049517 37050044 -145365198 - L1M4 LINE L1 -374 5804 5315 2178 125 3 49 chr6 37050044 37050371 -145364871 - AluSx SINE Alu 0 312 1 2705 181 75 6 chr6 37050371 37050837 -145364405 - L1M4 LINE L1 -863 5315 4747 722 312 93 14 chr6 37050889 37051242 -145364000 - MER90 LTR ERV1 -2 573 193 245 309 49 0 chr6 37051508 37051589 -145363653 + MIR3 SINE MIR 114 198 -10 360 0 0 0 chr6 37052438 37052478 -145362764 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr6 37052479 37052499 -145362743 + (GA)n Simple_repeat Simple_repeat 1 20 0 440 229 165 58 chr6 37054010 37054198 -145361044 - MER63A DNA MER1_type 0 210 3 564 207 73 33 chr6 37055034 37055184 -145360058 - MLT1J LTR MaLR -163 348 193 2172 116 3 0 chr6 37055895 37056205 -145359037 - AluSx SINE Alu -1 311 1 2302 140 93 20 chr6 37056900 37057299 -145357943 - MSTC LTR MaLR 0 428 1 426 319 26 44 chr6 37058045 37058271 -145356971 + L2 LINE L2 3092 3313 0 198 179 0 0 chr6 37059447 37059503 -145355739 + CT-rich Low_complexity Low_complexity 1 56 0 200 341 0 67 chr6 37059814 37059949 -145355293 + L2 LINE L2 2967 3092 -180 333 190 254 14 chr6 37060312 37060454 -145354788 + MLT1J LTR MaLR 236 411 -100 7386 87 8 21 chr6 37062084 37063156 -145352086 + MER11C LTR ERVK 1 1057 -14 1809 188 108 22 chr6 37064561 37064977 -145350265 - MER66A LTR ERV1 0 478 27 584 280 107 48 chr6 37066534 37066870 -145348372 - L2 LINE L2 0 3313 2958 240 35 0 0 chr6 37070117 37070146 -145345096 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 660 276 81 18 chr6 37071185 37071571 -145343671 - L1ME3A LINE L1 -1 6161 5718 288 351 84 28 chr6 37072270 37072555 -145342687 + L2 LINE L2 1860 2160 -1154 232 308 56 0 chr6 37073169 37073276 -145341966 - LTR33 LTR ERVL -237 284 172 371 105 0 0 chr6 37076817 37076874 -145338368 + L2 LINE L2 3257 3313 0 302 338 117 37 chr6 37078101 37078453 -145336789 - L1ME4a LINE L1 -194 5927 5548 356 289 175 6 chr6 37078941 37079107 -145336135 - L2 LINE L2 0 3313 3120 222 316 29 52 chr6 37084763 37084899 -145330343 - L2 LINE L2 -7 3306 3174 922 150 41 77 chr6 37084916 37085136 -145330106 + REP3 LTR ERV 26 237 -325 191 154 0 19 chr6 37086355 37086407 -145328835 + C-rich Low_complexity Low_complexity 3 53 0 5850 68 17 11 chr6 37088358 37089119 -145326123 - MER4E LTR ERV1 0 766 1 187 357 12 24 chr6 37089797 37089881 -145325361 + L2 LINE L2 3144 3226 -46 318 203 0 0 chr6 37091328 37091387 -145323855 - MIR3 SINE MIR -41 167 109 549 335 45 0 chr6 37092042 37092218 -145323024 - MIR3 SINE MIR -11 197 14 1181 130 0 0 chr6 37093060 37093229 -145322013 - AluSc SINE Alu -13 296 128 236 294 160 17 chr6 37094036 37094155 -145321087 + MIR3 SINE MIR 2 137 -71 2772 150 14 0 chr6 37095346 37095767 -145319475 - MER1A DNA MER1_type -102 427 1 2178 89 0 0 chr6 37096486 37096768 -145318474 + AluSx SINE Alu 1 282 -30 297 68 0 0 chr6 37096768 37096812 -145318430 + (CTAAA)n Simple_repeat Simple_repeat 3 46 0 867 88 0 16 chr6 37097456 37097581 -145317661 - AluSg/x SINE Alu -14 296 174 4772 42 24 2 chr6 37098321 37098899 -145316343 - LTR10C LTR ERV1 0 591 1 203 120 13 67 chr6 37099119 37099194 -145316048 + (GGGGA)n Simple_repeat Simple_repeat 4 74 0 1477 175 39 111 chr6 37099226 37099711 -145315531 - LTR7 LTR ERV1 0 450 1 228 313 172 30 chr6 37100010 37100144 -145315098 + MIR3 SINE MIR 36 188 -20 265 330 0 22 chr6 37103333 37103424 -145311818 - L2 LINE L2 -1 3312 3224 393 86 0 0 chr6 37104476 37104534 -145310708 + (CA)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr6 37104658 37104679 -145310563 + (CA)n Simple_repeat Simple_repeat 2 22 0 241 250 167 0 chr6 37105320 37105392 -145309850 + MIR SINE MIR 84 167 -95 4947 82 22 1 chr6 37105428 37106075 -145309167 - PABL_A LTR ERV1 0 660 1 369 280 46 46 chr6 37107634 37107809 -145307433 - MIR3 SINE MIR -2 206 32 213 211 0 19 chr6 37108468 37108520 -145306722 + G-rich Low_complexity Low_complexity 4 54 0 181 119 48 0 chr6 37109360 37109402 -145305840 + CT-rich Low_complexity Low_complexity 4 47 0 186 133 0 0 chr6 37110228 37110258 -145304984 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 543 167 0 0 chr6 37110684 37110774 -145304468 - AluJ/FRAM SINE Alu -6 306 217 * 636 169 102 0 chr6 37110772 37110890 -145304352 - AluJo/FLAM SINE Alu -182 130 1 2321 84 0 7 chr6 37111279 37111587 -145303655 - AluSg SINE Alu 0 310 5 314 238 0 0 chr6 37111910 37111990 -145303252 + LTR67 LTR ERVL 476 555 -2 194 244 0 0 chr6 37112013 37112054 -145303188 - MIR SINE MIR -159 103 63 2111 117 36 6 chr6 37112901 37113260 -145301982 + THE1C LTR MaLR 6 375 0 257 273 36 57 chr6 37113624 37113818 -145301424 - MER112 DNA MER1_type -32 228 39 182 193 18 0 chr6 37114027 37114084 -145301158 + (CA)n Simple_repeat Simple_repeat 2 59 0 3783 184 160 59 chr6 37114137 37115064 -145300178 - LTR28 LTR ERV1 0 1020 1 335 244 0 6 chr6 37115068 37115248 -145299994 + (CA)n Simple_repeat Simple_repeat 1 179 0 235 216 0 0 chr6 37115260 37115311 -145299931 + (CA)n Simple_repeat Simple_repeat 1 51 0 237 365 21 7 chr6 37116648 37116793 -145298449 + MLT1K LTR MaLR 134 280 -308 383 250 69 62 chr6 37116974 37117118 -145298124 - MIR SINE MIR -10 252 108 261 316 40 46 chr6 37117911 37118085 -145297157 + LTR67 LTR ERVL 122 294 -263 252 323 39 8 chr6 37118235 37118365 -145296877 + LTR67 LTR ERVL 383 516 -41 334 295 66 24 chr6 37118681 37118847 -145296395 - LTR67 LTR ERVL -11 546 374 371 300 39 8 chr6 37119332 37119462 -145295780 - LTR67 LTR ERVL -35 522 389 273 344 70 25 chr6 37119619 37119776 -145295466 - LTR67 LTR ERVL -390 167 4 206 264 16 99 chr6 37119857 37119978 -145295264 + L2 LINE L2 3161 3271 -1 504 335 76 10 chr6 37120210 37120407 -145294835 + MIR SINE MIR 24 233 -29 474 279 145 12 chr6 37120438 37120610 -145294632 - MIR SINE MIR -39 223 29 273 279 25 0 chr6 37120819 37120898 -145294344 - L2 LINE L2 -182 3090 3010 641 221 19 77 chr6 37120910 37121118 -145294124 - L1ME1 LINE L1 -5 6161 5966 21 57 0 0 chr6 37121185 37121220 -145294022 + AT_rich Low_complexity Low_complexity 1 35 0 187 323 192 0 chr6 37121804 37121903 -145293339 + MIR3 SINE MIR 67 184 -24 204 301 41 0 chr6 37123569 37123642 -145291600 + MIR3 SINE MIR 104 179 -29 207 0 0 0 chr6 37125184 37125207 -145290035 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2104 99 0 3 chr6 37125209 37125492 -145289750 - AluSx SINE Alu -30 282 1 626 201 67 27 chr6 37125493 37125642 -145289600 - MIR SINE MIR -97 165 11 570 304 110 13 chr6 37125656 37125883 -145289359 - MIR SINE MIR -1 261 13 2090 127 10 16 chr6 37126576 37126890 -145288352 - AluSx SINE Alu 0 312 1 270 258 0 0 chr6 37127930 37127996 -145287246 - L2 LINE L2 -330 2983 2918 287 327 91 0 chr6 37129046 37129156 -145286086 - MIR3 SINE MIR -80 128 9 295 282 12 12 chr6 37129491 37129576 -145285666 - MIR SINE MIR -149 113 29 309 242 178 37 chr6 37129635 37129836 -145285406 - MIR3 SINE MIR -3 205 3 236 365 56 47 chr6 37129986 37130200 -145285042 + MIR SINE MIR 41 256 -6 215 235 103 0 chr6 37131102 37131170 -145284072 - L2 LINE L2 -48 3224 3150 523 244 47 0 chr6 37131342 37131469 -145283773 - MIR3 SINE MIR -25 183 51 1978 93 97 4 chr6 37131848 37132126 -145283116 - AluSx SINE Alu -8 304 1 497 302 13 25 chr6 37132134 37132293 -145282949 + MER5A DNA MER1_type 5 161 -28 3112 236 35 8 chr6 37132320 37133318 -145281924 - L1ME3A LINE L1 -24 6146 5121 381 186 172 48 chr6 37134143 37134288 -145280954 + MER103 DNA DNA 3 165 -1 229 281 0 62 chr6 37134682 37134778 -145280464 + GA-rich Low_complexity Low_complexity 5 94 0 473 232 77 41 chr6 37134778 37134885 -145280357 - LTR33 LTR ERVL -17 504 385 2117 129 3 0 chr6 37134885 37135187 -145280055 + AluSq SINE Alu 1 303 -10 473 232 77 41 chr6 37135187 37135273 -145279969 - LTR33 LTR ERVL -136 385 304 2191 150 36 22 chr6 37135277 37135636 -145279606 - THE1B LTR MaLR 0 364 1 295 186 0 0 chr6 37135714 37135773 -145279469 - LTR33 LTR ERVL -346 175 117 299 269 21 21 chr6 37137099 37137192 -145278050 - L2 LINE L2 -174 3098 3006 217 220 85 0 chr6 37137349 37137408 -145277834 - L2 LINE L2 -217 3055 2992 212 329 66 0 chr6 37138424 37138500 -145276742 - MIR SINE MIR -123 139 59 1127 223 129 59 chr6 37141723 37142195 -145273047 + MLT1D LTR MaLR 1 505 0 761 259 35 24 chr6 37142206 37142461 -145272781 + MLT1K LTR MaLR 330 587 -1 238 192 103 26 chr6 37142468 37142546 -145272696 + L1ME LINE L1 5581 5664 -457 307 281 246 0 chr6 37142548 37142662 -145272580 + L1ME LINE L1 5688 5829 -292 482 51 0 0 chr6 37142792 37142851 -145272391 - Alu SINE Alu -19 290 232 608 348 98 66 chr6 37142911 37143407 -145271835 - L1MC4a LINE L1 -1744 6064 5535 1968 87 11 35 chr6 37143407 37143693 -145271549 + AluSc SINE Alu 1 279 -30 608 348 98 66 chr6 37143693 37143940 -145271302 - L1MC4a LINE L1 -2273 5535 5297 336 265 43 17 chr6 37144130 37144247 -145270995 + MLT1K LTR MaLR 180 299 -289 352 268 138 0 chr6 37145177 37145315 -145269927 - MIR3 SINE MIR -22 186 30 203 343 110 20 chr6 37145504 37145650 -145269592 - L2 LINE L2 -86 3186 3028 10055 25 3 171 chr6 37145844 37147509 -145267733 + SVA Other Other 1 1386 0 260 333 0 0 chr6 37147591 37147672 -145267570 + (CA)n Simple_repeat Simple_repeat 1 81 0 203 0 37 0 chr6 37147706 37147733 -145267509 + (CTCTG)n Simple_repeat Simple_repeat 5 32 0 535 300 99 0 chr6 37148079 37148332 -145266910 - LTR16A LTR ERVL -7 443 166 646 229 35 6 chr6 37149102 37149272 -145265970 + MER104 DNA Tc2 1 175 -5 846 304 162 8 chr6 37150917 37151584 -145263658 - L2 LINE L2 -71 3242 2484 877 237 42 31 chr6 37151585 37152073 -145263169 - MLT1H1 LTR MaLR -2 593 1 228 280 13 13 chr6 37152079 37152154 -145263088 - L2 LINE L2 -835 2479 2405 262 286 86 0 chr6 37152192 37152297 -145262945 + MIR3 SINE MIR 81 194 -14 248 220 0 0 chr6 37152927 37152977 -145262265 - MER5A DNA MER1_type -114 75 26 341 191 29 0 chr6 37153179 37153247 -145261995 + MIR SINE MIR 80 149 -113 317 262 13 67 chr6 37153258 37153407 -145261835 + G-rich Low_complexity Low_complexity 2 142 0 471 35 0 0 chr6 37153697 37153754 -145261488 + (TTA)n Simple_repeat Simple_repeat 2 58 0 325 326 45 15 chr6 37154493 37154625 -145260617 + L2 LINE L2 2933 3068 -204 710 240 15 31 chr6 37154878 37155074 -145260168 + L2 LINE L2 3109 3301 -12 186 274 0 48 chr6 37155375 37155437 -145259805 - MIR SINE MIR -93 115 57 298 210 319 0 chr6 37155652 37155771 -145259471 - MER5A DNA MER1_type -32 157 1 203 208 21 21 chr6 37155975 37156023 -145259219 - L2 LINE L2 0 3313 3266 198 297 54 27 chr6 37156996 37157070 -145258172 - L3b LINE CR1 -4 1579 1504 296 274 57 47 chr6 37157171 37157209 -145258033 - MIR SINE MIR -60 148 112 2586 156 2 5 chr6 37157209 37157606 -145257636 - MSTD LTR MaLR 0 396 1 296 274 57 47 chr6 37157606 37157673 -145257569 - MIR SINE MIR -96 112 42 222 245 10 59 chr6 37158312 37158414 -145256828 + CT-rich Low_complexity Low_complexity 1 97 0 225 0 0 0 chr6 37159338 37159363 -145255879 + (CA)n Simple_repeat Simple_repeat 2 26 0 582 269 40 24 chr6 37159384 37159633 -145255609 - L1MC5 LINE L1 -95 7866 7614 271 318 47 68 chr6 37160181 37160373 -145254869 + L2 LINE L2 3022 3209 -63 190 339 17 0 chr6 37160532 37160591 -145254651 - L2 LINE L2 0 3272 3213 324 275 30 78 chr6 37160836 37161003 -145254239 - MIR SINE MIR -56 206 48 192 125 0 0 chr6 37162611 37162643 -145252599 + (A)n Simple_repeat Simple_repeat 1 32 0 2342 99 0 0 chr6 37162908 37163220 -145252022 + AluSx SINE Alu 1 312 0 671 252 104 94 chr6 37163301 37163789 -145251453 + LTR33A LTR ERVL 29 521 -2 258 316 13 53 chr6 37163791 37163943 -145251299 + L2 LINE L2 2327 2472 -842 28 0 0 0 chr6 37166324 37166352 -145248890 + GC_rich Low_complexity Low_complexity 1 28 0 8091 49 9 0 chr6 37168527 37169487 -145245755 + LTR5 LTR ERVK 1 969 0 368 354 13 6 chr6 37171357 37171515 -145243727 - L3 LINE CR1 -777 800 642 22 0 0 0 chr6 37172730 37172752 -145242490 + AT_rich Low_complexity Low_complexity 1 22 0 648 242 79 6 chr6 37172755 37172920 -145242322 + MIR SINE MIR 29 205 -57 1013 211 106 3 chr6 37172965 37173249 -145241993 - MER58B DNA MER1_type -3 338 26 1631 173 20 7 chr6 37173432 37173727 -145241515 - AluJo SINE Alu -13 299 1 333 247 65 0 chr6 37174579 37174656 -145240586 + MIR SINE MIR 98 179 -83 2269 103 0 0 chr6 37175849 37176151 -145239091 + AluSg SINE Alu 9 310 0 225 296 144 8 chr6 37178089 37178214 -145237028 - MIR3 SINE MIR -30 178 37 578 227 23 0 chr6 37180606 37180734 -145234508 - L2 LINE L2 -257 3056 2926 2168 270 88 44 chr6 37181063 37182228 -145233014 - L2 LINE L2 0 3313 2093 204 256 139 0 chr6 37182222 37182308 -145232934 - MIR SINE MIR -77 131 34 * 288 276 31 51 chr6 37182619 37182717 -145232525 - MIR3 SINE MIR -3 205 110 888 230 46 65 chr6 37183053 37183272 -145231970 + MIR SINE MIR 7 222 -40 1910 19 0 0 chr6 37183272 37183487 -145231755 + AluY SINE Alu 85 299 -12 888 230 46 65 chr6 37183487 37183528 -145231714 + MIR SINE MIR 222 262 0 206 217 133 33 chr6 37184411 37184471 -145230771 - MIR SINE MIR -124 138 73 320 272 233 7 chr6 37184869 37185058 -145230184 - MIR SINE MIR 0 262 26 427 283 196 5 chr6 37189370 37189554 -145225688 - MIR SINE MIR -32 230 12 224 276 11 69 chr6 37189948 37190035 -145225207 - L2 LINE L2 0 3272 3191 261 0 0 0 chr6 37190084 37190113 -145225129 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr6 37190294 37190322 -145224920 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr6 37190543 37190573 -145224669 + GC_rich Low_complexity Low_complexity 1 30 0 373 280 70 57 chr6 37192358 37192515 -145222727 - MIR SINE MIR -63 145 6 558 227 182 0 chr6 37196277 37196431 -145218811 + MER5A DNA MER1_type 8 189 0 252 315 78 98 chr6 37196639 37196934 -145218308 - L2 LINE L2 -32 3240 2952 389 249 21 0 chr6 37198817 37198910 -145216332 - MIR3 SINE MIR -38 170 75 295 298 32 16 chr6 37203028 37203152 -145212090 - MLT1L LTR MaLR -324 291 166 498 344 21 27 chr6 37203546 37203732 -145211510 - MIR SINE MIR -2 260 76 1925 148 10 0 chr6 37203832 37204129 -145211113 + AluJo SINE Alu 1 300 -12 252 322 93 0 chr6 37204326 37204444 -145210798 + MIR SINE MIR 55 183 -79 243 0 0 0 chr6 37204449 37204476 -145210766 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 530 328 11 11 chr6 37204481 37204658 -145210584 - L2 LINE L2 -10 3303 3127 2221 114 0 0 chr6 37204717 37205016 -145210226 + AluSx SINE Alu 1 299 -13 2030 88 0 0 chr6 37205016 37205278 -145209964 + AluSg SINE Alu 40 301 -9 317 310 94 8 chr6 37208326 37208498 -145206744 + MIR SINE MIR 1 185 -65 210 216 56 89 chr6 37210020 37210121 -145205121 + MIR SINE MIR 27 124 -95 426 266 0 0 chr6 37210137 37210231 -145205011 + L2 LINE L2 3220 3313 0 1844 141 35 0 chr6 37210272 37210562 -145204680 - AluJb SINE Alu -12 300 1 232 309 40 60 chr6 37211601 37211750 -145203492 + MIR3 SINE MIR 15 160 -48 589 295 131 9 chr6 37211792 37212211 -145203031 + MLT1H1 LTR MaLR 2 556 -39 732 216 7 0 chr6 37212220 37212373 -145202869 - L1MD2 LINE L1 -14 6345 6192 372 43 0 0 chr6 37212414 37212460 -145202782 + (TG)n Simple_repeat Simple_repeat 1 46 0 226 200 22 0 chr6 37212471 37212537 -145202705 + MLT1F1 LTR MaLR 475 567 0 919 266 103 3 chr6 37213127 37213428 -145201814 + MLT1I LTR MaLR 53 383 -26 2304 69 7 0 chr6 37214141 37214430 -145200812 - AluY SINE Alu 0 311 21 180 111 0 0 chr6 37214490 37214517 -145200725 + (TG)n Simple_repeat Simple_repeat 1 27 0 545 279 0 21 chr6 37214614 37214754 -145200488 + L3 LINE CR1 685 821 -756 522 321 189 13 chr6 37215413 37215715 -145199527 + L3 LINE CR1 1221 1575 -2 489 308 137 9 chr6 37216619 37216846 -145198396 + MIR SINE MIR 6 261 -1 436 342 26 45 chr6 37216853 37217119 -145198123 + L3 LINE CR1 1301 1561 -16 2243 106 0 0 chr6 37218623 37218925 -145196317 + AluSc SINE Alu 3 304 -5 2244 97 0 31 chr6 37219545 37219865 -145195377 - AluY SINE Alu -1 310 1 957 277 143 48 chr6 37219897 37219917 -145195325 - HAL1 LINE L1 -5 2502 2485 1238 137 189 12 chr6 37219917 37220165 -145195077 + AluSg1 SINE Alu 1 292 -17 957 277 143 48 chr6 37220165 37220548 -145194694 - HAL1 LINE L1 -22 2485 2139 2157 123 3 0 chr6 37220548 37220858 -145194384 + AluSx SINE Alu 1 311 -1 957 277 143 48 chr6 37220858 37220912 -145194330 - HAL1 LINE L1 -368 2139 2091 1426 122 72 89 chr6 37220912 37221216 -145194026 - AluJb SINE Alu -13 299 1 957 277 143 48 chr6 37221216 37221500 -145193742 - HAL1 LINE L1 -416 2091 1689 349 286 57 64 chr6 37221617 37221757 -145193485 - HAL1 LINE L1 -2317 190 52 256 218 55 0 chr6 37221829 37221884 -145193358 + L2 LINE L2 3215 3272 0 327 247 24 35 chr6 37221975 37222060 -145193182 - HAL1 LINE L1 -319 2188 2105 458 250 33 17 chr6 37222602 37222722 -145192520 + MIR SINE MIR 46 167 -41 215 295 156 0 chr6 37222684 37222806 -145192436 + L2 LINE L2 2520 2660 -654 * 225 234 0 0 chr6 37222847 37222894 -145192348 + MER45 DNA AcHobo 1526 1572 -9 736 278 153 21 chr6 37222975 37223283 -145191959 + L2 LINE L2 2826 3209 -104 2063 123 3 0 chr6 37223283 37223604 -145191638 + AluSp SINE Alu 1 322 0 736 278 153 21 chr6 37223604 37223725 -145191517 + L2 LINE L2 3209 3313 0 252 157 39 0 chr6 37223887 37223938 -145191304 - MER53 DNA DNA -135 54 2 632 209 14 14 chr6 37224479 37224618 -145190624 + MIR SINE MIR 113 251 -11 197 336 48 10 chr6 37225211 37225315 -145189927 + MIR SINE MIR 35 142 -66 361 221 3 8 chr6 37225321 37225340 -145189902 + AluJ/FLAM SINE Alu 1 19 -283 2328 53 0 3 chr6 37225340 37225650 -145189592 + AluY SINE Alu 3 311 0 361 221 3 8 chr6 37225650 37225717 -145189525 + AluJ/FLAM SINE Alu 19 67 -235 424 321 78 12 chr6 37225826 37226069 -145189173 + L2 LINE L2 2843 3101 -171 1334 200 95 3 chr6 37226229 37226514 -145188728 + AluJb SINE Alu 1 311 -1 636 253 71 27 chr6 37226514 37226731 -145188511 - MIR SINE MIR -5 257 28 472 323 26 42 chr6 37226741 37226933 -145188309 + MIR3 SINE MIR 13 201 -7 466 276 0 0 chr6 37227735 37227840 -145187402 + MIR SINE MIR 119 223 -39 324 0 0 0 chr6 37227927 37227963 -145187279 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 358 77 35 chr6 37228768 37229081 -145186161 - L2 LINE L2 0 3272 2947 538 280 123 23 chr6 37229090 37229351 -145185891 - L2 LINE L2 -530 2784 2498 429 297 0 0 chr6 37229609 37229710 -145185532 + MIR SINE MIR 123 223 -39 846 180 6 55 chr6 37230779 37230962 -145184280 - AluJb SINE Alu -4 308 135 220 196 59 0 chr6 37232357 37232408 -145182834 + CT-rich Low_complexity Low_complexity 1 54 0 215 333 83 9 chr6 37233375 37233483 -145181759 - MER5B DNA MER1_type -25 153 38 315 289 28 78 chr6 37233483 37233625 -145181617 - L1MC5 LINE L1 -32 7929 7795 279 192 0 0 chr6 37234912 37234985 -145180257 + (CA)n Simple_repeat Simple_repeat 1 73 0 280 331 15 53 chr6 37237194 37237327 -145177915 + MIR SINE MIR 14 141 -121 2457 60 3 16 chr6 37237460 37237777 -145177465 - AluSp SINE Alu 0 313 1 2213 113 0 13 chr6 37237777 37238087 -145177155 - AluSx SINE Alu -4 308 2 451 206 29 0 chr6 37238144 37238246 -145176996 - MLT1I LTR MaLR 0 409 305 316 239 110 9 chr6 37240599 37240708 -145174534 + MIR SINE MIR 23 142 -66 887 228 42 33 chr6 37240734 37240975 -145174267 + MIR SINE MIR 9 251 -11 195 369 117 0 chr6 37242320 37242431 -145172811 + MIR SINE MIR 20 143 -65 536 293 62 43 chr6 37242494 37242702 -145172540 - MIR SINE MIR 0 262 51 2242 74 0 3 chr6 37242742 37243045 -145172197 + AluSx SINE Alu 1 302 0 22 35 0 0 chr6 37243223 37243252 -145171990 + AT_rich Low_complexity Low_complexity 1 29 0 1921 143 10 0 chr6 37243283 37243576 -145171666 + AluJb SINE Alu 1 296 -16 195 286 18 0 chr6 37245141 37245197 -145170045 + MER5A DNA MER1_type 61 117 -72 2487 74 0 0 chr6 37245217 37245527 -145169715 - AluSp SINE Alu -3 310 1 761 282 24 5 chr6 37246668 37246881 -145168361 - MIR SINE MIR -32 230 14 188 211 0 0 chr6 37246961 37246999 -145168243 - MIR SINE MIR -93 115 78 216 328 0 0 chr6 37248676 37248734 -145166508 + MIR SINE MIR 64 121 -87 440 210 26 72 chr6 37249359 37249436 -145165806 - LTR33 LTR ERVL -4 517 438 2324 97 0 0 chr6 37249436 37249746 -145165496 + AluSg SINE Alu 1 310 0 440 210 26 72 chr6 37249746 37249863 -145165379 - LTR33 LTR ERVL -83 438 332 664 215 47 0 chr6 37249892 37250064 -145165178 - LTR33 LTR ERVL -308 213 34 191 302 0 0 chr6 37252023 37252066 -145163176 - MIR SINE MIR -112 150 108 2320 67 40 0 chr6 37254189 37254488 -145160754 - AluY SINE Alu 0 311 1 181 0 33 33 chr6 37258104 37258134 -145157108 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 249 139 0 0 chr6 37259500 37259543 -145155699 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 207 270 63 0 chr6 37259543 37259606 -145155636 - L2 LINE L2 -1 3271 3205 264 77 0 0 chr6 37259653 37259692 -145155550 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 184 290 65 11 chr6 37259918 37260011 -145155231 - L2 LINE L2 -275 3038 2941 192 279 0 0 chr6 37260177 37260220 -145155022 + L2 LINE L2 2600 2642 -672 242 224 35 0 chr6 37260317 37260375 -145154867 - MLT1J2 LTR MaLR -1 449 390 227 118 0 0 chr6 37260406 37260440 -145154802 - MLT1J1 LTR MaLR -127 319 286 303 262 47 28 chr6 37260530 37260637 -145154605 - MLT1J1 LTR MaLR -314 132 24 2188 116 3 0 chr6 37261504 37261807 -145153435 + AluSx SINE Alu 4 307 -5 220 204 296 10 chr6 37262022 37262120 -145153122 - L2 LINE L2 -165 3148 3023 966 148 79 30 chr6 37263084 37263287 -145151955 + MIR SINE MIR 13 225 -37 2042 131 3 19 chr6 37263287 37263601 -145151641 + AluJo SINE Alu 1 309 -3 263 304 14 0 chr6 37263651 37263720 -145151522 - MIR SINE MIR -105 157 88 229 222 203 34 chr6 37263723 37263930 -145151312 + L2 LINE L2 2923 3164 -149 852 162 6 52 chr6 37264045 37264156 -145151086 + MER45A DNA AcHobo 1 103 -1478 1487 182 43 7 chr6 37264156 37264436 -145150806 - AluJo SINE Alu -22 290 1 852 162 6 52 chr6 37264436 37264497 -145150745 + MER45A DNA AcHobo 103 165 -13 324 70 0 0 chr6 37264527 37264570 -145150672 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 198 306 69 0 chr6 37264934 37265006 -145150236 - L2 LINE L2 -27 3245 3169 4659 132 37 33 chr6 37265706 37266652 -145148590 + L1MB3 LINE L1 5176 6117 -66 1860 93 43 25 chr6 37266652 37266954 -145148288 + AluSq SINE Alu 1 307 0 915 106 16 0 chr6 37266961 37267084 -145148158 + FLAM_C SINE Alu 1 125 -8 4659 132 37 33 chr6 37267084 37267132 -145148110 + L1MB3 LINE L1 6122 6181 -2 518 223 108 19 chr6 37268077 37268134 -145147108 + MER5B DNA MER1_type 6 57 -121 791 108 46 31 chr6 37268134 37268264 -145146978 + FLAM_C SINE Alu 1 132 -1 518 223 108 19 chr6 37268264 37268363 -145146879 + MER5B DNA MER1_type 57 176 -2 1582 284 126 15 chr6 37268620 37269614 -145145628 - L2 LINE L2 0 3313 2217 267 336 8 49 chr6 37269942 37270064 -145145178 + L2 LINE L2 3156 3272 0 416 318 67 22 chr6 37270956 37271135 -145144107 - MIR SINE MIR -55 207 21 2433 70 0 0 chr6 37274117 37274417 -145140825 + AluY SINE Alu 1 300 -11 257 311 107 8 chr6 37275310 37275432 -145139810 - MIR SINE MIR -2 260 127 1350 177 113 11 chr6 37275438 37275800 -145139442 + L1MC4 LINE L1 7545 7943 -99 315 308 13 0 chr6 37275828 37275906 -145139336 - MIR SINE MIR -149 113 35 1644 91 5 5 chr6 37276017 37276237 -145139005 + AluSg SINE Alu 34 253 -57 2170 117 0 3 chr6 37277139 37277438 -145137804 + AluSx SINE Alu 1 298 -14 402 169 24 0 chr6 37278626 37278709 -145136533 + MER5A DNA MER1_type 12 96 -93 1223 139 22 45 chr6 37280614 37280837 -145134405 + MER20 DNA MER1_type 2 219 0 429 280 23 15 chr6 37281048 37281180 -145134062 - MIR SINE MIR -108 154 22 441 244 43 0 chr6 37281196 37281311 -145133931 + MIR SINE MIR 33 152 -110 316 234 39 0 chr6 37282628 37282705 -145132537 - Charlie4 DNA MER1_type -64 1897 1818 188 275 325 6 chr6 37287887 37288047 -145127195 + L2 LINE L2 3012 3222 -50 1025 248 40 4 chr6 37288782 37289032 -145126210 - MIR SINE MIR 0 262 4 454 302 101 0 chr6 37289654 37289793 -145125449 - MER91B DNA MER1_type -37 153 1 207 222 20 78 chr6 37292757 37292910 -145122332 + (CA)n Simple_repeat Simple_repeat 2 145 0 355 225 90 27 chr6 37295593 37295704 -145119538 + MIR SINE MIR 36 153 -109 261 133 0 0 chr6 37297084 37297129 -145118113 - MER91B DNA MER1_type -151 45 1 2122 112 0 3 chr6 37297265 37297560 -145117682 + AluSx SINE Alu 1 294 -18 885 282 107 25 chr6 37297835 37298229 -145117013 - ERVL LTR ERVL -3887 1877 1452 436 151 43 11 chr6 37298231 37298324 -145116918 + MLT1F1 LTR MaLR 472 567 0 2464 63 3 0 chr6 37298328 37298631 -145116611 + AluY SINE Alu 1 304 -7 226 261 23 0 chr6 37298639 37298727 -145116515 - L1MC4a LINE L1 -1807 6001 5912 193 250 0 0 chr6 37299800 37299844 -145115398 + L2 LINE L2 3003 3046 -226 305 248 110 55 chr6 37300143 37300252 -145114990 - L2 LINE L2 -5 3308 3194 189 290 97 0 chr6 37300258 37300320 -145114922 + L2 LINE L2 3203 3270 -2 193 325 34 26 chr6 37302764 37302881 -145112361 + L2 LINE L2 2947 3064 -208 423 310 93 31 chr6 37302994 37303220 -145112022 + MIR SINE MIR 4 243 -19 2203 112 0 13 chr6 37304004 37304307 -145110935 - AluSx SINE Alu -13 299 1 1353 261 74 5 chr6 37304350 37304771 -145110471 + Charlie4a DNA MER1_type 17 466 -42 498 287 48 0 chr6 37305430 37305619 -145109623 + MIR3 SINE MIR 15 212 -50 306 203 45 135 chr6 37306611 37306744 -145108498 + MIR3 SINE MIR 39 159 -49 * 656 188 8 0 chr6 37306741 37306858 -145108384 - MER5A DNA MER1_type -11 178 61 746 143 76 0 chr6 37306891 37307010 -145108232 - FLAM_C SINE Alu -5 128 1 341 164 134 0 chr6 37307010 37307077 -145108165 - MER5A DNA MER1_type -113 76 1 197 254 70 0 chr6 37307568 37307639 -145107603 - L2 LINE L2 -223 3049 2974 214 311 0 29 chr6 37309370 37309473 -145105769 + G-rich Low_complexity Low_complexity 2 101 0 836 258 24 0 chr6 37309593 37309802 -145105440 + MIR SINE MIR 28 241 -21 1117 141 0 0 chr6 37309839 37310002 -145105240 - AluSg/x SINE Alu -19 293 131 195 341 23 11 chr6 37310584 37310672 -145104570 + L2 LINE L2 3153 3241 -31 429 265 24 77 chr6 37311813 37311895 -145103347 + L2 LINE L2 3152 3222 -91 537 185 311 0 chr6 37311895 37312030 -145103212 - MER45A DNA AcHobo -1 177 1 429 265 24 77 chr6 37312030 37312117 -145103125 + L2 LINE L2 3222 3312 -1 276 290 187 36 chr6 37312747 37313137 -145102105 + L1MC4 LINE L1 7594 8042 0 674 289 65 9 chr6 37313154 37313386 -145101856 + MIR SINE MIR 18 262 0 464 276 21 57 chr6 37313870 37314062 -145101180 + MIR SINE MIR 8 192 -70 213 135 27 0 chr6 37314430 37314467 -145100775 + (CCCCAG)n Simple_repeat Simple_repeat 5 42 0 338 215 13 0 chr6 37314983 37315062 -145100180 + MER46C DNA MER2_type 258 337 -1 253 343 110 7 chr6 37315062 37315208 -145100034 - MIR SINE MIR -61 201 41 346 306 8 40 chr6 37315220 37315344 -145099898 - L3 LINE CR1 -7 1570 1451 383 155 28 0 chr6 37316195 37316266 -145098976 + L2 LINE L2 3229 3301 -12 500 196 53 38 chr6 37317415 37317427 -145097815 + MIR SINE MIR 52 62 -200 2018 124 19 3 chr6 37317427 37317734 -145097508 - AluSq SINE Alu -1 312 1 500 196 53 38 chr6 37317734 37317854 -145097388 + MIR SINE MIR 62 186 -76 756 275 69 0 chr6 37317875 37318093 -145097149 - MIR SINE MIR -17 245 13 2098 98 0 7 chr6 37318476 37318800 -145096442 - AluSx SINE Alu 0 322 1 933 223 28 9 chr6 37321008 37321219 -145094023 - MIR SINE MIR -43 219 5 276 130 0 0 chr6 37321585 37321631 -145093611 + (CA)n Simple_repeat Simple_repeat 1 46 0 269 275 23 76 chr6 37322872 37323003 -145092239 + MIR3 SINE MIR 37 160 -48 443 283 241 0 chr6 37323060 37323205 -145092037 + MER91A DNA MER1_type 9 188 -8 870 142 0 15 chr6 37323297 37323431 -145091811 - AluJo SINE Alu -176 136 5 922 197 121 76 chr6 37323992 37324372 -145090870 + LTR16A1 LTR ERVL 61 457 0 262 270 0 0 chr6 37324591 37324654 -145090588 + L3 LINE CR1 1396 1458 -119 2275 116 0 0 chr6 37325149 37325460 -145089782 - AluSx SINE Alu 0 312 2 676 295 78 0 chr6 37325727 37325985 -145089257 + MER20B DNA MER1_type 155 432 -351 968 125 0 0 chr6 37326032 37326168 -145089074 + FLAM_C SINE Alu 1 136 -7 40 0 0 20 chr6 37326205 37326239 -145089003 + AT_rich Low_complexity Low_complexity 1 35 -15 1638 188 3 3 chr6 37326239 37326531 -145088711 + AluJo SINE Alu 1 292 -20 40 0 0 20 chr6 37326531 37326547 -145088695 + AT_rich Low_complexity Low_complexity 35 50 0 2269 89 0 16 chr6 37326683 37326987 -145088255 + AluSg SINE Alu 1 299 -11 208 298 61 61 chr6 37326997 37327111 -145088131 + L2 LINE L2 3145 3258 -55 232 364 34 0 chr6 37328017 37328135 -145087107 + L1MEd LINE L1 939 1060 -5470 2559 43 0 3 chr6 37328146 37328451 -145086791 - AluY SINE Alu -6 305 2 638 317 102 36 chr6 37328459 37328822 -145086420 + L1MEd LINE L1 1021 1407 -5133 271 301 97 0 chr6 37329569 37329662 -145085580 - MER5B DNA MER1_type -38 140 39 2211 113 3 0 chr6 37329922 37330231 -145085011 + AluSp SINE Alu 1 310 -3 2174 94 0 20 chr6 37330244 37330542 -145084700 + AluSg1 SINE Alu 1 292 -17 1633 133 72 14 chr6 37330555 37330834 -145084408 + AluJb SINE Alu 3 297 -15 455 246 107 16 chr6 37330971 37331081 -145084161 + HAL1 LINE L1 2187 2286 -221 2147 139 0 0 chr6 37331081 37331390 -145083852 + AluJb SINE Alu 1 309 -3 455 246 107 16 chr6 37331390 37331466 -145083776 + HAL1 LINE L1 2286 2390 -117 303 266 77 121 chr6 37331467 37331646 -145083596 + L1MC4a LINE L1 5522 5707 -2101 2395 179 22 22 chr6 37331646 37332110 -145083132 + L1MB3 LINE L1 5718 6181 -2 303 266 77 121 chr6 37332110 37332122 -145083120 + L1MC4a LINE L1 5707 5718 -2090 1617 189 20 17 chr6 37332122 37332419 -145082823 + AluJb SINE Alu 2 299 -13 303 266 77 121 chr6 37332419 37332510 -145082732 + L1MC4a LINE L1 5718 5811 -1997 1948 153 3 0 chr6 37332510 37332811 -145082431 - AluJb SINE Alu -10 302 1 303 266 77 121 chr6 37332811 37333097 -145082145 + L1MC4a LINE L1 5811 6067 -1741 2320 108 0 0 chr6 37333311 37333616 -145081626 + AluSg SINE Alu 1 305 -5 613 219 21 3 chr6 37333626 37333787 -145081455 + L1ME3 LINE L1 5367 5513 -651 373 347 17 0 chr6 37333895 37334071 -145081171 + L1ME3 LINE L1 5691 5869 -293 2234 98 0 9 chr6 37334081 37334396 -145080846 - AluSx SINE Alu 0 312 1 2236 113 0 0 chr6 37334617 37334918 -145080324 + AluSx SINE Alu 1 301 -11 966 98 0 0 chr6 37335158 37335291 -145079951 + AluSq/x SINE Alu 1 133 -179 2022 146 3 0 chr6 37335368 37335670 -145079572 - AluSg SINE Alu -7 303 1 180 77 0 0 chr6 37337155 37337181 -145078061 + (TC)n Simple_repeat Simple_repeat 2 27 0 1104 288 94 6 chr6 37337481 37337950 -145077292 - L2 LINE L2 0 3313 2804 246 320 26 0 chr6 37338575 37338653 -145076589 - MIR3 SINE MIR -20 188 109 247 308 8 17 chr6 37339470 37339587 -145075655 + GA-rich Low_complexity Low_complexity 1 116 0 611 196 7 0 chr6 37339761 37339909 -145075333 + (TCCA)n Simple_repeat Simple_repeat 2 150 0 275 316 54 36 chr6 37339956 37340124 -145075118 - MIR SINE MIR -16 246 76 2313 101 0 0 chr6 37340176 37340482 -145074760 - AluSg SINE Alu -4 306 1 379 169 24 24 chr6 37340892 37340975 -145074267 + MER21B LTR ERV1 3 85 -778 595 197 109 49 chr6 37341094 37341277 -145073965 + MER21B LTR ERV1 95 288 -575 2116 104 0 0 chr6 37341281 37341590 -145073652 + AluSg SINE Alu 5 313 0 1003 149 0 6 chr6 37341616 37341631 -145073611 + AluSg/x SINE Alu 120 134 -178 1978 89 3 70 chr6 37341631 37341946 -145073296 + AluSx SINE Alu 1 294 -18 1003 149 0 6 chr6 37341946 37342091 -145073151 + AluSg/x SINE Alu 134 279 -33 189 74 0 0 chr6 37342092 37342119 -145073123 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1226 203 221 6 chr6 37342121 37342470 -145072772 + MER21B LTR ERV1 317 740 -123 293 286 314 0 chr6 37342496 37342636 -145072606 - MIR SINE MIR -56 206 23 2483 248 85 46 chr6 37342678 37343265 -145071977 + L2 LINE L2 2093 2656 -657 1993 109 0 48 chr6 37343265 37343576 -145071666 - AluSx SINE Alu -16 296 1 2483 248 85 46 chr6 37343576 37344172 -145071070 + L2 LINE L2 2656 3313 0 196 264 44 11 chr6 37344197 37344288 -145070954 - L2 LINE L2 -68 3245 3152 23 86 0 0 chr6 37345828 37345886 -145069356 + AT_rich Low_complexity Low_complexity 1 58 0 22 56 0 0 chr6 37346002 37346038 -145069204 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr6 37346064 37346097 -145069145 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr6 37346378 37346399 -145068843 + GC_rich Low_complexity Low_complexity 1 21 0 377 238 42 95 chr6 37347684 37347873 -145067369 - MIR3 SINE MIR 0 208 30 4218 188 48 44 chr6 37347884 37348834 -145066408 + LTR13 LTR ERVK 1 954 0 345 348 50 25 chr6 37349720 37349881 -145065361 + L1MC4 LINE L1 7507 7671 -371 2280 86 7 0 chr6 37349885 37350177 -145065065 - AluSc SINE Alu -15 294 1 2300 86 3 0 chr6 37350367 37350668 -145064574 + AluSq SINE Alu 1 302 -11 592 209 78 0 chr6 37350681 37350796 -145064446 + AluJo SINE Alu 123 246 -66 322 312 158 60 chr6 37350797 37351012 -145064230 + L1MC4 LINE L1 7708 7943 -99 237 33 0 0 chr6 37351262 37351292 -145063950 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 581 250 123 37 chr6 37352481 37352805 -145062437 + L1ME4a LINE L1 5599 5950 -171 24 67 0 0 chr6 37352896 37352941 -145062301 + AT_rich Low_complexity Low_complexity 1 45 0 2249 95 7 7 chr6 37353039 37353343 -145061899 + AluSp SINE Alu 1 304 -9 366 221 0 58 chr6 37353478 37353564 -145061678 + L2 LINE L2 3186 3266 -6 548 275 60 36 chr6 37353676 37353843 -145061399 - MER5B DNA MER1_type -4 174 4 1798 175 14 0 chr6 37353912 37354209 -145061033 + AluJb SINE Alu 1 301 -11 2248 97 3 0 chr6 37354619 37354917 -145060325 + AluSp SINE Alu 2 300 -13 475 246 196 0 chr6 37355600 37355738 -145059504 - MER5A DNA MER1_type 0 189 25 238 330 11 23 chr6 37355762 37355850 -145059392 + L2 LINE L2 3143 3229 -43 1764 133 55 14 chr6 37356532 37356825 -145058417 + AluJb SINE Alu 1 305 -7 39 0 0 0 chr6 37358756 37358795 -145056447 + GC_rich Low_complexity Low_complexity 1 39 0 209 224 28 37 chr6 37358875 37358982 -145056260 + (CCCG)n Simple_repeat Simple_repeat 3 108 0 243 0 0 0 chr6 37360011 37360038 -145055204 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 618 212 57 61 chr6 37360119 37360364 -145054878 + MER112 DNA MER1_type 17 260 0 192 383 35 26 chr6 37360376 37360491 -145054751 - MIR SINE MIR -73 135 20 259 238 48 0 chr6 37360627 37360690 -145054552 - L2 LINE L2 0 3272 3207 315 193 172 110 chr6 37361333 37361366 -145053876 + MIR SINE MIR 9 39 -223 2335 86 0 3 chr6 37361366 37361668 -145053574 - AluSc SINE Alu -8 301 1 315 193 172 110 chr6 37361668 37361779 -145053463 + MIR SINE MIR 39 162 -100 302 316 97 0 chr6 37361983 37362097 -145053145 - L1MC4 LINE L1 -4 8038 7914 2161 125 0 10 chr6 37362115 37362428 -145052814 + AluSx SINE Alu 1 310 -2 1747 149 7 30 chr6 37362440 37362741 -145052501 + AluJb SINE Alu 3 296 -16 254 296 24 40 chr6 37362952 37363077 -145052165 - L1ME LINE L1 -359 5811 5689 476 253 104 42 chr6 37363103 37363180 -145052062 - MER112 DNA MER1_type 0 260 189 2450 63 0 0 chr6 37363180 37363481 -145051761 - AluY SINE Alu -10 301 1 476 253 104 42 chr6 37363481 37363644 -145051598 - MER112 DNA MER1_type -71 189 5 436 325 6 6 chr6 37363647 37363807 -145051435 - L1ME LINE L1 -508 5656 5497 180 0 0 0 chr6 37363931 37363951 -145051291 + (CACTT)n Simple_repeat Simple_repeat 1 20 0 1012 123 0 0 chr6 37363993 37364131 -145051111 + AluSq/x SINE Alu 1 138 -174 2234 76 0 7 chr6 37364133 37364454 -145050788 + AluY SINE Alu 7 311 0 2419 83 0 0 chr6 37364457 37364759 -145050483 + AluSq SINE Alu 1 302 -11 2116 103 7 3 chr6 37365243 37365535 -145049707 - AluSq SINE Alu -20 293 1 207 272 109 61 chr6 37365842 37365989 -145049253 + MIR SINE MIR 54 207 -1 270 0 0 0 chr6 37366356 37366386 -145048856 + (CA)n Simple_repeat Simple_repeat 2 31 0 2071 104 33 3 chr6 37366913 37367212 -145048030 + AluSg1 SINE Alu 1 308 -1 396 161 0 0 chr6 37367215 37367296 -145047946 + GA-rich Low_complexity Low_complexity 4 84 0 216 374 149 0 chr6 37367304 37367411 -145047831 + MIR SINE MIR 26 148 -114 980 249 36 22 chr6 37367417 37367489 -145047753 - LTR33 LTR ERVL 0 521 452 2098 119 0 3 chr6 37367489 37367784 -145047458 + AluSx SINE Alu 6 299 -13 980 249 36 22 chr6 37367784 37368161 -145047081 - LTR33 LTR ERVL -69 452 1 445 314 178 47 chr6 37369531 37370245 -145044997 - L2 LINE L2 0 3313 2481 1203 214 34 7 chr6 37370664 37370959 -145044283 - L1MC2 LINE L1 -9 6335 6033 272 247 14 14 chr6 37371087 37371160 -145044082 - MIR SINE MIR -131 131 59 264 278 48 55 chr6 37371167 37371428 -145043814 - LTR16C LTR ERVL -4 487 158 208 271 17 0 chr6 37371551 37371610 -145043632 - L2 LINE L2 0 3272 3213 322 205 26 26 chr6 37372256 37372334 -145042908 - MIR SINE MIR -109 153 76 184 360 40 0 chr6 37372336 37372411 -145042831 - MIR SINE MIR -112 150 73 468 290 43 7 chr6 37372413 37372551 -145042691 - MIR SINE MIR -115 147 5 32 0 0 0 chr6 37373133 37373165 -145042077 + AT_rich Low_complexity Low_complexity 1 32 0 537 223 123 0 chr6 37373293 37373423 -145041819 - MIR SINE MIR 0 262 117 218 270 32 0 chr6 37373443 37373506 -145041736 + L2 LINE L2 2979 3043 -229 277 228 79 94 chr6 37373585 37373621 -145041621 + MIR SINE MIR 46 81 -181 2281 97 0 0 chr6 37373621 37373920 -145041322 - AluSg SINE Alu -11 299 1 277 228 79 94 chr6 37373920 37374010 -145041232 + MIR SINE MIR 81 170 -92 2006 144 27 47 chr6 37374027 37374052 -145041190 + MSTB LTR MaLR 31 55 -371 2368 83 0 0 chr6 37374052 37374353 -145040889 + AluSg SINE Alu 3 303 -7 2006 144 27 47 chr6 37374353 37374729 -145040513 + MSTB LTR MaLR 55 424 -2 9080 160 42 28 chr6 37374735 37375274 -145039968 + MSTB-int LTR MaLR 1 531 -1120 2043 108 20 3 chr6 37375274 37375569 -145039673 - AluSq SINE Alu -13 300 1 9080 160 42 28 chr6 37375569 37376330 -145038912 + MSTB-int LTR MaLR 531 1332 -319 1985 116 3 0 chr6 37376330 37376649 -145038593 + AluSx SINE Alu 1 320 0 9080 160 42 28 chr6 37376649 37376971 -145038271 + MSTB-int LTR MaLR 1332 1648 -3 2676 126 20 48 chr6 37376974 37377173 -145038069 + MSTB LTR MaLR 1 204 -222 2227 102 0 7 chr6 37377173 37377468 -145037774 + AluSx SINE Alu 1 293 -19 2676 126 20 48 chr6 37377468 37377706 -145037536 + MSTB LTR MaLR 204 426 0 213 351 0 0 chr6 37377706 37377783 -145037459 + MIR SINE MIR 168 244 -18 569 247 134 4 chr6 37377913 37378144 -145037098 - LTR16C LTR ERVL 0 491 231 1742 150 14 7 chr6 37378169 37378456 -145036786 - AluJo SINE Alu -23 289 1 2080 91 4 7 chr6 37378479 37378755 -145036487 + AluSx SINE Alu 1 275 -37 2415 75 3 0 chr6 37378756 37379061 -145036181 + AluSp SINE Alu 1 306 -7 656 187 114 0 chr6 37379061 37379184 -145036058 - FRAM SINE Alu -39 137 1 492 220 43 35 chr6 37379185 37379326 -145035916 - LTR16C LTR ERVL -258 233 92 2243 97 0 0 chr6 37379518 37379817 -145035425 + AluSc SINE Alu 2 300 -9 2314 80 0 19 chr6 37379825 37380137 -145035105 + AluY SINE Alu 1 306 -5 286 185 8 12 chr6 37380740 37380877 -145034365 - MER2 DNA MER2_type 0 345 165 2265 103 6 3 chr6 37380880 37381191 -145034051 + AluSx SINE Alu 1 312 0 2165 113 3 0 chr6 37381336 37381647 -145033595 + AluSp SINE Alu 1 312 -1 1178 118 0 0 chr6 37381647 37381816 -145033426 + AluSq SINE Alu 134 302 -11 680 230 9 59 chr6 37382301 37382332 -145032910 - L2 LINE L2 -1 3312 3281 600 192 80 16 chr6 37382332 37382457 -145032785 - FLAM_A SINE Alu 0 133 1 680 230 9 59 chr6 37382457 37382647 -145032595 - L2 LINE L2 -32 3281 3102 863 94 6 126 chr6 37382649 37382808 -145032434 + AluSq/x SINE Alu 1 140 -172 660 126 0 39 chr6 37382826 37382929 -145032313 - AluJb SINE Alu -209 103 5 723 261 70 55 chr6 37382942 37383133 -145032109 - L2 LINE L2 -244 3069 2867 2171 109 3 26 chr6 37383133 37383446 -145031796 + AluSx SINE Alu 1 306 -6 723 261 70 55 chr6 37383446 37383595 -145031647 - L2 LINE L2 -446 2867 2722 414 293 49 76 chr6 37383625 37383713 -145031529 - MIR SINE MIR -21 241 152 2083 101 3 21 chr6 37383713 37384036 -145031206 + AluSp SINE Alu 1 318 0 414 293 49 76 chr6 37384036 37384050 -145031192 - MIR SINE MIR -110 152 139 2271 85 6 16 chr6 37384050 37384366 -145030876 + AluSp SINE Alu 1 313 0 414 293 49 76 chr6 37384366 37384486 -145030756 - MIR SINE MIR -123 139 23 1358 139 33 19 chr6 37384543 37384758 -145030484 - MER20 DNA MER1_type 0 219 2 220 388 0 10 chr6 37384909 37385012 -145030230 + L2 LINE L2 2753 2854 -460 2018 84 3 51 chr6 37385457 37385603 -145029639 + AluSx SINE Alu 1 152 -205 1781 33 9 0 chr6 37385603 37385813 -145029429 + AluY SINE Alu 92 303 -8 1938 119 0 44 chr6 37385813 37386132 -145029110 + AluSc SINE Alu 1 305 -4 2018 84 3 51 chr6 37386132 37386355 -145028887 + AluSx SINE Alu 150 357 0 307 274 76 79 chr6 37386462 37386739 -145028503 + L2 LINE L2 2939 3214 -58 738 271 213 6 chr6 37387219 37387350 -145027892 + L2 LINE L2 2615 2718 -595 758 121 179 0 chr6 37387350 37387490 -145027752 + FRAM SINE Alu 1 165 -1 738 271 213 6 chr6 37387490 37387912 -145027330 + L2 LINE L2 2718 3296 -17 2136 102 3 7 chr6 37387923 37388218 -145027024 - AluSq SINE Alu -19 294 1 299 267 71 52 chr6 37388240 37388408 -145026834 - MIR SINE MIR -58 150 1 222 113 14 113 chr6 37388730 37388801 -145026441 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 347 219 119 46 chr6 37388892 37389043 -145026199 - MER91A DNA MER1_type 0 196 35 201 281 0 0 chr6 37389534 37389598 -145025644 - MIR SINE MIR -62 146 83 363 80 0 0 chr6 37391606 37391656 -145023586 + L1PA5 LINE L1 6105 6154 0 2029 145 0 0 chr6 37392094 37392391 -145022851 - AluJb SINE Alu -15 297 1 199 294 219 8 chr6 37392510 37392629 -145022613 - MIR3 SINE MIR -56 152 9 546 301 0 12 chr6 37392889 37393062 -145022180 - MIR3 SINE MIR -7 201 31 279 54 0 0 chr6 37393091 37393128 -145022114 + (TG)n Simple_repeat Simple_repeat 1 37 0 546 233 218 5 chr6 37393808 37394001 -145021241 + MIR SINE MIR 18 251 -11 859 261 23 9 chr6 37394982 37395200 -145020042 - MIR SINE MIR -14 248 28 2396 74 3 0 chr6 37396927 37397237 -145018005 - AluY SINE Alu 0 311 1 2345 91 0 0 chr6 37397237 37397544 -145017698 - AluSc SINE Alu -2 307 1 2065 99 3 39 chr6 37397547 37397716 -145017526 - AluSq SINE Alu -12 301 128 2230 103 6 0 chr6 37397716 37398027 -145017215 - AluSp SINE Alu 0 313 1 2056 61 0 11 chr6 37398029 37398291 -145016951 - AluY SINE Alu -12 299 41 2065 99 3 39 chr6 37398291 37398430 -145016812 - AluSq SINE Alu -186 127 1 1396 151 50 76 chr6 37398430 37398747 -145016495 - AluJo SINE Alu -3 309 1 1818 153 0 36 chr6 37398750 37399058 -145016184 - AluJo SINE Alu -15 297 1 2164 99 0 7 chr6 37399215 37399508 -145015734 - AluSc SINE Alu -18 291 1 267 281 141 8 chr6 37399520 37399648 -145015594 + MIR SINE MIR 104 248 -14 1871 84 0 0 chr6 37400783 37401020 -145014222 - AluSg SINE Alu -12 298 62 391 327 106 18 chr6 37401690 37401907 -145013335 + MIR SINE MIR 17 252 -10 634 109 33 0 chr6 37402285 37402377 -145012865 + AluSg1 SINE Alu 1 95 -214 211 204 0 20 chr6 37403102 37403151 -145012091 + MIR SINE MIR 46 93 -115 394 269 101 13 chr6 37403235 37403384 -145011858 + MIR SINE MIR 29 190 -72 2425 70 0 10 chr6 37403451 37403798 -145011444 - AluY SINE Alu 0 344 1 2306 77 3 10 chr6 37403799 37404098 -145011144 - AluSp SINE Alu -14 299 3 301 263 204 72 chr6 37405253 37405405 -145009837 + MIR SINE MIR 1 172 -90 231 295 55 0 chr6 37408409 37408529 -145006713 - MIR SINE MIR -9 253 123 2273 80 0 51 chr6 37409638 37409950 -145005292 - AluSg SINE Alu -14 296 1 351 179 0 0 chr6 37410004 37410071 -145005171 + (TG)n Simple_repeat Simple_repeat 1 67 0 2267 108 10 3 chr6 37410270 37410576 -145004666 + AluSp SINE Alu 1 308 -5 2209 86 34 0 chr6 37411496 37411787 -145003455 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 37413374 37413395 -145001847 + AT_rich Low_complexity Low_complexity 1 21 0 972 148 36 61 chr6 37413402 37413598 -145001644 + AluJo SINE Alu 84 274 -38 584 119 0 10 chr6 37413605 37413706 -145001536 + (GGGA)n Simple_repeat Simple_repeat 1 100 0 645 164 112 154 chr6 37413711 37413997 -145001245 + LTR54 LTR ERV1 45 318 -192 884 143 0 0 chr6 37414001 37414127 -145001115 + FLAM_C SINE Alu 9 134 -9 2454 83 3 19 chr6 37414127 37414441 -145000801 + AluSp SINE Alu 1 309 -4 880 153 11 69 chr6 37414463 37414519 -145000723 + LTR54 LTR ERV1 333 391 -119 2247 100 0 36 chr6 37414519 37414820 -145000422 + AluSx SINE Alu 3 292 -20 880 153 11 69 chr6 37414820 37414952 -145000290 + LTR54 LTR ERV1 391 510 0 243 91 0 0 chr6 37415054 37415087 -145000155 - L2 LINE L2 -1 3271 3239 2160 92 14 10 chr6 37415212 37415504 -144999738 - AluSp SINE Alu -19 294 2 775 106 71 0 chr6 37415518 37415631 -144999611 - AluJb SINE Alu -19 293 173 2307 102 6 19 chr6 37415658 37415973 -144999269 + AluSq SINE Alu 1 311 -2 226 254 206 0 chr6 37416007 37416070 -144999172 + MIR SINE MIR 13 88 -174 2134 124 0 3 chr6 37416103 37416401 -144998841 - AluSg SINE Alu -13 297 1 781 192 0 0 chr6 37416407 37416532 -144998710 - FLAM_C SINE Alu -17 126 2 2502 96 0 0 chr6 37416559 37416871 -144998371 + AluSx SINE Alu 1 312 0 688 158 108 0 chr6 37416875 37416995 -144998247 + AluJ SINE Alu 1 133 -169 1943 154 0 19 chr6 37417017 37417150 -144998092 + AluJo SINE Alu 3 137 -175 2162 100 0 43 chr6 37417150 37417487 -144997755 + AluSx SINE Alu 1 324 0 1943 154 0 19 chr6 37417487 37417662 -144997580 + AluJo SINE Alu 137 307 -5 225 308 137 17 chr6 37417673 37417790 -144997452 - MIR SINE MIR -14 248 118 1016 156 17 22 chr6 37417791 37417970 -144997272 + AluJ SINE Alu 134 311 -1 971 227 50 78 chr6 37418000 37418154 -144997088 - MLT1H LTR MaLR -198 351 194 2445 76 0 7 chr6 37418154 37418458 -144996784 - AluSp SINE Alu -11 302 1 971 227 50 78 chr6 37418458 37418584 -144996658 - MLT1H LTR MaLR -355 194 81 2385 60 40 3 chr6 37418584 37418883 -144996359 + AluY SINE Alu 2 311 0 971 227 50 78 chr6 37418883 37418962 -144996280 - MLT1H LTR MaLR -468 81 1 1792 151 10 36 chr6 37418983 37419288 -144995954 - AluJo SINE Alu -15 297 1 2263 89 31 0 chr6 37419431 37419722 -144995520 - AluSx SINE Alu -12 300 1 2066 142 7 0 chr6 37420164 37420452 -144994790 - AluSx SINE Alu -21 291 2 1416 201 37 8 chr6 37420565 37420833 -144994409 - AluJo SINE Alu -24 288 13 2212 106 17 10 chr6 37420861 37421163 -144994079 + AluSx SINE Alu 1 304 -8 2161 86 11 4 chr6 37421256 37421561 -144993681 - AluY SINE Alu 0 308 2 1824 117 36 22 chr6 37421562 37421836 -144993406 - AluSp SINE Alu -35 278 1 826 190 0 25 chr6 37421843 37422001 -144993241 - AluJ SINE Alu -12 290 137 334 61 20 0 chr6 37422001 37422050 -144993192 - AluJ SINE Alu -166 136 87 * 1374 229 34 96 chr6 37422039 37422568 -144992674 + LTR8 LTR ERV1 196 691 0 2406 91 7 0 chr6 37422646 37422955 -144992287 - AluSp SINE Alu -2 311 1 271 224 160 32 chr6 37422958 37423083 -144992159 - MLT1H LTR MaLR -146 403 263 203 51 26 51 chr6 37423227 37423266 -144991976 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 1570 149 17 85 chr6 37423268 37423391 -144991851 + AluSx SINE Alu 1 131 -181 425 88 0 15 chr6 37423391 37423459 -144991783 + (TA)n Simple_repeat Simple_repeat 1 67 0 1570 149 17 85 chr6 37423459 37423630 -144991612 + AluSx SINE Alu 131 275 -37 2318 101 7 3 chr6 37423630 37423936 -144991306 - AluSq SINE Alu -5 308 1 2078 83 4 0 chr6 37424094 37424348 -144990894 + AluSp SINE Alu 21 275 -38 1893 110 0 16 chr6 37424428 37424682 -144990560 + AluSq SINE Alu 1 250 -63 207 0 0 0 chr6 37424686 37424709 -144990533 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2299 113 0 3 chr6 37424727 37425028 -144990214 - AluSx SINE Alu -12 300 1 1678 172 17 33 chr6 37425104 37425406 -144989836 + AluJo SINE Alu 1 297 -15 2252 108 0 0 chr6 37425630 37425925 -144989317 - AluSg SINE Alu -15 295 1 2318 92 3 0 chr6 37426000 37426292 -144988950 - AluSc SINE Alu -14 295 3 1838 159 0 3 chr6 37426701 37426984 -144988258 + AluJb SINE Alu 1 282 -30 1768 172 3 7 chr6 37426986 37427276 -144987966 - AluJb SINE Alu -13 299 11 2300 96 0 0 chr6 37427311 37427604 -144987638 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr6 37427720 37427745 -144987497 + (T)n Simple_repeat Simple_repeat 1 25 0 1671 127 104 4 chr6 37427939 37428207 -144987035 - AluJb SINE Alu -17 295 1 1500 179 11 11 chr6 37428207 37428480 -144986762 + AluJo SINE Alu 27 299 -13 2191 109 0 40 chr6 37428774 37429096 -144986146 - AluSg SINE Alu -1 309 1 2143 106 6 58 chr6 37429096 37429424 -144985818 - AluSx SINE Alu 0 312 1 941 171 15 68 chr6 37429430 37429589 -144985653 + Tigger3(Golem) DNA MER2_type 2835 2982 -46 2291 116 0 0 chr6 37429589 37429900 -144985342 + AluSx SINE Alu 1 311 -1 941 171 15 68 chr6 37429900 37429945 -144985297 + Tigger3(Golem) DNA MER2_type 2982 3028 0 728 175 19 69 chr6 37429999 37430159 -144985083 + FAM SINE Alu 24 175 -10 1927 142 30 26 chr6 37430329 37430631 -144984611 - AluSx SINE Alu -9 303 1 1528 173 13 33 chr6 37430837 37431143 -144984099 + AluJb SINE Alu 6 305 -7 592 126 202 0 chr6 37431155 37431274 -144983968 - MER7A DNA MER2_type -204 142 2 2280 82 20 10 chr6 37431814 37432106 -144983136 - AluSx SINE Alu -15 297 3 2291 116 0 3 chr6 37432729 37433040 -144982202 + AluSg SINE Alu 1 310 0 1813 180 0 16 chr6 37433055 37433366 -144981876 + AluJo SINE Alu 1 306 -6 1677 40 56 0 chr6 37433377 37433575 -144981667 + AluY SINE Alu 86 294 -17 2322 104 0 25 chr6 37433960 37434278 -144980964 - AluSx SINE Alu -2 310 1 2153 103 24 0 chr6 37434562 37434852 -144980390 + AluSx SINE Alu 1 297 -15 1976 101 57 30 chr6 37435336 37435632 -144979610 - AluSx SINE Alu -8 304 1 302 239 0 14 chr6 37436524 37436595 -144978647 - MER94 DNA DNA 0 134 65 261 286 14 0 chr6 37436625 37436695 -144978547 - MER94 DNA DNA -59 75 5 712 214 0 0 chr6 37437150 37437296 -144977946 + Tigger3(Golem) DNA MER2_type 1 2572 -457 2504 79 0 13 chr6 37437300 37437616 -144977626 - AluSx SINE Alu 0 312 1 1939 144 3 3 chr6 37437652 37437943 -144977299 - AluSx SINE Alu -21 291 1 1736 149 9 72 chr6 37437944 37438112 -144977130 - AluJo SINE Alu -11 301 124 2184 125 0 7 chr6 37438112 37438415 -144976827 - AluSx SINE Alu -11 301 1 195 69 0 0 chr6 37438417 37438446 -144976796 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1986 127 8 0 chr6 37438455 37438723 -144976519 - AluSx SINE Alu -36 276 7 1736 149 9 72 chr6 37438723 37438862 -144976380 - AluJo SINE Alu -197 115 1 404 59 0 0 chr6 37438862 37438913 -144976329 - AluSg/x SINE Alu -175 134 84 1092 231 0 5 chr6 37438913 37439134 -144976108 - AluJo SINE Alu -92 220 1 1894 151 9 35 chr6 37439136 37439453 -144975789 - 7SLRNA srpRNA srpRNA -11 309 1 2307 104 0 3 chr6 37439460 37439758 -144975484 - AluSg SINE Alu -13 297 1 2393 115 112 2 chr6 37439758 37440176 -144975066 + Tigger3(Golem) DNA MER2_type 2563 3026 -3 336 283 175 0 chr6 37440467 37440587 -144974655 - MIR SINE MIR -1 261 121 2235 107 0 3 chr6 37440590 37440880 -144974362 + AluSc SINE Alu 1 289 -20 2537 72 0 0 chr6 37440890 37441196 -144974046 - AluY SINE Alu 0 311 6 419 222 66 111 chr6 37441196 37441492 -144973750 - L1ME4a LINE L1 -1 6120 5847 769 149 0 25 chr6 37441492 37441613 -144973629 - FLAM_A SINE Alu -15 118 1 419 222 66 111 chr6 37441613 37441739 -144973503 - L1ME4a LINE L1 -274 5847 5717 2233 81 0 55 chr6 37442366 37442698 -144972544 - AluSg SINE Alu 0 310 1 427 155 17 103 chr6 37442765 37442881 -144972361 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 37443033 37443054 -144972188 + AT_rich Low_complexity Low_complexity 1 21 0 429 119 15 0 chr6 37443058 37443125 -144972117 + AluJ/FLAM SINE Alu 3 70 -242 870 201 6 6 chr6 37443125 37443294 -144971948 + AluJo/FRAM SINE Alu 138 307 -1 2384 98 0 0 chr6 37443294 37443591 -144971651 - AluSq SINE Alu -16 297 1 1620 179 17 10 chr6 37443704 37443995 -144971247 + AluJo SINE Alu 9 301 -11 697 178 7 22 chr6 37444039 37444174 -144971068 - FLAM_C SINE Alu 0 133 1 1754 137 11 32 chr6 37444414 37444698 -144970544 + AluJb SINE Alu 21 298 -14 335 245 98 44 chr6 37444851 37445105 -144970137 - L1ME4a LINE L1 -660 5506 5243 * 782 121 25 126 chr6 37445102 37445158 -144970084 - L1MB7 LINE L1 -12 6172 6112 894 130 15 0 chr6 37445158 37445289 -144969953 - FLAM_C SINE Alu 0 133 1 782 121 25 126 chr6 37445289 37445430 -144969812 - L1MB7 LINE L1 -72 6112 5995 839 96 0 17 chr6 37445430 37445545 -144969697 - AluSp/q SINE Alu -19 294 182 489 138 46 0 chr6 37445553 37445640 -144969602 - L1MB7 LINE L1 -200 5984 5894 964 157 7 0 chr6 37445640 37445780 -144969462 - FRAM SINE Alu -36 140 1 2216 107 7 7 chr6 37445950 37446259 -144968983 + AluY SINE Alu 1 309 -2 742 245 7 0 chr6 37446281 37446424 -144968818 - AluJ SINE Alu -31 281 138 6857 147 154 38 chr6 37446424 37447938 -144967304 - pTR5 LTR ERV1 -6 2432 743 2312 105 0 10 chr6 37447955 37448259 -144966983 - AluSx SINE Alu -11 301 1 24 0 0 0 chr6 37448259 37448283 -144966959 + AT_rich Low_complexity Low_complexity 1 24 0 985 131 0 0 chr6 37448309 37448439 -144966803 - AluJ SINE Alu -171 141 12 360 261 62 66 chr6 37448446 37448480 -144966762 - L1ME4a LINE L1 -1108 5038 5005 2252 80 35 0 chr6 37448480 37448769 -144966473 - AluY SINE Alu -12 299 1 360 261 62 66 chr6 37448769 37448941 -144966301 - L1ME4a LINE L1 -1141 5005 4836 2197 131 3 0 chr6 37448948 37449253 -144965989 - AluSx SINE Alu -6 306 1 344 293 78 48 chr6 37449253 37449420 -144965822 - L1ME4a LINE L1 -1732 4414 4243 2226 147 0 0 chr6 37449442 37449754 -144965488 - AluSx SINE Alu 0 312 1 1627 157 111 7 chr6 37449761 37450041 -144965201 - AluSg1 SINE Alu 0 309 1 2489 87 0 0 chr6 37450096 37450396 -144964846 - AluSc SINE Alu -9 300 1 1954 174 0 0 chr6 37450407 37450701 -144964541 - AluJb SINE Alu -18 294 1 665 209 20 70 chr6 37451341 37451542 -144963700 - MLT1J LTR MaLR -82 429 239 397 175 219 44 chr6 37451569 37451683 -144963559 - MER5A DNA MER1_type -7 182 49 240 299 13 13 chr6 37451700 37451777 -144963465 - MLT1J LTR MaLR -298 213 137 2359 100 0 0 chr6 37451966 37452257 -144962985 + AluSg SINE Alu 1 291 -19 2231 113 3 16 chr6 37452451 37452760 -144962482 + AluSg SINE Alu 6 310 0 2327 81 17 7 chr6 37452769 37453065 -144962177 + AluSp SINE Alu 1 299 -14 299 145 32 0 chr6 37453214 37453276 -144961966 + L1MB3 LINE L1 5257 5320 -863 2043 122 10 10 chr6 37453305 37453601 -144961641 - AluJo SINE Alu -16 296 1 397 119 59 153 chr6 37453602 37453720 -144961522 + L1MB3 LINE L1 5461 5567 -616 1829 163 27 85 chr6 37453734 37453975 -144961267 - MER21B LTR ERV1 -3 860 651 6735 39 0 18 chr6 37453975 37454768 -144960474 - SVA Other Other 0 1386 608 1829 163 27 85 chr6 37454768 37454936 -144960306 - MER21B LTR ERV1 -212 651 475 447 88 75 12 chr6 37454936 37455016 -144960226 - LTR23 LTR ERV1 0 437 353 2215 90 7 0 chr6 37455052 37455358 -144959884 - AluSg SINE Alu 0 308 1 1971 150 0 7 chr6 37455377 37455671 -144959571 - AluJo SINE Alu -14 298 7 2307 154 130 2 chr6 37455731 37456154 -144959088 - MER21B LTR ERV1 -386 477 1 2685 114 26 42 chr6 37456154 37456276 -144958966 + L1MB3 LINE L1 5561 5683 -500 2426 67 20 3 chr6 37456276 37456574 -144958668 + AluSq SINE Alu 1 303 -10 2685 114 26 42 chr6 37456574 37456908 -144958334 + L1MB3 LINE L1 5683 6010 -173 1716 162 27 68 chr6 37456908 37456966 -144958276 + MER57A LTR ERV1 7 66 -337 2287 109 3 10 chr6 37456966 37457279 -144957963 + AluSp SINE Alu 1 311 -2 1716 162 27 68 chr6 37457279 37457634 -144957608 + MER57A LTR ERV1 66 403 0 566 205 8 8 chr6 37457634 37457756 -144957486 + L1MB3 LINE L1 6006 6127 -56 2079 192 70 24 chr6 37458097 37458679 -144956563 + pTR5 LTR ERV1 734 1342 -1096 3672 139 57 135 chr6 37458691 37459582 -144955660 + LTR12 LTR ERV1 5 826 0 2074 126 3 3 chr6 37459651 37459937 -144955305 + AluSx SINE Alu 2 287 -25 2382 104 3 0 chr6 37460244 37460553 -144954689 - AluSp SINE Alu -3 310 1 2076 93 3 84 chr6 37461245 37461577 -144953665 - AluSq SINE Alu -8 305 1 2248 90 0 17 chr6 37461579 37461868 -144953374 - AluSq SINE Alu 0 313 30 1676 146 62 31 chr6 37461963 37462251 -144952991 - AluJb SINE Alu -15 297 1 1049 157 13 0 chr6 37463178 37463337 -144951905 - AluJb SINE Alu -18 294 134 2334 108 3 0 chr6 37463367 37463673 -144951569 + AluSx SINE Alu 3 309 -3 2323 112 0 3 chr6 37463673 37463985 -144951257 + AluSx SINE Alu 1 311 -1 639 267 12 6 chr6 37464356 37464517 -144950725 - MER58B DNA MER1_type -1 340 179 186 43 0 0 chr6 37464530 37464553 -144950689 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2317 122 0 0 chr6 37464560 37464872 -144950370 - AluJb SINE Alu 0 312 1 2195 96 11 0 chr6 37465183 37465487 -144949755 - AluSx SINE Alu 0 307 1 997 241 106 29 chr6 37465877 37466254 -144948988 - MLT1C LTR MaLR -3 464 59 183 42 0 0 chr6 37467611 37467635 -144947607 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1018 80 0 0 chr6 37467978 37468103 -144947139 - AluY SINE Alu -10 301 177 1826 88 4 28 chr6 37468103 37468354 -144946888 - AluY SINE Alu -66 245 1 1602 126 9 0 chr6 37468522 37468745 -144946497 - AluSg/x SINE Alu -3 307 83 1675 172 62 10 chr6 37468806 37469097 -144946145 + AluJb SINE Alu 1 306 -6 1915 152 14 3 chr6 37469781 37470064 -144945178 - AluJo SINE Alu -17 295 10 401 275 96 62 chr6 37471169 37471316 -144943926 - MIR SINE MIR 0 262 107 2324 75 0 0 chr6 37471316 37471594 -144943648 + AluSp SINE Alu 18 295 -18 401 275 96 62 chr6 37471594 37471624 -144943618 - MIR SINE MIR -155 107 79 2102 123 17 3 chr6 37471687 37471987 -144943255 - AluSq SINE Alu -9 304 1 340 85 0 0 chr6 37471988 37472035 -144943207 + MER112 DNA MER1_type 6 52 -208 1073 113 0 0 chr6 37472039 37472181 -144943061 + AluSq/x SINE Alu 5 146 -167 358 154 22 132 chr6 37472181 37472231 -144943011 + MER112 DNA MER1_type 7 61 -199 2253 116 0 0 chr6 37472231 37472525 -144942717 + AluSx SINE Alu 5 298 -14 358 154 22 132 chr6 37472525 37472610 -144942632 + MER112 DNA MER1_type 61 127 -133 273 172 16 0 chr6 37472614 37472678 -144942564 - MER57A LTR ERV1 0 403 339 819 180 8 0 chr6 37472678 37472806 -144942436 + FLAM_C SINE Alu 2 130 -3 1715 140 0 8 chr6 37472831 37473074 -144942168 + AluSx SINE Alu 60 300 -12 2195 123 0 0 chr6 37473155 37473448 -144941794 - AluSx SINE Alu -19 293 1 362 323 40 16 chr6 37473473 37473597 -144941645 + L2 LINE L2 3180 3306 -7 1357 320 68 9 chr6 37473602 37474148 -144941094 + L3 LINE CR1 564 1141 -436 235 322 28 11 chr6 37474262 37474442 -144940800 + L1M3 LINE L1 5254 5436 -732 239 233 44 11 chr6 37474443 37474533 -144940709 + L1ME LINE L1 52 144 -5975 2366 102 0 3 chr6 37474533 37474836 -144940406 + AluSx SINE Alu 1 302 -10 679 152 27 0 chr6 37475021 37475133 -144940109 - FLAM_C SINE Alu 0 143 29 411 313 50 35 chr6 37475283 37475484 -144939758 + L1ME LINE L1 520 723 -5396 1602 154 55 18 chr6 37475724 37475997 -144939245 + AluJb SINE Alu 15 297 -15 4368 130 23 140 chr6 37476120 37477600 -144937642 - pTR5 LTR ERV1 0 2606 1524 1738 147 19 4 chr6 37477600 37477696 -144937546 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 37477696 37477731 -144937511 + (CA)n Simple_repeat Simple_repeat 2 36 0 1738 147 19 4 chr6 37477731 37477893 -144937349 + AluSx SINE Alu 124 293 -19 1505 166 75 23 chr6 37477926 37478191 -144937051 + AluJb SINE Alu 11 289 -23 258 319 205 6 chr6 37479052 37479218 -144936024 + MIR SINE MIR 20 218 -44 1903 142 7 26 chr6 37479228 37479537 -144935705 - AluJo SINE Alu -6 306 4 743 284 78 33 chr6 37479641 37479923 -144935319 + L1ME LINE L1 680 991 -5128 1721 195 0 13 chr6 37479923 37480225 -144935017 + AluJb SINE Alu 1 298 -14 743 284 78 33 chr6 37480225 37480393 -144934849 + L1ME LINE L1 991 1150 -4969 262 293 53 0 chr6 37480430 37480505 -144934737 - L2 LINE L2 -6 3307 3229 2022 100 64 0 chr6 37480669 37480950 -144934292 + AluSg SINE Alu 12 310 0 270 284 28 28 chr6 37480993 37481102 -144934140 + HAL1 LINE L1 1500 1608 -899 374 226 113 30 chr6 37481188 37481321 -144933921 + L1MC5 LINE L1 7603 7746 -215 5671 143 126 34 chr6 37481329 37482500 -144932742 - MER52C LTR ERV1 0 1278 1 309 327 92 9 chr6 37482521 37482738 -144932504 + L1ME LINE L1 5426 5660 -510 1125 126 0 0 chr6 37482838 37482997 -144932245 - AluSp/q SINE Alu 0 313 155 297 163 0 0 chr6 37482997 37483046 -144932196 - pTR5 LTR ERV1 -1648 790 742 947 140 0 0 chr6 37483046 37483189 -144932053 + AluSg/x SINE Alu 148 290 -22 620 278 112 28 chr6 37483192 37483584 -144931658 + L1MC5 LINE L1 7253 7677 -284 2145 99 3 33 chr6 37484074 37484400 -144930842 + AluSc SINE Alu 1 309 0 1845 90 0 0 chr6 37484494 37484745 -144930497 + AluSg SINE Alu 60 310 0 2297 72 0 4 chr6 37484942 37485220 -144930022 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 37485221 37485257 -144929985 + (CA)n Simple_repeat Simple_repeat 2 37 0 1102 331 56 53 chr6 37485272 37485419 -144929823 - HERVL LTR ERVL -2851 2145 2000 1551 184 20 16 chr6 37485419 37485723 -144929519 - AluJo SINE Alu -1 311 7 1102 331 56 53 chr6 37485723 37485913 -144929329 - HERVL LTR ERVL -2996 2000 1812 1937 137 7 11 chr6 37485913 37486220 -144929022 - AluJb SINE Alu 0 306 1 1102 331 56 53 chr6 37486220 37486262 -144928980 - HERVL LTR ERVL -3184 1812 1772 2256 106 6 13 chr6 37486262 37486754 -144928488 - AluSg SINE Alu 0 310 1 1102 331 56 53 chr6 37486754 37487850 -144927392 - HERVL LTR ERVL -3224 1772 736 443 345 0 0 chr6 37487974 37488145 -144927097 - HERVL LTR ERVL -5148 616 446 799 163 8 0 chr6 37488158 37488281 -144926961 - FLAM_C SINE Alu -8 125 2 2188 105 10 7 chr6 37488672 37488968 -144926274 - AluSp SINE Alu -16 297 1 395 228 8 41 chr6 37488986 37489109 -144926133 - LTR41 LTR ERVL -6 767 649 597 178 8 8 chr6 37489621 37489739 -144925503 - LTR41 LTR ERVL -585 188 71 768 176 16 0 chr6 37489761 37489886 -144925356 + FLAM_A SINE Alu 1 127 -6 375 241 75 92 chr6 37490003 37490130 -144925112 + L1M4 LINE L1 4163 4291 -1855 2469 97 0 0 chr6 37490130 37490440 -144924802 - AluSq SINE Alu -3 310 1 375 241 75 92 chr6 37490440 37490519 -144924723 + L1M4 LINE L1 4291 4370 -1776 1837 177 7 3 chr6 37490519 37490819 -144924423 + AluJo SINE Alu 3 303 -9 375 241 75 92 chr6 37490819 37490906 -144924336 + L1M4 LINE L1 4370 4452 -1694 1304 305 72 39 chr6 37490929 37491116 -144924126 + L1M4 LINE L1 10 189 -6353 2210 85 0 7 chr6 37491116 37491444 -144923798 - AluSc SINE Alu 0 326 1 1304 305 72 39 chr6 37491444 37492004 -144923238 + L1M4 LINE L1 189 784 -5758 460 118 35 0 chr6 37492048 37492133 -144923109 + CT-rich Low_complexity Low_complexity 2 89 0 1649 101 5 5 chr6 37492133 37492350 -144922892 - AluSq SINE Alu -95 218 2 2248 73 7 0 chr6 37592667 37592939 -144822303 + AluSq SINE Alu 1 274 -39 2527 72 0 7 chr6 37593047 37593353 -144821889 - AluY SINE Alu -7 304 1 195 212 106 30 chr6 37593500 37593566 -144821676 + L2 LINE L2 3202 3272 0 394 253 152 86 chr6 37594067 37594324 -144820918 + L2 LINE L2 2175 2448 -866 436 332 99 36 chr6 37594822 37595214 -144820028 + L2 LINE L2 2458 2874 -440 1398 101 0 11 chr6 37595623 37595811 -144819431 + AluSg/x SINE Alu 99 284 -26 264 200 0 0 chr6 37595811 37595866 -144819376 + (TA)n Simple_repeat Simple_repeat 1 55 0 1632 163 7 24 chr6 37595906 37596194 -144819048 - AluJb SINE Alu -14 298 16 2397 47 0 20 chr6 37596950 37597247 -144817995 + AluY SINE Alu 1 291 -20 1643 75 133 61 chr6 37597259 37597537 -144817705 + AluSx SINE Alu 1 298 -14 1443 92 0 5 chr6 37597611 37597833 -144817409 - AluSq SINE Alu 0 327 107 339 25 0 0 chr6 37597838 37597878 -144817364 + (TA)n Simple_repeat Simple_repeat 1 40 0 3679 133 28 0 chr6 37597878 37598449 -144816793 - Harlequin LTR ERV1 -424 6472 5886 * 14715 83 13 3 chr6 37598443 37600459 -144814783 - Harlequin LTR ERV1 -1509 5387 3352 6743 43 40 9 chr6 37600458 37601431 -144813811 - Harlequin LTR ERV1 -4322 2574 1572 * 6197 70 35 16 chr6 37601424 37602300 -144812942 - Harlequin LTR ERV1 -6003 893 1 * 3971 52 23 0 chr6 37602300 37602779 -144812463 - LTR2B LTR ERV1 0 490 1 444 165 0 0 chr6 37602825 37602904 -144812338 + L1PA15 LINE L1 6051 6129 -36 2348 113 0 0 chr6 37602914 37603223 -144812019 + AluSx SINE Alu 1 309 -3 2211 86 31 7 chr6 37603421 37603713 -144811529 - AluSx SINE Alu -13 299 1 558 167 0 0 chr6 37603717 37603819 -144811423 - L1PA15 LINE L1 -13 6152 6051 190 244 67 0 chr6 37603857 37603902 -144811340 - L2 LINE L2 -4 3268 3221 2439 71 0 3 chr6 37604087 37604381 -144810861 - AluY SINE Alu -16 295 3 2149 123 3 26 chr6 37604394 37604703 -144810539 - AluY SINE Alu -9 302 1 1075 109 0 27 chr6 37604703 37604839 -144810403 - AluSq/x SINE Alu -179 134 1 2209 110 3 0 chr6 37604860 37605151 -144810091 - AluSp SINE Alu -19 294 3 77 17 0 26 chr6 37605154 37605222 -144810020 + AT_rich Low_complexity Low_complexity 1 69 -45 1286 78 6 0 chr6 37605222 37605389 -144809853 - L1PA8 LINE L1 -11 6161 5994 1900 144 35 3 chr6 37605391 37605675 -144809567 - AluSx SINE Alu -18 294 2 77 17 0 26 chr6 37605675 37605720 -144809522 + AT_rich Low_complexity Low_complexity 70 114 0 896 231 125 3 chr6 37605720 37605901 -144809341 - L1ME2 LINE L1 -2 6162 6004 2265 118 3 0 chr6 37605901 37606207 -144809035 - AluSx SINE Alu -5 307 1 896 231 125 3 chr6 37606207 37606336 -144808906 - L1ME2 LINE L1 -160 6004 5814 1184 124 26 26 chr6 37606345 37606538 -144808704 - AluSc SINE Alu -15 294 102 971 103 0 0 chr6 37606538 37606664 -144808578 + AluSp/q SINE Alu 166 291 -22 593 257 158 0 chr6 37606664 37606816 -144808426 + FRAM SINE Alu 1 40 0 2032 116 14 3 chr6 37606912 37607204 -144808038 - AluSx SINE Alu -14 298 4 2354 90 0 7 chr6 37607249 37607549 -144807693 - AluSg SINE Alu -12 298 1 2558 61 0 0 chr6 37607723 37608020 -144807222 + AluY SINE Alu 1 297 -14 1884 149 20 23 chr6 37608043 37608345 -144806897 - AluSx SINE Alu -11 301 1 2048 129 27 0 chr6 37608367 37608661 -144806581 - AluSq SINE Alu -11 302 1 2130 124 3 10 chr6 37608818 37609125 -144806117 - AluSx SINE Alu -7 305 1 1010 159 0 6 chr6 37609125 37609288 -144805954 - AluSg/x SINE Alu -6 306 145 534 178 8 85 chr6 37609739 37609814 -144805428 + MER5A DNA MER1_type 1 65 -124 2362 82 0 3 chr6 37609814 37610130 -144805112 + AluSq SINE Alu 1 313 0 534 178 8 85 chr6 37610130 37610172 -144805070 + MER5A DNA MER1_type 65 109 -80 443 335 46 57 chr6 37610419 37610700 -144804542 + L2 LINE L2 2994 3271 -1 24 53 0 0 chr6 37611209 37611247 -144803995 + AT_rich Low_complexity Low_complexity 1 38 0 5026 139 17 124 chr6 37611283 37612828 -144802414 + pTR5 LTR ERV1 744 2606 0 701 109 10 0 chr6 37612869 37612970 -144802272 - FRAM SINE Alu -34 142 41 1985 93 24 0 chr6 37613232 37613523 -144801719 - AluSx SINE Alu -14 298 1 2040 95 7 7 chr6 37614441 37614736 -144800506 - AluSx SINE Alu -17 295 1 1646 155 10 16 chr6 37614768 37615072 -144800170 + AluJb SINE Alu 1 302 -10 189 107 0 0 chr6 37615074 37615102 -144800140 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2073 107 4 0 chr6 37615194 37615475 -144799767 + AluSq SINE Alu 14 295 -18 1214 224 28 50 chr6 37616180 37616502 -144798740 + MLT1A2 LTR MaLR 56 370 -4 471 192 98 62 chr6 37616580 37616773 -144798469 - L2 LINE L2 0 3313 3114 2066 108 0 0 chr6 37616790 37617067 -144798175 + AluSg SINE Alu 2 278 -32 195 42 0 0 chr6 37617076 37617100 -144798142 + (TA)n Simple_repeat Simple_repeat 2 25 0 1074 233 158 65 chr6 37617101 37617575 -144797667 - MLT1G1 LTR MaLR -58 495 15 382 265 70 32 chr6 37617582 37617620 -144797622 - L2 LINE L2 -163 3150 3115 2233 104 0 3 chr6 37617620 37617929 -144797313 + AluSc SINE Alu 1 308 -1 382 265 70 32 chr6 37617929 37618075 -144797167 - L2 LINE L2 -198 3115 2959 3883 130 18 12 chr6 37619446 37620044 -144795198 + LTR43 LTR ERV1 1 602 0 39815 10 6 12 chr6 37620044 37620386 -144794856 + LTR43-int LTR ERV1 1 344 -4454 2228 99 0 3 chr6 37620386 37620690 -144794552 - AluSg SINE Alu -6 304 2 39815 10 6 12 chr6 37620690 37621331 -144793911 + LTR43-int LTR ERV1 344 987 -3811 2115 98 7 0 chr6 37621331 37621617 -144793625 + AluSp SINE Alu 5 292 -21 39815 10 6 12 chr6 37621617 37622232 -144793010 + LTR43-int LTR ERV1 987 1604 -3194 2127 110 0 7 chr6 37622232 37622532 -144792710 - AluSx SINE Alu -14 298 1 39815 10 6 12 chr6 37622532 37622819 -144792423 + LTR43-int LTR ERV1 1604 1891 -2907 2349 85 0 0 chr6 37622819 37623125 -144792117 + AluSg SINE Alu 5 310 0 39815 10 6 12 chr6 37623125 37623266 -144791976 + LTR43-int LTR ERV1 1891 2031 -2767 2239 83 0 0 chr6 37623266 37623555 -144791687 + AluSg SINE Alu 1 289 -21 39815 10 6 12 chr6 37623555 37623620 -144791622 + LTR43-int LTR ERV1 2031 2095 -2703 2004 108 4 0 chr6 37623620 37623898 -144791344 + AluSx SINE Alu 34 312 0 39815 10 6 12 chr6 37623898 37625454 -144789788 + LTR43-int LTR ERV1 2095 3659 -1139 199 232 58 43 chr6 37625454 37625523 -144789719 + L2 LINE L2 1720 1789 -1525 39815 10 6 12 chr6 37625523 37625735 -144789507 + LTR43-int LTR ERV1 3659 3871 -927 2295 89 7 0 chr6 37625735 37626037 -144789205 + AluSc SINE Alu 1 304 -5 39815 10 6 12 chr6 37626037 37626661 -144788581 + LTR43-int LTR ERV1 3871 4531 -267 1360 110 9 37 chr6 37626661 37626879 -144788363 + AluSg/x SINE Alu 85 296 -16 2621 0 0 0 chr6 37626880 37627157 -144788085 + LTR43-int LTR ERV1 4522 4798 0 4283 102 3 26 chr6 37627157 37627773 -144787469 + LTR43 LTR ERV1 1 602 0 812 154 21 14 chr6 37627802 37627945 -144787297 + L1MC3 LINE L1 6698 6841 -944 1592 90 0 5 chr6 37627949 37628160 -144787082 + AluSg SINE Alu 3 212 -98 926 176 47 59 chr6 37628167 37628296 -144786946 + L1M4 LINE L1 4531 4657 -1489 2345 69 26 0 chr6 37628296 37628600 -144786642 + AluSq SINE Alu 1 312 -1 926 176 47 59 chr6 37628600 37628726 -144786516 + L1M4 LINE L1 4657 4783 -1363 * 3268 138 65 95 chr6 37628716 37628878 -144786364 + L1MA8 LINE L1 5552 5717 -574 585 250 8 0 chr6 37628878 37629010 -144786232 - FLAM_A SINE Alu 0 133 1 3268 138 65 95 chr6 37629010 37629349 -144785893 + L1MA8 LINE L1 5717 6065 -226 2023 98 9 35 chr6 37629349 37629664 -144785578 + AluSx SINE Alu 1 307 -5 1646 142 41 8 chr6 37629669 37629936 -144785306 - AluSx SINE Alu -36 276 1 3268 138 65 95 chr6 37629936 37630187 -144785055 + L1MA8 LINE L1 6069 6288 -3 827 157 79 6 chr6 37630199 37630377 -144784865 + L1M4 LINE L1 4762 4952 -1194 904 223 44 23 chr6 37630794 37631100 -144784142 - MSTD LTR MaLR -8 388 16 4354 87 2 0 chr6 37631100 37631653 -144783589 + MER41A LTR ERV1 1 554 0 2064 95 30 3 chr6 37631684 37631979 -144783263 - AluSp SINE Alu -10 303 1 2516 124 136 69 chr6 37632279 37632786 -144782456 + LTR10B LTR ERV1 1 541 -6 2054 129 0 3 chr6 37632812 37633123 -144782119 - AluSg SINE Alu 0 310 1 1913 91 94 0 chr6 37633125 37633401 -144781841 - AluSq SINE Alu -11 302 1 1313 183 91 112 chr6 37633438 37633913 -144781329 - MER4C LTR ERV1 0 465 1 923 229 10 0 chr6 37633917 37634118 -144781124 - MER4C-int LTR ERV1 -1 6597 6395 266 246 33 57 chr6 37634147 37634269 -144780973 - MER4C-int LTR ERV1 -170 6428 6310 386 228 150 0 chr6 37634273 37634400 -144780842 - MER4C LTR ERV1 -205 260 158 5630 116 45 42 chr6 37634450 37634838 -144780404 - LTR49-int LTR ERV1 -520 5811 5426 2046 102 7 3 chr6 37634838 37635132 -144780110 - AluSp SINE Alu -18 295 1 5630 116 45 42 chr6 37635132 37635588 -144779654 - LTR49-int LTR ERV1 -905 5426 4961 2205 102 0 0 chr6 37635588 37635891 -144779351 + AluSg SINE Alu 1 303 -7 5630 116 45 42 chr6 37635891 37636082 -144779160 - LTR49-int LTR ERV1 -1370 4961 4772 1983 104 7 7 chr6 37636083 37636390 -144778852 + AluSg SINE Alu 1 307 0 820 184 18 64 chr6 37636392 37636610 -144778632 - LTR49-int LTR ERV1 -1969 2911 2704 1727 100 0 4 chr6 37636625 37636864 -144778378 - AluSc SINE Alu -71 238 1 1068 216 85 97 chr6 37636864 37637424 -144777818 - LTR49-int LTR ERV1 -2614 2266 1700 2356 93 0 0 chr6 37637424 37637734 -144777508 + AluSg SINE Alu 1 310 0 1068 216 85 97 chr6 37637734 37638023 -144777219 - LTR49-int LTR ERV1 -3180 1700 1001 2168 74 25 3 chr6 37638101 37638385 -144776857 - AluSc SINE Alu -19 290 1 608 148 87 54 chr6 37638397 37638546 -144776696 - LTR49-int LTR ERV1 -5184 1147 994 251 135 115 19 chr6 37638556 37638608 -144776634 - LTR49 LTR ERV1 -276 319 263 3355 78 41 0 chr6 37639226 37639661 -144775581 + MLT2A2 LTR ERVL 1 453 0 2100 104 3 0 chr6 37639848 37640146 -144775096 - AluSp SINE Alu -14 299 1 290 348 0 0 chr6 37641009 37641098 -144774144 - MER82 DNA MER2_type -61 592 504 2280 74 14 0 chr6 37641439 37641735 -144773507 - AluY SINE Alu -11 300 1 8657 219 48 25 chr6 37641735 37642582 -144772660 - HERV3 LTR ERV1 -1084 7342 6516 2443 43 0 13 chr6 37642582 37642884 -144772358 - AluY SINE Alu -13 298 1 8657 219 48 25 chr6 37642884 37643864 -144771378 - HERV3 LTR ERV1 -1910 6516 5469 1123 178 12 89 chr6 37643865 37643986 -144771256 - LTR61 LTR ERV1 -329 266 174 2219 90 0 0 chr6 37643986 37644275 -144770967 + AluY SINE Alu 1 289 -22 1123 178 12 89 chr6 37644275 37644411 -144770831 - LTR61 LTR ERV1 -421 174 29 183 42 0 0 chr6 37644411 37644435 -144770807 + (TTA)n Simple_repeat Simple_repeat 1 24 0 983 313 44 21 chr6 37644566 37645000 -144770242 + LTR33 LTR ERVL 10 453 -68 2154 93 3 0 chr6 37645008 37645297 -144769945 + AluSp SINE Alu 7 296 -17 228 91 0 0 chr6 37645298 37645331 -144769911 + LTR33 LTR ERVL 485 517 -4 2112 99 17 3 chr6 37646024 37646326 -144768916 - AluSq SINE Alu -7 306 1 537 130 98 0 chr6 37646719 37646842 -144768400 + L1MB7 LINE L1 6037 6171 -13 517 267 144 25 chr6 37646855 37647296 -144767946 + L1ME3A LINE L1 5434 5937 -233 557 234 22 54 chr6 37647763 37647947 -144767295 + MER3 DNA MER1_type 4 181 -28 703 132 9 9 chr6 37647964 37648078 -144767164 - MER9 LTR ERVK 0 511 398 3669 98 8 6 chr6 37648080 37648593 -144766649 - HERVK9 LTR ERVK -821 5095 4582 1833 70 4 0 chr6 37648592 37648822 -144766420 - HERVK9 LTR ERVK -1975 3941 3711 * 20385 80 4 10 chr6 37648823 37651568 -144763674 - HERVK9 LTR ERVK -3131 2785 1 3685 113 0 6 chr6 37651568 37652082 -144763160 - MER9 LTR ERVK 0 511 1 402 74 0 0 chr6 37652391 37652445 -144762797 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1633 108 0 0 chr6 37652447 37652679 -144762563 - AluSg/x SINE Alu -15 297 66 2068 98 37 0 chr6 37652905 37653201 -144762041 + AluSx SINE Alu 1 307 -5 890 174 6 0 chr6 37653263 37653424 -144761818 - FRAM SINE Alu -15 161 1 23 0 0 0 chr6 37653754 37653777 -144761465 + AT_rich Low_complexity Low_complexity 1 23 0 1972 144 7 0 chr6 37655512 37655842 -144759400 + AluSx SINE Alu 1 312 0 213 313 89 16 chr6 37655894 37656053 -144759189 + MIR SINE MIR 21 201 -61 1895 144 0 7 chr6 37656128 37656426 -144758816 - AluSq SINE Alu -17 296 1 2238 154 21 5 chr6 37656839 37657223 -144758019 - MLT1B LTR MaLR 0 390 1 720 64 0 0 chr6 37657248 37657342 -144757900 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2157 120 0 0 chr6 37657354 37657662 -144757580 - AluSx SINE Alu -4 308 1 598 286 40 0 chr6 37658702 37658877 -144756365 + MLT1G1 LTR MaLR 11 192 -403 1652 186 73 13 chr6 37659002 37659481 -144755761 - L1M4 LINE L1 -3828 3020 2513 1362 243 48 6 chr6 37659487 37659820 -144755422 - MLT2C2 LTR ERVL -116 348 2 3703 211 18 38 chr6 37659823 37660255 -144754987 - ERVL-C2 LTR ERVL -7 5757 5350 1466 190 7 18 chr6 37660255 37660568 -144754674 - AluJb SINE Alu 0 316 7 3703 211 18 38 chr6 37660568 37661020 -144754222 - ERVL-C2 LTR ERVL -414 5350 4890 12952 198 15 18 chr6 37661022 37664794 -144750448 + L1PA12 LINE L1 1328 5902 -1682 700 268 126 0 chr6 37664793 37664983 -144750259 - L1M4 LINE L1 -5705 1144 931 * 443 172 54 0 chr6 37665175 37665268 -144749974 + L1MA7 LINE L1 6188 6285 -6 400 327 65 5 chr6 37665281 37665480 -144749762 - L1MEc LINE L1 -4763 1633 1423 1003 255 19 15 chr6 37665639 37665902 -144749340 + MLT2D LTR ERVL 1 264 -150 1416 224 6 54 chr6 37665904 37666253 -144748989 + MER21B-int LTR ERV1 2341 2672 -1519 765 168 22 0 chr6 37666253 37666390 -144748852 + MSTA LTR MaLR 1 140 -288 435 200 0 0 chr6 37666393 37666468 -144748774 + MER21B-int LTR ERV1 2665 2739 -1452 373 287 70 0 chr6 37666474 37666603 -144748639 + FRAM SINE Alu 16 153 -13 1811 248 50 48 chr6 37666603 37666934 -144748308 + MER21B-int LTR ERV1 2728 3062 -1129 4746 164 13 3 chr6 37666934 37667709 -144747533 - LTR39 LTR ERV1 0 783 1 1811 248 50 48 chr6 37667709 37667961 -144747281 + MER21B-int LTR ERV1 3062 3312 -879 2455 204 39 16 chr6 37668060 37668624 -144746618 + MER21B-int LTR ERV1 3463 4039 -152 41510 71 4 7 chr6 37668639 37669013 -144746229 - L1PA6 LINE L1 -4 6150 5777 2388 88 3 3 chr6 37669013 37669319 -144745923 - AluY SINE Alu -5 306 1 41510 71 4 7 chr6 37669319 37675097 -144740145 - L1PA6 LINE L1 -377 5777 11 1569 217 3 3 chr6 37675200 37675495 -144739747 + AluJo SINE Alu 1 295 -17 1768 247 4 43 chr6 37675553 37676018 -144739224 + MER21B LTR ERV1 19 465 -398 617 270 133 19 chr6 37676019 37676338 -144738904 + MSTD LTR MaLR 1 348 -17 1895 146 8 62 chr6 37676349 37676705 -144738537 + MER1B DNA MER1_type 1 337 0 1503 174 16 86 chr6 37676741 37677332 -144737910 + MER4A LTR ERV1 1 465 0 873 256 51 33 chr6 37677345 37677618 -144737624 + MER21B LTR ERV1 505 782 -81 4777 60 12 14 chr6 37677649 37678684 -144736558 - MER11A LTR ERVK 0 1266 1 3216 127 20 49 chr6 37679312 37679942 -144735300 - MER4B LTR ERV1 0 779 1 358 156 89 44 chr6 37680066 37680156 -144735086 - LTR19C LTR ERV1 0 779 686 1616 116 10 93 chr6 37680157 37680458 -144734784 - LTR9 LTR ERV1 -336 276 1 458 286 21 84 chr6 37680463 37680750 -144734492 + LTR67 LTR ERVL 185 453 -104 267 266 64 11 chr6 37681239 37681333 -144733909 + MER5A DNA MER1_type 4 102 -87 1786 252 100 26 chr6 37681436 37682501 -144732741 + L2 LINE L2 2107 3252 -61 950 316 46 17 chr6 37687967 37688558 -144726684 - L1MEc LINE L1 -4155 2241 1634 261 0 0 0 chr6 37688582 37688611 -144726631 + (T)n Simple_repeat Simple_repeat 1 29 0 222 271 31 21 chr6 37688767 37688863 -144726379 + C-rich Low_complexity Low_complexity 4 100 0 1930 243 60 39 chr6 37688887 37689550 -144725692 - L1ME1 LINE L1 -112 6054 5378 255 305 31 31 chr6 37689571 37689699 -144725543 - L1ME1 LINE L1 -1843 4303 4176 750 157 36 29 chr6 37689707 37689847 -144725395 - FLAM_C SINE Alu 0 143 3 926 62 16 0 chr6 37689914 37690043 -144725199 + L1PA8A LINE L1 5267 5397 -734 242 301 6 54 chr6 37691304 37691470 -144723772 + A-rich Low_complexity Low_complexity 1 158 0 5240 97 21 3 chr6 37693891 37694620 -144720622 + L1PA8A LINE L1 5387 6128 -3 872 87 10 1 chr6 37694628 37694757 -144720485 + L1PA13 LINE L1 5655 5790 -373 2873 70 0 41 chr6 37696050 37696465 -144718777 + L1PA13 LINE L1 5766 6163 0 999 291 54 42 chr6 37696667 37697186 -144718056 + L1MEc LINE L1 1516 2040 -4356 342 92 46 15 chr6 37697199 37697264 -144717978 + L1P LINE L1 3148 3214 -2932 212 57 0 29 chr6 37697264 37697299 -144717943 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1403 201 14 27 chr6 37697588 37697881 -144717361 + AluJo SINE Alu 1 289 -23 1833 54 13 5 chr6 37698185 37698409 -144716833 - AluY SINE Alu -85 226 1 948 212 45 74 chr6 37699150 37699569 -144715673 - L1MC5 LINE L1 -470 7491 7085 697 271 174 12 chr6 37699614 37699942 -144715300 + L1ME3A LINE L1 5615 5995 -175 394 285 53 58 chr6 37703660 37704036 -144711206 - L1ME LINE L1 -4863 1679 1306 297 343 17 42 chr6 37704022 37704258 -144710984 - L1ME LINE L1 -5589 1045 816 * 288 200 62 0 chr6 37704670 37704750 -144710492 - L1ME LINE L1 -5937 697 613 1757 177 0 7 chr6 37704915 37705209 -144710033 + AluJb SINE Alu 1 292 -20 426 20 0 0 chr6 37705843 37705894 -144709348 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 288 82 29 chr6 37705958 37706283 -144708959 + MERVL LTR ERVL 3330 3633 -2021 450 326 34 17 chr6 37706323 37706556 -144708686 + MERVL LTR ERVL 3739 3975 -1789 422 299 112 74 chr6 37706913 37707549 -144707693 + L1MEd LINE L1 431 1090 -5029 386 293 30 96 chr6 37708243 37708513 -144706729 + MIR SINE MIR 11 262 0 650 216 40 61 chr6 37709938 37710216 -144705026 + L1MB8 LINE L1 4140 4411 -1735 1969 204 18 26 chr6 37710218 37710709 -144704533 + L1MB8 LINE L1 4806 5292 -854 264 57 19 38 chr6 37710709 37710762 -144704480 + (TAA)n Simple_repeat Simple_repeat 3 54 0 3195 211 62 17 chr6 37710770 37711538 -144703704 + L1MB8 LINE L1 5360 6162 -16 2723 201 8 4 chr6 37712404 37712902 -144702340 + MLT1D LTR MaLR 1 500 -5 321 261 11 23 chr6 37713196 37713284 -144701958 - MLT2E LTR ERVL -510 118 32 4215 74 2 2 chr6 37713555 37714097 -144701145 - L1PA8 LINE L1 -2 6170 5629 1038 362 53 26 chr6 37715269 37716461 -144698781 + MERVL LTR ERVL 3792 5068 -696 22 35 0 0 chr6 37716584 37716613 -144698629 + AT_rich Low_complexity Low_complexity 1 29 0 4618 98 29 26 chr6 37716678 37717350 -144697892 - L1PB2 LINE L1 0 6151 5475 2227 112 0 0 chr6 37717350 37717644 -144697598 - AluY SINE Alu -17 294 1 4618 98 29 26 chr6 37717644 37717688 -144697554 - L1PB2 LINE L1 -676 5475 5433 228 227 0 0 chr6 37717695 37717739 -144697503 - L2 LINE L2 -3 3310 3267 212 361 69 21 chr6 37717935 37718226 -144697016 - L2 LINE L2 -374 2940 2636 1578 211 162 41 chr6 37719195 37719683 -144695559 + MLT1E LTR MaLR 43 589 -4 570 250 118 5 chr6 37720363 37720567 -144694675 + MIR SINE MIR 3 229 -33 229 145 0 58 chr6 37720783 37720852 -144694390 + (CATA)n Simple_repeat Simple_repeat 4 68 0 231 330 0 11 chr6 37720853 37720941 -144694301 + (CA)n Simple_repeat Simple_repeat 2 88 0 2828 29 0 0 chr6 37721432 37721743 -144693499 + AluY SINE Alu 1 311 0 327 96 0 0 chr6 37722108 37722160 -144693082 + (GGA)n Simple_repeat Simple_repeat 1 52 0 291 322 173 0 chr6 37723964 37724172 -144691070 + MIR SINE MIR 8 251 -11 669 349 79 31 chr6 37725226 37725399 -144689843 + L1M4 LINE L1 4097 4260 -1886 342 45 0 0 chr6 37725399 37725443 -144689799 + (TA)n Simple_repeat Simple_repeat 2 45 0 2191 36 0 16 chr6 37725443 37725696 -144689546 - AluY SINE Alu -6 305 57 669 349 79 31 chr6 37725696 37726332 -144688910 + L1M4 LINE L1 4259 4946 -1200 280 298 133 26 chr6 37726518 37726669 -144688573 - ERVL LTR ERVL -3801 1963 1797 209 225 0 0 chr6 37727066 37727106 -144688136 + MER5A DNA MER1_type 150 189 0 433 288 17 28 chr6 37727117 37727294 -144687948 - MER5B DNA MER1_type -3 175 1 347 260 54 39 chr6 37727457 37727661 -144687581 - LTR33 LTR ERVL -312 209 3 250 234 16 0 chr6 37727664 37727728 -144687514 + L1ME3 LINE L1 4093 4157 -1989 266 272 151 20 chr6 37727734 37728039 -144687203 + L1ME3 LINE L1 4259 4603 -1543 549 153 97 0 chr6 37728182 37728306 -144686936 + L1MB7 LINE L1 6036 6171 -13 591 313 88 25 chr6 37728314 37728793 -144686449 + L1ME3 LINE L1 5429 5937 -225 624 224 12 53 chr6 37729272 37729442 -144685800 + MER3 DNA MER1_type 19 181 -28 415 254 8 17 chr6 37730141 37730259 -144684983 - MIR SINE MIR -18 244 128 887 128 43 7 chr6 37730617 37730758 -144684484 - AluJo SINE Alu -45 267 122 2439 129 26 0 chr6 37732395 37732775 -144682467 - MLT1B LTR MaLR 0 390 1 616 221 47 47 chr6 37733819 37733991 -144681251 + MLT1G1 LTR MaLR 11 182 -413 1411 172 109 62 chr6 37734125 37734207 -144681035 - L1M4 LINE L1 -3828 2554 2477 2156 117 0 7 chr6 37734207 37734505 -144680737 - AluSg SINE Alu -14 296 1 1411 172 109 62 chr6 37734505 37734913 -144680329 - L1M4 LINE L1 -3905 2477 2043 1293 253 8 4 chr6 37734914 37735253 -144679989 - MLT2C1 LTR ERVL -99 298 1 2966 205 34 57 chr6 37735260 37735675 -144679567 - ERVL-C1 LTR ERVL -16 5748 5357 1617 179 11 21 chr6 37735675 37735994 -144679248 - AluJb SINE Alu 0 316 1 2966 205 34 57 chr6 37735994 37736352 -144678890 - ERVL-C1 LTR ERVL -407 5357 4992 1829 178 49 40 chr6 37736352 37736820 -144678422 + L1P3 LINE L1 1328 2505 -5079 * 9307 204 7 9 chr6 37736819 37738730 -144676512 + L1P3 LINE L1 2733 4638 -2946 2226 100 10 3 chr6 37738731 37739030 -144676212 - AluSq SINE Alu -12 301 1 6072 98 34 8 chr6 37739031 37739159 -144676083 + L1PA13 LINE L1 4603 4726 -1437 2135 128 0 7 chr6 37739159 37739456 -144675786 - AluSg SINE Alu -13 297 3 6072 98 34 8 chr6 37739456 37740859 -144674383 + L1PA13 LINE L1 4726 6163 0 495 226 19 0 chr6 37740862 37740968 -144674274 - ERVL LTR ERVL -3552 2212 2105 885 189 27 0 chr6 37740989 37741174 -144674068 - L1 LINE L1 -2688 4160 3971 1957 181 41 102 chr6 37741187 37741739 -144673503 - LTR10E LTR ERV1 -42 591 79 1973 100 3 63 chr6 37741739 37742068 -144673174 - AluSg SINE Alu 0 311 1 1957 181 41 102 chr6 37742068 37742143 -144673099 - LTR10E LTR ERV1 -554 79 1 13077 268 68 69 chr6 37742146 37742694 -144672548 - HERVI LTR ERV1 -1 7784 7237 5532 72 14 24 chr6 37742694 37743460 -144671782 + SVA Other Other 627 1385 -1 13077 268 68 69 chr6 37743460 37743519 -144671723 - HERVI LTR ERV1 -548 7237 7179 2118 101 47 0 chr6 37743519 37743797 -144671445 - AluSg SINE Alu -19 291 1 13077 268 68 69 chr6 37743797 37750845 -144664397 - HERVI LTR ERV1 -606 7179 26 2026 173 51 103 chr6 37750886 37751498 -144663744 - LTR10E LTR ERV1 -42 591 12 8349 214 36 21 chr6 37751508 37752656 -144662586 - L1 LINE L1 -2873 3975 2845 3786 98 2 4 chr6 37752656 37753168 -144662074 - MER9 LTR ERVK 0 511 1 8349 214 36 21 chr6 37753168 37753614 -144661628 - L1 LINE L1 -4003 2845 2407 2202 113 0 31 chr6 37753614 37753933 -144661309 + AluSc SINE Alu 1 309 0 8349 214 36 21 chr6 37753933 37755356 -144659886 - L1 LINE L1 -4441 2407 913 2057 128 3 3 chr6 37755489 37755810 -144659432 - AluSg SINE Alu 0 321 1 345 186 44 62 chr6 37755828 37755941 -144659301 + L1MA7 LINE L1 6178 6288 -3 237 295 27 9 chr6 37755967 37756079 -144659163 - L1M4c LINE L1 -4752 1632 1519 7441 48 2 0 chr6 37756334 37757466 -144657776 + L1PA5 LINE L1 5020 6153 -1 875 282 8 8 chr6 37757466 37757718 -144657524 + MLT2D LTR ERVL 14 265 -149 1369 223 6 57 chr6 37757719 37758069 -144657173 + MER21B-int LTR ERV1 2341 2672 -1519 629 218 14 27 chr6 37758069 37758216 -144657026 + MSTA LTR MaLR 1 145 -283 347 260 0 0 chr6 37758216 37758289 -144656953 + MER21B-int LTR ERV1 2667 2739 -1452 428 266 63 0 chr6 37758295 37758438 -144656804 + FRAM SINE Alu 16 167 -9 1906 261 37 37 chr6 37758448 37758760 -144656482 + MER21B-int LTR ERV1 2742 3056 -1135 4296 165 23 20 chr6 37758760 37759541 -144655701 - LTR39 LTR ERV1 0 783 1 1906 261 37 37 chr6 37759541 37759800 -144655442 + MER21B-int LTR ERV1 3055 3313 -878 2602 187 41 19 chr6 37759901 37760467 -144654775 + MER21B-int LTR ERV1 3463 4040 -151 1598 215 3 0 chr6 37760564 37760862 -144654380 + AluJo SINE Alu 1 299 -13 1759 235 17 51 chr6 37760913 37761385 -144653857 + MER21B LTR ERV1 10 465 -398 638 231 83 30 chr6 37761386 37761704 -144653538 + MSTD LTR MaLR 1 348 -17 1949 143 9 57 chr6 37761715 37762065 -144653177 + MER1B DNA MER1_type 1 333 -6 1429 191 19 78 chr6 37762100 37762683 -144652559 + MER4A LTR ERV1 1 465 0 828 265 52 29 chr6 37762696 37762968 -144652274 + MER21B LTR ERV1 505 782 -81 23 0 0 0 chr6 37763229 37763252 -144651990 + AT_rich Low_complexity Low_complexity 1 23 0 3096 142 22 54 chr6 37763636 37764229 -144651013 - MER4B LTR ERV1 -36 574 1 570 279 50 81 chr6 37764258 37764356 -144650886 + LTR67 LTR ERVL 82 182 -375 3001 157 37 55 chr6 37764356 37764979 -144650263 - LTR9 LTR ERV1 0 612 1 570 279 50 81 chr6 37764979 37765264 -144649978 + LTR67 LTR ERVL 182 453 -104 243 325 78 26 chr6 37765597 37765751 -144649491 + MER5B DNA MER1_type 1 162 -16 315 261 68 0 chr6 37765775 37765863 -144649379 + MER5A DNA MER1_type 9 102 -87 181 169 92 62 chr6 37765905 37765970 -144649272 - L3 LINE CR1 -460 1117 1051 * 2266 261 88 20 chr6 37765943 37767101 -144648141 + L2 LINE L2 2074 3311 -2 238 323 115 15 chr6 37767113 37767243 -144647999 - L3 LINE CR1 -550 1027 885 215 182 0 36 chr6 37770372 37770427 -144644815 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 884 312 64 17 chr6 37772439 37773019 -144642223 - L1MEc LINE L1 -4155 2241 1635 331 308 45 68 chr6 37773042 37773263 -144641979 - L1ME1 LINE L1 0 6166 5951 1694 266 59 38 chr6 37773328 37773991 -144641251 - L1ME1 LINE L1 -112 6448 5772 238 282 70 28 chr6 37774012 37774154 -144641088 - L1ME1 LINE L1 -1843 4697 4550 762 171 49 0 chr6 37774162 37774285 -144640957 - FLAM_C SINE Alu -4 129 1 5915 90 31 1 chr6 37774381 37775218 -144640024 + L1PA8A LINE L1 5267 6128 -3 3468 76 0 34 chr6 37775246 37775744 -144639498 + L1PA13 LINE L1 5683 6163 0 328 247 47 35 chr6 37775754 37775924 -144639318 - L1ME1 LINE L1 -3898 2642 2471 883 301 52 35 chr6 37775937 37776459 -144638783 + L1MEc LINE L1 1515 2045 -4351 384 162 0 0 chr6 37776468 37776536 -144638706 + L1P LINE L1 3148 3215 -2931 1270 224 6 32 chr6 37776823 37777135 -144638107 + AluJo SINE Alu 1 304 -8 21 0 0 0 chr6 37777161 37777182 -144638060 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr6 37777353 37777385 -144637857 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 436 246 160 37 chr6 37777420 37777607 -144637635 - HAL1 LINE L1 -2 2505 2296 664 247 185 15 chr6 37777621 37778010 -144637232 - HAL1 LINE L1 -17 2490 2036 600 213 8 8 chr6 37778106 37778228 -144637014 - FLAM_A SINE Alu -11 122 1 986 217 49 4 chr6 37778283 37778527 -144636715 - HAL1 LINE L1 -723 1784 1530 1514 166 53 25 chr6 37778530 37778813 -144636429 - AluJb SINE Alu -21 291 1 402 250 164 0 chr6 37778893 37779021 -144636221 + L2 LINE L2 2499 2647 -667 1854 116 14 3 chr6 37779105 37779389 -144635853 + AluSq SINE Alu 11 297 -16 389 340 58 0 chr6 37779780 37779968 -144635274 - L1ME LINE L1 -398 5772 5574 805 236 39 63 chr6 37781801 37782212 -144633030 - L1MC5 LINE L1 -476 7485 7085 440 263 130 31 chr6 37782239 37782743 -144632499 + L1ME3A LINE L1 5596 6161 -9 799 268 101 22 chr6 37783029 37783395 -144631847 + ERVL LTR ERVL 3880 4274 -1490 4457 196 16 46 chr6 37783704 37784036 -144631206 + L1P LINE L1 3656 3997 -2149 807 112 0 0 chr6 37784036 37784143 -144631099 + U6 snRNA snRNA 1 107 0 4457 196 16 46 chr6 37784143 37784844 -144630398 + L1P LINE L1 3997 4657 -1489 29 0 0 0 chr6 37784860 37784889 -144630353 + AT_rich Low_complexity Low_complexity 1 29 0 31 82 0 0 chr6 37785551 37785624 -144629618 + AT_rich Low_complexity Low_complexity 1 73 0 1303 140 19 1 chr6 37785624 37785904 -144629338 + L1P LINE L1 4643 4938 -1208 * 3548 241 40 25 chr6 37785886 37787022 -144628220 + L1M4c LINE L1 742 1895 -4489 2173 183 19 19 chr6 37787022 37787454 -144627788 + L1MB5 LINE L1 5743 6174 0 7703 64 32 4 chr6 37787575 37788555 -144626687 - LTR13 LTR ERVK 0 1007 1 203 261 0 0 chr6 37789171 37789217 -144626025 + (CATA)n Simple_repeat Simple_repeat 2 47 0 960 196 0 0 chr6 37789435 37789593 -144625649 - FAM SINE Alu -17 158 1 21 57 0 0 chr6 37789623 37789658 -144625584 + AT_rich Low_complexity Low_complexity 1 35 0 506 307 109 51 chr6 37789813 37790227 -144625015 - L1ME4a LINE L1 -130 5991 5554 1828 277 17 8 chr6 37790229 37791018 -144624224 - ERVL-C1 LTR ERVL -4812 952 28 317 254 68 34 chr6 37791409 37791527 -144623715 + MER58B DNA MER1_type 220 341 0 487 172 40 30 chr6 37792096 37792195 -144623047 + MIR SINE MIR 40 139 -123 287 67 44 0 chr6 37793521 37793566 -144621676 + CT-rich Low_complexity Low_complexity 2 48 0 31 44 0 0 chr6 37794920 37794965 -144620277 + AT_rich Low_complexity Low_complexity 1 45 0 259 125 0 0 chr6 37795447 37795487 -144619755 - ERVL-C1 LTR ERVL -5614 40 1 1267 219 52 7 chr6 37795489 37795527 -144619715 - MLT2C1 LTR ERVL -2 395 360 414 0 0 0 chr6 37795527 37795573 -144619669 + (TG)n Simple_repeat Simple_repeat 2 47 0 1267 219 52 7 chr6 37795573 37795803 -144619439 - MLT2C1 LTR ERVL -37 360 115 2275 213 73 28 chr6 37796721 37797299 -144617943 - MLT1E3 LTR MaLR 0 624 21 573 269 7 14 chr6 37797525 37797666 -144617576 - MLT1F1 LTR MaLR -8 559 420 * 586 340 32 3 chr6 37797657 37797966 -144617276 - LTR16B LTR ERVL -52 412 95 1323 319 53 36 chr6 37798006 37799039 -144616203 - ERVL LTR ERVL -433 5221 4171 1902 319 74 49 chr6 37799279 37800638 -144614604 - ERVL LTR ERVL -2238 3526 2134 997 314 41 7 chr6 37800665 37801079 -144614163 - ERVL LTR ERVL -2966 2030 1603 351 329 132 8 chr6 37801480 37801836 -144613406 - L1ME3A LINE L1 -211 5951 5552 458 253 207 6 chr6 37801874 37802048 -144613194 + L2 LINE L2 2042 2250 -1064 535 227 61 119 chr6 37802081 37802359 -144612883 + L1MC4a LINE L1 5513 5774 -2034 283 254 42 0 chr6 37802375 37802446 -144612796 + 7SLRNA srpRNA srpRNA 234 307 -13 311 307 18 37 chr6 37802540 37802703 -144612539 + L1MC4a LINE L1 5876 6035 -1773 24 32 0 0 chr6 37802865 37802896 -144612346 + AT_rich Low_complexity Low_complexity 1 31 0 579 170 38 0 chr6 37803650 37803756 -144611486 + MER5A DNA MER1_type 3 112 -77 741 41 0 0 chr6 37803798 37803895 -144611347 + (TC)n Simple_repeat Simple_repeat 2 98 0 4658 70 0 0 chr6 37804210 37804779 -144610463 - MER61E LTR ERV1 0 569 1 321 283 44 88 chr6 37804779 37804938 -144610304 + L2 LINE L2 3162 3313 0 2117 112 7 3 chr6 37805931 37806234 -144609008 - AluSq SINE Alu -9 304 1 21 36 0 0 chr6 37806249 37806277 -144608965 + AT_rich Low_complexity Low_complexity 1 28 0 331 251 30 90 chr6 37806683 37806787 -144608455 - L1ME LINE L1 -412 5709 5617 2236 98 0 0 chr6 37806787 37807082 -144608160 - AluSg SINE Alu -15 295 1 331 251 30 90 chr6 37807082 37807144 -144608098 - L1ME LINE L1 -504 5617 5553 2432 71 0 0 chr6 37807144 37807453 -144607789 + AluY SINE Alu 1 309 -2 477 302 91 48 chr6 37807476 37808205 -144607037 - L2 LINE L2 -3 3310 2514 1362 172 29 49 chr6 37809251 37809403 -144605839 + AluJo SINE Alu 1 145 -167 435 19 0 0 chr6 37809403 37809455 -144605787 + (CA)n Simple_repeat Simple_repeat 2 53 0 1362 172 29 49 chr6 37809455 37809610 -144605632 + AluJo SINE Alu 145 302 -10 2470 172 114 53 chr6 37810291 37810976 -144604266 - LTR8A LTR ERV1 0 727 1 24 0 0 0 chr6 37811557 37811581 -144603661 + AT_rich Low_complexity Low_complexity 1 24 0 833 203 0 0 chr6 37811581 37811739 -144603503 - FRAM SINE Alu -8 168 11 1944 174 126 20 chr6 37811788 37812248 -144602994 + LTR22 LTR ERVK 1 509 0 1840 126 0 0 chr6 37812388 37812649 -144602593 - AluSq SINE Alu -52 261 1 405 331 0 0 chr6 37812763 37812899 -144602343 + L1ME1 LINE L1 6027 6162 -4 400 244 52 113 chr6 37812908 37813138 -144602104 + L1MC4 LINE L1 7762 7977 -65 204 293 9 38 chr6 37813173 37813185 -144602057 + CT-rich Low_complexity Low_complexity 5 16 -91 2514 49 0 0 chr6 37813185 37813492 -144601750 + AluY SINE Alu 1 307 -4 204 293 9 38 chr6 37813492 37813585 -144601657 + CT-rich Low_complexity Low_complexity 16 107 0 2126 73 7 3 chr6 37814284 37814571 -144600671 + AluSp SINE Alu 1 288 -25 1091 146 6 6 chr6 37815446 37815611 -144599631 + FRAM SINE Alu 1 164 -12 602 200 50 61 chr6 37815665 37815845 -144599397 - MER5B DNA MER1_type 0 178 1 537 178 9 37 chr6 37815930 37816037 -144599205 - L1MB7 LINE L1 -17 6167 6064 222 150 0 0 chr6 37816047 37816087 -144599155 + (T)n Simple_repeat Simple_repeat 1 40 0 760 61 31 0 chr6 37816087 37816185 -144599057 - HY3 scRNA scRNA 0 101 1 9988 142 24 16 chr6 37819348 37821168 -144594074 - L1MA3 LINE L1 0 6305 4454 2255 116 3 0 chr6 37821168 37821469 -144593773 - AluSp SINE Alu -11 302 1 9988 142 24 16 chr6 37821469 37822381 -144592861 - L1MA3 LINE L1 -1851 4454 3551 2156 171 144 61 chr6 37822375 37822659 -144592583 - L1MB3 LINE L1 -1 6179 5920 * 2288 104 0 3 chr6 37822659 37822957 -144592285 + AluSq SINE Alu 5 301 -12 2156 171 144 61 chr6 37822957 37823244 -144591998 - L1MB3 LINE L1 -260 5920 5658 231 88 0 0 chr6 37823244 37823278 -144591964 + (TG)n Simple_repeat Simple_repeat 1 34 0 2156 171 144 61 chr6 37823278 37823435 -144591807 - L1MB3 LINE L1 -522 5658 5317 956 244 52 32 chr6 37823448 37823796 -144591446 - L1MB3 LINE L1 -893 5253 4899 373 280 137 11 chr6 37829061 37829243 -144585999 + MIR SINE MIR 19 223 -39 22 0 0 0 chr6 37829277 37829299 -144585943 + AT_rich Low_complexity Low_complexity 1 22 0 2497 67 3 3 chr6 37829311 37829609 -144585633 + AluSc SINE Alu 1 298 -11 2066 135 0 0 chr6 37829609 37829889 -144585353 - AluSx SINE Alu -31 281 1 222 105 0 0 chr6 37829889 37829927 -144585315 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 28 29 0 0 chr6 37829945 37829980 -144585262 + AT_rich Low_complexity Low_complexity 1 35 0 820 283 113 38 chr6 37831097 37831591 -144583651 - HAL1 LINE L1 -5 2502 2046 2180 108 0 3 chr6 37831591 37831878 -144583364 - AluSc SINE Alu -23 286 1 2333 95 10 0 chr6 37831878 37832174 -144583068 - AluSp SINE Alu -14 299 1 820 283 113 38 chr6 37832174 37832332 -144582910 - HAL1 LINE L1 -460 2047 1800 180 280 67 0 chr6 37832381 37832456 -144582786 - MER5A DNA MER1_type -85 104 25 686 209 0 16 chr6 37832486 37832615 -144582627 - AluJb SINE Alu -30 282 156 1783 204 27 77 chr6 37832680 37832750 -144582492 - L1MB2 LINE L1 -1 6170 6098 691 211 0 0 chr6 37832750 37832883 -144582359 + FLAM_C SINE Alu 1 133 0 1783 204 27 77 chr6 37832883 37833333 -144581909 - L1MB2 LINE L1 -73 6098 5676 259 133 0 83 chr6 37833701 37833761 -144581481 + MLT2B3 LTR ERVL 458 546 -8 288 324 74 33 chr6 37833766 37834260 -144580982 - L2 LINE L2 -132 3181 2666 1512 230 27 29 chr6 37834269 37834713 -144580529 - L1MB2 LINE L1 -799 5347 4905 368 176 27 0 chr6 37835640 37835714 -144579528 - MER20 DNA MER1_type -138 81 6 237 284 156 38 chr6 37836122 37836488 -144578754 + L1MC4 LINE L1 7492 7900 -142 215 170 0 19 chr6 37836515 37836568 -144578674 + (CA)n Simple_repeat Simple_repeat 1 52 0 3734 165 23 9 chr6 37836571 37837363 -144577879 - HUERS-P3 LTR ERV1 -8018 901 17 3258 153 16 59 chr6 37837379 37838019 -144577223 - LTR9 LTR ERV1 0 612 1 1018 188 0 6 chr6 37838026 37838202 -144577040 - MER41D LTR ERV1 -336 221 47 1924 148 50 18 chr6 37838212 37838550 -144576692 - L1PB2 LINE L1 -31 6120 5772 407 164 0 0 chr6 37838550 37838623 -144576619 - L1MD2 LINE L1 0 6359 6287 743 174 0 8 chr6 37838623 37838755 -144576487 + AluJo SINE Alu 4 134 -178 1611 197 37 42 chr6 37838755 37839135 -144576107 - L1MD1 LINE L1 -57 6185 5808 4880 193 8 6 chr6 37839144 37840505 -144574737 - L1PA6 LINE L1 -1 6153 4792 1674 216 3 0 chr6 37840504 37840837 -144574405 - L1MB2 LINE L1 -1896 4250 3917 * 2716 94 33 13 chr6 37840850 37841242 -144574000 + MLT2A1 LTR ERVL 1 400 -44 229 55 110 0 chr6 37841242 37841315 -144573927 + (TA)n Simple_repeat Simple_repeat 2 82 0 44 56 0 0 chr6 37841320 37841392 -144573850 + AT_rich Low_complexity Low_complexity 1 72 0 554 91 76 2 chr6 37841419 37841832 -144573410 + (TA)n Simple_repeat Simple_repeat 1 443 0 555 79 83 2 chr6 37841863 37842437 -144572805 + (TA)n Simple_repeat Simple_repeat 1 620 0 201 82 55 27 chr6 37842448 37842521 -144572721 + (TA)n Simple_repeat Simple_repeat 1 75 0 429 90 5 75 chr6 37842532 37842720 -144572522 + (TA)n Simple_repeat Simple_repeat 2 176 0 455 100 11 61 chr6 37842770 37842950 -144572292 + (TA)n Simple_repeat Simple_repeat 1 171 0 277 79 0 63 chr6 37842952 37843015 -144572227 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 619 94 59 12 chr6 37843017 37843761 -144571481 + (TA)n Simple_repeat Simple_repeat 1 778 0 358 91 18 0 chr6 37843761 37843816 -144571426 + MLT2A1 LTR ERVL 389 444 0 43881 74 13 13 chr6 37843816 37849473 -144565769 + HERVL-A1-A1 LTR ERVL 1 5654 0 3005 101 18 40 chr6 37849473 37849927 -144565315 + MLT2A1 LTR ERVL 1 444 0 7756 195 34 9 chr6 37849927 37851714 -144563528 - L1PBa LINE L1 -2234 4628 2793 2092 122 61 19 chr6 37851958 37852318 -144562924 + THE1C LTR MaLR 1 375 0 3842 102 61 88 chr6 37852318 37852992 -144562250 + THE1C-int LTR MaLR 1 656 -924 2414 79 3 0 chr6 37854476 37854767 -144560475 + AluSg SINE Alu 1 292 -18 207 219 0 0 chr6 37854792 37854833 -144560409 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 228 211 42 14 chr6 37854834 37854905 -144560337 + (TCTCTG)n Simple_repeat Simple_repeat 4 76 0 212 175 18 53 chr6 37856265 37856322 -144558920 + GA-rich Low_complexity Low_complexity 1 55 0 234 62 0 0 chr6 37856352 37856384 -144558858 + (TG)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37856978 37857115 -144558127 - L1M1 LINE L1 -671 5632 5498 239 0 32 0 chr6 37857115 37857146 -144558096 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5693 166 18 10 chr6 37857146 37858414 -144556828 - L1M1 LINE L1 -805 5498 4214 2564 168 43 111 chr6 37858417 37859085 -144556157 + MER21B LTR ERV1 218 840 -23 1532 164 8 23 chr6 37859711 37859973 -144555269 - AluJb SINE Alu -54 258 1 1831 181 0 3 chr6 37860174 37860478 -144554764 - AluJb SINE Alu -4 308 6 6347 134 48 57 chr6 37860585 37861152 -144554090 - Tigger3b DNA MER2_type -1797 1231 660 7759 29 6 0 chr6 37861152 37862222 -144553020 - L1PA3 LINE L1 0 6155 5083 6347 134 48 57 chr6 37862222 37862896 -144552346 - Tigger3b DNA MER2_type -2368 660 2 325 409 25 9 chr6 37863105 37863425 -144551817 + L1MEc LINE L1 801 1125 -5997 298 274 24 40 chr6 37863833 37863957 -144551285 + L1MEc LINE L1 1370 1491 -4932 * 345 302 67 38 chr6 37863943 37864287 -144550955 + L1M4 LINE L1 3211 3564 -2582 1628 138 11 0 chr6 37864305 37864565 -144550677 + MER2 DNA MER2_type 1 263 -82 2504 121 14 3 chr6 37864676 37865047 -144550195 + THE1C LTR MaLR 1 375 0 2319 263 90 25 chr6 37865057 37866189 -144549053 + L1M4 LINE L1 3593 4798 -1348 472 170 16 0 chr6 37866204 37866313 -144548929 - L1 LINE L1 -1079 5303 5190 808 226 30 0 chr6 37866314 37866478 -144548764 - FRAM SINE Alu -7 169 1 303 250 11 11 chr6 37866483 37866575 -144548667 - L1 LINE L1 -1191 5191 5100 * 1862 238 63 53 chr6 37866569 37866754 -144548488 - L1M4c LINE L1 -4573 2073 1891 761 138 0 14 chr6 37866754 37866892 -144548350 - L1MB2 LINE L1 -1 6170 6035 1862 238 63 53 chr6 37866892 37867404 -144547838 - L1M4c LINE L1 -4755 1891 1369 851 209 17 12 chr6 37867393 37867644 -144547598 - L1M4c LINE L1 -4719 1926 1303 * 6514 63 10 86 chr6 37867647 37868680 -144546562 - SVA Other Other 0 1386 433 986 96 20 170 chr6 37868697 37870689 -144544553 - SVA Other Other -629 866 433 319 284 167 10 chr6 37870746 37870848 -144544394 + L1MC4 LINE L1 6585 6702 -1340 401 305 0 0 chr6 37870851 37870946 -144544296 - L1MC4 LINE L1 -1339 6703 6609 2250 273 56 68 chr6 37870953 37872189 -144543053 - L1M4c LINE L1 -5320 1222 2 447 274 61 79 chr6 37872188 37872407 -144542835 - L1MEc LINE L1 -4535 1861 1653 * 472 155 52 0 chr6 37872407 37872504 -144542738 + L1MA7 LINE L1 6187 6288 -3 447 274 61 79 chr6 37872504 37872725 -144542517 - L1MEc LINE L1 -4743 1653 1429 817 256 68 8 chr6 37872884 37873134 -144542108 + MLT2D LTR ERVL 1 265 -149 1523 197 6 60 chr6 37873135 37873486 -144541756 + MER21B-int LTR ERV1 2341 2672 -1519 876 120 21 0 chr6 37873486 37873628 -144541614 + MSTA LTR MaLR 1 145 -283 383 219 0 0 chr6 37873628 37873701 -144541541 + MER21B-int LTR ERV1 2667 2739 -1452 363 295 70 0 chr6 37873707 37873836 -144541406 + FRAM SINE Alu 16 153 -13 492 194 22 72 chr6 37873846 37873985 -144541257 + MER21B-int LTR ERV1 2742 2873 -1318 2073 149 0 0 chr6 37873990 37874292 -144540950 + AluSx SINE Alu 1 302 -10 2703 237 62 43 chr6 37874343 37874684 -144540558 + MER21B-int LTR ERV1 3068 3401 -790 198 0 0 0 chr6 37874684 37874706 -144540536 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2703 237 62 43 chr6 37874706 37875319 -144539923 + MER21B-int LTR ERV1 3401 4040 -151 1506 235 0 9 chr6 37875416 37875731 -144539511 + AluJo SINE Alu 1 312 0 1256 261 11 25 chr6 37875767 37876123 -144539119 + MER21B LTR ERV1 2 352 -511 317 183 24 24 chr6 37876642 37876724 -144538518 + MER4C LTR ERV1 65 146 -319 494 337 34 4 chr6 37877539 37877803 -144537439 - LTR16B LTR ERVL -131 333 62 1459 342 40 35 chr6 37877811 37879030 -144536212 - ERVL LTR ERVL -504 5260 3693 * 1660 303 57 38 chr6 37879029 37879873 -144535369 - ERVL LTR ERVL -2240 3524 2665 253 175 0 0 chr6 37879940 37879980 -144535262 - Alu SINE Alu -19 281 242 * 255 125 0 25 chr6 37879971 37880011 -144535231 - AluSg/x SINE Alu -136 164 126 2168 109 6 13 chr6 37880011 37880324 -144534918 - AluSp SINE Alu 0 313 3 1935 293 52 47 chr6 37880335 37881308 -144533934 - ERVL LTR ERVL -2430 2566 1589 1167 321 47 20 chr6 37881364 37881806 -144533436 - ERVL LTR ERVL -3534 1462 998 1943 137 90 29 chr6 37881806 37882149 -144533093 + THE1B LTR MaLR 1 364 0 1167 321 47 20 chr6 37882149 37882300 -144532942 - ERVL LTR ERVL -3998 998 853 295 321 94 54 chr6 37882448 37882725 -144532517 - ERVL LTR ERVL -4444 552 265 636 285 72 93 chr6 37882978 37883141 -144532101 - LTR16B LTR ERVL 0 464 299 1727 134 0 0 chr6 37883141 37883380 -144531862 - AluSx SINE Alu -73 239 1 636 285 72 93 chr6 37883380 37883690 -144531552 - LTR16B LTR ERVL -165 299 1 2077 252 68 45 chr6 37883690 37884459 -144530783 - L2 LINE L2 -1658 1656 871 270 233 122 0 chr6 37884531 37884621 -144530621 - L2 LINE L2 -2411 903 803 229 228 63 0 chr6 37884723 37884802 -144530440 - L2 LINE L2 -2513 801 718 1598 265 72 19 chr6 37884831 37885415 -144529827 - MLT1E2 LTR MaLR -11 615 1 1468 282 105 14 chr6 37885422 37886043 -144529199 - L2 LINE L2 -2620 694 18 1913 131 84 6 chr6 37887270 37887613 -144527629 - Tigger1 DNA MER2_type 0 2418 2049 2242 169 10 5 chr6 37887619 37888016 -144527226 - Tigger1 DNA MER2_type -1965 453 55 215 79 26 0 chr6 37888017 37888055 -144527187 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 231 272 99 0 chr6 37888298 37888379 -144526863 + MIR SINE MIR 112 200 -62 976 143 7 60 chr6 37888652 37888873 -144526369 - MLT2A2 LTR ERVL 0 453 293 267 319 0 0 chr6 37889299 37889393 -144525849 + (TG)n Simple_repeat Simple_repeat 1 94 0 2609 68 48 0 chr6 37889675 37890011 -144525231 - THE1A LTR MaLR -3 352 1 25 0 0 0 chr6 37890444 37890469 -144524773 + AT_rich Low_complexity Low_complexity 1 25 0 948 300 40 9 chr6 37890667 37891087 -144524155 + LTR33 LTR ERVL 10 442 -79 805 173 0 0 chr6 37891206 37891333 -144523909 - FLAM_C SINE Alu -16 127 1 2571 63 0 0 chr6 37895781 37896081 -144519161 - AluY SINE Alu -11 300 1 841 203 17 6 chr6 37896539 37896716 -144518526 - MLT1B LTR MaLR 0 390 212 2521 70 0 16 chr6 37896881 37897195 -144518047 + AluY SINE Alu 1 309 -2 2773 149 2 4 chr6 37897532 37897989 -144517253 - L1MA4A LINE L1 -9 6294 5839 218 93 56 37 chr6 37898186 37898240 -144517002 + (TACTG)n Simple_repeat Simple_repeat 1 55 0 2380 54 30 3 chr6 37898299 37898596 -144516646 - AluY SINE Alu -4 307 3 352 332 121 3 chr6 37898618 37898976 -144516266 - L1ME3 LINE L1 -211 5951 5552 371 290 252 5 chr6 37898976 37899190 -144516052 + L2 LINE L2 1984 2250 -1064 491 280 76 9 chr6 37899223 37899434 -144515808 + L1MC4a LINE L1 5513 5737 -2071 378 234 71 59 chr6 37899649 37899888 -144515354 + L1MC4a LINE L1 5812 6053 -1755 37 23 0 0 chr6 37900028 37900072 -144515170 + AT_rich Low_complexity Low_complexity 1 44 0 585 170 38 0 chr6 37900820 37900926 -144514316 + MER5A DNA MER1_type 3 112 -77 297 0 0 0 chr6 37900968 37901001 -144514241 + (TC)n Simple_repeat Simple_repeat 2 34 0 4617 77 0 0 chr6 37901315 37901884 -144513358 - MER61E LTR ERV1 0 569 1 314 342 63 32 chr6 37901885 37902043 -144513199 + L2 LINE L2 3110 3272 0 1454 173 38 63 chr6 37904087 37904243 -144510999 + AluJo SINE Alu 1 146 -166 270 0 0 0 chr6 37904243 37904273 -144510969 + (CA)n Simple_repeat Simple_repeat 2 31 0 1454 173 38 63 chr6 37904273 37904434 -144510808 + AluJo SINE Alu 146 310 -2 2362 175 116 64 chr6 37905123 37905467 -144509775 - LTR8A LTR ERV1 0 727 402 2643 48 0 3 chr6 37905467 37905779 -144509463 + AluY SINE Alu 1 311 0 2362 175 116 64 chr6 37905779 37906125 -144509117 - LTR8A LTR ERV1 -325 402 1 914 192 0 0 chr6 37906726 37906882 -144508360 - FRAM SINE Alu -10 166 11 22 0 0 0 chr6 37907019 37907041 -144508201 + AT_rich Low_complexity Low_complexity 1 22 0 2113 88 0 0 chr6 37907066 37907326 -144507916 - AluSq SINE Alu -53 260 1 422 316 0 0 chr6 37907440 37907573 -144507669 + L1ME1 LINE L1 6027 6159 -7 358 242 33 121 chr6 37907597 37907812 -144507430 + L1MC4 LINE L1 7779 7974 -68 205 329 0 24 chr6 37907851 37907933 -144507309 + CT-rich Low_complexity Low_complexity 2 81 0 2451 57 13 0 chr6 37908630 37908931 -144506311 + AluSp SINE Alu 1 305 -8 196 235 25 74 chr6 37909429 37909510 -144505732 + MIR SINE MIR 22 98 -110 222 326 0 0 chr6 37909749 37909798 -144505444 - L2 LINE L2 -82 3190 3142 973 161 11 33 chr6 37909822 37910002 -144505240 + FRAM SINE Alu 1 176 0 739 251 29 11 chr6 37910061 37910236 -144505006 - MER5B DNA MER1_type 0 178 1 507 161 9 54 chr6 37910316 37910428 -144504814 - L1MB7 LINE L1 -17 6167 6061 2430 81 3 3 chr6 37910437 37910746 -144504496 - AluY SINE Alu 0 311 3 792 79 0 0 chr6 37910771 37910872 -144504370 - HY3 scRNA scRNA 0 101 1 2657 36 13 0 chr6 37912526 37912831 -144502411 - AluY SINE Alu -2 309 1 8525 138 22 12 chr6 37914365 37916119 -144499123 - L1MA3 LINE L1 0 6305 4516 2311 104 3 3 chr6 37916119 37916418 -144498824 + AluSp SINE Alu 1 299 -14 8525 138 22 12 chr6 37916418 37917394 -144497848 - L1MA3 LINE L1 -1789 4516 3551 3265 200 61 56 chr6 37917388 37918015 -144497227 - L1MB2 LINE L1 -4 6167 5544 * 417 20 0 0 chr6 37918015 37918065 -144497177 + (TG)n Simple_repeat Simple_repeat 1 50 0 3265 200 61 56 chr6 37918065 37918326 -144496916 - L1MB2 LINE L1 -627 5544 5286 2505 90 0 0 chr6 37918326 37918637 -144496605 - AluY SINE Alu 0 311 1 3265 200 61 56 chr6 37918637 37919005 -144496237 - L1MB2 LINE L1 -885 5286 4899 2307 141 25 13 chr6 37924164 37924561 -144490681 + LTR3 LTR ERVK 22 423 -9 2154 145 0 0 chr6 37924611 37924922 -144490320 - AluSx SINE Alu -1 311 1 195 114 0 0 chr6 37924922 37924957 -144490285 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 23 0 0 0 chr6 37924985 37925008 -144490234 + AT_rich Low_complexity Low_complexity 1 23 0 203 0 0 36 chr6 37925905 37925933 -144489309 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2583 74 0 3 chr6 37926133 37926445 -144488797 - AluY SINE Alu 0 311 1 689 276 22 65 chr6 37926484 37926839 -144488403 - L1MC5 LINE L1 -519 7442 7103 2294 103 3 0 chr6 37926840 37927142 -144488100 + AluSp SINE Alu 1 303 -10 393 282 110 38 chr6 37927257 37927466 -144487776 + L1ME3A LINE L1 5932 6155 -15 519 323 84 8 chr6 37927764 37928133 -144487109 + MERVL LTR ERVL 3836 4232 -1253 508 319 73 67 chr6 37928231 37928695 -144486547 + L1M4 LINE L1 3427 3893 -2253 2955 124 8 33 chr6 37928780 37928874 -144486368 + L1PA15 LINE L1 5694 5789 -376 2651 64 0 0 chr6 37928874 37929185 -144486057 + AluY SINE Alu 1 311 0 2955 124 8 33 chr6 37929185 37929573 -144485669 + L1PA15 LINE L1 5789 6164 -1 483 35 0 0 chr6 37929612 37929670 -144485572 + AluY SINE Alu 2 59 -259 350 216 91 0 chr6 37929670 37929758 -144485484 - L2 LINE L2 -259 3054 2959 2446 99 0 3 chr6 37931032 37931345 -144483897 - AluSx SINE Alu 0 312 1 1997 176 185 62 chr6 37931442 37931851 -144483391 + L1MD3 LINE L1 6698 7055 -940 366 226 22 12 chr6 37931851 37931943 -144483299 + MLT1F1 LTR MaLR 39 130 -443 1997 176 185 62 chr6 37931943 37932424 -144482818 + L1MD3 LINE L1 7055 7970 -25 2159 90 0 0 chr6 37932438 37932715 -144482527 - AluSx SINE Alu 0 312 36 656 161 116 9 chr6 37932761 37932873 -144482369 + FLAM_C SINE Alu 2 125 -8 409 264 50 0 chr6 37932880 37933039 -144482203 + L1M4 LINE L1 3440 3606 -2540 2318 79 7 3 chr6 37933257 37933549 -144481693 + AluSp SINE Alu 1 293 -20 2422 82 3 3 chr6 37933737 37934040 -144481202 + AluSx SINE Alu 3 305 -7 4906 204 35 47 chr6 37934459 37935229 -144480013 + L1M4 LINE L1 3613 4391 -1755 2399 92 0 0 chr6 37935229 37935522 -144479720 - AluSg SINE Alu -17 293 1 4906 204 35 47 chr6 37935522 37935927 -144479315 + L1M4 LINE L1 4391 4772 -1374 3829 124 35 52 chr6 37935927 37936094 -144479148 + L1MA8 LINE L1 5553 5721 -570 620 189 90 0 chr6 37936094 37936216 -144479026 - FLAM_A SINE Alu 0 133 1 3829 124 35 52 chr6 37936216 37936796 -144478446 + L1MA8 LINE L1 5721 6287 -4 4906 204 35 47 chr6 37936796 37936975 -144478267 + L1M4 LINE L1 4772 4952 -1194 181 390 13 0 chr6 37936980 37937057 -144478185 + MIR SINE MIR 159 236 -26 818 183 78 90 chr6 37937406 37937456 -144477786 - MSTD LTR MaLR 0 396 347 1927 148 7 3 chr6 37937456 37937754 -144477488 - AluJb SINE Alu -12 300 2 818 183 78 90 chr6 37937754 37937968 -144477274 - MSTD LTR MaLR -49 347 82 2499 90 0 0 chr6 37937968 37938269 -144476973 + AluSq SINE Alu 1 301 -12 818 183 78 90 chr6 37938269 37938331 -144476911 - MSTD LTR MaLR -314 82 21 2507 74 0 10 chr6 37938430 37938742 -144476500 - AluSc SINE Alu 0 309 1 1911 154 0 0 chr6 37939066 37939346 -144475896 + AluSx SINE Alu 1 280 -32 2442 92 0 10 chr6 37939377 37939691 -144475551 - AluSx SINE Alu -1 311 1 1542 163 119 41 chr6 37940545 37940710 -144474532 - Tigger1 DNA MER2_type 0 2418 2267 2182 108 4 0 chr6 37940710 37940988 -144474254 - AluSx SINE Alu -33 279 1 1542 163 119 41 chr6 37940988 37941184 -144474058 - Tigger1 DNA MER2_type -151 2267 2029 * 1720 188 51 30 chr6 37941179 37941572 -144473670 - Tigger1 DNA MER2_type -2017 401 1 2601 50 0 0 chr6 37941825 37942124 -144473118 + AluY SINE Alu 2 300 -11 226 203 63 13 chr6 37942918 37942997 -144472245 + (CTGGGG)n Simple_repeat Simple_repeat 2 84 0 * 241 220 0 0 chr6 37942952 37943002 -144472240 + G-rich Low_complexity Low_complexity 3 52 0 1752 142 0 51 chr6 37945900 37946195 -144469047 - AluJo SINE Alu -24 288 9 1788 181 0 3 chr6 37946323 37946611 -144468631 - AluJo SINE Alu -25 287 1 206 271 0 0 chr6 37946985 37947033 -144468209 + G-rich Low_complexity Low_complexity 1 48 0 1136 145 0 0 chr6 37947709 37947861 -144467381 - FAM SINE Alu -22 163 12 1797 161 41 3 chr6 37948077 37948369 -144466873 - AluJb SINE Alu -9 303 1 25 51 0 0 chr6 37948582 37948621 -144466621 + AT_rich Low_complexity Low_complexity 1 39 0 229 308 0 0 chr6 37949366 37949431 -144465811 + GA-rich Low_complexity Low_complexity 3 67 0 224 261 197 92 chr6 37950847 37950989 -144464253 - MIR3 SINE MIR -14 194 38 1074 145 73 0 chr6 37951033 37951212 -144464030 + AluSp SINE Alu 121 312 -1 1665 182 10 10 chr6 37951215 37951522 -144463720 + AluSx SINE Alu 1 307 -5 251 329 88 27 chr6 37951621 37951825 -144463417 + L1MC4a LINE L1 7097 7326 -482 2165 113 10 10 chr6 37951825 37952135 -144463107 + AluSx SINE Alu 1 310 -2 251 329 88 27 chr6 37952135 37952225 -144463017 + L1MC4a LINE L1 7326 7409 -399 1983 164 0 3 chr6 37952228 37952521 -144462721 - AluSx SINE Alu -14 298 7 341 143 0 0 chr6 37954073 37954129 -144461113 - AluJ SINE Alu -36 266 211 890 149 0 27 chr6 37954130 37954278 -144460964 - AluJ SINE Alu -168 144 1 2010 83 79 4 chr6 37956754 37957031 -144458211 - AluSx SINE Alu -14 298 1 240 341 167 0 chr6 37957210 37957336 -144457906 - MIR SINE MIR -64 198 52 526 256 96 45 chr6 37957507 37957667 -144457575 - L2 LINE L2 -1 3312 3139 1530 169 68 0 chr6 37957667 37957933 -144457309 + AluJo SINE Alu 5 288 -24 526 256 96 45 chr6 37957933 37957971 -144457271 - L2 LINE L2 -174 3139 3104 2316 116 0 0 chr6 37958176 37958477 -144456765 + AluSp SINE Alu 1 301 -12 596 265 51 25 chr6 37958976 37959172 -144456070 - MIR SINE MIR -13 249 49 425 216 128 88 chr6 37962784 37962932 -144452310 + MIR SINE MIR 7 160 -102 * 805 249 95 5 chr6 37962927 37963148 -144452094 - MIR SINE MIR -21 241 1 250 232 122 24 chr6 37963213 37963295 -144451947 + MIR SINE MIR 173 262 0 2154 138 10 0 chr6 37963310 37963615 -144451627 - AluSq SINE Alu -5 308 1 918 250 50 28 chr6 37963637 37963957 -144451285 + MER46C DNA MER2_type 1 327 -11 2223 119 0 3 chr6 37963983 37964278 -144450964 + AluSg SINE Alu 1 294 -16 2318 94 13 0 chr6 37964741 37965049 -144450193 - AluSp SINE Alu -1 312 1 1813 175 7 3 chr6 37965081 37965389 -144449853 - AluJo SINE Alu -3 309 1 324 255 30 62 chr6 37965400 37965579 -144449663 - MIR3 SINE MIR -68 140 7 2135 109 0 81 chr6 37965660 37965847 -144449395 - AluSx SINE Alu -14 298 146 2243 118 0 10 chr6 37965847 37966160 -144449082 - AluSx SINE Alu -2 310 1 2135 109 0 81 chr6 37966160 37966292 -144448950 - AluSx SINE Alu -166 146 5 2117 78 0 57 chr6 37966308 37966645 -144448597 - AluSc SINE Alu 0 320 1 2461 78 0 31 chr6 37966740 37967061 -144448181 - AluY SINE Alu 0 311 1 2087 111 30 20 chr6 37967097 37967395 -144447847 - AluSx SINE Alu -11 301 1 2293 101 0 7 chr6 37967711 37968017 -144447225 - AluSg1 SINE Alu -5 304 1 1764 145 13 33 chr6 37968181 37968485 -144446757 + AluJo SINE Alu 1 298 -14 275 286 198 37 chr6 37968630 37968847 -144446395 + L1MC/D LINE L1 5409 5660 -2148 2512 80 0 6 chr6 37969284 37969597 -144445645 - AluSx SINE Alu -1 311 1 1895 84 3 131 chr6 37969672 37970016 -144445226 - AluSg SINE Alu 0 300 1 2527 63 0 3 chr6 37971163 37971463 -144443779 - AluY SINE Alu -12 299 1 2032 112 16 36 chr6 37975457 37975760 -144439482 + AluSx SINE Alu 1 297 -15 298 254 172 0 chr6 37975760 37975882 -144439360 - L2 LINE L2 -21 3292 3150 232 304 228 11 chr6 37975928 37976376 -144438866 - L2 LINE L2 -975 2339 1795 37 23 0 0 chr6 37976950 37976994 -144438248 + AT_rich Low_complexity Low_complexity 1 44 0 427 230 71 59 chr6 37977134 37977373 -144437869 - L1MC4a LINE L1 -1755 6053 5812 271 289 106 24 chr6 37977588 37977796 -144437446 - L1MC4a LINE L1 -2071 5737 5513 23 0 0 0 chr6 37977934 37977957 -144437285 + AT_rich Low_complexity Low_complexity 1 23 0 238 176 0 39 chr6 37978158 37978209 -144437033 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 4314 59 52 2 chr6 37978824 37979368 -144435874 + LTR13 LTR ERVK 1 571 -436 339 243 79 34 chr6 37979468 37979645 -144435597 - L1MC4a LINE L1 -1078 5068 4884 245 315 135 0 chr6 37979810 37979921 -144435321 + L2 LINE L2 3186 3311 -2 316 336 86 10 chr6 37979972 37980493 -144434749 - L1ME4a LINE L1 -183 5938 5378 908 84 8 0 chr6 37980506 37980637 -144434605 + (TTC)n Simple_repeat Simple_repeat 1 132 0 541 169 0 0 chr6 37980637 37980720 -144434522 - AluJ SINE Alu -33 279 197 806 165 0 0 chr6 37980734 37980861 -144434381 - AluJ SINE Alu -175 127 1 303 347 53 15 chr6 37981099 37981364 -144433878 - L1ME4a LINE L1 -2075 4071 3797 915 129 0 7 chr6 37981508 37981655 -144433587 - L1MA6 LINE L1 -6 6294 6149 273 338 58 17 chr6 37981766 37982006 -144433236 + L1M4 LINE L1 3808 4057 -2089 207 170 0 38 chr6 37982222 37982275 -144432967 + T-rich Low_complexity Low_complexity 5 55 0 281 268 27 27 chr6 37982306 37982418 -144432824 - L1ME4a LINE L1 -3078 3068 2957 330 219 21 0 chr6 37982810 37982906 -144432336 - L1MA6 LINE L1 -242 6058 5961 1360 186 18 46 chr6 37982910 37983190 -144432052 - MSTD LTR MaLR -124 272 1 1313 292 31 21 chr6 37983202 37983627 -144431615 - LTR16A LTR ERVL -4 446 18 586 306 58 5 chr6 37983628 37983834 -144431408 - MIR SINE MIR -12 250 34 364 308 62 41 chr6 38084374 38084569 -144330673 - MIR SINE MIR -10 252 54 26 30 0 0 chr6 38085664 38085697 -144329545 + GC_rich Low_complexity Low_complexity 1 33 0 184 211 26 0 chr6 38085986 38086024 -144329218 + MIR SINE MIR 109 147 -61 2085 110 7 19 chr6 38086028 38086141 -144329101 + AluSx SINE Alu 1 114 -198 1856 92 4 0 chr6 38086141 38086391 -144328851 + AluSg1 SINE Alu 16 266 -43 2085 110 7 19 chr6 38086391 38086586 -144328656 + AluSx SINE Alu 114 305 -7 1026 95 19 6 chr6 38086586 38086744 -144328498 + AluSg/x SINE Alu 132 291 -19 186 147 0 29 chr6 38086745 38086779 -144328463 + MIR3 SINE MIR 145 177 -31 1696 102 4 4 chr6 38087921 38088165 -144327077 - AluSq SINE Alu -5 308 65 2126 124 10 0 chr6 38088664 38088971 -144326271 - AluSx SINE Alu -2 310 1 522 148 0 0 chr6 38089174 38089255 -144325987 - AluJo SINE Alu -14 298 218 488 181 0 86 chr6 38089252 38089301 -144325941 - AluJo SINE Alu -130 182 130 * 2292 79 0 0 chr6 38089301 38089591 -144325651 - AluY SINE Alu -21 290 1 488 181 0 86 chr6 38089591 38089657 -144325585 - AluJo SINE Alu -182 130 77 612 191 22 52 chr6 38089847 38089983 -144325259 + FLAM_C SINE Alu 1 132 -1 2238 95 0 3 chr6 38089990 38090296 -144324946 + AluSg SINE Alu 1 305 -5 1433 126 5 14 chr6 38090406 38090541 -144324701 + AluSx SINE Alu 1 135 -177 2414 70 3 0 chr6 38090541 38090842 -144324400 + AluY SINE Alu 1 302 -9 1433 126 5 14 chr6 38090842 38090921 -144324321 + AluSx SINE Alu 135 213 -99 25 0 0 0 chr6 38090921 38090946 -144324296 + AT_rich Low_complexity Low_complexity 1 25 0 1090 163 16 0 chr6 38090946 38091130 -144324112 + AluSg/x SINE Alu 118 304 -6 2134 125 0 3 chr6 38091448 38091752 -144323490 + AluSx SINE Alu 1 303 -9 806 160 0 8 chr6 38091801 38091926 -144323316 + AluJo SINE Alu 13 136 -176 2148 129 0 0 chr6 38091935 38092245 -144322997 + AluSg SINE Alu 1 310 0 1972 99 46 30 chr6 38092250 38092553 -144322689 + AluSc SINE Alu 1 308 -1 2069 99 0 7 chr6 38092566 38092876 -144322366 + AluSg SINE Alu 1 308 0 439 169 24 6 chr6 38093182 38093431 -144321811 + AluJo SINE Alu 1 293 -19 2092 125 3 0 chr6 38093519 38093815 -144321427 - AluSx SINE Alu -15 297 1 648 213 0 44 chr6 38093857 38093993 -144321249 + FLAM_C SINE Alu 1 130 -13 2094 137 0 0 chr6 38094016 38094322 -144320920 + AluSg1 SINE Alu 1 306 -3 340 317 112 0 chr6 38094333 38094494 -144320748 + MIR SINE MIR 54 232 -30 828 75 0 0 chr6 38094571 38094678 -144320564 - AluSc SINE Alu -202 107 1 2455 80 0 0 chr6 38094690 38095001 -144320241 - AluY SINE Alu 0 311 1 1712 167 31 14 chr6 38095008 38095295 -144319947 - AluJb SINE Alu -20 292 1 2162 102 7 0 chr6 38095305 38095598 -144319644 - AluSg SINE Alu -15 295 1 898 197 0 0 chr6 38095736 38095888 -144319354 - FRAM SINE Alu -11 155 4 29 0 0 0 chr6 38097171 38097200 -144318042 + AT_rich Low_complexity Low_complexity 1 29 0 2109 113 3 0 chr6 38097238 38097540 -144317702 + AluSx SINE Alu 1 303 -9 1642 125 156 0 chr6 38097541 38097797 -144317445 + AluSq SINE Alu 1 296 -7 785 177 48 7 chr6 38097804 38097951 -144317291 + FRAM SINE Alu 20 172 -4 2171 99 0 0 chr6 38098266 38098550 -144316692 - AluSc SINE Alu -25 284 1 2268 98 10 0 chr6 38098764 38099069 -144316173 + AluSq SINE Alu 1 308 -5 2307 56 0 7 chr6 38099318 38099604 -144315638 + AluY SINE Alu 1 284 -27 405 0 0 0 chr6 38099604 38099649 -144315593 + (CA)n Simple_repeat Simple_repeat 2 46 0 1560 170 7 20 chr6 38102170 38102320 -144312922 - AluJo SINE Alu -16 296 150 1997 76 52 31 chr6 38102320 38102610 -144312632 - AluSx SINE Alu -16 296 1 1560 170 7 20 chr6 38102610 38102759 -144312483 - AluJo SINE Alu -162 150 1 1668 175 88 25 chr6 38102768 38102957 -144312285 - L1MB2 LINE L1 -2 6169 5993 1523 191 10 13 chr6 38102957 38103260 -144311982 - AluJb SINE Alu -10 302 1 1668 175 88 25 chr6 38103260 38103443 -144311799 - L1MB2 LINE L1 -178 5993 5758 2028 129 0 13 chr6 38103443 38103745 -144311497 - AluSx SINE Alu -14 298 1 1668 175 88 25 chr6 38103745 38103851 -144311391 - L1MB2 LINE L1 -413 5758 5660 1555 65 0 56 chr6 38104264 38104495 -144310747 + AluY SINE Alu 1 218 -93 1288 56 6 0 chr6 38104495 38104657 -144310585 + AluY SINE Alu 131 293 -18 310 246 26 26 chr6 38105029 38105143 -144310099 + FLAM_C SINE Alu 16 129 -4 235 319 21 0 chr6 38105177 38105271 -144309971 - L1ME4a LINE L1 -71 6050 5955 1962 69 9 129 chr6 38105290 38105623 -144309619 + AluSg SINE Alu 1 293 -7 206 229 238 9 chr6 38105692 38105797 -144309445 + L2 LINE L2 3182 3310 -3 401 263 132 0 chr6 38105823 38105937 -144309305 + MIR3 SINE MIR 43 171 -37 336 256 150 44 chr6 38106760 38106940 -144308302 + MIR SINE MIR 64 262 0 * 370 328 16 68 chr6 38106882 38107132 -144308110 - MIR SINE MIR -24 238 2 1262 120 0 5 chr6 38107755 38107939 -144307303 - AluSg/x SINE Alu -1 311 129 1314 159 45 0 chr6 38107964 38108184 -144307058 + AluJo SINE Alu 1 230 -82 264 263 179 0 chr6 38108254 38108349 -144306893 - L1ME3A LINE L1 -32 6138 6027 1983 120 10 3 chr6 38110801 38111092 -144304150 - AluSq SINE Alu -17 296 4 708 249 35 0 chr6 38111897 38112066 -144303176 + MER5A DNA MER1_type 15 189 0 216 345 33 72 chr6 38113107 38113319 -144301923 - L2 LINE L2 -1417 1897 1701 2427 86 0 3 chr6 38113319 38113633 -144301609 + AluSq SINE Alu 1 313 0 216 345 33 72 chr6 38113633 38113753 -144301489 - L2 LINE L2 -1613 1701 1578 458 263 66 15 chr6 38113756 38113893 -144301349 - MIR SINE MIR -98 164 21 257 220 0 17 chr6 38113902 38113961 -144301281 + G-rich Low_complexity Low_complexity 4 61 0 380 315 204 0 chr6 38115103 38115265 -144299977 - MER91A DNA MER1_type 0 196 2 874 208 33 6 chr6 38115559 38115742 -144299500 - MER53 DNA DNA -1 188 1 546 221 0 18 chr6 38116579 38116692 -144298550 + MIR SINE MIR 41 151 -111 2319 60 10 3 chr6 38116693 38116991 -144298251 + AluY SINE Alu 1 300 -11 1013 198 12 0 chr6 38117069 38117241 -144298001 + FAM SINE Alu 1 174 -1 581 258 88 88 chr6 38117242 38117358 -144297884 + L1MC5 LINE L1 6616 6731 -1230 1901 79 0 0 chr6 38117358 38117599 -144297643 + AluSg SINE Alu 56 296 -14 581 258 88 88 chr6 38117599 38117913 -144297329 + L1MC5 LINE L1 6730 7046 -915 204 333 35 11 chr6 38118657 38118744 -144296498 + L2 LINE L2 3021 3109 -163 * 258 286 18 45 chr6 38118741 38118853 -144296389 + MIR SINE MIR 10 118 -144 392 338 69 0 chr6 38118918 38119063 -144296179 + L2 LINE L2 3118 3272 0 444 161 0 0 chr6 38120981 38121062 -144294180 + CT-rich Low_complexity Low_complexity 2 82 0 269 280 93 47 chr6 38121258 38121408 -144293834 + L1ME3A LINE L1 5794 5950 -220 245 286 27 54 chr6 38121445 38121592 -144293650 + L1MD3 LINE L1 7416 7558 -437 476 229 115 19 chr6 38121595 38121752 -144293490 + L1MC5 LINE L1 7312 7483 -478 1949 118 31 0 chr6 38121753 38122041 -144293201 - AluSq SINE Alu -14 299 3 678 186 50 7 chr6 38122077 38122217 -144293025 + AluSq/x SINE Alu 2 147 -166 1446 125 13 9 chr6 38122337 38122581 -144292661 + AluSg/x SINE Alu 73 310 0 885 261 77 34 chr6 38122600 38122624 -144292618 + L1MC5 LINE L1 7490 7512 -449 2226 81 7 10 chr6 38122624 38122921 -144292321 - AluSp SINE Alu -17 296 1 885 261 77 34 chr6 38122921 38123313 -144291929 + L1MC5 LINE L1 7512 7924 -37 2078 101 0 17 chr6 38123636 38123933 -144291309 + AluSx SINE Alu 1 292 -20 1516 182 44 51 chr6 38124826 38125006 -144290236 + L1MB3 LINE L1 5654 5834 -349 1385 171 49 31 chr6 38125006 38125292 -144289950 - AluJo SINE Alu -21 291 1 1516 182 44 51 chr6 38125292 38125645 -144289597 + L1MB3 LINE L1 5834 6133 -50 1709 110 0 30 chr6 38125645 38125818 -144289424 - AluSx SINE Alu -9 303 139 2089 105 10 10 chr6 38125818 38126123 -144289119 - AluSq SINE Alu -8 305 1 1709 110 0 30 chr6 38126123 38126213 -144289029 - AluSx SINE Alu -173 139 48 272 85 0 0 chr6 38126316 38126363 -144288879 + Tigger7 DNA MER2_type 2325 2371 -120 1291 152 100 15 chr6 38126424 38126693 -144288549 + LTR23 LTR ERV1 1 292 -145 22 35 0 0 chr6 38126708 38126737 -144288505 + AT_rich Low_complexity Low_complexity 1 29 0 269 143 41 0 chr6 38126746 38126795 -144288447 - MER66A LTR ERV1 -144 334 284 792 185 15 0 chr6 38126856 38126986 -144288256 + FLAM_C SINE Alu 1 132 -1 629 145 35 35 chr6 38126993 38127138 -144288104 + LTR23 LTR ERV1 293 437 0 237 306 96 19 chr6 38127366 38127523 -144287719 + L2 LINE L2 3145 3313 0 197 229 0 37 chr6 38129923 38129981 -144285261 + MIR SINE MIR 19 71 -137 1757 147 10 19 chr6 38130032 38130339 -144284903 - AluSx SINE Alu -8 304 1 2342 76 3 0 chr6 38130346 38130647 -144284595 - AluSg SINE Alu -8 302 1 712 94 0 0 chr6 38130651 38130747 -144284495 - AluSp/q SINE Alu -12 301 206 832 146 70 6 chr6 38130783 38130954 -144284288 - MLT1C LTR MaLR -285 182 1 514 123 37 0 chr6 38131013 38131094 -144284148 - AluJb SINE Alu -201 111 28 844 221 39 54 chr6 38131113 38131413 -144283829 - L2 LINE L2 -239 3074 2784 2136 117 3 0 chr6 38132909 38133208 -144282034 - AluSx SINE Alu -8 304 5 282 261 141 60 chr6 38138250 38138434 -144276808 - MIR3 SINE MIR -9 199 1 197 307 104 25 chr6 38141793 38141956 -144273286 + L2 LINE L2 2122 2297 -1017 404 316 0 0 chr6 38143264 38143416 -144271826 + (TCTCTG)n Simple_repeat Simple_repeat 5 156 0 1772 160 0 35 chr6 38144135 38144447 -144270795 - AluJb SINE Alu -3 309 9 1963 130 0 48 chr6 38144465 38144632 -144270610 - AluSx SINE Alu -12 300 153 2409 41 10 0 chr6 38144632 38144924 -144270318 - AluY SINE Alu -16 295 1 1963 130 0 48 chr6 38144924 38145071 -144270171 - AluSx SINE Alu -159 153 1 224 337 102 0 chr6 38145201 38145299 -144269943 - MIR3 SINE MIR -6 202 95 242 326 54 8 chr6 38146798 38146927 -144268315 - L2 LINE L2 -1060 2254 2120 192 346 0 30 chr6 38148441 38148542 -144266700 + MER5B DNA MER1_type 1 98 -80 319 318 11 0 chr6 38149490 38149578 -144265664 - MER91B DNA MER1_type -2 188 100 355 336 0 31 chr6 38149578 38149706 -144265536 - MER91B DNA MER1_type -55 135 12 460 310 0 0 chr6 38153136 38153249 -144261993 + MIR SINE MIR 14 126 -136 354 307 96 57 chr6 38153250 38153533 -144261709 + L1MB8 LINE L1 5311 5581 -597 2262 100 0 3 chr6 38153533 38153843 -144261399 + AluSc SINE Alu 1 309 0 354 307 96 57 chr6 38153843 38154152 -144261090 + L1MB8 LINE L1 5581 5933 -245 242 327 18 36 chr6 38154295 38154405 -144260837 + MIR SINE MIR 130 237 -25 1650 183 0 31 chr6 38154780 38155097 -144260145 - AluJb SINE Alu -1 311 5 292 231 214 34 chr6 38155199 38155316 -144259926 - MIR3 SINE MIR -16 192 55 186 167 0 0 chr6 38156105 38156141 -144259101 + CT-rich Low_complexity Low_complexity 2 37 0 282 49 0 0 chr6 38156243 38156284 -144258958 + AluSp/q SINE Alu 256 296 -7 2035 82 44 0 chr6 38156318 38156626 -144258616 - AluSx SINE Alu 0 321 2 2223 104 3 0 chr6 38156627 38156926 -144258316 - AluSg SINE Alu -6 304 5 539 302 88 0 chr6 38156926 38157131 -144258111 - MIR SINE MIR -37 225 3 248 246 87 0 chr6 38157763 38157832 -144257410 - MER116 DNA Mariner 0 80 6 730 158 0 0 chr6 38159623 38159737 -144255505 + AluSg/x SINE Alu 187 300 -9 2250 87 7 3 chr6 38159737 38160035 -144255207 + AluSq SINE Alu 1 299 -14 1261 201 121 35 chr6 38160119 38160523 -144254719 + MLT1J LTR MaLR 1 439 -72 740 257 93 51 chr6 38160613 38160775 -144254467 + MLT1I LTR MaLR 108 285 -124 2288 91 0 0 chr6 38160775 38161073 -144254169 + AluSx SINE Alu 1 298 -14 740 257 93 51 chr6 38161073 38161147 -144254095 + MLT1I LTR MaLR 285 354 -55 956 233 12 33 chr6 38161327 38161572 -144253670 - MLT1H LTR MaLR -296 253 14 464 301 174 17 chr6 38161881 38162117 -144253125 + MLT1J LTR MaLR 239 511 0 2372 63 0 3 chr6 38162268 38162571 -144252671 + AluY SINE Alu 1 302 -9 2373 63 3 22 chr6 38162579 38162895 -144252347 + AluY SINE Alu 1 310 -1 2196 111 0 13 chr6 38163492 38163808 -144251434 - AluSx SINE Alu 0 312 1 1194 231 165 18 chr6 38164159 38164558 -144250684 + LTR16C LTR ERVL 19 476 -15 1057 237 4 4 chr6 38164584 38164812 -144250430 - MIR SINE MIR -33 229 2 304 295 83 68 chr6 38166444 38166841 -144248401 + L1MC4a LINE L1 5665 6067 -1741 2058 99 0 40 chr6 38166923 38167226 -144248016 + AluSx SINE Alu 1 291 -21 2161 87 10 0 chr6 38167231 38167520 -144247722 + AluSg SINE Alu 1 292 -18 292 356 10 0 chr6 38167607 38167711 -144247531 + MIR SINE MIR 49 153 -109 936 161 0 13 chr6 38167713 38167868 -144247374 + FRAM SINE Alu 5 157 -19 1790 173 0 0 chr6 38167870 38168190 -144247052 + AluJo SINE Alu 1 320 0 195 241 107 18 chr6 38168281 38168393 -144246849 - L2 LINE L2 -257 3056 2935 443 185 0 0 chr6 38169402 38169483 -144245759 + MIR SINE MIR 113 193 -69 264 244 126 50 chr6 38169711 38169830 -144245412 - L2 LINE L2 0 3313 3186 2468 41 0 0 chr6 38169871 38170165 -144245077 - AluY SINE Alu -17 294 1 320 293 35 17 chr6 38170394 38170510 -144244732 - MER91A DNA MER1_type -15 181 64 300 270 111 0 chr6 38170778 38170904 -144244338 - MIR3 SINE MIR -62 146 7 406 0 0 0 chr6 38171035 38171080 -144244162 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1410 169 7 75 chr6 38171080 38171375 -144243867 - AluJo SINE Alu -1 327 9 554 252 7 14 chr6 38171378 38171521 -144243721 + MIR SINE MIR 121 262 0 2156 87 21 0 chr6 38171763 38172051 -144243191 + AluSx SINE Alu 4 297 -15 197 171 0 0 chr6 38172060 38172095 -144243147 - L2 LINE L2 -17 3255 3221 1562 188 34 7 chr6 38172124 38172422 -144242820 - AluJb SINE Alu 0 312 7 1776 125 7 56 chr6 38172483 38172787 -144242455 + AluSg SINE Alu 1 289 -21 869 248 40 52 chr6 38172834 38172967 -144242275 - L1MC5 LINE L1 -30 7931 7798 2247 92 0 3 chr6 38172967 38173262 -144241980 - AluSq SINE Alu -16 297 4 869 248 40 52 chr6 38173262 38173455 -144241787 - L1MC5 LINE L1 -163 7798 7609 401 219 219 0 chr6 38174633 38174738 -144240504 + MER45A DNA AcHobo 47 174 -4 2157 90 10 13 chr6 38175500 38175812 -144239430 + AluSx SINE Alu 1 311 -1 340 298 139 29 chr6 38175893 38176091 -144239151 - MIR SINE MIR -34 228 15 2302 74 7 0 chr6 38176351 38176649 -144238593 + AluSx SINE Alu 1 300 -12 997 173 15 50 chr6 38176749 38176951 -144238291 + AluJo SINE Alu 29 223 -89 670 146 14 69 chr6 38176951 38177095 -144238147 + AluSc SINE Alu 164 299 -10 22 0 0 0 chr6 38177468 38177490 -144237752 + GC_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr6 38177543 38177570 -144237672 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr6 38177881 38177903 -144237339 + GC_rich Low_complexity Low_complexity 1 22 0 2251 88 0 0 chr6 38178861 38179158 -144236084 + AluSx SINE Alu 5 301 -11 293 198 38 2 chr6 38179481 38179541 -144235701 + MER57A LTR ERV1 295 348 -55 213 167 24 0 chr6 38179587 38179629 -144235613 + MIR SINE MIR 92 134 -128 30 0 0 0 chr6 38179804 38179834 -144235408 + AT_rich Low_complexity Low_complexity 1 30 0 2134 111 0 0 chr6 38179834 38180123 -144235119 - AluSq SINE Alu -24 289 1 1733 161 3 17 chr6 38180662 38180960 -144234282 + AluJo SINE Alu 1 294 -18 864 143 0 8 chr6 38180995 38181128 -144234114 + FLAM_C SINE Alu 1 132 -1 191 305 211 0 chr6 38181219 38181314 -144233928 + MIR3 SINE MIR 89 203 -5 2164 119 0 10 chr6 38182365 38182675 -144232567 + AluSq SINE Alu 1 307 -6 1306 177 73 7 chr6 38182828 38183116 -144232126 + AluJb SINE Alu 1 307 -5 376 175 0 0 chr6 38183122 38183185 -144232057 - AluJb SINE Alu -35 267 205 1525 164 3 42 chr6 38183190 38183352 -144231890 - AluJb SINE Alu -13 299 153 2324 86 7 3 chr6 38183352 38183656 -144231586 - AluSq SINE Alu -8 305 1 1525 164 3 42 chr6 38183656 38183804 -144231438 - AluJb SINE Alu -159 153 1 2084 133 46 20 chr6 38183804 38183880 -144231362 + Tigger1 DNA MER2_type 2014 2087 -331 2166 114 3 3 chr6 38183880 38184188 -144231054 + AluSx SINE Alu 1 308 -4 2084 133 46 20 chr6 38184188 38184502 -144230740 + Tigger1 DNA MER2_type 2087 2414 -4 473 195 123 0 chr6 38184567 38184803 -144230439 - L1ME3A LINE L1 -214 5956 5594 1690 150 36 0 chr6 38184809 38185089 -144230153 - AluJb SINE Alu -10 302 13 799 132 0 59 chr6 38185114 38185250 -144229992 - FLAM_C SINE Alu -1 132 5 1506 148 7 24 chr6 38185256 38185383 -144229859 - L1M3 LINE L1 -573 5607 5479 2351 85 0 0 chr6 38185383 38185689 -144229553 - AluSg SINE Alu -4 306 1 1506 148 7 24 chr6 38185689 38185851 -144229391 - L1M3 LINE L1 -701 5479 5323 229 130 65 0 chr6 38185851 38185897 -144229345 - AluJb SINE Alu -8 293 245 1027 140 34 17 chr6 38186065 38186243 -144228999 - AluJb SINE Alu -45 267 87 787 211 110 25 chr6 38186243 38186397 -144228845 + Charlie2 DNA MER1_type 2475 2615 -247 2300 103 0 0 chr6 38186397 38186709 -144228533 + AluSx SINE Alu 1 312 0 2046 105 0 3 chr6 38186716 38187037 -144228205 + AluSx SINE Alu 1 320 0 787 211 110 25 chr6 38187037 38187229 -144228013 + Charlie2 DNA MER1_type 2620 2860 -2 326 112 24 208 chr6 38187281 38187328 -144227914 - MER5A DNA MER1_type -84 105 51 2249 93 36 0 chr6 38187328 38187629 -144227613 - AluSx SINE Alu 0 312 1 841 103 15 37 chr6 38187635 38187771 -144227471 - FLAM_C SINE Alu 0 133 1 326 112 24 208 chr6 38187771 38187841 -144227401 - MER5A DNA MER1_type -143 46 4 326 278 11 0 chr6 38187850 38187940 -144227302 - L1ME LINE L1 -523 5647 5557 216 277 117 52 chr6 38187988 38188219 -144227023 + L2 LINE L2 1917 2162 -1152 2256 107 3 3 chr6 38188257 38188567 -144226675 + AluSx SINE Alu 1 310 -2 904 155 0 0 chr6 38188613 38188755 -144226487 + FLAM_C SINE Alu 1 142 -1 302 201 0 174 chr6 38188756 38188814 -144226428 + MLT2C1 LTR ERVL 17 83 -314 614 231 15 15 chr6 38188814 38188944 -144226298 - FLAM_A SINE Alu -3 130 1 302 201 0 174 chr6 38188944 38188995 -144226247 + MLT2C1 LTR ERVL 83 96 -301 1967 133 0 32 chr6 38188995 38189311 -144225931 + AluSq SINE Alu 1 306 -7 302 201 0 174 chr6 38189311 38189349 -144225893 + MLT2C1 LTR ERVL 96 139 -258 2058 107 24 0 chr6 38189349 38189639 -144225603 - AluSg SINE Alu -13 297 1 1578 114 83 19 chr6 38189640 38189904 -144225338 - AluSc SINE Alu -20 289 9 2100 93 23 3 chr6 38190256 38190556 -144224686 + AluSg SINE Alu 1 306 -4 209 276 0 26 chr6 38191264 38191340 -144223902 + CT-rich Low_complexity Low_complexity 2 75 0 702 263 13 36 chr6 38191969 38192193 -144223049 - L2 LINE L2 -3 3310 3092 620 279 76 0 chr6 38192800 38192972 -144222270 - MER91A DNA MER1_type 0 196 12 1786 157 3 22 chr6 38194735 38195047 -144220195 - AluJb SINE Alu -6 306 1 2218 89 0 13 chr6 38195136 38195440 -144219802 - AluSx SINE Alu 0 312 13 1348 130 0 5 chr6 38195557 38195772 -144219470 - AluSq SINE Alu -99 214 1 34 24 0 0 chr6 38195776 38195817 -144219425 + AT_rich Low_complexity Low_complexity 1 41 0 1984 135 0 3 chr6 38195827 38196123 -144219119 + AluSx SINE Alu 1 295 -17 1878 149 7 0 chr6 38196176 38196472 -144218770 + AluSx SINE Alu 1 298 -14 554 233 15 53 chr6 38196487 38196620 -144218622 - FLAM_A SINE Alu -5 128 1 5247 74 33 55 chr6 38196652 38197610 -144217632 + SVA Other Other 25 868 -636 5630 78 32 15 chr6 38197720 38198564 -144216678 - SVA Other Other -520 866 9 693 286 42 16 chr6 38198566 38198844 -144216398 - L1ME LINE L1 -465 5701 5411 27 49 0 0 chr6 38200049 38200090 -144215152 + AT_rich Low_complexity Low_complexity 1 41 0 1971 123 7 0 chr6 38200138 38200457 -144214785 + AluSq SINE Alu 1 321 0 246 293 83 22 chr6 38200659 38200809 -144214433 + MIR SINE MIR 24 183 -79 1846 107 56 0 chr6 38200867 38201169 -144214073 - AluSx SINE Alu 0 317 1 2080 125 0 3 chr6 38201906 38202217 -144213025 - AluSg SINE Alu 0 310 1 1870 112 3 25 chr6 38202373 38202658 -144212584 + AluSx SINE Alu 30 308 -4 345 346 132 0 chr6 38202853 38203058 -144212184 + MIR SINE MIR 20 251 -11 447 92 0 0 chr6 38203061 38203126 -144212116 + (TA)n Simple_repeat Simple_repeat 2 66 0 1865 129 0 46 chr6 38203126 38203281 -144211961 - AluSx SINE Alu -24 288 152 2228 82 24 0 chr6 38203281 38203575 -144211667 - AluSp SINE Alu -12 301 1 1865 129 0 46 chr6 38203575 38203721 -144211521 - AluSx SINE Alu -160 152 1 195 42 0 0 chr6 38204130 38204154 -144211088 + (T)n Simple_repeat Simple_repeat 1 24 0 627 231 8 8 chr6 38204257 38204374 -144210868 - FRAM SINE Alu -59 117 1 38 0 0 20 chr6 38204384 38204401 -144210841 + AT_rich Low_complexity Low_complexity 1 17 -31 1904 130 3 23 chr6 38204401 38204702 -144210540 - AluSx SINE Alu -17 295 1 38 0 0 20 chr6 38204702 38204733 -144210509 + AT_rich Low_complexity Low_complexity 17 48 0 240 314 141 0 chr6 38204788 38204909 -144210333 + MIR SINE MIR 121 258 -4 189 107 0 0 chr6 38204920 38204948 -144210294 + (CAT)n Simple_repeat Simple_repeat 3 30 0 878 236 78 14 chr6 38205785 38206045 -144209197 - MLT1C LTR MaLR -4 589 187 499 214 4 61 chr6 38206457 38206686 -144208556 + SVA Other Other 574 789 -597 6738 60 5 43 chr6 38206703 38207695 -144207547 + SVA Other Other 433 1386 0 615 209 26 40 chr6 38207702 38207895 -144207347 - LTR24B LTR ERV1 -40 595 374 4450 125 51 32 chr6 38207896 38209095 -144206147 - pTR5 LTR ERV1 -171 2267 743 1682 106 144 35 chr6 38209096 38209437 -144205805 - LTR24B LTR ERV1 -195 381 4 1804 128 3 35 chr6 38209768 38210057 -144205185 - AluJb SINE Alu -15 297 18 206 32 32 0 chr6 38210136 38210167 -144205075 + (CAA)n Simple_repeat Simple_repeat 1 32 0 315 56 0 74 chr6 38210221 38210275 -144204967 - Alu SINE Alu -5 303 257 23 0 0 0 chr6 38210644 38210667 -144204575 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr6 38210701 38210722 -144204520 + GC_rich Low_complexity Low_complexity 1 21 0 219 146 0 0 chr6 38210761 38210802 -144204440 + (CCG)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr6 38210809 38210840 -144204402 + GC_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr6 38213472 38213517 -144201725 + GC_rich Low_complexity Low_complexity 1 45 0 2060 88 24 3 chr6 38215493 38215788 -144199454 - AluY SINE Alu -10 301 1 618 202 34 0 chr6 38215788 38215907 -144199335 - AluJo/FRAM SINE Alu -10 302 180 1457 104 46 8 chr6 38215909 38216149 -144199093 - AluSc SINE Alu -5 304 56 1170 201 148 11 chr6 38216218 38216481 -144198761 - AluJb SINE Alu -1 301 3 768 121 14 71 chr6 38216609 38216750 -144198492 - AluSq/x SINE Alu -178 134 2 1287 142 93 19 chr6 38217545 38217856 -144197386 - MSTA LTR MaLR -64 364 1 231 127 73 18 chr6 38217856 38217910 -144197332 - AluSq/x SINE Alu -191 112 56 1801 133 31 0 chr6 38217929 38218215 -144197027 - AluSg SINE Alu -15 295 1 1553 134 161 8 chr6 38218226 38218487 -144196755 - AluSx SINE Alu 0 302 2 1258 155 9 122 chr6 38218489 38218678 -144196564 - AluJb SINE Alu -14 298 162 1972 100 7 47 chr6 38218678 38218979 -144196263 + AluSx SINE Alu 5 293 -19 1258 155 9 122 chr6 38218979 38219125 -144196117 - AluJb SINE Alu -150 162 1 1839 154 83 0 chr6 38219125 38219450 -144195792 - L1PA16 LINE L1 -11 6155 5804 1833 117 20 37 chr6 38219752 38220051 -144195191 + AluSc SINE Alu 1 294 -15 1848 109 0 66 chr6 38220193 38220496 -144194746 - AluSq SINE Alu -30 283 1 1034 198 75 4 chr6 38220550 38220777 -144194465 - AluSx SINE Alu -17 295 53 1702 141 10 21 chr6 38220983 38221273 -144193969 - AluY SINE Alu -18 293 7 1891 109 11 4 chr6 38221353 38221627 -144193615 - AluSc SINE Alu -32 277 2 1985 79 48 7 chr6 38221628 38221919 -144193323 - AluY SINE Alu -8 303 1 1644 104 52 0 chr6 38221919 38222168 -144193074 - AluSp SINE Alu -17 296 35 1661 111 49 62 chr6 38222423 38222549 -144192693 + AluSx SINE Alu 6 132 -180 2201 48 4 0 chr6 38222549 38222818 -144192424 + AluY SINE Alu 14 283 -28 2066 110 0 14 chr6 38222822 38223112 -144192130 + AluSq SINE Alu 1 286 -27 189 0 0 0 chr6 38223112 38223133 -144192109 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1661 111 49 62 chr6 38223133 38223288 -144191954 + AluSx SINE Alu 133 289 -23 805 113 52 0 chr6 38223421 38223536 -144191706 - AluSq/x SINE Alu -191 121 1 1524 192 14 7 chr6 38223541 38223698 -144191544 - AluJo SINE Alu -18 294 133 2260 101 0 0 chr6 38223698 38223994 -144191248 - AluY SINE Alu -15 296 1 1524 192 14 7 chr6 38223994 38224128 -144191114 - AluJo SINE Alu -179 133 1 1799 203 108 0 chr6 38224451 38224875 -144190367 - L1ME3 LINE L1 0 6162 5693 6952 56 6 35 chr6 38224875 38225860 -144189382 - SVA Other Other 0 1386 430 5483 62 24 1 chr6 38225888 38226634 -144188608 - SVA Other Other -572 814 52 1905 117 13 30 chr6 38226774 38226934 -144188308 - AluSx SINE Alu -18 294 140 2268 77 3 26 chr6 38226934 38227244 -144187998 - AluY SINE Alu -8 303 1 1905 117 13 30 chr6 38227244 38227382 -144187860 - AluSx SINE Alu -172 140 1 1968 135 20 0 chr6 38227386 38227683 -144187559 - AluSx SINE Alu -9 303 1 1347 167 59 42 chr6 38227745 38228032 -144187210 - AluJo SINE Alu -20 292 1 223 238 12 12 chr6 38228757 38228841 -144186401 + GA-rich Low_complexity Low_complexity 3 86 0 791 227 7 0 chr6 38228993 38229147 -144186095 - AluJb SINE Alu -156 156 2 1552 170 17 17 chr6 38229177 38229465 -144185777 + AluJb SINE Alu 7 294 -18 618 241 0 0 chr6 38229468 38229584 -144185658 - FLAM_A SINE Alu -17 116 1 2500 46 10 0 chr6 38229783 38230089 -144185153 - AluY SINE Alu -2 309 1 1459 256 35 14 chr6 38230341 38230767 -144184475 + L2 LINE L2 2414 2848 -466 448 102 0 0 chr6 38230767 38230826 -144184416 + AluSq/x SINE Alu 62 120 -192 1950 145 0 3 chr6 38231035 38231331 -144183911 + AluSx SINE Alu 1 295 -17 937 126 0 15 chr6 38231492 38231627 -144183615 + FLAM_C SINE Alu 1 133 0 300 267 137 7 chr6 38231640 38231786 -144183456 + L1MEd LINE L1 951 1115 -5004 2099 108 3 3 chr6 38231798 38232093 -144183149 - AluSg SINE Alu -15 295 1 437 176 0 24 chr6 38232288 38232373 -144182869 - AluJb SINE Alu -32 280 198 23 0 0 0 chr6 38232380 38232403 -144182839 + AT_rich Low_complexity Low_complexity 1 23 0 1405 181 51 14 chr6 38232811 38233103 -144182139 + AluJo SINE Alu 1 303 -9 1749 155 4 0 chr6 38233316 38233593 -144181649 + AluJo SINE Alu 13 290 -22 881 95 16 0 chr6 38233603 38233729 -144181513 + AluSq/x SINE Alu 5 132 -180 2099 114 0 7 chr6 38233732 38234038 -144181204 + AluSc SINE Alu 1 304 -5 1235 206 0 114 chr6 38234447 38234797 -144180445 - AluSx SINE Alu -2 310 1 1909 132 17 0 chr6 38234934 38235230 -144180012 - AluJb SINE Alu -11 301 1 326 346 13 38 chr6 38235307 38235466 -144179776 - MER5A DNA MER1_type 0 189 35 233 321 151 20 chr6 38235716 38236015 -144179227 + L2 LINE L2 2153 2490 -824 1328 144 28 12 chr6 38242400 38242650 -144172592 - L1PA16 LINE L1 -107 6059 5806 2225 105 3 0 chr6 38242747 38243053 -144172189 - AluSx SINE Alu -5 307 1 678 156 25 25 chr6 38243053 38243175 -144172067 - AluSg/x SINE Alu -7 302 181 500 351 51 16 chr6 38243194 38243361 -144171881 + LTR16C LTR ERVL 166 326 -165 2329 95 0 0 chr6 38243361 38243665 -144171577 - AluSx SINE Alu -8 304 1 500 351 51 16 chr6 38243665 38243810 -144171432 + LTR16C LTR ERVL 326 489 -2 1094 238 102 56 chr6 38244043 38244434 -144170808 + MLT1I LTR MaLR 1 409 0 184 308 241 8 chr6 38244746 38244879 -144170363 - L2 LINE L2 -572 2742 2579 219 36 0 0 chr6 38245003 38245031 -144170211 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2298 46 0 4 chr6 38245031 38245311 -144169931 - AluY SINE Alu -32 279 1 2405 74 0 0 chr6 38245334 38245631 -144169611 - AluSg SINE Alu -13 297 1 453 61 45 0 chr6 38245631 38245697 -144169545 - MLT2C2 LTR ERVL -201 263 195 1936 131 24 0 chr6 38249098 38249396 -144165846 + AluSx SINE Alu 1 305 -7 2005 94 3 49 chr6 38249999 38250307 -144164935 + AluSx SINE Alu 1 294 -18 2097 113 7 3 chr6 38250314 38250614 -144164628 + AluSq SINE Alu 1 301 -12 274 157 78 0 chr6 38250624 38250675 -144164567 + L1MB5 LINE L1 6042 6096 -78 692 113 0 0 chr6 38250675 38250772 -144164470 + AluJb SINE Alu 211 307 -5 2373 75 0 0 chr6 38251346 38251651 -144163591 + AluSg SINE Alu 1 305 -5 1067 82 89 0 chr6 38252438 38252596 -144162646 + AluJb SINE Alu 136 307 -5 1664 154 32 4 chr6 38253971 38254250 -144160992 - AluJo SINE Alu -19 293 7 2184 114 3 0 chr6 38254559 38254866 -144160376 - AluSx SINE Alu -4 308 1 2325 97 3 0 chr6 38255247 38255558 -144159684 + AluSx SINE Alu 1 312 0 2062 80 3 53 chr6 38255888 38256190 -144159052 - AluSp SINE Alu -20 293 7 201 74 0 0 chr6 38256723 38256750 -144158492 + (T)n Simple_repeat Simple_repeat 1 27 0 1447 124 5 0 chr6 38256951 38257168 -144158074 + AluSg/x SINE Alu 86 303 -9 781 62 0 0 chr6 38257171 38257268 -144157974 + AluSg SINE Alu 2 98 -212 1883 66 8 4 chr6 38257268 38257511 -144157731 + AluSg SINE Alu 54 297 -13 201 39 0 0 chr6 38259388 38259414 -144155828 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 4159 75 16 20 chr6 38261394 38261944 -144153298 - LTR14 LTR ERVK 0 548 1 4155 2 0 2 chr6 38261944 38262462 -144152780 - HERVKC4 LTR ERVK 0 5262 4746 419 148 0 0 chr6 38362462 38362523 -144052719 - AluS SINE Alu -249 62 2 2314 87 0 7 chr6 38362527 38362827 -144052415 - AluSg1 SINE Alu -11 298 1 1046 281 46 9 chr6 38362856 38363205 -144052037 - L1MB8 LINE L1 -2 6176 5815 676 234 0 0 chr6 38363233 38363370 -144051872 - L1PB4 LINE L1 0 6156 6020 412 224 0 0 chr6 38363370 38363446 -144051796 - U1 snRNA snRNA -87 78 3 1376 231 20 3 chr6 38363451 38363750 -144051492 - L1MB8 LINE L1 -343 5823 5520 1868 160 0 0 chr6 38363823 38364116 -144051126 + AluSg SINE Alu 8 300 -10 186 173 40 0 chr6 38364511 38364586 -144050656 + (TA)n Simple_repeat Simple_repeat 2 79 0 459 288 132 51 chr6 38364869 38365202 -144050040 + MLT1L LTR MaLR 246 605 -10 708 116 16 31 chr6 38365861 38365990 -144049252 - L1MA8 LINE L1 -4 6287 6161 345 244 9 70 chr6 38367559 38367674 -144047568 - MIR SINE MIR -135 127 20 545 280 101 14 chr6 38368572 38368779 -144046463 + MIR SINE MIR 1 225 -37 23 0 0 0 chr6 38369421 38369444 -144045798 + AT_rich Low_complexity Low_complexity 1 23 0 904 137 3 8 chr6 38370428 38370449 -144044793 + L1P2 LINE L1 5685 5705 -461 2794 53 0 0 chr6 38370449 38370771 -144044471 - L1PA5 LINE L1 -8 6146 5825 904 137 3 8 chr6 38370771 38370902 -144044340 + L1PA5 LINE L1 5705 5835 -331 303 71 0 0 chr6 38370923 38370965 -144044277 + (TC)n Simple_repeat Simple_repeat 2 43 0 249 33 0 0 chr6 38370965 38370995 -144044247 + (CA)n Simple_repeat Simple_repeat 1 30 0 322 308 71 98 chr6 38371936 38372298 -144042944 - L2 LINE L2 -251 3062 2715 201 265 0 0 chr6 38372467 38372516 -144042726 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 863 189 43 18 chr6 38372995 38373159 -144042083 - MER20 DNA MER1_type -7 212 45 355 177 15 5 chr6 38373940 38374062 -144041180 + MER53 DNA DNA 1 189 0 293 0 27 0 chr6 38375208 38375245 -144039997 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7630 33 0 0 chr6 38375245 38376433 -144038809 - L1PA5 LINE L1 -16 6138 4935 4917 58 0 0 chr6 38376437 38377053 -144038189 + L1PA5 LINE L1 4316 4931 -1215 822 318 105 56 chr6 38377157 38377976 -144037266 + L2 LINE L2 1813 2590 -723 2130 115 0 0 chr6 38377976 38378262 -144036980 + AluY SINE Alu 1 286 -25 822 318 105 56 chr6 38378262 38378345 -144036897 + L2 LINE L2 2590 2667 -646 2177 124 0 3 chr6 38378345 38378643 -144036599 + AluSq SINE Alu 3 299 -14 822 318 105 56 chr6 38378643 38379153 -144036089 + L2 LINE L2 2667 3295 -18 1624 190 10 0 chr6 38379399 38379689 -144035553 + AluJb SINE Alu 3 295 -17 284 208 14 0 chr6 38379966 38380038 -144035204 + MER116 DNA Mariner 2 74 -6 204 333 161 23 chr6 38381392 38381566 -144033676 + MIR3 SINE MIR 7 204 -4 22 0 0 0 chr6 38381946 38381968 -144033274 + AT_rich Low_complexity Low_complexity 1 22 0 382 362 70 18 chr6 38382382 38382611 -144032631 - MIR SINE MIR -19 243 3 197 0 71 0 chr6 38382809 38382837 -144032405 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 5792 195 88 33 chr6 38383616 38384990 -144030252 + MER52A LTR ERV1 385 1755 0 1970 123 32 95 chr6 38384991 38385311 -144029931 + THE1C LTR MaLR 1 339 -36 2200 117 0 28 chr6 38385311 38385449 -144029793 + AluSc SINE Alu 2 142 -167 2311 96 0 7 chr6 38385449 38385750 -144029492 + AluSp SINE Alu 1 299 -14 2200 117 0 28 chr6 38385750 38385928 -144029314 + AluSc SINE Alu 142 309 0 1970 123 32 95 chr6 38385928 38385939 -144029303 + THE1C LTR MaLR 339 349 -26 2296 95 0 22 chr6 38385939 38386254 -144028988 - AluSc SINE Alu -1 308 1 1970 123 32 95 chr6 38386254 38386321 -144028921 + THE1C LTR MaLR 349 375 0 1106 237 58 28 chr6 38386872 38387197 -144028045 + LTR43 LTR ERV1 131 465 -137 189 330 108 22 chr6 38388062 38388247 -144026995 + MIR SINE MIR 36 236 -26 21 0 0 0 chr6 38388453 38388474 -144026768 + AT_rich Low_complexity Low_complexity 1 21 0 1190 195 23 27 chr6 38388565 38388826 -144026416 - L1MC2 LINE L1 -25 6319 6060 2277 176 36 25 chr6 38388828 38389271 -144025971 + LOR1b LTR ERV1 4 451 -10 278 135 0 0 chr6 38389271 38389308 -144025934 + LOR1a LTR ERV1 461 497 0 2635 180 19 2 chr6 38389310 38389793 -144025449 - L1MC2 LINE L1 -282 6062 5572 1900 126 11 4 chr6 38389794 38390072 -144025170 + AluSc SINE Alu 4 283 -26 3065 182 47 0 chr6 38390107 38390678 -144024564 - L1MC2 LINE L1 -282 6456 5859 7909 39 0 1 chr6 38390700 38391891 -144023351 + L1PA4 LINE L1 4963 6152 -3 399 264 24 8 chr6 38391905 38392030 -144023212 - L1MD3 LINE L1 0 7995 7869 1938 67 14 4 chr6 38392055 38392311 -144022931 - HERV9 LTR ERV1 -162 8237 504 20991 113 10 9 chr6 38392342 38395362 -144019880 - HERV9 LTR ERV1 -5260 3139 117 313 308 18 6 chr6 38395374 38395543 -144019699 - L1MC2 LINE L1 -847 5693 5523 192 40 0 0 chr6 38395554 38395579 -144019663 + (TG)n Simple_repeat Simple_repeat 2 26 0 1267 122 0 0 chr6 38395579 38395750 -144019492 - AluY SINE Alu -12 299 126 260 223 19 68 chr6 38395985 38396088 -144019154 - L1MC2 LINE L1 -1202 5338 5241 733 124 0 0 chr6 38396091 38396188 -144019054 - AluSp SINE Alu -202 111 15 2281 281 26 7 chr6 38396192 38397099 -144018143 - L1MC2 LINE L1 -2996 3544 2620 1963 105 7 14 chr6 38397099 38397384 -144017858 + LTR12 LTR ERV1 5 287 -427 311 181 0 42 chr6 38397386 38397458 -144017784 + LTR30 LTR ERV1 556 624 -98 627 153 28 11 chr6 38397458 38397602 -144017640 + pTR5 LTR ERV1 52 614 -100 2718 199 90 21 chr6 38397603 38398250 -144016992 - L1MC2 LINE L1 -3912 2628 1908 1757 191 0 0 chr6 38398250 38398559 -144016683 + AluJb SINE Alu 1 309 -3 2718 199 90 21 chr6 38398559 38398758 -144016484 - L1MC2 LINE L1 -4632 1908 1724 1030 49 0 0 chr6 38398760 38398883 -144016359 + AluY SINE Alu 175 297 -14 532 237 40 56 chr6 38398885 38399083 -144016159 - L1MC2 LINE L1 -4854 1686 1492 1099 316 41 21 chr6 38399099 38399662 -144015580 + L1M4 LINE L1 3365 3938 -2208 2032 122 10 3 chr6 38399687 38399991 -144015251 + AluSp SINE Alu 1 306 -7 258 314 52 12 chr6 38400135 38400307 -144014935 + L1M4 LINE L1 4148 4326 -1820 465 115 0 0 chr6 38400314 38400375 -144014867 + MSTB LTR MaLR 1 61 -365 1038 242 42 36 chr6 38400380 38400830 -144014412 - L1M4 LINE L1 -3113 3033 2581 21 36 0 0 chr6 38401187 38401215 -144014027 + AT_rich Low_complexity Low_complexity 1 28 0 929 289 39 11 chr6 38402293 38402649 -144012593 - L1MB8 LINE L1 -2 6176 5811 593 244 7 0 chr6 38402658 38402793 -144012449 - L1PB4 LINE L1 0 6156 6021 471 195 0 0 chr6 38402793 38402870 -144012372 - U1 snRNA snRNA -86 79 3 1286 238 23 20 chr6 38402875 38403178 -144012064 - L1MB8 LINE L1 -343 5823 5520 2196 89 0 17 chr6 38403439 38403731 -144011511 - AluY SINE Alu -24 287 1 355 306 117 10 chr6 38404288 38404494 -144010748 + MLT1L LTR MaLR 312 539 -76 2363 95 0 0 chr6 38405084 38405389 -144009853 + AluY SINE Alu 1 305 -6 694 137 8 23 chr6 38405507 38405638 -144009604 - L1MA8 LINE L1 -4 6287 6159 188 65 0 32 chr6 38405671 38405702 -144009540 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 387 0 0 0 chr6 38405747 38405790 -144009452 + (TTA)n Simple_repeat Simple_repeat 3 45 0 11500 89 15 1 chr6 38405790 38408082 -144007160 - L1PA7 LINE L1 -18 6136 3825 14460 30 0 1 chr6 38408346 38410071 -144005171 - L1PA3 LINE L1 -2356 3790 2067 14021 33 2 0 chr6 38410071 38412407 -144002835 + L1PA3 LINE L1 3817 6154 -1 317 271 52 48 chr6 38412407 38412617 -144002625 + L1MEc LINE L1 1438 1648 -4748 2107 118 23 10 chr6 38412861 38413166 -144002076 - AluSp SINE Alu -4 309 1 2471 80 0 0 chr6 38413397 38413698 -144001544 + AluSc SINE Alu 1 301 -8 342 238 0 25 chr6 38414490 38414570 -144000672 - MIR SINE MIR -135 127 50 492 323 99 10 chr6 38415509 38415710 -143999532 + MIR SINE MIR 6 224 -38 2229 95 0 7 chr6 38415873 38416193 -143999049 + AluY SINE Alu 1 318 0 250 363 47 32 chr6 38416194 38416384 -143998858 - MIR SINE MIR -19 243 51 792 167 49 0 chr6 38417010 38417154 -143998088 + AluJb SINE Alu 162 312 0 1825 143 87 0 chr6 38417157 38417495 -143997747 + AluSq SINE Alu 1 363 0 5782 197 64 63 chr6 38418205 38419645 -143995597 + MER52A LTR ERV1 387 1755 0 1831 128 30 36 chr6 38419646 38419983 -143995259 + THE1C LTR MaLR 1 335 -40 373 138 15 0 chr6 38420196 38420261 -143994981 + LTR60 LTR ERV1 1 66 -520 949 258 52 25 chr6 38420388 38420714 -143994528 + LTR43 LTR ERV1 131 465 -137 233 335 108 22 chr6 38421574 38421759 -143993483 + MIR SINE MIR 36 236 -26 26731 39 1 1 chr6 38421885 38425718 -143989524 + L1PA3 LINE L1 3 3830 -2316 9654 36 0 0 chr6 38425718 38427584 -143987658 + L1PA3 LINE L1 4287 6152 -3 1201 197 19 26 chr6 38427797 38428061 -143987181 - L1MC2 LINE L1 -23 6321 6060 2055 170 29 29 chr6 38428099 38428510 -143986732 + LOR1b LTR ERV1 41 451 -10 2416 169 24 53 chr6 38428551 38428746 -143986496 - L1MC2 LINE L1 -284 6060 5861 2369 94 0 3 chr6 38428746 38429055 -143986187 + AluSg SINE Alu 1 308 -2 2416 169 24 53 chr6 38429055 38429368 -143985874 - L1MC2 LINE L1 -483 5861 5567 1568 155 76 11 chr6 38429368 38429632 -143985610 + MER51A LTR ERV1 1 281 -353 3895 192 59 9 chr6 38429917 38430148 -143985094 - L1MC2 LINE L1 -25 6319 6101 1943 194 38 70 chr6 38430148 38430236 -143985006 + LOR1b LTR ERV1 1 90 -371 2170 94 3 20 chr6 38430236 38430533 -143984709 - AluSg SINE Alu -18 292 1 1943 194 38 70 chr6 38430533 38430919 -143984323 + LOR1b LTR ERV1 90 460 -1 3895 192 59 9 chr6 38430919 38431501 -143983741 - L1MC2 LINE L1 -243 6101 5465 3474 227 77 69 chr6 38431513 38431995 -143983247 - L1MD2 LINE L1 -1 6752 6275 2297 81 0 0 chr6 38431995 38432311 -143982931 - AluY SINE Alu 0 316 1 3474 227 77 69 chr6 38432311 38433217 -143982025 - L1MD2 LINE L1 -478 6275 5323 2283 70 13 20 chr6 38433217 38433517 -143981725 - AluSg SINE Alu -12 298 1 3474 227 77 69 chr6 38433517 38434185 -143981057 - L1MD2 LINE L1 -1430 5323 4662 4486 249 66 24 chr6 38434193 38434243 -143980999 - L1MD2 LINE L1 -2079 4461 4415 2414 68 0 0 chr6 38434243 38434536 -143980706 - AluY SINE Alu -18 293 1 4486 249 66 24 chr6 38434536 38435385 -143979857 - L1MD2 LINE L1 -2125 4415 3603 2160 132 3 0 chr6 38435385 38435689 -143979553 - AluSp SINE Alu -8 305 1 4486 249 66 24 chr6 38435689 38437052 -143978190 - L1MD2 LINE L1 -2937 3603 2122 262 211 0 66 chr6 38437052 38437128 -143978114 + MER77 LTR ERV1 109 179 -426 * 385 288 76 70 chr6 38437119 38437540 -143977702 + MER21B LTR ERV1 98 531 -74 1542 217 113 40 chr6 38437540 38437727 -143977515 - L1MD2 LINE L1 -4411 2129 1957 1678 184 13 3 chr6 38437727 38438032 -143977210 + AluJb SINE Alu 1 308 -4 1542 217 113 40 chr6 38438032 38438255 -143976987 - L1MD2 LINE L1 -4583 1957 1752 2094 81 46 3 chr6 38438255 38438538 -143976704 + AluY SINE Alu 1 295 -16 1542 217 113 40 chr6 38438538 38438721 -143976521 - L1MD2 LINE L1 -4788 1752 1492 894 300 80 16 chr6 38438733 38439220 -143976022 + L1M4 LINE L1 3336 3853 -2293 238 293 64 21 chr6 38439235 38439423 -143975819 + L1M4 LINE L1 4133 4328 -1818 2201 163 44 10 chr6 38439423 38439828 -143975414 + MSTB LTR MaLR 1 419 -7 953 269 54 40 chr6 38439875 38440429 -143974813 - L1M4 LINE L1 -3005 3141 2580 21 36 0 0 chr6 38440789 38440817 -143974425 + AT_rich Low_complexity Low_complexity 1 28 0 257 298 44 25 chr6 38441540 38441698 -143973544 - L1P5 LINE L1 -686 5468 5308 2397 47 7 13 chr6 38441729 38442028 -143973214 - AluY SINE Alu -14 297 1 2398 90 0 0 chr6 38442150 38442461 -143972781 - AluY SINE Alu 0 311 1 2209 118 7 3 chr6 38442556 38442860 -143972382 + AluSx SINE Alu 1 305 -7 981 276 68 6 chr6 38442866 38443206 -143972036 - L1MB7 LINE L1 -9 6175 5815 604 207 0 62 chr6 38443230 38443375 -143971867 - L1PB4 LINE L1 0 6156 6021 453 208 0 0 chr6 38443375 38443452 -143971790 - U1 snRNA snRNA -86 79 3 1164 251 23 20 chr6 38443457 38443760 -143971482 - L1MB7 LINE L1 -343 5823 5520 2335 77 0 10 chr6 38444008 38444306 -143970936 - AluY SINE Alu -16 295 1 311 139 42 56 chr6 38444552 38444624 -143970618 - LTR66 LTR ERVL -171 439 369 720 126 42 0 chr6 38449400 38449519 -143965723 - L1MA8 LINE L1 -4 6287 6164 2195 108 10 10 chr6 38449617 38449924 -143965318 - AluSc SINE Alu -2 307 1 2383 73 3 0 chr6 38450860 38451149 -143964093 - AluY SINE Alu -21 290 1 305 336 66 7 chr6 38451675 38451812 -143963430 - MIR SINE MIR -68 194 50 2563 61 40 0 chr6 38452692 38453018 -143962224 + LTR14A LTR ERVK 6 344 0 2390 142 3 3 chr6 38453020 38453380 -143961862 + HERVK14 LTR ERVK 3 362 -5583 9923 50 3 0 chr6 38454958 38456127 -143959115 + HERVK14 LTR ERVK 1828 2999 -2946 * 11415 61 16 10 chr6 38456126 38457561 -143957681 + HERVK14 LTR ERVK 4416 5859 -86 2922 35 21 3 chr6 38457580 38457918 -143957324 + LTR14A LTR ERVK 1 344 0 381 291 103 12 chr6 38457992 38458157 -143957085 + MIR SINE MIR 8 187 -75 1915 151 3 0 chr6 38458290 38458582 -143956660 + AluSg SINE Alu 1 293 -17 2250 98 0 14 chr6 38459262 38459557 -143955685 - AluY SINE Alu -20 291 1 23 0 0 0 chr6 38459826 38459849 -143955393 + AT_rich Low_complexity Low_complexity 1 23 0 336 325 75 86 chr6 38461405 38461762 -143953480 - L2 LINE L2 -251 3062 2715 2244 118 7 0 chr6 38461797 38462103 -143953139 - AluSx SINE Alu -4 308 1 2004 91 8 0 chr6 38462158 38462421 -143952821 + AluSc SINE Alu 32 296 -13 221 265 0 0 chr6 38462514 38462563 -143952679 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 673 206 37 101 chr6 38463041 38463087 -143952155 - MER20 DNA MER1_type -7 212 165 2534 71 3 0 chr6 38463087 38463397 -143951845 - AluY SINE Alu 0 311 1 673 206 37 101 chr6 38463397 38463539 -143951703 - MER20 DNA MER1_type -54 165 36 378 146 15 5 chr6 38464300 38464422 -143950820 + MER53 DNA DNA 1 189 0 2290 103 0 6 chr6 38464554 38464865 -143950377 + AluY SINE Alu 1 309 -2 186 289 113 21 chr6 38465056 38465198 -143950044 + MIR SINE MIR 90 244 -18 974 308 114 62 chr6 38465954 38466849 -143948393 + L2 LINE L2 1813 2808 -505 1828 129 68 10 chr6 38466849 38467144 -143948098 + AluSq SINE Alu 1 312 -1 974 308 114 62 chr6 38467144 38467677 -143947565 + L2 LINE L2 2808 3312 -1 1481 199 14 3 chr6 38467903 38468190 -143947052 + AluJb SINE Alu 3 292 -20 257 221 13 0 chr6 38468467 38468544 -143946698 + MER116 DNA Mariner 2 79 -1 2262 115 3 0 chr6 38468653 38468957 -143946285 - AluSg SINE Alu -5 305 1 10468 157 23 41 chr6 38469980 38470018 -143945224 - L1P LINE L1 -4208 1938 1901 6949 59 5 5 chr6 38470018 38471615 -143943627 - L1PA6 LINE L1 -5 6149 4522 10468 157 23 41 chr6 38471615 38473526 -143941716 - L1P LINE L1 -4245 1901 25 2064 134 0 0 chr6 38474050 38474348 -143940894 + AluY SINE Alu 1 298 -13 23 0 0 0 chr6 38474576 38474599 -143940643 + AT_rich Low_complexity Low_complexity 1 23 0 273 381 35 17 chr6 38474933 38475106 -143940136 - MIR SINE MIR -19 243 68 2143 207 65 11 chr6 38475140 38475618 -143939624 - LTR22 LTR ERVK -5 504 1 815 149 57 0 chr6 38476677 38476929 -143938313 + AluJb SINE Alu 163 422 0 4675 184 141 62 chr6 38477252 38478532 -143936710 + MER52A LTR ERV1 371 1751 -4 2016 152 29 37 chr6 38478539 38478915 -143936327 + THE1C LTR MaLR 3 375 0 349 138 15 0 chr6 38479261 38479326 -143935916 + LTR60 LTR ERV1 1 66 -520 961 256 46 14 chr6 38479505 38479786 -143935456 + LTR43 LTR ERV1 173 462 -140 510 161 0 0 chr6 38480376 38480463 -143934779 - AluSc SINE Alu -3 306 220 1959 129 7 0 chr6 38480519 38480805 -143934437 + AluSc SINE Alu 21 308 -1 233 335 113 27 chr6 38481094 38481279 -143933963 + MIR SINE MIR 36 236 -26 1260 178 34 34 chr6 38481591 38481860 -143933382 - L1MC2 LINE L1 -16 6328 6060 2119 193 33 38 chr6 38481860 38481924 -143933318 + LOR1b LTR ERV1 2 65 -396 2200 87 0 7 chr6 38481924 38482241 -143933001 - AluY SINE Alu 0 311 1 2119 193 33 38 chr6 38482241 38482628 -143932614 + LOR1b LTR ERV1 65 451 -10 245 171 0 0 chr6 38482628 38482663 -143932579 + LOR1a LTR ERV1 461 495 -2 2803 173 19 0 chr6 38482667 38483154 -143932088 - L1MC2 LINE L1 -282 6062 5567 1749 109 79 19 chr6 38483154 38483419 -143931823 + MER51A LTR ERV1 1 281 -353 21 0 0 0 chr6 38483607 38483628 -143931614 + AT_rich Low_complexity Low_complexity 1 21 0 4482 172 33 14 chr6 38483715 38483972 -143931270 - L1MC2 LINE L1 -25 6319 6068 2049 200 61 25 chr6 38483972 38484417 -143930825 + LOR1b LTR ERV1 1 461 0 4482 172 33 14 chr6 38484417 38484998 -143930244 - L1MC2 LINE L1 -276 6068 5465 3663 232 83 48 chr6 38485011 38486180 -143929062 - L1MD2 LINE L1 -2 6357 5231 209 33 33 0 chr6 38486180 38486210 -143929032 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3663 232 83 48 chr6 38486210 38486401 -143928841 - L1MD2 LINE L1 -1128 5231 5048 200 57 0 29 chr6 38486401 38486436 -143928806 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3663 232 83 48 chr6 38486436 38487072 -143928170 - L1MD2 LINE L1 -1311 5048 4268 2146 279 55 8 chr6 38487080 38487193 -143928049 - L1MD2 LINE L1 -2079 4067 3961 216 0 0 0 chr6 38487193 38487217 -143928025 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2146 279 55 8 chr6 38487217 38487936 -143927306 - L1MD2 LINE L1 -2185 3961 3196 305 269 159 14 chr6 38487936 38488144 -143927098 - L1M4 LINE L1 -2713 3433 3196 1742 94 13 0 chr6 38488155 38488388 -143926854 - AluSp SINE Alu -4 309 74 6827 84 13 12 chr6 38488388 38489307 -143925935 + HERV9 LTR ERV1 5560 6479 -1920 7230 55 19 18 chr6 38489307 38490334 -143924908 - SVA Other Other -839 1384 432 1757 97 9 0 chr6 38490334 38490562 -143924680 - AluSq SINE Alu -83 230 1 362 320 67 17 chr6 38490743 38490921 -143924321 - L1MC2 LINE L1 -650 5471 5285 1106 275 42 6 chr6 38491112 38491468 -143923774 - L1MB8 LINE L1 -2 6176 5808 630 248 0 0 chr6 38491480 38491617 -143923625 - L1PB4 LINE L1 0 6156 6020 421 224 0 0 chr6 38491617 38491693 -143923549 - U1 snRNA snRNA -87 78 3 1238 245 24 3 chr6 38491698 38491996 -143923246 - L1MB8 LINE L1 -343 5823 5520 1852 162 3 0 chr6 38492056 38492352 -143922890 + AluSg SINE Alu 1 297 -13 318 277 0 32 chr6 38492737 38492831 -143922411 - L1MC4 LINE L1 -1339 6703 6613 482 308 93 24 chr6 38492838 38493127 -143922115 + MLT1L LTR MaLR 231 539 -76 647 180 16 0 chr6 38493859 38493981 -143921261 - L1MA8 LINE L1 -4 6287 6164 2380 87 0 13 chr6 38494694 38495006 -143920236 - AluSg SINE Alu -2 308 1 287 241 11 46 chr6 38495879 38495966 -143919276 - MIR SINE MIR -129 133 50 515 280 69 16 chr6 38496905 38497094 -143918148 + MIR SINE MIR 8 206 -56 23 0 0 0 chr6 38497748 38497771 -143917471 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr6 38498010 38498060 -143917182 + AT_rich Low_complexity Low_complexity 1 50 0 8085 28 1 0 chr6 38498133 38499313 -143915929 + L1PA4 LINE L1 4973 6153 -2 297 0 0 0 chr6 38499959 38499992 -143915250 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 405 0 0 0 chr6 38499991 38500036 -143915206 + (CA)n Simple_repeat Simple_repeat 1 45 0 324 393 83 8 chr6 38501037 38501279 -143913963 - L2 LINE L2 -340 2974 2715 399 290 110 40 chr6 38501488 38501915 -143913327 + Tigger4(Zombi) DNA MER2_type 332 788 -1943 2244 100 3 3 chr6 38501948 38502249 -143912993 + AluSx SINE Alu 1 301 -11 744 214 48 18 chr6 38502295 38502463 -143912779 - MER20 DNA MER1_type -10 209 37 338 176 16 5 chr6 38503242 38503364 -143911878 + MER53 DNA DNA 1 189 0 2422 70 0 20 chr6 38503451 38503752 -143911490 - AluY SINE Alu -16 295 1 204 308 105 14 chr6 38503974 38504117 -143911125 + MIR SINE MIR 89 244 -18 201 338 12 12 chr6 38504581 38504661 -143910581 + L2 LINE L2 3229 3308 -5 858 320 116 46 chr6 38504879 38505688 -143909554 + L2 LINE L2 1813 2564 -749 2248 109 0 0 chr6 38505688 38505981 -143909261 + AluY SINE Alu 1 293 -18 858 320 116 46 chr6 38505981 38506047 -143909195 + L2 LINE L2 2564 2624 -689 2219 111 16 7 chr6 38506047 38506353 -143908889 + AluSq SINE Alu 1 309 -4 858 320 116 46 chr6 38506353 38506879 -143908363 + L2 LINE L2 2624 3312 -1 1584 210 7 0 chr6 38507101 38507392 -143907850 + AluJb SINE Alu 3 295 -17 304 208 13 0 chr6 38507672 38507749 -143907493 + MER116 DNA Mariner 2 79 -1 319 294 175 19 chr6 38509152 38509312 -143905930 + MIR3 SINE MIR 20 204 -4 7751 79 8 21 chr6 38509699 38510771 -143904471 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 38510811 38510834 -143904408 + AT_rich Low_complexity Low_complexity 1 23 0 2053 133 0 20 chr6 38510959 38511259 -143903983 + AluSx SINE Alu 1 294 -18 375 130 0 24 chr6 38511610 38511682 -143903560 - Alu SINE Alu -249 51 1 22 0 0 0 chr6 38511806 38511828 -143903414 + AT_rich Low_complexity Low_complexity 1 22 0 216 244 0 0 chr6 38512081 38512126 -143903116 - L3 LINE CR1 -418 1159 1115 790 198 85 124 chr6 38512751 38513009 -143902233 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 38514271 38514299 -143900943 + AT_rich Low_complexity Low_complexity 1 28 0 2163 96 55 0 chr6 38515035 38515328 -143899914 - AluSc SINE Alu 0 309 1 539 191 29 0 chr6 38515722 38515827 -143899415 - MLT1A1 LTR MaLR -266 108 1 1138 151 0 41 chr6 38515827 38516045 -143899197 - L1 LINE L1 -786 5360 5152 1542 178 0 0 chr6 38516048 38516312 -143898930 + L1MB1 LINE L1 5867 6130 -59 391 205 0 0 chr6 38516298 38516381 -143898861 - L1 LINE L1 -3386 2760 2678 * 945 167 0 10 chr6 38516379 38516577 -143898665 + L1MA7 LINE L1 4225 4420 -1726 * 4025 160 19 44 chr6 38516561 38516691 -143898551 + L1MA7 LINE L1 4643 4775 -1516 2066 122 0 0 chr6 38516691 38516969 -143898273 + AluSg1 SINE Alu 1 278 -31 186 43 0 0 chr6 38516972 38516995 -143898247 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4025 160 19 44 chr6 38516995 38517634 -143897608 + L1MA7 LINE L1 4777 5430 -861 2207 120 0 3 chr6 38517634 38517933 -143897309 + AluSc SINE Alu 5 302 -7 4025 160 19 44 chr6 38517933 38518067 -143897175 + L1MA7 LINE L1 5430 5566 -725 1963 134 0 45 chr6 38518067 38518381 -143896861 + AluSx SINE Alu 1 300 -12 4025 160 19 44 chr6 38518381 38518688 -143896554 + L1MA7 LINE L1 5566 5879 -412 2509 71 0 0 chr6 38518688 38518996 -143896246 + AluY SINE Alu 1 308 -3 4025 160 19 44 chr6 38518996 38519367 -143895875 + L1MA7 LINE L1 5879 6291 0 204 254 30 0 chr6 38519655 38519722 -143895520 + (CATA)n Simple_repeat Simple_repeat 4 72 0 196 313 15 0 chr6 38520705 38520772 -143894470 - L2 LINE L2 -4 3309 3242 2168 134 0 0 chr6 38522267 38522572 -143892670 + AluSg SINE Alu 1 305 -5 434 241 47 61 chr6 38522618 38522830 -143892412 - L1ME3A LINE L1 0 6170 5962 238 178 0 0 chr6 38522897 38522942 -143892300 - L1ME3A LINE L1 -238 5932 5888 546 272 8 53 chr6 38522963 38523206 -143892036 + L1M4 LINE L1 4877 5108 -1038 206 280 13 53 chr6 38523811 38523886 -143891356 - L2 LINE L2 -8 3305 3234 246 273 152 0 chr6 38523936 38524035 -143891207 + L2 LINE L2 3199 3312 -1 1965 163 0 3 chr6 38524091 38524480 -143890762 + AluSx SINE Alu 1 388 0 194 264 110 0 chr6 38525677 38525768 -143889474 - MIR SINE MIR -33 229 129 2097 129 7 0 chr6 38526058 38526360 -143888882 + AluSx SINE Alu 1 304 -8 363 295 161 13 chr6 38527832 38527981 -143887261 + MIR3 SINE MIR 2 172 -36 5239 141 66 22 chr6 38528082 38528500 -143886742 + MER4D LTR ERV1 1 399 -504 2213 86 7 13 chr6 38528500 38528801 -143886441 - AluSx SINE Alu -13 299 1 5239 141 66 22 chr6 38528801 38529247 -143885995 + MER4D LTR ERV1 399 903 0 1244 156 74 12 chr6 38529247 38529479 -143885763 - Tigger2 DNA MER2_type -8 2710 2461 3903 180 53 1 chr6 38529538 38530253 -143884989 - Tigger2 DNA MER2_type -1965 753 2 21 36 0 0 chr6 38530298 38530326 -143884916 + AT_rich Low_complexity Low_complexity 1 28 0 2796 270 69 73 chr6 38531387 38532835 -143882407 + L1M4b LINE L1 75 1517 -5342 2699 159 57 74 chr6 38532835 38533364 -143881878 - MLT2B1 LTR ERVL 0 520 1 2796 270 69 73 chr6 38533364 38533444 -143881798 + L1M4b LINE L1 1517 1596 -5263 5550 85 15 6 chr6 38533444 38534159 -143881083 + LTR30 LTR ERV1 1 722 0 1822 186 8 62 chr6 38534180 38534364 -143880878 - MLT1A1 LTR MaLR 0 365 211 2997 38 0 0 chr6 38534364 38534705 -143880537 - L1PA4 LINE L1 0 6155 5815 1822 186 8 62 chr6 38534705 38534906 -143880336 - MLT1A1 LTR MaLR -154 211 1 563 155 10 0 chr6 38534910 38535013 -143880229 + L1M4b LINE L1 1611 1714 -5141 2332 84 0 0 chr6 38535518 38535825 -143879417 + AluY SINE Alu 1 307 0 264 373 8 25 chr6 38536080 38536218 -143879024 + MIR SINE MIR 8 142 -66 1770 156 21 0 chr6 38536436 38536718 -143878524 + AluSx SINE Alu 1 288 -24 286 270 69 109 chr6 38536728 38537261 -143877981 + L1ME LINE L1 4482 4993 -1153 * 1447 171 27 27 chr6 38537232 38537525 -143877717 + L1M2 LINE L1 5373 5665 -635 24 53 0 0 chr6 38537525 38537563 -143877679 + AT_rich Low_complexity Low_complexity 1 38 0 35 78 0 0 chr6 38537605 38537682 -143877560 + AT_rich Low_complexity Low_complexity 1 77 0 27 0 0 0 chr6 38537786 38537813 -143877429 + AT_rich Low_complexity Low_complexity 1 27 0 265 330 48 19 chr6 38537852 38538061 -143877181 + L1ME LINE L1 5354 5568 -602 245 333 10 0 chr6 38538098 38538194 -143877048 + L1ME LINE L1 5630 5726 -395 2018 159 62 118 chr6 38538502 38538987 -143876255 - MER66B LTR ERV1 0 486 29 1247 112 51 10 chr6 38540705 38540902 -143874340 - L1MB5 LINE L1 -9 6165 5961 291 246 16 0 chr6 38542729 38542790 -143872452 - MER2 DNA MER2_type 0 345 284 2523 50 0 20 chr6 38542814 38543117 -143872125 - AluY SINE Alu -14 297 1 378 203 25 0 chr6 38543125 38543204 -143872038 - MER2 DNA MER2_type -255 90 10 795 285 8 61 chr6 38543502 38543748 -143871494 + MIR SINE MIR 30 262 0 2420 100 3 0 chr6 38544410 38544721 -143870521 - AluSq SINE Alu -1 312 1 1906 242 82 12 chr6 38545224 38546032 -143869210 - L1MEc LINE L1 -3461 2754 1846 1211 176 23 23 chr6 38546032 38546248 -143868994 + MER20 DNA MER1_type 1 216 -3 6756 89 71 6 chr6 38546261 38546601 -143868641 - L1PA13 LINE L1 -4 6159 5842 2143 72 72 0 chr6 38546601 38546880 -143868362 - AluY SINE Alu -12 299 1 6756 89 71 6 chr6 38546880 38548094 -143867148 - L1PA13 LINE L1 -321 5842 4561 651 167 111 0 chr6 38548171 38548279 -143866963 + FLAM_A SINE Alu 1 120 -13 2280 80 0 14 chr6 38548614 38548926 -143866316 - AluY SINE Alu 0 308 1 630 268 50 10 chr6 38549434 38549673 -143865569 + MLT1H LTR MaLR 8 299 -250 426 253 17 112 chr6 38549711 38549889 -143865353 + MLT1H LTR MaLR 389 549 0 255 315 56 65 chr6 38550090 38550322 -143864920 - MIR SINE MIR -26 236 7 590 72 16 2 chr6 38550869 38551119 -143864123 + AluY SINE Alu 1 301 -11 346 292 10 0 chr6 38551633 38551729 -143863513 + MIR SINE MIR 58 154 -108 562 234 23 0 chr6 38551818 38551946 -143863296 - MER90 LTR ERV1 -2 612 482 1204 227 42 57 chr6 38551946 38552329 -143862913 - MLT2C1 LTR ERVL -18 379 3 2051 219 25 25 chr6 38552334 38552804 -143862438 - MER90 LTR ERV1 -141 473 4 2204 129 0 0 chr6 38553685 38553995 -143861247 + AluSg SINE Alu 1 310 0 22 0 0 0 chr6 38554722 38554744 -143860498 + AT_rich Low_complexity Low_complexity 1 22 0 1919 162 0 13 chr6 38555262 38555576 -143859666 + AluJo SINE Alu 1 310 -2 473 143 0 22 chr6 38555576 38555667 -143859575 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 1462 261 17 52 chr6 38556151 38556700 -143858542 + L1M4 LINE L1 2613 3141 -3005 3412 65 2 62 chr6 38556700 38557180 -143858062 + L1PA8 LINE L1 5721 6171 -1 1462 261 17 52 chr6 38557180 38557232 -143858010 + L1M4 LINE L1 3141 3193 -2953 1155 281 18 0 chr6 38557304 38557578 -143857664 - Zaphod DNA AcHobo -3670 361 83 848 302 13 15 chr6 38557744 38558274 -143856968 + SVA Other Other 858 1386 0 518 165 22 0 chr6 38558288 38558379 -143856863 + L1MD3 LINE L1 7890 7982 -13 215 324 10 0 chr6 38558482 38558584 -143856658 + (CAGAGA)n Simple_repeat Simple_repeat 6 108 0 604 236 25 127 chr6 38560636 38560950 -143854292 - LTR41 LTR ERVL -211 562 281 378 255 78 0 chr6 38560950 38561103 -143854139 + L1MCa LINE L1 1322 1486 -4940 316 214 132 13 chr6 38561225 38561384 -143853858 + L1M4 LINE L1 5222 5399 -747 501 245 78 44 chr6 38561754 38561958 -143853284 - L2 LINE L2 0 3313 3103 3611 106 43 9 chr6 38562973 38563512 -143851730 - L1MA1 LINE L1 -3 6299 5743 3933 138 7 3 chr6 38563513 38564512 -143850730 - L1MA1 LINE L1 -628 5674 4673 239 286 31 0 chr6 38564807 38564905 -143850337 - L1MC3 LINE L1 0 7785 7685 6167 61 26 79 chr6 38564925 38567109 -143848133 - SVA Other Other -518 1386 1 2644 106 20 57 chr6 38567274 38567728 -143847514 + MLT2A2 LTR ERVL 17 453 0 434 171 0 140 chr6 38567770 38567934 -143847308 + LTR41 LTR ERVL 632 772 -1 555 324 100 7 chr6 38567935 38568216 -143847026 + HAL1 LINE L1 1593 1899 -608 2422 25 7 14 chr6 38568622 38568937 -143846305 + AluY SINE Alu 1 313 0 191 302 0 0 chr6 38569307 38569350 -143845892 - L2 LINE L2 -708 2606 2564 312 278 0 21 chr6 38570056 38570153 -143845089 - HAL1 LINE L1 -968 1539 1445 596 221 107 45 chr6 38570635 38570879 -143844363 - L1M4b LINE L1 -5395 1464 1206 313 326 51 11 chr6 38570942 38571120 -143844122 - L1M4b LINE L1 -5667 1188 1004 281 218 26 122 chr6 38571174 38571330 -143843912 - L1M4b LINE L1 -5688 1171 1031 210 143 0 0 chr6 38571353 38571388 -143843854 + (TG)n Simple_repeat Simple_repeat 1 35 0 547 272 24 21 chr6 38571463 38571677 -143843565 - L1M4b LINE L1 -6341 514 91 1049 197 168 17 chr6 38571764 38572129 -143843113 - L1MEc LINE L1 -3683 2532 2154 299 139 0 0 chr6 38572214 38572277 -143842965 - Alu SINE Alu 0 300 238 446 267 121 41 chr6 38572682 38572920 -143842322 + L1MC4a LINE L1 6596 6795 -1013 2412 42 3 23 chr6 38572948 38573256 -143841986 + AluY SINE Alu 1 302 -9 386 302 55 30 chr6 38573321 38573523 -143841719 + L1M4 LINE L1 2258 2464 -3682 7593 92 5 25 chr6 38574135 38575214 -143840028 + MER11C LTR ERVK 1 1057 -14 23 0 0 0 chr6 38575254 38575277 -143839965 + AT_rich Low_complexity Low_complexity 1 23 0 2033 140 0 19 chr6 38575402 38575709 -143839533 + AluSx SINE Alu 1 301 -11 360 154 0 24 chr6 38576060 38576132 -143839110 - Alu SINE Alu -251 51 1 192 289 0 0 chr6 38576532 38576577 -143838665 - L3 LINE CR1 -418 1159 1115 21 57 0 0 chr6 38577119 38577154 -143838088 + AT_rich Low_complexity Low_complexity 1 35 0 734 202 85 124 chr6 38577213 38577471 -143837771 - MLT1A1 LTR MaLR 0 365 118 28 0 0 0 chr6 38578734 38578762 -143836480 + AT_rich Low_complexity Low_complexity 1 28 0 2172 96 55 0 chr6 38579497 38579790 -143835452 - AluSc SINE Alu 0 309 1 493 188 20 0 chr6 38580184 38580285 -143834957 - MLT1A1 LTR MaLR -262 103 1 1079 142 0 41 chr6 38580285 38580503 -143834739 - L1 LINE L1 -786 5360 5152 1437 174 0 0 chr6 38580506 38580770 -143834472 + L1MB1 LINE L1 5867 6130 -59 353 205 0 0 chr6 38580756 38580839 -143834403 - L1 LINE L1 -3386 2760 2678 * 855 167 0 10 chr6 38580837 38581035 -143834207 + L1 LINE L1 4225 4420 -1726 * 3639 159 14 25 chr6 38581019 38581149 -143834093 + L1 LINE L1 4643 4773 -1373 2083 121 0 0 chr6 38581149 38581453 -143833789 + AluSg1 SINE Alu 1 304 0 3639 159 14 25 chr6 38581453 38582087 -143833155 + L1 LINE L1 4773 5400 -746 1615 128 0 0 chr6 38582092 38582311 -143832931 + AluSc SINE Alu 5 223 -86 393 329 62 36 chr6 38582683 38582990 -143832252 - L1M4 LINE L1 -1760 4386 4072 422 358 73 22 chr6 38584546 38584859 -143830383 + L2 LINE L2 2846 3174 -139 345 47 0 0 chr6 38585299 38585342 -143829900 + (CA)n Simple_repeat Simple_repeat 2 44 0 2446 115 22 6 chr6 38585812 38586168 -143829074 + THE1B LTR MaLR 3 364 0 1343 127 32 0 chr6 38586223 38586444 -143828798 + MSTB1 LTR MaLR 152 379 -53 1202 139 87 16 chr6 38587256 38587508 -143827734 + LTR1 LTR ERV1 1 270 -515 1097 125 40 0 chr6 38587484 38587660 -143827582 + LTR1 LTR ERV1 603 785 0 * 27 49 0 0 chr6 38587792 38587833 -143827409 + AT_rich Low_complexity Low_complexity 1 41 0 2216 113 0 0 chr6 38587833 38588117 -143827125 + AluSx SINE Alu 1 284 -28 243 146 0 0 chr6 38588117 38588158 -143827084 + (TA)n Simple_repeat Simple_repeat 2 42 0 375 260 13 87 chr6 38588167 38588317 -143826925 - L2 LINE L2 -32 3281 3143 9946 84 9 0 chr6 38589150 38590514 -143824728 + HERVFH19I LTR ERV1 6344 7719 0 3418 75 34 0 chr6 38590514 38590984 -143824258 + LTR19A LTR ERV1 1 486 0 241 237 62 31 chr6 38591235 38591332 -143823910 + MIR SINE MIR 153 252 -10 342 97 56 14 chr6 38591482 38591554 -143823688 + CT-rich Low_complexity Low_complexity 3 77 0 3420 167 41 11 chr6 38591555 38591980 -143823262 - L1MB3 LINE L1 0 6183 5727 243 0 0 0 chr6 38591980 38592007 -143823235 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3420 167 41 11 chr6 38592007 38592292 -143822950 - L1MB3 LINE L1 -456 5727 5452 407 294 78 52 chr6 38592296 38592527 -143822715 + L1ME3A LINE L1 5829 6065 -105 4280 131 39 93 chr6 38593474 38594484 -143820758 - Tigger3b DNA MER2_type -276 955 1 234 310 76 32 chr6 38594529 38594687 -143820555 - L1ME LINE L1 -5507 1036 872 281 298 44 32 chr6 38594711 38594973 -143820269 - L1ME LINE L1 -5590 940 665 441 360 44 44 chr6 38595226 38595501 -143819741 - L1ME LINE L1 -6232 308 34 402 303 45 31 chr6 38595527 38596104 -143819138 - L1MEc LINE L1 -4760 1636 1052 2059 118 16 10 chr6 38596862 38597167 -143818075 + AluSc SINE Alu 1 307 -2 260 0 57 0 chr6 38597170 38597205 -143818037 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 3614 86 34 11 chr6 38597206 38597763 -143817479 - LTR19B LTR ERV1 -10 570 1 372 189 67 0 chr6 38598067 38598157 -143817085 - ORSL DNA AcHobo -179 96 1 187 309 182 9 chr6 38598249 38598359 -143816883 - L2 LINE L2 -6 3266 3138 248 316 53 45 chr6 38599727 38599860 -143815382 - L2 LINE L2 -50 3222 3089 487 83 0 0 chr6 38601092 38601164 -143814078 - MER51A LTR ERV1 -74 560 489 290 300 123 15 chr6 38603145 38603275 -143811967 + MIR SINE MIR 92 235 -27 27 0 0 0 chr6 38603301 38603328 -143811914 + AT_rich Low_complexity Low_complexity 1 27 0 1886 137 16 6 chr6 38603733 38603978 -143811264 + L1MC1 LINE L1 6013 6263 -70 1808 149 41 56 chr6 38603978 38604320 -143810922 - MER1B DNA MER1_type 0 337 1 1886 137 16 6 chr6 38604320 38604387 -143810855 + L1MC1 LINE L1 6263 6328 -5 * 7511 30 0 0 chr6 38604384 38605938 -143809304 - L1PA4 LINE L1 -5 6150 4596 2556 13 0 0 chr6 38605940 38606253 -143808989 + L1PA4 LINE L1 4275 4587 -1559 219 146 0 0 chr6 38606443 38606484 -143808758 + (TG)n Simple_repeat Simple_repeat 2 42 0 1240 176 52 29 chr6 38606879 38607151 -143808091 + AluJo SINE Alu 5 282 -30 216 0 0 0 chr6 38607154 38607178 -143808064 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 271 224 53 0 chr6 38607365 38607441 -143807801 + L1MC5 LINE L1 7384 7463 -498 337 39 19 19 chr6 38607457 38607509 -143807733 + (GAGAA)n Simple_repeat Simple_repeat 5 56 0 417 226 78 39 chr6 38607585 38607789 -143807453 + L1MC5 LINE L1 7641 7852 -109 214 290 48 16 chr6 38608198 38608260 -143806982 - L2 LINE L2 -75 3197 3134 307 259 41 95 chr6 38608936 38609083 -143806159 + HAL1b LINE L1 748 886 -462 838 271 30 27 chr6 38609192 38609491 -143805751 - LTR16A LTR ERVL -129 321 22 2039 115 0 0 chr6 38609602 38609871 -143805371 - AluSg SINE Alu -37 273 5 3277 141 64 31 chr6 38609911 38610347 -143804895 + L1MA7 LINE L1 5594 6014 -277 1699 167 32 0 chr6 38610347 38610629 -143804613 + AluJb SINE Alu 1 291 -21 3277 141 64 31 chr6 38610629 38610710 -143804532 + L1MA7 LINE L1 6014 6091 -200 1314 210 52 6 chr6 38610710 38611039 -143804203 + MER2 DNA MER2_type 1 344 0 3277 141 64 31 chr6 38611039 38611194 -143804048 + L1MA7 LINE L1 6091 6289 -2 234 139 0 0 chr6 38613015 38613051 -143802191 + MLT1K LTR MaLR 142 177 -411 252 77 0 0 chr6 38613109 38613148 -143802094 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr6 38613247 38613270 -143801972 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 23006 165 12 24 chr6 38613370 38617585 -143797657 + L1PA10 LINE L1 315 4579 -1904 8150 61 7 0 chr6 38617585 38618547 -143796695 - LTR5 LTR ERVK 0 969 1 23006 165 12 24 chr6 38618547 38619877 -143795365 + L1PA10 LINE L1 4579 5924 -559 2754 82 3 0 chr6 38619877 38620231 -143795011 - THE1A LTR MaLR 0 355 1 11588 93 4 22 chr6 38620231 38620563 -143794679 - THE1A-int LTR MaLR 0 1580 1244 2294 110 0 3 chr6 38620563 38620872 -143794370 - AluY SINE Alu -3 308 1 11588 93 4 22 chr6 38620872 38622148 -143793094 - THE1A-int LTR MaLR -336 1244 1 2647 93 6 0 chr6 38622148 38622501 -143792741 - THE1A LTR MaLR 0 355 1 23006 165 12 24 chr6 38622501 38623003 -143792239 + L1PA10 LINE L1 5921 6461 -22 204 40 0 0 chr6 38623003 38623028 -143792214 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 2884 147 12 10 chr6 38623046 38623158 -143792084 - L1MA7 LINE L1 -350 5941 5831 1087 174 43 135 chr6 38623158 38623670 -143791572 + MER4C LTR ERV1 1 465 0 2884 147 12 10 chr6 38623670 38624068 -143791174 - L1MA7 LINE L1 -460 5831 5430 181 200 0 0 chr6 38626330 38626365 -143788877 - MIR SINE MIR -27 235 201 1961 246 74 4 chr6 38626472 38627000 -143788242 + Zaphod DNA AcHobo 83 647 -3384 239 360 11 0 chr6 38627000 38627089 -143788153 - MIR SINE MIR -117 145 56 248 309 36 0 chr6 38630032 38630116 -143785126 + L2 LINE L2 3227 3313 0 2592 55 0 3 chr6 38630340 38630652 -143784590 - AluY SINE Alu 0 311 1 1193 178 34 34 chr6 38633787 38634056 -143781186 - L1MC2 LINE L1 -16 6328 6060 2114 193 33 38 chr6 38634056 38634120 -143781122 + LOR1b LTR ERV1 2 65 -396 2225 87 0 7 chr6 38634120 38634432 -143780810 - AluY SINE Alu 0 311 1 2114 193 33 38 chr6 38634432 38634819 -143780423 + LOR1b LTR ERV1 65 451 -10 266 143 0 0 chr6 38634819 38634854 -143780388 + LOR1a LTR ERV1 461 495 -2 2798 170 19 0 chr6 38634858 38635345 -143779897 - L1MC2 LINE L1 -282 6062 5567 1750 109 79 19 chr6 38635345 38635610 -143779632 + MER51A LTR ERV1 1 281 -353 21 0 0 0 chr6 38635798 38635819 -143779423 + AT_rich Low_complexity Low_complexity 1 21 0 4435 173 33 14 chr6 38635906 38636163 -143779079 - L1MC2 LINE L1 -25 6319 6068 1899 202 61 25 chr6 38636163 38636608 -143778634 + LOR1b LTR ERV1 1 461 0 4435 173 33 14 chr6 38636608 38637189 -143778053 - L1MC2 LINE L1 -276 6068 5465 3638 242 137 37 chr6 38637202 38638372 -143776870 - L1MD2 LINE L1 -2 6357 5305 209 33 33 0 chr6 38638372 38638402 -143776840 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3638 242 137 37 chr6 38638402 38638593 -143776649 - L1MD2 LINE L1 -1054 5305 5134 200 57 0 29 chr6 38638593 38638628 -143776614 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3638 242 137 37 chr6 38638628 38639385 -143775857 - L1MD2 LINE L1 -1225 5134 4454 216 0 0 0 chr6 38639385 38639409 -143775833 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3638 242 137 37 chr6 38639409 38640129 -143775113 - L1MD2 LINE L1 -1905 4454 3196 304 257 83 7 chr6 38640193 38640337 -143774905 - L1M4 LINE L1 -2796 3350 3196 1741 95 13 0 chr6 38640348 38640580 -143774662 - AluSp SINE Alu -5 308 74 8971 87 10 23 chr6 38640580 38641499 -143773743 + HERV9 LTR ERV1 5560 6459 -1940 11438 46 13 9 chr6 38641499 38642877 -143772365 - SVA Other Other -1 1385 2 8971 87 10 23 chr6 38642877 38643212 -143772030 + HERV9 LTR ERV1 6459 6797 -1602 2343 96 0 16 chr6 38643381 38643693 -143771549 - AluSg SINE Alu -3 307 1 331 320 67 17 chr6 38643874 38644052 -143771190 - L1MC2 LINE L1 -650 5471 5285 1070 275 42 6 chr6 38644243 38644599 -143770643 - L1MB8 LINE L1 -2 6176 5808 602 248 0 0 chr6 38644611 38644748 -143770494 - L1PB4 LINE L1 0 6156 6020 412 224 0 0 chr6 38644748 38644824 -143770418 - U1 snRNA snRNA -87 78 3 1217 245 24 3 chr6 38644829 38645127 -143770115 - L1MB8 LINE L1 -343 5823 5520 1840 166 3 0 chr6 38645187 38645482 -143769760 + AluSg SINE Alu 1 296 -14 233 221 26 0 chr6 38645892 38645969 -143769273 + L1MC4 LINE L1 6610 6688 -1354 476 308 93 24 chr6 38645978 38646267 -143768975 + MLT1L LTR MaLR 231 539 -76 608 158 17 0 chr6 38646994 38647114 -143768128 - L1MA8 LINE L1 -4 6287 6166 360 133 0 0 chr6 38647839 38647899 -143767343 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2487 70 3 0 chr6 38647900 38648198 -143767044 - AluSg SINE Alu -11 299 1 270 246 14 0 chr6 38649088 38649157 -143766085 - MIR SINE MIR -139 123 54 492 278 63 21 chr6 38650100 38650291 -143764951 + MIR SINE MIR 8 206 -56 333 100 0 0 chr6 38651948 38651998 -143763244 + (TC)n Simple_repeat Simple_repeat 2 51 0 351 0 0 0 chr6 38651998 38652037 -143763205 + (CA)n Simple_repeat Simple_repeat 1 39 0 251 375 31 6 chr6 38653188 38653348 -143761894 - L2 LINE L2 -436 2878 2715 235 245 0 0 chr6 38653517 38653566 -143761676 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 308 298 102 39 chr6 38653618 38653980 -143761262 + Tigger4(Zombi) DNA MER2_type 404 788 -1943 2033 117 24 3 chr6 38654013 38654311 -143760931 + AluSx SINE Alu 1 304 -8 871 174 56 28 chr6 38654354 38654532 -143760710 - MER20 DNA MER1_type -7 212 30 358 183 15 5 chr6 38655306 38655428 -143759814 + MER53 DNA DNA 1 189 0 455 307 161 41 chr6 38656589 38657418 -143757824 + L2 LINE L2 1776 2721 -593 2239 110 0 0 chr6 38657418 38657709 -143757533 + AluY SINE Alu 1 291 -20 455 307 161 41 chr6 38657709 38657775 -143757467 + L2 LINE L2 2721 2778 -536 2158 126 0 10 chr6 38657775 38658077 -143757165 + AluSq SINE Alu 1 299 -14 8974 27 1 0 chr6 38658077 38659124 -143756118 - L1PA3 LINE L1 -1244 4902 3855 7817 21 0 13 chr6 38659124 38660382 -143754860 + L1PA3 LINE L1 4910 6155 0 243 0 0 0 chr6 38660402 38660429 -143754813 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 485 337 70 47 chr6 38660429 38660964 -143754278 + L2 LINE L2 2768 3312 -1 1629 192 10 3 chr6 38661189 38661480 -143753762 + AluJb SINE Alu 3 295 -17 293 208 13 0 chr6 38661760 38661837 -143753405 + MER116 DNA Mariner 2 79 -1 248 309 36 0 chr6 38667299 38667383 -143747859 - L2 LINE L2 0 3313 3227 216 230 55 42 chr6 38668276 38668441 -143746801 + (CCCGG)n Simple_repeat Simple_repeat 4 170 0 2015 245 82 4 chr6 38670426 38670949 -143744293 - Zaphod DNA AcHobo -3370 661 98 7937 65 12 5 chr6 38671092 38672092 -143743150 + LTR13 LTR ERVK 1 1007 0 206 231 0 0 chr6 38672135 38672174 -143743068 + CT-rich Low_complexity Low_complexity 2 40 0 3101 147 12 10 chr6 38674368 38674766 -143740476 + L1MA7 LINE L1 5430 5831 -460 1195 171 43 137 chr6 38674766 38675279 -143739963 - MER4C LTR ERV1 0 465 1 3101 147 12 10 chr6 38675279 38675391 -143739851 + L1MA7 LINE L1 5831 5941 -350 23175 163 13 24 chr6 38675395 38675941 -143739301 - L1PA10 LINE L1 0 6483 5932 2659 99 6 0 chr6 38675941 38676294 -143738948 + THE1A LTR MaLR 1 355 0 11796 91 4 22 chr6 38676294 38677570 -143737672 + THE1A-int LTR MaLR 1 1244 -336 2319 107 0 3 chr6 38677570 38677879 -143737363 + AluY SINE Alu 1 308 -3 11796 91 4 22 chr6 38677879 38678211 -143737031 + THE1A-int LTR MaLR 1244 1580 0 2818 79 3 0 chr6 38678211 38678565 -143736677 + THE1A LTR MaLR 1 355 0 23175 163 13 24 chr6 38678565 38679895 -143735347 - L1PA10 LINE L1 -549 5934 4591 8115 62 7 0 chr6 38679895 38680857 -143734385 + LTR5 LTR ERVK 1 969 0 23175 163 13 24 chr6 38680857 38685198 -143730044 - L1PA10 LINE L1 -1892 4591 198 8384 53 1 0 chr6 38685198 38686163 -143729079 + LTR5 LTR ERVK 1 966 -3 23175 163 13 24 chr6 38686163 38686356 -143728886 - L1PA10 LINE L1 -6285 198 4 242 264 0 98 chr6 38686356 38686403 -143728839 - L1 LINE L1 -841 5305 5255 593 212 0 61 chr6 38686403 38686535 -143728707 - FLAM_A SINE Alu -7 126 3 242 264 0 98 chr6 38686535 38686650 -143728592 - L1 LINE L1 -891 5255 5159 269 196 0 0 chr6 38686852 38686898 -143728344 + L2 LINE L2 2608 2653 -661 * 416 287 52 29 chr6 38686876 38687050 -143728192 + MIR SINE MIR 56 235 -27 34 0 0 0 chr6 38687051 38687085 -143728157 + AT_rich Low_complexity Low_complexity 1 34 0 1741 136 0 4 chr6 38687085 38687357 -143727885 - L1PB3 LINE L1 -2 6152 5882 1440 208 11 3 chr6 38687357 38687704 -143727538 - L1 LINE L1 -980 5166 4817 612 204 19 31 chr6 38687662 38687824 -143727418 + L1MD2 LINE L1 6183 6342 -17 * 229 240 42 52 chr6 38687892 38687988 -143727254 + L1MEc LINE L1 1136 1230 -5166 1711 176 0 0 chr6 38688035 38688297 -143726945 - AluJb SINE Alu -26 286 25 562 282 35 4 chr6 38688319 38688578 -143726664 - L1MCa LINE L1 -5228 1198 932 1426 210 9 59 chr6 38688580 38688904 -143726338 - MER70B LTR ERVL 0 578 271 267 336 15 7 chr6 38689081 38689218 -143726024 + HERVL LTR ERVL 3354 3491 -2163 1898 189 26 0 chr6 38689327 38689677 -143725565 + MER54A LTR ERVL 4 362 -539 937 182 118 94 chr6 38689686 38690016 -143725226 + MLT1A1 LTR MaLR 28 365 0 791 266 35 21 chr6 38690162 38690452 -143724790 - HERVL LTR ERVL -1212 4442 4149 345 211 13 0 chr6 38690462 38690538 -143724704 - MER54A LTR ERVL -823 78 2 326 294 28 7 chr6 38690909 38691070 -143724172 + MLT1J2 LTR MaLR 285 446 0 261 0 0 0 chr6 38691749 38691778 -143723464 + (A)n Simple_repeat Simple_repeat 1 29 0 1797 164 18 12 chr6 38692333 38692669 -143722573 - MER44D DNA MER2_type -1 608 1 22 0 0 0 chr6 38693410 38693432 -143721810 + AT_rich Low_complexity Low_complexity 1 22 0 809 204 88 25 chr6 38693641 38693881 -143721361 - MLT1E3 LTR MaLR 0 624 370 435 324 39 10 chr6 38693881 38694088 -143721154 + L1MEc LINE L1 2503 2715 -3500 212 0 36 0 chr6 38694170 38694198 -143721044 + (CATTA)n Simple_repeat Simple_repeat 2 30 0 31 20 0 20 chr6 38694204 38694223 -143721019 + AT_rich Low_complexity Low_complexity 1 19 -29 2085 121 7 7 chr6 38694223 38694513 -143720729 + AluSx SINE Alu 1 290 -22 31 20 0 20 chr6 38694513 38694542 -143720700 + AT_rich Low_complexity Low_complexity 19 48 0 484 299 52 28 chr6 38694615 38694823 -143720419 - L1M4 LINE L1 -3500 2646 2444 1863 176 7 0 chr6 38694823 38695129 -143720113 - AluJb SINE Alu -4 308 1 484 299 52 28 chr6 38695129 38695425 -143719817 - L1M4 LINE L1 -3702 2444 2130 2787 10 0 0 chr6 38696104 38696408 -143718834 - AluYa5 SINE Alu -6 305 2 293 219 168 17 chr6 38696991 38697110 -143718132 + L1MC4 LINE L1 7780 7916 -126 25 31 0 0 chr6 38697191 38697223 -143718019 + AT_rich Low_complexity Low_complexity 1 32 0 1741 28 0 9 chr6 38697223 38697435 -143717807 - L1PA5 LINE L1 -9 6145 5936 2235 92 10 0 chr6 38697704 38697996 -143717246 - AluSq SINE Alu -18 295 1 326 291 54 14 chr6 38698003 38698151 -143717091 + L1ME4a LINE L1 5767 5920 -201 521 141 0 0 chr6 38698503 38698581 -143716661 - FLAM_C SINE Alu -33 110 33 7978 158 18 62 chr6 38698581 38700522 -143714720 + L1MEc LINE L1 2849 4703 -1512 2282 116 0 3 chr6 38800551 38800862 -143614380 - AluSg SINE Alu 0 310 1 2305 79 20 10 chr6 38801485 38801777 -143613465 + AluSx SINE Alu 3 297 -15 594 126 202 0 chr6 38802317 38802436 -143612806 + MER7A DNA MER2_type 2 142 -204 1557 170 13 33 chr6 38802448 38802754 -143612488 - AluJb SINE Alu -7 305 6 1957 139 30 26 chr6 38802960 38803263 -143611979 + AluSx SINE Alu 1 304 -8 682 174 19 68 chr6 38803433 38803594 -143611648 - FAM SINE Alu -9 40 1 956 171 15 68 chr6 38803648 38803693 -143611549 - Tigger3(Golem) DNA MER2_type 0 3029 2983 2295 116 0 0 chr6 38803693 38804004 -143611238 - AluSx SINE Alu -1 311 1 956 171 15 68 chr6 38804004 38804163 -143611079 - Tigger3(Golem) DNA MER2_type -46 2983 2836 2146 106 6 58 chr6 38804169 38804498 -143610744 + AluSx SINE Alu 1 312 0 2193 112 0 40 chr6 38804500 38804822 -143610420 + AluSg SINE Alu 1 309 -1 1508 179 11 11 chr6 38805116 38805389 -143609853 - AluJo SINE Alu -13 299 27 1679 127 104 4 chr6 38805389 38805657 -143609585 + AluJb SINE Alu 1 295 -17 226 189 0 0 chr6 38805657 38805694 -143609548 - AluJo SINE Alu -266 37 1 252 0 0 0 chr6 38805850 38805878 -143609364 + (A)n Simple_repeat Simple_repeat 1 28 0 2313 96 0 0 chr6 38806210 38806503 -143608739 - AluSx SINE Alu -19 293 1 1850 167 3 7 chr6 38806538 38806838 -143608404 + AluJb SINE Alu 11 309 -3 1852 159 0 3 chr6 38806840 38807123 -143608119 - AluJb SINE Alu -30 282 1 2328 92 3 0 chr6 38807532 38807824 -143607418 + AluSc SINE Alu 3 295 -14 2266 108 0 0 chr6 38807899 38808194 -143607048 + AluSg SINE Alu 1 295 -15 1686 172 17 33 chr6 38808418 38808720 -143606522 - AluJo SINE Alu -15 297 1 2329 110 0 3 chr6 38808796 38809097 -143606145 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr6 38809115 38809138 -143606104 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 931 150 0 27 chr6 38809142 38809289 -143605953 - AluSq SINE Alu -63 250 108 1488 182 18 36 chr6 38809389 38809669 -143605573 - AluJo SINE Alu -37 275 1 2087 83 4 0 chr6 38809853 38810107 -143605135 - AluSp SINE Alu -38 275 21 2303 105 7 3 chr6 38810265 38810571 -143604671 + AluSq SINE Alu 1 307 -6 1662 156 49 4 chr6 38810571 38810709 -143604533 - AluSx SINE Alu -37 275 145 423 0 0 0 chr6 38810709 38810756 -143604486 + (TG)n Simple_repeat Simple_repeat 2 48 0 344 58 0 19 chr6 38810755 38810807 -143604435 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 1662 156 49 4 chr6 38810756 38810930 -143604312 - AluSx SINE Alu -167 145 1 203 51 26 51 chr6 38810932 38810971 -143604271 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 269 214 167 48 chr6 38811115 38811241 -143604001 + MLT1H LTR MaLR 263 403 -146 2415 91 7 0 chr6 38811244 38811553 -143603689 + AluSp SINE Alu 1 311 -2 1461 225 34 96 chr6 38811631 38812160 -143603082 - LTR8 LTR ERV1 0 691 196 333 61 20 0 chr6 38812149 38812198 -143603044 + AluJ SINE Alu 87 136 -166 * 766 190 0 25 chr6 38812198 38812356 -143602886 + AluJ SINE Alu 137 290 -12 1835 117 36 22 chr6 38812363 38812637 -143602605 + AluSp SINE Alu 1 278 -35 2151 93 11 4 chr6 38812638 38812943 -143602299 + AluY SINE Alu 2 308 0 2090 114 17 10 chr6 38813036 38813334 -143601908 - AluSx SINE Alu -8 304 5 1423 201 37 8 chr6 38813367 38813635 -143601607 + AluJo SINE Alu 13 288 -24 2075 142 7 0 chr6 38813748 38814036 -143601206 + AluSx SINE Alu 2 291 -21 2238 89 31 3 chr6 38814478 38814770 -143600472 + AluSx SINE Alu 1 300 -12 1786 154 10 36 chr6 38814913 38815218 -143600024 + AluJo SINE Alu 1 297 -15 1032 227 50 78 chr6 38815239 38815318 -143599924 + MLT1H LTR MaLR 1 81 -468 2393 60 40 3 chr6 38815318 38815616 -143599626 - AluY SINE Alu -1 310 2 1032 227 50 78 chr6 38815616 38815742 -143599500 + MLT1H LTR MaLR 81 209 -340 2457 76 0 7 chr6 38815742 38816046 -143599196 + AluSp SINE Alu 1 302 -11 1032 227 50 78 chr6 38816046 38816200 -143599042 + MLT1H LTR MaLR 209 351 -198 995 159 17 23 chr6 38816230 38816406 -143598836 - AluJ SINE Alu -4 308 134 207 308 137 17 chr6 38816407 38816524 -143598718 + MIR SINE MIR 118 248 -14 1951 154 0 19 chr6 38816535 38816710 -143598532 - AluJo SINE Alu -5 307 130 405 0 0 0 chr6 38816710 38816755 -143598487 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2164 107 18 0 chr6 38816756 38816910 -143598332 - AluSx SINE Alu -26 286 123 243 0 0 0 chr6 38816910 38816937 -143598305 + (TG)n Simple_repeat Simple_repeat 2 28 0 2164 107 18 0 chr6 38816937 38817063 -143598179 - AluSx SINE Alu -189 123 1 1951 154 0 19 chr6 38817063 38817196 -143598046 - AluJo SINE Alu -181 131 3 640 158 108 0 chr6 38817218 38817338 -143597904 - AluJ SINE Alu -169 133 1 2404 89 26 0 chr6 38817342 38817646 -143597596 - AluSx SINE Alu 0 312 1 319 295 30 17 chr6 38817795 38818102 -143597140 + GA-rich Low_complexity Low_complexity 1 310 0 887 289 6 17 chr6 38818119 38818299 -143596943 + AluSq SINE Alu 41 218 -95 269 120 40 0 chr6 38818299 38818349 -143596893 + GA-rich Low_complexity Low_complexity 2 53 0 1232 164 5 14 chr6 38818349 38818557 -143596685 + AluSg/x SINE Alu 107 312 0 1315 99 17 0 chr6 38818567 38818739 -143596503 + AluSq SINE Alu 120 294 -19 232 91 0 0 chr6 38818864 38818897 -143596345 + L2 LINE L2 3239 3271 -1 873 147 11 74 chr6 38818999 38819131 -143596111 - LTR54 LTR ERV1 0 510 392 2269 97 0 37 chr6 38819131 38819431 -143595811 - AluSx SINE Alu -20 292 4 873 147 11 74 chr6 38819431 38819488 -143595754 - LTR54 LTR ERV1 -118 392 333 2471 82 3 19 chr6 38819510 38819825 -143595417 - AluSp SINE Alu -3 310 1 885 143 0 0 chr6 38819825 38819951 -143595291 - FLAM_C SINE Alu -9 134 9 653 164 112 154 chr6 38819955 38820241 -143595001 - LTR54 LTR ERV1 -192 318 45 461 129 0 12 chr6 38820246 38820331 -143594911 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 973 147 35 66 chr6 38820338 38820535 -143594707 - AluJo SINE Alu -38 274 84 21 0 0 0 chr6 38820542 38820563 -143594679 + AT_rich Low_complexity Low_complexity 1 21 0 2209 86 35 0 chr6 38822150 38822440 -143592802 + AluSx SINE Alu 1 300 -12 2289 105 10 3 chr6 38823360 38823666 -143591576 - AluSp SINE Alu -5 308 1 351 179 0 0 chr6 38823865 38823932 -143591310 + (CA)n Simple_repeat Simple_repeat 1 67 0 2283 80 0 51 chr6 38823986 38824298 -143590944 + AluSg SINE Alu 1 296 -14 218 250 0 0 chr6 38825479 38825527 -143589715 + MIR SINE MIR 206 253 -9 295 250 204 72 chr6 38828593 38828745 -143586497 - MIR SINE MIR -90 172 1 2435 77 3 10 chr6 38829900 38830200 -143585042 + AluSp SINE Alu 3 300 -13 2538 73 0 10 chr6 38830201 38830515 -143584727 + AluY SINE Alu 1 311 0 389 97 0 0 chr6 38830443 38830516 -143584726 + Alu SINE Alu 240 344 0 214 94 0 0 chr6 38830516 38830548 -143584694 + (A)n Simple_repeat Simple_repeat 1 180 0 360 269 101 13 chr6 38830615 38830764 -143584478 - MIR SINE MIR -72 190 29 208 204 0 20 chr6 38830848 38830897 -143584345 - MIR SINE MIR -115 93 46 484 129 35 24 chr6 38831624 38831709 -143583533 - AluSg SINE Alu -219 91 6 350 327 106 18 chr6 38832040 38832257 -143582985 - MIR SINE MIR -10 252 17 1867 80 0 0 chr6 38832927 38833164 -143582078 + AluSg SINE Alu 62 298 -12 225 266 177 8 chr6 38834300 38834424 -143580818 - MIR SINE MIR -14 248 104 2136 99 0 7 chr6 38834436 38834729 -143580513 + AluSc SINE Alu 1 291 -18 1790 149 0 36 chr6 38834886 38835194 -143580048 + AluJo SINE Alu 1 297 -15 1390 152 51 70 chr6 38835197 38835513 -143579729 + AluJo SINE Alu 1 310 -2 2037 99 3 39 chr6 38835513 38835652 -143579590 + AluSq SINE Alu 1 143 -170 2048 61 0 11 chr6 38835652 38835915 -143579327 + AluY SINE Alu 41 300 -11 2161 109 6 0 chr6 38835917 38836228 -143579014 + AluSp SINE Alu 1 313 0 2037 99 3 39 chr6 38836228 38836397 -143578845 + AluSq SINE Alu 144 301 -12 2320 91 0 0 chr6 38836400 38836707 -143578535 + AluSc SINE Alu 1 307 -2 2272 85 3 0 chr6 38836707 38837014 -143578228 + AluY SINE Alu 1 308 -3 1698 164 13 17 chr6 38837034 38837333 -143577909 + AluJb SINE Alu 1 298 -14 632 274 62 77 chr6 38837346 38837367 -143577875 + L1MC4a LINE L1 6591 6611 -1197 207 0 0 0 chr6 38837367 38837390 -143577852 + (CA)n Simple_repeat Simple_repeat 2 24 0 632 274 62 77 chr6 38837390 38837595 -143577647 + L1MC4a LINE L1 6611 6811 -997 2118 101 23 10 chr6 38837595 38837903 -143577339 + AluSx SINE Alu 1 312 0 632 274 62 77 chr6 38837903 38838077 -143577165 + L1MC4a LINE L1 6811 6986 -822 817 153 0 28 chr6 38838201 38838345 -143576897 + FRAM SINE Alu 31 170 -6 1562 50 56 0 chr6 38838356 38838554 -143576688 + AluY SINE Alu 86 294 -17 2229 100 0 25 chr6 38838935 38839255 -143575987 - AluSx SINE Alu 0 312 1 2060 100 24 0 chr6 38839539 38839829 -143575413 + AluSx SINE Alu 1 297 -15 1826 103 58 31 chr6 38840313 38840605 -143574637 - AluSx SINE Alu -12 300 1 317 239 0 14 chr6 38841497 38841568 -143573674 - MER94 DNA DNA 0 134 65 265 300 11 33 chr6 38841577 38841667 -143573575 - MER94 DNA DNA -41 93 6 2721 130 76 102 chr6 38842119 38842275 -143572967 + MER7C DNA MER2_type 1 160 -2868 2342 82 0 13 chr6 38842275 38842591 -143572651 - AluSx SINE Alu 0 312 1 2721 130 76 102 chr6 38842591 38842614 -143572628 + MER7C DNA MER2_type 160 182 -2846 1780 152 3 23 chr6 38842614 38842924 -143572318 - AluSx SINE Alu -8 304 1 1636 151 9 66 chr6 38842925 38843093 -143572149 - AluJo SINE Alu -11 301 125 2052 125 0 7 chr6 38843093 38843396 -143571846 - AluSx SINE Alu -11 301 1 204 67 0 0 chr6 38843398 38843428 -143571814 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1873 127 8 0 chr6 38843435 38843703 -143571539 - AluSx SINE Alu -36 276 7 1636 151 9 66 chr6 38843703 38843842 -143571400 - AluJo SINE Alu -194 118 1 1199 227 115 4 chr6 38843845 38844114 -143571128 - AluJo SINE Alu -3 299 1 1780 151 9 35 chr6 38844116 38844433 -143570809 - 7SLRNA srpRNA srpRNA -11 309 1 2201 106 0 3 chr6 38844440 38844742 -143570500 - AluSg SINE Alu -9 301 1 2721 130 76 102 chr6 38844742 38845160 -143570082 + MER7C DNA MER2_type 191 600 -2 317 283 175 0 chr6 38845451 38845571 -143569671 - MIR SINE MIR -1 261 121 2090 107 0 3 chr6 38845574 38845863 -143569379 + AluSc SINE Alu 1 288 -21 2296 57 3 0 chr6 38845972 38846255 -143568987 - AluY SINE Alu -22 289 6 425 243 76 86 chr6 38846255 38846536 -143568706 - L1ME4a LINE L1 -1 6120 5843 765 147 0 52 chr6 38846536 38846672 -143568570 - FLAM_A SINE Alu -4 129 1 425 243 76 86 chr6 38846672 38846798 -143568444 - L1ME4a LINE L1 -278 5843 5717 228 35 0 0 chr6 38847430 38847459 -143567783 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2074 68 0 58 chr6 38847463 38847755 -143567487 - AluSg SINE Alu -35 275 1 207 0 0 0 chr6 38847763 38847786 -143567456 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 383 164 17 103 chr6 38847826 38847942 -143567300 - L2 LINE L2 -20 3293 3188 21 0 0 0 chr6 38848094 38848115 -143567127 + AT_rich Low_complexity Low_complexity 1 21 0 406 162 0 0 chr6 38848119 38848187 -143567055 + AluJ/FLAM SINE Alu 3 70 -242 811 224 0 0 chr6 38848187 38848356 -143566886 + AluJo/FRAM SINE Alu 138 307 -1 2316 90 0 0 chr6 38848356 38848656 -143566586 - AluSq SINE Alu -13 300 1 480 181 24 0 chr6 38848769 38848852 -143566390 + AluS SINE Alu 9 93 -220 1014 211 9 9 chr6 38849028 38849255 -143565987 + AluJo SINE Alu 75 301 -11 701 178 7 22 chr6 38849298 38849433 -143565809 - FLAM_C SINE Alu 0 133 1 1644 137 11 32 chr6 38849673 38849957 -143565285 + AluJb SINE Alu 21 298 -14 363 282 66 60 chr6 38850074 38850351 -143564891 - L1M2 LINE L1 -656 5510 5265 773 121 25 126 chr6 38850361 38850417 -143564825 - L1MB7 LINE L1 -12 6172 6112 895 130 15 0 chr6 38850417 38850548 -143564694 - FLAM_C SINE Alu 0 133 1 773 121 25 126 chr6 38850548 38850689 -143564553 - L1MB7 LINE L1 -72 6112 5995 819 96 0 17 chr6 38850689 38850804 -143564438 - AluSp/q SINE Alu -19 294 182 483 138 46 0 chr6 38850812 38850899 -143564343 - L1MB7 LINE L1 -200 5984 5894 906 157 7 0 chr6 38850899 38851039 -143564203 - FRAM SINE Alu -36 140 1 2103 107 7 7 chr6 38851209 38851518 -143563724 + AluY SINE Alu 1 309 -2 691 246 14 0 chr6 38851540 38851682 -143563560 - AluJ SINE Alu -31 281 138 1854 149 6 40 chr6 38851682 38852011 -143563231 - pTR5 LTR ERV1 -2055 383 66 274 320 16 31 chr6 38852011 38852139 -143563103 - LTR30 LTR ERV1 -80 642 517 266 0 0 0 chr6 38852139 38852170 -143563072 - pTR5 LTR ERV1 -439 1999 1969 5037 163 52 39 chr6 38852192 38853196 -143562046 - pTR5 LTR ERV1 -679 1759 743 2169 106 0 10 chr6 38853213 38853515 -143561727 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 38853515 38853540 -143561702 + AT_rich Low_complexity Low_complexity 1 25 0 931 131 0 0 chr6 38853566 38853696 -143561546 - AluJ SINE Alu -171 141 12 244 263 70 64 chr6 38853708 38853737 -143561505 - L1M2 LINE L1 -1108 5038 5011 2153 76 35 0 chr6 38853737 38854026 -143561216 - AluY SINE Alu -12 299 1 244 263 70 64 chr6 38854026 38854152 -143561090 - L1M2 LINE L1 -1135 5011 4882 2021 136 3 13 chr6 38854205 38854514 -143560728 - AluSx SINE Alu -6 306 1 622 286 15 20 chr6 38854514 38854705 -143560537 + L2 LINE L2 2878 3069 -244 651 126 0 39 chr6 38854717 38854820 -143560422 + AluJb SINE Alu 5 103 -209 848 94 6 126 chr6 38854838 38854997 -143560245 - AluSq/x SINE Alu -172 140 1 687 225 9 59 chr6 38854999 38855189 -143560053 + L2 LINE L2 3102 3281 -32 601 192 80 16 chr6 38855189 38855314 -143559928 + FLAM_A SINE Alu 1 133 0 687 225 9 59 chr6 38855314 38855345 -143559897 + L2 LINE L2 3281 3312 -1 1152 124 0 0 chr6 38855830 38855999 -143559243 - AluSq SINE Alu -11 302 134 2136 113 3 0 chr6 38855999 38856310 -143558932 - AluSp SINE Alu -1 312 1 2241 103 6 3 chr6 38856456 38856767 -143558475 - AluSx SINE Alu 0 312 1 359 175 329 7 chr6 38856770 38856907 -143558335 + MER2 DNA MER2_type 165 345 0 2288 80 0 19 chr6 38857510 38857822 -143557420 - AluY SINE Alu -5 306 1 2218 97 0 0 chr6 38857830 38858129 -143557113 - AluSc SINE Alu -9 300 2 551 220 43 35 chr6 38858321 38858462 -143556780 + LTR16C LTR ERVL 92 233 -258 651 187 114 0 chr6 38858463 38858586 -143556656 + FRAM SINE Alu 1 137 -39 2396 75 3 0 chr6 38858586 38858891 -143556351 - AluSp SINE Alu -7 306 1 2053 91 4 7 chr6 38858892 38859168 -143556074 - AluSx SINE Alu -37 275 1 1713 150 14 7 chr6 38859191 38859478 -143555764 + AluJo SINE Alu 1 289 -23 639 247 134 4 chr6 38859503 38859734 -143555508 + LTR16C LTR ERVL 231 491 0 198 351 0 0 chr6 38859864 38859941 -143555301 - MIR SINE MIR -18 244 168 2684 126 20 48 chr6 38859941 38860179 -143555063 - MSTB LTR MaLR 0 426 204 2197 102 0 7 chr6 38860179 38860474 -143554768 - AluSx SINE Alu -19 293 1 2684 126 20 48 chr6 38860474 38860673 -143554569 - MSTB LTR MaLR -222 204 1 9102 159 42 28 chr6 38860676 38860998 -143554244 - MSTB-int LTR MaLR -3 1648 1332 1956 116 3 0 chr6 38860998 38861317 -143553925 - AluSx SINE Alu 0 320 1 9102 159 42 28 chr6 38861317 38862078 -143553164 - MSTB-int LTR MaLR -319 1332 531 2102 110 3 3 chr6 38862078 38862378 -143552864 + AluSq SINE Alu 1 300 -13 9102 159 42 28 chr6 38862378 38862917 -143552325 - MSTB-int LTR MaLR -1120 531 1 2246 140 27 45 chr6 38862923 38863298 -143551944 - MSTB LTR MaLR -2 424 55 2403 79 0 0 chr6 38863298 38863601 -143551641 - AluSg SINE Alu -5 305 3 2246 140 27 45 chr6 38863601 38863626 -143551616 - MSTB LTR MaLR -371 55 31 227 289 89 11 chr6 38863639 38863729 -143551513 - MIR SINE MIR -88 174 78 1427 18 0 6 chr6 38863734 38863900 -143551342 + AluYa5 SINE Alu 1 165 -146 1772 159 27 21 chr6 38864023 38864356 -143550886 + THE1C LTR MaLR 41 375 0 2091 110 7 0 chr6 38864383 38864684 -143550558 + AluSx SINE Alu 1 303 -9 223 254 32 0 chr6 38864799 38864862 -143550380 - L2 LINE L2 -229 3043 2979 532 223 123 0 chr6 38864882 38865012 -143550230 + MIR SINE MIR 117 262 0 32 0 0 0 chr6 38865140 38865172 -143550070 + AT_rich Low_complexity Low_complexity 1 32 0 449 281 44 7 chr6 38865755 38865890 -143549352 + MIR SINE MIR 8 147 -115 317 205 26 26 chr6 38865969 38866047 -143549195 + MIR SINE MIR 76 153 -109 192 271 17 0 chr6 38866693 38866752 -143548490 + L2 LINE L2 3213 3272 0 302 268 51 54 chr6 38866875 38867136 -143548106 + LTR16C LTR ERVL 158 487 -4 272 247 14 14 chr6 38867143 38867216 -143548026 + MIR SINE MIR 59 131 -131 1281 214 34 7 chr6 38867344 38867639 -143547603 + L1MC2 LINE L1 6033 6335 -9 421 327 57 54 chr6 38868458 38868755 -143546487 + L2 LINE L2 3016 3313 0 1075 249 36 22 chr6 38870125 38870502 -143544740 + LTR33 LTR ERVL 1 452 -69 2043 122 0 3 chr6 38870502 38870797 -143544445 - AluSx SINE Alu -13 299 6 1075 249 36 22 chr6 38870797 38870869 -143544373 + LTR33 LTR ERVL 452 521 0 205 374 149 0 chr6 38870875 38870982 -143544260 - MIR SINE MIR -114 148 26 378 151 0 0 chr6 38870990 38871063 -143544179 + CT-rich Low_complexity Low_complexity 4 76 0 537 157 327 19 chr6 38872813 38872866 -143542376 - MER3 DNA MER1_type 0 209 174 1674 152 0 59 chr6 38872866 38873188 -143542054 + AluJb SINE Alu 1 303 -9 537 157 327 19 chr6 38873188 38873293 -143541949 - MER3 DNA MER1_type -35 174 2 713 164 22 60 chr6 38873299 38873482 -143541760 - MER105 DNA DNA -1 203 28 375 230 0 0 chr6 38874671 38874745 -143540497 + L2 LINE L2 3233 3306 -7 246 62 0 0 chr6 38875373 38875405 -143539837 + (TGG)n Simple_repeat Simple_repeat 2 33 0 184 224 0 24 chr6 38876520 38876605 -143538637 + GA-rich Low_complexity Low_complexity 4 86 0 441 54 0 0 chr6 38877962 38878018 -143537224 + (CA)n Simple_repeat Simple_repeat 1 56 0 180 163 0 0 chr6 38878079 38878122 -143537120 + (CCCTG)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr6 38878397 38878429 -143536813 + (GA)n Simple_repeat Simple_repeat 1 32 0 363 232 21 35 chr6 38878597 38878739 -143536503 + GA-rich Low_complexity Low_complexity 6 145 0 274 353 17 29 chr6 38878980 38879153 -143536089 + L2 LINE L2 2303 2473 -841 2234 99 3 0 chr6 38879361 38879655 -143535587 - AluSp SINE Alu -18 295 1 303 274 76 38 chr6 38880062 38880219 -143535023 + L2 LINE L2 3128 3290 -23 1771 207 34 60 chr6 38881672 38881774 -143533468 + MLT1C LTR MaLR 6 109 -358 1995 114 3 17 chr6 38881774 38882071 -143533171 + AluSq SINE Alu 1 293 -20 1771 207 34 60 chr6 38882071 38882437 -143532805 + MLT1C LTR MaLR 109 462 -5 303 312 232 28 chr6 38882453 38882606 -143532636 + L3 LINE CR1 727 848 -729 2273 106 0 0 chr6 38882606 38882907 -143532335 + AluSx SINE Alu 1 301 -11 303 312 232 28 chr6 38882907 38883176 -143532066 + L3 LINE CR1 848 1235 -342 272 197 16 134 chr6 38883157 38883284 -143531958 - MIR3 SINE MIR 0 208 97 * 244 292 45 11 chr6 38883295 38883384 -143531858 + L3 LINE CR1 1485 1576 -1 1568 85 163 60 chr6 38884121 38884404 -143530838 - AluSx SINE Alu 0 312 1 842 138 8 23 chr6 38884586 38884716 -143530526 + FLAM_C SINE Alu 3 130 -3 188 322 17 0 chr6 38884948 38885007 -143530235 + L2 LINE L2 3213 3272 0 31 26 0 0 chr6 38885497 38885535 -143529707 + GC_rich Low_complexity Low_complexity 1 38 0 246 62 0 0 chr6 38886726 38886758 -143528484 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 245 0 0 chr6 38886852 38886901 -143528341 + CT-rich Low_complexity Low_complexity 1 49 0 2178 125 0 0 chr6 38889019 38889331 -143525911 - AluJb SINE Alu 0 312 1 2141 103 10 0 chr6 38889642 38889942 -143525300 - AluSx SINE Alu -9 303 1 206 259 35 0 chr6 38890056 38890114 -143525128 - L2 LINE L2 -1067 2247 2188 207 383 9 0 chr6 38890202 38890317 -143524925 - L2 LINE L2 -1281 2033 1918 1073 244 106 29 chr6 38890332 38890709 -143524533 - MLT1C LTR MaLR -3 464 59 961 87 0 0 chr6 38892430 38892557 -143522685 - AluY SINE Alu -8 303 177 1724 88 4 28 chr6 38892557 38892808 -143522434 - AluY SINE Alu -66 245 1 1506 126 9 0 chr6 38892976 38893199 -143522043 - AluSg/x SINE Alu -3 309 85 1567 172 62 10 chr6 38893260 38893551 -143521691 + AluJb SINE Alu 1 306 -6 1797 152 14 3 chr6 38894235 38894518 -143520724 - AluJo SINE Alu -17 295 10 365 275 96 62 chr6 38895623 38895770 -143519472 - MIR SINE MIR 0 262 107 2205 75 0 0 chr6 38895770 38896048 -143519194 + AluSp SINE Alu 18 295 -18 365 275 96 62 chr6 38896048 38896078 -143519164 - MIR SINE MIR -155 107 79 375 303 77 53 chr6 38896102 38896141 -143519101 - L1M4 LINE L1 -1691 4455 4418 2034 125 7 3 chr6 38896141 38896444 -143518798 - AluSq SINE Alu -9 304 1 375 303 77 53 chr6 38896444 38896612 -143518630 - L1M4 LINE L1 -1728 4418 4243 2105 147 0 0 chr6 38896634 38896946 -143518296 - AluSx SINE Alu 0 312 1 1560 142 110 14 chr6 38896961 38897242 -143518000 - AluSg1 SINE Alu -1 308 1 2352 89 0 0 chr6 38897295 38897597 -143517645 - AluSc SINE Alu -7 302 1 1843 166 0 0 chr6 38897608 38897897 -143517345 - AluJb SINE Alu -18 294 6 718 215 19 68 chr6 38898538 38898743 -143516499 - MLT1J LTR MaLR -78 433 239 350 193 219 44 chr6 38898770 38898884 -143516358 - MER5A DNA MER1_type -7 182 49 254 299 13 13 chr6 38898901 38898978 -143516264 - MLT1J LTR MaLR -298 213 137 2356 72 0 0 chr6 38899167 38899458 -143515784 + AluSg SINE Alu 1 291 -19 2110 113 3 16 chr6 38899652 38899961 -143515281 + AluSg SINE Alu 6 310 0 2204 78 17 7 chr6 38899970 38900266 -143514976 + AluSp SINE Alu 1 299 -14 288 145 32 0 chr6 38900415 38900477 -143514765 + L1M LINE L1 5257 5320 -848 694 491 115 4 chr6 38900506 38900775 -143514467 - AluJo SINE Alu -3 299 1 396 119 59 153 chr6 38900776 38900894 -143514348 + L1MB3 LINE L1 5461 5567 -616 1792 173 27 85 chr6 38900908 38901149 -143514093 - MER21B LTR ERV1 -3 860 651 6079 36 12 14 chr6 38901149 38901892 -143513350 - SVA Other Other 0 1386 645 1792 173 27 85 chr6 38901892 38902060 -143513182 - MER21B LTR ERV1 -212 651 475 448 125 62 0 chr6 38902060 38902140 -143513102 - LTR23 LTR ERV1 0 437 353 2114 90 7 0 chr6 38902176 38902482 -143512760 - AluSg SINE Alu 0 308 1 1857 150 0 7 chr6 38902501 38902795 -143512447 - AluJo SINE Alu -14 298 7 2306 154 133 2 chr6 38902855 38903277 -143511965 - MER21B LTR ERV1 -386 477 1 2705 114 26 42 chr6 38903277 38903399 -143511843 + L1MB3 LINE L1 5561 5683 -500 2299 67 20 3 chr6 38903399 38903697 -143511545 + AluSq SINE Alu 1 303 -10 2705 114 26 42 chr6 38903697 38904031 -143511211 + L1MB3 LINE L1 5683 6010 -173 1761 174 22 63 chr6 38904031 38904089 -143511153 + MER57A LTR ERV1 7 66 -337 2160 109 3 10 chr6 38904089 38904402 -143510840 + AluSp SINE Alu 1 311 -2 1761 174 22 63 chr6 38904402 38904757 -143510485 + MER57A LTR ERV1 66 403 0 579 205 8 8 chr6 38904757 38904879 -143510363 + L1MB3 LINE L1 6006 6127 -56 2299 196 72 24 chr6 38905220 38905801 -143509441 + pTR5 LTR ERV1 734 1342 -1096 2684 246 102 106 chr6 38905813 38906638 -143508604 + LTR12 LTR ERV1 5 826 0 1971 122 3 3 chr6 38906707 38906993 -143508249 + AluSx SINE Alu 2 287 -25 2258 104 3 0 chr6 38907300 38907609 -143507633 - AluSp SINE Alu -3 310 1 1943 98 3 84 chr6 38908299 38908634 -143506608 - AluSq SINE Alu -5 308 1 2136 99 0 0 chr6 38908642 38908926 -143506316 - AluSq SINE Alu 0 313 30 1563 146 62 31 chr6 38909021 38909309 -143505933 - AluJb SINE Alu -15 297 1 983 157 13 0 chr6 38910236 38910395 -143504847 - AluJb SINE Alu -18 294 134 2188 109 3 0 chr6 38910425 38910729 -143504513 + AluSx SINE Alu 3 307 -5 2197 112 0 3 chr6 38910731 38911043 -143504199 + AluSx SINE Alu 1 311 -1 640 242 31 25 chr6 38911414 38911575 -143503667 - MER58B DNA MER1_type -1 340 179 401 46 0 62 chr6 38911678 38911743 -143503499 + AluY SINE Alu 244 304 -7 244 311 135 14 chr6 38911744 38911892 -143503350 - L2 LINE L2 -427 2887 2722 368 296 49 80 chr6 38911922 38912010 -143503232 - MIR SINE MIR -21 241 152 2053 101 3 21 chr6 38912010 38912333 -143502909 + AluSp SINE Alu 1 318 0 368 296 49 80 chr6 38912333 38912347 -143502895 - MIR SINE MIR -110 152 139 2249 85 6 16 chr6 38912347 38912663 -143502579 + AluSp SINE Alu 1 313 0 368 296 49 80 chr6 38912663 38912784 -143502458 - MIR SINE MIR -123 139 23 1347 139 33 19 chr6 38912841 38913056 -143502186 - MER20 DNA MER1_type 0 219 2 198 388 0 10 chr6 38913207 38913310 -143501932 + L2 LINE L2 2753 2854 -460 2002 84 3 51 chr6 38913755 38913901 -143501341 + AluSx SINE Alu 1 152 -220 1782 33 9 0 chr6 38913901 38914112 -143501130 + AluY SINE Alu 92 304 -7 1915 119 0 44 chr6 38914112 38914431 -143500811 + AluSc SINE Alu 1 305 -4 2002 84 3 51 chr6 38914431 38914669 -143500573 + AluSx SINE Alu 150 372 0 284 269 56 92 chr6 38914775 38915024 -143500218 + L2 LINE L2 2939 3178 -94 644 267 226 5 chr6 38915482 38915875 -143499367 + L2 LINE L2 2817 3296 -17 2101 102 3 7 chr6 38915886 38916181 -143499061 - AluSq SINE Alu -19 294 1 282 262 57 47 chr6 38916203 38916371 -143498871 - MIR3 SINE MIR -58 150 1 202 143 14 100 chr6 38916693 38916763 -143498479 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 345 212 119 46 chr6 38916854 38917005 -143498237 - MER91A DNA MER1_type 0 196 35 188 281 0 0 chr6 38917496 38917560 -143497682 - MIR SINE MIR -62 146 83 370 80 0 0 chr6 38919568 38919618 -143495624 + L1PA5 LINE L1 6105 6154 0 1992 145 0 0 chr6 38920056 38920353 -143494889 - AluJb SINE Alu -15 297 1 189 294 219 8 chr6 38920472 38920591 -143494651 - MIR3 SINE MIR -56 152 9 540 301 0 12 chr6 38920851 38921024 -143494218 - MIR3 SINE MIR -7 201 31 369 43 0 0 chr6 38921053 38921100 -143494142 + (TG)n Simple_repeat Simple_repeat 1 47 0 527 233 218 5 chr6 38921776 38921969 -143493273 + MIR SINE MIR 18 251 -11 462 313 50 35 chr6 38923208 38923409 -143491833 + L1MEd LINE L1 520 723 -5396 1490 154 55 18 chr6 38923649 38923922 -143491320 + AluJb SINE Alu 15 297 -15 233 176 0 0 chr6 38924011 38924045 -143491197 + AluSx SINE Alu 1 34 -268 4392 131 23 140 chr6 38924045 38925525 -143489717 - pTR5 LTR ERV1 0 2606 1524 1628 147 19 4 chr6 38925525 38925621 -143489621 + AluSx SINE Alu 31 124 -188 282 29 0 0 chr6 38925621 38925656 -143489586 + (CA)n Simple_repeat Simple_repeat 2 36 0 1628 147 19 4 chr6 38925656 38925818 -143489424 + AluSx SINE Alu 124 293 -19 1398 166 75 23 chr6 38925851 38926116 -143489126 + AluJb SINE Alu 11 289 -23 228 325 205 6 chr6 38926977 38927143 -143488099 + MIR SINE MIR 20 218 -44 1791 142 7 26 chr6 38927153 38927462 -143487780 - AluJo SINE Alu -6 306 4 757 297 73 29 chr6 38927566 38927848 -143487394 + L1MEd LINE L1 680 991 -5128 1607 195 0 13 chr6 38927848 38928150 -143487092 + AluJo SINE Alu 1 298 -14 757 297 73 29 chr6 38928150 38928318 -143486924 + L1MEd LINE L1 991 1150 -4969 237 306 59 0 chr6 38928355 38928440 -143486802 - L2 LINE L2 -6 3307 3218 1908 100 64 0 chr6 38928594 38928875 -143486367 + AluSg SINE Alu 12 310 0 279 369 0 0 chr6 38928878 38929027 -143486215 + HAL1 LINE L1 1460 1608 -899 389 248 98 15 chr6 38929113 38929246 -143485996 + L1MC5 LINE L1 7603 7746 -215 5649 149 121 30 chr6 38929254 38930425 -143484817 - MER52C LTR ERV1 0 1278 1 337 327 92 9 chr6 38930446 38930663 -143484579 + L1ME LINE L1 5426 5660 -510 1073 126 0 0 chr6 38930763 38930922 -143484320 - AluSp/q SINE Alu 0 313 155 313 163 0 0 chr6 38930922 38930971 -143484271 - pTR5 LTR ERV1 -1648 790 742 907 140 0 0 chr6 38930971 38931114 -143484128 + AluSg/x SINE Alu 146 288 -22 257 273 121 29 chr6 38931117 38931577 -143483665 + L1MC4 LINE L1 7253 7868 -174 2023 102 3 33 chr6 38931999 38932291 -143482951 + AluSc SINE Alu 1 285 -24 186 0 40 0 chr6 38932291 38932316 -143482926 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2023 102 3 33 chr6 38932316 38932327 -143482915 + AluSc SINE Alu 285 295 -14 1844 90 0 0 chr6 38932419 38932642 -143482600 + AluSg SINE Alu 60 282 -28 253 0 0 0 chr6 38932642 38932670 -143482572 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 572 184 40 8 chr6 38932865 38932990 -143482252 + AluY SINE Alu 5 133 -178 2157 108 0 4 chr6 38933117 38933395 -143481847 + AluSg SINE Alu 5 281 -29 291 28 0 0 chr6 38933396 38933432 -143481810 + (CA)n Simple_repeat Simple_repeat 2 37 0 843 290 10 48 chr6 38933447 38933594 -143481648 - ERVL LTR ERVL -3568 2196 2066 1551 184 20 16 chr6 38933594 38933898 -143481344 - AluJo SINE Alu -1 311 7 843 290 10 48 chr6 38933898 38934064 -143481178 - ERVL LTR ERVL -3698 2066 1895 1937 137 7 11 chr6 38934088 38934395 -143480847 - AluJb SINE Alu 0 306 1 2221 107 7 0 chr6 38934431 38934913 -143480329 - AluSg SINE Alu 0 310 1 1102 347 39 38 chr6 38935155 38936009 -143479233 - ERVL LTR ERVL -4064 1590 736 443 345 0 0 chr6 38936133 38936304 -143478938 - ERVL LTR ERVL -5148 616 446 799 163 8 0 chr6 38936317 38936440 -143478802 - FLAM_C SINE Alu -8 125 2 2188 105 10 7 chr6 38936831 38937127 -143478115 - AluSp SINE Alu -16 297 1 395 228 8 41 chr6 38937145 38937268 -143477974 - LTR41 LTR ERVL -6 767 649 597 178 8 8 chr6 38937780 38937898 -143477344 - LTR41 LTR ERVL -585 188 71 768 176 16 0 chr6 38937920 38938045 -143477197 + FLAM_A SINE Alu 1 127 -6 357 214 125 0 chr6 38938162 38938274 -143476968 + L1M4 LINE L1 4163 4288 -1858 1422 115 0 0 chr6 38938289 38938481 -143476761 - AluSq SINE Alu -3 310 119 242 254 0 0 chr6 38944285 38944344 -143470898 + C-rich Low_complexity Low_complexity 5 63 0 201 178 22 0 chr6 38944809 38944854 -143470388 + C-rich Low_complexity Low_complexity 4 49 0 238 260 20 0 chr6 38945429 38945479 -143469763 + MIR SINE MIR 40 90 -118 233 196 0 0 chr6 38947082 38947128 -143468114 + GA-rich Low_complexity Low_complexity 3 48 0 2109 108 0 11 chr6 38949106 38949414 -143465828 - AluY SINE Alu 0 305 1 2260 117 3 0 chr6 38949517 38949824 -143465418 - AluSx SINE Alu -4 308 1 887 143 0 0 chr6 38949826 38949952 -143465290 - AluJo/FLAM SINE Alu -175 127 2 333 336 0 15 chr6 38950577 38950708 -143464534 - LTR67 LTR ERVL -3 554 426 432 209 88 0 chr6 38951428 38951519 -143463723 + MIR SINE MIR 163 261 -1 4848 29 0 3 chr6 38951595 38952189 -143463053 + L1PA3 LINE L1 5296 5887 -268 1290 164 41 92 chr6 38952338 38952729 -143462513 - L1MA9 LINE L1 -187 6125 5755 * 1649 187 13 3 chr6 38952726 38953036 -143462206 + L1M2 LINE L1 5409 5721 -591 1633 143 0 123 chr6 38953049 38953193 -143462049 + AluJo SINE Alu 1 80 -232 2152 125 0 0 chr6 38953193 38953482 -143461760 - AluSx SINE Alu -9 303 15 1633 143 0 123 chr6 38953482 38953679 -143461563 + AluJo SINE Alu 80 300 -12 3136 163 54 12 chr6 38953686 38954366 -143460876 - L1MB4 LINE L1 0 6678 5772 534 70 0 0 chr6 38954370 38954441 -143460801 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1202 104 0 25 chr6 38954446 38954609 -143460633 - AluSp SINE Alu -30 283 125 339 109 0 0 chr6 38954613 38954668 -143460574 - L1MB4 LINE L1 -883 5761 5707 * 351 176 19 102 chr6 38954647 38954755 -143460487 - L1M4 LINE L1 -4968 1574 1476 1154 176 7 26 chr6 38954768 38955040 -143460202 - L1MB4 LINE L1 -941 5703 5437 * 1888 188 65 2 chr6 38955026 38955473 -143459769 - L1MB4 LINE L1 -4606 2040 1566 7829 21 0 6 chr6 38955473 38956592 -143458650 - L1PA3 LINE L1 0 6155 5041 10883 37 1 113 chr6 38956597 38958153 -143457089 - SVA Other Other -2 1384 2 263 195 0 32 chr6 38958162 38958285 -143456957 + GA-rich Low_complexity Low_complexity 3 121 0 456 203 7 22 chr6 38958286 38958424 -143456818 - L1MB4 LINE L1 -4963 1579 1444 194 0 0 37 chr6 38958425 38958452 -143456790 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 622 200 64 0 chr6 38958452 38958577 -143456665 - AluJo/FRAM SINE Alu -1 311 179 1263 167 5 0 chr6 38958577 38958775 -143456467 + AluJb SINE Alu 109 307 -5 180 307 40 69 chr6 38958877 38958978 -143456264 + L2 LINE L2 2145 2242 -1072 2389 108 0 9 chr6 38958983 38959298 -143455944 - AluSx SINE Alu 0 312 1 435 298 209 11 chr6 38959487 38959856 -143455386 + L2 LINE L2 2324 2765 -549 481 165 304 0 chr6 38960108 38960223 -143455019 + L1PA16 LINE L1 6006 6155 -11 230 171 0 0 chr6 38960231 38960272 -143454970 + MER41C LTR ERV1 386 426 -128 2221 113 0 0 chr6 38960379 38960685 -143454557 - AluSx SINE Alu 0 306 1 712 179 0 45 chr6 38960688 38960822 -143454420 - AluJo/FLAM SINE Alu -182 130 3 753 329 115 19 chr6 38960994 38961542 -143453700 - L2 LINE L2 -326 2946 2338 2166 101 45 0 chr6 38961542 38961829 -143453413 + AluSx SINE Alu 1 300 -12 753 329 115 19 chr6 38961829 38961860 -143453382 - L2 LINE L2 -934 2338 2311 514 201 75 0 chr6 38961889 38962023 -143453219 - Cheshire DNA MER1_type -2 2418 2275 998 118 20 0 chr6 38962025 38962178 -143453064 - MSTC LTR MaLR -51 377 222 3063 125 91 65 chr6 38962182 38962298 -143452944 - Cheshire DNA MER1_type -146 2274 2162 2244 107 3 3 chr6 38962298 38962598 -143452644 - AluSx SINE Alu -12 300 1 3063 125 91 65 chr6 38962598 38962770 -143452472 - Cheshire DNA MER1_type -258 2162 1996 2790 82 3 0 chr6 38962770 38963122 -143452120 + THE1A LTR MaLR 3 355 0 12160 90 5 0 chr6 38963122 38964695 -143450547 + THE1A-int LTR MaLR 1 1580 0 2567 90 17 22 chr6 38964695 38965052 -143450190 + THE1A LTR MaLR 1 355 0 3063 125 91 65 chr6 38965052 38965164 -143450078 - Cheshire DNA MER1_type -424 1996 1888 1829 145 10 24 chr6 38965164 38965453 -143449789 - AluJb SINE Alu -17 295 11 3063 125 91 65 chr6 38965453 38965721 -143449521 - Cheshire DNA MER1_type -532 1888 1585 1848 160 3 10 chr6 38965721 38966021 -143449221 + AluSx SINE Alu 1 298 -14 2205 101 6 15 chr6 38966027 38966353 -143448889 + L1PA15 LINE L1 5838 6160 -5 1982 178 0 6 chr6 38966353 38966695 -143448547 - MLT2C1 LTR ERVL -57 340 1 610 203 0 8 chr6 38966711 38966838 -143448404 - Cheshire DNA MER1_type -919 1501 1376 1143 183 193 19 chr6 38966838 38967149 -143448093 - MLT1A1 LTR MaLR 0 365 1 * 3783 174 36 38 chr6 38967149 38967932 -143447310 - Cheshire DNA MER1_type -1053 1367 584 2345 91 0 3 chr6 38967932 38968228 -143447014 - AluY SINE Alu -16 295 1 3783 174 36 38 chr6 38968228 38968269 -143446973 - Cheshire DNA MER1_type -1836 584 543 2237 105 6 26 chr6 38968269 38968582 -143446660 - AluSx SINE Alu -5 307 1 3783 174 36 38 chr6 38968582 38968608 -143446634 - Cheshire DNA MER1_type -1877 543 518 1865 179 10 0 chr6 38968611 38968918 -143446324 + AluJb SINE Alu 1 310 -2 476 59 0 0 chr6 38968941 38969009 -143446233 + L1PB1 LINE L1 6084 6151 0 693 152 25 61 chr6 38969039 38969236 -143446006 + L1MC5 LINE L1 7334 7523 -438 294 29 0 0 chr6 38969244 38969279 -143445963 + U2 snRNA snRNA 1 35 -153 854 203 13 0 chr6 38969285 38969443 -143445799 + FRAM SINE Alu 1 160 -16 375 209 6 101 chr6 38969443 38969601 -143445641 + L1MC5 LINE L1 7522 7664 -297 1693 60 0 28 chr6 38969628 38969845 -143445397 + SVA Other Other 336 546 -840 1048 203 129 0 chr6 39070977 39071218 -143344024 - LTR16C LTR ERVL -32 459 188 351 297 34 0 chr6 39071244 39071362 -143343880 - LTR16C LTR ERVL -369 122 1 321 293 19 76 chr6 39071918 39072075 -143343167 + MER5A DNA MER1_type 1 148 -41 732 191 130 125 chr6 39073225 39073626 -143341616 + LTR15 LTR ERV1 156 590 -5 19171 243 26 35 chr6 39073630 39078265 -143336977 + HERV3 LTR ERV1 1 4593 -3833 3160 249 14 8 chr6 39078297 39079012 -143336230 + HERV3 LTR ERV1 7708 8426 0 826 179 91 111 chr6 39079092 39079488 -143335754 + LTR61 LTR ERV1 208 595 0 554 254 40 45 chr6 39080062 39080239 -143335003 + MER5B DNA MER1_type 3 178 0 203 264 99 11 chr6 39080341 39080432 -143334810 - MIR3 SINE MIR -35 173 75 1125 117 13 0 chr6 39080599 39080753 -143334489 + AluSg/x SINE Alu 133 288 -24 5895 172 36 14 chr6 39081049 39082370 -143332872 + L1PA13 LINE L1 4121 5491 -672 2310 99 14 0 chr6 39082370 39082662 -143332580 - AluSx SINE Alu -16 296 1 5895 172 36 14 chr6 39082662 39083344 -143331898 + L1PA13 LINE L1 5491 6156 -7 250 222 63 0 chr6 39084423 39084486 -143330756 - LTR33A LTR ERVL 0 523 457 575 176 99 168 chr6 39085272 39085335 -143329907 - MLT1F LTR MaLR -2 565 499 243 95 119 0 chr6 39085335 39085377 -143329865 + L1MA5A LINE L1 6245 6291 -6 575 176 99 168 chr6 39085377 39085534 -143329708 - MLT1F LTR MaLR -68 499 322 * 671 254 15 63 chr6 39085533 39085738 -143329504 - MLT1F LTR MaLR -345 197 3 4020 189 54 35 chr6 39086515 39087360 -143327882 - MER21B LTR ERV1 -2 861 1 857 243 117 48 chr6 39087468 39087843 -143327399 - MLT1I LTR MaLR -8 401 1 913 270 77 51 chr6 39088261 39088754 -143326488 - LTR33 LTR ERVL -1 520 15 1624 191 124 11 chr6 39089752 39090108 -143325134 + MSTD LTR MaLR 1 396 0 315 312 104 8 chr6 39090227 39090352 -143324890 + MLT1K LTR MaLR 44 180 -408 278 206 68 14 chr6 39090638 39090711 -143324531 + MLT1K LTR MaLR 509 585 -3 243 0 0 0 chr6 39091325 39091352 -143323890 + (A)n Simple_repeat Simple_repeat 1 27 0 195 254 0 32 chr6 39093101 39093164 -143322078 + L2 LINE L2 3211 3271 -1 1658 169 32 0 chr6 39093680 39093959 -143321283 - AluJo SINE Alu -24 288 1 739 276 276 28 chr6 39094346 39094630 -143320612 - L2 LINE L2 -1 3312 3100 2190 72 0 0 chr6 39094630 39094895 -143320347 + AluY SINE Alu 21 285 -26 739 276 276 28 chr6 39094895 39095435 -143319807 - L2 LINE L2 -213 3100 2695 2188 97 20 7 chr6 39095435 39095733 -143319509 + AluSq SINE Alu 1 302 -11 739 276 276 28 chr6 39095733 39095960 -143319282 - L2 LINE L2 -618 2695 1989 183 277 31 31 chr6 39097061 39097126 -143318116 - L2 LINE L2 -381 2933 2869 486 268 154 22 chr6 39098330 39098688 -143316554 + HAL1 LINE L1 1230 1634 -873 560 257 73 14 chr6 39098691 39099089 -143316153 - LTR16B LTR ERVL 0 464 1 261 270 16 0 chr6 39099534 39099597 -143315645 + HAL1b LINE L1 819 882 -466 461 0 19 0 chr6 39099621 39099674 -143315568 - THE1A LTR MaLR -301 54 1 11972 89 6 1 chr6 39099674 39101242 -143314000 - THE1A-int LTR MaLR 0 1580 5 2355 113 11 8 chr6 39101247 39101600 -143313642 - THE1A LTR MaLR -1 354 1 625 282 171 3 chr6 39102645 39102978 -143312264 - L1MDa LINE L1 -1898 4231 3843 300 263 166 23 chr6 39102964 39103139 -143312103 - L1M4 LINE L1 -1314 4832 4633 * 373 201 127 15 chr6 39103161 39103295 -143311947 - L1M4 LINE L1 -1581 4565 4417 1988 165 39 97 chr6 39103302 39103889 -143311353 - L1MDa LINE L1 -4598 1942 1390 228 148 91 68 chr6 39103989 39104077 -143311165 - L1MDa LINE L1 -5185 1355 1266 2354 98 20 0 chr6 39104127 39104433 -143310809 - AluSx SINE Alu 0 312 1 4426 153 63 21 chr6 39104440 39105284 -143309958 - L1MB3 LINE L1 -1 6182 5304 2806 190 133 20 chr6 39105292 39105996 -143309246 - L1MDa LINE L1 -5342 1198 415 1954 131 10 22 chr6 39106074 39106386 -143308856 - AluSx SINE Alu -4 308 1 908 274 114 43 chr6 39106748 39107700 -143307542 - L1MDa LINE L1 -2993 3136 2117 398 225 109 29 chr6 39107738 39107876 -143307366 + MER104 DNA Tc2 19 167 -13 699 330 95 21 chr6 39108080 39108459 -143306783 - LTR16C LTR ERVL 0 491 85 310 208 75 28 chr6 39109019 39109125 -143306117 - L1MDa LINE L1 -4584 1545 1435 3691 112 52 2 chr6 39109127 39109698 -143305544 - HSMAR2 DNA Mariner 0 1302 703 22 0 0 0 chr6 39110668 39110690 -143304552 + AT_rich Low_complexity Low_complexity 1 22 0 331 222 179 53 chr6 39110919 39111126 -143304116 - L1MDa LINE L1 -4969 1150 918 257 311 0 52 chr6 39111622 39111757 -143303485 + LTR16C LTR ERVL 362 489 -2 2468 89 40 0 chr6 39111876 39112226 -143303016 + L1PA13 LINE L1 5795 6158 -5 686 290 77 0 chr6 39112228 39112449 -143302793 - L1MDa LINE L1 -5313 806 569 580 266 97 10 chr6 39112673 39112880 -143302362 - L1MDa LINE L1 -5878 241 17 584 332 40 20 chr6 39112925 39113037 -143302205 - MIR SINE MIR -2 260 152 1193 317 33 4 chr6 39113037 39113488 -143301754 - LTR16B LTR ERVL 0 464 1 584 332 40 20 chr6 39113488 39113628 -143301614 - MIR SINE MIR -110 152 3 22 35 0 0 chr6 39114261 39114290 -143300952 + AT_rich Low_complexity Low_complexity 1 29 0 240 273 121 0 chr6 39114580 39114679 -143300563 + MLT1J LTR MaLR 105 215 -296 324 306 55 22 chr6 39114703 39114886 -143300356 - LTR33 LTR ERVL -1 520 332 1493 214 146 0 chr6 39114993 39115376 -143299866 - L1ME1 LINE L1 -43 6123 5685 641 137 0 39 chr6 39115376 39115478 -143299764 - Tigger7 DNA MER2_type 0 2587 2490 * 1200 227 64 0 chr6 39115476 39115727 -143299515 - Tigger7 DNA MER2_type -2220 267 1 4036 193 83 55 chr6 39115727 39116841 -143298401 - L1ME1 LINE L1 -480 5686 4526 4697 102 6 0 chr6 39116841 39117488 -143297754 - L1PA12 LINE L1 0 6168 5518 4036 193 83 55 chr6 39117488 39117926 -143297316 - L1ME1 LINE L1 -1640 4526 4102 519 221 64 20 chr6 39117927 39117981 -143297261 + HsTC2 DNA Tc2 1682 1732 -166 2048 141 0 7 chr6 39117981 39118285 -143296957 + AluJb SINE Alu 3 304 -8 519 221 64 20 chr6 39118285 39118434 -143296808 + HsTC2 DNA Tc2 1732 1894 -4 205 180 40 20 chr6 39118459 39118509 -143296733 - MER91C DNA MER1_type -57 83 33 1677 257 52 15 chr6 39118698 39119157 -143296085 - LTR40a LTR ERVL -2 517 42 803 304 75 23 chr6 39119278 39119584 -143295658 + MLT1J2 LTR MaLR 1 322 -128 1102 197 5 0 chr6 39120214 39120412 -143294830 + MER58A DNA MER1_type 26 224 0 561 287 48 38 chr6 39121851 39122125 -143293117 + MLT1K LTR MaLR 2 267 -342 268 288 56 31 chr6 39122221 39122381 -143292861 + MLT1K LTR MaLR 401 564 -24 190 270 0 90 chr6 39122410 39122499 -143292743 + L2 LINE L2 1352 1432 -1882 1923 136 25 7 chr6 39122636 39122922 -143292320 - AluSx SINE Alu -21 291 1 237 299 117 45 chr6 39123096 39123497 -143291745 - L2 LINE L2 -1015 2299 1870 366 300 112 54 chr6 39123565 39124029 -143291213 - LTR16C LTR ERVL 0 491 1 488 115 39 13 chr6 39124441 39124519 -143290723 - MADE1 DNA Mariner 0 80 1 996 243 110 36 chr6 39126074 39126411 -143288831 - MLT1A1 LTR MaLR -3 362 1 692 258 74 9 chr6 39126422 39126651 -143288591 - MIR SINE MIR -16 246 3 907 228 137 82 chr6 39127292 39127780 -143287462 - LTR33 LTR ERVL 0 521 7 410 238 133 93 chr6 39128017 39128341 -143286901 + MER46C DNA MER2_type 1 337 -1 1083 94 22 0 chr6 39128392 39128530 -143286712 - AluSq/x SINE Alu -162 150 10 792 149 0 8 chr6 39128530 39128664 -143286578 + AluSp/q SINE Alu 177 309 -4 2084 121 0 29 chr6 39128675 39128982 -143286260 + AluSq SINE Alu 2 299 -14 272 274 43 60 chr6 39129257 39129374 -143285868 + MIR SINE MIR 8 122 -140 273 231 84 56 chr6 39129406 39129599 -143285643 - MIR3 SINE MIR -60 148 3 463 273 87 31 chr6 39130054 39130215 -143285027 - LTR33 LTR ERVL -329 192 23 2399 217 74 6 chr6 39130350 39130875 -143284367 - MLT1F1 LTR MaLR -6 561 1 376 165 10 87 chr6 39131725 39131772 -143283470 - Charlie1b DNA MER1_type -2238 523 487 2092 154 0 20 chr6 39131772 39132116 -143283126 + MER1B DNA MER1_type 1 337 0 376 165 10 87 chr6 39132116 39132171 -143283071 - Charlie1b DNA MER1_type -2274 487 429 889 138 152 33 chr6 39132190 39132421 -143282821 - L1MA8 LINE L1 -3 6288 6042 1367 181 86 26 chr6 39132426 39132734 -143282508 - Charlie1b DNA MER1_type -2327 434 101 2608 53 0 0 chr6 39132734 39133036 -143282206 - AluY SINE Alu -8 303 2 1367 181 86 26 chr6 39133036 39133075 -143282167 - Charlie1b DNA MER1_type -2660 101 66 1142 240 58 58 chr6 39133398 39133613 -143281629 + MLT1I LTR MaLR 81 298 -111 1970 189 89 5 chr6 39133613 39134005 -143281237 + MSTB LTR MaLR 2 426 0 1142 240 58 58 chr6 39134005 39134118 -143281124 + MLT1I LTR MaLR 297 409 0 1766 168 171 23 chr6 39134120 39134518 -143280724 - MSTB2 LTR MaLR 0 457 1 225 323 110 16 chr6 39134554 39134681 -143280561 - L2 LINE L2 -7 3306 3168 686 269 114 67 chr6 39134850 39135281 -143279961 - LTR33 LTR ERVL -70 451 1 564 272 78 37 chr6 39135580 39135753 -143279489 - MLT1G1 LTR MaLR -364 228 60 793 178 167 0 chr6 39135753 39135927 -143279315 - MER3 DNA MER1_type -4 205 3 564 272 78 37 chr6 39135927 39135989 -143279253 - MLT1G1 LTR MaLR -532 60 2 438 263 220 11 chr6 39137398 39137584 -143277658 + MIR SINE MIR 29 253 -9 180 0 0 0 chr6 39137628 39137648 -143277594 + (A)n Simple_repeat Simple_repeat 1 20 0 587 226 50 13 chr6 39137782 39137941 -143277301 + MER96B DNA MER1_type? 250 414 -3 199 296 167 8 chr6 39139462 39139594 -143275648 - MIR SINE MIR -43 219 67 525 235 41 59 chr6 39139747 39139917 -143275325 + MIR SINE MIR 96 262 0 397 287 125 0 chr6 39141748 39141884 -143273358 - MIR SINE MIR -96 166 14 220 289 0 0 chr6 39142026 39142078 -143273164 + MER5B DNA MER1_type 126 177 -1 191 146 125 42 chr6 39142205 39142253 -143272989 - L2 LINE L2 -37 3235 3184 2252 109 7 3 chr6 39142701 39143005 -143272237 - AluSx SINE Alu -7 305 1 387 217 161 56 chr6 39143601 39143762 -143271480 - MER5B DNA MER1_type 0 178 1 219 248 137 38 chr6 39143900 39144041 -143271201 - MIR SINE MIR -63 145 30 205 266 0 78 chr6 39144177 39144200 -143271042 + MIR SINE MIR 13 36 -226 2453 94 0 0 chr6 39144200 39144499 -143270743 + AluY SINE Alu 1 299 -12 205 266 0 78 chr6 39144499 39144539 -143270703 + MIR SINE MIR 36 71 -191 223 289 0 0 chr6 39146033 39146078 -143269164 + C-rich Low_complexity Low_complexity 1 45 0 465 219 76 0 chr6 39147223 39147342 -143267900 - MIR SINE MIR -69 193 66 707 211 125 89 chr6 39147467 39147622 -143267620 + L2 LINE L2 2931 3079 -234 1067 237 66 42 chr6 39147622 39147692 -143267550 + MER58B DNA MER1_type 1 68 -2352 2100 126 0 3 chr6 39147692 39147999 -143267243 - AluSx SINE Alu 0 306 1 1067 237 66 42 chr6 39147999 39148260 -143266982 + MER58B DNA MER1_type 68 341 0 707 211 125 89 chr6 39148260 39148473 -143266769 + L2 LINE L2 3079 3312 -1 287 259 259 0 chr6 39148513 39148671 -143266571 + MIR SINE MIR 53 251 -11 470 247 114 12 chr6 39149385 39149551 -143265691 + MIR3 SINE MIR 17 199 -9 1246 128 90 0 chr6 39150277 39150488 -143264754 + MER30 DNA MER1_type 1 230 0 733 212 84 0 chr6 39150490 39150669 -143264573 + MER3 DNA MER1_type 13 206 -3 1341 91 5 0 chr6 39150823 39151020 -143264222 + L1PA13 LINE L1 5964 6161 -2 290 181 0 14 chr6 39151039 39151111 -143264131 + CT-rich Low_complexity Low_complexity 3 73 0 2388 92 0 0 chr6 39151383 39151678 -143263564 - AluY SINE Alu -16 295 1 2174 120 10 0 chr6 39151808 39152099 -143263143 - AluJb SINE Alu -18 294 1 955 277 149 34 chr6 39152150 39153268 -143261974 - L1ME3A LINE L1 -256 5914 4623 2144 143 0 10 chr6 39153285 39153593 -143261649 - AluSx SINE Alu -7 305 1 21 71 0 0 chr6 39153938 39153980 -143261262 + AT_rich Low_complexity Low_complexity 1 42 0 543 315 120 0 chr6 39154095 39154419 -143260823 - L1ME4a LINE L1 -233 5888 5526 505 294 119 68 chr6 39154685 39155197 -143260045 - L1ME4a LINE L1 -18 6103 827 2634 84 19 3 chr6 39155327 39155695 -143259547 + THE1C LTR MaLR 2 375 0 516 278 133 26 chr6 39156158 39156392 -143258850 + MIR SINE MIR 4 262 0 412 195 8 117 chr6 39156923 39157051 -143258191 + MER81 DNA DNA 1 114 0 257 246 33 0 chr6 39158314 39158375 -143256867 + L2 LINE L2 3249 3311 -2 256 300 25 25 chr6 39158439 39158519 -143256723 + MIR3 SINE MIR 81 160 -48 1238 216 109 11 chr6 39158522 39158869 -143256373 + MER58D DNA MER1_type 4 384 -2 693 294 117 15 chr6 39161609 39161942 -143253300 - LTR33 LTR ERVL 0 521 155 216 265 29 0 chr6 39162160 39162228 -143253014 + L2 LINE L2 3241 3310 -3 254 144 10 87 chr6 39163418 39163522 -143251720 + CT-rich Low_complexity Low_complexity 3 98 0 266 188 101 0 chr6 39165035 39165104 -143250138 - MER5A DNA MER1_type -86 103 28 195 42 0 0 chr6 39167006 39167030 -143248212 + (TCCTG)n Simple_repeat Simple_repeat 1 24 0 268 229 16 0 chr6 39167755 39167816 -143247426 + MER63 DNA MER1_type 5 66 -995 * 422 200 19 25 chr6 39167797 39167925 -143247317 + MER63 DNA MER1_type 701 1056 -5 21 71 0 0 chr6 39167997 39168039 -143247203 + AT_rich Low_complexity Low_complexity 1 42 0 795 195 0 0 chr6 39271452 39271865 -143143377 + (CA)n Simple_repeat Simple_repeat 1 413 0 237 75 57 0 chr6 39271880 39271933 -143143309 + (CA)n Simple_repeat Simple_repeat 2 57 0 364 279 240 0 chr6 39273328 39273536 -143141706 - LTR16C LTR ERVL -58 433 176 295 359 30 24 chr6 39273882 39274049 -143141193 + MIR SINE MIR 49 216 -46 276 250 0 0 chr6 39274635 39274691 -143140551 - MIR SINE MIR -115 147 92 261 227 45 109 chr6 39275080 39275190 -143140052 + MIR SINE MIR 34 146 -62 3207 263 80 26 chr6 39275449 39275488 -143139754 + L2 LINE L2 1612 1647 -1666 2081 132 146 13 chr6 39275488 39275866 -143139376 + MSTA LTR MaLR 1 428 0 3207 263 80 26 chr6 39275866 39277162 -143138080 + L2 LINE L2 1647 3040 -273 2321 134 121 3 chr6 39277162 39277543 -143137699 + MSTB LTR MaLR 1 426 0 3207 263 80 26 chr6 39277543 39277612 -143137630 + L2 LINE L2 3040 3104 -209 475 259 284 5 chr6 39278048 39278249 -143136993 + MIR SINE MIR 6 262 0 533 299 0 7 chr6 39278725 39278872 -143136370 - MIR SINE MIR -99 163 18 870 241 75 17 chr6 39278899 39279265 -143135977 + LTR16C LTR ERVL 40 461 -30 376 223 146 21 chr6 39279651 39279825 -143135417 + MIR SINE MIR 7 193 -15 441 98 63 29 chr6 39280177 39280351 -143134891 + (CA)n Simple_repeat Simple_repeat 1 180 0 491 104 52 23 chr6 39280409 39280582 -143134660 + (CA)n Simple_repeat Simple_repeat 1 178 0 460 157 36 18 chr6 39280661 39280949 -143134293 + (CA)n Simple_repeat Simple_repeat 1 293 0 299 304 50 43 chr6 39281584 39281745 -143133497 + MIR SINE MIR 27 188 -74 195 261 77 39 chr6 39282576 39282706 -143132536 + L2 LINE L2 2840 2974 -339 735 198 208 5 chr6 39282864 39283056 -143132186 + MIR SINE MIR 32 262 0 272 378 112 0 chr6 39284895 39285128 -143130114 + L2 LINE L2 2832 3090 -182 405 283 29 36 chr6 39285299 39285437 -143129805 - L2 LINE L2 -39 3274 3138 202 284 91 23 chr6 39285628 39285716 -143129526 - MIR SINE MIR -55 207 114 189 247 65 13 chr6 39285803 39285880 -143129362 + MIR SINE MIR 65 145 -117 303 331 46 0 chr6 39286317 39286447 -143128795 - MIR SINE MIR -67 195 60 1062 251 125 45 chr6 39287024 39287804 -143127438 + L2 LINE L2 2489 3313 0 453 81 0 0 chr6 39288104 39288166 -143127076 + (CA)n Simple_repeat Simple_repeat 1 62 0 294 290 30 38 chr6 39288413 39288544 -143126698 + MIR SINE MIR 21 150 -112 261 369 49 8 chr6 39288836 39288958 -143126284 - MIR3 SINE MIR -52 156 30 207 0 0 0 chr6 39289518 39289541 -143125701 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 385 330 55 28 chr6 39289709 39289891 -143125351 - MIR3 SINE MIR -16 192 6 802 254 29 0 chr6 39289962 39290167 -143125075 - MIR SINE MIR -50 212 2 197 242 48 16 chr6 39292184 39292246 -143122996 - L2 LINE L2 -1 3271 3208 1321 240 140 14 chr6 39292882 39293311 -143121931 - L2 LINE L2 -3 3310 2828 587 267 155 0 chr6 39293898 39294085 -143121157 + MIR SINE MIR 10 225 -37 1947 155 0 10 chr6 39294085 39294382 -143120860 + AluJb SINE Alu 1 294 -18 1207 107 0 0 chr6 39294382 39294541 -143120701 + AluSx SINE Alu 1 159 -153 312 251 82 76 chr6 39294650 39294822 -143120420 + MIR3 SINE MIR 17 202 -42 243 396 43 11 chr6 39294878 39295065 -143120177 + L2 LINE L2 2018 2210 -1104 513 271 80 63 chr6 39295096 39295398 -143119844 + MLT1I LTR MaLR 71 377 -32 2245 106 3 0 chr6 39295408 39295709 -143119533 - AluSx SINE Alu -6 306 5 2434 46 16 7 chr6 39295720 39295901 -143119341 - AluY SINE Alu -2 309 122 189 0 0 0 chr6 39295901 39295922 -143119320 + (TG)n Simple_repeat Simple_repeat 2 22 0 2434 46 16 7 chr6 39295922 39296046 -143119196 - AluY SINE Alu -189 122 1 186 356 177 23 chr6 39296087 39296432 -143118810 + L2 LINE L2 2268 2665 -649 470 49 49 0 chr6 39296437 39296519 -143118723 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3664 228 97 54 chr6 39296617 39296811 -143118431 - L1MEc LINE L1 -4812 1584 1400 2171 94 7 0 chr6 39296811 39297098 -143118144 - AluSc SINE Alu -6 303 15 3664 228 97 54 chr6 39297098 39297669 -143117573 - L1MEc LINE L1 -4996 1400 855 2061 134 3 3 chr6 39297669 39297968 -143117274 - AluSx SINE Alu -13 299 1 3664 228 97 54 chr6 39297968 39298650 -143116592 - L1MEc LINE L1 -5541 855 69 1628 204 58 25 chr6 39298650 39299012 -143116230 + MLT1A2 LTR MaLR 1 374 0 3664 228 97 54 chr6 39299012 39299036 -143116206 - L1MEc LINE L1 -6327 69 47 947 253 18 22 chr6 39299152 39299381 -143115861 - MIR SINE MIR -33 229 2 194 270 201 48 chr6 39299580 39299769 -143115473 - L2 LINE L2 -228 3044 2827 206 273 107 27 chr6 39299824 39299974 -143115268 - L2 LINE L2 -575 2739 2578 518 284 7 14 chr6 39300076 39300224 -143115018 + MLT1J LTR MaLR 192 338 -173 733 195 0 0 chr6 39300506 39300629 -143114613 + FLAM_A SINE Alu 10 132 -10 215 299 9 84 chr6 39300860 39300897 -143114345 + MIR SINE MIR 164 202 -60 1024 256 104 19 chr6 39300897 39301272 -143113970 - MLT1I LTR MaLR -2 407 1 215 299 9 84 chr6 39301272 39301341 -143113901 + MIR SINE MIR 202 262 0 677 322 54 25 chr6 39301366 39301530 -143113712 - L2 LINE L2 -69 3244 3086 180 111 0 0 chr6 39301530 39301557 -143113685 + (TG)n Simple_repeat Simple_repeat 1 27 0 677 322 54 25 chr6 39301557 39301845 -143113397 - L2 LINE L2 -227 3086 2775 983 291 228 5 chr6 39301873 39302787 -143112455 + L2 LINE L2 2107 3251 -62 2211 122 0 6 chr6 39302787 39303099 -143112143 - AluSx SINE Alu -2 310 1 983 291 228 5 chr6 39303099 39303181 -143112061 + L2 LINE L2 3251 3313 0 291 93 0 0 chr6 39303664 39303707 -143111535 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 2097 267 60 72 chr6 39304184 39304417 -143110825 + L1MEd LINE L1 31 265 -5995 1292 171 14 0 chr6 39304417 39304628 -143110614 - MER20 DNA MER1_type -3 216 3 2097 267 60 72 chr6 39304628 39305222 -143110020 + L1MEd LINE L1 265 876 -5384 1340 193 10 53 chr6 39305222 39305522 -143109720 - AluJb SINE Alu -25 287 1 2097 267 60 72 chr6 39305522 39306039 -143109203 + L1MEd LINE L1 876 1398 -4862 210 256 70 77 chr6 39307067 39307211 -143108031 + MIR SINE MIR 42 187 -63 449 259 58 7 chr6 39308097 39308236 -143107006 + MIR SINE MIR 47 192 -70 234 244 0 0 chr6 39308497 39308542 -143106700 + MIR SINE MIR 42 86 -176 1986 106 23 23 chr6 39308558 39308861 -143106381 - AluJb SINE Alu -9 303 1 1135 228 58 26 chr6 39310040 39310387 -143104855 - LTR37A LTR ERV1 -28 398 41 24 0 0 0 chr6 39310584 39310608 -143104634 + AT_rich Low_complexity Low_complexity 1 24 0 1411 170 121 0 chr6 39310624 39310889 -143104353 + AluJb SINE Alu 1 297 -15 691 204 0 0 chr6 39310944 39311086 -143104156 - L1ME3 LINE L1 -25 6137 5996 839 182 0 0 chr6 39311097 39311229 -143104013 + FLAM_C SINE Alu 1 132 -1 1824 104 65 57 chr6 39311256 39311783 -143103459 + MER51A LTR ERV1 1 616 -18 827 201 13 13 chr6 39311788 39311947 -143103295 + AluJb SINE Alu 153 311 -1 2760 235 54 18 chr6 39311950 39313418 -143101824 - L1ME3 LINE L1 -164 5998 4479 262 302 206 0 chr6 39313703 39313829 -143101413 + MIR SINE MIR 98 249 -13 487 279 169 5 chr6 39314303 39314504 -143100738 - MIR SINE MIR -13 249 16 1353 241 71 21 chr6 39314987 39315368 -143099874 + L2 LINE L2 2912 3311 -2 321 132 0 0 chr6 39315474 39315527 -143099715 - MLT1I LTR MaLR -7 402 350 239 152 22 0 chr6 39317055 39317101 -143098141 + MLT1J LTR MaLR 85 131 -380 2072 121 3 3 chr6 39317252 39317559 -143097683 - AluSq SINE Alu -6 307 1 385 256 43 43 chr6 39317747 39317958 -143097284 - L1MC4 LINE L1 -1 8041 7831 387 291 67 39 chr6 39318035 39318115 -143097127 - L1ME2 LINE L1 -20 6144 6068 2244 92 3 0 chr6 39318115 39318408 -143096834 - AluSq SINE Alu -19 294 1 387 291 67 39 chr6 39318408 39318506 -143096736 - L1ME2 LINE L1 -96 6068 5961 612 271 79 110 chr6 39318509 39318900 -143096342 + MLT1J LTR MaLR 85 463 -48 323 228 22 11 chr6 39319106 39319198 -143096044 - MLT1J LTR MaLR -6 505 413 227 217 0 0 chr6 39319897 39319943 -143095299 + (TAA)n Simple_repeat Simple_repeat 2 47 0 220 274 32 0 chr6 39319983 39320045 -143095197 - MIR SINE MIR -81 181 118 1916 160 0 3 chr6 39320046 39320352 -143094890 + AluJb SINE Alu 1 305 -7 207 0 0 0 chr6 39320362 39320385 -143094857 + (GA)n Simple_repeat Simple_repeat 1 23 0 227 224 122 56 chr6 39320385 39320492 -143094750 - MIR SINE MIR -128 134 21 396 295 29 0 chr6 39320526 39320631 -143094611 + MIR SINE MIR 47 154 -108 266 264 45 73 chr6 39321650 39321760 -143093482 + MIR3 SINE MIR 93 199 -9 494 258 25 0 chr6 39322074 39322194 -143093048 - MIR3 SINE MIR -52 156 34 389 227 84 34 chr6 39322390 39322509 -143092733 - L2 LINE L2 -4 3309 3185 3843 170 87 72 chr6 39322523 39323870 -143091372 - pTR5 LTR ERV1 0 2438 743 347 284 42 21 chr6 39325607 39325761 -143089481 + MER5B DNA MER1_type 15 182 -7 202 213 21 0 chr6 39326315 39326362 -143088880 + L2 LINE L2 3180 3227 -86 207 224 0 20 chr6 39326852 39326901 -143088341 - L2 LINE L2 -2 3311 3264 305 163 51 41 chr6 39328127 39328225 -143087017 + (CAGG)n Simple_repeat Simple_repeat 3 101 0 234 261 34 23 chr6 39329914 39330002 -143085240 - MIR SINE MIR -80 182 94 422 309 53 57 chr6 39330286 39330568 -143084674 + MLT1J2 LTR MaLR 21 301 -149 377 323 106 28 chr6 39330723 39330940 -143084302 + L3 LINE CR1 1272 1505 -72 247 245 46 93 chr6 39331163 39331314 -143083928 + MIR3 SINE MIR 2 145 -63 216 293 29 115 chr6 39331844 39331996 -143083246 + MIR SINE MIR 32 172 -58 850 224 49 37 chr6 39334645 39334891 -143080351 + MIR SINE MIR 14 262 0 206 254 73 0 chr6 39335784 39335839 -143079403 + MIR SINE MIR 108 166 -96 224 333 33 0 chr6 39336658 39336748 -143078494 + MIR SINE MIR 48 140 -68 676 277 66 0 chr6 39336754 39336920 -143078322 + MER45A DNA AcHobo 1 177 -1 343 303 0 5 chr6 39338130 39338326 -143076916 + (CA)n Simple_repeat Simple_repeat 1 194 0 236 302 21 10 chr6 39338378 39338474 -143076768 + (CA)n Simple_repeat Simple_repeat 1 97 0 202 271 0 0 chr6 39338764 39338812 -143076430 + MIR SINE MIR 74 121 -87 315 216 205 0 chr6 39339585 39339683 -143075559 + MIR SINE MIR 38 152 -58 240 143 0 0 chr6 39339809 39339851 -143075391 + (TC)n Simple_repeat Simple_repeat 2 43 0 1362 266 172 10 chr6 39339851 39339886 -143075356 + L2 LINE L2 2149 2177 -1137 2017 153 0 3 chr6 39339886 39340199 -143075043 - AluSx SINE Alu 0 312 1 1362 266 172 10 chr6 39340199 39340790 -143074452 + L2 LINE L2 2177 2877 -437 325 286 90 0 chr6 39340880 39341013 -143074229 - MIR3 SINE MIR -63 145 1 324 308 15 30 chr6 39341378 39341511 -143073731 + G-rich Low_complexity Low_complexity 4 134 0 228 198 25 12 chr6 39341540 39341621 -143073621 + GA-rich Low_complexity Low_complexity 1 82 0 276 252 67 34 chr6 39343033 39343143 -143072099 - MIR3 SINE MIR -72 136 23 571 230 178 0 chr6 39343143 39343295 -143071947 + MER5A DNA MER1_type 4 182 -7 2206 121 0 0 chr6 39343766 39344073 -143071169 + AluSc SINE Alu 1 307 -2 452 256 60 15 chr6 39344330 39344463 -143070779 + MIR3 SINE MIR 9 147 -61 535 238 33 0 chr6 39344541 39344663 -143070579 + L2 LINE L2 3187 3312 -1 288 349 127 0 chr6 39345044 39345170 -143070072 + MIR SINE MIR 118 259 -3 189 171 24 0 chr6 39345734 39345775 -143069467 - MIR SINE MIR -67 141 100 191 157 41 19 chr6 39347434 39347486 -143067756 - MIR SINE MIR -70 138 93 290 304 43 11 chr6 39347741 39347833 -143067409 + MIR SINE MIR 118 212 -50 493 261 128 57 chr6 39348023 39348153 -143067089 - MIR SINE MIR -3 259 107 1845 139 0 46 chr6 39348153 39348456 -143066786 + AluSx SINE Alu 3 291 -21 493 261 128 57 chr6 39348456 39348536 -143066706 - MIR SINE MIR -155 107 34 226 341 146 0 chr6 39349185 39349349 -143065893 - MIR3 SINE MIR -1 207 20 231 146 0 0 chr6 39350204 39350245 -143064997 + (CA)n Simple_repeat Simple_repeat 1 41 0 307 389 0 0 chr6 39350245 39350335 -143064907 + L1MC4 LINE L1 6614 6703 -1339 * 326 366 0 0 chr6 39350276 39350369 -143064873 - L1MC4 LINE L1 -1336 6706 6614 288 242 14 39 chr6 39350490 39350608 -143064634 - MIR SINE MIR -82 126 18 667 238 85 0 chr6 39350995 39351159 -143064083 + MER5B DNA MER1_type 1 178 0 600 257 40 7 chr6 39351162 39351314 -143063928 - MER5B DNA MER1_type -10 168 12 254 321 57 28 chr6 39351348 39351454 -143063788 - MIR SINE MIR -65 197 89 2161 105 3 10 chr6 39351474 39351779 -143063463 - AluSq SINE Alu -10 303 1 305 275 12 0 chr6 39352135 39352215 -143063027 + MER94 DNA DNA 2 82 -52 365 290 59 95 chr6 39352320 39352489 -143062753 + MIR SINE MIR 76 238 -24 292 285 58 80 chr6 39353021 39353158 -143062084 + MIR SINE MIR 10 143 -119 616 318 60 25 chr6 39353205 39353488 -143061754 + L2 LINE L2 3019 3311 -2 1213 166 38 5 chr6 39354784 39354995 -143060247 - MER20 DNA MER1_type -1 218 1 328 259 173 17 chr6 39355020 39355224 -143060018 + MIR SINE MIR 20 261 -1 288 319 88 0 chr6 39355613 39355726 -143059516 + MIR3 SINE MIR 81 203 -5 215 308 0 13 chr6 39356172 39356250 -143058992 + GA-rich Low_complexity Low_complexity 3 79 0 259 303 46 13 chr6 39357178 39357320 -143057922 - MIR SINE MIR -3 205 54 196 268 36 0 chr6 39358551 39358607 -143056635 + L2 LINE L2 3129 3186 -86 776 307 63 8 chr6 39358714 39358952 -143056290 - MIR SINE MIR -5 257 7 401 243 36 18 chr6 39359492 39359595 -143055647 + MIR SINE MIR 26 133 -129 972 211 81 36 chr6 39359595 39359842 -143055400 + MIR SINE MIR 5 262 0 379 230 0 0 chr6 39360217 39360291 -143054951 - MIR SINE MIR -56 152 79 220 243 54 72 chr6 39360643 39360754 -143054488 - L2 LINE L2 -186 3086 2978 216 145 97 16 chr6 39360786 39360848 -143054394 - L2 LINE L2 -26 3246 3180 210 262 0 0 chr6 39360848 39360890 -143054352 + (CA)n Simple_repeat Simple_repeat 1 42 0 769 293 92 9 chr6 39361547 39361776 -143053466 - MIR SINE MIR 0 262 15 476 258 192 0 chr6 39362095 39362277 -143052965 - MIR SINE MIR -17 245 29 244 119 0 51 chr6 39362684 39362743 -143052499 + L1MC4 LINE L1 7029 7084 -958 276 246 148 25 chr6 39363060 39363182 -143052060 - MIR3 SINE MIR -7 201 65 294 328 56 40 chr6 39363415 39363829 -143051413 + L1ME4a LINE L1 5544 5959 -162 504 233 8 17 chr6 39363829 39363949 -143051293 + L2 LINE L2 3194 3312 -1 276 98 24 0 chr6 39364644 39364685 -143050557 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 944 145 0 6 chr6 39364687 39364866 -143050376 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 530 190 8 0 chr6 39364838 39364959 -143050283 + CT-rich Low_complexity Low_complexity 1 122 0 * 334 282 48 24 chr6 39365297 39365421 -143049821 - L2 LINE L2 -14 3299 3173 23 33 0 0 chr6 39366243 39366273 -143048969 + AT_rich Low_complexity Low_complexity 1 30 0 441 54 0 0 chr6 39366485 39366541 -143048701 + (CA)n Simple_repeat Simple_repeat 2 57 0 369 0 0 0 chr6 39366971 39367012 -143048230 + (TG)n Simple_repeat Simple_repeat 1 41 0 201 278 0 0 chr6 39367145 39367199 -143048043 + L2 LINE L2 2932 2985 -328 206 231 0 0 chr6 39368260 39368312 -143046930 + (CA)n Simple_repeat Simple_repeat 1 52 0 360 0 0 0 chr6 39368387 39368427 -143046815 + (CA)n Simple_repeat Simple_repeat 2 41 0 2224 90 0 3 chr6 39368717 39369007 -143046235 - AluSg SINE Alu -21 289 1 339 278 87 8 chr6 39369032 39369158 -143046084 - MIR SINE MIR -113 149 14 462 248 75 6 chr6 39369189 39369346 -143045896 + MIR SINE MIR 6 176 -63 448 238 9 0 chr6 39369570 39369675 -143045567 + MIR SINE MIR 48 153 -109 622 266 18 18 chr6 39370538 39370707 -143044535 + MIR SINE MIR 3 171 -91 275 130 19 0 chr6 39372883 39372937 -143042305 + (CA)n Simple_repeat Simple_repeat 1 55 0 382 173 236 31 chr6 39373969 39374096 -143041146 - L2 LINE L2 -1 3312 3160 687 270 56 0 chr6 39374506 39374721 -143040521 + L1MC4a LINE L1 5659 5885 -1923 327 164 60 129 chr6 39375046 39375162 -143040080 + L1MC5 LINE L1 7611 7718 -243 924 252 35 17 chr6 39375966 39376196 -143039046 + MIR SINE MIR 27 260 -2 311 250 88 0 chr6 39376686 39376754 -143038488 - L2 LINE L2 -1 3312 3239 209 319 82 0 chr6 39376845 39376980 -143038262 + L2 LINE L2 2915 3060 -212 231 61 0 0 chr6 39377502 39377535 -143037707 + (TG)n Simple_repeat Simple_repeat 1 33 0 467 294 211 16 chr6 39377601 39377965 -143037277 - L2 LINE L2 0 3313 2879 296 263 13 0 chr6 39377965 39378041 -143037201 + (TG)n Simple_repeat Simple_repeat 2 78 0 445 340 111 21 chr6 39378550 39378785 -143036457 + MIR SINE MIR 7 262 0 266 367 23 16 chr6 39378796 39378924 -143036318 - MIR SINE MIR -98 164 36 273 306 14 24 chr6 39381133 39381280 -143033962 - L2 LINE L2 0 3313 3126 552 306 85 17 chr6 39381310 39381604 -143033638 + MLT1I LTR MaLR 96 409 0 1073 218 48 4 chr6 39381767 39381996 -143033246 - MIR SINE MIR -1 261 23 214 255 20 0 chr6 39382037 39382088 -143033154 + (CA)n Simple_repeat Simple_repeat 2 53 0 1211 224 108 32 chr6 39382897 39383334 -143031908 + L2 LINE L2 2826 3295 -18 227 355 24 24 chr6 39383344 39383468 -143031774 - MIR SINE MIR -70 192 69 352 129 32 0 chr6 39384322 39384384 -143030858 + MIR SINE MIR 74 137 -71 616 255 111 28 chr6 39384965 39385181 -143030061 - MIR SINE MIR -16 246 13 324 203 54 0 chr6 39385311 39385385 -143029857 + MIR3 SINE MIR 90 167 -41 1752 269 147 38 chr6 39385991 39386705 -143028537 + L2 LINE L2 1936 2774 -540 2281 110 0 0 chr6 39386705 39387015 -143028227 + AluSx SINE Alu 1 310 -2 1752 269 147 38 chr6 39387015 39387219 -143028023 + L2 LINE L2 2774 2954 -360 440 313 0 33 chr6 39387218 39387368 -143027874 + L2 LINE L2 3130 3274 -39 * 500 371 21 49 chr6 39387906 39388294 -143026948 - L2 LINE L2 -7 3265 2889 294 271 47 0 chr6 39388341 39388426 -143026816 - L2 LINE L2 -674 2640 2552 211 323 0 0 chr6 39388772 39388834 -143026408 + MIR SINE MIR 74 135 -73 549 325 118 0 chr6 39388855 39389083 -143026159 - MIR SINE MIR 0 262 8 589 278 96 0 chr6 39390249 39390458 -143024784 - L3 LINE CR1 -68 1509 1281 1737 128 11 29 chr6 39390623 39390904 -143024338 + AluJo SINE Alu 37 312 0 525 271 118 29 chr6 39390958 39391238 -143024004 + L2 LINE L2 2812 3116 -197 416 51 17 0 chr6 39391672 39391731 -143023511 + (CA)n Simple_repeat Simple_repeat 2 61 0 327 25 0 0 chr6 39391965 39392005 -143023237 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 120 0 40 chr6 39393657 39393732 -143021510 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 1574 170 103 0 chr6 39393737 39394019 -143021223 - AluJo SINE Alu -1 311 1 820 276 144 18 chr6 39394346 39394929 -143020313 + L2 LINE L2 2665 3312 -1 257 377 27 0 chr6 39394960 39395106 -143020136 + L2 LINE L2 2584 2733 -581 233 275 0 14 chr6 39395452 39395521 -143019721 + L2 LINE L2 3245 3312 -1 282 160 0 0 chr6 39395806 39395856 -143019386 + (CGTG)n Simple_repeat Simple_repeat 1 50 0 212 355 105 8 chr6 39396301 39396425 -143018817 + MIR3 SINE MIR 8 143 -65 313 241 63 38 chr6 39396827 39396956 -143018286 + MIR SINE MIR 101 232 -30 298 255 179 0 chr6 39396957 39397063 -143018179 - L2 LINE L2 0 3313 3189 1676 279 49 24 chr6 39397160 39397752 -143017490 + L1ME3 LINE L1 5556 6162 0 463 268 152 19 chr6 39398539 39398808 -143016434 + L1ME4a LINE L1 5808 6112 -9 434 247 44 31 chr6 39398984 39399153 -143016089 + MIR3 SINE MIR 14 141 -67 2169 116 10 0 chr6 39399697 39400000 -143015242 + AluSx SINE Alu 1 306 -6 308 291 131 17 chr6 39400136 39400311 -143014931 + L1MC/D LINE L1 5567 5761 -2047 1098 113 6 12 chr6 39401321 39401481 -143013761 - AluY SINE Alu -152 159 1 230 108 0 0 chr6 39402413 39402450 -143012792 - L2 LINE L2 -20 3252 3216 202 200 0 0 chr6 39402625 39402660 -143012582 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 375 23 0 0 chr6 39403313 39403357 -143011885 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 224 325 0 0 chr6 39403661 39403738 -143011504 - MIR SINE MIR -139 123 47 665 254 129 0 chr6 39404223 39404424 -143010818 - MIR SINE MIR -29 233 7 242 280 133 13 chr6 39404633 39404708 -143010534 - MIR3 SINE MIR -31 177 94 512 328 68 14 chr6 39404817 39405110 -143010132 + L2 LINE L2 2910 3218 -95 435 240 206 0 chr6 39405152 39405298 -143009944 + MER5B DNA MER1_type 3 178 0 2066 66 0 0 chr6 39405575 39405832 -143009410 - AluY SINE Alu -18 293 37 219 256 233 0 chr6 39406626 39406712 -143008530 - MIR SINE MIR -108 154 49 964 172 146 39 chr6 39406734 39406967 -143008275 + MIR SINE MIR 2 259 -3 1078 219 38 4 chr6 39407468 39407733 -143007509 - MER58 DNA MER1_type -2146 274 1 955 322 103 12 chr6 39407832 39408409 -143006833 - L2 LINE L2 -247 3066 2419 673 239 135 57 chr6 39408898 39408961 -143006281 - MIR SINE MIR -11 251 194 2329 99 3 0 chr6 39408961 39409273 -143005969 - AluSq SINE Alu 0 313 1 673 239 135 57 chr6 39409273 39409439 -143005803 - MIR SINE MIR -68 194 4 184 349 12 36 chr6 39409447 39409530 -143005712 + MIR3 SINE MIR 109 189 -19 2336 72 0 0 chr6 39409616 39409906 -143005336 - AluSx SINE Alu -17 295 6 180 353 141 0 chr6 39411267 39411352 -143003890 - MIR SINE MIR -12 250 154 202 200 0 25 chr6 39412498 39412538 -143002704 + C-rich Low_complexity Low_complexity 2 40 0 309 118 0 0 chr6 39412539 39412590 -143002652 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 313 0 31 chr6 39412745 39412841 -143002401 + GA-rich Low_complexity Low_complexity 4 96 0 255 203 0 0 chr6 39413152 39413211 -143002031 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 276 272 46 4 chr6 39414795 39414886 -143000356 - MIR3 SINE MIR -53 155 77 207 0 0 0 chr6 39415260 39415283 -142999959 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 204 259 0 17 chr6 39415659 39415717 -142999525 + MIR SINE MIR 96 152 -56 254 318 42 34 chr6 39415949 39416095 -142999147 - MIR SINE MIR -62 146 46 229 311 10 29 chr6 39416529 39416632 -142998610 + MER20B DNA MER1_type 62 162 -621 685 233 19 13 chr6 39416698 39416857 -142998385 - MIR SINE MIR -27 235 76 234 263 18 0 chr6 39416890 39416947 -142998295 + MIR3 SINE MIR 149 206 -2 378 0 0 0 chr6 39417160 39417202 -142998040 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 71 0 0 chr6 39417523 39417551 -142997691 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 232 292 0 15 chr6 39417788 39417853 -142997389 + CT-rich Low_complexity Low_complexity 6 69 0 1916 137 0 38 chr6 39418179 39418492 -142996750 - AluJb SINE Alu -11 301 1 183 200 133 27 chr6 39419341 39419416 -142995826 + L2 LINE L2 3188 3270 -2 237 232 0 0 chr6 39420066 39420122 -142995120 + L2 LINE L2 3000 3055 -217 1317 263 69 36 chr6 39420466 39421029 -142994213 - L2 LINE L2 -7 3306 2728 23 0 0 0 chr6 39424867 39424890 -142990352 + GC_rich Low_complexity Low_complexity 1 23 0 200 161 16 0 chr6 39426161 39426223 -142989019 + (CGAG)n Simple_repeat Simple_repeat 2 64 0 270 242 0 0 chr6 39426818 39426880 -142988362 - MIR SINE MIR -66 142 81 269 310 0 23 chr6 39427596 39427683 -142987559 + L2 LINE L2 3188 3272 0 304 271 153 0 chr6 39428056 39428174 -142987068 + MIR SINE MIR 34 169 -93 496 330 20 30 chr6 39428174 39428371 -142986871 + MER91A DNA MER1_type 1 195 -1 288 0 0 0 chr6 39428499 39428531 -142986711 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 339 155 0 0 chr6 39428968 39429052 -142986190 + (CA)n Simple_repeat Simple_repeat 2 85 0 252 323 95 25 chr6 39429240 39429398 -142985844 + MIR3 SINE MIR 3 171 -37 352 295 48 36 chr6 39429613 39429779 -142985463 - L3b LINE CR1 -174 1409 1242 723 272 117 20 chr6 39430416 39430714 -142984528 + MER46C DNA MER2_type 12 338 0 206 208 38 19 chr6 39431897 39431950 -142983292 + CT-rich Low_complexity Low_complexity 5 58 0 205 250 0 0 chr6 39433121 39433165 -142982077 + CT-rich Low_complexity Low_complexity 3 46 0 233 233 44 100 chr6 39433561 39433651 -142981591 - MIR SINE MIR -70 192 108 1524 139 24 124 chr6 39434202 39434541 -142980701 + AluYb8 SINE Alu 1 305 -13 218 297 68 0 chr6 39434748 39434822 -142980420 + MIR SINE MIR 102 180 -82 239 250 0 0 chr6 39435129 39435181 -142980061 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 342 0 0 0 chr6 39435189 39435227 -142980015 + (CA)n Simple_repeat Simple_repeat 2 39 0 560 209 92 43 chr6 39436033 39436122 -142979120 + MER5B DNA MER1_type 1 84 -94 678 137 97 24 chr6 39436122 39436246 -142978996 - FLAM_C SINE Alu 0 133 1 560 209 92 43 chr6 39436246 39436319 -142978923 + MER5B DNA MER1_type 84 171 -7 1985 125 51 0 chr6 39436695 39437019 -142978223 + AluSx SINE Alu 1 339 0 242 300 27 10 chr6 39437213 39437308 -142977934 - MIR SINE MIR -55 153 85 761 165 79 82 chr6 39437353 39437620 -142977622 + L1ME3A LINE L1 5827 6092 -78 1699 173 0 26 chr6 39437651 39437957 -142977285 + AluJo SINE Alu 5 302 -10 1801 106 0 46 chr6 39438868 39439150 -142976092 + AluJb SINE Alu 1 269 -43 1184 138 87 0 chr6 39439569 39439765 -142975477 + AluJb SINE Alu 90 302 -10 27 36 0 36 chr6 39439812 39439835 -142975407 + AT_rich Low_complexity Low_complexity 1 23 -31 1717 136 0 112 chr6 39439835 39440166 -142975076 + AluSx SINE Alu 1 294 -18 27 36 0 36 chr6 39440166 39440198 -142975044 + AT_rich Low_complexity Low_complexity 23 54 0 2279 94 0 10 chr6 39440414 39440712 -142974530 + AluSx SINE Alu 1 295 -17 1441 274 96 6 chr6 39440964 39441432 -142973810 - MER97c DNA MER1_type? -574 516 7 321 291 88 34 chr6 39441556 39441704 -142973538 + L2 LINE L2 3114 3269 -3 2511 47 7 3 chr6 39441974 39442271 -142972971 + AluY SINE Alu 1 298 -13 314 208 30 89 chr6 39442366 39442467 -142972775 - MIR SINE MIR -148 114 20 193 388 10 10 chr6 39442806 39442904 -142972338 + MIR SINE MIR 46 143 -65 1856 174 0 7 chr6 39444995 39445288 -142969954 - AluJo SINE Alu -19 293 3 1820 134 19 49 chr6 39445293 39445458 -142969784 - AluJb SINE Alu -14 298 145 1898 97 60 8 chr6 39445458 39445726 -142969516 - AluSp SINE Alu -14 299 18 1820 134 19 49 chr6 39445726 39445867 -142969375 - AluJb SINE Alu -167 145 1 2379 94 0 0 chr6 39445946 39446243 -142968999 - AluSg SINE Alu -13 297 1 2384 102 0 0 chr6 39446297 39446601 -142968641 - AluSg SINE Alu -6 304 1 996 305 91 14 chr6 39446612 39447242 -142968000 - L1ME3A LINE L1 -203 5967 5290 306 0 0 0 chr6 39447254 39447288 -142967954 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2360 87 10 0 chr6 39447306 39447604 -142967638 - AluSp SINE Alu -12 301 1 924 153 0 0 chr6 39447604 39447735 -142967507 - AluSq/x SINE Alu -177 135 5 2242 82 4 0 chr6 39447744 39448067 -142967175 - AluY SINE Alu 0 326 3 1871 124 84 0 chr6 39448069 39448342 -142966900 - AluSg SINE Alu -14 296 1 1047 177 6 11 chr6 39448342 39448523 -142966719 - AluJo SINE Alu -12 300 121 200 132 26 0 chr6 39448572 39448610 -142966632 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 704 195 0 0 chr6 39450038 39450156 -142965086 - AluJo SINE Alu -188 124 7 286 170 54 116 chr6 39450185 39450332 -142964910 - L1MC5 LINE L1 -58 7903 7766 2442 87 0 3 chr6 39450363 39450662 -142964580 - AluY SINE Alu -13 298 1 353 358 38 7 chr6 39450662 39450950 -142964292 - L1MCa LINE L1 -3289 3137 2841 2020 131 0 4 chr6 39450953 39451228 -142964014 + AluJb SINE Alu 6 279 -33 237 65 0 0 chr6 39451228 39451259 -142963983 + (CAA)n Simple_repeat Simple_repeat 2 32 0 314 219 6 107 chr6 39451264 39451304 -142963938 - L1MCa LINE L1 -3785 2641 2599 2172 128 0 0 chr6 39451304 39451602 -142963640 + AluSx SINE Alu 1 298 -14 314 219 6 107 chr6 39451602 39451730 -142963512 - L1MCa LINE L1 -3827 2599 2490 2316 103 0 3 chr6 39452092 39452394 -142962848 - AluY SINE Alu -8 303 3 217 241 58 58 chr6 39452561 39452648 -142962594 - L2 LINE L2 -3 3269 3183 200 159 0 45 chr6 39452699 39452743 -142962499 + C-rich Low_complexity Low_complexity 5 46 0 1459 148 0 10 chr6 39453185 39453394 -142961848 + AluSx SINE Alu 1 207 -105 2469 91 3 0 chr6 39453396 39453704 -142961538 + AluSg SINE Alu 2 310 0 2594 55 0 0 chr6 39453709 39454016 -142961226 + AluY SINE Alu 1 307 -4 1517 201 3 26 chr6 39454021 39454324 -142960918 + AluJo SINE Alu 1 296 -16 380 200 12 0 chr6 39454335 39454420 -142960822 + L1MEc LINE L1 2262 2347 -4049 1571 61 0 0 chr6 39454423 39454624 -142960618 - AluY SINE Alu 0 302 102 30 27 0 0 chr6 39454624 39454661 -142960581 + AT_rich Low_complexity Low_complexity 1 37 0 337 285 98 15 chr6 39454662 39454811 -142960431 - L1MCa LINE L1 -4295 2131 1989 333 0 0 0 chr6 39454847 39454881 -142960361 + (TG)n Simple_repeat Simple_repeat 1 71 0 333 0 0 0 chr6 39454881 39454918 -142960324 + (TG)n Simple_repeat Simple_repeat 2 38 0 1738 135 0 39 chr6 39455111 39455371 -142959871 - AluSq SINE Alu -63 250 1 2100 139 0 0 chr6 39456187 39456490 -142958752 - AluSx SINE Alu -7 305 3 959 94 0 58 chr6 39456490 39456628 -142958614 - AluSq/x SINE Alu -174 138 9 1344 124 6 0 chr6 39456729 39456907 -142958335 + AluSg/x SINE Alu 87 265 -45 352 178 14 14 chr6 39457020 39457093 -142958149 - AluJo SINE Alu -7 295 223 947 184 39 22 chr6 39457093 39457272 -142957970 - AluJo SINE Alu -128 184 3 219 288 82 0 chr6 39457341 39457414 -142957828 + MER5B DNA MER1_type 81 159 -19 1990 124 21 0 chr6 39457445 39457727 -142957515 + AluSx SINE Alu 1 288 -24 337 113 0 0 chr6 39457943 39458005 -142957237 + Alu SINE Alu 241 302 0 232 261 60 45 chr6 39460175 39460309 -142954933 - L1ME4a LINE L1 -11 6110 5975 22 0 0 0 chr6 39460336 39460358 -142954884 + AT_rich Low_complexity Low_complexity 1 22 0 2326 68 17 10 chr6 39460362 39460656 -142954586 + AluSg SINE Alu 1 296 -14 1451 158 43 50 chr6 39460660 39460938 -142954304 + AluJb SINE Alu 30 305 -7 2199 103 3 13 chr6 39460940 39461242 -142954000 + AluSx SINE Alu 1 299 -13 2369 96 0 19 chr6 39461246 39461559 -142953683 + AluSq SINE Alu 1 307 -6 2377 107 0 3 chr6 39461562 39461870 -142953372 + AluSx SINE Alu 1 307 -5 691 170 82 0 chr6 39461870 39462017 -142953225 + AluJb SINE Alu 134 292 -20 2513 53 0 10 chr6 39462017 39462318 -142952924 + AluY SINE Alu 1 298 -13 2435 81 0 0 chr6 39462318 39462614 -142952628 + AluY SINE Alu 1 296 -15 701 101 0 78 chr6 39462651 39462780 -142952462 + FLAM_A SINE Alu 24 142 0 1036 159 0 6 chr6 39462938 39463108 -142952134 - AluJb SINE Alu -10 302 134 313 264 104 7 chr6 39463108 39463252 -142951990 + L1MEd LINE L1 1056 1213 -4906 1948 130 9 16 chr6 39463253 39463601 -142951641 - MER4A LTR ERV1 0 664 261 2181 138 0 0 chr6 39463603 39463901 -142951341 - AluSx SINE Alu -14 298 1 325 298 57 0 chr6 39464004 39464128 -142951114 + L2 LINE L2 2654 2784 -530 1503 147 108 39 chr6 39464128 39464407 -142950835 - AluSx SINE Alu -12 300 3 225 313 145 33 chr6 39464564 39464778 -142950464 - L2 LINE L2 -954 2360 2123 192 324 81 9 chr6 39464813 39464924 -142950318 + L2 LINE L2 3139 3257 -15 3609 105 0 4 chr6 39464975 39465488 -142949754 - MER9 LTR ERVK 0 511 1 284 330 21 0 chr6 39465907 39466001 -142949241 - L2 LINE L2 -528 2786 2691 1988 142 0 22 chr6 39466001 39466312 -142948930 - AluSq SINE Alu -9 304 1 1818 158 9 53 chr6 39466312 39466634 -142948608 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 39467209 39467233 -142948009 + (CA)n Simple_repeat Simple_repeat 2 25 0 1937 93 19 30 chr6 39467654 39467923 -142947319 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 39467926 39467967 -142947275 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2011 120 3 7 chr6 39467971 39468254 -142946988 - AluSx SINE Alu -30 282 1 2295 104 3 10 chr6 39468336 39468643 -142946599 - AluSp SINE Alu -8 305 1 2040 137 10 7 chr6 39468666 39468965 -142946277 - AluSx SINE Alu -8 304 5 244 271 101 47 chr6 39468968 39469097 -142946145 - L1ME3A LINE L1 -60 6110 5975 2130 217 50 32 chr6 39469215 39469533 -142945709 - L1ME1 LINE L1 -5 6161 5825 2353 110 0 0 chr6 39469533 39469842 -142945400 - AluSx SINE Alu -3 309 1 2130 217 50 32 chr6 39469842 39470118 -142945124 - L1ME1 LINE L1 -341 5825 5556 693 169 52 113 chr6 39470121 39470369 -142944873 - MER21A LTR ERV1 -3 928 696 2393 161 108 91 chr6 39470369 39470954 -142944288 - LTR12 LTR ERV1 -2 712 118 1509 188 72 60 chr6 39470957 39471403 -142943839 - pTR5 LTR ERV1 -1245 1193 743 867 126 28 28 chr6 39471403 39471546 -142943696 - MER21A LTR ERV1 -230 701 559 2800 157 47 72 chr6 39471547 39472090 -142943152 + MER4D LTR ERV1 1 525 -378 2203 121 0 0 chr6 39472090 39472388 -142942854 + AluSx SINE Alu 1 298 -14 2800 157 47 72 chr6 39472388 39472511 -142942731 + MER4D LTR ERV1 525 650 -253 2471 144 9 118 chr6 39472512 39473053 -142942189 + LTR12 LTR ERV1 1 482 -232 767 216 82 35 chr6 39473053 39473284 -142941958 + MER4D LTR ERV1 651 892 -11 242 269 0 0 chr6 39473327 39473379 -142941863 + LTR30 LTR ERV1 1 52 -670 1370 105 39 53 chr6 39473379 39473652 -142941590 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 39473687 39473710 -142941532 + GC_rich Low_complexity Low_complexity 1 23 0 260 208 31 83 chr6 39473716 39473812 -142941430 + LTR30 LTR ERV1 552 642 -80 668 131 0 0 chr6 39473815 39473914 -142941328 + LTR12 LTR ERV1 615 713 -1 979 143 10 17 chr6 39473914 39474242 -142941000 - MER21A LTR ERV1 -431 432 83 2349 88 3 0 chr6 39474260 39474545 -142940697 - AluSg SINE Alu -24 286 1 357 240 27 103 chr6 39474545 39474626 -142940616 - L1M4 LINE L1 -1861 4285 4218 1975 147 7 0 chr6 39474626 39474940 -142940302 + AluSx SINE Alu 1 312 0 357 240 27 103 chr6 39474940 39475004 -142940238 - L1M4 LINE L1 -1928 4218 4151 6733 69 14 48 chr6 39475005 39475992 -142939250 - SVA Other Other 0 1386 433 27 49 0 0 chr6 39476014 39476055 -142939187 + GC_rich Low_complexity Low_complexity 1 41 0 1873 104 13 74 chr6 39476060 39476522 -142938720 - SVA Other Other -520 866 433 2875 79 25 82 chr6 39476539 39477305 -142937937 - SVA Other Other -518 868 393 21 36 0 0 chr6 39477356 39477384 -142937858 + GC_rich Low_complexity Low_complexity 1 28 0 398 315 9 0 chr6 39477458 39477569 -142937673 + MLT1K LTR MaLR 69 180 -408 1500 286 81 14 chr6 39477570 39477988 -142937254 - L1M4 LINE L1 -1975 4171 3714 225 0 0 0 chr6 39477988 39478013 -142937229 + (TG)n Simple_repeat Simple_repeat 2 26 0 1500 286 81 14 chr6 39478013 39478222 -142937020 - L1M4 LINE L1 -2432 3714 3520 718 152 53 0 chr6 39478222 39478354 -142936888 - L1MC3 LINE L1 0 7785 3458 1028 172 18 0 chr6 39478357 39478547 -142936695 - AluJ SINE Alu 0 312 120 1125 216 138 17 chr6 39478550 39478660 -142936582 - L1MC3 LINE L1 -2924 3222 3127 1910 163 13 16 chr6 39478660 39478973 -142936269 - AluJb SINE Alu 0 312 1 1125 216 138 17 chr6 39478973 39479072 -142936170 - L1MC3 LINE L1 -3019 3127 3041 804 148 0 15 chr6 39479072 39479207 -142936035 - AluJ SINE Alu -169 133 1 1125 216 138 17 chr6 39479207 39479458 -142935784 - L1MC3 LINE L1 -3105 3041 2705 2439 94 0 0 chr6 39479467 39479774 -142935468 - AluSx SINE Alu -5 307 1 1825 148 0 70 chr6 39479940 39480271 -142934971 + AluJb SINE Alu 1 308 -4 485 152 87 51 chr6 39480621 39480759 -142934483 + FLAM_C SINE Alu 1 143 0 252 221 0 0 chr6 39481703 39481780 -142933462 + (CGG)n Simple_repeat Simple_repeat 1 77 0 646 143 109 0 chr6 39483671 39483790 -142931452 + FLAM_C SINE Alu 1 132 -1 1104 173 154 30 chr6 39484015 39484137 -142931105 - AluSg1 SINE Alu -10 299 194 1267 155 51 127 chr6 39484137 39484341 -142930901 - AluSx SINE Alu 0 312 94 2364 95 0 3 chr6 39484341 39484647 -142930595 - AluY SINE Alu -6 305 1 207 0 0 0 chr6 39484647 39484670 -142930572 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1267 155 51 127 chr6 39484670 39484816 -142930426 - AluSx SINE Alu -216 96 3 1104 173 154 30 chr6 39484816 39484846 -142930396 - AluSg1 SINE Alu -115 194 169 1552 127 68 93 chr6 39484846 39485231 -142930011 - THE1C LTR MaLR 0 375 1 1104 173 154 30 chr6 39485231 39485343 -142929899 - AluSg1 SINE Alu -140 169 1 305 256 0 33 chr6 39485659 39485749 -142929493 + L3 LINE CR1 1490 1576 -1 3344 110 85 2 chr6 39486041 39486616 -142928626 - Tigger3b DNA MER2_type 0 1231 609 842 168 0 28 chr6 39486632 39486775 -142928467 - FLAM_A SINE Alu -3 139 1 2620 118 102 82 chr6 39486776 39487201 -142928041 - Tigger3b DNA MER2_type -2397 631 189 1853 163 20 3 chr6 39487201 39487496 -142927746 - AluJb SINE Alu -12 300 1 2620 118 102 82 chr6 39487496 39487688 -142927554 - Tigger3b DNA MER2_type -2839 189 2 243 280 203 25 chr6 39487816 39487934 -142927308 - L2 LINE L2 -10 3262 3124 2010 142 3 3 chr6 39488351 39488646 -142926596 + AluSx SINE Alu 7 301 -11 1202 190 23 5 chr6 39488938 39489154 -142926088 - AluJo SINE Alu -92 220 1 24 77 0 0 chr6 39489191 39489243 -142925999 + AT_rich Low_complexity Low_complexity 1 52 0 1869 176 10 0 chr6 39489283 39489579 -142925663 - AluJb SINE Alu -13 299 1 623 203 0 30 chr6 39490805 39490938 -142924304 + AluJb SINE Alu 165 293 -19 2399 100 0 3 chr6 39491172 39491483 -142923759 - AluSg SINE Alu 0 310 1 1710 129 13 93 chr6 39491483 39491794 -142923448 - AluJo SINE Alu -15 297 12 1790 163 3 23 chr6 39491908 39492214 -142923028 - AluJb SINE Alu -12 300 1 2392 94 0 0 chr6 39492229 39492536 -142922706 - AluSg SINE Alu -3 307 1 1703 192 3 3 chr6 39493012 39493304 -142921938 + AluJb SINE Alu 1 292 -20 1002 182 0 12 chr6 39493809 39493974 -142921268 + FRAM SINE Alu 1 160 -16 1755 94 126 12 chr6 39493977 39494258 -142920984 + AluSg SINE Alu 1 310 0 1927 138 39 0 chr6 39494313 39494596 -142920646 - AluSx SINE Alu -18 294 1 807 150 0 0 chr6 39494623 39494743 -142920499 + FLAM_C SINE Alu 6 125 -18 2219 111 0 0 chr6 39494758 39495047 -142920195 - AluSx SINE Alu -19 293 5 370 250 66 52 chr6 39495740 39495876 -142919366 + LTR67 LTR ERVL 420 557 0 1466 205 30 17 chr6 39496007 39496304 -142918938 - AluJo SINE Alu -11 301 1 2162 125 3 0 chr6 39496480 39496777 -142918465 - AluSx SINE Alu -14 298 1 1599 137 44 0 chr6 39497752 39498001 -142917241 + AluJo SINE Alu 1 260 -52 493 113 0 0 chr6 39498013 39498084 -142917158 + AluJ/FRAM SINE Alu 232 302 -10 2268 97 13 10 chr6 39498954 39499264 -142915978 - AluSx SINE Alu -1 311 1 309 233 81 0 chr6 39499456 39499542 -142915700 + MIR SINE MIR 120 212 -50 2433 90 0 10 chr6 39500146 39500457 -142914785 - AluSx SINE Alu -4 308 1 2430 81 0 0 chr6 39501035 39501330 -142913912 - AluY SINE Alu -15 296 2 2084 135 3 0 chr6 39501517 39501805 -142913437 - AluSp SINE Alu -23 290 2 6150 52 3 0 chr6 39501835 39502578 -142912664 + L1PA5 LINE L1 5405 6149 -5 2203 105 10 0 chr6 39502846 39503140 -142912102 - AluSc SINE Alu -12 297 1 2377 85 0 23 chr6 39503200 39503507 -142911735 - AluSx SINE Alu -12 300 1 343 305 120 15 chr6 39503907 39504107 -142911135 + MLT1J LTR MaLR 253 473 -38 292 338 65 0 chr6 39504733 39504887 -142910355 + L2 LINE L2 3112 3275 -38 2400 88 0 0 chr6 39505391 39505696 -142909546 + AluY SINE Alu 1 305 -6 2362 89 0 0 chr6 39506116 39506408 -142908834 - AluSg SINE Alu -18 292 1 2256 104 0 10 chr6 39506822 39507129 -142908113 - AluSx SINE Alu -8 304 1 1960 129 39 0 chr6 39507145 39507424 -142907818 + AluSx SINE Alu 1 290 -22 1035 149 0 11 chr6 39507426 39507607 -142907635 - L1MB3 LINE L1 0 6183 6005 972 146 19 13 chr6 39507607 39507765 -142907477 + FRAM SINE Alu 1 158 -18 518 174 9 0 chr6 39507810 39507919 -142907323 + CT-rich Low_complexity Low_complexity 1 110 0 1709 177 0 30 chr6 39507926 39508231 -142907011 - AluJo SINE Alu -3 309 14 34 0 0 0 chr6 39508248 39508282 -142906960 + AT_rich Low_complexity Low_complexity 1 34 0 2136 105 7 0 chr6 39508282 39508568 -142906674 - AluSx SINE Alu -24 288 1 647 221 0 0 chr6 39508572 39508694 -142906548 - FLAM_A SINE Alu -8 125 4 1071 133 23 0 chr6 39508694 39508867 -142906375 - L1MB3 LINE L1 -212 5971 5795 2175 103 7 0 chr6 39508871 39509181 -142906061 - AluSx SINE Alu 0 312 1 2173 85 43 0 chr6 39509274 39509577 -142905665 - AluY SINE Alu 0 311 1 189 0 0 0 chr6 39509796 39509817 -142905425 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1646 86 9 0 chr6 39510355 39510565 -142904677 + AluSg/x SINE Alu 98 309 -1 226 253 20 61 chr6 39511454 39511553 -142903689 + MIR SINE MIR 104 198 -64 1440 109 47 0 chr6 39511573 39511766 -142903476 + AluSq SINE Alu 1 202 -111 24 0 0 0 chr6 39511825 39511849 -142903393 + AT_rich Low_complexity Low_complexity 1 24 0 387 137 13 6 chr6 39511865 39512100 -142903142 + AluJo SINE Alu 13 281 -21 5713 139 58 33 chr6 39512162 39513100 -142902142 - L1MC1 LINE L1 -5 6328 5360 1730 181 10 7 chr6 39513100 39513388 -142901854 - AluJo SINE Alu -23 289 1 5713 139 58 33 chr6 39513388 39513570 -142901672 - L1MC1 LINE L1 -973 5360 5184 2090 97 40 30 chr6 39513738 39514036 -142901206 - AluSx SINE Alu -10 302 2 189 0 0 0 chr6 39514037 39514058 -142901184 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 1556 147 3 46 chr6 39514058 39514343 -142900899 - AluJb SINE Alu 0 312 40 2720 172 73 21 chr6 39514370 39514929 -142900313 + L1MB5 LINE L1 5443 6030 -144 2282 94 7 3 chr6 39514929 39515237 -142900005 - AluY SINE Alu -2 309 1 306 0 0 0 chr6 39516036 39516070 -142899172 + (TG)n Simple_repeat Simple_repeat 2 35 0 356 271 133 14 chr6 39516489 39516687 -142898555 + L1M4 LINE L1 4470 4696 -1450 1603 160 20 49 chr6 39516687 39516993 -142898249 - AluJb SINE Alu -15 297 1 356 271 133 14 chr6 39516993 39517004 -142898238 + L1M4 LINE L1 4696 4704 -1442 749 238 14 59 chr6 39517005 39517252 -142897990 - L1MC5 LINE L1 -37 7924 7690 2533 57 7 0 chr6 39517252 39517549 -142897693 + AluY SINE Alu 1 299 -12 749 238 14 59 chr6 39517549 39517587 -142897655 - L1MC5 LINE L1 -271 7690 7652 * 1021 180 34 114 chr6 39517582 39517932 -142897310 - L1MC5 LINE L1 -890 7071 6750 485 181 63 0 chr6 39518054 39518181 -142897061 - L1MA4 LINE L1 -1 6299 6165 1175 144 77 0 chr6 39518341 39518522 -142896720 - MER21B LTR ERV1 -368 495 301 2864 212 57 76 chr6 39518524 39519587 -142895655 + L1M4 LINE L1 3400 4442 -1704 2196 110 0 0 chr6 39519606 39519888 -142895354 - AluSx SINE Alu -30 282 1 357 24 0 0 chr6 39519892 39519934 -142895308 + (TG)n Simple_repeat Simple_repeat 2 43 0 450 160 27 0 chr6 39519943 39520018 -142895224 - FAM SINE Alu -37 148 72 1839 138 20 40 chr6 39520018 39520111 -142895131 + AluJb SINE Alu 1 94 -218 2184 76 36 50 chr6 39520111 39520414 -142894828 + AluSq SINE Alu 1 299 -14 1839 138 20 40 chr6 39520414 39520624 -142894618 + AluJb SINE Alu 94 298 -14 1680 113 13 9 chr6 39520628 39520857 -142894385 + AluSx SINE Alu 1 230 -82 391 219 50 25 chr6 39520909 39521028 -142894214 + L1MC5 LINE L1 7807 7928 -33 379 263 81 12 chr6 39521042 39521202 -142894040 + L1MC4a LINE L1 5797 5967 -1841 278 349 92 7 chr6 39521396 39521548 -142893694 - MIR3 SINE MIR -6 202 38 1703 175 0 17 chr6 39521861 39522152 -142893090 + AluJb SINE Alu 3 288 -24 589 139 209 0 chr6 39522273 39522388 -142892854 - FLAM_C SINE Alu 0 143 5 2403 94 3 0 chr6 39522562 39522869 -142892373 - AluSq SINE Alu -5 308 1 1144 179 153 0 chr6 39522875 39523104 -142892138 - AluJo SINE Alu -16 296 33 862 103 0 89 chr6 39523115 39523261 -142891981 - FLAM_C SINE Alu 0 133 1 327 152 0 0 chr6 39523303 39523349 -142891893 - AluJo SINE Alu -252 47 2 29 47 0 0 chr6 39523619 39523662 -142891580 + AT_rich Low_complexity Low_complexity 1 43 0 2576 59 3 0 chr6 39524213 39524520 -142890722 - AluY SINE Alu -3 308 1 191 321 95 15 chr6 39524965 39525102 -142890140 + L2 LINE L2 2482 2629 -685 632 153 0 42 chr6 39525165 39525283 -142889959 + AluJ SINE Alu 38 150 -162 37 0 0 0 chr6 39525283 39525320 -142889922 + AT_rich Low_complexity Low_complexity 1 37 0 1009 145 0 0 chr6 39525324 39525469 -142889773 + AluJ SINE Alu 156 300 -12 2538 65 3 0 chr6 39525525 39525833 -142889409 - AluY SINE Alu -2 309 1 1466 135 9 135 chr6 39525835 39526030 -142889212 - AluJb SINE Alu -8 294 76 1508 163 82 35 chr6 39526030 39526312 -142888930 - AluSq SINE Alu -18 295 1 1466 135 9 135 chr6 39526312 39526324 -142888918 - AluJb SINE Alu -226 76 64 246 32 0 0 chr6 39526324 39526355 -142888887 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1466 135 9 135 chr6 39526355 39526480 -142888762 - AluJb SINE Alu -238 64 3 1773 157 0 42 chr6 39527264 39527576 -142887666 + AluJo SINE Alu 5 303 -9 2356 71 0 0 chr6 39528260 39528567 -142886675 + AluSp SINE Alu 1 307 0 2394 80 0 0 chr6 39528648 39528947 -142886295 - AluY SINE Alu -12 299 1 2178 102 7 3 chr6 39528981 39529290 -142885952 + AluSq SINE Alu 1 310 0 4434 164 70 24 chr6 39529317 39529378 -142885864 - L1MB5 LINE L1 0 6174 6117 2369 88 0 0 chr6 39529378 39529673 -142885569 + AluY SINE Alu 1 295 -16 4434 164 70 24 chr6 39529673 39530761 -142884481 - L1MB5 LINE L1 -57 6117 4962 1768 150 45 17 chr6 39530774 39531061 -142884181 - AluJo SINE Alu -17 295 1 225 0 0 0 chr6 39532014 39532039 -142883203 + (T)n Simple_repeat Simple_repeat 1 25 0 194 250 42 86 chr6 39533766 39533887 -142881355 + MIR SINE MIR 6 136 -72 725 270 203 22 chr6 39534048 39534403 -142880839 - MLT1L LTR MaLR -74 541 123 772 188 7 36 chr6 39534577 39534715 -142880527 - MER58A DNA MER1_type -54 170 37 519 208 0 0 chr6 39534745 39534846 -142880396 + MER5A DNA MER1_type 9 109 -80 523 223 89 19 chr6 39535312 39535469 -142879773 + LTR67 LTR ERVL 383 550 -7 187 390 0 0 chr6 39535740 39535817 -142879425 - L2 LINE L2 0 3313 3237 1410 205 55 3 chr6 39537639 39537985 -142877257 + L1 LINE L1 5031 5394 -752 1844 94 70 0 chr6 39538049 39538320 -142876922 - AluSx SINE Alu 0 310 23 445 133 33 0 chr6 39538335 39538425 -142876817 + L1MA5 LINE L1 6206 6298 -2 829 144 8 0 chr6 39538442 39538574 -142876668 + FLAM_A SINE Alu 1 133 0 30 0 0 0 chr6 39538886 39538916 -142876326 + AT_rich Low_complexity Low_complexity 1 30 0 305 100 20 0 chr6 39539328 39539378 -142875864 + (TC)n Simple_repeat Simple_repeat 1 51 0 1307 181 105 11 chr6 39539394 39539670 -142875572 - AluJo SINE Alu 0 302 1 2131 104 24 7 chr6 39539674 39539972 -142875270 - AluSx SINE Alu -9 303 1 269 203 110 76 chr6 39540671 39540789 -142874453 - MIR SINE MIR -94 168 47 226 191 0 0 chr6 39540826 39540868 -142874374 + L1ME4a LINE L1 5974 6015 -106 1016 179 0 12 chr6 39541577 39541744 -142873498 + MER2 DNA MER2_type 24 188 -157 467 129 0 14 chr6 39541744 39541814 -142873428 + Tigger2 DNA MER2_type 1 69 -2649 * 2251 114 43 48 chr6 39541797 39542190 -142873052 + Tigger2 DNA MER2_type 2267 2657 -61 1304 148 8 66 chr6 39542205 39542448 -142872794 + AluJo SINE Alu 63 291 -21 288 150 133 33 chr6 39542449 39542509 -142872733 + Tigger2 DNA MER2_type 2651 2716 -2 684 177 106 7 chr6 39542527 39542668 -142872574 + MER2 DNA MER2_type 191 345 0 2197 126 0 0 chr6 39543174 39543467 -142871775 + AluSx SINE Alu 1 293 -19 1936 171 0 13 chr6 39543498 39543813 -142871429 - AluJb SINE Alu 0 312 2 6822 53 2 0 chr6 39543884 39544673 -142870569 + L1PA5 LINE L1 5360 6150 -4 2387 82 0 0 chr6 39544748 39545040 -142870202 + AluSq SINE Alu 1 292 -21 267 203 0 0 chr6 39545056 39545130 -142870112 + (TA)n Simple_repeat Simple_repeat 1 74 0 852 172 35 0 chr6 39545653 39545798 -142869444 + FRAM SINE Alu 10 159 -17 364 104 75 0 chr6 39545833 39545900 -142869342 + L1ME4a LINE L1 6049 6120 -1 527 176 0 20 chr6 39545967 39546069 -142869173 + L1MA9 LINE L1 6208 6307 -5 355 141 26 250 chr6 39546076 39546158 -142869084 - Charlie8 DNA MER1_type -2236 181 82 4350 164 48 77 chr6 39546158 39546776 -142868466 + LTR13 LTR ERVK 1 581 -373 2453 73 7 3 chr6 39546776 39547078 -142868164 - AluSc SINE Alu -6 303 1 4350 164 48 77 chr6 39547078 39547442 -142867800 + LTR13 LTR ERVK 581 954 0 2246 98 0 0 chr6 39547444 39547730 -142867512 + AluSx SINE Alu 17 302 -10 355 141 26 250 chr6 39547730 39547800 -142867442 - Charlie8 DNA MER1_type -2336 81 61 1610 155 84 18 chr6 39548820 39549104 -142866138 + AluJo SINE Alu 3 305 -7 800 188 20 7 chr6 39549760 39549909 -142865333 + FRAM SINE Alu 1 151 -25 2051 125 7 7 chr6 39549959 39550256 -142864986 - AluSx SINE Alu -15 297 1 344 257 74 35 chr6 39550481 39550683 -142864559 - L1MC4 LINE L1 -9 8033 7824 233 109 22 0 chr6 39550686 39550732 -142864510 + CT-rich Low_complexity Low_complexity 2 48 0 1800 175 20 0 chr6 39550735 39551038 -142864204 - AluJb SINE Alu -3 309 1 2732 133 54 9 chr6 39551075 39551518 -142863724 - L1PA16 LINE L1 -1 6165 5703 460 251 38 93 chr6 39551546 39551800 -142863442 - L1MC5 LINE L1 -271 7690 7461 2450 68 3 0 chr6 39551800 39552094 -142863148 + AluY SINE Alu 1 295 -16 460 251 38 93 chr6 39552094 39552206 -142863036 - L1MC5 LINE L1 -500 7461 7344 439 209 0 33 chr6 39552212 39552303 -142862939 + MER3 DNA MER1_type 1 88 -121 292 213 0 0 chr6 39552322 39552369 -142862873 + MER66A LTR ERV1 292 338 -140 623 195 8 0 chr6 39552388 39552506 -142862736 - MER3 DNA MER1_type -50 159 41 226 247 55 0 chr6 39552510 39552583 -142862659 - L1MC4 LINE L1 -547 7495 7419 2094 109 3 3 chr6 39552857 39553173 -142862069 - AluSx SINE Alu 0 316 1 1879 148 14 10 chr6 39553480 39553777 -142861465 - AluJb SINE Alu -14 298 1 2119 121 10 3 chr6 39553807 39554113 -142861129 + AluSg SINE Alu 1 308 -2 4480 153 56 65 chr6 39554308 39555242 -142860000 + MER21A LTR ERV1 1 925 -6 564 253 40 87 chr6 39555399 39555466 -142859776 + L1MC4a LINE L1 5622 5691 -471 938 130 0 30 chr6 39555466 39555597 -142859645 + FLAM_C SINE Alu 1 127 -6 564 253 40 87 chr6 39555597 39555990 -142859252 + L1MC4a LINE L1 5691 5766 -396 28 0 0 0 chr6 39556334 39556362 -142858880 + AT_rich Low_complexity Low_complexity 1 28 0 413 224 224 0 chr6 39556607 39556750 -142858492 - MLT1G LTR MaLR -6 584 410 2318 235 149 39 chr6 39556780 39557657 -142857585 + L2 LINE L2 1995 2968 -346 761 180 29 7 chr6 39558166 39558305 -142856937 + AluJo SINE Alu 2 143 -169 197 164 55 73 chr6 39558587 39558642 -142856600 - L3b LINE CR1 -8 1575 1522 303 200 0 0 chr6 39558811 39558866 -142856376 + L1MC/D LINE L1 5434 5488 -871 242 375 42 10 chr6 39559360 39559456 -142855786 + MIR SINE MIR 38 136 -72 2000 138 0 20 chr6 39559753 39560058 -142855184 - AluSx SINE Alu -13 299 1 970 131 0 0 chr6 39560058 39560188 -142855054 - AluSq/x SINE Alu -182 130 1 2416 78 3 0 chr6 39560218 39560513 -142854729 - AluSp SINE Alu -17 296 1 1187 59 0 0 chr6 39560513 39560648 -142854594 - AluY SINE Alu -176 135 1 3511 138 17 44 chr6 39560655 39561125 -142854117 - L1MC1 LINE L1 -13 6600 6150 1997 144 0 25 chr6 39561125 39561444 -142853798 - AluSx SINE Alu -1 311 1 3511 138 17 44 chr6 39561444 39561611 -142853631 - L1MC1 LINE L1 -463 6150 5980 466 128 81 0 chr6 39561611 39561697 -142853545 + L1M4 LINE L1 4754 4846 -1300 * 1237 169 67 24 chr6 39561686 39561911 -142853331 - L1MC1 LINE L1 -505 5946 5754 2247 107 3 3 chr6 39561911 39562210 -142853032 - AluSx SINE Alu -13 299 1 1237 169 67 24 chr6 39562210 39562234 -142853008 - L1MC1 LINE L1 -697 5754 5732 * 7629 213 100 68 chr6 39562232 39563764 -142851478 - L1MC1 LINE L1 -983 5443 3961 189 0 0 0 chr6 39563764 39563785 -142851457 + (TGG)n Simple_repeat Simple_repeat 1 21 0 7629 213 100 68 chr6 39563785 39563797 -142851445 - L1MC1 LINE L1 -2465 3961 3951 2108 116 3 0 chr6 39563797 39564081 -142851161 - AluSx SINE Alu -27 285 1 1645 188 3 3 chr6 39564081 39564378 -142850864 - AluJo SINE Alu -14 298 1 7629 213 100 68 chr6 39564378 39565097 -142850145 - L1MC1 LINE L1 -2475 3951 3256 957 150 0 0 chr6 39565097 39565230 -142850012 - FLAM_C SINE Alu 0 133 1 7629 213 100 68 chr6 39565230 39565850 -142849392 - L1MC1 LINE L1 -3170 3256 2462 1710 171 3 20 chr6 39565850 39566155 -142849087 - AluJb SINE Alu -12 300 1 2273 115 3 6 chr6 39566179 39566492 -142848750 - AluSx SINE Alu 0 312 1 927 111 100 6 chr6 39566492 39566672 -142848570 - L1MC1 LINE L1 -3962 2464 2268 1839 140 11 0 chr6 39566747 39567032 -142848210 - AluJo SINE Alu -24 288 1 21 57 0 0 chr6 39567037 39567072 -142848170 + AT_rich Low_complexity Low_complexity 1 35 0 738 198 8 0 chr6 39567072 39567198 -142848044 - FLAM_A SINE Alu -3 130 4 921 278 91 60 chr6 39568065 39569003 -142846239 + L1ME3A LINE L1 2429 3395 -2751 2221 117 3 7 chr6 39569045 39569353 -142845889 + AluSx SINE Alu 1 307 -5 1909 142 3 40 chr6 39569357 39569681 -142845561 + AluJb SINE Alu 1 312 0 188 32 97 0 chr6 39569882 39569913 -142845329 + CT-rich Low_complexity Low_complexity 1 34 0 834 177 15 0 chr6 39569913 39570043 -142845199 - FLAM_C SINE Alu 0 133 2 2104 128 10 3 chr6 39570053 39570358 -142844884 - AluSq SINE Alu -6 307 1 1218 208 14 0 chr6 39570363 39570575 -142844667 - MER58A DNA MER1_type -9 215 1 832 259 68 46 chr6 39570643 39571057 -142844185 + L1ME3A LINE L1 3912 4334 -1812 840 182 6 94 chr6 39571063 39571244 -142843998 + AluJb SINE Alu 83 247 -65 2279 90 7 10 chr6 39571568 39571878 -142843364 - AluSx SINE Alu -3 309 1 230 229 64 28 chr6 39571909 39572018 -142843224 + L1ME3A LINE L1 5119 5231 -915 1499 151 9 0 chr6 39572040 39572265 -142842977 + AluJb SINE Alu 42 268 -44 207 0 0 0 chr6 39572275 39572298 -142842944 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1797 225 127 26 chr6 39572554 39573051 -142842191 - MLT1H LTR MaLR 0 549 3 369 302 0 0 chr6 39573181 39573310 -142841932 + L1ME3A LINE L1 5755 5883 -287 1742 101 21 116 chr6 39574281 39574414 -142840828 + AluJo SINE Alu 1 145 -157 2038 125 17 0 chr6 39574414 39574703 -142840539 - AluSx SINE Alu -16 296 3 1742 101 21 116 chr6 39574703 39574896 -142840346 + AluJo SINE Alu 145 296 -6 732 161 40 16 chr6 39575584 39575708 -142839534 + FLAM_A SINE Alu 1 127 -6 1863 148 14 7 chr6 39575952 39576249 -142838993 - AluJb SINE Alu -13 299 1 1908 89 35 98 chr6 39576434 39576569 -142838673 + AluSg SINE Alu 1 143 -167 261 0 0 0 chr6 39576569 39576598 -142838644 + (TA)n Simple_repeat Simple_repeat 1 29 0 1908 89 35 98 chr6 39576598 39576778 -142838464 + AluSg SINE Alu 143 296 -14 2332 81 7 3 chr6 39577097 39577393 -142837849 + AluY SINE Alu 1 297 -14 256 346 0 30 chr6 39577599 39577700 -142837542 + L2 LINE L2 3216 3313 0 309 51 0 0 chr6 39577713 39577752 -142837490 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2074 121 0 0 chr6 39577757 39578037 -142837205 - AluJb SINE Alu -32 280 1 1449 191 11 15 chr6 39578047 39578309 -142836933 - AluJo SINE Alu -17 295 35 1856 149 16 13 chr6 39578779 39579088 -142836154 - AluJo SINE Alu -2 310 1 23 0 0 0 chr6 39579192 39579215 -142836027 + AT_rich Low_complexity Low_complexity 1 23 0 809 196 0 15 chr6 39579403 39579536 -142835706 + FLAM_C SINE Alu 2 132 -11 2235 109 3 0 chr6 39579589 39579883 -142835359 - AluSx SINE Alu -16 296 2 21 0 0 0 chr6 39579883 39579904 -142835338 + AT_rich Low_complexity Low_complexity 1 21 0 1074 96 0 7 chr6 39579907 39580043 -142835199 + AluJb SINE Alu 1 135 -177 1645 192 11 3 chr6 39580043 39580329 -142834913 + AluJb SINE Alu 1 288 -24 200 255 0 0 chr6 39580346 39580397 -142834845 + G-rich Low_complexity Low_complexity 6 56 0 1688 199 3 0 chr6 39580969 39581265 -142833977 + AluJo SINE Alu 3 299 -13 189 313 70 17 chr6 39581485 39581600 -142833642 - L2 LINE L2 -12 3301 3181 47 67 0 0 chr6 39581670 39581759 -142833483 + AT_rich Low_complexity Low_complexity 1 89 0 335 256 72 63 chr6 39582286 39582509 -142832733 + L1ME LINE L1 5604 5828 -293 2128 110 11 0 chr6 39582534 39582816 -142832426 + AluSx SINE Alu 9 293 -19 265 314 88 42 chr6 39582830 39583069 -142832173 + L1ME LINE L1 5479 5728 -393 2186 115 3 0 chr6 39583072 39583367 -142831875 + AluSx SINE Alu 3 298 -14 989 154 0 0 chr6 39583367 39583537 -142831705 + AluSg/x SINE Alu 132 301 0 257 195 26 91 chr6 39583549 39583626 -142831616 + L1ME LINE L1 5745 5816 -305 749 159 19 0 chr6 39583640 39583747 -142831495 - AluJb SINE Alu -31 281 173 1246 229 78 14 chr6 39583807 39584091 -142831151 + AluJb SINE Alu 1 302 0 465 254 144 35 chr6 39584173 39584374 -142830868 - MIR SINE MIR -35 227 5 1943 141 3 0 chr6 39584761 39585044 -142830198 - AluJb SINE Alu -28 284 1 27 0 0 0 chr6 39585935 39585962 -142829280 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr6 39586361 39586388 -142828854 + AT_rich Low_complexity Low_complexity 1 27 0 2214 94 42 0 chr6 39587252 39587539 -142827703 + AluSq SINE Alu 3 301 -12 2127 145 3 0 chr6 39587948 39588252 -142826990 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr6 39589774 39589796 -142825446 + AT_rich Low_complexity Low_complexity 1 22 0 2498 79 0 0 chr6 39590826 39591131 -142824111 + AluSg SINE Alu 1 305 -5 237 263 211 0 chr6 39596859 39596973 -142818269 + MIR SINE MIR 59 196 -66 193 291 106 34 chr6 39597211 39597390 -142817852 - L2 LINE L2 -402 2912 2721 245 289 35 95 chr6 39597557 39597872 -142817370 + L1M4 LINE L1 4630 4925 -1221 537 170 9 0 chr6 39597882 39597988 -142817254 + FRAM SINE Alu 56 162 -14 2090 108 31 14 chr6 39597990 39598278 -142816964 + AluSx SINE Alu 8 300 -12 183 80 0 0 chr6 39598438 39598463 -142816779 + (A)n Simple_repeat Simple_repeat 1 25 0 320 240 73 0 chr6 39598886 39598982 -142816260 - MIR3 SINE MIR -8 200 98 2180 123 0 7 chr6 39599097 39599389 -142815853 + AluSx SINE Alu 1 290 -22 2095 84 0 18 chr6 39599549 39599823 -142815419 - AluSc SINE Alu -13 296 28 279 242 20 30 chr6 39599912 39600011 -142815231 + L2 LINE L2 1859 1956 -1358 197 409 27 23 chr6 39600061 39600281 -142814961 + L2 LINE L2 2751 2971 -343 2778 39 0 3 chr6 39601122 39601434 -142813808 + AluY SINE Alu 1 311 0 28 22 0 22 chr6 39602228 39602246 -142812996 + AT_rich Low_complexity Low_complexity 1 18 -27 1928 159 3 0 chr6 39602246 39602536 -142812706 + AluJo SINE Alu 1 291 -21 28 22 0 22 chr6 39602536 39602563 -142812679 + AT_rich Low_complexity Low_complexity 18 45 0 481 177 0 15 chr6 39602570 39602667 -142812575 + AluJ/FLAM SINE Alu 1 69 -233 745 236 5 31 chr6 39602667 39602858 -142812384 - AluJo SINE Alu -126 186 1 1132 148 11 5 chr6 39602868 39603048 -142812194 - AluSq SINE Alu -3 310 127 252 0 0 0 chr6 39603048 39603076 -142812166 + (TG)n Simple_repeat Simple_repeat 1 28 0 1491 70 0 0 chr6 39603446 39603631 -142811611 + AluY SINE Alu 127 311 0 1994 147 7 3 chr6 39603720 39604013 -142811229 - AluJb SINE Alu -18 294 1 2490 85 0 0 chr6 39604094 39604400 -142810842 - AluY SINE Alu -5 306 1 1255 140 55 0 chr6 39604402 39604566 -142810676 - AluSg/x SINE Alu -17 295 117 261 0 0 0 chr6 39604566 39604595 -142810647 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1255 140 55 0 chr6 39604595 39604630 -142810612 - AluSg/x SINE Alu -195 117 85 346 88 0 19 chr6 39604630 39604767 -142810475 - AluY SINE Alu -52 249 59 1354 129 0 10 chr6 39604769 39604962 -142810280 - AluSx SINE Alu -121 191 1 1016 276 40 40 chr6 39605023 39605422 -142809820 - L1ME3A LINE L1 -233 5937 5539 312 326 0 31 chr6 39605439 39605537 -142809705 - L1MEd LINE L1 -4674 1457 1363 25 0 0 0 chr6 39605547 39605572 -142809670 + AT_rich Low_complexity Low_complexity 1 25 0 2008 143 3 27 chr6 39605572 39605873 -142809369 - AluSg SINE Alu -16 294 1 2459 90 0 19 chr6 39606053 39606226 -142809016 - AluSx SINE Alu -6 306 140 243 0 0 0 chr6 39606236 39606263 -142808979 + (TA)n Simple_repeat Simple_repeat 2 28 0 2520 56 0 13 chr6 39606263 39606558 -142808684 - AluSx SINE Alu -19 293 1 2459 90 0 19 chr6 39606558 39606696 -142808546 - AluSx SINE Alu -172 140 1 597 314 89 34 chr6 39606698 39607291 -142807951 - L1MEd LINE L1 -4936 1183 558 419 234 88 39 chr6 39607574 39607779 -142807463 + MLT1K LTR MaLR 215 429 -159 189 0 0 0 chr6 39607942 39607963 -142807279 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 2004 156 3 0 chr6 39607964 39608252 -142806990 - AluJb SINE Alu -23 289 1 2016 136 31 0 chr6 39608687 39608974 -142806268 - AluSx SINE Alu -16 296 1 2506 53 0 17 chr6 39608985 39609284 -142805958 - AluY SINE Alu -16 295 2 2358 98 3 0 chr6 39609294 39609591 -142805651 - AluSx SINE Alu -14 298 1 2107 137 0 0 chr6 39609602 39609930 -142805312 - AluSx SINE Alu 0 328 1 893 158 23 0 chr6 39609939 39610072 -142805170 - AluJo SINE Alu -176 136 1 363 182 34 34 chr6 39610146 39610234 -142805008 + MIR SINE MIR 98 185 -77 418 214 24 0 chr6 39610532 39610616 -142804626 + MIR SINE MIR 79 164 -98 1713 118 0 0 chr6 39610650 39610871 -142804371 - AluSq SINE Alu -91 222 2 265 122 0 0 chr6 39610872 39610913 -142804329 + MIR SINE MIR 153 193 -69 3707 166 171 16 chr6 39610914 39612307 -142802935 + MER52A LTR ERV1 1 1755 0 2226 119 0 3 chr6 39612366 39612661 -142802581 - AluSx SINE Alu -15 297 4 2148 78 0 106 chr6 39614446 39614777 -142800465 - AluSg SINE Alu -4 306 11 535 258 46 7 chr6 39614795 39614946 -142800296 + MIR SINE MIR 106 262 0 18854 124 36 34 chr6 39615018 39616277 -142798965 + L1M1 LINE L1 12 1267 -6298 3346 84 30 14 chr6 39616277 39616779 -142798463 - MER75 DNA T2_type 0 514 5 18854 124 36 34 chr6 39616779 39617236 -142798006 + L1M1 LINE L1 1267 1721 -5844 429 20 0 0 chr6 39617236 39617286 -142797956 + (GGGAGA)n Simple_repeat Simple_repeat 5 54 0 18854 124 36 34 chr6 39617286 39617908 -142797334 + L1M1 LINE L1 1721 2340 -5225 2308 96 7 0 chr6 39617908 39618201 -142797041 - AluSp SINE Alu -18 295 1 18854 124 36 34 chr6 39618201 39618234 -142797008 + L1M1 LINE L1 2340 2371 -5194 2237 124 3 0 chr6 39618234 39618541 -142796701 + AluSx SINE Alu 1 308 -4 18854 124 36 34 chr6 39618541 39619353 -142795889 + L1M1 LINE L1 2371 3205 -4360 510 196 0 0 chr6 39619359 39619466 -142795776 + CT-rich Low_complexity Low_complexity 3 109 0 1838 188 0 6 chr6 39619468 39619782 -142795460 - AluSx SINE Alu 0 312 1 326 322 78 16 chr6 39619795 39619843 -142795399 - L1ME LINE L1 -343 5778 5734 303 28 0 0 chr6 39619843 39619879 -142795363 + (TTA)n Simple_repeat Simple_repeat 1 36 0 326 322 78 16 chr6 39619879 39620072 -142795170 - L1ME LINE L1 -387 5734 5522 2937 103 5 5 chr6 39620175 39620751 -142794491 + L1MA2 LINE L1 3238 3813 -3752 2040 157 0 7 chr6 39620762 39620895 -142794347 + AluSx SINE Alu 1 133 -179 1777 162 0 8 chr6 39620895 39621186 -142794056 + AluSx SINE Alu 24 312 0 2040 157 0 7 chr6 39621186 39621351 -142793891 + AluSx SINE Alu 133 297 -15 2334 119 0 0 chr6 39621353 39621655 -142793587 + AluSx SINE Alu 3 304 -8 12974 149 20 10 chr6 39621658 39622419 -142792823 + L1MA2 LINE L1 4139 4891 -2832 2565 127 9 41 chr6 39622419 39622697 -142792545 - MSTA LTR MaLR 0 428 168 2562 58 3 0 chr6 39622697 39622992 -142792250 - AluSp SINE Alu -17 296 1 2565 127 9 41 chr6 39622992 39623155 -142792087 - MSTA LTR MaLR -260 168 1 12974 149 20 10 chr6 39623155 39625737 -142789505 + L1MA2 LINE L1 4891 7528 -195 2246 105 20 0 chr6 39625737 39626033 -142789209 - AluSx SINE Alu -8 304 3 12974 149 20 10 chr6 39626033 39626232 -142789010 + L1MA2 LINE L1 7528 7723 0 2350 79 0 32 chr6 39626258 39626574 -142788668 + AluSg SINE Alu 3 308 -2 2257 105 0 40 chr6 39627232 39627378 -142787864 + AluSx SINE Alu 1 151 -161 2401 96 0 0 chr6 39627378 39627680 -142787562 + AluSg1 SINE Alu 1 302 -7 2257 105 0 40 chr6 39627680 39627856 -142787386 + AluSx SINE Alu 151 310 -2 327 274 21 0 chr6 39628362 39628457 -142786785 + L2 LINE L2 2609 2705 -609 1306 134 0 0 chr6 39629155 39629334 -142785908 - AluSg/x SINE Alu 0 310 132 2190 96 14 0 chr6 39629334 39629627 -142785615 - AluSx SINE Alu -15 297 1 585 212 17 8 chr6 39629646 39629764 -142785478 + FLAM_A SINE Alu 1 119 -14 368 206 81 42 chr6 39629765 39629889 -142785353 + L1MC4 LINE L1 6614 6703 -1339 249 104 0 42 chr6 39629890 39629938 -142785304 - L1MC4 LINE L1 -534 7508 7463 1814 65 5 0 chr6 39629938 39630152 -142785090 + AluY SINE Alu 1 215 -96 290 276 122 10 chr6 39631284 39631382 -142783860 - L2 LINE L2 -5 3308 3200 1412 237 52 2 chr6 39631820 39632288 -142782954 - L1ME3A LINE L1 -52 6118 5589 336 230 35 0 chr6 39632292 39632379 -142782863 + MER94 DNA DNA 31 120 -14 2262 110 0 0 chr6 39632867 39633167 -142782075 + AluSx SINE Alu 1 300 -12 2109 134 7 7 chr6 39633638 39633943 -142781299 + AluSx SINE Alu 1 305 -7 2427 86 3 0 chr6 39633945 39634248 -142780994 + AluSp SINE Alu 1 304 -9 1041 227 108 42 chr6 39634594 39634919 -142780323 + L2 LINE L2 2701 3003 -310 1680 151 23 8 chr6 39634919 39635178 -142780064 + AluSx SINE Alu 30 292 -20 1041 227 108 42 chr6 39635178 39635438 -142779804 + L2 LINE L2 3003 3313 0 2378 91 3 0 chr6 39635607 39635903 -142779339 - AluSp SINE Alu -16 297 1 2487 86 0 0 chr6 39636559 39636861 -142778381 - AluSg SINE Alu -8 302 1 603 130 0 65 chr6 39636861 39636969 -142778273 - AluSx SINE Alu -16 293 193 2329 99 3 0 chr6 39636969 39637263 -142777979 - AluSg SINE Alu -14 296 2 1488 143 0 10 chr6 39637265 39637474 -142777768 - AluSx SINE Alu -105 207 1 209 156 0 44 chr6 39637915 39637960 -142777282 + G-rich Low_complexity Low_complexity 4 46 0 223 233 58 58 chr6 39638013 39638099 -142777143 + L2 LINE L2 3184 3269 -3 226 324 0 27 chr6 39638106 39638217 -142777025 + G-rich Low_complexity Low_complexity 4 111 0 617 62 0 0 chr6 39639191 39639271 -142775971 - AluSp/q SINE Alu -20 293 214 958 230 9 0 chr6 39639923 39640149 -142775093 + MER33 DNA MER1_type 5 232 -92 594 196 75 8 chr6 39640149 39640282 -142774960 + FRAM SINE Alu 1 139 -37 405 210 8 17 chr6 39640324 39640340 -142774902 + MER33 DNA MER1_type 206 221 -2364 2264 94 21 0 chr6 39640340 39640628 -142774614 + AluSp SINE Alu 1 294 -19 405 210 8 17 chr6 39640628 39640730 -142774512 + MER33 DNA MER1_type 221 323 -1 354 240 34 126 chr6 39640733 39640908 -142774334 + L2 LINE L2 3151 3309 -4 44 80 0 0 chr6 39641464 39641564 -142773678 + GC_rich Low_complexity Low_complexity 1 100 0 310 277 25 34 chr6 39641943 39642062 -142773180 + MIR SINE MIR 61 178 -84 1536 152 0 12 chr6 39642589 39642750 -142772492 - AluJo SINE Alu -18 294 135 2004 70 4 16 chr6 39642750 39643007 -142772235 - AluSp SINE Alu -10 303 50 1536 152 0 12 chr6 39643007 39643088 -142772154 - AluJo SINE Alu -177 135 55 412 188 60 60 chr6 39643088 39643205 -142772037 - AluJ/FLAM SINE Alu -221 81 10 1639 129 0 9 chr6 39643281 39643506 -142771736 - AluSx SINE Alu -89 223 1 434 303 34 61 chr6 39643567 39643831 -142771411 + L1ME LINE L1 5522 5778 -343 2319 107 0 0 chr6 39643840 39644140 -142771102 + AluSg SINE Alu 1 300 -10 2372 102 0 0 chr6 39644142 39644445 -142770797 + AluSg SINE Alu 1 303 -7 1095 144 0 39 chr6 39644462 39644628 -142770614 - AluSx SINE Alu -21 291 131 216 0 0 0 chr6 39644628 39644652 -142770590 + (TG)n Simple_repeat Simple_repeat 1 24 0 1095 144 0 39 chr6 39644652 39644666 -142770576 - AluSx SINE Alu -181 131 118 2695 58 0 0 chr6 39645566 39645876 -142769366 - AluY SINE Alu -1 310 1 1030 117 0 0 chr6 39646214 39646351 -142768891 - AluSx SINE Alu -175 137 1 2419 197 26 91 chr6 39646428 39646790 -142768452 + L1ME1 LINE L1 4257 4641 -1505 1812 206 70 25 chr6 39646790 39647193 -142768049 - MLT1C LTR MaLR -4 463 80 1842 155 3 62 chr6 39647193 39647369 -142767873 - AluJb SINE Alu -9 303 118 2192 90 0 36 chr6 39647369 39647705 -142767537 - AluY SINE Alu 0 311 1 194 61 0 30 chr6 39647706 39647739 -142767503 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2207 88 0 18 chr6 39647739 39648023 -142767219 - AluSc SINE Alu -30 279 1 2315 105 0 3 chr6 39648025 39648321 -142766921 - AluSq SINE Alu -18 295 1 1842 155 3 62 chr6 39648321 39648460 -142766782 - AluJb SINE Alu -194 118 1 1812 206 70 25 chr6 39648460 39648498 -142766744 - MLT1C LTR MaLR -387 80 2 2419 197 26 91 chr6 39648498 39648771 -142766471 + L1ME1 LINE L1 4641 4840 -1306 2620 54 0 0 chr6 39648771 39649069 -142766173 - AluY SINE Alu -13 298 1 2419 197 26 91 chr6 39649069 39649169 -142766073 + L1ME1 LINE L1 4840 4945 -1201 612 198 24 0 chr6 39649175 39649301 -142765941 + FLAM_C SINE Alu 13 141 -2 260 51 0 26 chr6 39649301 39649340 -142765902 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1345 160 14 45 chr6 39649340 39649439 -142765803 + L1ME1 LINE L1 5004 5105 -1041 2361 101 0 0 chr6 39649439 39649737 -142765505 + AluSx SINE Alu 1 298 -14 2125 102 17 17 chr6 39649739 39650063 -142765179 + AluSx SINE Alu 3 312 0 1345 160 14 45 chr6 39650063 39650247 -142764995 + L1ME1 LINE L1 5106 5281 -865 1518 140 126 35 chr6 39650251 39650537 -142764705 + AluSx SINE Alu 1 312 0 706 238 0 0 chr6 39650546 39650689 -142764553 + AluJb SINE Alu 164 306 -6 1506 188 57 108 chr6 39650764 39650847 -142764395 + L1ME1 LINE L1 5303 5389 -777 1965 152 13 13 chr6 39650847 39651157 -142764085 + AluJb SINE Alu 1 310 -2 1506 188 57 108 chr6 39651157 39651301 -142763941 + L1ME1 LINE L1 5389 5539 -627 2033 147 0 32 chr6 39651301 39651614 -142763628 - AluJo SINE Alu -7 305 3 1506 188 57 108 chr6 39651614 39652043 -142763199 + L1ME1 LINE L1 5539 6148 -18 2354 100 0 6 chr6 39652055 39652366 -142762876 + AluSc SINE Alu 1 309 0 2256 105 0 19 chr6 39652557 39652870 -142762372 + AluSg SINE Alu 1 307 -3 361 275 42 49 chr6 39652905 39653008 -142762234 + L1ME4a LINE L1 5963 6066 -55 2440 89 0 16 chr6 39653008 39653321 -142761921 - AluSq SINE Alu -5 308 1 361 275 42 49 chr6 39653321 39653359 -142761883 + L1ME4a LINE L1 6066 6103 -18 248 0 31 0 chr6 39653523 39653555 -142761687 + (TA)n Simple_repeat Simple_repeat 1 33 0 1602 133 4 27 chr6 39653555 39653734 -142761508 - AluJb SINE Alu -3 309 136 2203 118 7 10 chr6 39653734 39653905 -142761337 - AluSx SINE Alu -8 304 133 2184 110 7 0 chr6 39653905 39654205 -142761037 - AluSg SINE Alu -8 302 1 2203 118 7 10 chr6 39654205 39654337 -142760905 - AluSx SINE Alu -179 133 2 1602 133 4 27 chr6 39654337 39654413 -142760829 - AluJb SINE Alu -176 136 60 183 114 0 0 chr6 39654424 39654459 -142760783 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1645 62 0 0 chr6 39654586 39654778 -142760464 + AluY SINE Alu 1 192 -119 352 169 0 0 chr6 39654801 39654860 -142760382 - AluS SINE Alu -244 59 1 563 188 0 83 chr6 39654973 39655117 -142760125 + FLAM_A SINE Alu 1 132 -1 2386 66 0 30 chr6 39655246 39655550 -142759692 - AluY SINE Alu -16 295 1 183 114 0 0 chr6 39655677 39655712 -142759530 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 570 15 0 0 chr6 39655714 39655781 -142759461 + (TA)n Simple_repeat Simple_repeat 1 67 0 2052 120 0 24 chr6 39655781 39656073 -142759169 - AluSx SINE Alu -27 285 1 200 118 0 0 chr6 39656276 39656310 -142758932 + MIR SINE MIR 109 142 -66 931 221 47 71 chr6 39656368 39656825 -142758417 + MLT1J LTR MaLR 1 490 -21 193 182 0 0 chr6 39656985 39657018 -142758224 - L2 LINE L2 -1037 2277 2245 2076 201 117 10 chr6 39657092 39657580 -142757662 - MLT1F LTR MaLR -2 540 1 1806 151 41 20 chr6 39657839 39658131 -142757111 + AluJb SINE Alu 1 298 -14 405 246 51 17 chr6 39658205 39658323 -142756919 + MIR SINE MIR 127 248 -14 202 292 83 14 chr6 39659525 39659597 -142755645 - L3b LINE CR1 -2 1581 1505 617 306 94 0 chr6 39659810 39660045 -142755197 - MLT1L LTR MaLR -49 566 310 645 181 159 26 chr6 39660133 39660371 -142754871 + LTR40b LTR ERVL 1 269 -250 2249 98 11 0 chr6 39660371 39660658 -142754584 + AluSx SINE Alu 1 290 -22 645 181 159 26 chr6 39660658 39660682 -142754560 + LTR40b LTR ERVL 269 288 -231 505 224 25 75 chr6 39660679 39660773 -142754469 - MLT1J LTR MaLR -358 153 56 * 240 35 0 0 chr6 39660773 39660802 -142754440 + (TATG)n Simple_repeat Simple_repeat 2 30 0 909 135 83 203 chr6 39660802 39660945 -142754297 - AluJo SINE Alu -16 286 127 2585 55 0 3 chr6 39660945 39661252 -142753990 - AluY SINE Alu -5 306 1 909 135 83 203 chr6 39661252 39661272 -142753970 - AluJo SINE Alu -175 127 106 195 42 0 0 chr6 39661272 39661296 -142753946 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2139 111 17 0 chr6 39661298 39661586 -142753656 - AluSp SINE Alu -20 293 1 909 135 83 203 chr6 39661586 39661743 -142753499 - AluJo SINE Alu -197 105 1 505 224 25 75 chr6 39661743 39661808 -142753434 - MLT1J LTR MaLR -453 58 1 471 294 146 30 chr6 39662082 39662292 -142752950 + L2 LINE L2 1983 2167 -1147 7076 120 38 35 chr6 39662292 39663564 -142751678 + MER52C LTR ERV1 4 1278 0 471 294 146 30 chr6 39663564 39663680 -142751562 + L2 LINE L2 2167 2268 -1046 1545 181 11 18 chr6 39663680 39663961 -142751281 + AluJo SINE Alu 1 279 -33 216 0 0 0 chr6 39663965 39663989 -142751253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 471 294 146 30 chr6 39663989 39664195 -142751047 + L2 LINE L2 2270 2451 -863 2350 103 0 0 chr6 39664195 39664495 -142750747 - AluSg SINE Alu -10 300 1 471 294 146 30 chr6 39664495 39664589 -142750653 + L2 LINE L2 2451 2786 -528 890 251 224 19 chr6 39664634 39665000 -142750242 + MLT1J LTR MaLR 67 507 -4 527 265 69 11 chr6 39665024 39665213 -142750029 + L2 LINE L2 2855 3054 -218 1764 166 57 7 chr6 39665392 39665688 -142749554 - AluJb SINE Alu 0 312 2 2452 85 0 3 chr6 39665894 39666201 -142749041 + AluSg SINE Alu 1 306 -4 812 272 19 27 chr6 39666204 39666461 -142748781 - L1ME1 LINE L1 -7 6159 5905 379 227 10 10 chr6 39666464 39666561 -142748681 - L1ME1 LINE L1 -1159 4987 4891 336 122 61 37 chr6 39666554 39666636 -142748606 - L1ME1 LINE L1 -2171 3975 3892 * 1534 141 8 17 chr6 39666640 39666874 -142748368 + AluJo SINE Alu 6 237 -75 4210 147 157 91 chr6 39666881 39668173 -142747069 - pTR5 LTR ERV1 0 2438 741 359 153 0 0 chr6 39668184 39668243 -142746999 + AluJo SINE Alu 241 299 -3 273 342 86 13 chr6 39668320 39668472 -142746770 + MIR SINE MIR 38 200 -62 453 191 71 64 chr6 39668495 39668636 -142746606 - L1M4 LINE L1 -2270 3876 3735 2089 145 0 7 chr6 39668637 39668941 -142746301 - AluJb SINE Alu -10 302 1 364 229 0 0 chr6 39668941 39669011 -142746231 - AluSp SINE Alu -100 203 134 180 0 0 0 chr6 39669026 39669046 -142746196 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 917 145 14 0 chr6 39669046 39669173 -142746069 - FRAM SINE Alu -163 149 18 696 167 68 12 chr6 39669173 39669335 -142745907 - L1M4 LINE L1 -2403 3743 3573 771 256 0 28 chr6 39669337 39669348 -142745894 - AluJo/FRAM SINE Alu -1 311 301 2048 102 65 14 chr6 39669348 39669641 -142745601 - AluSx SINE Alu 0 312 5 771 256 0 28 chr6 39669641 39669809 -142745433 - AluJo/FRAM SINE Alu -11 301 137 2314 111 0 13 chr6 39669814 39670120 -142745122 - AluSc SINE Alu -7 302 1 2460 234 63 20 chr6 39670121 39670196 -142745046 - L1M4 LINE L1 -2572 3574 3504 2154 117 3 13 chr6 39670196 39670495 -142744747 - AluSq SINE Alu -17 296 1 2460 234 63 20 chr6 39670495 39670811 -142744431 - L1M4 LINE L1 -2642 3504 3203 2258 99 7 7 chr6 39670811 39671103 -142744139 - AluSx SINE Alu -20 292 1 2460 234 63 20 chr6 39671103 39671539 -142743703 - L1M4 LINE L1 -2943 3203 2711 962 183 48 39 chr6 39671524 39671754 -142743488 - L1 LINE L1 -2419 3727 3496 * 786 216 12 75 chr6 39671749 39671897 -142743345 - L1 LINE L1 -3381 2765 2638 * 2115 92 65 0 chr6 39671897 39672189 -142743053 - AluSp SINE Alu -1 312 2 786 216 12 75 chr6 39672189 39672294 -142742948 - L1 LINE L1 -3508 2638 2528 273 209 30 0 chr6 39672304 39672371 -142742871 + L1MA7 LINE L1 5898 5966 -325 1619 68 0 5 chr6 39672375 39672567 -142742675 + AluY SINE Alu 1 191 -120 466 90 0 0 chr6 39672567 39672634 -142742608 + AluY SINE Alu 233 299 -10 499 171 8 14 chr6 39672634 39672853 -142742389 + L1MA7 LINE L1 5964 6287 -4 1490 192 34 44 chr6 39672888 39673185 -142742057 + AluJb SINE Alu 1 294 -18 246 274 128 10 chr6 39673186 39673288 -142741954 - L1ME LINE L1 -455 5707 5594 462 262 25 0 chr6 39673754 39673876 -142741366 - L1ME LINE L1 -564 5600 5476 827 300 22 0 chr6 39673882 39674152 -142741090 - L1 LINE L1 -3628 2518 2243 984 66 0 0 chr6 39674155 39674276 -142740966 - AluY SINE Alu -8 303 183 1972 50 0 0 chr6 39674277 39674498 -142740744 - AluY SINE Alu -90 221 1 2339 102 3 0 chr6 39674538 39674842 -142740400 - AluSx SINE Alu -7 305 1 27 0 0 0 chr6 39674945 39674972 -142740270 + AT_rich Low_complexity Low_complexity 1 27 0 2192 125 0 7 chr6 39674979 39675282 -142739960 + AluSg SINE Alu 1 301 -9 2717 134 41 8 chr6 39675282 39675768 -142739474 - L1MB3 LINE L1 -41 6378 5877 1217 97 6 11 chr6 39675769 39675945 -142739297 + THE1A LTR MaLR 2 176 -179 4673 87 5 15 chr6 39675945 39676522 -142738720 + THE1A-int LTR MaLR 932 1503 -77 2397 80 0 25 chr6 39676522 39676836 -142738406 + AluY SINE Alu 1 306 -5 4673 87 5 15 chr6 39676836 39676914 -142738328 + THE1A-int LTR MaLR 1503 1580 0 2638 74 6 0 chr6 39676914 39677267 -142737975 + THE1A LTR MaLR 1 355 0 1372 130 32 112 chr6 39677267 39677309 -142737933 - L1MB3 LINE L1 -538 5881 5837 838 168 0 0 chr6 39677309 39677440 -142737802 - FLAM_A SINE Alu -2 131 1 1372 130 32 112 chr6 39677440 39677652 -142737590 - L1MB3 LINE L1 -582 5837 5610 789 159 0 36 chr6 39677652 39677790 -142737452 - FLAM_C SINE Alu 0 133 1 1372 130 32 112 chr6 39677790 39677940 -142737302 - L1MB3 LINE L1 -809 5610 2414 2239 128 0 0 chr6 39677969 39678265 -142736977 + AluSx SINE Alu 1 296 -16 297 0 0 0 chr6 39678265 39678278 -142736964 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr6 39678278 39678311 -142736931 + (CA)n Simple_repeat Simple_repeat 2 34 0 311 304 36 18 chr6 39678386 39678498 -142736744 + L1MCa LINE L1 2018 2131 -4295 184 45 119 0 chr6 39678499 39678566 -142736676 + (TA)n Simple_repeat Simple_repeat 2 76 0 1572 61 0 0 chr6 39678566 39678767 -142736475 + AluY SINE Alu 102 302 0 380 200 12 0 chr6 39678770 39678855 -142736387 - L1MEc LINE L1 -4049 2558 2473 1523 202 3 23 chr6 39678866 39679168 -142736074 - AluJo SINE Alu -16 296 1 2578 61 0 0 chr6 39679173 39679483 -142735759 - AluY SINE Alu -1 310 1 2605 74 0 0 chr6 39679483 39679793 -142735449 - AluSg SINE Alu 0 310 1 2274 89 7 7 chr6 39679797 39680099 -142735143 - AluY SINE Alu -9 302 1 736 213 69 63 chr6 39680100 39680156 -142735086 - L1MEc LINE L1 -4128 2479 2425 2355 88 0 0 chr6 39680156 39680451 -142734791 - AluY SINE Alu -16 295 1 216 0 0 0 chr6 39680455 39680479 -142734763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2230 99 7 0 chr6 39680483 39680775 -142734467 - AluSx SINE Alu -18 294 1 736 213 69 63 chr6 39680775 39681055 -142734187 - L1MEc LINE L1 -4186 2421 2131 375 143 12 71 chr6 39681055 39681083 -142734159 - L1M4 LINE L1 -3371 2775 2747 2303 108 3 0 chr6 39681083 39681388 -142733854 - AluSq SINE Alu -7 306 1 375 143 12 71 chr6 39681388 39681443 -142733799 - L1M4 LINE L1 -3399 2747 2697 2086 123 31 3 chr6 39681497 39681789 -142733453 - AluSx SINE Alu -12 300 1 731 172 0 15 chr6 39681831 39681958 -142733284 + FLAM_A SINE Alu 1 127 -175 2433 94 10 0 chr6 39681958 39682267 -142732975 + AluSq SINE Alu 1 312 -1 583 272 59 38 chr6 39682331 39682444 -142732798 - L1M1 LINE L1 -1926 4500 4391 5987 67 19 4 chr6 39682444 39682800 -142732442 - L1PB1 LINE L1 -1 6150 5801 486 0 0 0 chr6 39682800 39682854 -142732388 + (TA)n Simple_repeat Simple_repeat 1 54 0 5987 67 19 4 chr6 39682854 39682984 -142732258 - L1PB1 LINE L1 -350 5801 5674 2148 105 0 53 chr6 39682984 39683307 -142731935 - AluSx SINE Alu -6 306 1 5987 67 19 4 chr6 39683307 39683510 -142731732 - L1PB1 LINE L1 -477 5674 5475 2360 108 0 13 chr6 39683510 39683824 -142731418 - AluY SINE Alu -1 310 1 5987 67 19 4 chr6 39683824 39684454 -142730788 - L1PB1 LINE L1 -676 5475 4854 583 272 59 38 chr6 39684454 39684672 -142730570 - L1M1 LINE L1 -2035 4391 1758 1088 106 0 0 chr6 39684711 39684852 -142730390 - AluJb SINE Alu -171 141 1 3938 115 19 3 chr6 39684953 39685537 -142729705 - HUERS-P3 LTR ERV1 -2920 5999 5407 26 64 0 0 chr6 39686266 39686313 -142728929 + GC_rich Low_complexity Low_complexity 1 47 0 211 176 39 20 chr6 39686451 39686502 -142728740 + MIR SINE MIR 68 119 -89 745 161 0 29 chr6 39687291 39687428 -142727814 - FLAM_C SINE Alu 0 133 1 543 255 159 36 chr6 39689238 39689489 -142725753 - MER5C DNA MER1_type -42 282 1 327 252 203 0 chr6 39690315 39690438 -142724804 - MIR SINE MIR -60 202 55 249 250 58 58 chr6 39691802 39691906 -142723336 - MIR3 SINE MIR -11 197 94 247 256 12 23 chr6 39692974 39693060 -142722182 + C-rich Low_complexity Low_complexity 6 90 0 222 289 7 37 chr6 39697172 39697307 -142717935 + (CGGGG)n Simple_repeat Simple_repeat 4 134 0 2174 110 0 3 chr6 39697628 39697920 -142717322 - AluSx SINE Alu -21 291 1 545 208 167 0 chr6 39698392 39698536 -142716706 + L1MEc LINE L1 859 1026 -5581 2289 104 7 0 chr6 39698546 39698843 -142716399 + AluSq SINE Alu 1 299 -14 271 128 0 0 chr6 39698850 39698889 -142716353 + Alu SINE Alu 1 39 -264 987 240 39 87 chr6 39698889 39699245 -142715997 + L1MEc LINE L1 1048 1419 -5007 2335 107 3 3 chr6 39699245 39699555 -142715687 + AluSp SINE Alu 1 310 -3 987 240 39 87 chr6 39699555 39699765 -142715477 + L1MEc LINE L1 1419 1579 -4847 2281 81 0 3 chr6 39699765 39700092 -142715150 - AluY SINE Alu 0 326 1 987 240 39 87 chr6 39700092 39700120 -142715122 + L1MEc LINE L1 1579 1607 -4819 2402 75 7 13 chr6 39700248 39700556 -142714686 - AluY SINE Alu -1 310 5 2080 115 24 24 chr6 39700767 39701063 -142714179 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 39701122 39701226 -142714016 - Charlie5 DNA MER1_type -10 2602 2496 874 200 7 7 chr6 39701230 39701380 -142713862 + FRAM SINE Alu 1 142 -34 2235 112 3 6 chr6 39701407 39701720 -142713522 + AluSx SINE Alu 1 312 0 339 148 164 23 chr6 39701728 39701822 -142713420 - Charlie5 DNA MER1_type -116 2469 2351 1653 163 83 0 chr6 39701822 39701959 -142713283 + AluJb SINE Alu 1 125 -187 2401 87 0 22 chr6 39701959 39702271 -142712971 + AluSp SINE Alu 1 305 -8 1653 163 83 0 chr6 39702271 39702409 -142712833 + AluJb SINE Alu 125 299 -13 339 148 164 23 chr6 39702409 39702442 -142712800 - Charlie5 DNA MER1_type -234 2351 2324 362 294 141 12 chr6 39703198 39703361 -142711881 + MIR SINE MIR 28 211 -51 519 160 32 0 chr6 39704342 39704436 -142710806 + FLAM_A SINE Alu 34 130 -12 2239 118 16 0 chr6 39704456 39704762 -142710480 - AluSx SINE Alu -1 311 1 1663 163 0 45 chr6 39705302 39705591 -142709651 + AluJb SINE Alu 1 276 -36 702 152 64 0 chr6 39705615 39705740 -142709502 + FLAM_A SINE Alu 1 133 0 1570 124 153 18 chr6 39707236 39707510 -142707732 + AluYb8 SINE Alu 1 311 -7 2201 104 0 10 chr6 39707520 39707845 -142707397 + AluSg SINE Alu 1 322 0 2333 198 37 0 chr6 39707998 39708484 -142706758 - L1ME1 LINE L1 -218 5948 5445 1456 143 58 0 chr6 39708554 39708812 -142706430 + L1MA6 LINE L1 6006 6278 -22 2363 93 3 3 chr6 39709657 39709958 -142705284 + AluSp SINE Alu 1 301 -12 444 200 154 0 chr6 39710016 39710126 -142705116 - FLAM_A SINE Alu -8 134 8 1354 170 117 36 chr6 39710192 39710228 -142705014 - L1ME1 LINE L1 -5 6161 6129 1881 162 7 17 chr6 39710228 39710524 -142704718 - AluJb SINE Alu -19 293 1 1354 170 117 36 chr6 39710524 39710846 -142704396 - L1ME1 LINE L1 -37 6129 5774 228 35 0 0 chr6 39710848 39710877 -142704365 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2009 100 0 0 chr6 39710894 39711144 -142704098 - AluSq SINE Alu -63 250 1 2144 117 20 0 chr6 39711157 39711455 -142703787 - AluSx SINE Alu -8 304 1 903 226 16 5 chr6 39711562 39711752 -142703490 + MER90 LTR ERV1 1 192 -422 485 125 0 0 chr6 39711760 39711832 -142703410 + AluS SINE Alu 2 73 -240 854 230 55 0 chr6 39711832 39712032 -142703210 + MER90 LTR ERV1 402 612 -2 2257 119 7 0 chr6 39712068 39712370 -142702872 - AluSx SINE Alu -8 304 1 2360 118 0 6 chr6 39712477 39712791 -142702451 + AluSx SINE Alu 1 312 0 254 206 48 0 chr6 39712818 39712881 -142702361 - L1ME1 LINE L1 -450 5714 5649 398 103 0 0 chr6 39712881 39712939 -142702303 - MLT1D LTR MaLR 0 505 448 2035 137 10 7 chr6 39712940 39713233 -142702009 - AluJb SINE Alu -18 294 1 1056 136 0 0 chr6 39713284 39713431 -142701811 - FRAM SINE Alu -23 153 7 2560 67 0 0 chr6 39713440 39713740 -142701502 - AluSq SINE Alu -13 300 1 1838 200 24 86 chr6 39713742 39713850 -142701392 - L1ME1 LINE L1 -846 5300 5187 2194 141 0 0 chr6 39713850 39714155 -142701087 - AluSx SINE Alu -7 305 1 1838 200 24 86 chr6 39714155 39714225 -142701017 - L1ME1 LINE L1 -959 5187 5114 2098 129 24 0 chr6 39714225 39714519 -142700723 - AluJb SINE Alu -11 301 1 1838 200 24 86 chr6 39714519 39714534 -142700708 - L1ME1 LINE L1 -1032 5114 5100 2274 88 10 14 chr6 39714534 39714830 -142700412 - AluSq SINE Alu -18 295 1 1838 200 24 86 chr6 39714830 39714939 -142700303 - L1ME1 LINE L1 -1046 5100 4986 3412 147 29 8 chr6 39714939 39715298 -142699944 - LTR26 LTR ERV1 0 603 226 2238 109 3 22 chr6 39715298 39715610 -142699632 - AluSx SINE Alu -6 306 1 3412 147 29 8 chr6 39715610 39715841 -142699401 - LTR26 LTR ERV1 -377 226 1 1838 200 24 86 chr6 39715841 39716136 -142699106 - L1ME1 LINE L1 -1160 4986 4742 2057 143 0 10 chr6 39716136 39716437 -142698805 - AluJo SINE Alu -14 298 1 1838 200 24 86 chr6 39716437 39716501 -142698741 - L1ME1 LINE L1 -1404 4742 4676 459 35 0 0 chr6 39716507 39716564 -142698678 + (TG)n Simple_repeat Simple_repeat 2 58 0 1775 122 42 35 chr6 39716564 39716843 -142698399 - AluJo SINE Alu -24 288 5 39 0 0 0 chr6 39716852 39716891 -142698351 + AT_rich Low_complexity Low_complexity 1 39 0 939 191 77 26 chr6 39716894 39717034 -142698208 - AluJo SINE Alu -24 288 157 2196 107 0 30 chr6 39717034 39717334 -142697908 - AluSx SINE Alu -21 291 1 1240 180 136 37 chr6 39717338 39717471 -142697771 - AluJo SINE Alu -13 299 181 2001 141 14 0 chr6 39717471 39717768 -142697474 - AluJb SINE Alu -11 301 1 1240 180 136 37 chr6 39717768 39717906 -142697336 - AluJo SINE Alu -131 181 1 939 191 77 26 chr6 39717906 39717954 -142697288 - AluJo SINE Alu -157 155 85 826 225 0 24 chr6 39717981 39718150 -142697092 - AluJb SINE Alu -51 261 97 1123 230 47 12 chr6 39718161 39718500 -142696742 - L1M4 LINE L1 -1045 5101 4755 1101 118 13 0 chr6 39718501 39718653 -142696589 - AluSg/x SINE Alu -17 295 142 955 265 12 29 chr6 39718655 39718814 -142696428 - L1M4 LINE L1 -1384 4762 4602 2171 119 10 0 chr6 39718814 39719108 -142696134 - AluSq SINE Alu -16 297 1 955 265 12 29 chr6 39719108 39719291 -142695951 - L1M4 LINE L1 -1544 4602 4426 2146 73 3 28 chr6 39719291 39719578 -142695664 - AluY SINE Alu -2 309 30 1934 108 12 4 chr6 39719588 39719846 -142695396 - AluSq SINE Alu -20 293 34 2022 90 112 0 chr6 39719847 39720125 -142695117 - AluSq SINE Alu -4 309 1 286 139 0 0 chr6 39720270 39720313 -142694929 - L1ME LINE L1 -607 5559 5517 2122 101 7 0 chr6 39720313 39720633 -142694609 + AluSx SINE Alu 5 326 0 2252 75 0 34 chr6 39720633 39720976 -142694266 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 39720999 39721075 -142694167 + (TC)n Simple_repeat Simple_repeat 1 76 0 1911 164 3 0 chr6 39721076 39721368 -142693874 - AluJb SINE Alu -19 293 1 714 185 51 10 chr6 39721376 39721571 -142693671 - L1ME LINE L1 -811 5335 5133 2262 100 0 0 chr6 39721590 39721869 -142693373 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 39721879 39722017 -142693225 - AluJo/FRAM SINE Alu -1 311 175 389 81 16 0 chr6 39722017 39722079 -142693163 + AluSp/q SINE Alu 241 303 0 866 192 14 112 chr6 39722080 39722261 -142692981 - L1ME LINE L1 -1211 4935 4791 2257 117 10 0 chr6 39722261 39722569 -142692673 - AluSp SINE Alu -2 311 1 866 192 14 112 chr6 39722569 39722674 -142692568 - L1ME LINE L1 -1355 4791 4677 734 223 91 65 chr6 39722713 39722880 -142692362 + L1MD3 LINE L1 7657 7818 -177 1702 179 7 23 chr6 39722880 39723181 -142692061 + AluJb SINE Alu 1 296 -16 1857 186 0 0 chr6 39723187 39723483 -142691759 + AluJb SINE Alu 1 296 -16 2160 125 0 0 chr6 39723487 39723788 -142691454 + AluSg SINE Alu 1 301 0 734 223 91 65 chr6 39723788 39723916 -142691326 + L1MD3 LINE L1 7824 7973 -22 1869 123 56 0 chr6 39723916 39724211 -142691031 + AluSx SINE Alu 1 310 0 652 132 0 26 chr6 39724251 39724365 -142690877 + AluJo/FLAM SINE Alu 18 128 -184 2715 3 0 0 chr6 39724367 39724687 -142690555 + AluY SINE Alu 1 320 0 1757 235 21 45 chr6 39724687 39725192 -142690050 - MLT1E LTR MaLR -60 533 42 1769 231 154 38 chr6 39725271 39725547 -142689695 - L1MC5 LINE L1 -523 7438 7195 2066 112 0 85 chr6 39725547 39725913 -142689329 - AluSx SINE Alu 0 312 1 1769 231 154 38 chr6 39725913 39726272 -142688970 - L1MC5 LINE L1 -766 7195 6704 700 211 72 0 chr6 39726272 39726424 -142688818 - FRAM SINE Alu -3 163 1 1769 231 154 38 chr6 39726424 39726520 -142688722 - L1MC5 LINE L1 -1257 6704 6621 1974 118 38 14 chr6 39726520 39726808 -142688434 + AluSx SINE Alu 1 295 -17 446 278 105 33 chr6 39727423 39727635 -142687607 - MLT1H LTR MaLR -273 276 51 2849 13 0 0 chr6 39728135 39728436 -142686806 - AluYa5 SINE Alu -10 301 1 373 236 57 57 chr6 39729073 39729230 -142686012 + MER5A DNA MER1_type 4 160 -29 698 167 0 8 chr6 39729327 39729453 -142685789 + FLAM_C SINE Alu 11 135 -8 2226 106 3 0 chr6 39729455 39729774 -142685468 + AluSp SINE Alu 1 320 0 2249 117 3 0 chr6 39729777 39730077 -142685165 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 39730077 39730117 -142685125 + AT_rich Low_complexity Low_complexity 1 40 0 403 224 37 28 chr6 39730120 39730227 -142685015 + MIR SINE MIR 97 204 -58 346 242 24 65 chr6 39730799 39730923 -142684319 - MIR SINE MIR -110 152 34 563 285 44 0 chr6 39730964 39731101 -142684141 + MIR SINE MIR 46 188 -74 1897 191 77 29 chr6 39731112 39731594 -142683648 - MLT1D LTR MaLR 0 505 1 331 267 55 0 chr6 39731638 39731738 -142683504 + MIR SINE MIR 54 155 -61 2184 123 3 0 chr6 39732076 39732386 -142682856 - AluY SINE Alu 0 311 1 1770 170 3 22 chr6 39732411 39732722 -142682520 + AluJb SINE Alu 1 305 -7 1743 172 3 7 chr6 39732756 39733041 -142682201 + AluJb SINE Alu 10 293 -19 968 184 38 0 chr6 39733041 39733248 -142681994 - L1MB5 LINE L1 -50 6124 5902 1714 166 7 11 chr6 39733624 39733930 -142681312 - AluSx SINE Alu 0 305 1 841 229 52 52 chr6 39733967 39734238 -142681004 + L2 LINE L2 3041 3311 -2 2441 87 0 3 chr6 39734797 39735095 -142680147 + AluSc SINE Alu 1 297 -12 736 179 0 0 chr6 39735095 39735212 -142680030 - FLAM_A SINE Alu -15 118 2 569 217 182 34 chr6 39735243 39735628 -142679614 - MLT1H LTR MaLR -7 588 93 2345 110 0 0 chr6 39735628 39735929 -142679313 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 39735938 39735959 -142679283 + AT_rich Low_complexity Low_complexity 1 21 0 2086 119 0 23 chr6 39735970 39736273 -142678969 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 39736304 39736435 -142678807 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 39736684 39736977 -142678265 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 39736977 39738214 -142677028 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 39738214 39738593 -142676649 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 39738698 39738786 -142676456 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 39739113 39739419 -142675823 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 39739649 39739695 -142675547 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 39739769 39739922 -142675320 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 39739957 39740253 -142674989 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 39740744 39740887 -142674355 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 39741304 39741605 -142673637 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 39741706 39741746 -142673496 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 39741873 39741919 -142673323 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 39742450 39742755 -142672487 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 39742835 39742935 -142672307 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 39742940 39742972 -142672270 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 39743023 39743134 -142672108 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 39743112 39743181 -142672061 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 39743475 39743560 -142671682 + L2 LINE L2 3005 3085 -187 24 0 0 0 chr6 39743973 39743997 -142671245 + AT_rich Low_complexity Low_complexity 1 24 0 2488 59 10 0 chr6 39743997 39744304 -142670938 - AluY SINE Alu -1 310 1 2427 57 4 0 chr6 39744519 39744800 -142670442 + AluSp SINE Alu 1 282 -31 703 24 0 0 chr6 39744717 39744800 -142670442 + AluSp/q SINE Alu 200 324 0 224 48 24 24 chr6 39744800 39744842 -142670400 + (CAAAA)n Simple_repeat Simple_repeat 1 100 0 346 278 63 16 chr6 39744858 39744984 -142670258 + L2 LINE L2 3168 3299 -14 221 300 167 42 chr6 39746788 39747051 -142668191 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 39747179 39747483 -142667759 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 39748038 39748067 -142667175 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 39748148 39748497 -142666745 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 39749119 39749390 -142665852 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 39749801 39750104 -142665138 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 39750145 39750342 -142664900 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 39750387 39750559 -142664683 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 39750559 39750873 -142664369 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 39750873 39750902 -142664340 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 39751679 39751926 -142663316 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 39752514 39752709 -142662533 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 39753228 39753334 -142661908 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 39753349 39753462 -142661780 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 39753463 39753850 -142661392 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 39753851 39754133 -142661109 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 39754133 39754437 -142660805 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 39754437 39754817 -142660425 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 39754925 39754951 -142660291 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 39754994 39755069 -142660173 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 39755103 39755374 -142659868 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 39755407 39755563 -142659679 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 39755641 39755753 -142659489 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 39755826 39755875 -142659367 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 39755895 39756011 -142659231 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 39756834 39757046 -142658196 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 39757240 39757363 -142657879 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 39757363 39757678 -142657564 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 39757680 39757984 -142657258 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 39757986 39758296 -142656946 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 39758296 39758389 -142656853 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 39758408 39758825 -142656417 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 39759064 39759379 -142655863 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 39759439 39759750 -142655492 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 39759767 39759842 -142655400 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 39759842 39760151 -142655091 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 39760151 39760269 -142654973 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 39760320 39760536 -142654706 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 39760561 39760680 -142654562 - L1MC5 LINE L1 -997 6964 6839 1930 136 7 17 chr6 39760680 39760974 -142654268 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 39760974 39761025 -142654217 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 39761025 39761319 -142653923 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 39761319 39761401 -142653841 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 39761415 39761698 -142653544 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 39761698 39762010 -142653232 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 39762010 39762297 -142652945 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 39762297 39762611 -142652631 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 39762626 39762930 -142652312 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 39762993 39763113 -142652129 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 39763260 39763573 -142651669 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 39763678 39763792 -142651450 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 39763798 39764417 -142650825 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 39764417 39764718 -142650524 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 39764812 39764850 -142650392 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 39764850 39764910 -142650332 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 39764910 39765739 -142649503 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 39765951 39766065 -142649177 - MIR SINE MIR -73 189 52 196 211 19 0 chr6 39766155 39766207 -142649035 - MIR SINE MIR -77 131 79 182 182 0 0 chr6 39766439 39766472 -142648770 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 39766509 39766797 -142648445 + AluJb SINE Alu 1 284 -28 727 276 104 0 chr6 39766848 39767098 -142648144 - L1ME3 LINE L1 -86 6076 5801 1119 256 91 22 chr6 39767102 39767465 -142647777 - LTR16A LTR ERVL -4 446 59 286 298 24 56 chr6 39767713 39767921 -142647321 - MERVL LTR ERVL -228 5257 5059 389 355 27 11 chr6 39768170 39768356 -142646886 - MERVL LTR ERVL -926 4838 4650 697 92 0 0 chr6 39768385 39768483 -142646759 - AluJ/FLAM SINE Alu -213 99 2 1076 129 84 44 chr6 39768486 39768523 -142646719 - L1MA8 LINE L1 0 6291 6257 2143 123 0 10 chr6 39768523 39768823 -142646419 + AluJb SINE Alu 1 297 -15 1076 129 84 44 chr6 39768823 39769010 -142646232 - L1MA8 LINE L1 -34 6257 6058 2186 285 90 21 chr6 39769149 39769705 -142645537 - HERV16 LTR ERVL -2763 2233 1717 1546 157 3 70 chr6 39769705 39769991 -142645251 - AluJo SINE Alu -45 267 1 2186 285 90 21 chr6 39769991 39770526 -142644716 - HERV16 LTR ERVL -3279 1717 1044 429 298 64 57 chr6 39770654 39771043 -142644199 - HERV16 LTR ERVL -4450 546 155 1586 124 75 26 chr6 39771198 39771230 -142644012 - L1P4 LINE L1 -355 5811 5782 2533 88 0 0 chr6 39771230 39771536 -142643706 - AluSq SINE Alu -7 306 1 1586 124 75 26 chr6 39771536 39771809 -142643433 - L1P4 LINE L1 -384 5782 5491 1130 137 0 58 chr6 39771810 39772000 -142643242 - AluSg/x SINE Alu 0 310 132 2457 88 7 0 chr6 39772000 39772306 -142642936 - AluSp SINE Alu -5 308 1 1023 191 40 1 chr6 39772306 39772570 -142642672 + L1PA16 LINE L1 5858 6161 0 549 263 184 34 chr6 39772587 39772862 -142642380 - LTR16A LTR ERVL -96 357 54 1049 267 52 6 chr6 39772907 39773233 -142642009 - L1ME LINE L1 -366 5796 5456 275 267 125 51 chr6 39773571 39773747 -142641495 - MIR SINE MIR -47 215 27 516 203 0 77 chr6 39773992 39774063 -142641179 - MER5A DNA MER1_type -53 136 80 1794 171 24 3 chr6 39774063 39774361 -142640881 - AluJo SINE Alu -8 304 1 516 203 0 77 chr6 39774361 39774432 -142640810 - MER5A DNA MER1_type -109 80 5 199 293 69 86 chr6 39775019 39775078 -142640164 + MER5A DNA MER1_type 75 133 -56 2445 90 0 0 chr6 39775078 39775377 -142639865 - AluSx SINE Alu -13 299 1 199 293 69 86 chr6 39775377 39775433 -142639809 + MER5A DNA MER1_type 133 188 -1 221 218 89 69 chr6 39776282 39776383 -142638859 + MIR3 SINE MIR 106 208 0 361 268 58 29 chr6 39776418 39776556 -142638686 + MIR SINE MIR 24 165 -97 2148 101 7 20 chr6 39776566 39776872 -142638370 - AluSx SINE Alu -10 302 1 559 230 22 7 chr6 39776921 39777056 -142638186 - MIR SINE MIR 0 262 126 335 205 60 0 chr6 39777558 39777641 -142637601 - MER5B DNA MER1_type 0 178 91 2282 93 0 0 chr6 39777657 39777984 -142637258 - AluSc SINE Alu 0 327 1 606 215 0 7 chr6 39777984 39778119 -142637123 - L1ME LINE L1 -814 5332 5199 1997 159 7 3 chr6 39778140 39778442 -142636800 + AluJb SINE Alu 1 303 -9 1995 154 44 29 chr6 39778458 39778509 -142636733 + L1M4 LINE L1 4924 4973 -1207 2972 126 41 54 chr6 39778509 39779043 -142636199 - MER1A DNA MER1_type 0 527 1 1995 154 44 29 chr6 39779043 39779136 -142636106 + L1M4 LINE L1 4973 5063 -1117 2271 117 0 7 chr6 39779136 39779445 -142635797 + AluSx SINE Alu 1 307 -5 1995 154 44 29 chr6 39779445 39779880 -142635362 + L1M4 LINE L1 5063 5501 -679 278 167 42 0 chr6 39779880 39779928 -142635314 + MER57A LTR ERV1 295 344 -59 444 179 12 3 chr6 39779937 39780034 -142635208 + L1M4 LINE L1 5478 5573 -595 5117 93 17 14 chr6 39780034 39780799 -142634443 - Tigger1 DNA MER2_type -1086 1332 566 335 163 0 8 chr6 39780814 39780878 -142634364 - Alu SINE Alu -250 53 1 283 237 69 69 chr6 39780977 39781108 -142634134 - MIR3 SINE MIR -30 178 48 229 238 79 0 chr6 39781293 39781356 -142633886 + MER5A DNA MER1_type 6 73 -116 2253 107 3 10 chr6 39781374 39781682 -142633560 + AluSg SINE Alu 1 306 -4 516 280 117 57 chr6 39781896 39782085 -142633157 + MLT1H1 LTR MaLR 184 360 -195 2536 66 0 3 chr6 39782085 39782390 -142632852 - AluY SINE Alu -7 304 1 516 280 117 57 chr6 39782390 39782550 -142632692 + MLT1H1 LTR MaLR 360 554 -1 330 260 31 10 chr6 39782551 39782647 -142632595 + MER5A DNA MER1_type 92 189 0 1354 145 0 26 chr6 39782696 39782923 -142632319 + AluJo SINE Alu 92 312 0 465 254 98 71 chr6 39783366 39783590 -142631652 - L1ME2 LINE L1 -1 6163 5932 * 2822 127 38 75 chr6 39783588 39783700 -142631542 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 39783700 39783728 -142631514 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2822 127 38 75 chr6 39783728 39783871 -142631371 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 39783871 39783896 -142631346 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 39783895 39783916 -142631326 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2822 127 38 75 chr6 39783896 39783916 -142631326 - L1MDa LINE L1 -4399 2141 2122 2198 108 3 0 chr6 39783916 39784204 -142631038 - AluSq SINE Alu -13 300 12 2822 127 38 75 chr6 39784204 39784601 -142630641 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 39784603 39784626 -142630616 + (TTA)n Simple_repeat Simple_repeat 2 24 0 933 165 78 73 chr6 39784631 39784837 -142630405 - AluJo SINE Alu -20 292 86 4709 192 140 60 chr6 39784837 39785256 -142629986 - L1MDa LINE L1 -4760 1780 1396 2040 133 7 10 chr6 39785256 39785556 -142629686 - AluSx SINE Alu -13 299 1 4709 192 140 60 chr6 39785556 39785839 -142629403 - L1MDa LINE L1 -5144 1396 1137 1851 180 10 0 chr6 39785839 39786139 -142629103 - AluJb SINE Alu -9 303 1 4709 192 140 60 chr6 39786139 39787067 -142628175 - L1MDa LINE L1 -5403 1137 18 423 214 11 0 chr6 39787068 39787157 -142628085 - L1ME2 LINE L1 -213 5949 5860 3259 134 19 28 chr6 39787167 39787722 -142627520 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 39787722 39787746 -142627496 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2201 103 0 3 chr6 39787746 39788028 -142627214 - AluSq SINE Alu -31 282 2 3259 134 19 28 chr6 39788028 39788051 -142627191 - L1MB1 LINE L1 -557 5611 5593 924 138 0 29 chr6 39788053 39788191 -142627051 - AluJo SINE Alu -178 134 1 4439 158 27 47 chr6 39788191 39789484 -142625758 - L1MB1 LINE L1 -561 5607 4354 383 206 76 0 chr6 39789547 39789639 -142625603 - L1ME2 LINE L1 -295 5875 5777 429 250 0 24 chr6 39789680 39789804 -142625438 - L1ME2 LINE L1 -364 5798 5678 800 280 53 66 chr6 39789817 39790338 -142624904 + L2 LINE L2 2606 3133 -180 2125 113 10 3 chr6 39790338 39790631 -142624611 - AluSx SINE Alu -11 301 7 800 280 53 66 chr6 39790631 39790809 -142624433 + L2 LINE L2 3133 3312 -1 191 94 31 0 chr6 39790919 39790951 -142624291 + MER5A DNA MER1_type 43 75 -114 * 345 270 0 0 chr6 39790944 39791033 -142624209 - MER5A DNA MER1_type -80 109 21 194 227 15 45 chr6 39791017 39791083 -142624159 + MIR SINE MIR 80 143 -119 * 208 179 18 89 chr6 39791115 39791171 -142624071 + L2 LINE L2 3210 3261 -11 378 129 0 0 chr6 39791657 39791719 -142623523 + (TG)n Simple_repeat Simple_repeat 2 63 0 250 315 22 11 chr6 39792481 39792573 -142622669 + MIR SINE MIR 45 137 -71 476 273 41 0 chr6 39792654 39792775 -142622467 + L2 LINE L2 3146 3271 -1 1692 256 81 12 chr6 39796640 39797522 -142617720 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 39798100 39798347 -142616895 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 39798351 39798555 -142616687 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 39799349 39799508 -142615734 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 39800105 39800304 -142614938 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 39800537 39800587 -142614655 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 39800650 39800874 -142614368 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 39801356 39801585 -142613657 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 39801596 39801774 -142613468 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 39801846 39802008 -142613234 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 39802048 39802126 -142613116 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 39802126 39802158 -142613084 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 39802158 39802206 -142613036 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 39802206 39802723 -142612519 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 39802723 39802897 -142612345 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 39802995 39803131 -142612111 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 39803554 39803677 -142611565 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 39804204 39804391 -142610851 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 39806804 39806838 -142608404 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 1853 140 8 0 chr6 39857380 39857645 -142557597 + AluSx SINE Alu 1 267 -45 345 178 14 14 chr6 39857758 39857831 -142557411 - AluJo SINE Alu -7 295 223 945 184 39 22 chr6 39857831 39858010 -142557232 - AluJo SINE Alu -128 184 3 235 288 82 0 chr6 39858079 39858152 -142557090 + MER5B DNA MER1_type 81 159 -19 1976 124 21 0 chr6 39858183 39858465 -142556777 + AluSx SINE Alu 1 288 -24 337 113 0 0 chr6 39858681 39858743 -142556499 + Alu SINE Alu 240 301 0 227 209 97 82 chr6 39860913 39861047 -142554195 - L1ME4a LINE L1 -11 6110 5975 22 0 0 0 chr6 39861074 39861096 -142554146 + AT_rich Low_complexity Low_complexity 1 22 0 2310 68 17 10 chr6 39861100 39861394 -142553848 + AluSg SINE Alu 1 296 -14 1440 158 43 50 chr6 39861398 39861676 -142553566 + AluJb SINE Alu 30 305 -7 2187 103 3 13 chr6 39861678 39861980 -142553262 + AluSx SINE Alu 1 299 -13 2359 96 0 19 chr6 39861984 39862297 -142552945 + AluSq SINE Alu 1 307 -6 2372 107 0 3 chr6 39862300 39862608 -142552634 + AluSx SINE Alu 1 307 -5 683 180 121 137 chr6 39862611 39862755 -142552487 + AluJo SINE Alu 2 147 -155 2494 53 0 10 chr6 39862755 39863056 -142552186 + AluY SINE Alu 1 298 -13 2416 81 0 0 chr6 39863056 39863352 -142551890 + AluY SINE Alu 1 296 -15 683 180 121 137 chr6 39863352 39863512 -142551730 + AluJo SINE Alu 145 302 0 2393 75 7 13 chr6 39863842 39864150 -142551092 - AluY SINE Alu -1 310 5 2070 115 24 24 chr6 39864361 39864657 -142550585 + AluSx SINE Alu 1 296 -16 331 211 58 29 chr6 39864716 39864820 -142550422 - Charlie5 DNA MER1_type -10 2602 2496 872 200 7 7 chr6 39864824 39864974 -142550268 + FRAM SINE Alu 1 142 -34 2228 112 3 6 chr6 39865001 39865314 -142549928 + AluSx SINE Alu 1 312 0 348 148 164 23 chr6 39865322 39865416 -142549826 - Charlie5 DNA MER1_type -116 2469 2351 1646 163 83 0 chr6 39865416 39865553 -142549689 + AluJb SINE Alu 1 125 -187 2390 87 0 22 chr6 39865553 39865865 -142549377 + AluSp SINE Alu 1 305 -8 1646 163 83 0 chr6 39865865 39866003 -142549239 + AluJb SINE Alu 125 299 -13 348 148 164 23 chr6 39866003 39866036 -142549206 - Charlie5 DNA MER1_type -234 2351 2324 400 288 141 12 chr6 39866792 39866955 -142548287 + MIR SINE MIR 28 211 -51 201 247 169 0 chr6 39867115 39867192 -142548050 - MIR SINE MIR -61 147 58 561 129 35 0 chr6 39868260 39868345 -142546897 + FLAM_A SINE Alu 34 121 -21 2224 118 16 0 chr6 39868374 39868680 -142546562 - AluSx SINE Alu -1 311 1 1655 163 0 45 chr6 39869220 39869509 -142545733 + AluJb SINE Alu 1 276 -36 753 152 64 0 chr6 39869533 39869658 -142545584 + FLAM_A SINE Alu 1 133 0 830 188 0 6 chr6 39870662 39870822 -142544420 - AluJb SINE Alu -20 292 134 302 264 104 7 chr6 39870822 39870966 -142544276 + L1MEd LINE L1 1056 1213 -4906 1933 130 9 16 chr6 39870967 39871315 -142543927 - MER4A LTR ERV1 0 664 261 2172 138 0 0 chr6 39871317 39871615 -142543627 - AluSx SINE Alu -14 298 1 348 298 57 0 chr6 39871718 39871842 -142543400 + L2 LINE L2 2654 2784 -530 1504 147 108 39 chr6 39871842 39872121 -142543121 - AluSx SINE Alu -12 300 3 256 313 145 33 chr6 39872278 39872492 -142542750 - L2 LINE L2 -954 2360 2123 218 324 81 9 chr6 39872527 39872638 -142542604 + L2 LINE L2 3139 3257 -15 3816 105 0 4 chr6 39872689 39873202 -142542040 - MER9 LTR ERVK 0 511 1 310 288 181 10 chr6 39873453 39873715 -142541527 - L2 LINE L2 -236 3036 2691 1989 142 0 22 chr6 39873715 39874026 -142541216 - AluSq SINE Alu -9 304 1 1814 158 9 53 chr6 39874026 39874348 -142540894 - AluJb SINE Alu -4 308 1 216 0 0 0 chr6 39874923 39874947 -142540295 + (CA)n Simple_repeat Simple_repeat 2 25 0 1926 93 19 30 chr6 39875368 39875637 -142539605 - AluSq SINE Alu -47 266 1 308 24 24 0 chr6 39875640 39875681 -142539561 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1990 120 3 7 chr6 39875685 39875968 -142539274 - AluSx SINE Alu -30 282 1 2291 104 3 10 chr6 39876050 39876357 -142538885 - AluSp SINE Alu -8 305 1 2032 137 10 7 chr6 39876380 39876679 -142538563 - AluSx SINE Alu -8 304 5 350 271 101 47 chr6 39876682 39876811 -142538431 - L1ME3A LINE L1 -60 6110 5975 2096 210 52 34 chr6 39876929 39877247 -142537995 - L1ME1 LINE L1 -5 6161 5825 2339 110 0 0 chr6 39877247 39877556 -142537686 - AluSx SINE Alu -3 309 1 2096 210 52 34 chr6 39877556 39877832 -142537410 - L1ME1 LINE L1 -341 5825 5556 671 165 52 113 chr6 39877835 39878083 -142537159 - MER21A LTR ERV1 -3 928 696 2332 161 108 91 chr6 39878083 39878668 -142536574 - LTR12 LTR ERV1 -2 712 118 1418 188 72 60 chr6 39878671 39879117 -142536125 - pTR5 LTR ERV1 -1245 1193 743 855 126 28 28 chr6 39879117 39879260 -142535982 - MER21A LTR ERV1 -230 701 559 2766 157 47 72 chr6 39879261 39879804 -142535438 + MER4D LTR ERV1 1 525 -378 2192 121 0 0 chr6 39879804 39880102 -142535140 + AluSx SINE Alu 1 298 -14 2766 157 47 72 chr6 39880102 39880225 -142535017 + MER4D LTR ERV1 525 650 -253 2419 144 9 118 chr6 39880226 39880767 -142534475 + LTR12 LTR ERV1 1 482 -232 743 216 82 35 chr6 39880767 39880998 -142534244 + MER4D LTR ERV1 651 892 -11 231 269 0 0 chr6 39881041 39881093 -142534149 + LTR30 LTR ERV1 1 52 -670 1363 105 39 53 chr6 39881093 39881366 -142533876 + LTR12 LTR ERV1 57 2013 -425 23 0 0 0 chr6 39881401 39881424 -142533818 + GC_rich Low_complexity Low_complexity 1 23 0 242 208 31 83 chr6 39881430 39881526 -142533716 + LTR30 LTR ERV1 552 642 -80 659 131 0 0 chr6 39881529 39881628 -142533614 + LTR12 LTR ERV1 615 713 -1 1063 134 5 123 chr6 39881628 39881974 -142533268 - MER21A LTR ERV1 -431 432 126 2366 81 3 0 chr6 39881974 39882259 -142532983 - AluSg SINE Alu -24 286 1 1063 134 5 123 chr6 39882259 39882372 -142532870 - MER21A LTR ERV1 -737 126 1 284 139 0 0 chr6 39882372 39882415 -142532827 - L1ME1 LINE L1 -607 5559 5517 2111 101 7 0 chr6 39882415 39882731 -142532511 + AluSx SINE Alu 5 322 0 2235 75 0 34 chr6 39882731 39883074 -142532168 + AluY SINE Alu 1 333 0 474 132 0 0 chr6 39883097 39883173 -142532069 + (TC)n Simple_repeat Simple_repeat 1 76 0 1901 164 3 0 chr6 39883174 39883466 -142531776 - AluJb SINE Alu -19 293 1 718 185 51 10 chr6 39883474 39883669 -142531573 - L1ME1 LINE L1 -811 5335 5133 2249 100 0 0 chr6 39883688 39883967 -142531275 - AluSg SINE Alu -31 279 1 850 159 0 7 chr6 39883977 39884115 -142531127 - AluJo/FRAM SINE Alu -1 311 175 407 81 16 0 chr6 39884115 39884177 -142531065 + AluSp/q SINE Alu 241 303 -10 858 188 14 112 chr6 39884178 39884359 -142530883 - L1ME1 LINE L1 -1211 4935 4791 2254 117 10 0 chr6 39884359 39884667 -142530575 - AluSp SINE Alu -2 311 1 858 188 14 112 chr6 39884667 39884772 -142530470 - L1ME1 LINE L1 -1355 4791 4677 724 223 91 65 chr6 39884811 39884978 -142530264 + L1MD3 LINE L1 7657 7818 -177 1694 179 7 23 chr6 39884978 39885279 -142529963 + AluJb SINE Alu 1 296 -16 1853 186 0 0 chr6 39885285 39885581 -142529661 + AluJb SINE Alu 1 296 -16 2150 125 0 0 chr6 39885585 39885886 -142529356 + AluSg SINE Alu 1 301 0 724 223 91 65 chr6 39885886 39886014 -142529228 + L1MD3 LINE L1 7824 7973 -22 1857 123 56 0 chr6 39886014 39886309 -142528933 + AluSx SINE Alu 1 310 0 694 132 0 26 chr6 39886349 39886463 -142528779 + AluJo/FLAM SINE Alu 18 128 -184 2688 3 0 0 chr6 39886465 39886785 -142528457 + AluY SINE Alu 1 320 0 1675 231 21 45 chr6 39886785 39887290 -142527952 - MLT1E LTR MaLR -60 533 42 1718 242 140 35 chr6 39887369 39887645 -142527597 - L1MC5 LINE L1 -523 7438 7193 2055 112 0 85 chr6 39887645 39888011 -142527231 - AluSx SINE Alu 0 312 1 1718 242 140 35 chr6 39888011 39888370 -142526872 - L1MC5 LINE L1 -768 7193 6873 756 211 72 0 chr6 39888370 39888522 -142526720 - FRAM SINE Alu -3 163 1 1718 242 140 35 chr6 39888522 39888618 -142526624 - L1MC5 LINE L1 -1088 6873 6789 1964 118 38 14 chr6 39888618 39888906 -142526336 + AluSx SINE Alu 1 295 -17 1718 242 140 35 chr6 39888906 39888920 -142526322 - L1MC5 LINE L1 -1172 6789 6658 406 276 112 36 chr6 39889521 39889717 -142525525 - MLT1H LTR MaLR -273 276 66 2831 13 0 0 chr6 39890233 39890534 -142524708 - AluYa5 SINE Alu -10 301 1 415 236 57 57 chr6 39891171 39891328 -142523914 + MER5A DNA MER1_type 4 160 -29 739 137 38 30 chr6 39891420 39891551 -142523691 + AluJo/FLAM SINE Alu 1 132 -170 2211 106 3 0 chr6 39891553 39891872 -142523370 + AluSp SINE Alu 1 320 0 2238 117 3 0 chr6 39891875 39892175 -142523067 + AluSq SINE Alu 1 301 -12 33 25 0 0 chr6 39892175 39892215 -142523027 + AT_rich Low_complexity Low_complexity 1 40 0 424 224 37 28 chr6 39892218 39892325 -142522917 + MIR SINE MIR 97 204 -58 373 234 24 65 chr6 39892897 39893021 -142522221 - MIR SINE MIR -110 152 34 585 285 44 0 chr6 39893062 39893199 -142522043 + MIR SINE MIR 46 188 -74 2056 191 77 29 chr6 39893210 39893692 -142521550 - MLT1D LTR MaLR 0 505 1 352 267 55 0 chr6 39893736 39893836 -142521406 + MIR SINE MIR 54 155 -61 2170 123 3 0 chr6 39894174 39894484 -142520758 - AluY SINE Alu 0 311 1 1769 170 3 22 chr6 39894509 39894820 -142520422 + AluJb SINE Alu 1 305 -7 1727 172 3 7 chr6 39894854 39895139 -142520103 + AluJb SINE Alu 10 293 -19 953 177 33 0 chr6 39895139 39895320 -142519922 - L1MB5 LINE L1 -50 6124 5938 23 0 0 0 chr6 39895326 39895349 -142519893 + AT_rich Low_complexity Low_complexity 1 23 0 1702 166 7 11 chr6 39895722 39896028 -142519214 - AluSx SINE Alu 0 305 1 899 229 52 52 chr6 39896065 39896336 -142518906 + L2 LINE L2 3041 3311 -2 2433 87 0 3 chr6 39896895 39897193 -142518049 + AluSc SINE Alu 1 297 -12 790 179 0 0 chr6 39897193 39897310 -142517932 - FLAM_A SINE Alu -15 118 2 569 222 180 37 chr6 39897341 39897726 -142517516 - MLT1H LTR MaLR -7 535 93 2345 110 0 0 chr6 39897726 39898027 -142517215 - AluSx SINE Alu -11 301 1 24 67 0 0 chr6 39898036 39898081 -142517161 + AT_rich Low_complexity Low_complexity 1 45 0 2086 119 0 23 chr6 39898068 39898371 -142516871 - AluSq SINE Alu -17 296 1 275 313 76 30 chr6 39898402 39898533 -142516709 - MIR3 SINE MIR -45 163 27 3006 128 120 77 chr6 39898782 39899075 -142516167 - MER39 LTR ERV1 0 707 428 6791 118 73 40 chr6 39899075 39900312 -142514930 + MER52C LTR ERV1 1 1278 0 3006 128 120 77 chr6 39900312 39900691 -142514551 - MER39 LTR ERV1 -279 428 6 258 330 11 0 chr6 39900796 39900884 -142514358 + MIR SINE MIR 33 121 -87 1845 177 0 0 chr6 39901211 39901517 -142513725 + AluSx SINE Alu 1 306 0 256 130 65 0 chr6 39901747 39901793 -142513449 + MIR SINE MIR 114 162 -100 659 261 0 13 chr6 39901867 39902020 -142513222 + MIR SINE MIR 15 165 -97 2482 84 3 0 chr6 39902055 39902351 -142512891 + AluSp SINE Alu 1 297 -16 518 248 9 18 chr6 39902842 39902985 -142512257 + MIR SINE MIR 14 142 -66 2397 103 0 0 chr6 39903402 39903703 -142511539 + AluSg SINE Alu 1 301 -9 187 100 25 25 chr6 39903804 39903844 -142511398 + (GA)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr6 39903971 39904017 -142511225 + (TG)n Simple_repeat Simple_repeat 2 47 0 2027 148 0 13 chr6 39904548 39904853 -142510389 + AluJo SINE Alu 1 301 -11 269 230 90 30 chr6 39904933 39905033 -142510209 - MIR SINE MIR 0 262 157 288 0 0 0 chr6 39905038 39905070 -142510172 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 315 63 9 chr6 39905121 39905232 -142510010 - MIR SINE MIR -92 170 54 199 333 14 0 chr6 39905210 39905279 -142509963 - MIR SINE MIR -73 135 66 * 197 306 0 47 chr6 39905573 39905658 -142509584 + L2 LINE L2 3005 3085 -187 336 287 35 65 chr6 39906058 39906095 -142509147 + L2 LINE L2 3077 3114 -199 2488 59 10 0 chr6 39906095 39906402 -142508840 - AluY SINE Alu -1 310 1 336 287 35 65 chr6 39906402 39906450 -142508792 + L2 LINE L2 3114 3162 -151 2428 57 4 0 chr6 39906450 39906773 -142508469 + AluSp SINE Alu 1 324 0 336 287 35 65 chr6 39906773 39906915 -142508327 + L2 LINE L2 3162 3299 -14 221 300 167 42 chr6 39908719 39908982 -142506260 + L2 LINE L2 2977 3272 0 2572 72 3 0 chr6 39909110 39909414 -142505828 - AluSp SINE Alu -8 305 1 195 69 0 0 chr6 39909969 39909998 -142505244 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 281 120 52 chr6 39910079 39910428 -142504814 + L2 LINE L2 2851 3223 -49 377 247 173 37 chr6 39911050 39911321 -142503921 - LTR16A LTR ERVL -89 361 54 2403 68 4 0 chr6 39911732 39912035 -142503207 - AluSg1 SINE Alu 0 304 1 1178 142 71 5 chr6 39912076 39912273 -142502969 - AluJo SINE Alu -16 296 87 632 178 0 89 chr6 39912318 39912490 -142502752 - MER53 DNA DNA -3 186 33 2425 96 0 6 chr6 39912490 39912804 -142502438 - AluSq SINE Alu -1 312 1 632 178 0 89 chr6 39912804 39912833 -142502409 - MER53 DNA DNA -156 33 3 1903 85 0 4 chr6 39913610 39913857 -142501385 + AluSg SINE Alu 64 309 -1 724 185 159 15 chr6 39914445 39914640 -142500602 - MIR SINE MIR -31 231 9 245 311 19 0 chr6 39915159 39915265 -142499977 + MIR SINE MIR 30 137 -71 238 283 35 18 chr6 39915280 39915393 -142499849 - L1MC5 LINE L1 -36 7925 7811 1380 212 44 21 chr6 39915394 39915781 -142499461 - L1MC5 LINE L1 -232 7729 7334 1125 244 142 22 chr6 39915782 39916064 -142499178 + L2 LINE L2 2474 2721 -592 2301 118 3 0 chr6 39916064 39916368 -142498874 + AluSx SINE Alu 1 305 -7 1125 244 142 22 chr6 39916368 39916748 -142498494 + L2 LINE L2 2721 3224 -89 26 0 0 0 chr6 39916856 39916882 -142498360 + AT_rich Low_complexity Low_complexity 1 26 0 391 213 13 0 chr6 39916925 39917000 -142498242 - LTR16A1 LTR ERVL 0 457 382 759 240 30 70 chr6 39917034 39917305 -142497937 - LTR16A1 LTR ERVL -171 286 27 375 269 0 90 chr6 39917338 39917494 -142497748 - MIR SINE MIR -74 188 47 246 313 62 9 chr6 39917572 39917684 -142497558 - L2 LINE L2 -9 3304 3187 204 224 20 20 chr6 39917757 39917806 -142497436 - L2 LINE L2 -11 3302 3254 257 250 17 69 chr6 39917826 39917942 -142497300 - MIR SINE MIR -117 145 36 900 110 0 22 chr6 39918765 39918977 -142496265 + FLAM_C SINE Alu 1 209 0 475 247 76 36 chr6 39919171 39919294 -142495948 - L1MC5 LINE L1 -797 7164 7047 1962 156 0 13 chr6 39919294 39919609 -142495633 - AluJo SINE Alu -1 311 1 2281 109 0 3 chr6 39919611 39919915 -142495327 - AluSg SINE Alu -7 303 1 2456 100 0 0 chr6 39919917 39920227 -142495015 - AluSg SINE Alu 0 310 1 475 247 76 36 chr6 39920227 39920320 -142494922 - L1MC5 LINE L1 -914 7047 6933 1595 178 108 46 chr6 39920339 39920756 -142494486 - MSTB2 LTR MaLR 0 457 15 1688 159 29 63 chr6 39920995 39921310 -142493932 - AluJb SINE Alu -6 306 3 2335 119 0 0 chr6 39921370 39921681 -142493561 - AluSx SINE Alu 0 312 2 337 273 31 98 chr6 39921698 39921773 -142493469 - L1MB8 LINE L1 -295 5883 5805 2057 162 0 3 chr6 39921773 39922082 -142493160 - AluJb SINE Alu -4 308 1 337 273 31 98 chr6 39922082 39922200 -142493042 - L1MB8 LINE L1 -373 5805 5703 674 282 14 14 chr6 39922251 39922467 -142492775 - L1MB8 LINE L1 -479 5691 5476 498 153 87 153 chr6 39922492 39922611 -142492631 - L1MC5 LINE L1 -997 6964 6839 1974 136 3 17 chr6 39922611 39922906 -142492336 - AluSx SINE Alu -21 291 1 498 153 87 153 chr6 39922906 39922957 -142492285 - L1MC5 LINE L1 -1122 6839 6786 2268 65 44 3 chr6 39922957 39923251 -142491991 + AluY SINE Alu 1 306 -5 498 153 87 153 chr6 39923251 39923333 -142491909 - L1MC5 LINE L1 -1175 6786 6728 2821 147 19 30 chr6 39923347 39923630 -142491612 - L1MB7 LINE L1 -16 6168 5893 2407 103 3 0 chr6 39923630 39923942 -142491300 - AluSq SINE Alu 0 313 1 2821 147 19 30 chr6 39923942 39924229 -142491013 - L1MB7 LINE L1 -291 5893 5604 2253 108 0 22 chr6 39924229 39924543 -142490699 - AluSx SINE Alu -5 307 1 2310 109 0 7 chr6 39924558 39924862 -142490380 - AluJb SINE Alu -10 302 1 240 292 33 58 chr6 39924925 39925045 -142490197 - MIR3 SINE MIR -31 177 61 2505 80 3 13 chr6 39925192 39925505 -142489737 - AluSp SINE Alu -3 310 1 354 219 44 44 chr6 39925610 39925724 -142489518 + MER103 DNA DNA 4 117 -49 3427 144 8 14 chr6 39925730 39926349 -142488893 + L1MC1 LINE L1 5719 6333 0 265 292 169 27 chr6 39926349 39926650 -142488592 - L2 LINE L2 -134 3179 2836 24 53 0 0 chr6 39926744 39926782 -142488460 + AT_rich Low_complexity Low_complexity 1 38 0 326 117 0 50 chr6 39926782 39926842 -142488400 - HY4 scRNA scRNA 0 93 37 480 279 333 13 chr6 39926842 39927671 -142487571 - L2 LINE L2 -611 2703 1610 245 289 211 0 chr6 39927883 39927997 -142487245 - MIR SINE MIR -73 189 52 196 211 19 0 chr6 39928087 39928139 -142487103 - MIR SINE MIR -77 131 79 182 182 0 0 chr6 39928371 39928404 -142486838 + MER5B DNA MER1_type 7 39 -139 1828 163 0 14 chr6 39928441 39928729 -142486513 + AluJb SINE Alu 1 284 -28 727 276 104 0 chr6 39928780 39929030 -142486212 - L1ME3 LINE L1 -86 6076 5801 1119 256 91 22 chr6 39929034 39929397 -142485845 - LTR16A LTR ERVL -4 446 59 286 298 24 56 chr6 39929645 39929853 -142485389 - MERVL LTR ERVL -228 5257 5059 389 355 27 11 chr6 39930102 39930288 -142484954 - MERVL LTR ERVL -926 4838 4650 697 92 0 0 chr6 39930317 39930415 -142484827 - AluJ/FLAM SINE Alu -213 99 2 1076 129 84 44 chr6 39930418 39930455 -142484787 - L1MA8 LINE L1 0 6291 6257 2143 123 0 10 chr6 39930455 39930755 -142484487 + AluJb SINE Alu 1 297 -15 1076 129 84 44 chr6 39930755 39930942 -142484300 - L1MA8 LINE L1 -34 6257 6058 2186 285 90 21 chr6 39931081 39931637 -142483605 - HERV16 LTR ERVL -2763 2233 1717 1546 157 3 70 chr6 39931637 39931923 -142483319 - AluJo SINE Alu -45 267 1 2186 285 90 21 chr6 39931923 39932458 -142482784 - HERV16 LTR ERVL -3279 1717 1044 429 298 64 57 chr6 39932586 39932975 -142482267 - HERV16 LTR ERVL -4450 546 155 1586 124 75 26 chr6 39933130 39933162 -142482080 - L1P4 LINE L1 -355 5811 5782 2533 88 0 0 chr6 39933162 39933468 -142481774 - AluSq SINE Alu -7 306 1 1586 124 75 26 chr6 39933468 39933741 -142481501 - L1P4 LINE L1 -384 5782 5491 1130 137 0 58 chr6 39933742 39933932 -142481310 - AluSg/x SINE Alu 0 310 132 2457 88 7 0 chr6 39933932 39934238 -142481004 - AluSp SINE Alu -5 308 1 1023 191 40 1 chr6 39934238 39934502 -142480740 + L1PA16 LINE L1 5858 6161 0 549 263 184 34 chr6 39934519 39934794 -142480448 - LTR16A LTR ERVL -96 357 54 1049 267 52 6 chr6 39934839 39935165 -142480077 - L1ME LINE L1 -366 5796 5456 275 267 125 51 chr6 39935503 39935679 -142479563 - MIR SINE MIR -47 215 27 516 203 0 77 chr6 39935924 39935995 -142479247 - MER5A DNA MER1_type -53 136 80 1794 171 24 3 chr6 39935995 39936293 -142478949 - AluJo SINE Alu -8 304 1 516 203 0 77 chr6 39936293 39936364 -142478878 - MER5A DNA MER1_type -109 80 5 199 293 69 86 chr6 39936951 39937010 -142478232 + MER5A DNA MER1_type 75 133 -56 2445 90 0 0 chr6 39937010 39937309 -142477933 - AluSx SINE Alu -13 299 1 199 293 69 86 chr6 39937309 39937365 -142477877 + MER5A DNA MER1_type 133 188 -1 221 218 89 69 chr6 39938214 39938315 -142476927 + MIR3 SINE MIR 106 208 0 361 268 58 29 chr6 39938350 39938488 -142476754 + MIR SINE MIR 24 165 -97 2148 101 7 20 chr6 39938498 39938804 -142476438 - AluSx SINE Alu -10 302 1 559 230 22 7 chr6 39938853 39938988 -142476254 - MIR SINE MIR 0 262 126 335 205 60 0 chr6 39939490 39939573 -142475669 - MER5B DNA MER1_type 0 178 91 2282 93 0 0 chr6 39939589 39939916 -142475326 - AluSc SINE Alu 0 327 1 606 215 0 7 chr6 39939916 39940051 -142475191 - L1ME LINE L1 -814 5332 5199 1997 159 7 3 chr6 39940072 39940374 -142474868 + AluJb SINE Alu 1 303 -9 1995 154 44 29 chr6 39940390 39940441 -142474801 + L1M4 LINE L1 4924 4973 -1207 2972 126 41 54 chr6 39940441 39940975 -142474267 - MER1A DNA MER1_type 0 527 1 1995 154 44 29 chr6 39940975 39941068 -142474174 + L1M4 LINE L1 4973 5063 -1117 2271 117 0 7 chr6 39941068 39941377 -142473865 + AluSx SINE Alu 1 307 -5 1995 154 44 29 chr6 39941377 39941812 -142473430 + L1M4 LINE L1 5063 5501 -679 278 167 42 0 chr6 39941812 39941860 -142473382 + MER57A LTR ERV1 295 344 -59 444 179 12 3 chr6 39941869 39941966 -142473276 + L1M4 LINE L1 5478 5573 -595 5117 93 17 14 chr6 39941966 39942731 -142472511 - Tigger1 DNA MER2_type -1086 1332 566 335 163 0 8 chr6 39942746 39942810 -142472432 - Alu SINE Alu -249 53 1 283 237 69 69 chr6 39942909 39943040 -142472202 - MIR3 SINE MIR -30 178 48 229 238 79 0 chr6 39943225 39943288 -142471954 + MER5A DNA MER1_type 6 73 -116 2253 107 3 10 chr6 39943306 39943614 -142471628 + AluSg SINE Alu 1 306 -4 516 280 117 57 chr6 39943828 39944017 -142471225 + MLT1H1 LTR MaLR 184 360 -195 2536 66 0 3 chr6 39944017 39944322 -142470920 - AluY SINE Alu -7 304 1 516 280 117 57 chr6 39944322 39944482 -142470760 + MLT1H1 LTR MaLR 360 554 -1 330 260 31 10 chr6 39944483 39944579 -142470663 + MER5A DNA MER1_type 92 189 0 1354 145 0 26 chr6 39944628 39944855 -142470387 + AluJo SINE Alu 92 312 0 465 254 98 71 chr6 39945298 39945522 -142469720 - L1ME2 LINE L1 -1 6163 5932 * 2822 127 38 75 chr6 39945520 39945632 -142469610 - L1MDa LINE L1 -4137 2403 2288 189 107 0 0 chr6 39945632 39945660 -142469582 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 2822 127 38 75 chr6 39945660 39945803 -142469439 - L1MDa LINE L1 -4252 2288 2141 225 0 0 0 chr6 39945803 39945828 -142469414 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr6 39945827 39945848 -142469394 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 2822 127 38 75 chr6 39945828 39945848 -142469394 - L1MDa LINE L1 -4399 2141 2122 2198 108 3 0 chr6 39945848 39946136 -142469106 - AluSq SINE Alu -13 300 12 2822 127 38 75 chr6 39946136 39946533 -142468709 - L1MDa LINE L1 -4418 2122 1773 207 0 0 0 chr6 39946535 39946558 -142468684 + (TTA)n Simple_repeat Simple_repeat 2 24 0 933 165 78 73 chr6 39946563 39946769 -142468473 - AluJo SINE Alu -20 292 86 4237 199 137 64 chr6 39946769 39947188 -142468054 - L1MDa LINE L1 -4760 1780 1393 2040 133 7 10 chr6 39947188 39947488 -142467754 - AluSx SINE Alu -13 299 1 4237 199 137 64 chr6 39947488 39947771 -142467471 - L1MDa LINE L1 -5147 1393 1132 1851 180 10 0 chr6 39947771 39948071 -142467171 - AluJb SINE Alu -9 303 1 4237 199 137 64 chr6 39948071 39948999 -142466243 - L1MDa LINE L1 -5408 1132 18 397 214 11 0 chr6 39949000 39949089 -142466153 - L1ME2 LINE L1 -213 5949 5860 3523 134 19 28 chr6 39949099 39949654 -142465588 - L1MB1 LINE L1 -1 6167 5609 183 42 0 0 chr6 39949654 39949678 -142465564 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2100 103 0 3 chr6 39949678 39949960 -142465282 - AluSq SINE Alu -31 282 2 3523 134 19 28 chr6 39949960 39949983 -142465259 - L1MB1 LINE L1 -557 5611 5593 877 138 0 29 chr6 39949985 39950123 -142465119 - AluJo SINE Alu -178 134 1 4111 159 27 47 chr6 39950123 39951416 -142463826 - L1MB1 LINE L1 -561 5607 4354 359 206 76 0 chr6 39951479 39951571 -142463671 - L1ME2 LINE L1 -295 5875 5777 413 250 0 24 chr6 39951612 39951736 -142463506 - L1ME2 LINE L1 -364 5798 5678 863 284 52 66 chr6 39951747 39952270 -142462972 + L2 LINE L2 2605 3133 -180 2030 113 10 3 chr6 39952270 39952563 -142462679 - AluSx SINE Alu -11 301 7 863 284 52 66 chr6 39952563 39952741 -142462501 + L2 LINE L2 3133 3312 -1 193 94 31 0 chr6 39952851 39952883 -142462359 + MER5A DNA MER1_type 43 75 -114 * 375 270 0 0 chr6 39952876 39952965 -142462277 - MER5A DNA MER1_type -80 109 21 232 280 231 28 chr6 39952949 39953092 -142462150 + MIR SINE MIR 80 251 -11 * 378 129 0 0 chr6 39953589 39953651 -142461591 + (TG)n Simple_repeat Simple_repeat 2 63 0 277 312 18 46 chr6 39954396 39954505 -142460737 + MIR SINE MIR 32 137 -71 501 267 42 0 chr6 39954587 39954707 -142460535 + L2 LINE L2 3188 3312 -1 201 311 74 41 chr6 39955832 39955954 -142459288 + MIR SINE MIR 59 184 -78 1692 256 81 12 chr6 39958572 39959454 -142455788 + L2 LINE L2 2301 3249 -64 891 202 130 0 chr6 39960032 39960279 -142454963 - LTR16C LTR ERVL -2 489 211 348 299 108 25 chr6 39960283 39960487 -142454755 + L2 LINE L2 3079 3299 -14 633 170 101 57 chr6 39961281 39961440 -142453802 - MIR SINE MIR -90 172 7 685 231 91 20 chr6 39962037 39962236 -142453006 + MIR SINE MIR 47 259 -3 184 220 20 20 chr6 39962469 39962519 -142452723 - L2 LINE L2 -16 3256 3207 534 344 5 27 chr6 39962582 39962806 -142452436 - L2 LINE L2 0 3313 3095 515 332 127 22 chr6 39963288 39963517 -142451725 - MIR SINE MIR -1 261 9 361 303 180 0 chr6 39963528 39963706 -142451536 + MIR SINE MIR 47 256 -6 314 315 290 6 chr6 39963778 39963940 -142451302 + MIR SINE MIR 50 257 -5 735 289 36 24 chr6 39963980 39964058 -142451184 + MIR SINE MIR 6 82 -180 3161 144 40 33 chr6 39964058 39964090 -142451152 - MLT2B3 LTR ERVL 0 554 524 308 83 21 0 chr6 39964090 39964138 -142451104 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 3161 144 40 33 chr6 39964138 39964655 -142450587 - MLT2B3 LTR ERVL -30 524 1 735 289 36 24 chr6 39964655 39964829 -142450413 + MIR SINE MIR 82 261 -1 271 331 147 0 chr6 39964927 39965063 -142450179 + MIR SINE MIR 107 262 0 309 229 175 0 chr6 39965486 39965609 -142449633 - MIR SINE MIR -54 208 59 542 262 96 12 chr6 39966136 39966323 -142448919 - L1MC/D LINE L1 -435 5807 5604 219 88 0 0 chr6 39968736 39968770 -142446472 + (CGGGGG)n Simple_repeat Simple_repeat 6 39 0 835 217 99 11 chr6 39969248 39969513 -142445729 - L1MC3 LINE L1 0 8042 7692 245 267 53 0 chr6 39969550 39969625 -142445617 - L1MC4 LINE L1 -365 7677 7599 275 321 95 7 chr6 39969641 39969778 -142445464 + L2 LINE L2 3162 3310 -3 293 306 119 68 chr6 39969811 39970180 -142445062 - L2 LINE L2 -9 3263 2876 2299 107 31 6 chr6 39972290 39972617 -142442625 - MER1B DNA MER1_type 0 337 3 847 225 97 18 chr6 39972671 39972898 -142442344 - MIR SINE MIR -15 247 3 182 278 167 22 chr6 39977426 39977516 -142437726 + MIR SINE MIR 41 143 -65 569 232 103 0 chr6 39978580 39978735 -142436507 + MIR SINE MIR 21 191 -71 271 206 27 14 chr6 39979211 39979284 -142435958 + L2 LINE L2 2991 3064 -208 226 237 79 13 chr6 39981300 39981376 -142433866 - MIR3 SINE MIR -7 201 121 1836 161 7 3 chr6 39981574 39981879 -142433363 + AluJb SINE Alu 1 306 -6 268 309 66 28 chr6 39981929 39982110 -142433132 + L1MC4a LINE L1 5888 6075 -1733 206 236 0 0 chr6 39982179 39982234 -142433008 + A-rich Low_complexity Low_complexity 1 55 0 271 283 0 50 chr6 39983134 39983233 -142432009 - MIR3 SINE MIR -3 205 112 322 333 49 0 chr6 39984032 39984155 -142431087 + L2 LINE L2 3158 3286 -27 2089 105 10 3 chr6 39984172 39984467 -142430775 + AluSx SINE Alu 11 307 -5 2474 54 3 13 chr6 39984467 39984781 -142430461 + AluY SINE Alu 1 311 0 837 230 104 142 chr6 39984806 39985327 -142429915 - L2 LINE L2 -6 3307 2807 200 229 229 0 chr6 39986352 39986413 -142428829 - MIR SINE MIR -70 192 118 2005 105 14 20 chr6 39987189 39987484 -142427758 + AluSq SINE Alu 7 299 -14 728 271 44 0 chr6 39987653 39987834 -142427408 + MER5A DNA MER1_type 1 189 0 206 286 104 0 chr6 39987835 39987912 -142427330 + L3b LINE CR1 1493 1577 -6 453 272 210 6 chr6 39988067 39988229 -142427013 - MER91A DNA MER1_type -1 195 1 1833 150 35 3 chr6 39988936 39989222 -142426020 - AluJb SINE Alu -17 295 1 250 298 0 0 chr6 39989223 39989280 -142425962 - MIR SINE MIR -102 160 104 250 279 2 0 chr6 39989729 39989794 -142425448 - MIR SINE MIR -54 154 88 241 292 192 8 chr6 39990075 39990195 -142425047 - MIR3 SINE MIR -15 193 52 250 283 111 10 chr6 39990457 39990556 -142424686 - MIR SINE MIR -76 132 24 244 318 140 9 chr6 39992985 39993092 -142422150 + MIR3 SINE MIR 88 208 0 352 299 51 13 chr6 39995011 39995168 -142420074 + MIR SINE MIR 51 213 -49 245 271 0 60 chr6 39995222 39995355 -142419887 + GA-rich Low_complexity Low_complexity 2 126 0 209 313 16 0 chr6 39995521 39995585 -142419657 + L2 LINE L2 2990 3054 -218 236 315 41 0 chr6 39995595 39995668 -142419574 - MIR3 SINE MIR -50 158 83 394 196 20 0 chr6 39996599 39996701 -142418541 + (CA)n Simple_repeat Simple_repeat 2 105 0 192 152 0 0 chr6 39998043 39998076 -142417166 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 295 228 55 79 chr6 39998176 39998303 -142416939 - L2 LINE L2 -128 3144 3021 2212 98 24 3 chr6 39999366 39999653 -142415589 + AluSq SINE Alu 1 293 -20 943 154 0 0 chr6 39999727 39999870 -142415372 - FLAM_C SINE Alu 0 143 1 1294 201 115 59 chr6 39999870 40000243 -142414999 + MLT1J LTR MaLR 61 454 -57 185 262 0 0 chr6 40000671 40000713 -142414529 + MIR SINE MIR 59 100 -162 319 283 48 51 chr6 40000872 40000916 -142414326 - MIR SINE MIR -63 145 102 2123 119 51 0 chr6 40000916 40001211 -142414031 - AluSx SINE Alu 0 312 3 319 283 48 51 chr6 40001211 40001332 -142413910 - MIR SINE MIR -106 102 24 259 350 8 16 chr6 40001574 40001697 -142413545 + MLT1K LTR MaLR 219 340 -248 258 280 30 11 chr6 40002116 40002254 -142412988 + MIR SINE MIR 16 152 -68 186 274 118 49 chr6 40002696 40002798 -142412444 - MIR SINE MIR -119 143 35 211 298 186 0 chr6 40002805 40002929 -142412313 - MIR SINE MIR -60 202 56 444 337 60 16 chr6 40003862 40004114 -142411128 - L2 LINE L2 -101 3212 2950 390 295 111 46 chr6 40004213 40004430 -142410812 - MIR SINE MIR -24 238 8 612 233 95 57 chr6 40005182 40005440 -142409802 - L2 LINE L2 -2 3311 3039 2008 88 19 88 chr6 40005440 40005758 -142409484 - AluSx SINE Alu -10 302 7 612 233 95 57 chr6 40005758 40005795 -142409447 - L2 LINE L2 -274 3039 3005 326 314 54 32 chr6 40005822 40006007 -142409235 - MIR3 SINE MIR 0 208 20 529 246 154 10 chr6 40006709 40006904 -142408338 + MIR SINE MIR 20 242 -20 277 264 22 11 chr6 40007176 40007267 -142407975 - MIR SINE MIR -57 205 114 1491 160 103 18 chr6 40007677 40007959 -142407283 + AluJo SINE Alu 1 306 -6 197 178 22 0 chr6 40007959 40008004 -142407238 + GA-rich Low_complexity Low_complexity 1 46 0 2170 123 0 0 chr6 40008040 40008356 -142406886 + AluSx SINE Alu 1 316 0 186 43 0 0 chr6 40008816 40008839 -142406403 + (CA)n Simple_repeat Simple_repeat 2 24 0 292 258 108 0 chr6 40009286 40009379 -142405863 - L2 LINE L2 -14 3299 3197 2456 74 0 16 chr6 40009398 40009708 -142405534 - AluSx SINE Alu -7 305 1 201 323 146 0 chr6 40010316 40010412 -142404830 - MIR3 SINE MIR -87 121 12 318 250 60 17 chr6 40010825 40010941 -142404301 - MIR3 SINE MIR -7 201 81 1007 202 20 28 chr6 40010958 40011205 -142404037 - MIR SINE MIR -16 246 2 679 215 90 20 chr6 40011328 40011528 -142403714 - MIR SINE MIR -13 249 36 955 221 84 39 chr6 40011955 40012240 -142403002 - AluJo SINE Alu 0 302 5 239 299 175 22 chr6 40012525 40012662 -142402580 + MIR SINE MIR 84 241 -21 1954 83 132 0 chr6 40012712 40012977 -142402265 - AluSg SINE Alu -10 300 1 273 301 66 22 chr6 40013151 40013287 -142401955 + MIR3 SINE MIR 35 176 -32 352 280 56 28 chr6 40013408 40013551 -142401691 - MIR SINE MIR -50 212 66 248 246 108 0 chr6 40013915 40013980 -142401262 - MIR SINE MIR -80 182 111 209 211 0 0 chr6 40014296 40014334 -142400908 - MIR SINE MIR -111 151 114 352 246 51 42 chr6 40014550 40014668 -142400574 - MIR SINE MIR -74 188 70 2443 50 40 7 chr6 40014729 40015029 -142400213 + AluY SINE Alu 1 310 -1 244 263 95 32 chr6 40015461 40015556 -142399686 - MIR SINE MIR -90 172 72 209 274 27 0 chr6 40015678 40015751 -142399491 + MIR SINE MIR 84 158 -104 200 263 0 0 chr6 40016007 40016066 -142399176 + MIR SINE MIR 91 132 -76 302 270 61 26 chr6 40016929 40017044 -142398198 + L2 LINE L2 3109 3227 -45 2195 120 13 0 chr6 40017319 40017619 -142397623 - AluSx SINE Alu -8 304 1 1864 172 3 0 chr6 40018426 40018722 -142396520 - AluJo SINE Alu -15 297 1 374 252 99 32 chr6 40018745 40019044 -142396198 + MLT1J LTR MaLR 115 507 -4 2673 62 0 0 chr6 40019061 40019370 -142395872 + AluY SINE Alu 1 309 -2 2297 112 0 3 chr6 40019730 40020042 -142395200 + AluSx SINE Alu 1 311 -1 265 337 51 0 chr6 40020308 40020406 -142394836 - MIR3 SINE MIR -54 154 52 532 234 14 14 chr6 40020457 40020602 -142394640 + L2 LINE L2 2935 3079 -234 704 179 0 0 chr6 40020602 40020719 -142394523 + AluJo/FLAM SINE Alu 1 117 -195 2353 106 0 10 chr6 40020720 40021031 -142394211 - AluSx SINE Alu -4 308 1 374 266 206 42 chr6 40021065 40021279 -142393963 + L2 LINE L2 3065 3313 0 526 204 15 8 chr6 40021637 40021769 -142393473 + ALR/Alpha Satellite centromeric 36 168 -4 585 303 16 0 chr6 40022010 40022195 -142393047 + L1ME3 LINE L1 5968 6155 -7 1646 163 16 39 chr6 40023469 40023775 -142391467 + AluJb SINE Alu 1 299 -13 2538 51 3 0 chr6 40024013 40024306 -142390936 - AluY SINE Alu -15 296 3 514 296 77 15 chr6 40024780 40024989 -142390253 - MIR SINE MIR 0 262 43 1557 247 159 35 chr6 40025868 40026806 -142388436 + L2 LINE L2 2171 3312 -1 250 254 16 0 chr6 40026965 40027028 -142388214 + L2 LINE L2 2998 3061 -252 321 187 93 13 chr6 40027510 40027585 -142387657 + MER5A DNA MER1_type 26 106 -83 187 263 0 0 chr6 40028702 40028740 -142386502 + MIR SINE MIR 112 149 -59 316 286 88 23 chr6 40032593 40032764 -142382478 - MIR SINE MIR -3 259 78 1627 196 0 24 chr6 40032764 40033055 -142382187 + AluJb SINE Alu 1 284 -28 2306 80 35 0 chr6 40033055 40033344 -142381898 - AluY SINE Alu -12 299 1 222 309 98 24 chr6 40033753 40033876 -142381366 - MIR SINE MIR -8 254 123 255 159 0 0 chr6 40034095 40034139 -142381103 + MADE1 DNA Mariner 1 44 -36 26 0 0 0 chr6 40034139 40034165 -142381077 + AT_rich Low_complexity Low_complexity 1 26 0 305 77 0 0 chr6 40034177 40034216 -142381026 - Alu SINE Alu -261 39 1 * 349 105 0 18 chr6 40034216 40034269 -142380973 + MADE1 DNA Mariner 29 80 0 1512 196 17 34 chr6 40034448 40034744 -142380498 + AluJo SINE Alu 2 292 -20 22 0 0 0 chr6 40034767 40034789 -142380453 + AT_rich Low_complexity Low_complexity 1 22 0 586 162 50 0 chr6 40036477 40036576 -142378666 - AluJb SINE Alu -207 105 2 612 94 0 0 chr6 40037839 40037924 -142377318 - AluSg/x SINE Alu -38 274 190 1802 122 16 4 chr6 40037924 40038169 -142377073 - AluSq SINE Alu -65 248 1 232 185 46 0 chr6 40038470 40038578 -142376664 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 229 280 121 55 chr6 40040673 40040855 -142374387 + MIR SINE MIR 14 207 -55 2629 259 66 11 chr6 40040905 40040931 -142374311 + L2 LINE L2 2135 2158 -1156 782 186 8 103 chr6 40040931 40041173 -142374069 + MER20 DNA MER1_type 1 219 0 2629 259 66 11 chr6 40041173 40041945 -142373297 + L2 LINE L2 2158 2977 -337 457 291 82 48 chr6 40042430 40042636 -142372606 + MIR SINE MIR 2 214 -48 311 226 57 65 chr6 40042640 40042764 -142372478 + HAL1 LINE L1 2385 2507 0 224 200 60 0 chr6 40042776 40042826 -142372416 + MIR SINE MIR 204 256 -6 1155 74 0 0 chr6 40044786 40044921 -142370321 + AluSq/x SINE Alu 1 135 -177 1993 116 4 4 chr6 40044923 40045199 -142370043 + AluYa5 SINE Alu 16 291 -20 199 267 17 17 chr6 40045300 40045360 -142369882 + L2 LINE L2 3119 3178 -94 2481 83 3 0 chr6 40046580 40046892 -142368350 + AluSq SINE Alu 1 313 0 2242 134 0 3 chr6 40046901 40047214 -142368028 + AluSx SINE Alu 1 312 0 244 229 0 43 chr6 40048671 40048741 -142366501 - MER5A DNA MER1_type -88 101 35 197 333 0 13 chr6 40048688 40048763 -142366479 + MER5A DNA MER1_type 115 188 -1 * 356 221 177 0 chr6 40048903 40049016 -142366226 + MER94 DNA DNA 1 133 -1 2573 147 97 57 chr6 40049118 40049381 -142365861 - MER7C DNA MER2_type -2426 602 351 1682 188 0 3 chr6 40049381 40049663 -142365579 + AluJo SINE Alu 17 297 -15 1996 144 37 0 chr6 40049667 40049965 -142365277 + AluSx SINE Alu 1 309 -3 2573 147 97 57 chr6 40049965 40050274 -142364968 - MER7C DNA MER2_type -2679 349 2 2099 140 0 3 chr6 40050762 40051055 -142364187 + AluSx SINE Alu 1 292 -20 266 146 0 0 chr6 40051140 40051181 -142364061 + Alu SINE Alu 251 291 -11 2526 70 0 10 chr6 40051432 40051746 -142363496 + AluY SINE Alu 1 311 0 349 235 227 25 chr6 40052049 40052168 -142363074 - MER46A DNA MER2_type -90 146 4 * 1168 151 21 0 chr6 40052168 40052259 -142362983 + MER46A DNA MER2_type 142 236 0 688 200 0 0 chr6 40052485 40052595 -142362647 + FLAM_C SINE Alu 2 111 -32 234 91 0 0 chr6 40052597 40052630 -142362612 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 847 138 22 36 chr6 40052658 40052796 -142362446 - FLAM_C SINE Alu -1 142 7 296 294 59 25 chr6 40053275 40053394 -142361848 - MIR3 SINE MIR -41 167 45 1455 175 58 55 chr6 40053687 40053995 -142361247 + AluJb SINE Alu 1 309 -3 235 324 14 0 chr6 40054004 40054075 -142361167 - MIR3 SINE MIR -13 195 124 1722 174 0 24 chr6 40054180 40054316 -142360926 + AluSx SINE Alu 1 139 -173 2527 60 0 3 chr6 40054316 40054617 -142360625 + AluY SINE Alu 1 300 -11 1722 174 0 24 chr6 40054617 40054808 -142360434 + AluSx SINE Alu 139 312 0 3762 206 89 102 chr6 40055061 40055696 -142359546 + L1MC3 LINE L1 6350 6991 -794 2300 99 0 0 chr6 40055696 40056000 -142359242 + AluY SINE Alu 1 304 -7 3762 206 89 102 chr6 40056000 40056157 -142359085 + L1MC3 LINE L1 6991 7148 -637 338 156 18 128 chr6 40056157 40056266 -142358976 + MLT1F1 LTR MaLR 35 131 -436 3762 206 89 102 chr6 40056266 40056799 -142358443 + L1MC3 LINE L1 7148 7766 -19 2225 119 0 0 chr6 40056869 40057172 -142358070 + AluSx SINE Alu 1 303 -9 736 208 25 0 chr6 40059730 40059889 -142355353 + LTR65 LTR ERV1 1 163 -506 386 268 34 48 chr6 40060018 40060231 -142355011 + LTR65 LTR ERV1 396 649 -17 1015 266 45 34 chr6 40060415 40060772 -142354470 - L2 LINE L2 -1226 2088 1728 443 256 150 58 chr6 40060786 40060918 -142354324 + L1MC4a LINE L1 5705 5823 -1985 1678 151 17 34 chr6 40060918 40061210 -142354032 - AluJo SINE Alu -25 287 1 443 256 150 58 chr6 40061210 40061264 -142353978 + L1MC4a LINE L1 5823 5871 -1937 2313 95 20 0 chr6 40061264 40061559 -142353683 + AluSx SINE Alu 1 301 -11 443 256 150 58 chr6 40061559 40061804 -142353438 + L1MC4a LINE L1 5871 6177 -1631 200 211 0 0 chr6 40061845 40061883 -142353359 + L2 LINE L2 3214 3251 -21 28 38 0 19 chr6 40062092 40062112 -142353130 + AT_rich Low_complexity Low_complexity 1 20 -32 1307 224 43 11 chr6 40062112 40062389 -142352853 + AluJo SINE Alu 2 287 -25 28 38 0 19 chr6 40062389 40062421 -142352821 + AT_rich Low_complexity Low_complexity 20 52 0 469 291 91 19 chr6 40062744 40062954 -142352288 + L1MC5 LINE L1 6995 7219 -742 4589 155 78 39 chr6 40063056 40063132 -142352110 + L1MB3 LINE L1 4663 4735 -1448 2065 105 3 14 chr6 40063132 40063427 -142351815 + AluSx SINE Alu 1 292 -20 4589 155 78 39 chr6 40063427 40064807 -142350435 + L1MB3 LINE L1 4735 6178 -5 2185 111 20 0 chr6 40065389 40065687 -142349555 - AluSx SINE Alu -8 304 1 2088 122 6 31 chr6 40065870 40066189 -142349053 - AluSq SINE Alu -2 311 1 2391 82 0 7 chr6 40067402 40067705 -142347537 - AluY SINE Alu -10 301 1 1635 200 0 17 chr6 40067729 40068029 -142347213 - AluJb SINE Alu -14 298 4 3923 151 70 21 chr6 40068034 40068281 -142346961 - L1MC1 LINE L1 -11 6322 6088 2276 96 3 0 chr6 40068281 40068572 -142346670 + AluSg SINE Alu 1 292 -18 3923 151 70 21 chr6 40068572 40069260 -142345982 - L1MC1 LINE L1 -245 6088 5324 2210 112 3 0 chr6 40069260 40069556 -142345686 - AluSp SINE Alu -14 299 3 2066 127 0 42 chr6 40069568 40069876 -142345366 - AluSx SINE Alu -17 295 1 2353 60 0 30 chr6 40069885 40070187 -142345055 - AluY SINE Alu -18 293 1 1494 242 32 27 chr6 40070189 40070389 -142344853 - L1M4 LINE L1 -2366 3780 3582 1602 186 41 0 chr6 40070389 40070680 -142344562 + AluJb SINE Alu 1 303 -9 1494 242 32 27 chr6 40070680 40070921 -142344321 - L1M4 LINE L1 -2564 3582 3337 681 170 10 0 chr6 40070922 40071022 -142344220 - AluJ/FLAM SINE Alu -210 102 2 2096 114 71 8 chr6 40071022 40071390 -142343852 - L1MCa LINE L1 -4827 1599 1209 3110 163 54 2 chr6 40071390 40071892 -142343350 - MER44D DNA MER2_type 0 605 23 2245 101 3 0 chr6 40071940 40072236 -142343006 - AluSc SINE Alu -12 297 1 803 203 0 0 chr6 40072241 40072369 -142342873 - FLAM_A SINE Alu -5 128 1 2371 154 68 8 chr6 40072370 40072884 -142342358 - L1MCa LINE L1 -5221 1205 631 2080 128 0 3 chr6 40072887 40073184 -142342058 - AluSx SINE Alu -16 296 1 995 233 54 0 chr6 40073221 40073467 -142341775 + L1MB5 LINE L1 5908 6174 0 367 276 125 61 chr6 40073500 40073714 -142341528 + L1ME4a LINE L1 5789 6031 -90 2267 112 0 0 chr6 40073714 40074010 -142341232 + AluSx SINE Alu 1 296 -16 367 276 125 61 chr6 40074010 40074106 -142341136 + L1ME4a LINE L1 6031 6119 -2 1737 82 141 37 chr6 40074109 40074378 -142340864 - AluSc SINE Alu -12 297 1 2274 199 61 21 chr6 40074452 40075108 -142340134 + L1MCa LINE L1 2365 3039 -3387 1070 164 5 32 chr6 40075130 40075319 -142339923 + AluJo SINE Alu 7 190 -122 219 186 0 0 chr6 40075340 40075383 -142339859 + A-rich Low_complexity Low_complexity 1 43 0 503 130 0 11 chr6 40075384 40075476 -142339766 + (GGGA)n Simple_repeat Simple_repeat 4 94 0 370 156 0 0 chr6 40075476 40075540 -142339702 + L1MCa LINE L1 3046 3109 -3317 731 167 16 16 chr6 40075543 40075669 -142339573 + AluJo SINE Alu 11 136 -176 1830 201 115 66 chr6 40075709 40076437 -142338805 + L1MCa LINE L1 3121 3884 -2542 356 145 0 72 chr6 40076472 40076541 -142338701 + Charlie5 DNA MER1_type 1 64 -2548 293 89 54 0 chr6 40076543 40076599 -142338643 + Charlie5 DNA MER1_type 2428 2486 -126 1752 167 7 13 chr6 40076803 40077102 -142338140 + AluJb SINE Alu 1 297 -15 309 109 0 0 chr6 40077102 40077148 -142338094 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 2059 126 3 26 chr6 40077168 40077477 -142337765 - AluSx SINE Alu -10 302 1 1268 199 63 24 chr6 40077531 40077818 -142337424 + AluJo SINE Alu 1 298 -14 1941 135 0 3 chr6 40079386 40079743 -142335499 - AluSx SINE Alu 0 356 1 1889 125 57 27 chr6 40079987 40080283 -142334959 + AluJb SINE Alu 1 305 -7 259 271 299 9 chr6 40081396 40081503 -142333739 + MIR SINE MIR 103 240 -22 283 248 171 47 chr6 40081689 40081818 -142333424 + MER20B DNA MER1_type 45 189 -594 2303 79 4 0 chr6 40081986 40082265 -142332977 + AluSc SINE Alu 1 280 -29 288 77 0 0 chr6 40082265 40082304 -142332938 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2359 102 0 0 chr6 40082354 40082657 -142332585 + AluSg SINE Alu 1 303 -7 229 292 323 0 chr6 40082721 40082817 -142332425 - MIR SINE MIR -133 129 3 7858 124 33 32 chr6 40083428 40084262 -142330980 + HSMAR2 DNA Mariner 13 845 -457 1686 150 37 17 chr6 40084262 40084556 -142330686 + AluJo SINE Alu 1 300 -12 7858 124 33 32 chr6 40084556 40084569 -142330673 + HSMAR2 DNA Mariner 845 856 -446 2266 103 0 10 chr6 40084569 40084870 -142330372 + AluSq SINE Alu 1 298 -15 7858 124 33 32 chr6 40084870 40085256 -142329986 + HSMAR2 DNA Mariner 856 1251 -51 2129 120 3 3 chr6 40085256 40085557 -142329685 - AluSx SINE Alu -11 301 1 7858 124 33 32 chr6 40085557 40085609 -142329633 + HSMAR2 DNA Mariner 1251 1301 -1 1909 158 10 0 chr6 40086923 40087226 -142328016 - AluJo SINE Alu -5 307 2 486 317 163 29 chr6 40087272 40087786 -142327456 - L2 LINE L2 -1022 2292 1710 1816 131 0 19 chr6 40089151 40089418 -142325824 - AluSg SINE Alu -48 262 1 1058 103 0 0 chr6 40089418 40089554 -142325688 - AluSq/x SINE Alu -177 136 1 270 136 0 0 chr6 40090323 40090367 -142324875 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 228 158 30 chr6 40091318 40091419 -142323823 + L2 LINE L2 3199 3312 -1 1861 89 13 80 chr6 40091949 40092310 -142322932 - AluSx SINE Alu 0 341 1 39 0 0 0 chr6 40093283 40093322 -142321920 + AT_rich Low_complexity Low_complexity 1 39 0 2279 106 7 3 chr6 40093345 40093647 -142321595 - AluSx SINE Alu -9 303 1 1455 177 104 24 chr6 40094429 40094717 -142320525 + AluJo SINE Alu 1 311 -1 1983 138 23 7 chr6 40094774 40095079 -142320163 - AluSx SINE Alu -2 310 1 692 148 0 57 chr6 40095136 40095258 -142319984 - FLAM_C SINE Alu 0 143 29 1571 152 16 8 chr6 40095295 40095545 -142319697 + AluJo SINE Alu 50 301 -11 28 48 0 0 chr6 40096675 40096717 -142318525 + AT_rich Low_complexity Low_complexity 1 42 0 750 147 0 0 chr6 40096729 40096831 -142318411 - FLAM_C SINE Alu -40 103 2 1400 246 147 17 chr6 40096921 40097506 -142317736 - L1MC4a LINE L1 -1788 6020 5360 2252 89 3 13 chr6 40097508 40097811 -142317431 + AluSg SINE Alu 1 300 -10 1977 136 17 14 chr6 40099623 40099918 -142315324 + AluSx SINE Alu 2 297 -15 693 124 35 0 chr6 40099918 40100031 -142315211 + L1MB3 LINE L1 6063 6179 -4 228 67 0 0 chr6 40100034 40100064 -142315178 + (T)n Simple_repeat Simple_repeat 1 30 0 2135 116 0 3 chr6 40100080 40100374 -142314868 + AluSx SINE Alu 1 293 -19 306 269 71 43 chr6 40100392 40100533 -142314709 + MIR SINE MIR 62 206 -56 449 192 32 72 chr6 40100548 40100673 -142314569 - L2 LINE L2 -2 3311 3192 311 244 33 12 chr6 40100874 40100965 -142314277 - MIR3 SINE MIR -53 155 63 2353 83 13 0 chr6 40101174 40101476 -142313766 - AluSx SINE Alu -6 306 1 1698 164 13 20 chr6 40101573 40101878 -142313364 + AluJb SINE Alu 1 303 -9 627 239 95 14 chr6 40102761 40102983 -142312259 + L1MC4 LINE L1 7779 8018 -24 2724 39 0 0 chr6 40103399 40103710 -142311532 + AluY SINE Alu 1 311 0 1531 55 0 0 chr6 40103710 40103891 -142311351 + AluY SINE Alu 131 311 0 1472 163 54 11 chr6 40103935 40104212 -142311030 + L1MB2 LINE L1 5620 5908 -275 710 153 47 82 chr6 40104217 40104350 -142310892 + L1MB2 LINE L1 5997 6124 -47 1569 159 13 68 chr6 40104350 40104658 -142310584 + AluJb SINE Alu 1 291 -21 710 153 47 82 chr6 40104658 40104694 -142310548 + L1MB2 LINE L1 6124 6160 -11 1716 178 0 4 chr6 40104708 40104989 -142310253 + AluJo SINE Alu 14 293 -19 761 130 65 0 chr6 40105091 40105199 -142310043 - FLAM_C SINE Alu -28 115 1 694 178 7 53 chr6 40105207 40105359 -142309883 - L1MB7 LINE L1 -2 6182 6038 1433 226 119 5 chr6 40105361 40105782 -142309460 + MLT1D LTR MaLR 37 505 0 815 165 0 0 chr6 40105903 40106024 -142309218 - FLAM_A SINE Alu -11 122 2 1420 151 11 151 chr6 40106518 40106728 -142308514 - AluJo SINE Alu 0 302 159 1419 156 80 33 chr6 40106728 40107004 -142308238 + AluJo SINE Alu 1 289 -23 1420 151 11 151 chr6 40107004 40107143 -142308099 - AluJo SINE Alu -143 159 2 814 178 0 0 chr6 40107166 40107284 -142307958 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr6 40107503 40107524 -142307718 + AT_rich Low_complexity Low_complexity 1 21 0 2339 64 3 17 chr6 40107833 40108131 -142307111 + AluSp SINE Alu 1 294 -19 1913 244 108 23 chr6 40108957 40109685 -142305557 + L1MC4 LINE L1 7113 7902 -140 1041 221 27 16 chr6 40109702 40109960 -142305282 + L1MB7 LINE L1 5519 5779 -387 921 139 15 0 chr6 40110233 40110370 -142304872 - FRAM SINE Alu -14 162 24 2216 103 3 3 chr6 40110397 40110687 -142304555 - AluSq SINE Alu -10 303 14 1848 158 7 17 chr6 40110687 40110984 -142304258 - AluJb SINE Alu -18 294 1 1381 213 59 42 chr6 40111290 40111472 -142303770 + L1MB7 LINE L1 5759 5936 -248 2379 88 0 3 chr6 40111472 40111768 -142303474 - AluSq SINE Alu -18 295 1 1381 213 59 42 chr6 40111768 40111989 -142303253 + L1MB7 LINE L1 5936 6169 -15 348 265 34 0 chr6 40111996 40112113 -142303129 + L1MC4 LINE L1 7922 8042 0 2106 114 36 16 chr6 40112124 40112430 -142302812 + AluSx SINE Alu 1 312 0 1530 152 83 0 chr6 40112700 40112964 -142302278 + AluJb SINE Alu 21 306 -6 585 240 77 16 chr6 40113297 40113480 -142301762 + HAL1 LINE L1 92 285 -2222 1824 140 54 4 chr6 40113665 40113944 -142301298 - AluSx SINE Alu -19 293 1 846 120 16 16 chr6 40113989 40114114 -142301128 + FLAM_C SINE Alu 1 125 -8 1376 226 98 34 chr6 40114118 40114761 -142300481 + HAL1 LINE L1 822 1695 -812 796 254 130 30 chr6 40114764 40115134 -142300108 + HAL1 LINE L1 1744 2150 -357 1090 178 199 0 chr6 40115142 40115373 -142299869 + AluJb SINE Alu 11 287 -25 258 32 0 0 chr6 40115383 40115414 -142299828 + (CA)n Simple_repeat Simple_repeat 1 31 0 312 27 0 0 chr6 40115455 40115492 -142299750 + (CA)n Simple_repeat Simple_repeat 1 37 0 339 236 162 68 chr6 40115558 40115592 -142299650 - MIR SINE MIR -21 241 212 2383 79 3 0 chr6 40115592 40115882 -142299360 - AluSx SINE Alu -21 291 1 339 236 162 68 chr6 40115882 40115995 -142299247 - MIR SINE MIR -50 212 80 408 251 169 26 chr6 40116038 40116269 -142298973 + HAL1 LINE L1 2244 2507 0 747 152 7 43 chr6 40116334 40116472 -142298770 + AluJb SINE Alu 1 133 -179 2093 134 0 6 chr6 40116554 40116868 -142298374 + AluSx SINE Alu 1 312 0 282 243 97 20 chr6 40117287 40117537 -142297705 + L1ME LINE L1 5265 5535 -629 1469 181 44 4 chr6 40117683 40117954 -142297288 + AluJb SINE Alu 1 282 -30 329 82 33 0 chr6 40117982 40118043 -142297199 + (CTAG)n Simple_repeat Simple_repeat 1 63 0 1019 153 0 0 chr6 40118068 40118225 -142297017 - AluJb SINE Alu -22 290 134 477 223 36 0 chr6 40118421 40118533 -142296709 + L1ME LINE L1 5546 5661 -460 22 0 0 0 chr6 40118550 40118572 -142296670 + AT_rich Low_complexity Low_complexity 1 22 0 2102 139 0 0 chr6 40118580 40118874 -142296368 + AluSx SINE Alu 1 294 -18 1851 178 7 0 chr6 40119222 40119525 -142295717 + AluJb SINE Alu 1 305 -7 2245 87 10 10 chr6 40119598 40119896 -142295346 - AluSx SINE Alu -14 298 1 875 99 0 57 chr6 40119904 40120045 -142295197 - L1PA15 LINE L1 -1 6164 6032 2292 53 60 27 chr6 40120121 40120422 -142294820 + AluY SINE Alu 1 311 0 1130 90 36 36 chr6 40120551 40120717 -142294525 + L1PA15 LINE L1 6000 6165 0 649 246 122 67 chr6 40120727 40121187 -142294055 + L1ME4a LINE L1 5414 5898 -223 1844 201 73 18 chr6 40121197 40121636 -142293606 + MLT1C LTR MaLR 5 467 0 525 290 110 10 chr6 40121644 40121844 -142293398 + MIR SINE MIR 23 242 -20 301 272 26 0 chr6 40121903 40122017 -142293225 + L1ME4a LINE L1 5984 6100 -21 1912 106 95 0 chr6 40122021 40122294 -142292948 - AluSx SINE Alu -13 299 1 30 27 0 0 chr6 40122294 40122331 -142292911 + AT_rich Low_complexity Low_complexity 1 37 0 555 126 39 19 chr6 40122369 40122472 -142292770 - MER50 LTR ERV1 -131 603 499 23 54 0 0 chr6 40122482 40122519 -142292723 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr6 40122604 40122650 -142292592 + AT_rich Low_complexity Low_complexity 1 46 0 868 128 7 28 chr6 40123039 40123180 -142292062 + FLAM_C SINE Alu 3 140 -3 2147 89 6 71 chr6 40123401 40123727 -142291515 - AluSg SINE Alu -5 305 1 1720 173 0 14 chr6 40123734 40123807 -142291435 - AluJo SINE Alu -26 286 214 2495 56 7 3 chr6 40123807 40124113 -142291129 - AluY SINE Alu -4 307 1 1720 173 0 14 chr6 40124113 40124328 -142290914 - AluJo SINE Alu -98 214 2 539 204 0 10 chr6 40124353 40124456 -142290786 + U13 snRNA snRNA 1 102 -2 727 207 0 0 chr6 40124486 40124602 -142290640 + AluJo SINE Alu 85 200 -112 313 279 0 0 chr6 40124677 40124763 -142290479 + L1MC4 LINE L1 6618 6703 -1339 1008 102 0 0 chr6 40124942 40125089 -142290153 + (TA)n Simple_repeat Simple_repeat 2 148 0 984 222 108 56 chr6 40125215 40125336 -142289906 + MER102b DNA MER1_type 1 114 -1314 1578 140 16 76 chr6 40125336 40125651 -142289591 + AluJo SINE Alu 1 296 -16 984 222 108 56 chr6 40125651 40125853 -142289389 + MER102b DNA MER1_type 114 341 0 226 260 41 41 chr6 40126051 40126124 -142289118 - L2 LINE L2 -3 3269 3197 23 0 0 0 chr6 40126865 40126888 -142288354 + AT_rich Low_complexity Low_complexity 1 23 0 2116 119 42 10 chr6 40126888 40127198 -142288044 - 7SLRNA srpRNA srpRNA 0 320 1 1499 173 25 85 chr6 40127416 40127774 -142287468 + L1M4 LINE L1 4945 5272 -874 2459 57 3 3 chr6 40127774 40128071 -142287171 + AluY SINE Alu 1 297 -14 1499 173 25 85 chr6 40128071 40128157 -142287085 + L1M4 LINE L1 5272 5362 -784 1803 32 55 0 chr6 40128242 40128459 -142286783 + AluY SINE Alu 1 229 -82 1939 190 18 87 chr6 40128794 40128969 -142286273 + L1MB5 LINE L1 5317 5502 -672 2143 108 3 10 chr6 40128969 40129264 -142285978 + AluSx SINE Alu 1 293 -19 191 61 30 0 chr6 40129264 40129297 -142285945 + (TA)n Simple_repeat Simple_repeat 2 35 0 1939 190 18 87 chr6 40129297 40129688 -142285554 + L1MB5 LINE L1 5501 5819 -355 1770 163 7 0 chr6 40129688 40129976 -142285266 + AluJb SINE Alu 11 300 -12 1939 190 18 87 chr6 40129976 40130042 -142285200 + L1MB5 LINE L1 5819 5888 -286 1994 124 0 0 chr6 40130086 40130351 -142284891 + AluSx SINE Alu 1 265 -47 931 112 0 0 chr6 40130408 40130533 -142284709 + AluSp/q SINE Alu 175 299 -14 1039 195 24 14 chr6 40130533 40130743 -142284499 + L1MB5 LINE L1 5931 6142 -32 960 195 18 12 chr6 40130743 40130907 -142284335 + FAM SINE Alu 1 165 -10 24 53 0 0 chr6 40130907 40130945 -142284297 + AT_rich Low_complexity Low_complexity 1 38 0 300 67 19 240 chr6 40131688 40131734 -142283508 + L1MB3 LINE L1 6101 6155 -28 2184 113 0 0 chr6 40131734 40132025 -142283217 + AluSx SINE Alu 1 291 -21 216 0 0 0 chr6 40132029 40132053 -142283189 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 300 67 19 240 chr6 40132053 40132105 -142283137 + L1MB3 LINE L1 6158 6181 -2 325 375 112 15 chr6 40132263 40132486 -142282756 + L3b LINE CR1 1279 1534 -49 2109 69 0 15 chr6 40132486 40132748 -142282494 - AluY SINE Alu -53 258 1 325 375 112 15 chr6 40132748 40132793 -142282449 + L3b LINE CR1 1534 1573 -10 2229 104 0 3 chr6 40133073 40133370 -142281872 + AluSx SINE Alu 1 296 -16 650 200 0 0 chr6 40133521 40133631 -142281611 - AluJb SINE Alu -9 303 194 724 164 0 0 chr6 40184215 40184337 -142230905 + FRAM SINE Alu 55 176 0 403 273 10 108 chr6 40185977 40186171 -142229071 - MIR3 SINE MIR -4 204 30 363 270 0 0 chr6 40186602 40186691 -142228551 + L1MC4 LINE L1 6615 6703 -1339 326 311 0 0 chr6 40186635 40186725 -142228517 - L1MC4 LINE L1 -1339 6703 6614 * 459 174 0 0 chr6 40186725 40186811 -142228431 + (TG)n Simple_repeat Simple_repeat 2 87 0 2483 62 0 0 chr6 40189750 40190038 -142225204 - AluY SINE Alu -23 288 1 839 173 268 0 chr6 40190066 40190234 -142225008 - MER58A DNA MER1_type -11 213 1 2258 138 28 0 chr6 40192082 40192438 -142222804 + MER47A DNA MER2_type 1 366 0 2245 106 0 13 chr6 40194259 40194562 -142220680 + AluSg SINE Alu 1 299 -11 1723 101 0 0 chr6 40198490 40198708 -142216534 - AluSx SINE Alu -94 218 1 2462 202 32 35 chr6 40198710 40199121 -142216121 - L1MDa LINE L1 -2958 3582 3172 1981 103 65 34 chr6 40199121 40199413 -142215829 - AluSx SINE Alu -11 301 1 2462 202 32 35 chr6 40199413 40199665 -142215577 - L1MDa LINE L1 -3368 3172 2921 854 203 30 25 chr6 40199665 40199862 -142215380 - MLT1B LTR MaLR 0 390 193 3242 64 44 33 chr6 40199974 40200293 -142214949 + LTR22A LTR ERVK 1 328 -130 2122 138 0 7 chr6 40200293 40200598 -142214644 + AluSg SINE Alu 1 303 -7 3242 64 44 33 chr6 40200598 40200731 -142214511 + LTR22A LTR ERVK 328 458 0 7799 113 53 7 chr6 40200731 40201889 -142213353 + HERVK22 LTR ERVK 1 1211 -5626 948 44 0 0 chr6 40201891 40202005 -142213237 - LTR22A LTR ERVK -341 117 4 579 160 110 0 chr6 40202008 40202108 -142213134 - MLT1B LTR MaLR -279 111 1 743 196 45 15 chr6 40202109 40202308 -142212934 - L1MDa LINE L1 -3616 2924 2720 806 144 0 144 chr6 40202308 40202495 -142212747 + FRAM SINE Alu 1 158 -18 4201 151 62 26 chr6 40202499 40202633 -142212609 - L1MDa LINE L1 -3817 2723 2595 1924 157 0 0 chr6 40202633 40202932 -142212310 - AluSx SINE Alu -13 299 1 4201 151 62 26 chr6 40202932 40203488 -142211754 - L1MDa LINE L1 -3945 2595 2061 2074 120 0 26 chr6 40203488 40203797 -142211445 + AluSx SINE Alu 3 303 -9 4201 151 62 26 chr6 40203797 40204125 -142211117 - L1MDa LINE L1 -4479 2061 1660 2434 121 59 48 chr6 40204125 40204294 -142210948 - MER65A LTR ERV1 0 445 279 1795 167 6 6 chr6 40204294 40204606 -142210636 + AluJo SINE Alu 1 312 0 2434 121 59 48 chr6 40204606 40204876 -142210366 - MER65A LTR ERV1 -166 279 1 4201 151 62 26 chr6 40204876 40204889 -142210353 - L1MDa LINE L1 -4880 1660 1649 1781 202 25 53 chr6 40204889 40205364 -142209878 - HUERS-P1 LTR ERV1 -13 4858 4397 1292 236 88 86 chr6 40205331 40205780 -142209462 - HUERS-P1 LTR ERV1 -779 4092 3645 * 2043 112 7 10 chr6 40205780 40205949 -142209293 - AluY SINE Alu -7 304 135 2115 91 14 0 chr6 40205949 40206245 -142208997 - AluSq SINE Alu -13 300 1 2043 112 7 10 chr6 40206245 40206380 -142208862 - AluY SINE Alu -176 135 1 1877 138 10 3 chr6 40206380 40206671 -142208571 - AluJo SINE Alu -19 293 1 1292 236 88 86 chr6 40206671 40206707 -142208535 - HUERS-P1 LTR ERV1 -1225 3646 3605 258 209 0 0 chr6 40206784 40206844 -142208398 - HUERS-P1 LTR ERV1 -728 5535 3325 2208 98 3 0 chr6 40206849 40207146 -142208096 + AluSq SINE Alu 1 298 -15 1968 209 121 82 chr6 40207186 40207490 -142207752 - MER65A-int LTR ERV1 -1237 5094 4803 2035 116 20 0 chr6 40207490 40207784 -142207458 + AluSx SINE Alu 3 302 -10 1968 209 121 82 chr6 40207784 40208573 -142206669 - MER65A-int LTR ERV1 -1528 4803 3959 8325 186 83 80 chr6 40208578 40208608 -142206634 - MER65A-int LTR ERV1 -2363 2508 2480 1831 181 0 7 chr6 40208608 40208918 -142206324 - AluJb SINE Alu -4 308 1 8325 186 83 80 chr6 40208918 40209344 -142205898 - MER65A-int LTR ERV1 -2391 2480 2057 745 185 15 0 chr6 40209344 40209474 -142205768 + FLAM_A SINE Alu 1 132 -1 8325 186 83 80 chr6 40209474 40210652 -142204590 - MER65A-int LTR ERV1 -2814 2057 1198 2005 107 0 0 chr6 40210652 40210922 -142204320 - AluSx SINE Alu -17 295 26 8325 186 83 80 chr6 40210922 40212113 -142203129 - MER65A-int LTR ERV1 -3673 1198 12 2162 127 45 45 chr6 40212120 40212546 -142202696 - MER65A LTR ERV1 0 445 20 1861 137 55 0 chr6 40212562 40212883 -142202359 - AluSx SINE Alu 0 337 1 2021 169 146 156 chr6 40212908 40213000 -142202242 - L1MDa LINE L1 -4869 1671 1580 1906 149 3 16 chr6 40213000 40213315 -142201927 - AluJo SINE Alu -1 311 1 2021 169 146 156 chr6 40213315 40213715 -142201527 - L1MDa LINE L1 -4960 1580 1178 1065 154 0 6 chr6 40213715 40213890 -142201352 - AluSg/x SINE Alu -11 301 128 2021 169 146 156 chr6 40213890 40214472 -142200770 - L1MDa LINE L1 -5362 1178 255 290 213 16 0 chr6 40214476 40214537 -142200705 - L1MDa LINE L1 -6451 89 28 263 349 22 44 chr6 40214615 40214930 -142200312 - L1M4 LINE L1 -947 5199 4892 217 385 60 0 chr6 40215675 40215792 -142199450 + MIR SINE MIR 23 146 -62 295 270 127 8 chr6 40222931 40223057 -142192185 - MIR SINE MIR -62 200 60 730 204 8 0 chr6 40223548 40223680 -142191562 + FLAM_A SINE Alu 1 133 0 374 304 89 0 chr6 40226110 40226268 -142188974 + L1MEd LINE L1 47 218 -5901 267 314 47 0 chr6 40227588 40227674 -142187568 + MIR SINE MIR 113 202 -60 469 301 80 24 chr6 40230290 40230503 -142184739 - MIR SINE MIR -25 237 13 467 312 91 5 chr6 40230705 40230926 -142184316 - L1MC4a LINE L1 -1879 5929 5690 2078 92 3 7 chr6 40231244 40231557 -142183685 + AluSx SINE Alu 1 312 0 359 222 65 37 chr6 40231559 40231667 -142183575 - MIR SINE MIR -103 159 49 2231 60 39 0 chr6 40231749 40232030 -142183212 - AluY SINE Alu -17 294 3 1449 176 8 19 chr6 40232109 40232370 -142182872 + AluJb SINE Alu 1 258 -54 206 216 0 0 chr6 40232390 40232427 -142182815 + (TG)n Simple_repeat Simple_repeat 2 38 0 2379 73 3 0 chr6 40232461 40232763 -142182479 + AluSg SINE Alu 1 303 -7 255 280 108 6 chr6 40232952 40233109 -142182133 - L1MC4a LINE L1 -1088 5058 4886 1524 153 24 4 chr6 40233609 40233857 -142181385 - AluJb SINE Alu -59 253 1 189 222 0 22 chr6 40234438 40234483 -142180759 - MIR SINE MIR -8 254 211 194 254 34 0 chr6 40234794 40234853 -142180389 - MIR SINE MIR -187 75 15 338 311 58 23 chr6 40235022 40235243 -142179999 - MIR SINE MIR -16 246 15 2448 137 20 0 chr6 40236525 40236918 -142178324 + MER4D LTR ERV1 1 401 -502 942 159 5 91 chr6 40236916 40237124 -142178118 - MER4E LTR ERV1 -132 647 458 * 180 0 0 0 chr6 40237327 40237347 -142177895 + (CA)n Simple_repeat Simple_repeat 1 20 0 777 187 10 66 chr6 40237355 40237390 -142177852 - MER4D LTR ERV1 -327 576 541 2173 95 23 0 chr6 40237390 40237694 -142177548 + AluY SINE Alu 1 311 0 777 187 10 66 chr6 40237694 40237856 -142177386 - MER4D LTR ERV1 -362 541 390 1383 169 33 72 chr6 40238021 40238126 -142177116 + AluJb SINE Alu 1 109 -203 2167 103 10 3 chr6 40238126 40238427 -142176815 - AluSx SINE Alu -7 305 3 1383 169 33 72 chr6 40238427 40238628 -142176614 + AluJb SINE Alu 109 295 -17 376 294 91 21 chr6 40238628 40238815 -142176427 - MIR SINE MIR -15 247 48 231 155 17 121 chr6 40239943 40239980 -142175262 - L1ME4a LINE L1 -19 6102 6063 2112 108 0 13 chr6 40239980 40240287 -142174955 + AluSx SINE Alu 1 303 -9 231 155 17 121 chr6 40240287 40240365 -142174877 - L1ME4a LINE L1 -58 6063 5999 278 245 175 11 chr6 40242063 40242179 -142173063 - MIR SINE MIR -71 137 3 288 318 73 13 chr6 40244589 40244740 -142170502 - L1ME4a LINE L1 -198 5923 5764 644 298 108 19 chr6 40245211 40245469 -142169773 + L3 LINE CR1 1282 1562 -15 663 284 77 5 chr6 40246903 40247125 -142168117 + MIR SINE MIR 4 241 -21 205 250 0 44 chr6 40249409 40249477 -142165765 + GA-rich Low_complexity Low_complexity 3 67 0 208 139 28 0 chr6 40249989 40250025 -142165217 + C-rich Low_complexity Low_complexity 4 40 0 2345 77 0 0 chr6 40251586 40251897 -142163345 + AluY SINE Alu 1 311 0 2178 109 0 0 chr6 40252546 40252840 -142162402 + AluSg SINE Alu 1 294 -16 426 263 97 11 chr6 40252848 40253023 -142162219 - MIR SINE MIR -64 198 9 459 286 19 0 chr6 40254444 40254549 -142160693 + L2 LINE L2 3189 3295 -18 1214 160 109 61 chr6 40255538 40255698 -142159544 - AluJo SINE Alu -4 308 157 1866 158 0 10 chr6 40255698 40256008 -142159234 - AluJb SINE Alu -5 307 1 1214 160 109 61 chr6 40256008 40256140 -142159102 - AluJo SINE Alu -155 157 2 317 281 61 9 chr6 40256162 40256276 -142158966 + MIR SINE MIR 137 256 -6 294 158 167 35 chr6 40256361 40256475 -142158767 - L1MC4a LINE L1 -1638 6170 6042 968 153 0 0 chr6 40256952 40257109 -142158133 - FRAM SINE Alu -2 174 18 211 143 29 0 chr6 40259102 40259137 -142156105 - MIR SINE MIR -110 152 117 182 375 54 0 chr6 40260448 40260504 -142154738 + MIR SINE MIR 38 96 -112 873 195 74 25 chr6 40261147 40261405 -142153837 + L1ME2 LINE L1 5879 6152 -12 370 219 27 128 chr6 40261452 40261671 -142153571 + L1MC4 LINE L1 7829 8025 -17 231 220 150 20 chr6 40262250 40262350 -142152892 - MER110 LTR ERV1 -77 414 302 203 282 68 29 chr6 40262401 40262504 -142152738 - MIR SINE MIR -79 183 77 515 313 44 12 chr6 40262632 40262817 -142152425 + MIR3 SINE MIR 3 191 -64 252 212 35 59 chr6 40263013 40263098 -142152144 - Tigger3(Golem) DNA MER2_type -1361 1668 1586 289 305 65 39 chr6 40263737 40263891 -142151351 + MIR SINE MIR 21 178 -84 344 288 20 0 chr6 40267834 40267951 -142147291 - MIR3 SINE MIR -25 183 63 1462 221 100 6 chr6 40268046 40268386 -142146856 + MLT1A2 LTR MaLR 3 374 0 2334 76 7 0 chr6 40268677 40268981 -142146261 + AluSp SINE Alu 1 306 -7 1309 184 31 59 chr6 40268981 40269302 -142145940 + L1MD2 LINE L1 6039 6350 -9 1858 148 3 22 chr6 40269388 40269706 -142145536 + AluJo SINE Alu 1 312 0 1319 206 140 43 chr6 40270410 40270759 -142144483 + LTR16C LTR ERVL 69 451 -40 843 204 33 6 chr6 40271209 40271390 -142143852 - MER5A DNA MER1_type -3 186 1 189 349 0 15 chr6 40271619 40271685 -142143557 - L2 LINE L2 -2 3311 3247 261 287 148 10 chr6 40271707 40271808 -142143434 + MIR3 SINE MIR 84 198 -10 303 314 29 20 chr6 40272927 40273029 -142142213 + L2 LINE L2 3160 3262 -10 213 220 85 17 chr6 40274137 40274196 -142141046 + MIR SINE MIR 194 256 -6 474 274 119 28 chr6 40275934 40276186 -142139056 + L2 LINE L2 3037 3311 -2 445 300 152 40 chr6 40277266 40277589 -142137653 + L3 LINE CR1 1122 1480 -97 219 322 0 0 chr6 40277831 40277890 -142137352 + MIR3 SINE MIR 141 199 -9 268 289 8 71 chr6 40278214 40278348 -142136894 + MIR3 SINE MIR 52 187 -48 218 216 20 0 chr6 40278440 40278491 -142136751 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 370 309 44 68 chr6 40278526 40278671 -142136571 + L1MC4a LINE L1 4969 5107 -1039 2143 97 7 3 chr6 40278671 40278971 -142136271 + AluSx SINE Alu 1 301 -11 370 309 44 68 chr6 40278971 40279074 -142136168 + L1MC4a LINE L1 5107 5211 -935 435 270 221 37 chr6 40279088 40279662 -142135580 + L1MC4a LINE L1 5254 5933 -1875 767 207 49 81 chr6 40281693 40281978 -142133264 + L2 LINE L2 3031 3306 -7 288 268 0 45 chr6 40282607 40282719 -142132523 + GA-rich Low_complexity Low_complexity 2 108 0 186 43 0 0 chr6 40282994 40283046 -142132196 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 43 0 0 chr6 40283046 40283069 -142132173 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr6 40284246 40284281 -142130961 + AT_rich Low_complexity Low_complexity 1 35 0 25 90 0 0 chr6 40284338 40284405 -142130837 + AT_rich Low_complexity Low_complexity 1 67 0 456 233 113 1 chr6 40285000 40285242 -142130000 - LTR33 LTR ERVL 0 521 228 22 0 0 0 chr6 40285607 40285629 -142129613 + AT_rich Low_complexity Low_complexity 1 22 0 2098 120 0 0 chr6 40286316 40286617 -142128625 - AluSx SINE Alu -11 301 1 278 362 91 9 chr6 40286698 40286919 -142128323 - MIR SINE MIR -2 260 22 1277 194 129 19 chr6 40287851 40288161 -142127081 + MER2 DNA MER2_type 2 345 0 2338 83 50 12 chr6 40289440 40289779 -142125463 + L1PA16 LINE L1 5806 6157 -9 198 0 0 0 chr6 40291363 40291385 -142123857 + (A)n Simple_repeat Simple_repeat 1 22 0 189 171 0 0 chr6 40291521 40291556 -142123686 + T-rich Low_complexity Low_complexity 1 35 0 413 310 76 6 chr6 40292085 40292243 -142122999 + MIR3 SINE MIR 9 177 -31 1958 130 3 7 chr6 40292805 40293105 -142122137 - AluSx SINE Alu -13 299 1 346 231 55 22 chr6 40294304 40294395 -142120847 + MIR SINE MIR 169 262 0 1964 158 0 0 chr6 40294726 40295037 -142120205 + AluJo SINE Alu 1 311 -1 281 314 0 39 chr6 40295126 40295228 -142120014 - L2 LINE L2 -224 3048 2951 646 153 0 0 chr6 40295231 40295329 -142119913 + AluJ/FLAM SINE Alu 2 99 -213 201 308 19 0 chr6 40296061 40296113 -142119129 + MIR SINE MIR 23 75 -133 390 326 188 18 chr6 40296279 40296497 -142118745 + MIR SINE MIR 7 261 -1 597 233 121 45 chr6 40297143 40297366 -142117876 - MIR SINE MIR -3 259 20 1086 214 285 6 chr6 40297680 40298045 -142117197 + MLT1J LTR MaLR 23 489 -22 25 0 0 0 chr6 40298125 40298150 -142117092 + AT_rich Low_complexity Low_complexity 1 25 0 907 144 118 43 chr6 40298150 40298337 -142116905 - AluJo SINE Alu -25 287 87 1849 166 0 6 chr6 40298387 40298701 -142116541 - AluSx SINE Alu 0 312 1 616 337 74 55 chr6 40298712 40299539 -142115703 + L2 LINE L2 2201 3090 -182 1209 199 36 25 chr6 40299819 40300100 -142115142 + AluJo SINE Alu 7 290 -22 381 281 0 0 chr6 40300226 40300308 -142114934 + HAL1 LINE L1 1 82 -2425 364 192 208 8 chr6 40300324 40300444 -142114798 + HAL1 LINE L1 192 335 -2172 528 247 13 46 chr6 40301042 40301224 -142114018 - MER20B DNA MER1_type -17 202 27 962 114 47 0 chr6 40301308 40301457 -142113785 - BC200 scRNA scRNA -43 157 2 25 0 0 0 chr6 40301474 40301499 -142113743 + AT_rich Low_complexity Low_complexity 1 25 0 1099 103 63 0 chr6 40301499 40301536 -142113706 - L1MA2 LINE L1 0 6304 6271 2348 80 0 3 chr6 40301536 40301848 -142113394 - AluY SINE Alu 0 311 1 1099 103 63 0 chr6 40301848 40301985 -142113257 - L1MA2 LINE L1 -33 6271 6119 1385 127 5 32 chr6 40302029 40302113 -142113129 - AluSx SINE Alu -97 215 130 2379 63 0 7 chr6 40302113 40302414 -142112828 - AluSc SINE Alu -10 299 1 1385 127 5 32 chr6 40302414 40302550 -142112692 - AluSx SINE Alu -182 130 1 278 328 8 0 chr6 40302805 40302924 -142112318 - L1M4 LINE L1 -3095 3051 2932 260 346 26 6 chr6 40303112 40303268 -142111974 + L1ME LINE L1 5567 5725 -396 826 146 32 0 chr6 40303561 40303684 -142111558 - FLAM_C SINE Alu -15 128 2 35 33 0 17 chr6 40303817 40303853 -142111389 + AT_rich Low_complexity Low_complexity 1 37 -22 885 134 0 8 chr6 40303853 40303980 -142111262 - FLAM_C SINE Alu -7 126 1 35 33 0 17 chr6 40303980 40304003 -142111239 + AT_rich Low_complexity Low_complexity 37 59 0 2624 130 78 66 chr6 40304013 40304497 -142110745 - LTR2B LTR ERV1 0 490 1 9059 88 5 6 chr6 40304497 40306490 -142108752 - Harlequin LTR ERV1 0 6896 4251 5022 47 19 0 chr6 40306481 40307073 -142108169 - Harlequin LTR ERV1 -2942 3954 3352 * 7437 48 17 10 chr6 40307072 40308075 -142107167 - Harlequin LTR ERV1 -4322 2574 1565 * 7920 55 44 14 chr6 40308056 40309107 -142106135 - Harlequin LTR ERV1 -5552 1344 263 2773 111 5 2 chr6 40309087 40309485 -142105757 - Harlequin LTR ERV1 -6497 399 1 * 2622 124 95 63 chr6 40309485 40309960 -142105282 - LTR2B LTR ERV1 0 490 1 2211 117 3 0 chr6 40310825 40311125 -142104117 + AluSx SINE Alu 1 301 -11 504 154 77 0 chr6 40311137 40311241 -142104001 + L1ME LINE L1 4527 4638 -1508 2051 196 71 50 chr6 40311273 40311550 -142103692 + L1ME LINE L1 4623 4893 -1273 2376 88 0 0 chr6 40311550 40311844 -142103398 + AluSc SINE Alu 1 294 -15 2051 196 71 50 chr6 40311844 40312571 -142102671 + L1ME LINE L1 4893 5815 -351 2062 142 3 0 chr6 40312972 40313274 -142101968 + AluSg SINE Alu 1 303 -7 428 331 128 53 chr6 40313415 40313774 -142101468 + L3 LINE CR1 1148 1533 -44 2082 216 80 55 chr6 40313865 40314425 -142100817 + L1MC4 LINE L1 7346 7926 -116 282 56 0 0 chr6 40314425 40314461 -142100781 + (CA)n Simple_repeat Simple_repeat 1 36 0 2082 216 80 55 chr6 40314461 40314549 -142100693 + L1MC4 LINE L1 7926 8010 -32 184 111 67 67 chr6 40314580 40314625 -142100617 - MER5B DNA MER1_type -124 54 10 * 189 315 55 14 chr6 40314614 40314687 -142100555 + L3 LINE CR1 1495 1570 -7 2309 111 3 0 chr6 40315065 40315372 -142099870 - AluSx SINE Alu -4 308 1 1471 151 50 25 chr6 40315464 40315743 -142099499 - AluJo SINE Alu -20 292 7 2140 100 21 0 chr6 40315751 40316032 -142099210 - AluSx SINE Alu 0 312 26 646 278 76 5 chr6 40316428 40316626 -142098616 - MIR SINE MIR -26 236 25 333 158 18 0 chr6 40316741 40316798 -142098444 + Alu SINE Alu 242 299 -3 566 59 0 119 chr6 40316804 40317006 -142098236 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 * 724 196 17 0 chr6 40316967 40317140 -142098102 + G-rich Low_complexity Low_complexity 3 178 0 612 143 54 0 chr6 40317161 40317329 -142097913 + GA-rich Low_complexity Low_complexity 4 180 0 350 194 42 0 chr6 40317329 40317401 -142097841 + G-rich Low_complexity Low_complexity 4 78 0 1782 142 3 64 chr6 40320211 40320522 -142094720 - AluJo SINE Alu -20 292 1 249 310 0 0 chr6 40320635 40320693 -142094549 + MER2 DNA MER2_type 285 342 -3 429 132 0 15 chr6 40320696 40320764 -142094478 - MER2 DNA MER2_type -247 98 32 2108 116 0 3 chr6 40321674 40321983 -142093259 + AluSx SINE Alu 1 308 0 2572 75 0 0 chr6 40322491 40322799 -142092443 + AluSq SINE Alu 1 308 -5 1709 154 19 45 chr6 40323511 40323823 -142091419 - AluJo SINE Alu -8 304 1 414 323 121 31 chr6 40324675 40325186 -142090056 - L1M4 LINE L1 -1979 4167 3567 1959 152 14 0 chr6 40325186 40325476 -142089766 + AluSx SINE Alu 1 294 -18 414 323 121 31 chr6 40325476 40325543 -142089699 - L1M4 LINE L1 -2579 3567 3507 2160 134 3 0 chr6 40325578 40325884 -142089358 + AluSx SINE Alu 1 307 -5 769 257 64 75 chr6 40326306 40326738 -142088504 + L1MC4a LINE L1 5463 5816 -305 5869 129 21 31 chr6 40327108 40328067 -142087175 + L1MA8 LINE L1 5157 6125 -166 2336 113 0 0 chr6 40328067 40328377 -142086865 + AluSx SINE Alu 1 310 -2 5869 129 21 31 chr6 40328377 40328404 -142086838 + L1MA8 LINE L1 6125 6151 -140 2225 81 0 14 chr6 40328404 40328723 -142086519 - AluSc SINE Alu 0 315 1 5869 129 21 31 chr6 40328723 40328878 -142086364 + L1MA8 LINE L1 6151 6290 -1 340 350 16 0 chr6 40330247 40330370 -142084872 + MIR SINE MIR 17 141 -121 781 244 74 49 chr6 40330793 40331158 -142084084 - L2 LINE L2 -52 3261 2888 284 286 138 66 chr6 40332260 40332456 -142082786 - L2 LINE L2 -90 3182 2973 194 333 83 10 chr6 40332521 40332617 -142082625 - L2 LINE L2 -432 2882 2780 229 315 92 0 chr6 40333018 40333148 -142082094 - L2 LINE L2 -906 2408 2267 279 300 100 61 chr6 40333238 40333420 -142081822 - MIR SINE MIR -56 206 20 3642 248 168 45 chr6 40334002 40335792 -142079450 + HAL1 LINE L1 14 2109 -398 2426 99 0 0 chr6 40335792 40336104 -142079138 + AluSx SINE Alu 1 312 0 3642 248 168 45 chr6 40336104 40336441 -142078801 + HAL1 LINE L1 2109 2403 -104 181 83 56 0 chr6 40336843 40336879 -142078363 + (CA)n Simple_repeat Simple_repeat 1 38 0 223 200 53 80 chr6 40337427 40337502 -142077740 + L2 LINE L2 3161 3233 -39 242 298 73 121 chr6 40337800 40338115 -142077127 + L2 LINE L2 2948 3247 -25 2316 106 0 3 chr6 40338218 40338521 -142076721 + AluSx SINE Alu 1 302 -10 373 302 187 11 chr6 40338958 40339140 -142076102 - MIR SINE MIR 0 262 49 204 143 43 43 chr6 40339924 40339994 -142075248 + (TATAA)n Simple_repeat Simple_repeat 1 70 0 1698 154 72 77 chr6 40340272 40340700 -142074542 + MER31B LTR ERV1 1 426 -40 2448 83 0 6 chr6 40340700 40341014 -142074228 + AluSx SINE Alu 1 312 0 577 182 20 20 chr6 40341034 40341133 -142074109 - FRAM SINE Alu -15 161 63 244 75 0 25 chr6 40341139 40341179 -142074063 + MER31B LTR ERV1 428 466 0 284 215 229 8 chr6 40342178 40342310 -142072932 - MIR3 SINE MIR -43 165 4 859 80 0 0 chr6 40343081 40343194 -142072048 + L1PA5 LINE L1 6040 6152 -2 2285 115 0 3 chr6 40343782 40344086 -142071156 + AluSx SINE Alu 1 303 -9 233 248 60 60 chr6 40344211 40344328 -142070914 - MIR3 SINE MIR -89 119 3 278 164 0 18 chr6 40344567 40344622 -142070620 + L1MC2 LINE L1 3198 3251 -2895 2251 122 0 0 chr6 40344628 40344923 -142070319 - AluSx SINE Alu -17 295 1 2317 119 0 0 chr6 40344948 40345260 -142069982 + AluSx SINE Alu 1 312 0 755 247 18 14 chr6 40345280 40345503 -142069739 + L1MC2 LINE L1 3264 3487 -2659 310 175 175 38 chr6 40345516 40345596 -142069646 - Tigger1 DNA MER2_type -2325 93 3 5475 149 65 48 chr6 40345598 40345851 -142069391 + L1MC2 LINE L1 4744 4991 -1353 1937 154 3 10 chr6 40345851 40346156 -142069086 + AluJb SINE Alu 1 303 -9 5475 149 65 48 chr6 40346156 40346422 -142068820 + L1MC2 LINE L1 4991 5251 -1093 1134 227 71 9 chr6 40346422 40346647 -142068595 - MER8 DNA MER2_type 0 239 1 5475 149 65 48 chr6 40346647 40346941 -142068301 + L1MC2 LINE L1 5251 5538 -806 2290 74 7 17 chr6 40346941 40347237 -142068005 - AluY SINE Alu -18 293 1 5475 149 65 48 chr6 40347237 40347974 -142067268 + L1MC2 LINE L1 5538 6315 -29 1311 223 72 0 chr6 40347974 40348265 -142066977 + AluJo SINE Alu 1 312 0 399 163 59 22 chr6 40348280 40348415 -142066827 + GA-rich Low_complexity Low_complexity 1 140 0 275 221 154 29 chr6 40349499 40349635 -142065607 + L1M4 LINE L1 3806 3958 -2188 937 143 0 0 chr6 40349661 40349794 -142065448 + FLAM_C SINE Alu 1 133 -10 2283 81 3 0 chr6 40349948 40350232 -142065010 + AluSg SINE Alu 6 290 -20 29 0 0 25 chr6 40350292 40350306 -142064936 + AT_rich Low_complexity Low_complexity 1 14 -25 2206 92 11 0 chr6 40350306 40350588 -142064654 - AluSq SINE Alu -16 297 13 29 0 0 25 chr6 40350588 40350613 -142064629 + AT_rich Low_complexity Low_complexity 14 39 0 1060 175 0 24 chr6 40351496 40351662 -142063580 - FRAM SINE Alu -4 162 1 2256 103 0 0 chr6 40352221 40352521 -142062721 - AluSg SINE Alu -10 300 1 573 269 36 0 chr6 40353725 40353892 -142061350 - MIR SINE MIR -49 213 41 25 0 0 0 chr6 40353892 40353917 -142061325 + AT_rich Low_complexity Low_complexity 1 25 0 797 154 8 0 chr6 40353917 40354040 -142061202 - FLAM_C SINE Alu -9 124 1 211 370 111 7 chr6 40354209 40354344 -142060898 + L2 LINE L2 3123 3271 -1 2931 0 0 0 chr6 40355142 40355448 -142059794 - AluYa5 SINE Alu -5 306 1 1816 170 0 0 chr6 40355842 40356131 -142059111 + AluJo SINE Alu 1 289 -23 2328 67 0 3 chr6 40356781 40357092 -142058150 + AluY SINE Alu 1 310 0 2127 73 4 0 chr6 40357595 40357856 -142057386 + AluSp SINE Alu 37 298 -15 2536 179 77 0 chr6 40358033 40358540 -142056702 + L1M4 LINE L1 5277 5822 -356 2000 119 0 0 chr6 40358545 40358798 -142056444 + AluSx SINE Alu 2 254 -58 1474 126 36 5 chr6 40358803 40359058 -142056184 + AluSx SINE Alu 53 314 0 2363 103 0 3 chr6 40359781 40360083 -142055159 + AluSx SINE Alu 1 301 -11 1986 95 4 8 chr6 40360086 40360349 -142054893 + AluSp SINE Alu 37 298 -15 270 322 35 41 chr6 40360653 40360824 -142054418 - MIR SINE MIR -70 192 23 506 255 7 0 chr6 40361352 40361505 -142053737 + GA-rich Low_complexity Low_complexity 2 155 0 310 209 12 35 chr6 40362224 40362310 -142052932 - MIR SINE MIR -133 129 46 539 278 65 9 chr6 40362453 40362669 -142052573 + MIR SINE MIR 8 235 -27 606 237 182 0 chr6 40364100 40364298 -142050944 - MIR SINE MIR -17 245 12 900 158 44 92 chr6 40365259 40365487 -142049755 - MER20 DNA MER1_type -1 218 2 928 164 6 6 chr6 40366303 40366462 -142048780 + AluJb SINE Alu 131 289 -23 342 0 0 0 chr6 40367100 40367138 -142048104 + (CA)n Simple_repeat Simple_repeat 2 39 0 545 269 86 0 chr6 40367568 40367765 -142047477 + MIR SINE MIR 47 260 -2 2235 100 7 3 chr6 40368238 40368538 -142046704 + AluSc SINE Alu 1 301 -8 617 274 133 0 chr6 40368834 40369060 -142046182 + MIR SINE MIR 1 256 -6 516 179 85 0 chr6 40369110 40369216 -142046026 + FLAM_A SINE Alu 23 137 -5 1668 153 29 22 chr6 40369233 40369507 -142045735 + AluJo SINE Alu 1 276 -36 1939 158 0 3 chr6 40370727 40371025 -142044217 + AluJo SINE Alu 16 312 0 865 224 79 0 chr6 40371406 40371634 -142043608 - MIR SINE MIR -5 257 12 2307 97 3 7 chr6 40372078 40372386 -142042856 + AluSx SINE Alu 1 307 -5 755 263 95 4 chr6 40372749 40372981 -142042261 - MIR SINE MIR -1 261 9 2307 121 0 0 chr6 40374936 40375242 -142040000 + AluSx SINE Alu 1 306 -6 1203 181 10 0 chr6 40375599 40375798 -142039444 + AluJo SINE Alu 18 218 -94 285 278 45 38 chr6 40375940 40376073 -142039169 - L2 LINE L2 0 3313 3180 214 218 109 0 chr6 40376188 40376243 -142038999 - MIR SINE MIR -114 148 88 27 73 0 0 chr6 40376848 40376903 -142038339 + AT_rich Low_complexity Low_complexity 1 55 0 2351 81 0 14 chr6 40377008 40377304 -142037938 + AluY SINE Alu 1 292 -19 1688 147 85 0 chr6 40377314 40377609 -142037633 + AluSx SINE Alu 1 317 0 1523 194 73 0 chr6 40377622 40377895 -142037347 + AluJb SINE Alu 1 293 -19 267 290 0 0 chr6 40378130 40378199 -142037043 + L2 LINE L2 3190 3258 -14 180 0 0 0 chr6 40380312 40380332 -142034910 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2266 122 3 3 chr6 40380339 40380650 -142034592 - AluSx SINE Alu -1 311 1 1694 172 14 14 chr6 40380656 40380947 -142034295 - AluJo SINE Alu -21 291 1 194 269 102 9 chr6 40381547 40381655 -142033587 + L2 LINE L2 3137 3254 -18 651 262 79 5 chr6 40382088 40382290 -142032952 + L1ME3 LINE L1 5939 6155 -7 769 183 8 0 chr6 40383187 40383318 -142031924 - FLAM_C SINE Alu 0 133 2 597 275 84 0 chr6 40383322 40383500 -142031742 - MIR SINE MIR -41 221 29 2733 156 63 49 chr6 40383527 40383642 -142031600 - L1MD3 LINE L1 -11 7984 7872 1208 244 0 0 chr6 40383642 40383880 -142031362 - MER8 DNA MER2_type -1 238 1 2733 156 63 49 chr6 40383880 40384317 -142030925 - L1MD3 LINE L1 -123 7872 7424 543 272 14 14 chr6 40384317 40384464 -142030778 - MLT1F1 LTR MaLR -420 147 1 1213 195 61 0 chr6 40384466 40384712 -142030530 - L1MD3 LINE L1 -719 7276 7016 196 224 0 0 chr6 40384918 40384967 -142030275 + MIR SINE MIR 199 247 -15 283 289 0 22 chr6 40385073 40385163 -142030079 - MIR SINE MIR -118 144 57 420 238 60 46 chr6 40385596 40385747 -142029495 + MIR SINE MIR 98 250 -12 2040 147 13 0 chr6 40386118 40386424 -142028818 + AluSx SINE Alu 1 310 -2 2233 115 0 0 chr6 40386481 40386777 -142028465 - AluSc SINE Alu -13 296 1 21 0 0 0 chr6 40386778 40386799 -142028443 + AT_rich Low_complexity Low_complexity 1 21 0 1887 175 24 6 chr6 40386839 40387177 -142028065 - MER2 DNA MER2_type 0 344 1 1102 144 70 144 chr6 40387261 40387414 -142027828 + AluJo SINE Alu 23 145 -167 2080 93 3 71 chr6 40387414 40387737 -142027505 + AluSc SINE Alu 1 301 -8 1102 144 70 144 chr6 40387737 40387881 -142027361 + AluJo SINE Alu 145 298 -14 1197 83 45 0 chr6 40388409 40388565 -142026677 - AluSg/x SINE Alu -13 299 137 2321 97 6 0 chr6 40388681 40388992 -142026250 + AluSp SINE Alu 1 313 0 1916 182 0 0 chr6 40389420 40389722 -142025520 + AluJo SINE Alu 3 304 -8 727 175 4 158 chr6 40390468 40390638 -142024604 + MIR SINE MIR 9 131 -131 790 178 0 0 chr6 40390638 40390756 -142024486 + FLAM_C SINE Alu 1 118 -15 727 175 4 158 chr6 40390756 40390831 -142024411 + MIR SINE MIR 131 216 -46 585 220 42 42 chr6 40391014 40391205 -142024037 + MIR SINE MIR 60 250 -12 268 164 0 55 chr6 40391651 40391706 -142023536 + FLAM SINE Alu 76 127 -6 844 138 0 15 chr6 40391734 40391864 -142023378 - FLAM_C SINE Alu -5 128 1 686 258 131 16 chr6 40392241 40392629 -142022613 + L1ME4a LINE L1 5659 6091 -30 899 167 118 9 chr6 40392634 40392913 -142022329 + MER46C DNA MER2_type 2 338 0 418 298 151 5 chr6 40393129 40393334 -142021908 - MIR SINE MIR -15 247 13 758 135 0 117 chr6 40394132 40394242 -142021000 - AluJb SINE Alu -84 228 141 2338 99 3 3 chr6 40394242 40394546 -142020696 - AluSq SINE Alu -9 304 1 758 135 0 117 chr6 40394546 40394598 -142020644 - AluJb SINE Alu -171 141 85 2048 142 3 13 chr6 40394856 40395166 -142020076 + AluSx SINE Alu 1 307 -5 1866 116 95 0 chr6 40395166 40395451 -142019791 + AluSx SINE Alu 1 312 0 645 160 0 113 chr6 40395881 40396031 -142019211 + FLAM_A SINE Alu 1 133 0 1980 141 0 41 chr6 40396539 40396859 -142018383 - AluJb SINE Alu -5 307 1 883 138 0 0 chr6 40397792 40397922 -142017320 + FLAM_C SINE Alu 1 130 -3 532 286 111 0 chr6 40398005 40398222 -142017020 - MIR SINE MIR -17 245 5 2247 95 0 3 chr6 40399302 40399598 -142015644 + AluSc SINE Alu 1 295 -14 273 292 0 0 chr6 40399804 40399876 -142015366 - L2 LINE L2 0 3272 3201 244 252 118 16 chr6 40399995 40400122 -142015120 + L2 LINE L2 2919 3058 -214 2414 70 7 0 chr6 40400839 40401139 -142014103 + AluSx SINE Alu 1 302 -10 378 100 0 0 chr6 40401667 40401727 -142013515 + (CCG)n Simple_repeat Simple_repeat 2 61 0 23 0 0 0 chr6 40401998 40402021 -142013221 + GC_rich Low_complexity Low_complexity 1 23 0 204 222 178 33 chr6 40402602 40402692 -142012550 + L2 LINE L2 3211 3313 0 2138 69 0 4 chr6 40403944 40404205 -142011037 - AluSg SINE Alu -48 262 3 2371 95 16 0 chr6 40404465 40404771 -142010471 + AluSq SINE Alu 3 313 0 629 81 0 20 chr6 40404819 40404918 -142010324 - AluY SINE Alu -1 310 214 1425 148 54 67 chr6 40404928 40405076 -142010166 - AluJo SINE Alu -18 294 146 195 42 0 0 chr6 40405076 40405100 -142010142 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2154 90 0 28 chr6 40405100 40405389 -142009853 - AluSg SINE Alu -29 281 1 1425 148 54 67 chr6 40405389 40405537 -142009705 - AluJo SINE Alu -164 148 1 284 293 68 23 chr6 40405863 40405996 -142009246 + L1M4 LINE L1 2950 3088 -3058 445 222 208 0 chr6 40405997 40406141 -142009101 + FRAM SINE Alu 1 174 -2 21 71 0 0 chr6 40406202 40406244 -142008998 + AT_rich Low_complexity Low_complexity 1 42 0 5903 78 25 27 chr6 40406636 40407484 -142007758 - L1PA12 LINE L1 -15 6153 5308 809 128 17 8 chr6 40408424 40408541 -142006701 + AluJb SINE Alu 1 118 -194 180 0 0 0 chr6 40408541 40408561 -142006681 + (TTATG)n Simple_repeat Simple_repeat 4 23 0 2373 108 0 0 chr6 40408561 40408867 -142006375 - AluSx SINE Alu -6 306 1 2198 106 7 0 chr6 40408878 40409171 -142006071 - AluSq SINE Alu -18 295 1 2294 112 0 3 chr6 40409231 40409543 -142005699 + AluSx SINE Alu 1 311 -1 417 170 138 0 chr6 40409746 40409840 -142005402 - L1ME4a LINE L1 -4 6117 6011 873 246 117 21 chr6 40409893 40410394 -142004848 - L1ME4a LINE L1 -237 5884 5318 453 73 0 0 chr6 40411749 40411804 -142003438 - Alu SINE Alu -24 288 234 31 0 0 0 chr6 40411804 40411835 -142003407 + AT_rich Low_complexity Low_complexity 1 31 0 822 150 0 0 chr6 40411882 40411995 -142003247 - AluJo/FRAM SINE Alu -66 246 134 1730 174 10 16 chr6 40411995 40412306 -142002936 - AluJo SINE Alu -3 309 1 1504 171 41 8 chr6 40412957 40413232 -142002010 - AluJo SINE Alu 0 312 30 2267 109 0 0 chr6 40416680 40416982 -141998260 - AluSc SINE Alu -7 302 1 207 309 25 25 chr6 40417065 40417146 -141998096 - L3 LINE CR1 -913 664 584 635 95 0 0 chr6 40417302 40417386 -141997856 - HY3 scRNA scRNA -5 96 13 215 345 27 9 chr6 40419785 40419895 -141995347 - MIR SINE MIR -58 150 39 598 269 124 0 chr6 40420412 40420613 -141994629 - MIR SINE MIR -35 227 2 654 255 44 81 chr6 40420828 40421126 -141994116 + L1ME3A LINE L1 5493 5779 -391 639 152 159 0 chr6 40421127 40421272 -141993970 + L1MB7 LINE L1 6017 6184 0 2062 127 16 10 chr6 40421281 40421588 -141993654 + AluSx SINE Alu 2 310 -2 410 254 35 12 chr6 40421588 40421757 -141993485 + L1ME3A LINE L1 5778 5950 -220 2036 140 13 7 chr6 40421927 40422234 -141993008 + AluSx SINE Alu 1 309 -3 1430 183 107 8 chr6 40422330 40422487 -141992755 - AluJo SINE Alu -24 288 148 2236 113 0 3 chr6 40422487 40422788 -141992454 - AluSx SINE Alu -12 300 1 1430 183 107 8 chr6 40422788 40422892 -141992350 - AluJo SINE Alu -164 148 1 28 0 0 26 chr6 40422892 40422916 -141992326 + AT_rich Low_complexity Low_complexity 1 25 -13 2331 80 7 0 chr6 40422916 40423203 -141992039 - AluSq SINE Alu -24 289 1 28 0 0 26 chr6 40423203 40423217 -141992025 + AT_rich Low_complexity Low_complexity 25 38 0 652 209 12 78 chr6 40424118 40424226 -141991016 + L1MC5 LINE L1 7603 7688 -273 2601 137 30 2 chr6 40424226 40424665 -141990577 + L1MB3 LINE L1 5733 6183 0 652 209 12 78 chr6 40424665 40424800 -141990442 + L1MC5 LINE L1 7688 7830 -131 2087 98 41 10 chr6 40424801 40425096 -141990146 - AluSg SINE Alu -6 304 1 473 103 15 0 chr6 40425229 40425297 -141989945 - AluS SINE Alu -241 71 3 375 212 8 59 chr6 40425301 40425419 -141989823 + L1MC5 LINE L1 7824 7935 -26 3341 165 29 21 chr6 40425466 40426095 -141989147 + L1MA8 LINE L1 5423 6056 -235 457 171 27 96 chr6 40426087 40426233 -141989009 + L1MA7 LINE L1 6155 6290 -1 * 2132 122 7 0 chr6 40426248 40426543 -141988699 - AluSx SINE Alu -15 297 1 180 0 0 0 chr6 40426686 40426706 -141988536 + (A)n Simple_repeat Simple_repeat 1 20 0 234 238 138 12 chr6 40427564 40427644 -141987598 - L2 LINE L2 -3 3310 3221 217 288 0 15 chr6 40427916 40427982 -141987260 - MIR3 SINE MIR -22 186 122 1985 133 10 3 chr6 40428022 40428316 -141986926 + AluJb SINE Alu 1 296 -16 285 172 118 75 chr6 40428316 40428374 -141986868 + MER5A DNA MER1_type 67 132 -57 2322 103 0 0 chr6 40428374 40428676 -141986566 - AluY SINE Alu -9 302 1 285 172 118 75 chr6 40428676 40428710 -141986532 + MER5A DNA MER1_type 132 163 -26 648 233 29 94 chr6 40428725 40428820 -141986422 + L1ME4a LINE L1 5541 5641 -480 2284 82 7 0 chr6 40428820 40429132 -141986110 - AluY SINE Alu 0 314 1 648 233 29 94 chr6 40429132 40429344 -141985898 + L1ME4a LINE L1 5641 5829 -292 721 225 0 0 chr6 40429344 40429482 -141985760 + FLAM_C SINE Alu 1 138 -5 612 215 51 99 chr6 40429499 40429792 -141985450 + L1ME4a LINE L1 5840 6118 -3 2057 108 45 7 chr6 40429803 40430091 -141985151 + AluJb SINE Alu 1 299 -13 827 232 27 13 chr6 40430425 40430673 -141984569 + MIR SINE MIR 16 262 0 371 240 10 42 chr6 40430932 40431028 -141984214 + L2 LINE L2 3179 3271 -1 265 273 58 65 chr6 40431082 40431221 -141984021 + MIR SINE MIR 52 189 -73 532 264 16 0 chr6 40431322 40431447 -141983795 + FLAM_A SINE Alu 1 127 -6 1602 157 87 23 chr6 40436574 40436985 -141978257 - MER106B DNA MER1_type -3 1056 608 2136 110 0 29 chr6 40436985 40437294 -141977948 - AluSg SINE Alu -10 300 1 1602 157 87 23 chr6 40437294 40437367 -141977875 - MER106B DNA MER1_type -451 608 541 2143 107 7 4 chr6 40437367 40437673 -141977569 + AluSx SINE Alu 1 307 0 21201 134 45 33 chr6 40437676 40437764 -141977478 + L1MB8 LINE L1 10 95 -7470 1051 172 121 79 chr6 40437764 40438054 -141977188 + AluJb SINE Alu 1 302 0 21201 134 45 33 chr6 40438054 40438646 -141976596 + L1MB8 LINE L1 95 678 -6887 441 0 0 0 chr6 40438646 40438695 -141976547 + (GGAGA)n Simple_repeat Simple_repeat 4 52 0 21201 134 45 33 chr6 40438695 40440234 -141975008 + L1MB8 LINE L1 678 2197 -5368 1495 183 38 38 chr6 40440234 40440523 -141974719 + AluJo SINE Alu 1 289 -23 21201 134 45 33 chr6 40440523 40441070 -141974172 + L1MB8 LINE L1 2197 2736 -4829 2268 88 3 20 chr6 40441070 40441367 -141973875 - AluSp SINE Alu -15 298 7 21201 134 45 33 chr6 40441367 40441936 -141973306 + L1MB8 LINE L1 2736 3398 -4167 2074 147 20 0 chr6 40441936 40442242 -141973000 + AluSx SINE Alu 1 312 0 21201 134 45 33 chr6 40442242 40442605 -141972637 + L1MB8 LINE L1 3398 3755 -3810 2202 128 0 0 chr6 40442608 40442905 -141972337 - AluSx SINE Alu -15 297 1 189 0 0 0 chr6 40442906 40442927 -141972315 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 619 115 0 0 chr6 40442934 40443021 -141972221 - AluJb SINE Alu -19 293 207 1832 156 10 3 chr6 40443021 40443316 -141971926 + AluJb SINE Alu 14 310 -2 6623 171 33 108 chr6 40443317 40444797 -141970445 + L1MB8 LINE L1 4449 6038 -1686 2113 119 0 0 chr6 40444797 40445074 -141970168 + AluSx SINE Alu 14 290 -22 6623 171 33 108 chr6 40445074 40445332 -141969910 + L1MB8 LINE L1 6038 6314 -1410 2455 62 0 3 chr6 40445332 40445620 -141969622 + AluY SINE Alu 1 287 -24 6623 171 33 108 chr6 40445620 40445638 -141969604 + L1MB8 LINE L1 6314 6332 -1392 1180 152 0 0 chr6 40445638 40445802 -141969440 + AluJb SINE Alu 129 292 -20 6623 171 33 108 chr6 40445802 40445863 -141969379 + L1MB8 LINE L1 6332 6396 -1328 248 0 31 0 chr6 40445863 40445895 -141969347 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6623 171 33 108 chr6 40445895 40446654 -141968588 + L1MB8 LINE L1 6396 7210 -514 1952 155 3 0 chr6 40446654 40446944 -141968298 + AluSx SINE Alu 1 291 -21 2407 93 0 7 chr6 40446947 40447257 -141967985 + AluY SINE Alu 1 308 -3 6623 171 33 108 chr6 40447257 40447576 -141967666 + L1MB8 LINE L1 6824 7165 -559 1285 96 25 0 chr6 40447576 40447771 -141967471 + L1MA3 LINE L1 6103 6305 0 1770 123 89 150 chr6 40447777 40447945 -141967297 - MER106B DNA MER1_type -508 551 374 1937 179 0 0 chr6 40447945 40448247 -141966995 + AluJo SINE Alu 1 302 -10 1770 123 89 150 chr6 40448247 40448559 -141966683 - MER106B DNA MER1_type -685 374 100 22 35 0 0 chr6 40448559 40448588 -141966654 + AT_rich Low_complexity Low_complexity 1 29 0 591 89 13 0 chr6 40448588 40448667 -141966575 - AluJ/FLAM SINE Alu -232 80 1 347 219 0 14 chr6 40448667 40448740 -141966502 - MER106B DNA MER1_type -948 111 40 957 182 87 9 chr6 40448740 40448971 -141966271 + L1MB8 LINE L1 7349 7597 0 289 208 19 0 chr6 40448972 40449025 -141966217 - MER106B DNA MER1_type -1005 54 1 582 124 160 108 chr6 40449625 40449819 -141965423 + MER3 DNA MER1_type 1 204 -5 1462 121 0 10 chr6 40449860 40450059 -141965183 + AluSq SINE Alu 1 197 -116 32 0 0 0 chr6 40450059 40450091 -141965151 + AT_rich Low_complexity Low_complexity 1 32 0 626 216 8 15 chr6 40450095 40450229 -141965013 + FLAM_A SINE Alu 1 133 0 1169 153 30 125 chr6 40450241 40450317 -141964925 - MER33 DNA MER1_type -2271 314 232 2295 79 14 3 chr6 40450317 40450608 -141964634 + AluY SINE Alu 1 294 -17 1169 153 30 125 chr6 40450608 40450633 -141964609 - MER33 DNA MER1_type -2353 232 206 2252 95 0 43 chr6 40450633 40450959 -141964283 - AluSq SINE Alu -1 312 1 1169 153 30 125 chr6 40450959 40451061 -141964181 - MER33 DNA MER1_type -2379 206 156 2448 124 100 96 chr6 40451061 40451673 -141963569 + LTR18B LTR ERVL 1 614 0 1169 153 30 125 chr6 40451673 40451828 -141963414 - MER33 DNA MER1_type -2429 156 1 2360 75 4 0 chr6 40451979 40452260 -141962982 - AluSp SINE Alu -31 282 1 1539 189 47 0 chr6 40452270 40452566 -141962676 - AluJb SINE Alu -2 310 1 1862 146 21 7 chr6 40453540 40453820 -141961422 - AluJo SINE Alu -20 292 9 969 150 7 0 chr6 40453829 40453969 -141961273 - AluJo SINE Alu -171 141 1 257 215 23 115 chr6 40454183 40454313 -141960929 - MIR SINE MIR -64 198 81 298 337 5 74 chr6 40454515 40454705 -141960537 - MER5B DNA MER1_type -1 177 1 985 199 0 0 chr6 40457112 40457273 -141957969 - FRAM SINE Alu -5 161 1 2174 90 17 0 chr6 40457281 40457580 -141957662 - AluSc SINE Alu -3 306 3 895 189 122 45 chr6 40457920 40458142 -141957100 + MER8 DNA MER2_type 1 239 0 420 183 120 57 chr6 40458351 40458479 -141956763 + L1MB8 LINE L1 5254 5373 -2435 1896 126 3 46 chr6 40458479 40458805 -141956437 + AluJo SINE Alu 1 312 0 1711 179 3 7 chr6 40458809 40459116 -141956126 + AluJb SINE Alu 2 307 -5 2244 92 0 0 chr6 40459116 40459409 -141955833 + AluSc SINE Alu 1 293 -16 420 183 120 57 chr6 40459409 40459449 -141955793 + L1MB8 LINE L1 5374 5439 -2369 943 239 48 67 chr6 40459452 40459801 -141955441 + L1ME3A LINE L1 4851 5188 -958 2339 87 0 0 chr6 40459801 40460100 -141955142 + AluSq SINE Alu 1 299 -14 943 239 48 67 chr6 40460100 40460290 -141954952 + L1ME3A LINE L1 5188 5380 -766 687 224 178 4 chr6 40460291 40460555 -141954687 + L1ME3A LINE L1 5403 5712 -454 397 233 69 9 chr6 40460574 40460622 -141954620 - L1MD3 LINE L1 -1811 6184 6140 2088 93 0 33 chr6 40460622 40460922 -141954320 - AluSg SINE Alu -20 290 1 397 233 69 9 chr6 40460922 40460989 -141954253 - L1MD3 LINE L1 -1855 6140 6062 1650 130 13 63 chr6 40460992 40461116 -141954126 + AluSx SINE Alu 18 147 -165 1945 121 0 36 chr6 40461116 40461421 -141953821 + AluSg SINE Alu 1 294 -16 1650 130 13 63 chr6 40461421 40461597 -141953645 + AluSx SINE Alu 147 303 -9 632 232 53 0 chr6 40461611 40461762 -141953480 + L1ME3A LINE L1 5750 5908 -262 236 182 0 0 chr6 40461771 40461815 -141953427 - L1MB8 LINE L1 -331 5853 5810 1798 139 52 3 chr6 40461824 40462133 -141953109 + L1MB8 LINE L1 5844 6167 -11 2075 138 3 0 chr6 40462172 40462483 -141952759 - AluSp SINE Alu -1 312 1 692 236 24 118 chr6 40462531 40462760 -141952482 + L1MC4 LINE L1 5655 5845 -1963 2305 80 0 13 chr6 40462760 40463062 -141952180 - AluSg SINE Alu -12 298 1 692 236 24 118 chr6 40463062 40463163 -141952079 + L1MC4 LINE L1 5845 5954 -1854 2063 93 0 10 chr6 40463320 40463610 -141951632 + AluSq SINE Alu 24 310 -3 2286 84 3 3 chr6 40463889 40464198 -141951044 - AluSc SINE Alu 0 309 1 930 282 75 3 chr6 40464225 40464530 -141950712 + L1MC4 LINE L1 6703 7029 -1013 1797 177 3 0 chr6 40464571 40464871 -141950371 + AluJb SINE Alu 1 301 -11 2097 98 27 0 chr6 40464907 40465202 -141950040 + AluSx SINE Alu 1 303 -9 1207 154 85 8 chr6 40465217 40465463 -141949779 + L1ME LINE L1 5542 5806 -360 854 167 6 26 chr6 40465463 40465619 -141949623 + MLT1A1 LTR MaLR 1 153 -212 1964 133 7 3 chr6 40465631 40465933 -141949309 + AluSq SINE Alu 10 312 -1 508 235 78 90 chr6 40465953 40466258 -141948984 + L1MC5 LINE L1 7272 7579 -382 2102 135 0 0 chr6 40466258 40466569 -141948673 + AluSx SINE Alu 1 311 -1 508 235 78 90 chr6 40466569 40466655 -141948587 + L1MC5 LINE L1 7579 7658 -303 2275 59 0 77 chr6 40466655 40466978 -141948264 - AluSq SINE Alu -15 298 1 508 235 78 90 chr6 40466978 40467062 -141948180 + L1MC5 LINE L1 7658 7742 -219 1190 167 14 5 chr6 40467064 40467279 -141947963 + AluSg/x SINE Alu 77 293 -19 1780 157 27 3 chr6 40467397 40467697 -141947545 + AluJo SINE Alu 5 311 -1 337 194 32 21 chr6 40467713 40467806 -141947436 + L1MC5 LINE L1 7832 7925 -36 331 293 66 0 chr6 40468020 40468126 -141947116 + L2 LINE L2 3201 3313 0 1904 108 56 3 chr6 40468361 40468647 -141946595 - AluSq SINE Alu -12 301 1 1889 123 53 0 chr6 40468691 40468975 -141946267 + AluSq SINE Alu 2 300 -13 685 31 62 21 chr6 40469688 40469784 -141945458 - HY3 scRNA scRNA -1 100 1 2331 68 3 0 chr6 40469973 40470268 -141944974 + AluSp SINE Alu 1 296 -17 1377 186 100 4 chr6 40470277 40470546 -141944696 + AluJo SINE Alu 1 295 -7 278 86 16 114 chr6 40471111 40471188 -141944054 + LTR40c LTR ERVL 392 461 -1 696 224 13 6 chr6 40471218 40471374 -141943868 + L1MC5 LINE L1 7289 7445 -516 1745 10 0 0 chr6 40471876 40472072 -141943170 + L1PA2 LINE L1 5957 6152 -3 1911 159 0 0 chr6 40472740 40473042 -141942200 - AluJb SINE Alu -10 302 1 2324 46 0 26 chr6 40473071 40473377 -141941865 + AluY SINE Alu 1 298 -13 1776 216 41 36 chr6 40473378 40473794 -141941448 + LTR40c LTR ERVL 35 452 -13 27 0 0 0 chr6 40474228 40474255 -141940987 + AT_rich Low_complexity Low_complexity 1 27 0 1743 152 7 26 chr6 40474596 40474906 -141940336 - AluJo SINE Alu -8 304 1 1955 118 7 16 chr6 40475283 40475588 -141939654 + AluSx SINE Alu 1 302 -10 1923 138 0 0 chr6 40475679 40475987 -141939255 + AluSx SINE Alu 1 308 0 453 256 147 6 chr6 40476059 40476258 -141938984 - MIR SINE MIR 0 262 38 1931 144 6 10 chr6 40476913 40477226 -141938016 + AluSx SINE Alu 1 312 0 541 254 28 7 chr6 40477845 40477987 -141937255 - MIR3 SINE MIR -7 201 57 1287 185 83 22 chr6 40478475 40478751 -141936491 + AluJo SINE Alu 1 293 -19 2177 88 7 3 chr6 40478886 40479182 -141936060 - AluSq SINE Alu -16 297 1 1240 185 44 47 chr6 40479188 40479349 -141935893 - AluJo SINE Alu -16 296 135 1865 116 7 31 chr6 40479349 40479642 -141935600 - AluSx SINE Alu -7 305 20 1240 185 44 47 chr6 40479642 40479777 -141935465 - AluJo SINE Alu -177 135 1 896 251 86 14 chr6 40479784 40480075 -141935167 - L1M4 LINE L1 -1317 4829 4518 393 208 0 0 chr6 40480087 40480164 -141935078 - Tigger2 DNA MER2_type -2383 335 259 * 3807 153 17 48 chr6 40480162 40480460 -141934782 + Tigger2 DNA MER2_type 61 367 -2351 1494 138 63 7 chr6 40480460 40480729 -141934513 + AluJo SINE Alu 1 284 -28 3807 153 17 48 chr6 40480729 40481136 -141934106 + Tigger2 DNA MER2_type 367 744 -1974 1421 136 30 53 chr6 40481205 40481373 -141933869 + Tigger2 DNA MER2_type 2461 2623 -95 1739 124 40 4 chr6 40481373 40481679 -141933563 + AluSx SINE Alu 1 316 0 1421 136 30 53 chr6 40481679 40481773 -141933469 + Tigger2 DNA MER2_type 2623 2718 0 506 263 49 49 chr6 40481775 40481825 -141933417 - L1M4 LINE L1 -2401 3745 3696 1831 151 3 3 chr6 40481825 40482117 -141933125 - AluJb SINE Alu -19 293 2 506 263 49 49 chr6 40482117 40482290 -141932952 - L1M4 LINE L1 -2449 3697 3522 510 266 44 55 chr6 40482293 40482352 -141932890 - L1M4 LINE L1 -2735 3411 3353 1902 138 24 0 chr6 40482352 40482643 -141932599 + AluJb SINE Alu 1 298 -14 510 266 44 55 chr6 40482643 40482854 -141932388 - L1M4 LINE L1 -2793 3353 3144 2293 87 3 10 chr6 40482855 40483167 -141932075 - AluSq SINE Alu -3 310 1 2022 121 3 3 chr6 40483173 40483471 -141931771 - AluSx SINE Alu -14 298 1 233 100 0 0 chr6 40483816 40483846 -141931396 + Alu SINE Alu 1 30 -270 1943 112 11 0 chr6 40484270 40484548 -141930694 + AluSq SINE Alu 2 282 -31 894 201 3 145 chr6 40485405 40485475 -141929767 - MIR SINE MIR 0 262 184 857 153 0 29 chr6 40485475 40485612 -141929630 - FLAM_A SINE Alu 0 133 1 2006 139 0 0 chr6 40485617 40485918 -141929324 - AluSx SINE Alu -11 301 1 894 201 3 145 chr6 40485918 40485938 -141929304 - MIR SINE MIR -82 180 159 1568 176 47 0 chr6 40485938 40486217 -141929025 - AluJb SINE Alu -20 292 1 894 201 3 145 chr6 40486217 40486408 -141928834 - MIR SINE MIR -103 159 15 204 369 62 28 chr6 40486549 40486725 -141928517 + L2 LINE L2 2796 2977 -337 739 186 69 100 chr6 40487951 40488032 -141927210 - MER20B DNA MER1_type -5 778 696 1878 122 7 33 chr6 40488032 40488335 -141926907 - AluJb SINE Alu -17 295 1 739 186 69 100 chr6 40488335 40488544 -141926698 - MER20B DNA MER1_type -87 696 497 1150 106 0 22 chr6 40488550 40488568 -141926674 + AluSq SINE Alu 116 133 -180 2117 84 35 0 chr6 40488568 40488855 -141926387 + AluSq SINE Alu 1 297 -16 1150 106 0 22 chr6 40488855 40489043 -141926199 + AluSq SINE Alu 133 313 0 947 241 136 34 chr6 40489089 40489192 -141926050 - MER20B DNA MER1_type -364 419 328 2106 57 3 57 chr6 40489192 40489527 -141925715 + AluY SINE Alu 1 319 0 947 241 136 34 chr6 40489527 40489746 -141925496 - MER20B DNA MER1_type -455 328 63 1620 123 0 32 chr6 40490193 40490446 -141924796 + AluSx SINE Alu 1 245 -67 193 222 44 0 chr6 40490861 40490906 -141924336 - L2 LINE L2 -80 3192 3146 488 266 162 6 chr6 40491433 40491606 -141923636 - MIR SINE MIR -61 201 2 1094 141 0 0 chr6 40491724 40491887 -141923355 - AluJb SINE Alu -15 297 135 1996 135 0 0 chr6 40491987 40492290 -141922952 + AluSx SINE Alu 1 303 -9 225 94 0 0 chr6 40492615 40492647 -141922595 + (A)n Simple_repeat Simple_repeat 1 32 0 2329 227 87 15 chr6 40492655 40493253 -141921989 + L1ME3A LINE L1 5452 6092 -78 846 227 79 22 chr6 40493283 40493512 -141921730 + MIR SINE MIR 8 249 -13 320 257 188 21 chr6 40493645 40493789 -141921453 + MIR3 SINE MIR 17 184 -24 511 262 157 29 chr6 40494098 40494226 -141921016 - MIR SINE MIR -14 248 138 1842 89 0 4 chr6 40494226 40494473 -141920769 + AluSc SINE Alu 1 246 -63 511 262 157 29 chr6 40494473 40494554 -141920688 - MIR SINE MIR -124 138 12 291 268 49 12 chr6 40494810 40494892 -141920350 + L2 LINE L2 3221 3305 -8 2222 83 0 19 chr6 40495528 40495840 -141919402 + AluSc SINE Alu 1 306 -3 1595 151 34 10 chr6 40495851 40496142 -141919100 + AluJo SINE Alu 1 298 -14 2295 69 3 16 chr6 40496142 40496446 -141918796 + AluSc SINE Alu 1 300 -9 381 250 62 0 chr6 40496501 40496597 -141918645 + MIR SINE MIR 45 146 -62 373 197 66 0 chr6 40496805 40496881 -141918361 - MIR SINE MIR -14 248 168 1259 75 35 0 chr6 40496885 40497059 -141918183 - L1MA1 LINE L1 0 6302 6123 1393 116 14 0 chr6 40497059 40497266 -141917976 - AluSg/x SINE Alu -18 292 83 288 68 0 0 chr6 40497267 40497311 -141917931 - L1MA1 LINE L1 -220 6082 6039 224 167 24 0 chr6 40497312 40497354 -141917888 - MIR SINE MIR -96 166 124 22 0 0 0 chr6 40498757 40498779 -141916463 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 40499160 40499184 -141916058 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr6 40499251 40499279 -141915963 + GC_rich Low_complexity Low_complexity 1 28 0 212 379 0 0 chr6 40499488 40499554 -141915688 - L2 LINE L2 -2 3270 3205 467 221 134 0 chr6 40499805 40499932 -141915310 - MIR3 SINE MIR -34 174 31 1829 137 7 0 chr6 40500317 40500602 -141914640 + AluJb SINE Alu 1 287 -25 2134 86 17 0 chr6 40501186 40501467 -141913775 + AluSp SINE Alu 1 289 -24 233 29 0 29 chr6 40501467 40501502 -141913740 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5457 139 19 56 chr6 40501537 40501607 -141913635 - L1MD1 LINE L1 0 6242 6171 2012 110 38 0 chr6 40501607 40501897 -141913345 + AluSx SINE Alu 1 301 -11 5457 139 19 56 chr6 40501897 40502053 -141913189 - L1MD1 LINE L1 -71 6171 6011 2157 92 3 3 chr6 40502053 40502345 -141912897 - AluSx SINE Alu -20 292 1 5457 139 19 56 chr6 40502345 40502513 -141912729 - L1MD1 LINE L1 -231 6011 5838 1872 146 0 16 chr6 40502513 40502829 -141912413 - AluJo SINE Alu -1 311 1 5457 139 19 56 chr6 40502829 40503489 -141911753 - L1MD1 LINE L1 -404 5838 5226 1069 139 5 59 chr6 40503490 40503692 -141911550 - AluJb SINE Alu 0 312 122 6482 51 17 76 chr6 40503692 40505453 -141909789 - SVA Other Other -683 1386 3 499 91 11 11 chr6 40505463 40505551 -141909691 + (GGGAGA)n Simple_repeat Simple_repeat 3 90 0 859 131 0 15 chr6 40505552 40505689 -141909553 - AluJb SINE Alu -177 135 1 2424 53 3 0 chr6 40505740 40506039 -141909203 - AluSp SINE Alu -3 310 11 479 200 0 11 chr6 40506107 40506197 -141909045 - AluJo SINE Alu -101 211 123 1852 133 4 0 chr6 40506200 40506478 -141908764 - AluSx SINE Alu -33 279 1 1396 208 113 40 chr6 40506479 40506615 -141908627 - L1MD1 LINE L1 -1293 4853 4728 1258 178 106 0 chr6 40506615 40506890 -141908352 - AluJo SINE Alu -8 304 1 1396 208 113 40 chr6 40506890 40506945 -141908297 - L1MD1 LINE L1 -1418 4728 4678 1497 148 84 47 chr6 40506945 40507243 -141907999 - AluSq SINE Alu -4 309 1 1396 208 113 40 chr6 40507243 40507598 -141907644 - L1MD1 LINE L1 -1468 4678 4266 744 217 0 32 chr6 40507653 40507810 -141907432 - AluJb SINE Alu -15 297 146 1258 204 106 0 chr6 40507813 40508170 -141907072 - L1MD1 LINE L1 -1902 4244 3850 1583 104 0 0 chr6 40508181 40508393 -141906849 - AluSq SINE Alu -17 296 85 1039 69 0 0 chr6 40508396 40508527 -141906715 - AluSp SINE Alu -181 132 2 2207 93 3 0 chr6 40508532 40508823 -141906419 - AluSp SINE Alu -21 292 1 452 270 35 0 chr6 40508826 40508941 -141906301 - L1MD1 LINE L1 -2300 3846 3728 * 2550 171 74 32 chr6 40508932 40509178 -141906064 - L1M4 LINE L1 -743 5403 5169 2137 128 0 6 chr6 40509178 40509491 -141905751 + AluSx SINE Alu 1 311 -1 2550 171 74 32 chr6 40509491 40509929 -141905313 - L1M4 LINE L1 -977 5169 4730 2062 75 7 0 chr6 40509941 40510072 -141905170 + AluY SINE Alu 1 130 -177 180 0 0 0 chr6 40510072 40510092 -141905150 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2062 75 7 0 chr6 40510092 40510265 -141904977 + AluY SINE Alu 130 307 0 2210 94 0 3 chr6 40510270 40510579 -141904663 + AluY SINE Alu 4 311 0 27 0 0 0 chr6 40510579 40510606 -141904636 + AT_rich Low_complexity Low_complexity 1 27 0 785 107 24 83 chr6 40510608 40510737 -141904505 - L1MDa LINE L1 -4142 2398 2280 2224 43 46 0 chr6 40510737 40511019 -141904223 - AluY SINE Alu -16 295 1 785 107 24 83 chr6 40511019 40511058 -141904184 - L1MDa LINE L1 -4260 2280 2240 2156 100 3 0 chr6 40511058 40511357 -141903885 - AluSx SINE Alu -12 300 1 2149 79 0 16 chr6 40511748 40512051 -141903191 + AluSq SINE Alu 1 298 -15 1246 117 66 5 chr6 40512387 40512583 -141902659 - AluJb SINE Alu -19 293 86 2416 60 0 0 chr6 40512820 40513121 -141902121 - AluY SINE Alu -10 301 1 2063 106 0 0 chr6 40513215 40513521 -141901721 + AluSg SINE Alu 1 306 0 1398 140 42 39 chr6 40513847 40514133 -141901109 - AluJb SINE Alu -25 287 1 267 255 163 20 chr6 40514172 40514270 -141900972 + MER5A DNA MER1_type 53 164 -25 2299 82 0 0 chr6 40514362 40514656 -141900586 - AluSc SINE Alu -15 294 1 2465 47 3 0 chr6 40514850 40515147 -141900095 + AluY SINE Alu 1 298 -13 955 209 75 98 chr6 40515189 40515548 -141899694 - L1MC4a LINE L1 -1937 5871 5521 2144 111 0 7 chr6 40515555 40515861 -141899381 - AluSg SINE Alu -6 304 1 846 205 0 0 chr6 40515990 40516156 -141899086 + FRAM SINE Alu 1 165 -11 653 212 0 0 chr6 40516214 40516332 -141898910 + FLAM_C SINE Alu 2 119 -24 1704 172 16 7 chr6 40516348 40516656 -141898586 - AluJb SINE Alu -1 311 1 1932 105 36 4 chr6 40516662 40516987 -141898255 - AluSx SINE Alu 0 336 3 249 194 161 0 chr6 40518915 40518977 -141896265 + Charlie8 DNA MER1_type 73 144 -2273 573 147 45 106 chr6 40518978 40519176 -141896066 - L1MC5 LINE L1 -36 7925 7740 410 303 8 0 chr6 40519205 40519324 -141895918 + Charlie8 DNA MER1_type 144 263 -2154 21 0 0 0 chr6 40519596 40519617 -141895625 + AT_rich Low_complexity Low_complexity 1 21 0 2187 96 0 10 chr6 40519879 40520182 -141895060 - AluSc SINE Alu -9 300 1 498 154 55 0 chr6 40520673 40520764 -141894478 + L1MC3 LINE L1 7078 7173 -612 2266 97 3 0 chr6 40520987 40521287 -141893955 - AluSp SINE Alu -11 302 2 320 261 50 68 chr6 40521645 40521736 -141893506 + L1ME LINE L1 5667 5755 -366 1649 94 140 0 chr6 40521736 40522001 -141893241 + AluSx SINE Alu 1 302 0 320 261 50 68 chr6 40522001 40522070 -141893172 + L1ME LINE L1 5755 5824 -297 2186 121 0 6 chr6 40522445 40522759 -141892483 - AluSx SINE Alu 0 312 1 1450 196 32 0 chr6 40523609 40523890 -141891352 - AluJb SINE Alu -22 290 1 1988 133 7 10 chr6 40524730 40525038 -141890204 + AluJo SINE Alu 1 307 -5 1659 174 3 10 chr6 40525188 40525482 -141889760 + AluJo SINE Alu 1 292 -20 1873 125 3 24 chr6 40525486 40525823 -141889419 + AluSx SINE Alu 1 331 0 280 119 169 0 chr6 40525839 40525898 -141889344 + L1MC5 LINE L1 7754 7822 -139 1013 206 38 10 chr6 40525898 40526107 -141889135 + MER20 DNA MER1_type 1 215 -4 2091 103 3 0 chr6 40526198 40526489 -141888753 - AluSx SINE Alu -20 292 1 26 0 0 0 chr6 40526533 40526559 -141888683 + AT_rich Low_complexity Low_complexity 1 26 0 1914 112 0 53 chr6 40526559 40526723 -141888519 - AluSx SINE Alu -23 289 147 2357 71 13 0 chr6 40526723 40527031 -141888211 - AluSp SINE Alu -1 312 1 1914 112 0 53 chr6 40527031 40527169 -141888073 - AluSx SINE Alu -165 147 3 27 29 0 0 chr6 40527180 40527214 -141888028 + AT_rich Low_complexity Low_complexity 1 34 0 2054 76 25 0 chr6 40527214 40527523 -141887719 + AluSx SINE Alu 1 316 0 2063 113 10 0 chr6 40527527 40527827 -141887415 - AluSx SINE Alu -9 303 1 372 231 75 106 chr6 40528815 40528910 -141886332 + MER58A DNA MER1_type 1 91 -250 1646 179 0 7 chr6 40528910 40529206 -141886036 - AluJb SINE Alu -17 295 2 372 231 75 106 chr6 40529206 40529270 -141885972 + MER58A DNA MER1_type 91 155 -69 757 212 0 0 chr6 40529273 40529410 -141885832 + FRAM SINE Alu 24 160 -16 2137 85 37 0 chr6 40529418 40529713 -141885529 + AluY SINE Alu 1 306 -5 2056 121 7 0 chr6 40529789 40530086 -141885156 + AluSx SINE Alu 1 299 -13 2040 112 10 19 chr6 40530148 40530460 -141884782 - AluSg SINE Alu -1 309 1 1351 153 141 0 chr6 40530853 40531115 -141884127 + AluSg SINE Alu 1 299 -11 3215 163 71 122 chr6 40531388 40531833 -141883409 + Charlie1a DNA MER1_type 3 469 -2292 561 157 0 0 chr6 40531833 40531916 -141883326 - AluJ/FLAM SINE Alu -228 84 2 3215 163 71 122 chr6 40531916 40532177 -141883065 + Charlie1a DNA MER1_type 469 738 -2023 2053 30 45 22 chr6 40532177 40532444 -141882798 - AluY SINE Alu 0 311 39 3215 163 71 122 chr6 40532444 40532594 -141882648 + Charlie1a DNA MER1_type 738 894 -561 2218 82 3 0 chr6 40532612 40532906 -141882336 + AluSp SINE Alu 1 295 -18 588 213 87 0 chr6 40532959 40533086 -141882156 - AluJb SINE Alu -39 273 136 551 270 0 61 chr6 40533941 40534096 -141881146 - L2 LINE L2 0 3313 3171 1551 152 7 56 chr6 40534096 40534242 -141881000 + AluJb SINE Alu 2 127 -175 2259 70 0 0 chr6 40534242 40534541 -141880701 + AluSx SINE Alu 1 299 -13 1551 152 7 56 chr6 40534541 40534697 -141880545 + AluJb SINE Alu 127 289 -13 551 270 0 61 chr6 40534697 40534737 -141880505 - L2 LINE L2 -142 3171 3130 2317 68 0 10 chr6 40534805 40535116 -141880126 - AluY SINE Alu -2 309 2 367 224 224 15 chr6 40535432 40535566 -141879676 - MIR SINE MIR 0 262 101 1262 164 95 8 chr6 40535724 40535986 -141879256 - AluJb SINE Alu -12 300 16 27 0 0 0 chr6 40536040 40536067 -141879175 + AT_rich Low_complexity Low_complexity 1 27 0 329 296 184 28 chr6 40536075 40536314 -141878928 + L1MC4 LINE L1 7333 7714 -328 2031 131 0 6 chr6 40536408 40536722 -141878520 - AluSx SINE Alu 0 312 1 936 178 0 25 chr6 40536838 40537001 -141878241 + FRAM SINE Alu 1 159 -7 2120 107 0 7 chr6 40537001 40537300 -141877942 + AluSc SINE Alu 1 297 -12 667 229 82 69 chr6 40537519 40537712 -141877530 + LTR33A LTR ERVL 269 467 -56 2532 36 0 3 chr6 40537712 40538015 -141877227 - AluY SINE Alu -9 302 1 667 229 82 69 chr6 40538015 40538066 -141877176 + LTR33A LTR ERVL 467 516 -7 189 107 0 0 chr6 40538066 40538094 -141877148 + (TA)n Simple_repeat Simple_repeat 2 29 0 2314 90 3 0 chr6 40538518 40538828 -141876414 - AluY SINE Alu 0 311 1 2171 115 0 0 chr6 40538830 40539134 -141876108 - AluSx SINE Alu -8 304 1 675 254 70 60 chr6 40539170 40539374 -141875868 - L1MC4a LINE L1 -1952 5856 5656 2087 126 0 0 chr6 40539374 40539683 -141875559 + AluSx SINE Alu 1 309 -3 2060 110 3 52 chr6 40539687 40540015 -141875227 + AluSx SINE Alu 1 312 0 675 254 70 60 chr6 40540015 40540104 -141875138 - L1MC4a LINE L1 -2154 5654 5555 249 196 27 98 chr6 40540116 40540159 -141875083 - L1MC4a LINE L1 -2338 5470 5426 1853 123 28 3 chr6 40540159 40540444 -141874798 - AluSx SINE Alu -20 292 1 249 196 27 98 chr6 40540444 40540512 -141874730 - L1MC4a LINE L1 -2382 5426 5367 1333 165 0 0 chr6 40540517 40540729 -141874513 + AluJb SINE Alu 87 298 -14 277 136 0 0 chr6 40540759 40540803 -141874439 - Alu SINE Alu -8 294 251 253 81 0 54 chr6 40540803 40540840 -141874402 - Alu SINE Alu -17 284 250 1709 138 0 4 chr6 40540840 40541100 -141874142 - AluSx SINE Alu -27 285 27 439 334 64 42 chr6 40541111 40541176 -141874066 - L1MC4a LINE L1 -757 5389 5327 2188 109 0 6 chr6 40541176 40541489 -141873753 - AluY SINE Alu 0 311 1 439 334 64 42 chr6 40541489 40541758 -141873484 - L1MC4a LINE L1 -819 5327 5044 2182 116 0 0 chr6 40541758 40542060 -141873182 + AluSx SINE Alu 1 302 -10 439 334 64 42 chr6 40542060 40542083 -141873159 - L1MC4a LINE L1 -1102 5044 5023 239 79 26 0 chr6 40542083 40542121 -141873121 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1585 173 11 18 chr6 40542166 40542449 -141872793 - AluJo SINE Alu -31 281 1 563 277 71 92 chr6 40542451 40542819 -141872423 - L1MC4a LINE L1 -1099 5047 4688 391 272 59 64 chr6 40542858 40543060 -141872182 - MLT1K LTR MaLR -10 578 378 259 381 108 7 chr6 40543516 40543655 -141871587 - L2 LINE L2 -6 3266 3114 1054 231 4 48 chr6 40543699 40543908 -141871334 + MIR SINE MIR 7 203 -59 2389 75 0 0 chr6 40543908 40544214 -141871028 + AluY SINE Alu 1 306 -5 1054 231 4 48 chr6 40544214 40544272 -141870970 + MIR SINE MIR 203 262 0 1647 163 30 3 chr6 40545335 40545630 -141869612 - AluJb SINE Alu -9 303 1 183 139 0 0 chr6 40545810 40545846 -141869396 + (CA)n Simple_repeat Simple_repeat 2 37 0 383 307 190 0 chr6 40545910 40546115 -141869127 - MIR SINE MIR -6 256 13 829 129 23 23 chr6 40546320 40546452 -141868790 - FLAM_C SINE Alu 0 133 2 856 151 0 108 chr6 40547124 40547282 -141867960 - AluJo SINE Alu -26 286 149 1729 151 3 22 chr6 40547282 40547599 -141867643 - AluJo SINE Alu -1 311 1 856 151 0 108 chr6 40547599 40547625 -141867617 - AluJo SINE Alu -163 149 122 487 125 33 150 chr6 40547671 40547708 -141867534 - HY1 scRNA scRNA -6 106 66 774 154 31 15 chr6 40547708 40547838 -141867404 + FLAM_C SINE Alu 2 133 0 487 125 33 150 chr6 40547838 40547920 -141867322 - HY1 scRNA scRNA -46 66 1 2180 94 7 0 chr6 40547920 40548219 -141867023 - AluSp SINE Alu -12 301 1 2407 70 0 0 chr6 40548233 40548534 -141866708 - AluY SINE Alu -10 301 1 1792 271 64 17 chr6 40548563 40549202 -141866040 + L1MC4a LINE L1 5264 5932 -1876 21 0 0 0 chr6 40549205 40549226 -141866016 + AT_rich Low_complexity Low_complexity 1 21 0 1348 146 0 107 chr6 40549245 40549352 -141865890 + AluJo SINE Alu 28 145 -167 1726 172 10 3 chr6 40549352 40549648 -141865594 - AluSx SINE Alu -14 298 1 1348 146 0 107 chr6 40549648 40549848 -141865394 + AluJo SINE Alu 145 302 -10 2181 112 0 0 chr6 40550090 40550394 -141864848 + AluSx SINE Alu 1 304 -8 415 160 235 71 chr6 40550915 40551153 -141864089 + L1M3 LINE L1 5066 5342 -804 779 160 0 33 chr6 40551153 40551417 -141863825 + AluJb SINE Alu 2 311 -1 448 200 58 26 chr6 40551417 40551572 -141863670 + L1M3 LINE L1 5332 5491 -689 1994 95 20 14 chr6 40551574 40551869 -141863373 + AluSx SINE Alu 1 297 -15 439 259 0 67 chr6 40551912 40552047 -141863195 + L1ME2 LINE L1 6002 6127 -37 1975 106 0 45 chr6 40552051 40552188 -141863054 + AluSq SINE Alu 1 143 -170 2253 87 0 3 chr6 40552188 40552486 -141862756 + AluSg SINE Alu 1 297 -13 1975 106 0 45 chr6 40552486 40552660 -141862582 + AluSq SINE Alu 143 298 -15 1535 184 13 26 chr6 40552667 40552977 -141862265 + AluJo SINE Alu 6 311 -1 609 244 45 0 chr6 40552977 40553133 -141862109 - MER41D LTR ERV1 0 557 395 2246 92 13 0 chr6 40553146 40553452 -141861790 - AluSq SINE Alu -2 311 2 864 201 0 0 chr6 40553458 40553612 -141861630 - AluJb SINE Alu -14 298 145 2070 115 0 3 chr6 40553621 40553917 -141861325 - AluSx SINE Alu -17 295 1 3484 174 22 13 chr6 40553918 40554544 -141860698 - LTR27 LTR ERV1 -3 633 2 888 152 8 0 chr6 40554563 40554695 -141860547 - FLAM_C SINE Alu 0 133 1 2209 86 3 3 chr6 40554700 40555004 -141860238 - AluSq SINE Alu -9 304 1 198 71 0 0 chr6 40555004 40555032 -141860210 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2053 82 11 0 chr6 40555032 40555299 -141859943 - AluSg SINE Alu -30 280 11 379 71 36 0 chr6 40555332 40555388 -141859854 - L1PA3 LINE L1 -3 6152 6095 359 83 0 0 chr6 40555388 40555436 -141859806 - MER41D LTR ERV1 -509 48 1 1841 222 113 7 chr6 40555528 40555970 -141859272 + L1MC4a LINE L1 6440 6928 -880 2114 91 3 58 chr6 40555974 40556304 -141858938 + AluSx SINE Alu 1 312 0 1211 214 3 50 chr6 40556314 40556617 -141858625 + AluJo SINE Alu 7 295 -17 2030 98 3 14 chr6 40556620 40556933 -141858309 + AluSc SINE Alu 1 310 0 1761 216 146 35 chr6 40556933 40557107 -141858135 + L1MC4 LINE L1 7002 7155 -887 1957 115 34 3 chr6 40557107 40557402 -141857840 + AluSx SINE Alu 1 304 -8 1761 216 146 35 chr6 40557402 40557699 -141857543 + L1MC4 LINE L1 7155 7418 -624 1191 187 0 136 chr6 40557699 40558031 -141857211 - AluY SINE Alu -14 287 1 1761 216 146 35 chr6 40558031 40558217 -141857025 + L1MC4 LINE L1 7418 7733 -309 793 244 0 0 chr6 40558219 40558375 -141856867 - MLT1D LTR MaLR 0 505 350 2195 113 3 0 chr6 40558407 40558699 -141856543 - AluSq SINE Alu -20 293 1 280 231 380 0 chr6 40558701 40558822 -141856420 + L1MC4 LINE L1 7871 8037 -5 318 310 38 39 chr6 40558974 40559170 -141856072 - MIR SINE MIR -46 216 25 825 232 116 93 chr6 40559263 40559387 -141855855 - MLT1J2 LTR MaLR 0 450 330 1517 132 9 0 chr6 40559387 40559600 -141855642 - AluJb SINE Alu -13 299 85 825 232 116 93 chr6 40559600 40559874 -141855368 - MLT1J2 LTR MaLR -120 330 38 2258 101 0 7 chr6 40559874 40560185 -141855057 + AluSq SINE Alu 1 309 0 825 232 116 93 chr6 40560185 40560224 -141855018 - MLT1J2 LTR MaLR -412 38 1 313 230 146 30 chr6 40560224 40560389 -141854853 + MIR SINE MIR 77 260 -2 1692 164 38 0 chr6 40560390 40560562 -141854680 - AluJb SINE Alu -8 304 115 249 57 0 0 chr6 40560562 40560597 -141854645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1692 164 38 0 chr6 40560597 40560717 -141854525 - AluJb SINE Alu -197 115 1 1659 77 39 0 chr6 40561604 40561811 -141853431 + AluSc SINE Alu 1 215 -94 189 94 0 0 chr6 40561873 40561905 -141853337 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1517 159 3 102 chr6 40561905 40562067 -141853175 - AluSq SINE Alu -17 286 168 2113 120 0 23 chr6 40562067 40562367 -141852875 - AluSx SINE Alu -19 293 1 1517 159 3 102 chr6 40562367 40562519 -141852723 - AluSq SINE Alu -135 168 3 1917 130 51 0 chr6 40562680 40562973 -141852269 + AluSg SINE Alu 2 309 -1 2449 81 0 3 chr6 40563288 40563597 -141851645 - AluY SINE Alu -3 308 1 247 274 0 0 chr6 40563623 40563696 -141851546 + MIR SINE MIR 124 196 -66 348 167 13 103 chr6 40564241 40564319 -141850923 + AluJ/FLAM SINE Alu 1 58 -244 245 73 0 24 chr6 40564436 40564477 -141850765 + Alu SINE Alu 264 303 -5 2255 96 3 32 chr6 40564514 40564826 -141850416 - AluSg SINE Alu -7 303 1 1634 275 49 45 chr6 40564847 40565114 -141850128 + L1MB4 LINE L1 3213 3477 -2669 1535 158 121 0 chr6 40565114 40565386 -141849856 - AluJb SINE Alu -7 305 1 1634 275 49 45 chr6 40565386 40565879 -141849363 + L1MB4 LINE L1 3477 3976 -2170 879 212 58 5 chr6 40565879 40566127 -141849115 + MLT1D LTR MaLR 7 298 -207 * 1029 245 112 51 chr6 40566125 40566456 -141848786 + MLT1D LTR MaLR 148 498 -7 762 199 33 28 chr6 40566448 40566629 -141848613 + MLT1D LTR MaLR 324 505 0 * 2041 200 34 30 chr6 40566629 40567028 -141848214 + L1MB4 LINE L1 3976 4379 -1767 2205 151 42 23 chr6 40567028 40567458 -141847784 + L1MA10 LINE L1 5896 6333 -1 2041 200 34 30 chr6 40567458 40567562 -141847680 + L1MB4 LINE L1 4379 4481 -1665 283 236 0 0 chr6 40567651 40567706 -141847536 - HUERS-P1 LTR ERV1 -728 5535 5481 1957 114 63 0 chr6 40567711 40567982 -141847260 + AluSq SINE Alu 1 288 -25 218 93 0 23 chr6 40567985 40568028 -141847214 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2038 121 37 17 chr6 40568029 40568327 -141846915 + AluSx SINE Alu 1 304 -8 6086 208 78 26 chr6 40568328 40568857 -141846385 + L1MB5 LINE L1 3271 3771 -2375 2597 62 0 10 chr6 40568857 40569165 -141846077 + AluY SINE Alu 1 305 -6 6086 208 78 26 chr6 40569165 40569251 -141845991 + L1MB5 LINE L1 3771 3851 -2295 2047 152 0 9 chr6 40569251 40569566 -141845676 + AluJb SINE Alu 1 312 0 6086 208 78 26 chr6 40569566 40570591 -141844651 + L1MB5 LINE L1 3851 4998 -1148 502 207 6 155 chr6 40570588 40570762 -141844480 + L1MB5 LINE L1 5581 5728 -446 * 1873 183 83 8 chr6 40570852 40571250 -141843992 + L1MB5 LINE L1 5745 6172 -2 312 275 154 13 chr6 40575813 40575962 -141839280 - MIR3 SINE MIR 0 208 39 281 220 51 0 chr6 40576029 40576088 -141839154 + L1ME4a LINE L1 5975 6036 -85 21 0 0 0 chr6 40576116 40576137 -141839105 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 20 0 chr6 40576244 40576546 -141838696 + AluSq SINE Alu 1 308 -5 963 228 15 10 chr6 40577686 40577888 -141837354 + LTR41 LTR ERVL 3 205 -568 257 174 22 0 chr6 40577899 40577945 -141837297 + LTR41 LTR ERVL 713 759 -14 2027 257 25 94 chr6 40578026 40578203 -141837039 + ERVL LTR ERVL 2848 3036 -2728 1603 168 37 44 chr6 40578203 40578500 -141836742 - AluJo SINE Alu -17 295 1 2027 257 25 94 chr6 40578500 40578512 -141836730 + ERVL LTR ERVL 3036 3047 -2717 1709 166 7 27 chr6 40578512 40578807 -141836435 - AluJo SINE Alu -23 289 1 2027 257 25 94 chr6 40578807 40579327 -141835915 + ERVL LTR ERVL 3047 3509 -2255 4463 166 69 26 chr6 40579335 40579555 -141835687 + L1MB4 LINE L1 4767 4976 -1204 339 24 0 0 chr6 40579555 40579596 -141835646 + L1PA6 LINE L1 6107 6147 -7 4463 166 69 26 chr6 40579596 40579624 -141835618 + L1MB4 LINE L1 4976 5001 -1179 2193 106 3 10 chr6 40579624 40579927 -141835315 + AluSx SINE Alu 12 312 0 4463 166 69 26 chr6 40579927 40580876 -141834366 + L1MB4 LINE L1 5001 6179 -1 26 0 0 0 chr6 40580883 40580909 -141834333 + AT_rich Low_complexity Low_complexity 1 26 0 3413 260 76 29 chr6 40580909 40581364 -141833878 + ERVL LTR ERVL 4287 4719 -1045 1825 195 3 0 chr6 40581364 40581671 -141833571 - AluJb SINE Alu -4 308 1 3413 260 76 29 chr6 40581671 40582311 -141832931 + ERVL LTR ERVL 4719 5433 -331 990 201 68 57 chr6 40582591 40582726 -141832516 + LTR41 LTR ERVL 1 133 -640 2522 207 67 23 chr6 40582726 40583290 -141831952 - MLT1E LTR MaLR -4 589 1 990 201 68 57 chr6 40583290 40583418 -141831824 + LTR41 LTR ERVL 133 267 -506 526 205 26 95 chr6 40583484 40583674 -141831568 + LTR41 LTR ERVL 591 767 -6 339 293 83 8 chr6 40584319 40584452 -141830790 + L2 LINE L2 2323 2465 -849 1721 174 3 29 chr6 40584486 40584796 -141830446 - AluJb SINE Alu -10 302 1 3624 165 26 20 chr6 40584796 40585741 -141829501 + L1MC1 LINE L1 4873 5811 -522 1994 116 0 0 chr6 40585741 40585999 -141829243 + AluSx SINE Alu 38 295 -17 2265 111 0 7 chr6 40585999 40586329 -141828913 + AluSx SINE Alu 1 312 0 3624 165 26 20 chr6 40586329 40586446 -141828796 + L1MC1 LINE L1 5810 5941 -392 842 179 95 18 chr6 40586447 40586615 -141828627 - AluSq SINE Alu -132 181 1 207 250 238 0 chr6 40586620 40586700 -141828542 + L2 LINE L2 2590 2688 -626 327 329 57 73 chr6 40586905 40587276 -141827966 + L2 LINE L2 2904 3268 -4 1828 164 10 30 chr6 40587898 40588196 -141827046 - AluJb SINE Alu -20 292 1 2310 98 0 7 chr6 40588223 40588519 -141826723 + AluSc SINE Alu 1 294 -15 648 247 108 132 chr6 40588813 40588862 -141826380 + MLT1F LTR MaLR 1 50 -492 1368 157 88 48 chr6 40588862 40588987 -141826255 + MER2 DNA MER2_type 1 120 -224 2346 88 20 7 chr6 40588987 40589292 -141825950 - AluSc SINE Alu 0 309 1 1368 157 88 48 chr6 40589292 40589497 -141825745 + MER2 DNA MER2_type 120 344 0 648 247 108 132 chr6 40589497 40589583 -141825659 + MLT1F LTR MaLR 50 136 -406 2360 81 17 0 chr6 40589583 40589880 -141825362 + AluSp SINE Alu 1 302 -11 648 247 108 132 chr6 40589880 40590218 -141825024 + MLT1F LTR MaLR 136 463 -79 1129 172 221 0 chr6 40590218 40590462 -141824780 + AluJo SINE Alu 2 299 -3 648 247 108 132 chr6 40590462 40590541 -141824701 + MLT1F LTR MaLR 463 542 0 504 228 16 0 chr6 40591895 40592022 -141823220 + L1MC5 LINE L1 7797 7925 -36 5785 80 39 28 chr6 40592134 40592984 -141822258 + L1MA3 LINE L1 5447 6305 0 2289 91 13 32 chr6 40592999 40593308 -141821934 + AluSx SINE Alu 1 303 -9 1862 76 106 0 chr6 40596033 40596297 -141818945 + AluSx SINE Alu 3 294 -18 2367 86 3 0 chr6 40596300 40596601 -141818641 + AluSp SINE Alu 1 302 -11 2262 99 3 0 chr6 40597867 40598159 -141817083 + AluSx SINE Alu 1 293 -19 442 117 52 0 chr6 40598203 40598280 -141816962 + FLAM_C SINE Alu 63 143 0 2101 145 0 0 chr6 40598647 40598944 -141816298 - AluJb SINE Alu -15 297 1 367 255 28 0 chr6 40599365 40599471 -141815771 - MIR SINE MIR -57 151 43 553 254 166 60 chr6 40599982 40600380 -141814862 + L2 LINE L2 2873 3312 -1 1140 149 21 54 chr6 40601883 40602125 -141813117 - L1MB4 LINE L1 0 6180 5947 280 236 109 0 chr6 40602966 40603081 -141812161 + MIR SINE MIR 6 133 -75 187 310 0 46 chr6 40603326 40603413 -141811829 - L2 LINE L2 -1005 2309 2227 519 266 106 18 chr6 40603445 40603671 -141811571 - MIR SINE MIR -11 251 6 606 270 68 22 chr6 40603888 40604110 -141811132 - MIR SINE MIR 0 262 31 367 263 106 25 chr6 40604385 40604545 -141810697 + MLT1L LTR MaLR 108 280 -335 228 297 39 39 chr6 40604756 40604884 -141810358 + L2 LINE L2 3144 3271 -1 2567 58 7 0 chr6 40605238 40605546 -141809696 - AluY SINE Alu -1 310 1 537 180 73 20 chr6 40605896 40605912 -141809330 - L1MA10 LINE L1 0 6334 6319 1027 220 108 4 chr6 40605912 40606153 -141809089 - L1ME1 LINE L1 -5 6230 5965 1796 135 46 104 chr6 40606153 40606567 -141808675 - MLT1B LTR MaLR 0 390 1 2719 199 43 0 chr6 40606567 40607130 -141808112 - L1ME1 LINE L1 -261 5972 5386 877 142 0 0 chr6 40607150 40607277 -141807965 + FLAM_C SINE Alu 1 127 -6 2071 139 18 3 chr6 40607282 40607621 -141807621 - L1MC1 LINE L1 0 6333 5990 2211 122 0 16 chr6 40607663 40607975 -141807267 - AluSx SINE Alu -5 307 1 5793 221 84 43 chr6 40607979 40609142 -141806100 - L1ME1 LINE L1 -2782 3433 2318 1815 113 8 0 chr6 40609142 40609408 -141805834 - L1MB2 LINE L1 0 6171 5904 5793 221 84 43 chr6 40609408 40609902 -141805340 - L1ME1 LINE L1 -3897 2318 1845 1930 170 0 13 chr6 40609902 40610214 -141805028 - AluJb SINE Alu -4 308 1 5793 221 84 43 chr6 40610214 40611026 -141804216 - L1ME1 LINE L1 -4370 1845 1067 2272 102 0 19 chr6 40611026 40611341 -141803901 - AluSc SINE Alu 0 309 1 5793 221 84 43 chr6 40611341 40611573 -141803669 - L1ME1 LINE L1 -5148 1067 846 2091 74 93 4 chr6 40611573 40611843 -141803399 + AluY SINE Alu 1 294 -17 5793 221 84 43 chr6 40611843 40611858 -141803384 - L1ME1 LINE L1 -5369 846 833 1718 169 0 36 chr6 40611858 40612165 -141803077 + AluJb SINE Alu 1 296 -16 5793 221 84 43 chr6 40612165 40612672 -141802570 - L1ME1 LINE L1 -5382 833 128 236 217 9 28 chr6 40612678 40612784 -141802458 + CT-rich Low_complexity Low_complexity 3 106 0 344 197 0 0 chr6 40612790 40612851 -141802391 - L1ME1 LINE L1 -6302 94 34 2036 126 36 0 chr6 40612996 40613273 -141801969 + AluSx SINE Alu 1 287 -25 408 20 0 0 chr6 40613273 40613322 -141801920 + (CA)n Simple_repeat Simple_repeat 2 50 0 2021 126 42 0 chr6 40613347 40613632 -141801610 - AluSx SINE Alu -15 297 1 186 43 0 0 chr6 40614226 40614249 -141800993 + (TAA)n Simple_repeat Simple_repeat 2 24 0 806 292 58 12 chr6 40614249 40614492 -141800750 - MIR SINE MIR -8 254 1 220 200 13 107 chr6 40614492 40614542 -141800700 + L2 LINE L2 3229 3271 -1 494 281 79 6 chr6 40615891 40616055 -141799187 + MIR SINE MIR 40 215 -47 216 267 47 127 chr6 40616510 40616660 -141798582 + MIR3 SINE MIR 5 142 -66 604 195 18 18 chr6 40616901 40617014 -141798228 - MER81 DNA DNA -1 113 1 222 331 113 8 chr6 40617124 40617257 -141797985 + MIR3 SINE MIR 35 181 -27 198 0 0 0 chr6 40618320 40618342 -141796900 + (A)n Simple_repeat Simple_repeat 1 22 0 270 308 41 62 chr6 40618376 40618571 -141796671 + MIR SINE MIR 26 216 -46 232 247 39 26 chr6 40618745 40618822 -141796420 + L2 LINE L2 3195 3272 0 382 212 133 40 chr6 40618852 40619003 -141796239 + MIR SINE MIR 21 185 -77 626 257 18 35 chr6 40619016 40619187 -141796055 - MIR SINE MIR -8 254 87 395 269 28 0 chr6 40620441 40620549 -141794693 - MER94 DNA DNA -1 133 23 370 219 0 0 chr6 40620554 40620618 -141794624 - MIR SINE MIR -152 110 47 463 244 92 8 chr6 40621140 40621271 -141793971 - MIR3 SINE MIR -34 174 33 279 296 174 8 chr6 40621490 40621622 -141793620 - L3 LINE CR1 -93 1484 1331 622 268 35 40 chr6 40621730 40621958 -141793284 + MIR SINE MIR 22 248 -14 1739 150 27 20 chr6 40621973 40622273 -141792969 - AluJb SINE Alu -10 302 1 181 333 80 47 chr6 40622276 40622552 -141792690 - L3 LINE CR1 -544 1033 749 519 271 69 0 chr6 40622927 40623071 -141792171 - MIR3 SINE MIR -2 206 53 240 238 74 0 chr6 40623351 40623416 -141791826 - MIR SINE MIR -67 141 70 226 254 0 0 chr6 40623468 40623527 -141791715 + MIR SINE MIR 135 193 -69 947 142 0 9 chr6 40623701 40623928 -141791314 + (CCA)n Simple_repeat Simple_repeat 1 224 0 304 108 62 0 chr6 40623913 40623978 -141791264 + (CACCAT)n Simple_repeat Simple_repeat 3 71 0 * 208 285 50 108 chr6 40624907 40625286 -141789956 - L2 LINE L2 -86 3186 2830 552 299 90 10 chr6 40625404 40625605 -141789637 + MIR SINE MIR 46 262 0 1248 265 29 27 chr6 40625680 40626092 -141789150 - MLT1J LTR MaLR 0 511 99 2372 99 3 0 chr6 40626119 40626422 -141788820 - AluSx SINE Alu -8 304 1 647 188 87 0 chr6 40626423 40626572 -141788670 + MER20 DNA MER1_type 57 218 -1 257 231 46 0 chr6 40626588 40626653 -141788589 - MLT1J LTR MaLR -443 68 1 625 304 52 35 chr6 40627220 40627450 -141787792 - MIR SINE MIR -15 247 14 306 240 13 13 chr6 40627609 40627684 -141787558 - MIR SINE MIR -115 147 73 526 232 177 60 chr6 40628438 40628545 -141786697 + L1MC4 LINE L1 7465 7558 -484 2502 126 21 42 chr6 40628545 40629022 -141786220 + L1MB7 LINE L1 5699 6165 -19 526 232 177 60 chr6 40629022 40629123 -141786119 + L1MC4 LINE L1 7558 7646 -396 2045 129 0 7 chr6 40629123 40629401 -141785841 + AluSx SINE Alu 1 276 -36 526 232 177 60 chr6 40629401 40629575 -141785667 + L1MC4 LINE L1 7646 7893 -149 2465 86 3 0 chr6 40629697 40629998 -141785244 + AluSg SINE Alu 1 302 -8 856 203 101 18 chr6 40629998 40630120 -141785122 + MIR SINE MIR 22 132 -130 297 0 0 0 chr6 40630120 40630153 -141785089 + (ATG)n Simple_repeat Simple_repeat 2 34 0 856 203 101 18 chr6 40630153 40630247 -141784995 + MIR SINE MIR 132 256 -6 295 278 35 17 chr6 40630564 40630679 -141784563 - MIR SINE MIR -69 139 23 467 300 73 0 chr6 40630922 40631072 -141784170 - MIR SINE MIR -98 164 4 1051 206 0 0 chr6 40631178 40631353 -141783889 - FAM SINE Alu 0 175 1 249 227 0 15 chr6 40631354 40631420 -141783822 + Charlie7 DNA MER1_type 2457 2521 -91 383 246 0 36 chr6 40631674 40631784 -141783458 + MLT1L LTR MaLR 387 492 -123 756 264 156 38 chr6 40632440 40632883 -141782359 - MLT1J LTR MaLR -13 498 4 189 321 138 9 chr6 40632909 40633018 -141782224 + MIR3 SINE MIR 10 132 -76 1780 193 92 7 chr6 40634248 40634672 -141780570 - L1ME3A LINE L1 -9 6161 5702 2571 167 45 4 chr6 40634724 40635210 -141780032 - L1MB4 LINE L1 -2 6178 5673 499 323 70 22 chr6 40635217 40635446 -141779796 - MIR SINE MIR -11 251 12 277 313 31 0 chr6 40636184 40636280 -141778962 - L2 LINE L2 -14 3299 3201 398 53 18 0 chr6 40636830 40636887 -141778355 + (TA)n Simple_repeat Simple_repeat 2 59 0 2160 33 4 0 chr6 40636887 40637129 -141778113 - AluSc SINE Alu 0 309 67 413 289 147 33 chr6 40637540 40637934 -141777308 - L1ME LINE L1 -372 5794 5365 506 268 82 55 chr6 40638156 40638339 -141776903 + MIR SINE MIR 63 250 -12 660 191 0 16 chr6 40638502 40638628 -141776614 - MER20 DNA MER1_type -3 216 93 372 71 0 0 chr6 40638629 40638685 -141776557 + (CA)n Simple_repeat Simple_repeat 2 57 0 209 353 9 35 chr6 40638823 40638939 -141776303 + L2 LINE L2 2421 2533 -781 329 159 48 0 chr6 40639130 40639193 -141776049 + L2 LINE L2 3188 3253 -19 280 297 76 62 chr6 40639953 40640098 -141775144 + MIR3 SINE MIR 1 147 -61 24 0 0 0 chr6 40640789 40640813 -141774429 + AT_rich Low_complexity Low_complexity 1 24 0 798 256 115 50 chr6 40640829 40641039 -141774203 - MLT1I LTR MaLR -1 408 213 2006 136 14 7 chr6 40641039 40641334 -141773908 + AluJo SINE Alu 2 298 -14 798 256 115 50 chr6 40641334 40641506 -141773736 - MLT1I LTR MaLR -196 213 1 248 341 131 5 chr6 40641737 40641951 -141773291 - L1MC4a LINE L1 -1884 5924 5684 1944 159 3 10 chr6 40642125 40642421 -141772821 - AluJb SINE Alu -18 294 1 337 346 39 16 chr6 40642433 40642560 -141772682 - L2 LINE L2 0 3272 3143 2545 68 0 13 chr6 40642595 40642902 -141772340 - AluY SINE Alu -8 303 1 188 220 0 68 chr6 40643285 40643344 -141771898 - L2 LINE L2 -841 2473 2419 449 179 0 0 chr6 40643543 40643621 -141771621 + L1ME1 LINE L1 6044 6121 -45 723 149 58 0 chr6 40643625 40643746 -141771496 + MER1B DNA MER1_type 3 130 -167 501 182 0 87 chr6 40643884 40643946 -141771296 - L1ME1 LINE L1 -1 6333 6267 2233 142 21 12 chr6 40643946 40644278 -141770964 - MER1B DNA MER1_type 0 337 3 501 182 0 87 chr6 40644278 40644360 -141770882 - L1ME1 LINE L1 -67 6267 6044 874 272 49 10 chr6 40645084 40645416 -141769826 + L3 LINE CR1 1186 1572 -5 205 287 96 11 chr6 40645456 40645550 -141769692 - L2 LINE L2 -11 3302 3201 358 194 0 0 chr6 40647087 40647149 -141768093 + MIR3 SINE MIR 93 154 -54 2183 134 0 0 chr6 40647955 40648254 -141766988 + AluSg SINE Alu 3 301 -9 407 294 151 5 chr6 40648522 40648740 -141766502 - MIR SINE MIR 0 262 13 2134 131 3 3 chr6 40648850 40649162 -141766080 - AluSx SINE Alu 0 312 1 779 223 57 10 chr6 40649270 40649463 -141765779 - MER58A DNA MER1_type -15 209 8 2365 75 10 3 chr6 40649901 40650195 -141765047 - AluY SINE Alu -15 296 1 849 41 0 0 chr6 40650211 40650308 -141764934 - AluY SINE Alu -214 97 1 373 289 68 79 chr6 40650386 40650723 -141764519 - L1MDa LINE L1 -3427 3113 2781 1641 113 108 0 chr6 40650723 40650954 -141764288 - AluSx SINE Alu -56 256 1 373 289 68 79 chr6 40650954 40651072 -141764170 - L1MDa LINE L1 -3759 2781 2663 344 248 60 53 chr6 40651125 40651258 -141763984 - L1MDa LINE L1 -3963 2577 2444 613 243 185 58 chr6 40651635 40652274 -141762968 - HAL1 LINE L1 -745 1762 1043 975 160 112 0 chr6 40652403 40652591 -141762651 - MER3 DNA MER1_type 0 209 1 2337 92 9 25 chr6 40652993 40653310 -141761932 - AluSx SINE Alu 0 312 1 209 324 122 7 chr6 40654184 40654332 -141760910 - MIR SINE MIR -52 210 46 700 274 22 0 chr6 40654915 40655094 -141760148 - L2 LINE L2 0 3313 3131 2362 103 0 3 chr6 40655125 40655427 -141759815 + AluSq SINE Alu 1 301 -12 324 367 22 22 chr6 40655510 40655736 -141759506 - L2 LINE L2 -388 2926 2701 863 113 14 14 chr6 40655797 40655939 -141759303 + MER20 DNA MER1_type 30 171 -48 281 318 35 0 chr6 40655968 40656053 -141759189 - L2 LINE L2 -608 2706 2619 199 109 0 43 chr6 40658136 40658182 -141757060 + (TTCTCC)n Simple_repeat Simple_repeat 3 46 0 2218 101 0 3 chr6 40658206 40658513 -141756729 - AluY SINE Alu 0 311 1 182 335 145 13 chr6 40658731 40658883 -141756359 + L2 LINE L2 2800 2971 -343 2380 73 6 19 chr6 40659574 40659888 -141755354 + AluSg SINE Alu 1 310 0 570 178 104 6 chr6 40660266 40660429 -141754813 - Charlie2 DNA MER1_type -2 2860 2682 990 83 8 23 chr6 40660429 40660562 -141754680 - AluSg/x SINE Alu -18 294 164 405 334 79 33 chr6 40660596 40660922 -141754320 - L1 LINE L1 -2761 3385 3072 191 283 33 0 chr6 40661838 40661864 -141753378 + L2 LINE L2 3194 3255 -17 220 118 0 0 chr6 40661864 40661898 -141753344 + MIR SINE MIR 218 251 -11 2524 80 3 0 chr6 40662230 40662531 -141752711 + AluSp SINE Alu 1 302 -11 365 267 61 23 chr6 40663900 40664031 -141751211 - L2 LINE L2 -1 3271 3136 1760 162 18 3 chr6 40664142 40664426 -141750816 - AluJo SINE Alu -13 299 12 180 324 43 54 chr6 40664733 40664918 -141750324 - L2 LINE L2 -897 2417 2235 285 323 21 0 chr6 40664920 40665013 -141750229 - L2 LINE L2 -1022 2292 2198 414 294 63 8 chr6 40665101 40665227 -141750015 - MIR SINE MIR -110 152 20 549 299 167 5 chr6 40666537 40666758 -141748484 + MIR SINE MIR 2 258 -4 2158 110 45 0 chr6 40667098 40667390 -141747852 - AluSx SINE Alu -7 305 1 640 261 107 14 chr6 40667435 40667650 -141747592 - MIR SINE MIR 0 262 28 383 323 19 32 chr6 40667679 40667837 -141747405 - MIR SINE MIR -102 160 5 220 260 78 13 chr6 40667845 40667922 -141747320 - MIR SINE MIR -92 170 89 187 250 62 0 chr6 40669064 40669112 -141746130 - MIR3 SINE MIR -10 198 148 204 200 117 33 chr6 40669246 40669306 -141745936 - MIR3 SINE MIR -52 156 92 532 119 10 10 chr6 40670676 40670777 -141744465 + (GGA)n Simple_repeat Simple_repeat 3 103 0 242 267 0 0 chr6 40670785 40670845 -141744397 + GA-rich Low_complexity Low_complexity 2 61 0 27 87 0 0 chr6 40671112 40671181 -141744061 + GC_rich Low_complexity Low_complexity 1 69 0 225 119 0 0 chr6 40674081 40674123 -141741119 + (G)n Simple_repeat Simple_repeat 1 42 0 228 263 152 30 chr6 40677060 40677159 -141738083 + MIR3 SINE MIR 14 124 -84 405 255 21 0 chr6 40678431 40678525 -141736717 + L2 LINE L2 3218 3313 0 1750 184 3 23 chr6 40679763 40680068 -141735174 + AluJo SINE Alu 1 299 -13 598 280 74 37 chr6 40680068 40680311 -141734931 - MIR SINE MIR -5 257 6 433 248 52 52 chr6 40680351 40680504 -141734738 - MER5B DNA MER1_type -25 153 1 2330 118 0 10 chr6 40681204 40681518 -141733724 + AluSx SINE Alu 1 311 -1 807 157 176 0 chr6 40681789 40681942 -141733300 + MER3 DNA MER1_type 20 199 -10 369 289 155 11 chr6 40681994 40682181 -141733061 - MIR SINE MIR -16 246 33 234 333 94 0 chr6 40682674 40682770 -141732472 - MER5A DNA MER1_type -75 114 10 508 258 103 7 chr6 40682952 40683107 -141732135 + MER5B DNA MER1_type 5 174 -4 2385 84 17 0 chr6 40683339 40683635 -141731607 - AluSg SINE Alu -8 302 2 369 218 27 55 chr6 40684663 40684773 -141730469 + MER91A DNA MER1_type 90 196 0 391 296 121 25 chr6 40685007 40685287 -141729955 + L1ME LINE L1 5491 5797 -324 525 313 15 41 chr6 40685894 40685985 -141729257 + MIR SINE MIR 58 150 -112 1459 173 75 44 chr6 40685985 40686280 -141728962 + AluJo SINE Alu 1 304 -8 525 313 15 41 chr6 40686280 40686383 -141728859 + MIR SINE MIR 150 247 -15 192 324 36 54 chr6 40687273 40687384 -141727858 + MIR3 SINE MIR 51 159 -49 572 252 25 44 chr6 40689090 40689249 -141725993 + L2 LINE L2 3112 3267 -5 182 290 62 80 chr6 40689275 40689451 -141725791 + L2 LINE L2 3099 3271 -1 209 311 0 33 chr6 40690679 40690769 -141724473 + CT-rich Low_complexity Low_complexity 4 90 0 204 361 38 8 chr6 40691367 40691500 -141723742 - L3b LINE CR1 -294 1289 1153 752 243 84 17 chr6 40692826 40693065 -141722177 + MIR SINE MIR 7 261 -1 191 344 8 56 chr6 40693740 40693865 -141721377 - L3b LINE CR1 -187 1396 1278 707 224 219 0 chr6 40695331 40695541 -141719701 + MIR SINE MIR 7 262 0 251 122 20 0 chr6 40696434 40696483 -141718759 + GA-rich Low_complexity Low_complexity 1 50 0 337 350 121 6 chr6 40696851 40697008 -141718234 - MER91A DNA MER1_type -21 175 1 678 145 41 43 chr6 40697758 40697952 -141717290 - L1MB1 LINE L1 0 6168 5981 609 262 112 19 chr6 40703163 40703377 -141711865 - MIR SINE MIR 0 262 29 2226 105 7 13 chr6 40703552 40703858 -141711384 + AluSq SINE Alu 1 304 -9 2259 108 0 10 chr6 40704011 40704318 -141710924 + AluSq SINE Alu 1 304 -9 187 238 0 24 chr6 40704623 40704665 -141710577 + MIR SINE MIR 20 60 -148 184 152 0 0 chr6 40704665 40704698 -141710544 + L2 LINE L2 3259 3291 -22 1287 259 189 11 chr6 40704706 40705350 -141709892 - L2 LINE L2 -239 3074 2297 192 77 0 0 chr6 40707567 40707593 -141707649 + (T)n Simple_repeat Simple_repeat 1 26 0 2454 94 10 0 chr6 40708001 40708309 -141706933 - AluSx SINE Alu -1 311 1 21 0 0 0 chr6 40709900 40709921 -141705321 + AT_rich Low_complexity Low_complexity 1 21 0 217 208 83 0 chr6 40710629 40710677 -141704565 - L2 LINE L2 -3 3269 3218 339 145 0 0 chr6 40711206 40711268 -141703974 + Charlie2 DNA MER1_type 72 133 -2649 2136 130 7 0 chr6 40711270 40711569 -141703673 + AluSx SINE Alu 1 301 -11 1347 91 0 0 chr6 40711570 40711745 -141703497 + AluSq SINE Alu 136 310 -3 2461 90 0 0 chr6 40711746 40712047 -141703195 + AluSg SINE Alu 1 301 -9 458 183 52 26 chr6 40712095 40712210 -141703032 + Charlie2 DNA MER1_type 165 282 -2500 2675 202 126 7 chr6 40712231 40713462 -141701780 + Charlie2a DNA MER1_type 902 2313 -549 998 167 90 56 chr6 40713531 40713664 -141701578 + Charlie2a DNA MER1_type 2527 2654 -208 2265 100 7 0 chr6 40713664 40713955 -141701287 - AluSg SINE Alu -17 293 1 998 167 90 56 chr6 40713955 40713980 -141701262 + Charlie2a DNA MER1_type 2654 2677 -185 2085 101 31 14 chr6 40713980 40714266 -141700976 + AluSc SINE Alu 1 291 -18 998 167 90 56 chr6 40714266 40714429 -141700813 + Charlie2a DNA MER1_type 2677 2860 -2 2367 73 6 19 chr6 40714807 40715121 -141700121 - AluSg SINE Alu 0 310 1 440 270 20 20 chr6 40717511 40717663 -141697579 + MIR3 SINE MIR 57 208 0 408 288 171 36 chr6 40717851 40718073 -141697169 + MIR SINE MIR 2 253 -9 275 268 148 86 chr6 40718246 40718455 -141696787 - MIR SINE MIR 0 262 41 483 230 0 0 chr6 40718585 40718672 -141696570 - FLAM_A SINE Alu -55 87 1 1089 209 62 58 chr6 40718801 40719198 -141696044 - MER39 LTR ERV1 -41 666 219 222 360 118 0 chr6 40720526 40720605 -141694637 + L2 LINE L2 3097 3165 -107 2260 128 0 0 chr6 40720605 40720909 -141694333 - AluSx SINE Alu -8 304 1 222 360 118 0 chr6 40720909 40720982 -141694260 + L2 LINE L2 3165 3267 -5 329 255 10 10 chr6 40721332 40721434 -141693808 + L1MC5 LINE L1 7806 7907 -54 180 77 0 0 chr6 40721881 40721907 -141693335 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 2533 267 65 30 chr6 40721910 40722083 -141693159 - L2 LINE L2 -13 3300 3134 2308 116 0 0 chr6 40722083 40722393 -141692849 + AluSx SINE Alu 1 310 -2 2533 267 65 30 chr6 40722393 40723018 -141692224 - L2 LINE L2 -179 3134 2449 1829 107 12 0 chr6 40723018 40723261 -141691981 - AluSg SINE Alu -16 294 49 2533 267 65 30 chr6 40723261 40723480 -141691762 - L2 LINE L2 -864 2449 2239 320 261 104 30 chr6 40723493 40723627 -141691615 + MIR3 SINE MIR 1 144 -64 2545 59 7 0 chr6 40723652 40723957 -141691285 - AluY SINE Alu -4 307 1 1780 145 17 17 chr6 40723966 40724255 -141690987 - AluJb SINE Alu -23 289 1 337 301 78 0 chr6 40724424 40724527 -141690715 - L2 LINE L2 -1 3271 3161 1837 108 126 22 chr6 40725380 40725657 -141689585 + AluSg SINE Alu 1 306 -4 2437 95 0 0 chr6 40725857 40726162 -141689080 + AluSx SINE Alu 1 305 -7 231 264 9 45 chr6 40726601 40726711 -141688531 - 7SK RNA RNA -83 110 5 21 0 0 0 chr6 40726941 40726962 -141688280 + AT_rich Low_complexity Low_complexity 1 21 0 2300 113 7 0 chr6 40726989 40727291 -141687951 - AluSg SINE Alu -6 304 1 2243 96 10 3 chr6 40727422 40727715 -141687527 - AluSc SINE Alu -14 295 1 699 115 0 0 chr6 40727757 40727853 -141687389 + AluSg/x SINE Alu 200 295 -17 989 245 155 28 chr6 40727856 40728211 -141687031 - L1MC4a LINE L1 -1908 5900 5501 2363 96 0 3 chr6 40728251 40728553 -141686689 + AluSx SINE Alu 7 307 -5 1869 153 0 50 chr6 40728665 40728985 -141686257 + AluJo SINE Alu 1 304 -8 1594 162 0 94 chr6 40729019 40729328 -141685914 + AluJo SINE Alu 3 282 -30 405 58 0 0 chr6 40729328 40729380 -141685862 + (TG)n Simple_repeat Simple_repeat 1 52 0 993 194 43 0 chr6 40729499 40729685 -141685557 - AluJo SINE Alu -14 298 105 2363 108 0 6 chr6 40729730 40730044 -141685198 + AluSx SINE Alu 1 312 0 1984 125 0 18 chr6 40730050 40730331 -141684911 - AluSx SINE Alu -36 276 1 1611 127 0 0 chr6 40730359 40730571 -141684671 + AluSg SINE Alu 1 212 -98 712 59 0 0 chr6 40730603 40730688 -141684554 - FLAM_C SINE Alu -32 111 27 891 191 54 0 chr6 40731422 40731590 -141683652 + AluJo SINE Alu 119 295 -17 2385 93 0 7 chr6 40731731 40732033 -141683209 + AluSg SINE Alu 1 300 -10 475 347 32 32 chr6 40732497 40732748 -141682494 + L3b LINE CR1 1114 1364 -219 881 225 41 18 chr6 40732825 40733043 -141682199 + MIR SINE MIR 18 240 -22 186 239 76 65 chr6 40733054 40733146 -141682096 - MIR3 SINE MIR -5 203 111 648 200 123 12 chr6 40733303 40733473 -141681769 - MIR SINE MIR -60 202 14 25 0 0 0 chr6 40733622 40733647 -141681595 + AT_rich Low_complexity Low_complexity 1 25 0 2194 98 26 36 chr6 40733650 40733957 -141681285 - AluSq SINE Alu -9 304 1 773 265 59 17 chr6 40734343 40734581 -141680661 + MIR SINE MIR 8 255 -7 2335 94 10 10 chr6 40734706 40735014 -141680228 - AluY SINE Alu -3 308 1 1967 75 4 0 chr6 40735016 40735255 -141679987 - AluSp SINE Alu -2 311 72 210 362 87 39 chr6 40735762 40735991 -141679251 - L2 LINE L2 -373 2941 2702 2601 68 0 0 chr6 40736277 40736585 -141678657 - AluY SINE Alu -3 308 1 1672 211 10 0 chr6 40736690 40736989 -141678253 - AluJo SINE Alu -10 302 1 846 135 8 0 chr6 40737114 40737240 -141678002 + FRAM SINE Alu 42 168 -8 245 367 50 35 chr6 40737347 40737606 -141677636 - L2 LINE L2 -830 2484 2222 1686 189 3 16 chr6 40738508 40738815 -141676427 + AluJo SINE Alu 1 303 -9 363 239 80 0 chr6 40738878 40738991 -141676251 + MER53 DNA DNA 1 122 -67 705 190 33 0 chr6 40739051 40739172 -141676070 + FLAM_A SINE Alu 1 125 -8 415 118 0 0 chr6 40739228 40739296 -141675946 + MER53 DNA DNA 122 189 0 202 200 0 0 chr6 40740102 40740142 -141675100 + (CA)n Simple_repeat Simple_repeat 1 40 0 426 209 191 0 chr6 40740299 40740409 -141674833 + MER94 DNA DNA 1 131 -3 2402 105 0 6 chr6 40740938 40741252 -141673990 - AluSx SINE Alu 0 312 1 2284 119 0 7 chr6 40741256 40741559 -141673683 - AluSx SINE Alu -11 301 1 2051 163 0 0 chr6 40741559 40741860 -141673382 - AluJb SINE Alu -2 310 10 1110 198 11 48 chr6 40742255 40742523 -141672719 - MIR SINE MIR 0 262 5 723 304 102 45 chr6 40743625 40744261 -141670981 - L2 LINE L2 0 3272 2590 1895 128 37 17 chr6 40745533 40745830 -141669412 + AluJb SINE Alu 1 303 -9 482 267 68 12 chr6 40745943 40746104 -141669138 + MIR3 SINE MIR 38 207 -1 427 264 57 67 chr6 40747744 40747937 -141667305 + MIR3 SINE MIR 3 193 -15 203 305 11 11 chr6 40749299 40749394 -141665848 + C-rich Low_complexity Low_complexity 6 100 0 254 307 27 0 chr6 40750212 40750287 -141664955 + MIR SINE MIR 16 92 -116 462 281 104 18 chr6 40750942 40751106 -141664136 + MIR3 SINE MIR 23 200 -8 324 305 0 11 chr6 40751658 40751753 -141663489 + MIR3 SINE MIR 89 182 -26 357 221 171 13 chr6 40754201 40754354 -141660888 - MIR SINE MIR -48 214 32 327 313 116 48 chr6 40756054 40756322 -141658920 - L3b LINE CR1 -194 1389 1104 1676 197 0 16 chr6 40756880 40757185 -141658057 - AluJo SINE Alu -12 300 1 308 297 102 55 chr6 40757377 40757613 -141657629 + L3b LINE CR1 1174 1420 -163 288 223 179 18 chr6 40758199 40758311 -141656931 + MIR SINE MIR 23 152 -56 2407 104 0 0 chr6 40758586 40758885 -141656357 - AluSx SINE Alu -13 299 1 1804 176 14 3 chr6 40758939 40759228 -141656014 + AluJb SINE Alu 2 293 -19 363 240 83 41 chr6 40759567 40759688 -141655554 - MER5B DNA MER1_type -39 139 14 399 195 35 23 chr6 40759728 40759815 -141655427 + MIR SINE MIR 87 174 -88 212 315 27 0 chr6 40760181 40760254 -141654988 - MIR3 SINE MIR -29 179 105 1222 274 67 47 chr6 40760328 40760573 -141654669 - L2 LINE L2 -5 3308 3069 1491 174 3 93 chr6 40760573 40760709 -141654533 + AluSq SINE Alu 1 93 -220 2206 105 7 3 chr6 40760709 40761004 -141654238 + AluSq SINE Alu 1 296 -17 1491 174 3 93 chr6 40761004 40761023 -141654219 + AluSq SINE Alu 93 292 -21 1130 158 0 0 chr6 40761023 40761188 -141654054 + AluJb SINE Alu 127 291 -21 1222 274 67 47 chr6 40761188 40761519 -141653723 - L2 LINE L2 -244 3069 2737 521 130 0 0 chr6 40761836 40761905 -141653337 + AluJ/FLAM SINE Alu 9 77 -235 337 201 0 2 chr6 40761908 40761972 -141653270 - AluJ/FLAM SINE Alu -242 60 5 1245 136 0 0 chr6 40762005 40762181 -141653061 - AluJb SINE Alu -13 299 124 1045 193 0 0 chr6 40762196 40762372 -141652870 + AluJb SINE Alu 131 306 -6 442 265 151 29 chr6 40762379 40762408 -141652834 - L1ME4a LINE L1 -11 6110 6086 2027 117 3 20 chr6 40762408 40762424 -141652818 - AluSx SINE Alu -18 294 279 204 40 0 0 chr6 40762424 40762449 -141652793 + (TG)n Simple_repeat Simple_repeat 1 25 0 2027 117 3 20 chr6 40762449 40762731 -141652511 - AluSx SINE Alu -33 279 1 2384 102 0 3 chr6 40762738 40763052 -141652190 - AluSq SINE Alu 0 313 1 442 265 151 29 chr6 40763052 40763087 -141652155 - L1ME4a LINE L1 -40 6081 6052 2389 99 0 0 chr6 40763087 40763391 -141651851 + AluSq SINE Alu 1 304 -9 442 265 151 29 chr6 40763391 40763470 -141651772 - L1ME4a LINE L1 -69 6052 5984 360 221 13 0 chr6 40763470 40763547 -141651695 + MER116 DNA Mariner 3 80 0 442 265 151 29 chr6 40763547 40763631 -141651611 - L1ME4a LINE L1 -137 5984 5844 317 294 266 7 chr6 40763661 40763804 -141651438 - MIR SINE MIR -9 253 74 2117 122 0 3 chr6 40763974 40764269 -141650973 + AluSx SINE Alu 1 294 -18 445 179 66 19 chr6 40764460 40764566 -141650676 - MLT1K LTR MaLR 0 588 478 261 273 124 41 chr6 40764807 40764928 -141650314 - L2 LINE L2 -9 3263 3133 277 252 231 27 chr6 40764959 40765106 -141650136 + MIR SINE MIR 36 212 -50 784 139 7 36 chr6 40765107 40765244 -141649998 + FLAM_C SINE Alu 1 133 0 2188 113 0 0 chr6 40765249 40765622 -141649620 + AluSx SINE Alu 1 373 0 404 297 54 14 chr6 40766045 40766193 -141649049 + MIR SINE MIR 1 154 -108 479 207 283 20 chr6 40766201 40766399 -141648843 + MIR SINE MIR 13 262 0 486 266 82 13 chr6 40768707 40768865 -141646377 + MIR3 SINE MIR 31 199 -9 398 95 16 0 chr6 40770118 40770181 -141645061 - L1MB4 LINE L1 -24 6156 6093 7753 139 16 81 chr6 40770194 40770984 -141644258 - L1MA4 LINE L1 -7 6293 5453 2443 96 3 0 chr6 40770984 40771286 -141643956 + AluSq SINE Alu 1 303 -10 7753 139 16 81 chr6 40771286 40772043 -141643199 - L1MA4 LINE L1 -847 5453 4648 919 199 0 6 chr6 40772043 40772214 -141643028 - AluJo SINE Alu -7 305 136 7753 139 16 81 chr6 40772214 40772706 -141642536 - L1MA4 LINE L1 -1652 4648 4126 2297 93 0 50 chr6 40772706 40773027 -141642215 - AluSq SINE Alu -8 305 1 834 144 0 38 chr6 40773027 40773159 -141642083 - AluJo SINE Alu -171 131 5 7753 139 16 81 chr6 40773159 40773634 -141641608 - L1MA4 LINE L1 -2172 4128 3779 1669 179 45 10 chr6 40773633 40774019 -141641223 - L1MB4 LINE L1 -80 6100 5459 * 403 328 93 5 chr6 40774052 40774256 -141640986 + MIR SINE MIR 14 235 -27 542 256 30 0 chr6 40774258 40774391 -141640851 + L2 LINE L2 3177 3313 0 193 216 0 0 chr6 40774893 40774930 -141640312 + MIR SINE MIR 118 154 -108 311 299 0 17 chr6 40775091 40775268 -141639974 + (CAG)n Simple_repeat Simple_repeat 2 175 0 519 259 92 17 chr6 40775781 40775955 -141639287 + MIR SINE MIR 18 204 -58 30 27 0 0 chr6 40776020 40776057 -141639185 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr6 40776081 40776111 -141639131 + AT_rich Low_complexity Low_complexity 1 30 0 651 281 176 1 chr6 40776905 40777127 -141638115 + MIR SINE MIR 1 261 -1 205 156 0 0 chr6 40777393 40777425 -141637817 + MIR SINE MIR 83 114 -148 891 228 22 0 chr6 40778714 40778898 -141636344 + MIR SINE MIR 3 190 -72 340 324 29 0 chr6 40778968 40779070 -141636172 - MIR SINE MIR -71 191 87 254 268 186 0 chr6 40779729 40779826 -141635416 + L2 LINE L2 3158 3272 0 588 212 26 0 chr6 40779924 40780037 -141635205 - FLAM_C SINE Alu -26 117 2 416 198 148 0 chr6 40780039 40780140 -141635102 - L2 LINE L2 -6 3307 3192 1656 141 11 38 chr6 40780252 40780515 -141634727 - AluSx SINE Alu -53 259 4 2208 136 0 13 chr6 40780716 40781032 -141634210 + AluJb SINE Alu 1 312 0 238 86 52 35 chr6 40781071 40781129 -141634113 + T-rich Low_complexity Low_complexity 2 60 0 1097 107 7 0 chr6 40781146 40781286 -141633956 - AluJb SINE Alu -171 141 1 274 120 0 0 chr6 40781300 40781350 -141633892 + Charlie2 DNA MER1_type 2750 2799 -63 1238 189 14 0 chr6 40781351 40781568 -141633674 + AluJo SINE Alu 1 220 -92 22 35 0 0 chr6 40781603 40781632 -141633610 + AT_rich Low_complexity Low_complexity 1 29 0 589 165 0 0 chr6 40781650 40781747 -141633495 + AluJo SINE Alu 209 305 -7 2340 102 3 6 chr6 40781993 40782307 -141632935 - AluSq SINE Alu 0 313 1 22 0 0 0 chr6 40782550 40782572 -141632670 + AT_rich Low_complexity Low_complexity 1 22 0 2493 89 0 0 chr6 40782619 40782921 -141632321 + AluSg SINE Alu 1 302 -8 2506 75 0 0 chr6 40782934 40783227 -141632015 + AluSg SINE Alu 1 293 -17 1042 167 0 23 chr6 40783227 40783401 -141631841 + AluJb SINE Alu 134 303 -9 2553 64 0 6 chr6 40783471 40783784 -141631458 + AluY SINE Alu 1 311 0 234 111 156 0 chr6 40783927 40783972 -141631270 + MIR SINE MIR 95 146 -62 853 268 78 62 chr6 40784739 40785172 -141630070 - LTR67 LTR ERVL -4 553 114 753 197 46 20 chr6 40785176 40785328 -141629914 + AluJb SINE Alu 156 311 -1 276 355 30 10 chr6 40785366 40785566 -141629676 + L3 LINE CR1 1179 1382 -195 2215 114 7 0 chr6 40785582 40785890 -141629352 + AluSx SINE Alu 1 310 -2 255 298 0 0 chr6 40785928 40786012 -141629230 - L1ME4a LINE L1 -65 6056 5973 2070 129 6 10 chr6 40786012 40786323 -141628919 - AluSx SINE Alu 0 312 3 1192 147 0 0 chr6 40786325 40786502 -141628740 - AluSc SINE Alu -14 295 119 2636 119 9 14 chr6 40786626 40787046 -141628196 - LTR51 LTR ERV1 0 671 254 845 121 0 50 chr6 40787047 40787188 -141628054 + FLAM_C SINE Alu 10 143 0 2477 87 3 0 chr6 40787194 40787503 -141627739 + AluSp SINE Alu 1 310 -3 1243 158 47 24 chr6 40787503 40787756 -141627486 - LTR51 LTR ERV1 -412 259 1 722 282 12 2 chr6 40787764 40787992 -141627250 - L1ME4a LINE L1 -287 5834 5603 24 67 0 0 chr6 40788000 40788045 -141627197 + AT_rich Low_complexity Low_complexity 1 45 0 1701 129 8 4 chr6 40788101 40788342 -141626900 - AluY SINE Alu -12 299 58 2362 87 11 0 chr6 40788386 40788673 -141626569 + AluY SINE Alu 1 290 -21 1142 94 0 0 chr6 40788683 40788821 -141626421 + AluSq/x SINE Alu 1 138 -174 31190 82 8 11 chr6 40788823 40793295 -141621947 + L1P LINE L1 16 4476 -1670 1264 93 12 0 chr6 40793295 40793457 -141621785 - AluSg/x SINE Alu -15 295 132 11558 45 23 0 chr6 40793457 40795657 -141619585 - L1PA6 LINE L1 -2 6152 3920 459 108 0 0 chr6 40795658 40795723 -141619519 - MER49 LTR ERV1 -130 793 729 1110 52 0 22 chr6 40795723 40795857 -141619385 - AluY SINE Alu -171 140 10 1025 121 0 0 chr6 40795857 40795998 -141619244 - FLAM_C SINE Alu -1 142 2 2020 125 13 3 chr6 40796000 40796313 -141618929 - MER49 LTR ERV1 -607 316 1 7135 32 13 194 chr6 40796586 40797852 -141617390 + SVA Other Other 11 1047 -339 218 328 0 0 chr6 40798209 40798267 -141616975 + polypurine Low_complexity Low_complexity 2 59 0 2231 116 3 0 chr6 40798279 40798582 -141616660 + AluSx SINE Alu 2 305 -7 463 211 21 0 chr6 40799069 40799164 -141616078 + MIR3 SINE MIR 96 192 -16 24 0 0 0 chr6 40799396 40799420 -141615822 + GC_rich Low_complexity Low_complexity 1 24 0 1488 183 47 18 chr6 40802139 40802413 -141612829 - AluJo SINE Alu -7 305 24 2536 76 0 10 chr6 40802723 40803037 -141612205 - AluY SINE Alu 0 311 1 450 216 135 0 chr6 40804245 40804356 -141610886 + L2 LINE L2 3188 3313 0 180 0 0 0 chr6 40804443 40804463 -141610779 + (TA)n Simple_repeat Simple_repeat 2 21 0 2387 95 0 0 chr6 40804463 40804767 -141610475 - AluSq SINE Alu -9 304 1 2370 110 0 0 chr6 40804767 40805066 -141610176 - AluSq SINE Alu -14 299 1 326 191 155 0 chr6 40805069 40805153 -141610089 - L2 LINE L2 -12 3301 3205 2715 36 0 0 chr6 40805881 40806183 -141609059 - AluY SINE Alu -9 302 1 1393 117 45 9 chr6 40806226 40806448 -141608794 + MER30 DNA MER1_type 1 230 0 467 198 37 0 chr6 40806456 40806537 -141608705 - AluJo SINE Alu -111 201 118 2406 118 0 0 chr6 40806587 40806900 -141608342 - AluSq SINE Alu 0 313 1 2977 172 12 0 chr6 40806900 40807471 -141607771 - L1 LINE L1 -779 5367 4790 2282 106 0 19 chr6 40807471 40807783 -141607459 - AluSx SINE Alu -4 308 3 343 94 21 188 chr6 40807828 40807872 -141607370 - Charlie1 DNA MER1_type 0 2761 2740 2522 75 0 0 chr6 40807872 40808178 -141607064 - AluY SINE Alu 0 311 6 343 94 21 188 chr6 40808178 40808229 -141607013 - Charlie1 DNA MER1_type -21 2740 2682 781 140 21 14 chr6 40808262 40808405 -141606837 - Charlie1 DNA MER1_type -714 2047 1904 1770 176 0 29 chr6 40808408 40808720 -141606522 - AluJo SINE Alu -9 303 1 1685 184 10 19 chr6 40808720 40809029 -141606213 - AluJo SINE Alu -6 306 1 2203 96 0 7 chr6 40809036 40809342 -141605900 - AluSg SINE Alu 0 304 1 306 178 89 10 chr6 40809342 40809443 -141605799 - Charlie1 DNA MER1_type -1101 1660 1552 * 926 235 110 64 chr6 40809433 40809888 -141605354 - MLT1F LTR MaLR -65 477 2 265 273 0 0 chr6 40810161 40810227 -141605015 - L3b LINE CR1 -189 1394 1329 1310 148 106 84 chr6 40810754 40810810 -141604432 + MER47A DNA MER2_type 1 54 -2269 2601 56 3 0 chr6 40810810 40811112 -141604130 + AluY SINE Alu 1 303 -8 1310 148 106 84 chr6 40811112 40811160 -141604082 + MER47A DNA MER2_type 54 99 -2224 2183 106 17 0 chr6 40811160 40811453 -141603789 - AluSq SINE Alu -11 302 5 1310 148 106 84 chr6 40811453 40811705 -141603537 + MER47A DNA MER2_type 99 366 0 765 164 0 8 chr6 40812074 40812196 -141603046 + AluSx SINE Alu 50 170 -142 1647 149 0 0 chr6 40812202 40812437 -141602805 + AluJb SINE Alu 75 309 -3 2629 64 0 0 chr6 40812458 40812769 -141602473 - AluY SINE Alu 0 311 1 345 47 0 0 chr6 40812794 40812837 -141602405 - MER57B LTR ERV1 -66 368 326 1136 174 18 18 chr6 40813415 40813633 -141601609 - MER20 DNA MER1_type -1 218 1 2271 111 7 0 chr6 40814397 40814695 -141600547 - AluSx SINE Alu -12 300 1 2129 182 46 40 chr6 40814841 40815342 -141599900 + MLT1D LTR MaLR 2 505 0 894 259 179 10 chr6 40815653 40816067 -141599175 - L2 LINE L2 -1 3312 2829 789 231 82 0 chr6 40816594 40816789 -141598453 - MIR SINE MIR -40 222 12 386 285 80 13 chr6 40817279 40817430 -141597812 - MIR SINE MIR -82 180 20 243 188 297 50 chr6 40818039 40818140 -141597102 + MIR SINE MIR 134 259 -3 741 167 0 47 chr6 40818224 40818374 -141596868 + FLAM_C SINE Alu 1 143 0 403 333 98 22 chr6 40818846 40819071 -141596171 - L1ME4a LINE L1 -6 6115 5874 298 163 43 33 chr6 40820678 40820770 -141594472 - L1MB7 LINE L1 -2 6176 6084 1860 178 134 10 chr6 40820790 40821290 -141593952 - L1MB7 LINE L1 -25 6159 5598 2000 104 0 19 chr6 40821290 40821559 -141593683 - AluSx SINE Alu -10 302 39 2387 74 23 3 chr6 40821568 40821867 -141593375 - AluSc SINE Alu -4 305 1 433 189 167 77 chr6 40821905 40821983 -141593259 - L1MC4a LINE L1 -1899 5909 5839 2495 67 3 29 chr6 40821983 40822298 -141592944 - AluY SINE Alu -4 307 1 433 189 167 77 chr6 40822298 40822354 -141592888 - L1MC4a LINE L1 -1969 5839 5789 2181 132 3 0 chr6 40822354 40822649 -141592593 - AluSx SINE Alu -16 296 1 433 189 167 77 chr6 40822649 40822735 -141592507 - L1MC4a LINE L1 -2019 5789 5668 541 83 131 0 chr6 40822969 40823053 -141592189 - MLT1F LTR MaLR -1 541 447 282 292 0 14 chr6 40823048 40823120 -141592122 - MLT1F LTR MaLR -465 77 7 * 2136 133 7 0 chr6 40823414 40823708 -141591534 - AluSx SINE Alu -16 296 1 212 341 134 6 chr6 40823709 40823888 -141591354 - MIR SINE MIR -43 219 18 277 217 109 11 chr6 40824308 40824400 -141590842 - MIR SINE MIR -81 181 81 859 242 148 14 chr6 40824400 40824826 -141590416 - MLT1H LTR MaLR 0 549 5 377 286 51 34 chr6 40825273 40825448 -141589794 + MER5B DNA MER1_type 1 178 0 244 184 53 61 chr6 40825968 40826082 -141589160 - L1ME4a LINE L1 -33 6088 5976 1358 233 24 78 chr6 40826147 40826644 -141588598 - L1MB7 LINE L1 -9 6175 5706 278 311 115 33 chr6 40826663 40826785 -141588457 + L2 LINE L2 3159 3290 -23 329 206 58 31 chr6 40826826 40826929 -141588313 - L1MB7 LINE L1 -520 5601 5510 204 318 71 12 chr6 40828008 40828093 -141587149 - L2 LINE L2 -21 3251 3162 378 216 20 39 chr6 40828519 40828621 -141586621 + MLT1C LTR MaLR 1 100 -367 553 259 195 0 chr6 40828836 40829021 -141586221 + MIR SINE MIR 9 229 -33 2365 100 0 3 chr6 40829028 40829337 -141585905 - AluSx SINE Alu -4 308 1 796 256 40 28 chr6 40829585 40829739 -141585503 + MIR SINE MIR 6 166 -96 1608 139 31 90 chr6 40829739 40830127 -141585115 - MLT1A1 LTR MaLR 0 365 1 796 256 40 28 chr6 40830127 40830222 -141585020 + MIR SINE MIR 166 258 -4 1903 176 3 10 chr6 40830516 40830828 -141584414 - AluJb SINE Alu -2 310 1 2640 58 0 3 chr6 40831234 40831543 -141583699 + AluY SINE Alu 1 308 -3 212 332 105 22 chr6 40831581 40831810 -141583432 + L2 LINE L2 2289 2536 -778 301 238 200 0 chr6 40831877 40831982 -141583260 - L1MEd LINE L1 -3873 2256 2131 2480 88 7 0 chr6 40832068 40832374 -141582868 - AluSx SINE Alu -4 308 1 1769 182 3 13 chr6 40832409 40832711 -141582531 - AluJo SINE Alu -13 299 1 376 160 130 0 chr6 40832972 40833072 -141582170 - L1MD3 LINE L1 -5 7990 7878 394 278 101 56 chr6 40833072 40833270 -141581972 - L1MEd LINE L1 -4902 1217 1011 271 259 90 37 chr6 40833270 40833459 -141581783 - L1MEd LINE L1 -5325 794 596 2446 81 0 0 chr6 40833598 40833895 -141581347 + AluY SINE Alu 2 298 -13 443 311 59 0 chr6 40834361 40834496 -141580746 + MIR SINE MIR 1 143 -119 2344 90 0 0 chr6 40834730 40835020 -141580222 - AluSc SINE Alu -19 290 1 2357 100 7 0 chr6 40835951 40836260 -141578982 - AluSq SINE Alu -2 311 1 236 263 59 102 chr6 40836331 40836449 -141578793 - L2 LINE L2 -19 3294 3182 325 381 78 19 chr6 40836560 40836830 -141578412 - L3 LINE CR1 -1269 308 23 501 270 85 30 chr6 40837045 40837245 -141577997 - MLT1J LTR MaLR -102 409 199 2174 120 3 19 chr6 40837335 40837652 -141577590 - AluJb SINE Alu 0 312 1 180 353 74 25 chr6 40837652 40837774 -141577468 + MIR SINE MIR 122 249 -13 687 217 210 66 chr6 40838233 40838675 -141576567 - MLT1J LTR MaLR -4 507 2 327 261 101 0 chr6 40839623 40839742 -141575500 + MIR SINE MIR 84 214 -48 240 143 0 0 chr6 40839748 40839790 -141575452 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3327 89 19 115 chr6 40840181 40841465 -141573777 + SVA Other Other 322 868 -520 7219 58 8 43 chr6 40841530 40842519 -141572723 + SVA Other Other 433 1386 0 207 0 0 0 chr6 40843174 40843197 -141572045 + (T)n Simple_repeat Simple_repeat 1 23 0 1138 168 0 0 chr6 40843203 40843370 -141571872 + FRAM SINE Alu 1 167 -9 300 286 32 84 chr6 40844429 40844572 -141570670 - L1MC4a LINE L1 -1851 5957 5821 2359 117 0 0 chr6 40844572 40844880 -141570362 - AluSx SINE Alu -4 308 1 2129 122 7 0 chr6 40845290 40845578 -141569664 + AluSx SINE Alu 1 290 -22 196 286 118 17 chr6 40845710 40845829 -141569413 - L2 LINE L2 -2 3270 3140 273 163 0 0 chr6 40845837 40845886 -141569356 + L1ME3 LINE L1 5933 5981 -181 912 143 6 56 chr6 40845890 40846051 -141569191 + FRAM SINE Alu 1 153 -23 334 221 23 161 chr6 40846055 40846157 -141569085 + L1ME3 LINE L1 5975 6033 -129 2451 92 0 3 chr6 40846157 40846471 -141568771 - AluSq SINE Alu 0 313 1 334 221 23 161 chr6 40846471 40846585 -141568657 + L1ME3 LINE L1 6033 6161 -1 210 143 0 0 chr6 40847532 40847567 -141567675 + (A)n Simple_repeat Simple_repeat 1 35 0 1774 171 6 19 chr6 40847599 40847914 -141567328 + AluJo SINE Alu 1 311 -1 416 209 0 0 chr6 40848134 40848225 -141567017 - L1MC4 LINE L1 -26 8016 7926 * 498 270 35 13 chr6 40848222 40848415 -141566827 - L1MC4 LINE L1 -359 7636 7347 182 373 0 0 chr6 40848567 40848642 -141566600 + MIR SINE MIR 33 107 -101 476 288 14 7 chr6 40848655 40848794 -141566448 - MIR SINE MIR -121 141 2 2162 125 0 39 chr6 40851347 40851658 -141563584 + AluSx SINE Alu 1 299 -13 400 297 27 21 chr6 40851730 40851925 -141563317 - MIR SINE MIR -56 206 11 389 361 30 6 chr6 40852045 40852211 -141563031 + L3 LINE CR1 656 825 -752 185 246 82 0 chr6 40852397 40852458 -141562784 + L3 LINE CR1 1156 1221 -356 630 234 153 5 chr6 40852610 40852819 -141562423 + MIR SINE MIR 2 241 -21 2598 74 0 0 chr6 40853051 40853362 -141561880 - AluY SINE Alu 0 311 1 25 31 0 0 chr6 40853375 40853407 -141561835 + AT_rich Low_complexity Low_complexity 1 32 0 2289 112 0 0 chr6 40853407 40853702 -141561540 + AluY SINE Alu 1 295 -16 499 132 0 0 chr6 40853703 40853779 -141561463 - FLAM_A SINE Alu -27 115 40 1900 248 181 25 chr6 40854527 40855651 -141559591 - L2 LINE L2 -83 3230 1939 1987 142 14 3 chr6 40855690 40855979 -141559263 + AluSx SINE Alu 1 292 -20 2313 112 10 0 chr6 40855979 40856282 -141558960 + AluSx SINE Alu 1 306 -6 1748 158 24 31 chr6 40856282 40856573 -141558669 + AluSx SINE Alu 1 289 -23 730 204 12 18 chr6 40856665 40856832 -141558410 - L1ME4a LINE L1 -263 5858 5693 309 98 0 0 chr6 40857287 40857328 -141557914 - tRNA-Lys-AAG tRNA tRNA -34 42 2 2233 132 7 0 chr6 40857376 40857680 -141557562 + AluJb SINE Alu 1 306 -6 224 202 64 75 chr6 40857942 40858036 -141557206 - MIR3 SINE MIR -8 200 108 257 360 60 5 chr6 40858193 40858393 -141556849 + L2 LINE L2 2605 2815 -499 253 176 0 59 chr6 40858625 40858676 -141556566 + L2 LINE L2 3266 3313 0 467 296 30 12 chr6 40858982 40859151 -141556091 - L1ME4a LINE L1 -10 6111 5940 251 238 95 9 chr6 40860119 40860224 -141555018 - MIR SINE MIR -13 249 136 338 263 0 12 chr6 40860405 40860485 -141554757 - L2 LINE L2 0 3313 3235 808 228 74 0 chr6 40861023 40861212 -141554030 + MIR SINE MIR 6 208 -54 423 0 0 0 chr6 40861812 40861859 -141553383 + (TG)n Simple_repeat Simple_repeat 2 48 0 1834 134 73 0 chr6 40861918 40862193 -141553049 - AluSx SINE Alu -13 299 5 2316 98 3 0 chr6 40862491 40862786 -141552456 - AluSx SINE Alu -14 298 3 1958 147 17 0 chr6 40862788 40863081 -141552161 - AluSx SINE Alu -14 298 1 784 120 3 14 chr6 40864410 40864575 -141550667 + L1PA3 LINE L1 6032 6168 0 21 36 0 0 chr6 40864615 40864643 -141550599 + AT_rich Low_complexity Low_complexity 1 28 0 444 317 91 41 chr6 40864862 40865281 -141549961 - MLT1J LTR MaLR -71 440 1 271 267 99 37 chr6 40865450 40865611 -141549631 - Charlie8 DNA MER1_type -2132 285 115 886 204 158 11 chr6 40865630 40865890 -141549352 - L1MD3 LINE L1 -15 7980 7683 29 0 0 0 chr6 40866052 40866081 -141549161 + AT_rich Low_complexity Low_complexity 1 29 0 1748 171 10 3 chr6 40866081 40866390 -141548852 + AluJo SINE Alu 1 311 -1 1127 140 17 0 chr6 40866425 40866604 -141548638 - L1PA13 LINE L1 -14 6149 5968 680 179 26 39 chr6 40866662 40866818 -141548424 + MER5B DNA MER1_type 11 164 -14 242 353 48 12 chr6 40866839 40867006 -141548236 - L2 LINE L2 -831 2483 2311 304 232 139 88 chr6 40868170 40868364 -141546878 + MIR SINE MIR 2 205 -57 2128 121 0 7 chr6 40868784 40869089 -141546153 - AluSx SINE Alu -9 303 1 2094 104 17 7 chr6 40870540 40870837 -141544405 - AluSx SINE Alu -12 300 1 596 311 62 9 chr6 40870842 40871067 -141544175 + L1MC4a LINE L1 5603 5839 -1969 235 293 35 35 chr6 40871368 40871484 -141543758 + MIR SINE MIR 23 138 -70 326 288 54 0 chr6 40871986 40872097 -141543145 - L2 LINE L2 -6 3266 3150 1973 137 54 61 chr6 40872603 40872637 -141542605 - MLT2D LTR ERVL 0 414 381 225 0 0 0 chr6 40872637 40872662 -141542580 + (TG)n Simple_repeat Simple_repeat 2 26 0 1973 137 54 61 chr6 40872662 40872958 -141542284 - MLT2D LTR ERVL -33 381 85 2247 75 39 13 chr6 40872958 40873263 -141541979 + AluSq SINE Alu 1 313 0 1973 137 54 61 chr6 40873263 40873341 -141541901 - MLT2D LTR ERVL -329 85 8 279 226 38 75 chr6 40873354 40873460 -141541782 + MIR SINE MIR 95 196 -66 207 214 0 0 chr6 40873722 40873764 -141541478 + T-rich Low_complexity Low_complexity 1 42 0 1776 130 0 83 chr6 40873809 40874162 -141541080 - AluJb SINE Alu 0 312 1 1304 170 130 30 chr6 40874162 40874432 -141540810 - AluJo SINE Alu -5 297 1 1935 70 0 27 chr6 40874432 40874688 -141540554 - AluSc SINE Alu -60 249 1 286 257 128 46 chr6 40875370 40875479 -141539763 - L2 LINE L2 -87 3226 3109 299 278 67 0 chr6 40876818 40876908 -141538334 - MIR SINE MIR -107 155 60 2320 101 0 0 chr6 40877678 40877985 -141537257 - AluSx SINE Alu -5 307 1 1083 82 0 0 chr6 40877986 40878121 -141537121 - AluSq/x SINE Alu -177 135 1 2171 82 0 7 chr6 40878169 40878495 -141536747 - AluSq SINE Alu 0 327 4 217 217 43 0 chr6 40878913 40878959 -141536283 + MIR SINE MIR 212 259 -3 382 229 229 34 chr6 40879680 40879794 -141535448 - MIR SINE MIR -2 260 170 1965 122 6 42 chr6 40879794 40880105 -141535137 + AluJo SINE Alu 1 300 -12 2265 92 3 16 chr6 40880105 40880420 -141534822 + AluSx SINE Alu 1 311 -1 382 229 229 34 chr6 40880420 40880509 -141534733 - MIR SINE MIR -91 171 16 197 229 104 0 chr6 40880551 40880599 -141534643 - L2 LINE L2 -58 3255 3203 2272 88 0 3 chr6 40881849 40882146 -141533096 + AluSx SINE Alu 1 296 -16 553 279 209 0 chr6 40882248 40882463 -141532779 - MIR SINE MIR -1 261 2 313 362 0 7 chr6 40883100 40883252 -141531990 + CT-rich Low_complexity Low_complexity 1 151 0 439 279 58 6 chr6 40885521 40885693 -141529549 - LTR33A LTR ERVL -13 510 330 273 343 145 0 chr6 40885965 40886131 -141529111 - LTR50 LTR ERVL -605 190 1 2533 73 14 4 chr6 40886407 40886977 -141528265 - LTR10E LTR ERV1 0 633 1 422 249 122 22 chr6 40887234 40887415 -141527827 - MIR SINE MIR -49 213 15 225 196 0 0 chr6 40887533 40887589 -141527653 + L1MC3 LINE L1 7722 7777 -8 2438 66 0 0 chr6 40887597 40887902 -141527340 + AluY SINE Alu 1 305 -6 1837 152 30 3 chr6 40887929 40888232 -141527010 + AluSx SINE Alu 1 311 -1 2225 108 0 0 chr6 40888235 40888542 -141526700 - AluSx SINE Alu -5 307 1 2186 105 3 3 chr6 40888679 40888984 -141526258 + AluSc SINE Alu 1 305 -4 336 279 59 29 chr6 40889020 40889156 -141526086 + L1ME LINE L1 5494 5633 -537 864 249 144 88 chr6 40889186 40889595 -141525647 + LTR16A LTR ERVL 19 450 0 1801 110 3 43 chr6 40889695 40889815 -141525427 + AluJo SINE Alu 6 129 -183 1872 113 3 57 chr6 40889815 40890145 -141525097 - AluSq SINE Alu 0 314 1 1801 110 3 43 chr6 40890145 40890322 -141524920 + AluJo SINE Alu 129 292 -20 772 226 99 69 chr6 40890430 40890462 -141524780 + L1MC/D LINE L1 5254 5284 -2524 2337 96 0 0 chr6 40890462 40890774 -141524468 + AluSq SINE Alu 1 312 -1 772 226 99 69 chr6 40890774 40890866 -141524376 + L1MC/D LINE L1 5284 5372 -2436 2273 96 3 6 chr6 40890866 40891180 -141524062 + AluSq SINE Alu 1 313 0 772 226 99 69 chr6 40891180 40891234 -141524008 + L1MC/D LINE L1 5372 5423 -2385 1760 168 10 0 chr6 40891234 40891532 -141523710 - AluJo SINE Alu -11 301 1 772 226 99 69 chr6 40891532 40891713 -141523529 + L1MC/D LINE L1 5423 5626 -2182 240 256 15 131 chr6 40891937 40892074 -141523168 - MIR3 SINE MIR -3 205 85 250 257 0 14 chr6 40892123 40892193 -141523049 - MIR SINE MIR -23 239 171 270 326 62 0 chr6 40892195 40892339 -141522903 - LTR67 LTR ERVL -2 555 403 272 260 87 19 chr6 40893779 40893883 -141521359 - MIR3 SINE MIR -22 186 76 257 270 40 0 chr6 40893981 40894055 -141521187 + L2 LINE L2 3201 3277 -36 1996 117 31 0 chr6 40894361 40894652 -141520590 - AluSx SINE Alu -12 300 1 296 183 113 0 chr6 40895288 40895359 -141519883 + MER103 DNA DNA 15 93 -73 1409 187 4 0 chr6 40895408 40895649 -141519593 + AluJb SINE Alu 1 242 -70 330 111 0 19 chr6 40895713 40895767 -141519475 + MER50 LTR ERV1 502 554 -180 2264 106 6 0 chr6 40895810 40896121 -141519121 - AluSq SINE Alu 0 313 1 368 254 42 0 chr6 40896584 40896702 -141518540 - Charlie2 DNA MER1_type -8 2854 2732 2372 89 0 0 chr6 40896702 40897005 -141518237 - AluSg SINE Alu -7 303 1 1755 143 59 3 chr6 40897218 40897504 -141517738 - AluJo SINE Alu -10 302 1 2259 77 3 13 chr6 40897552 40897850 -141517392 - AluSp SINE Alu -18 295 1 569 146 0 0 chr6 40897877 40897959 -141517283 - AluSp/q SINE Alu -15 298 217 501 192 10 10 chr6 40897972 40898071 -141517171 + MER96B DNA MER1_type? 319 417 0 204 267 0 0 chr6 40898537 40898582 -141516660 + G-rich Low_complexity Low_complexity 6 50 0 667 269 81 40 chr6 40898589 40898772 -141516470 - MIR SINE MIR -3 259 64 779 182 156 0 chr6 40898772 40898926 -141516316 - MER45A DNA AcHobo 0 178 1 667 269 81 40 chr6 40898926 40898965 -141516277 - MIR SINE MIR -198 64 28 2252 90 7 0 chr6 40899038 40899339 -141515903 - AluSp SINE Alu -10 303 1 244 306 88 112 chr6 40899358 40899410 -141515832 - MIR SINE MIR -77 185 133 1892 138 21 0 chr6 40899410 40899699 -141515543 - AluSq SINE Alu -18 295 1 244 306 88 112 chr6 40899699 40899816 -141515426 - MIR SINE MIR -129 133 20 739 241 116 10 chr6 40900648 40900847 -141514395 + MIR SINE MIR 36 255 -7 2251 104 0 0 chr6 40900852 40901159 -141514083 - AluSg SINE Alu -3 307 1 1530 155 121 0 chr6 40901232 40901555 -141513687 - L1MB7 LINE L1 0 6184 5823 2332 74 0 13 chr6 40901555 40901864 -141513378 - AluY SINE Alu -6 305 1 838 136 15 0 chr6 40901865 40901997 -141513245 - AluJb SINE Alu -178 134 1 471 223 0 0 chr6 40901998 40902092 -141513150 - MER33 DNA MER1_type -228 96 3 2032 93 4 0 chr6 40902117 40902387 -141512855 - AluSg SINE Alu -17 293 23 2159 105 7 0 chr6 40902391 40902685 -141512557 - AluSx SINE Alu -16 296 1 2331 84 3 0 chr6 40903628 40903927 -141511315 + AluSq SINE Alu 1 300 -13 2030 158 71 45 chr6 40904538 40904606 -141510636 - Tigger2a DNA MER2_type -2274 434 369 1760 120 52 0 chr6 40904606 40904899 -141510343 - AluJb SINE Alu 0 307 1 2030 158 71 45 chr6 40904899 40905252 -141509990 - Tigger2a DNA MER2_type -2339 369 1 259 250 0 0 chr6 40905365 40905421 -141509821 - MIR SINE MIR -89 173 118 2099 101 10 7 chr6 40905421 40905729 -141509513 + AluJb SINE Alu 1 309 -3 2091 117 0 7 chr6 40905729 40906028 -141509214 + AluSq SINE Alu 1 297 -16 1916 145 0 0 chr6 40906038 40906367 -141508875 + AluSx SINE Alu 12 312 0 519 187 84 65 chr6 40906406 40906561 -141508681 - MER91B DNA MER1_type -32 158 1 221 212 8 136 chr6 40906822 40906940 -141508302 - MER91B DNA MER1_type -87 103 1 390 235 13 3 chr6 40907477 40907631 -141507611 - Charlie1b DNA MER1_type -323 200 6 501 262 331 0 chr6 40907969 40908415 -141506827 + L2 LINE L2 2714 3308 -5 279 256 128 8 chr6 40909885 40910018 -141505224 - Charlie7 DNA MER1_type -17 2595 2447 893 234 134 21 chr6 40910060 40910584 -141504658 - Charlie7 DNA MER1_type -1941 671 56 301 190 38 13 chr6 40910731 40910810 -141504432 + Charlie4 DNA MER1_type 1822 1902 -59 2022 121 13 26 chr6 40910913 40911226 -141504016 - AluSg SINE Alu -1 309 1 364 355 54 16 chr6 40911736 40911922 -141503320 - L2 LINE L2 -1 3271 3079 2007 141 0 10 chr6 40912163 40912469 -141502773 - AluSx SINE Alu -9 303 1 2303 81 7 0 chr6 40913376 40913671 -141501571 - AluSp SINE Alu -16 297 1 1671 136 37 20 chr6 40913985 40914279 -141500963 - AluJo SINE Alu -13 299 1 547 222 56 0 chr6 40915498 40915624 -141499618 - FLAM_A SINE Alu -9 133 1 1953 138 0 14 chr6 40915627 40915943 -141499299 - AluSx SINE Alu 0 312 1 1985 115 4 4 chr6 40916992 40917270 -141497972 - AluSx SINE Alu -30 282 5 1508 146 86 8 chr6 40917781 40918049 -141497193 - AluSg SINE Alu -16 294 6 820 113 60 15 chr6 40918049 40918182 -141497060 - AluJb SINE Alu -173 139 1 301 325 13 13 chr6 40918329 40918486 -141496756 - L1MC4a LINE L1 -1841 5967 5811 2490 57 0 0 chr6 40918506 40918805 -141496437 - AluY SINE Alu -12 299 1 500 269 25 44 chr6 40918808 40918968 -141496274 + MIR SINE MIR 102 258 -4 2261 95 3 0 chr6 40918970 40919264 -141495978 - AluSx SINE Alu -16 296 2 608 314 26 5 chr6 40919421 40919612 -141495630 - MIR SINE MIR -48 214 20 2206 127 0 0 chr6 40919877 40920185 -141495057 + AluSg SINE Alu 1 308 -2 262 328 135 51 chr6 40920251 40920522 -141494720 - L2 LINE L2 -1 3312 2986 2127 77 20 34 chr6 40920522 40920820 -141494422 - AluSg SINE Alu -14 296 3 262 328 135 51 chr6 40920820 40920999 -141494243 - L2 LINE L2 -327 2986 2824 21 36 0 0 chr6 40921051 40921079 -141494163 + AT_rich Low_complexity Low_complexity 1 28 0 2508 55 3 0 chr6 40921088 40921395 -141493847 - AluY SINE Alu -3 308 1 830 129 0 0 chr6 40921395 40921511 -141493731 - AluJo/FLAM SINE Alu -196 116 1 571 221 6 87 chr6 40921512 40921584 -141493658 - MIR SINE MIR -37 225 149 2489 52 0 7 chr6 40921584 40921892 -141493350 - AluY SINE Alu -5 306 1 571 221 6 87 chr6 40921892 40921991 -141493251 - MIR SINE MIR -113 149 68 222 37 0 0 chr6 40922018 40922045 -141493197 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2048 105 0 11 chr6 40922050 40922335 -141492907 - AluSx SINE Alu -30 282 1 270 359 56 20 chr6 40922530 40922725 -141492517 - L2 LINE L2 -545 2769 2568 241 310 13 39 chr6 40922737 40922892 -141492350 + MIR SINE MIR 112 262 0 1461 172 61 20 chr6 40923415 40923711 -141491531 - AluJb SINE Alu -4 308 1 1945 90 90 0 chr6 40923963 40924241 -141491001 - AluSx SINE Alu -9 303 1 312 232 112 24 chr6 40926661 40926786 -141488456 - MIR SINE MIR -101 161 26 638 213 140 0 chr6 40928000 40928150 -141487092 - AluSp SINE Alu -16 297 127 2000 87 28 7 chr6 40928313 40928601 -141486641 - AluY SINE Alu -17 294 1 884 148 35 0 chr6 40928650 40928792 -141486450 + AluSg/x SINE Alu 134 280 -32 226 252 138 41 chr6 40929286 40929409 -141485833 + MIR3 SINE MIR 36 170 -38 297 100 100 14 chr6 40929422 40929526 -141485716 + MER53 DNA DNA 1 169 -20 2076 91 10 42 chr6 40929688 40929996 -141485246 - AluY SINE Alu -13 298 1 189 0 0 0 chr6 40930488 40930509 -141484733 + (T)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr6 40930583 40930626 -141484616 + AT_rich Low_complexity Low_complexity 1 43 0 362 283 131 0 chr6 40933369 40933468 -141481774 - MER91A DNA MER1_type -83 113 2 328 248 0 88 chr6 40933505 40933642 -141481600 - L1ME4a LINE L1 -54 6067 5943 2201 105 7 0 chr6 40933683 40933979 -141481263 - AluSq SINE Alu -15 298 1 1612 152 6 54 chr6 40934697 40935013 -141480229 - AluJo SINE Alu -11 301 1 295 195 166 3 chr6 40935542 40935625 -141479617 + MIR SINE MIR 33 129 -79 2306 102 0 0 chr6 40935731 40936036 -141479206 - AluSg SINE Alu -5 305 1 226 207 0 35 chr6 40936985 40937043 -141478199 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr6 40937236 40937257 -141477985 + GC_rich Low_complexity Low_complexity 1 21 0 783 164 33 0 chr6 40937363 40937485 -141477757 - FLAM_A SINE Alu -6 127 2 544 234 76 63 chr6 40937558 40937716 -141477526 + MER91A DNA MER1_type 1 160 -36 624 259 146 14 chr6 40938414 40938634 -141476608 - MIR SINE MIR -1 261 13 2117 87 4 4 chr6 40938847 40939122 -141476120 - AluSx SINE Alu -16 296 22 780 213 0 0 chr6 40939488 40939624 -141475618 + AluJo SINE Alu 1 136 -176 197 277 191 0 chr6 40939926 40940020 -141475222 + L2 LINE L2 3202 3313 0 239 361 57 10 chr6 40940370 40940564 -141474678 + L2 LINE L2 2549 2751 -563 472 297 28 0 chr6 40940664 40940809 -141474433 + MIR SINE MIR 63 211 -51 391 311 4 114 chr6 40940833 40941113 -141474129 + L2 LINE L2 2936 3184 -88 357 207 107 95 chr6 40943739 40943908 -141471334 + MIR SINE MIR 79 249 -13 1835 157 6 13 chr6 40943997 40944132 -141471110 + AluSx SINE Alu 1 135 -177 2219 100 10 0 chr6 40944132 40944432 -141470810 + AluSg SINE Alu 3 305 -5 1835 157 6 13 chr6 40944432 40944609 -141470633 + AluSx SINE Alu 135 311 -1 2053 78 0 109 chr6 40945568 40945915 -141469327 - AluSg SINE Alu -1 309 1 1093 236 5 0 chr6 40946019 40946227 -141469015 - MIR SINE MIR -21 241 33 25 0 0 0 chr6 40946593 40946618 -141468624 + AT_rich Low_complexity Low_complexity 1 25 0 634 127 103 56 chr6 40946627 40946753 -141468489 + AluSq/x SINE Alu 5 136 -177 22 0 0 0 chr6 40947071 40947093 -141468149 + GC_rich Low_complexity Low_complexity 1 22 0 221 279 13 57 chr6 40948180 40948338 -141466904 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 563 105 0 0 chr6 40950047 40950133 -141465109 - L1MB4 LINE L1 -1 6179 6094 268 240 248 16 chr6 40951910 40952031 -141463211 - MIR3 SINE MIR -21 187 39 24 53 0 0 chr6 40953768 40953806 -141461436 + GC_rich Low_complexity Low_complexity 1 38 0 241 279 41 23 chr6 40953848 40954020 -141461222 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 964 206 94 14 chr6 40956182 40956405 -141458837 + MIR SINE MIR 13 253 -9 242 282 39 0 chr6 40956439 40956517 -141458725 + MIR3 SINE MIR 76 156 -52 187 258 32 16 chr6 40957535 40957597 -141457645 + L2 LINE L2 3029 3091 -181 1033 223 133 62 chr6 40958064 40958084 -141457158 + L2 LINE L2 2696 2713 -600 1526 171 43 46 chr6 40958084 40958388 -141456854 + AluJb SINE Alu 2 304 -8 2147 134 0 0 chr6 40958388 40958695 -141456547 + AluSx SINE Alu 1 307 -5 1033 223 133 62 chr6 40958695 40959014 -141456228 + L2 LINE L2 2713 3008 -305 2149 118 0 16 chr6 40959014 40959047 -141456195 - AluSg SINE Alu 0 310 278 198 0 0 0 chr6 40959047 40959069 -141456173 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2149 118 0 16 chr6 40959069 40959349 -141455893 - AluSg SINE Alu -32 278 2 2024 112 3 16 chr6 40959353 40959657 -141455585 - AluSq SINE Alu -13 300 1 1033 223 133 62 chr6 40959657 40959786 -141455456 + L2 LINE L2 3010 3128 -185 2380 49 0 3 chr6 40959786 40960096 -141455146 - AluY SINE Alu 0 309 1 1033 223 133 62 chr6 40960096 40960195 -141455047 + L2 LINE L2 3128 3310 -3 1722 126 0 89 chr6 40960896 40961222 -141454020 + AluJb SINE Alu 5 301 -11 633 264 13 77 chr6 40961239 40961416 -141453826 + MIR SINE MIR 41 201 -61 2236 78 3 23 chr6 40961416 40961724 -141453518 - AluY SINE Alu -9 302 1 633 264 13 77 chr6 40961724 40961781 -141453461 + MIR SINE MIR 201 260 -2 2048 138 0 3 chr6 40961791 40962095 -141453147 - AluSx SINE Alu -9 303 1 387 303 110 0 chr6 40962220 40962329 -141452913 - L2 LINE L2 0 3313 3193 340 213 43 32 chr6 40962330 40962424 -141452818 + MER5A DNA MER1_type 9 103 -86 502 257 68 0 chr6 40963285 40963433 -141451809 + MIR SINE MIR 7 164 -98 665 238 48 42 chr6 40963453 40963642 -141451600 - MIR SINE MIR -13 249 60 1941 201 56 71 chr6 40963843 40964376 -141450866 + MLT1F LTR MaLR 18 542 0 2037 129 3 35 chr6 40964662 40964979 -141450263 - AluSq SINE Alu -6 307 1 189 330 55 33 chr6 40966291 40966382 -141448860 - MIR SINE MIR -138 124 32 1312 91 23 0 chr6 40966914 40967089 -141448153 - AluSg/x SINE Alu -10 302 124 321 159 0 0 chr6 40967807 40967870 -141447372 + CT-rich Low_complexity Low_complexity 2 64 0 248 229 114 69 chr6 40968214 40968345 -141446897 + MIR SINE MIR 33 169 -93 267 31 0 0 chr6 40968835 40968872 -141446370 + (CCCCAA)n Simple_repeat Simple_repeat 1 69 0 267 31 0 0 chr6 40968872 40968904 -141446338 + (CCCCAA)n Simple_repeat Simple_repeat 3 34 0 230 156 0 22 chr6 40969576 40969621 -141445621 + C-rich Low_complexity Low_complexity 3 46 0 2151 125 0 22 chr6 40970085 40970220 -141445022 + AluSq SINE Alu 1 138 -175 2278 85 4 0 chr6 40970220 40970524 -141444718 + AluY SINE Alu 1 305 0 2151 125 0 22 chr6 40970524 40970700 -141444542 + AluSq SINE Alu 138 306 -7 431 190 0 0 chr6 40970771 40970850 -141444392 - AluSp/q SINE Alu -14 299 221 335 239 162 44 chr6 40970901 40971166 -141444076 + L2 LINE L2 2727 3014 -258 1757 169 44 0 chr6 40971312 40971607 -141443635 + AluJo SINE Alu 1 308 -4 642 280 44 93 chr6 40971657 40971939 -141443303 - L2 LINE L2 -6 3307 3013 1985 121 44 0 chr6 40971939 40972236 -141443006 - AluSx SINE Alu 0 309 1 642 280 44 93 chr6 40972236 40972248 -141442994 - L2 LINE L2 -300 3013 3002 2232 98 0 54 chr6 40972248 40972565 -141442677 - AluSq SINE Alu -13 300 1 642 280 44 93 chr6 40972565 40972599 -141442643 - L2 LINE L2 -311 3002 2968 2365 94 0 7 chr6 40972599 40972897 -141442345 - AluSq SINE Alu -17 296 1 642 280 44 93 chr6 40972897 40972993 -141442249 - L2 LINE L2 -345 2968 2901 483 247 66 47 chr6 40972993 40973104 -141442138 + Zaphod DNA AcHobo 1 108 -777 2457 96 3 0 chr6 40973104 40973416 -141441826 + AluSq SINE Alu 1 313 0 483 247 66 47 chr6 40973416 40973557 -141441685 + Zaphod DNA AcHobo 108 257 -628 996 158 24 12 chr6 40973557 40973721 -141441521 + AluJb SINE Alu 136 301 -11 2453 208 123 26 chr6 40973724 40974072 -141441170 + Zaphod DNA AcHobo 252 565 -3466 1959 143 3 17 chr6 40974072 40974373 -141440869 - AluJb SINE Alu -15 297 1 2453 208 123 26 chr6 40974373 40974484 -141440758 + Zaphod DNA AcHobo 565 664 -3367 2379 93 6 13 chr6 40974484 40974796 -141440446 + AluSx SINE Alu 1 310 -2 2453 208 123 26 chr6 40974796 40975067 -141440175 + Zaphod DNA AcHobo 664 1054 -2977 2359 99 3 3 chr6 40975078 40975391 -141439851 + AluSq SINE Alu 1 313 0 543 272 12 25 chr6 40975601 40975660 -141439582 + MARNA DNA Mariner 208 266 -320 838 132 0 22 chr6 40975660 40975796 -141439446 + AluJo SINE Alu 1 133 -169 543 272 12 25 chr6 40975796 40975898 -141439344 + MARNA DNA Mariner 266 367 -219 347 180 0 0 chr6 40975996 40976057 -141439185 - MIR SINE MIR -139 123 63 444 323 12 24 chr6 40976139 40976306 -141438936 + MIR SINE MIR 94 258 -4 186 294 20 0 chr6 40976300 40976351 -141438891 - MIR SINE MIR -98 164 113 * 201 253 53 21 chr6 40976819 40976914 -141438328 - MIR SINE MIR -141 121 24 251 232 134 24 chr6 40976978 40977060 -141438182 - L2 LINE L2 -41 3231 3141 2338 86 7 3 chr6 40977129 40977433 -141437809 + AluSq SINE Alu 5 309 -4 2021 159 0 3 chr6 40977443 40977738 -141437504 + AluSx SINE Alu 1 294 -18 428 216 21 10 chr6 40978247 40978344 -141436898 - L2 LINE L2 -5 3308 3211 336 178 0 41 chr6 40978702 40978775 -141436467 - MIR SINE MIR -13 249 180 1033 180 0 6 chr6 40978775 40978953 -141436289 + AluJo SINE Alu 128 304 -8 193 333 58 0 chr6 40978955 40979042 -141436200 - MIR SINE MIR -85 177 86 438 261 150 0 chr6 40979256 40979409 -141435833 + MER5B DNA MER1_type 1 176 -2 521 294 38 12 chr6 40979456 40979616 -141435626 + MIR SINE MIR 44 207 -55 808 101 8 31 chr6 40980297 40980426 -141434816 + FLAM_C SINE Alu 1 126 -7 2281 104 7 0 chr6 40980432 40980729 -141434513 + AluSx SINE Alu 1 299 -13 238 226 48 0 chr6 40980765 40980827 -141434415 - MIR SINE MIR -67 141 77 2919 119 50 25 chr6 40980905 40980963 -141434279 + L1MB3 LINE L1 5612 5667 -516 2526 47 0 13 chr6 40980963 40981261 -141433981 + AluY SINE Alu 1 294 -17 2919 119 50 25 chr6 40981261 40981721 -141433521 + L1MB3 LINE L1 5667 6143 -40 687 152 8 32 chr6 40981721 40981846 -141433396 + AluJb SINE Alu 2 123 -189 307 85 0 0 chr6 40981846 40981893 -141433349 + L1MB3 LINE L1 6127 6173 -10 378 0 0 0 chr6 40981932 40981974 -141433268 + (CA)n Simple_repeat Simple_repeat 2 43 0 2451 86 0 7 chr6 40981997 40982300 -141432942 - AluSx SINE Alu -11 301 1 478 140 0 30 chr6 40982306 40982406 -141432836 - AluJ/FRAM SINE Alu 0 312 216 252 0 0 0 chr6 40982426 40982454 -141432788 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 719 153 0 0 chr6 40982454 40982572 -141432670 - FLAM_C SINE Alu -25 118 1 2320 113 3 0 chr6 40982761 40983072 -141432170 + AluSx SINE Alu 1 312 0 2234 99 0 0 chr6 40983235 40983541 -141431701 - AluY SINE Alu 0 306 1 1650 153 0 16 chr6 40983713 40983962 -141431280 + AluJb SINE Alu 1 245 -67 1916 133 46 7 chr6 40984218 40984503 -141430739 - AluJb SINE Alu -16 296 1 330 248 203 0 chr6 40984645 40984798 -141430444 + L2 LINE L2 780 963 -2351 1134 318 51 42 chr6 40984799 40985293 -141429949 + MLT1K LTR MaLR 17 514 -74 2286 99 0 0 chr6 40985344 40985652 -141429590 - AluSq SINE Alu 0 308 1 2502 86 0 3 chr6 40985677 40985990 -141429252 - AluSx SINE Alu 0 312 1 2472 67 3 0 chr6 40986001 40986298 -141428944 - AluSp SINE Alu -15 298 1 1876 175 7 0 chr6 40986381 40986690 -141428552 + AluJb SINE Alu 1 311 -1 637 229 92 25 chr6 40986721 40986961 -141428281 - L1ME3A LINE L1 -10 6160 5905 29 0 0 0 chr6 40986961 40986990 -141428252 + AT_rich Low_complexity Low_complexity 1 29 0 1082 158 6 0 chr6 40987011 40987176 -141428066 - FRAM SINE Alu -12 164 1 2341 101 3 13 chr6 40987186 40987502 -141427740 - AluSp SINE Alu 0 313 1 1741 188 30 3 chr6 40987509 40987813 -141427429 - AluJb SINE Alu 0 312 1 365 264 82 31 chr6 40987813 40987972 -141427270 - L1M4 LINE L1 -1093 5053 4887 2152 123 7 0 chr6 40987983 40988300 -141426942 - AluSx SINE Alu 0 312 1 2086 118 4 0 chr6 40988400 40988679 -141426563 + AluSx SINE Alu 1 280 -32 291 28 0 0 chr6 40988679 40988715 -141426527 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2257 124 3 0 chr6 40988727 40989033 -141426209 + AluSx SINE Alu 1 307 -5 233 252 61 10 chr6 40989036 40989139 -141426103 - MER5B DNA MER1_type -56 133 20 222 37 0 0 chr6 40989500 40989527 -141425715 + (TG)n Simple_repeat Simple_repeat 2 28 0 1900 147 0 48 chr6 40989528 40989841 -141425401 - AluJo SINE Alu -14 298 1 2215 108 3 0 chr6 40990094 40990381 -141424861 + AluSx SINE Alu 1 288 -24 293 307 0 24 chr6 40990412 40990539 -141424703 - L1 LINE L1 -1129 5017 4894 1571 194 31 7 chr6 40990540 40990828 -141424414 + AluJo SINE Alu 1 295 -17 803 196 6 18 chr6 40990878 40991046 -141424196 - FRAM SINE Alu 0 166 1 973 242 216 28 chr6 40991325 40991630 -141423612 + L2 LINE L2 40 286 -3028 180 0 0 0 chr6 40991630 40991650 -141423592 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 973 242 216 28 chr6 40991650 40991829 -141423413 + L2 LINE L2 286 430 -2884 1561 159 69 31 chr6 40991829 40992119 -141423123 + AluJo SINE Alu 1 301 -11 973 242 216 28 chr6 40992119 40992281 -141422961 + L2 LINE L2 430 809 -2505 1082 221 93 71 chr6 40992535 40992835 -141422407 - MLT1H LTR MaLR -37 512 195 1981 134 3 52 chr6 40992835 40993164 -141422078 + AluSq SINE Alu 1 313 0 1082 221 93 71 chr6 40993164 40993357 -141421885 - MLT1H LTR MaLR -354 195 8 3166 296 60 72 chr6 40993361 40993660 -141421582 + ERVL LTR ERVL 1139 1440 -4324 2264 115 0 7 chr6 40993660 40993964 -141421278 + AluSx SINE Alu 1 302 -10 3166 296 60 72 chr6 40993964 40994021 -141421221 + ERVL LTR ERVL 1440 1496 -4268 2525 75 7 0 chr6 40994021 40994326 -141420916 - AluSp SINE Alu -6 307 1 3166 296 60 72 chr6 40994326 40995008 -141420234 + ERVL LTR ERVL 1496 2185 -3579 1991 145 3 26 chr6 40995008 40995311 -141419931 + AluSx SINE Alu 1 296 -16 2464 99 0 3 chr6 40995312 40995625 -141419617 + AluSx SINE Alu 1 312 0 3166 296 60 72 chr6 40995625 40995833 -141419409 + ERVL LTR ERVL 2185 2394 -3370 1715 159 15 4 chr6 40995833 40996104 -141419138 - AluJo SINE Alu -11 301 28 3166 296 60 72 chr6 40996104 40996598 -141418644 + ERVL LTR ERVL 2394 2863 -2901 240 278 0 0 chr6 40996710 40996764 -141418478 + MER58A DNA MER1_type 1 54 -170 3050 171 31 76 chr6 40996970 40997395 -141417847 - L1M4 LINE L1 -1059 5087 4713 2147 148 0 0 chr6 40997395 40997698 -141417544 - AluSx SINE Alu -9 303 1 3050 171 31 76 chr6 40997698 40998071 -141417171 - L1M4 LINE L1 -1433 4713 4325 726 131 0 0 chr6 40998073 40998180 -141417062 - FLAM_A SINE Alu -12 130 24 325 215 38 0 chr6 40998202 40998281 -141416961 - L1M4 LINE L1 -1814 4332 4251 472 268 79 21 chr6 40998290 40998414 -141416828 + MLT1J LTR MaLR 65 205 -306 2436 87 0 3 chr6 40998414 40998714 -141416528 - AluSx SINE Alu -13 299 1 472 268 79 21 chr6 40998714 40998779 -141416463 + MLT1J LTR MaLR 205 265 -246 565 158 79 7 chr6 40999364 40999380 -141415862 - L1ME2 LINE L1 -271 5893 5880 2446 86 0 9 chr6 40999380 40999695 -141415547 - AluSx SINE Alu 0 312 1 565 158 79 7 chr6 40999695 40999830 -141415412 - L1ME2 LINE L1 -284 5880 5731 2309 114 0 3 chr6 40999838 41000146 -141415096 - AluSx SINE Alu -5 307 1 820 164 8 8 chr6 41000146 41000280 -141414962 - AluJo SINE Alu -178 134 1 643 249 36 6 chr6 41000362 41000527 -141414715 + MER5B DNA MER1_type 9 178 0 2244 100 3 13 chr6 41000767 41001066 -141414176 - AluSx SINE Alu -11 301 6 202 192 14 14 chr6 41001880 41001953 -141413289 + G-rich Low_complexity Low_complexity 3 75 0 1576 183 98 161 chr6 41002424 41002693 -141412549 + MER97a DNA MER1_type? 8 292 -602 2130 146 3 0 chr6 41002693 41003002 -141412240 - AluSx SINE Alu -2 310 1 1576 183 98 161 chr6 41003002 41003042 -141412200 + MER97a DNA MER1_type? 292 333 -561 1084 87 6 12 chr6 41003042 41003203 -141412039 + L1PA10 LINE L1 6003 6162 -6 1576 183 98 161 chr6 41003203 41003540 -141411702 + MER97a DNA MER1_type? 333 582 -312 618 172 0 97 chr6 41003540 41003633 -141411609 - FLAM_A SINE Alu -169 133 57 2242 139 3 0 chr6 41003633 41003943 -141411299 - AluSx SINE Alu -1 311 1 618 172 0 97 chr6 41003943 41003994 -141411248 - FLAM_A SINE Alu -245 57 3 1576 183 98 161 chr6 41003994 41004267 -141410975 + MER97a DNA MER1_type? 582 871 -23 287 338 90 21 chr6 41004362 41004838 -141410404 - HAL1b LINE L1 -708 640 102 989 194 26 133 chr6 41005031 41005217 -141410025 - AluYb8 SINE Alu 0 308 104 2115 119 0 14 chr6 41005217 41005510 -141409732 - AluSg SINE Alu -21 289 1 989 194 26 133 chr6 41005510 41005533 -141409709 - AluYb8 SINE Alu -204 104 80 1710 189 10 3 chr6 41005533 41005824 -141409418 - AluJo SINE Alu -19 293 1 989 194 26 133 chr6 41005824 41005958 -141409284 - AluYb8 SINE Alu -228 80 1 2302 116 0 6 chr6 41005970 41006281 -141408961 - AluSx SINE Alu -2 310 2 26 0 0 0 chr6 41006321 41006347 -141408895 + AT_rich Low_complexity Low_complexity 1 26 0 653 211 0 23 chr6 41006459 41006592 -141408650 - AluJb SINE Alu -181 131 2 3985 210 62 9 chr6 41006703 41007175 -141408067 + L1M4 LINE L1 714 1160 -5486 631 144 64 40 chr6 41007175 41007300 -141407942 + FLAM_A SINE Alu 1 128 -5 3985 210 62 9 chr6 41007300 41007794 -141407448 + L1M4 LINE L1 1160 1726 -4920 1983 144 7 10 chr6 41007794 41007929 -141407313 + AluSx SINE Alu 1 135 -177 2404 91 0 35 chr6 41007929 41008248 -141406994 + AluSg1 SINE Alu 1 308 -1 1983 144 7 10 chr6 41008248 41008410 -141406832 + AluSx SINE Alu 135 297 -15 3985 210 62 9 chr6 41008410 41008524 -141406718 + L1M4 LINE L1 1726 1833 -4813 238 31 0 0 chr6 41008526 41008558 -141406684 + L1M4 LINE L1 1911 1942 -4704 252 0 0 0 chr6 41008572 41008600 -141406642 + (A)n Simple_repeat Simple_repeat 1 28 0 944 201 9 147 chr6 41008600 41008948 -141406294 + AluJo SINE Alu 2 301 -1 712 234 5 0 chr6 41008954 41009159 -141406083 + L1 LINE L1 3028 3233 -2913 978 247 47 23 chr6 41009212 41009700 -141405542 - MLT1G1 LTR MaLR -4 545 1 2263 99 3 0 chr6 41009818 41010123 -141405119 - AluSp SINE Alu 0 306 1 456 254 40 0 chr6 41010222 41010348 -141404894 + MIR SINE MIR 9 139 -123 2210 125 3 0 chr6 41010626 41010922 -141404320 - AluSx SINE Alu -15 297 1 241 303 161 7 chr6 41011037 41011192 -141404050 + L1 LINE L1 4800 4978 -1168 2274 121 20 0 chr6 41011246 41011551 -141403691 + AluSx SINE Alu 1 311 -1 564 277 115 69 chr6 41011551 41012056 -141403186 + HAL1 LINE L1 11 538 -1969 320 224 0 13 chr6 41012082 41012158 -141403084 + HAL1 LINE L1 650 724 -1783 816 141 0 15 chr6 41012174 41012309 -141402933 - FLAM_C SINE Alu 0 133 1 499 306 107 13 chr6 41012322 41012673 -141402569 + L1P3 LINE L1 5377 5772 -382 1790 150 11 7 chr6 41013176 41013450 -141401792 - AluJo SINE Alu -31 281 7 2289 96 0 38 chr6 41013456 41013795 -141401447 - AluY SINE Alu 0 327 1 648 209 0 22 chr6 41013798 41013932 -141401310 - AluJo/FLAM SINE Alu -170 132 2 732 269 207 20 chr6 41014000 41014454 -141400788 - LTR67 LTR ERVL -12 545 7 2405 108 0 6 chr6 41014455 41014770 -141400472 + AluSq SINE Alu 1 313 0 2086 119 7 10 chr6 41014995 41015298 -141399944 + AluJo SINE Alu 1 302 -10 2342 107 7 13 chr6 41015682 41015991 -141399251 + AluSx SINE Alu 1 307 -5 2096 137 3 0 chr6 41016168 41016468 -141398774 - AluJo SINE Alu -11 301 1 8225 51 11 2 chr6 41016577 41017575 -141397667 - LTR13 LTR ERVK 0 1007 1 2183 166 21 30 chr6 41017699 41017736 -141397506 + L1M3 LINE L1 5291 5327 -844 1591 199 34 0 chr6 41017736 41018027 -141397215 + AluJo SINE Alu 2 302 -10 2183 166 21 30 chr6 41018027 41018417 -141396825 + L1M3 LINE L1 5327 5714 -457 5648 274 70 67 chr6 41018420 41021361 -141393881 - LTR10B-int LTR ERV1 -147 6502 3551 3039 239 60 23 chr6 41021340 41022562 -141392680 - LTR10B-int LTR ERV1 -4135 2514 986 * 1004 247 88 47 chr6 41022628 41022996 -141392246 - LTR10B-int LTR ERV1 -6768 1017 588 2063 70 0 37 chr6 41022996 41023267 -141391975 - AluY SINE Alu -9 302 42 1004 247 88 47 chr6 41023267 41023363 -141391879 - LTR10B-int LTR ERV1 -7197 588 497 1426 219 80 6 chr6 41023363 41023688 -141391554 - LTR10B-int LTR ERV1 -6297 352 4 3411 112 22 16 chr6 41023688 41024189 -141391053 - LTR10B LTR ERV1 0 505 2 1467 101 48 10 chr6 41024189 41024397 -141390845 + AluSg/x SINE Alu 84 299 -13 308 158 0 0 chr6 41024398 41024455 -141390787 + L1MB2 LINE L1 6112 6168 -3 2356 84 0 0 chr6 41025040 41025327 -141389915 - AluY SINE Alu -24 287 1 1941 154 0 3 chr6 41025329 41025628 -141389614 - AluJo SINE Alu -14 298 1 2342 97 0 0 chr6 41026855 41027154 -141388088 - AluY SINE Alu -11 300 2 2335 101 0 3 chr6 41027457 41027763 -141387479 + AluSq SINE Alu 1 305 -8 480 239 51 0 chr6 41027791 41027908 -141387334 + MLT2E LTR ERVL 19 141 -487 1813 153 3 33 chr6 41027910 41028217 -141387025 - AluJo SINE Alu -14 298 1 1879 150 18 4 chr6 41029203 41029483 -141385759 - AluJb SINE Alu -28 284 1 2357 112 7 0 chr6 41030043 41030347 -141384895 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 41031157 41031186 -141384056 + AT_rich Low_complexity Low_complexity 1 29 0 1595 190 18 7 chr6 41033248 41033527 -141381715 + AluJb SINE Alu 1 282 -30 24 0 0 0 chr6 41033532 41033556 -141381686 + GC_rich Low_complexity Low_complexity 1 24 0 509 83 56 0 chr6 41033557 41033629 -141381613 - MADE1 DNA Mariner -4 76 1 528 299 65 53 chr6 41034238 41034632 -141380610 + L1M4 LINE L1 4559 4962 -1184 2253 99 7 3 chr6 41034632 41034934 -141380308 + AluSx SINE Alu 1 303 -9 528 299 65 53 chr6 41034934 41035014 -141380228 + L1M4 LINE L1 4962 5039 -1107 28 29 0 0 chr6 41035015 41035050 -141380192 + AT_rich Low_complexity Low_complexity 1 35 0 852 120 15 15 chr6 41035055 41035188 -141380054 - FRAM SINE Alu -23 153 21 2050 141 3 3 chr6 41035345 41035649 -141379593 + AluSx SINE Alu 2 305 -7 948 193 0 59 chr6 41035750 41035999 -141379243 + AluJo SINE Alu 2 296 -16 22 0 0 0 chr6 41036630 41036652 -141378590 + AT_rich Low_complexity Low_complexity 1 22 0 2322 89 0 13 chr6 41037385 41037699 -141377543 - AluSg SINE Alu 0 310 1 866 206 6 12 chr6 41037848 41038008 -141377234 - MER58A DNA MER1_type 0 159 1 330 65 48 0 chr6 41038100 41038162 -141377080 + (TA)n Simple_repeat Simple_repeat 1 65 0 1915 112 65 0 chr6 41038183 41038443 -141376799 + AluSx SINE Alu 1 277 -35 315 0 0 0 chr6 41038446 41038481 -141376761 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1415 162 63 86 chr6 41039155 41039538 -141375704 + MLT1A2 LTR MaLR 1 374 0 975 148 0 0 chr6 41039803 41039945 -141375297 + FRAM SINE Alu 5 146 -30 1358 154 23 5 chr6 41040412 41040626 -141374616 + MER20 DNA MER1_type 2 219 0 194 236 83 28 chr6 41042285 41042357 -141372885 - MIR3 SINE MIR -6 202 127 21 57 0 0 chr6 41042485 41042520 -141372722 + AT_rich Low_complexity Low_complexity 1 35 0 311 191 191 43 chr6 41042537 41042652 -141372590 + MER112 DNA MER1_type 8 139 -121 842 150 0 0 chr6 41043343 41043476 -141371766 + FLAM_C SINE Alu 1 133 0 279 301 16 57 chr6 41043554 41043677 -141371565 - L2 LINE L2 -5 3267 3150 2259 72 43 4 chr6 41044870 41045171 -141370071 - AluSp SINE Alu 0 314 3 1930 161 0 16 chr6 41045458 41045762 -141369480 - AluJb SINE Alu -11 301 3 776 123 25 16 chr6 41045775 41045897 -141369345 - FLAM_C SINE Alu -18 125 3 372 191 0 0 chr6 41045898 41045987 -141369255 + (TA)n Simple_repeat Simple_repeat 1 89 0 2263 113 0 0 chr6 41045987 41046287 -141368955 - AluSx SINE Alu -12 300 1 2000 138 0 10 chr6 41046874 41047171 -141368071 + AluJo SINE Alu 1 294 -18 231 211 125 67 chr6 41048876 41048980 -141366262 + L2 LINE L2 3187 3296 -17 1057 194 27 40 chr6 41049562 41049784 -141365458 + MER20 DNA MER1_type 1 219 0 193 255 196 29 chr6 41050248 41050350 -141364892 - MIR SINE MIR -112 150 32 2295 83 10 13 chr6 41050411 41050713 -141364529 - AluSx SINE Alu -11 301 1 1644 151 52 11 chr6 41050930 41051201 -141364041 + AluJo SINE Alu 1 282 -30 222 300 22 11 chr6 41051459 41051549 -141363693 + (CATA)n Simple_repeat Simple_repeat 2 92 0 375 238 67 0 chr6 41051909 41052014 -141363228 - MIR SINE MIR -71 191 80 2029 131 3 13 chr6 41052323 41052621 -141362621 + AluJb SINE Alu 1 295 -17 2179 109 3 0 chr6 41052931 41053216 -141362026 + AluSx SINE Alu 1 286 -26 2119 117 0 7 chr6 41055091 41055381 -141359861 - AluSx SINE Alu -24 288 1 2129 102 16 23 chr6 41055549 41055879 -141359363 + AluSx SINE Alu 1 312 0 202 146 167 0 chr6 41056090 41056138 -141359104 + MIR3 SINE MIR 150 205 -3 439 53 0 18 chr6 41056353 41056410 -141358832 - U6 snRNA snRNA -51 56 1 1818 176 58 0 chr6 41056739 41057068 -141358174 - MER7A DNA MER2_type 0 346 1 1010 155 12 6 chr6 41057124 41057285 -141357957 + FRAM SINE Alu 1 157 -19 21 0 0 0 chr6 41058527 41058548 -141356694 + AT_rich Low_complexity Low_complexity 1 21 0 435 275 66 6 chr6 41059823 41060005 -141355237 + MIR SINE MIR 33 225 -37 198 0 0 0 chr6 41060007 41060029 -141355213 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 2060 114 0 54 chr6 41060549 41060864 -141354378 - AluSx SINE Alu -14 298 1 1718 163 3 10 chr6 41060866 41061167 -141354075 - AluJo SINE Alu -13 299 1 227 311 18 18 chr6 41061460 41061624 -141353618 - L1M4 LINE L1 -3863 2283 2120 2417 59 24 0 chr6 41061651 41061941 -141353301 - AluY SINE Alu -14 297 1 1171 169 14 86 chr6 41062136 41062242 -141353000 + L1 LINE L1 3916 4028 -2118 2007 159 0 6 chr6 41062242 41062556 -141352686 - AluJo SINE Alu 0 312 1 1171 169 14 86 chr6 41062556 41062739 -141352503 + L1 LINE L1 4028 4184 -1962 * 2438 147 81 31 chr6 41062735 41063234 -141352008 + L1PA16 LINE L1 4950 5479 -687 2605 60 0 10 chr6 41063234 41063548 -141351694 + AluY SINE Alu 1 311 0 2438 147 81 31 chr6 41063548 41063797 -141351445 + L1PA16 LINE L1 5479 5714 -452 2183 116 10 0 chr6 41063803 41064096 -141351146 - AluSx SINE Alu -16 296 1 1405 170 107 0 chr6 41064098 41064351 -141350891 - AluJo SINE Alu -21 291 12 487 98 43 8 chr6 41064369 41064447 -141350795 + L1PA16 LINE L1 5706 5781 -373 2101 151 40 8 chr6 41064857 41065228 -141350014 + L1PA16 LINE L1 5769 6151 -15 1439 190 30 30 chr6 41065269 41065569 -141349673 + AluJo SINE Alu 1 300 -12 1666 147 71 4 chr6 41065649 41065946 -141349296 - AluSx SINE Alu 0 315 1 854 295 149 55 chr6 41066141 41066820 -141348422 - HAL1 LINE L1 -857 1650 908 232 281 53 0 chr6 41066990 41067047 -141348195 - L2 LINE L2 -8 3305 3246 2524 68 0 7 chr6 41067143 41067450 -141347792 + AluY SINE Alu 1 305 -6 201 71 0 89 chr6 41067513 41067569 -141347673 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 620 167 81 63 chr6 41067626 41067800 -141347442 - MER5B DNA MER1_type -1 177 1 287 167 33 0 chr6 41068907 41068967 -141346275 - L2 LINE L2 -787 2527 2466 1866 132 4 0 chr6 41068967 41069225 -141346017 + AluSx SINE Alu 1 259 -53 2349 112 21 21 chr6 41069389 41069764 -141345478 - THE1C LTR MaLR 0 375 1 335 300 0 20 chr6 41069790 41069890 -141345352 - MIR SINE MIR -112 150 53 2264 112 0 3 chr6 41070062 41070374 -141344868 - AluSx SINE Alu -1 311 1 1860 173 6 16 chr6 41070739 41071052 -141344190 - AluJo SINE Alu -2 310 1 1658 183 116 66 chr6 41071101 41071701 -141343541 + L1MD3 LINE L1 5980 6549 -1446 2138 106 0 3 chr6 41071701 41071985 -141343257 + AluSg SINE Alu 1 283 -27 1658 183 116 66 chr6 41071985 41072014 -141343228 + L1MD3 LINE L1 6549 6575 -1420 279 0 0 0 chr6 41072014 41072045 -141343197 + (CA)n Simple_repeat Simple_repeat 2 32 0 1658 183 116 66 chr6 41072045 41072889 -141342353 + L1MD3 LINE L1 6575 7743 -252 2287 117 0 7 chr6 41072889 41073198 -141342044 + AluSx SINE Alu 1 307 -5 1658 183 116 66 chr6 41073198 41073454 -141341788 + L1MD3 LINE L1 7743 7985 -10 24 0 0 0 chr6 41073602 41073626 -141341616 + AT_rich Low_complexity Low_complexity 1 24 0 366 274 96 13 chr6 41073801 41073958 -141341284 - MIR3 SINE MIR -10 198 29 1032 187 0 6 chr6 41074180 41074351 -141340891 - FAM SINE Alu -5 170 1 271 389 89 0 chr6 41074507 41074664 -141340578 - L2 LINE L2 0 3272 3102 182 133 33 0 chr6 41074795 41074825 -141340417 - MIR SINE MIR -138 70 40 438 258 117 6 chr6 41074924 41075087 -141340155 + MIR SINE MIR 50 230 -32 189 354 97 18 chr6 41075095 41075208 -141340034 + L2 LINE L2 3187 3308 -5 1649 179 10 24 chr6 41075238 41075534 -141339708 - AluJb SINE Alu -20 292 1 2196 110 0 3 chr6 41075562 41075854 -141339388 - AluSx SINE Alu -21 291 1 22 0 0 0 chr6 41077279 41077301 -141337941 + AT_rich Low_complexity Low_complexity 1 22 0 1447 137 11 102 chr6 41077334 41077618 -141337624 + AluJo SINE Alu 30 287 -25 2290 93 17 0 chr6 41078203 41078494 -141336748 + AluSx SINE Alu 5 300 -12 1640 130 29 76 chr6 41078546 41078861 -141336381 + AluJb SINE Alu 1 300 -12 1638 199 0 13 chr6 41079085 41079386 -141335856 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr6 41079512 41079533 -141335709 + AT_rich Low_complexity Low_complexity 1 21 0 807 248 12 79 chr6 41079632 41079819 -141335423 + MIR SINE MIR 12 179 -83 2378 76 0 0 chr6 41079819 41080121 -141335121 + AluY SINE Alu 1 302 -9 807 248 12 79 chr6 41080121 41080187 -141335055 + MIR SINE MIR 179 248 -14 241 252 130 30 chr6 41080274 41080405 -141334837 - L1MC/D LINE L1 -2089 5719 5576 1502 166 14 62 chr6 41080431 41080721 -141334521 - AluJb SINE Alu -17 295 20 937 206 25 10 chr6 41080772 41080971 -141334271 - AluJo SINE Alu -90 222 21 751 264 19 5 chr6 41081002 41081214 -141334028 + MER90 LTR ERV1 1 215 -399 884 109 0 0 chr6 41081214 41081333 -141333909 + AluSg/x SINE Alu 135 253 -57 1672 147 57 14 chr6 41081407 41081760 -141333482 + MER90 LTR ERV1 247 614 0 261 159 0 0 chr6 41081893 41081937 -141333305 - L1ME LINE L1 -461 5660 5617 2120 135 0 3 chr6 41081947 41082243 -141332999 - AluSx SINE Alu -17 295 1 2439 59 3 0 chr6 41082314 41082603 -141332639 + AluY SINE Alu 1 290 -21 2368 57 0 0 chr6 41082626 41082937 -141332305 - AluY SINE Alu 0 311 1 21 36 0 0 chr6 41083208 41083236 -141332006 + AT_rich Low_complexity Low_complexity 1 28 0 4713 147 22 55 chr6 41083372 41084178 -141331064 - L1MB2 LINE L1 -35 6136 5305 758 164 8 8 chr6 41084178 41084300 -141330942 - FLAM_C SINE Alu -11 122 1 4713 147 22 55 chr6 41084300 41084608 -141330634 - L1MB2 LINE L1 -866 5305 5070 2210 108 0 34 chr6 41084608 41084931 -141330311 - AluSq SINE Alu -1 312 1 4713 147 22 55 chr6 41084931 41085140 -141330102 - L1MB2 LINE L1 -1101 5070 4856 2284 106 7 0 chr6 41085574 41085875 -141329367 - AluSx SINE Alu -9 303 1 1856 133 0 4 chr6 41085972 41086242 -141329000 - AluJb SINE Alu -21 291 23 189 0 0 0 chr6 41086368 41086389 -141328853 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr6 41086743 41086766 -141328476 + AT_rich Low_complexity Low_complexity 1 23 0 761 226 7 7 chr6 41086844 41086990 -141328252 + FRAM SINE Alu 1 142 -34 363 154 0 0 chr6 41086990 41087055 -141328187 + GA-rich Low_complexity Low_complexity 1 65 0 2248 89 10 0 chr6 41087126 41087418 -141327824 + AluSg SINE Alu 1 295 -15 468 183 49 0 chr6 41087528 41087610 -141327632 + MIR SINE MIR 41 126 -136 1538 201 94 8 chr6 41087668 41088447 -141326795 + L1ME1 LINE L1 5113 6165 -1 2442 83 0 3 chr6 41088533 41088834 -141326408 + AluSc SINE Alu 1 300 -9 223 260 104 0 chr6 41089281 41089358 -141325884 - MIR SINE MIR 0 262 178 23 54 0 0 chr6 41089360 41089397 -141325845 + AT_rich Low_complexity Low_complexity 1 37 0 2354 112 3 0 chr6 41089466 41089778 -141325464 + AluSq SINE Alu 1 313 0 2109 126 3 3 chr6 41090121 41090430 -141324812 + AluSx SINE Alu 3 311 -1 189 0 0 0 chr6 41091178 41091199 -141324043 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1693 140 75 29 chr6 41091766 41091910 -141323332 + AluJb SINE Alu 1 137 -175 1672 156 0 11 chr6 41091910 41092185 -141323057 + AluSx SINE Alu 1 272 -40 1693 140 75 29 chr6 41092185 41092319 -141322923 + AluJb SINE Alu 137 292 -20 5281 174 81 43 chr6 41092366 41093766 -141321476 - Charlie1a DNA MER1_type -1 1454 2 2555 66 0 0 chr6 41094316 41094619 -141320623 - AluSg SINE Alu -6 304 2 1794 170 10 20 chr6 41095276 41095576 -141319666 - AluJo SINE Alu -15 297 1 554 240 111 12 chr6 41096007 41096178 -141319064 - MIR SINE MIR 0 262 75 218 296 10 71 chr6 41096824 41096922 -141318320 + MIR3 SINE MIR 97 165 -43 6812 124 58 15 chr6 41096973 41097833 -141317409 - Tigger3b DNA MER2_type -1797 1231 305 1825 179 7 13 chr6 41097833 41098141 -141317101 - AluJo SINE Alu -6 306 1 6812 124 58 15 chr6 41098141 41098460 -141316782 - Tigger3b DNA MER2_type -2723 305 1 22 0 0 0 chr6 41098551 41098573 -141316669 + AT_rich Low_complexity Low_complexity 1 22 0 1997 100 44 0 chr6 41098581 41098900 -141316342 + AluSx SINE Alu 1 331 0 388 270 104 52 chr6 41099036 41099175 -141316067 + MIR SINE MIR 31 186 -76 880 229 188 8 chr6 41099175 41099420 -141315822 + AluJo SINE Alu 2 290 -12 388 270 104 52 chr6 41099420 41099491 -141315751 + MIR SINE MIR 186 252 -10 205 281 173 14 chr6 41100109 41100248 -141314994 + MIR SINE MIR 21 181 -81 217 268 25 115 chr6 41100330 41100487 -141314755 + L2 LINE L2 2747 2889 -425 234 320 79 3 chr6 41100774 41100914 -141314328 + MIR SINE MIR 6 154 -71 642 259 37 59 chr6 41101829 41102150 -141313092 + L1MC4 LINE L1 7276 7589 -453 902 181 0 30 chr6 41102150 41102316 -141312926 + FRAM SINE Alu 10 170 -6 640 260 108 17 chr6 41102316 41102612 -141312630 + L1MC4 LINE L1 7577 7899 -143 2289 119 0 3 chr6 41102691 41103001 -141312241 + AluSx SINE Alu 1 309 -3 382 311 90 52 chr6 41104600 41104867 -141310375 - HAL1 LINE L1 -1041 1466 1190 808 197 6 39 chr6 41104875 41105053 -141310189 - MER5B DNA MER1_type -6 172 1 1679 150 16 53 chr6 41105118 41105438 -141309804 - AluJo SINE Alu -4 308 1 2039 152 0 0 chr6 41105525 41105828 -141309414 + AluSq SINE Alu 1 303 -10 2473 82 0 0 chr6 41105828 41106131 -141309111 + AluY SINE Alu 1 303 -8 1293 140 236 0 chr6 41106936 41107186 -141308056 + AluJo SINE Alu 2 310 -2 2200 107 0 16 chr6 41107323 41107633 -141307609 - AluSx SINE Alu -6 306 2 426 268 49 79 chr6 41107900 41108165 -141307077 + L1ME4a LINE L1 5855 6111 -10 263 303 20 0 chr6 41108321 41108420 -141306822 - L2 LINE L2 -1008 2306 2206 724 200 34 11 chr6 41108507 41108682 -141306560 + MER46B DNA MER2_type 2 55 -181 9156 35 2 1 chr6 41108798 41109868 -141305374 + MER11C LTR ERVK 1 1071 0 1356 161 67 42 chr6 41109937 41110222 -141305020 + AluJo SINE Alu 1 292 -20 25 51 0 0 chr6 41110778 41110817 -141304425 + AT_rich Low_complexity Low_complexity 1 39 0 581 106 16 81 chr6 41110817 41110940 -141304302 + MER46B DNA MER2_type 43 157 -79 508 105 0 35 chr6 41111140 41111226 -141304016 + MER46B DNA MER2_type 154 236 0 1311 118 0 5 chr6 41111474 41111661 -141303581 - AluSp SINE Alu -4 309 124 564 248 8 0 chr6 41111764 41111889 -141303353 + FLAM_A SINE Alu 1 126 -7 843 149 8 0 chr6 41111898 41112032 -141303210 + AluSq/x SINE Alu 1 135 -178 24 0 0 0 chr6 41112032 41112056 -141303186 + AT_rich Low_complexity Low_complexity 1 24 0 608 215 44 30 chr6 41112085 41112220 -141303022 - L2 LINE L2 0 3313 3177 216 269 90 26 chr6 41112403 41112481 -141302761 + L2 LINE L2 3172 3254 -18 366 269 143 8 chr6 41113125 41113244 -141301998 + MIR3 SINE MIR 61 195 -13 2157 177 58 56 chr6 41113424 41113466 -141301776 - MLT1D LTR MaLR -1 504 464 2315 91 3 22 chr6 41113466 41113784 -141301458 + AluSx SINE Alu 1 312 0 2461 68 0 13 chr6 41113788 41114099 -141301143 + AluY SINE Alu 1 307 -4 2157 177 58 56 chr6 41114099 41114553 -141300689 - MLT1D LTR MaLR -43 462 2 1054 92 0 0 chr6 41114807 41114938 -141300304 + AluSg SINE Alu 1 131 -179 2226 69 10 30 chr6 41114953 41115258 -141299984 + AluY SINE Alu 1 299 -12 4624 218 104 22 chr6 41115258 41115647 -141299595 - L1M4 LINE L1 -2017 4129 3774 1914 156 3 28 chr6 41115647 41115967 -141299275 + AluJb SINE Alu 1 312 0 4624 218 104 22 chr6 41115967 41116107 -141299135 - L1M4 LINE L1 -2372 3774 3647 2233 111 3 0 chr6 41116107 41116405 -141298837 - AluSp SINE Alu -14 299 1 4624 218 104 22 chr6 41116405 41117123 -141298119 - L1M4 LINE L1 -2499 3647 2726 2504 69 3 0 chr6 41117123 41117426 -141297816 - AluSp SINE Alu -9 304 1 4624 218 104 22 chr6 41117426 41117727 -141297515 - L1M4 LINE L1 -3420 2726 2451 1055 202 67 13 chr6 41117747 41117985 -141297257 + L1MB7 LINE L1 5877 6127 -57 815 152 0 15 chr6 41118015 41118147 -141297095 - FLAM_C SINE Alu -3 130 1 395 94 0 0 chr6 41118147 41118211 -141297031 + L1MB7 LINE L1 6112 6175 -9 2195 98 17 7 chr6 41118349 41118646 -141296596 + AluSq SINE Alu 1 300 -13 722 283 41 14 chr6 41118646 41118865 -141296377 + MIR SINE MIR 22 246 -16 722 193 0 22 chr6 41118921 41119056 -141296186 - FLAM_C SINE Alu 0 133 2 1953 153 3 33 chr6 41119135 41119442 -141295800 - AluJb SINE Alu -14 298 1 309 349 71 32 chr6 41120052 41120333 -141294909 - L2 LINE L2 -338 2976 2685 692 237 149 17 chr6 41120334 41120749 -141294493 + L2 LINE L2 2742 3213 -100 272 374 123 0 chr6 41120749 41120912 -141294330 - MIR SINE MIR -78 184 2 2394 71 3 10 chr6 41122152 41122447 -141292795 - AluSc SINE Alu -16 293 1 1971 132 65 3 chr6 41122610 41122950 -141292292 + MER47A DNA MER2_type 3 363 -3 377 270 112 45 chr6 41123061 41123351 -141291891 + L1ME LINE L1 5511 5822 -299 2228 82 27 3 chr6 41123467 41123761 -141291481 + AluSc SINE Alu 1 301 -8 426 20 0 0 chr6 41123866 41123917 -141291325 + (TG)n Simple_repeat Simple_repeat 2 52 0 505 268 54 0 chr6 41124078 41124190 -141291052 - L2 LINE L2 0 3272 3155 1618 92 0 0 chr6 41124457 41124653 -141290589 + AluSq SINE Alu 1 196 -117 1257 138 11 0 chr6 41124653 41124834 -141290408 + AluSg/x SINE Alu 113 295 -17 269 24 0 0 chr6 41125489 41125531 -141289711 - L1PA4 LINE L1 0 6155 6114 259 48 0 0 chr6 41125537 41125579 -141289663 - L1PA3 LINE L1 0 6155 6114 275 359 26 26 chr6 41125963 41126080 -141289162 + L3 LINE CR1 1338 1454 -123 22 0 0 0 chr6 41126947 41126969 -141288273 + AT_rich Low_complexity Low_complexity 1 22 0 2201 98 23 13 chr6 41127314 41127620 -141287622 + AluSq SINE Alu 5 313 0 1909 167 0 16 chr6 41127835 41128152 -141287090 + AluJb SINE Alu 1 312 0 2442 64 0 0 chr6 41128731 41129026 -141286216 - AluY SINE Alu -16 295 1 23 33 0 0 chr6 41129268 41129298 -141285944 + AT_rich Low_complexity Low_complexity 1 30 0 2302 78 3 20 chr6 41129502 41129808 -141285434 + AluY SINE Alu 1 301 -10 191 261 22 0 chr6 41129967 41130013 -141285229 - L2 LINE L2 -16 3256 3210 1834 158 44 0 chr6 41130126 41130423 -141284819 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr6 41130449 41130485 -141284757 + AT_rich Low_complexity Low_complexity 1 36 0 449 230 53 18 chr6 41130771 41130884 -141284358 + MIR3 SINE MIR 63 179 -29 554 194 366 11 chr6 41131459 41131634 -141283608 - MIR SINE MIR 0 262 26 639 260 59 55 chr6 41181807 41182175 -141233067 - MLT1H1 LTR MaLR -204 363 1 448 301 85 45 chr6 41182175 41182421 -141232821 - MLT1H1-int LTR MaLR 0 1371 1116 2208 123 3 0 chr6 41182463 41182756 -141232486 + AluSx SINE Alu 1 294 -18 1328 125 11 0 chr6 41182851 41183035 -141232207 - AluSg/x SINE Alu -2 310 125 446 244 40 0 chr6 41183043 41183169 -141232073 - MLT1H LTR MaLR -342 207 31 793 138 6 24 chr6 41183347 41183374 -141231868 + MER53 DNA DNA 1 27 -162 2286 85 0 14 chr6 41183374 41183698 -141231544 + AluSx SINE Alu 1 312 0 793 138 6 24 chr6 41183698 41183837 -141231405 + MER53 DNA DNA 27 164 -25 231 145 116 87 chr6 41183833 41183902 -141231340 - MER53 DNA DNA -94 95 25 * 2701 7 0 0 chr6 41183902 41184241 -141231001 - AluYa5 SINE Alu 0 339 1 2037 138 3 3 chr6 41184243 41184539 -141230703 - AluJb SINE Alu -16 296 1 2229 125 0 0 chr6 41184551 41184846 -141230396 - AluSx SINE Alu -17 295 1 588 136 9 0 chr6 41184966 41185076 -141230166 + L1PA14 LINE L1 6051 6161 0 653 214 94 44 chr6 41185087 41185155 -141230087 + L1MC4a LINE L1 4889 4952 -1194 2538 64 0 0 chr6 41185155 41185450 -141229792 - AluY SINE Alu -16 295 1 653 214 94 44 chr6 41185450 41185656 -141229586 + L1MC4a LINE L1 4952 5177 -969 2378 105 0 0 chr6 41185666 41185961 -141229281 + AluSq SINE Alu 1 295 -18 921 156 21 0 chr6 41185961 41186102 -141229140 + AluSg/x SINE Alu 134 277 -35 820 113 56 0 chr6 41186102 41186262 -141228980 + L1MA4A LINE L1 6124 6292 -11 965 259 106 61 chr6 41186332 41186823 -141228419 + LTR67 LTR ERVL 45 557 0 229 317 20 30 chr6 41186823 41186924 -141228318 + MIR SINE MIR 48 147 -61 385 229 55 9 chr6 41187386 41187495 -141227747 + L1ME4a LINE L1 4587 4700 -1446 2456 57 0 0 chr6 41187558 41187865 -141227377 + AluY SINE Alu 1 307 0 501 47 0 0 chr6 41187894 41187958 -141227284 + (TA)n Simple_repeat Simple_repeat 2 65 0 2516 92 0 0 chr6 41187958 41188263 -141226979 - AluSg SINE Alu -5 305 1 265 284 28 68 chr6 41188344 41188520 -141226722 + L1P LINE L1 4880 5048 -1098 2076 134 3 0 chr6 41188526 41188818 -141226424 + AluSx SINE Alu 1 293 -19 2494 100 0 0 chr6 41188840 41189151 -141226091 + AluSq SINE Alu 1 311 -2 810 286 54 53 chr6 41189165 41189892 -141225350 + L1ME4a LINE L1 5374 6114 -7 2507 56 10 23 chr6 41189914 41190219 -141225023 - AluSp SINE Alu -12 301 1 2127 108 15 20 chr6 41190241 41190582 -141224660 - L1PA13 LINE L1 -1 6162 5824 536 299 141 46 chr6 41190592 41190960 -141224282 + L1PA13 LINE L1 5395 5797 -2011 2151 124 10 0 chr6 41190960 41191250 -141223992 - AluSx SINE Alu -19 293 1 995 212 81 28 chr6 41191309 41191455 -141223787 + MLT1J LTR MaLR 1 138 -373 207 0 0 0 chr6 41191455 41191478 -141223764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 995 212 81 28 chr6 41191478 41191727 -141223515 + MLT1J LTR MaLR 138 509 -2 1878 127 7 20 chr6 41191732 41192024 -141223218 - THE1B LTR MaLR 0 364 77 350 232 21 0 chr6 41192036 41192131 -141223111 + L1MC4a LINE L1 5835 5931 -1877 193 278 148 26 chr6 41192521 41192636 -141222606 - L2 LINE L2 -5 3308 3180 267 224 30 0 chr6 41192668 41192735 -141222507 - L2 LINE L2 -246 3067 2999 2044 210 48 17 chr6 41192852 41192895 -141222347 + L1ME1 LINE L1 5435 5475 -689 1810 141 44 24 chr6 41192895 41193193 -141222049 + AluJb SINE Alu 1 304 -8 2044 210 48 17 chr6 41193193 41193690 -141221552 + L1ME1 LINE L1 5475 5972 -192 1917 157 24 0 chr6 41193742 41194035 -141221207 + AluJb SINE Alu 7 306 -6 2148 121 3 0 chr6 41194035 41194324 -141220918 + AluSx SINE Alu 1 290 -22 473 229 74 13 chr6 41194337 41194518 -141220724 + L1ME1 LINE L1 5988 6331 -3 1637 137 67 60 chr6 41194575 41194875 -141220367 - AluJo SINE Alu -10 302 1 1288 130 0 0 chr6 41195628 41195805 -141219437 + AluJb SINE Alu 136 312 0 451 297 113 11 chr6 41196068 41196253 -141218989 - MIR SINE MIR 0 262 59 206 279 105 0 chr6 41196574 41196660 -141218582 + L2 LINE L2 2965 3059 -213 2487 93 0 0 chr6 41196868 41197180 -141218062 + AluSq SINE Alu 1 312 -1 2399 92 10 0 chr6 41197234 41197529 -141217713 + AluSq SINE Alu 2 299 -14 30 0 0 0 chr6 41197610 41197640 -141217602 + AT_rich Low_complexity Low_complexity 1 30 0 1810 117 32 0 chr6 41197649 41197897 -141217345 - AluSx SINE Alu -55 257 2 616 247 28 39 chr6 41197937 41198119 -141217123 + MIR SINE MIR 25 204 -58 280 340 86 36 chr6 41198226 41198792 -141216450 - L2 LINE L2 -265 3007 2401 1535 208 21 3 chr6 41198792 41199081 -141216161 + AluJo SINE Alu 5 298 -14 280 340 86 36 chr6 41199081 41199106 -141216136 - L2 LINE L2 -871 2401 2379 368 353 0 7 chr6 41200024 41200177 -141215065 + (TG)n Simple_repeat Simple_repeat 2 153 0 299 263 29 58 chr6 41200828 41200965 -141214277 - L2 LINE L2 -238 3034 2902 219 279 229 25 chr6 41200973 41201095 -141214147 - MIR3 SINE MIR -41 167 21 339 286 76 0 chr6 41201181 41201286 -141213956 + MIR SINE MIR 37 149 -59 265 261 57 11 chr6 41201342 41201430 -141213812 + L2 LINE L2 3180 3271 -1 1021 181 31 48 chr6 41201959 41202186 -141213056 + L1ME2 LINE L1 5931 6153 -11 530 332 14 14 chr6 41203496 41203710 -141211532 - MIR SINE MIR 0 262 49 2285 92 20 3 chr6 41203768 41204060 -141211182 + AluSx SINE Alu 1 297 -15 2334 90 7 0 chr6 41204162 41204452 -141210790 - AluSp SINE Alu -21 292 1 252 219 14 55 chr6 41204491 41204564 -141210678 + MIR SINE MIR 84 153 -109 910 274 61 51 chr6 41204604 41205013 -141210229 + L2 LINE L2 2886 3298 -15 180 0 0 0 chr6 41205013 41205033 -141210209 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 340 287 86 29 chr6 41205210 41205490 -141209752 + L2 LINE L2 2765 3062 -210 220 220 0 102 chr6 41205581 41205640 -141209602 + L2 LINE L2 3242 3294 -19 2483 87 0 0 chr6 41205650 41205961 -141209281 + AluY SINE Alu 1 311 0 25 0 0 0 chr6 41205961 41205986 -141209256 + AT_rich Low_complexity Low_complexity 1 25 0 201 304 0 43 chr6 41206012 41206081 -141209161 + L2 LINE L2 3205 3270 -2 272 299 84 40 chr6 41206630 41206809 -141208433 + MIR SINE MIR 71 255 -7 1009 156 0 73 chr6 41207292 41207471 -141207771 + AluJb SINE Alu 134 299 -13 412 318 0 8 chr6 41207501 41207627 -141207615 + MIR SINE MIR 83 207 -55 216 206 0 68 chr6 41208857 41208930 -141206312 - MIR SINE MIR -86 122 55 396 0 0 0 chr6 41209235 41209279 -141205963 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 77 0 0 chr6 41210823 41210849 -141204393 + (CGGG)n Simple_repeat Simple_repeat 1 26 0 188 336 154 0 chr6 41212030 41212179 -141203063 - L3 LINE CR1 -8 1569 1398 2375 101 3 0 chr6 41213126 41213433 -141201809 - AluSx SINE Alu -4 308 1 198 245 57 0 chr6 41213485 41213538 -141201704 + L2 LINE L2 3141 3196 -76 440 295 93 22 chr6 41213578 41213761 -141201481 + MIR SINE MIR 30 225 -37 275 228 18 0 chr6 41213836 41213893 -141201349 + MER94 DNA DNA 19 76 -58 221 203 102 17 chr6 41213963 41214022 -141201220 + L2 LINE L2 3207 3270 -2 183 80 0 0 chr6 41214382 41214407 -141200835 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 236 286 16 0 chr6 41214649 41214712 -141200530 + G-rich Low_complexity Low_complexity 5 68 0 2088 139 7 0 chr6 41215588 41215898 -141199344 + AluSx SINE Alu 1 312 0 580 229 169 11 chr6 41216049 41216212 -141199030 - MIR SINE MIR -1 261 65 2064 95 32 3 chr6 41216212 41216496 -141198746 - AluSg SINE Alu -18 292 1 580 229 169 11 chr6 41216496 41216515 -141198727 - MIR SINE MIR -197 65 50 1737 159 17 20 chr6 41216862 41217157 -141198085 - AluJb SINE Alu -18 294 1 2158 132 6 3 chr6 41217216 41217527 -141197715 + AluJb SINE Alu 1 312 0 243 261 0 0 chr6 41217668 41217737 -141197505 + L3b LINE CR1 1310 1378 -205 2089 138 10 7 chr6 41219308 41219605 -141195637 - AluSx SINE Alu -14 298 1 409 258 11 0 chr6 41220337 41220430 -141194812 - MER91B DNA MER1_type 0 190 97 362 256 16 78 chr6 41220463 41220592 -141194650 - MER91B DNA MER1_type -69 121 1 1308 205 118 23 chr6 41221493 41221829 -141193413 - MER21B LTR ERV1 -109 754 386 4785 60 22 0 chr6 41221829 41222450 -141192792 - PABL_A LTR ERV1 0 660 26 917 216 138 112 chr6 41222481 41222829 -141192413 - MER21B LTR ERV1 -498 365 9 1092 145 9 1 chr6 41223593 41223822 -141191420 - AluJb SINE Alu -10 302 43 299 296 168 14 chr6 41223869 41224089 -141191153 - L1ME LINE L1 -412 5758 5505 2228 110 0 17 chr6 41224108 41224409 -141190833 - AluSx SINE Alu -10 302 7 282 137 0 0 chr6 41224462 41224513 -141190729 + L1MA4 LINE L1 6248 6298 -2 1692 161 4 0 chr6 41224603 41224852 -141190390 - AluJb SINE Alu -62 250 1 278 259 238 14 chr6 41224857 41224912 -141190330 - MER5A DNA MER1_type -2 187 146 2428 76 13 3 chr6 41224912 41225215 -141190027 + AluSx SINE Alu 1 306 -6 278 259 238 14 chr6 41225215 41225302 -141189940 - MER5A DNA MER1_type -43 146 13 244 268 28 0 chr6 41225448 41225519 -141189723 + L2 LINE L2 2288 2360 -954 2388 86 0 3 chr6 41225911 41226212 -141189030 - AluSp SINE Alu -13 300 1 721 271 41 29 chr6 41226242 41226486 -141188756 - L2 LINE L2 -1 3312 3066 1037 139 0 6 chr6 41226512 41226670 -141188572 + AluSg/x SINE Alu 156 312 0 977 188 35 41 chr6 41226674 41226828 -141188414 + L1MD2 LINE L1 5063 5216 -1143 2369 98 0 3 chr6 41226828 41227134 -141188108 - AluSc SINE Alu -4 305 1 977 188 35 41 chr6 41227134 41227211 -141188031 + L1MD2 LINE L1 5216 5292 -1067 1765 120 4 4 chr6 41227211 41227461 -141187781 + AluSg SINE Alu 44 293 -17 977 188 35 41 chr6 41227461 41228320 -141186922 + L1MD2 LINE L1 5292 6344 -15 715 190 44 0 chr6 41228320 41228457 -141186785 + L1MD2 LINE L1 6194 6347 -12 2175 122 7 0 chr6 41228457 41228760 -141186482 + AluSx SINE Alu 1 305 -7 715 190 44 0 chr6 41228760 41228773 -141186469 + L1MD2 LINE L1 6347 6358 -1 977 188 35 41 chr6 41228773 41228788 -141186454 + L1MD2 LINE L1 6344 6358 -1 2319 236 170 21 chr6 41228794 41229913 -141185329 - L2 LINE L2 -162 3151 1859 698 338 48 28 chr6 41230584 41231120 -141184122 + L1M4 LINE L1 2312 2858 -3288 1644 101 5 0 chr6 41231768 41231987 -141183255 - AluSg/x SINE Alu -8 304 85 578 202 174 131 chr6 41232097 41232169 -141183073 - MLT1I LTR MaLR -3 406 339 2637 44 0 0 chr6 41232169 41232463 -141182779 + AluY SINE Alu 1 294 -17 578 202 174 131 chr6 41232463 41232672 -141182570 - MLT1I LTR MaLR -70 339 113 645 241 30 59 chr6 41232755 41232958 -141182284 + MIR SINE MIR 9 205 -57 2251 94 3 7 chr6 41233024 41233323 -141181919 + AluSp SINE Alu 1 298 -15 2396 80 0 7 chr6 41233605 41233905 -141181337 - AluSc SINE Alu -11 298 1 369 264 27 18 chr6 41234096 41234206 -141181036 - MIR3 SINE MIR -46 162 52 2023 146 3 13 chr6 41234767 41235082 -141180160 - AluJb SINE Alu 0 312 1 2322 75 13 16 chr6 41235524 41235829 -141179413 - AluSp SINE Alu -9 304 1 1186 151 0 6 chr6 41236077 41236256 -141178986 - AluSg/x SINE Alu -1 309 132 2259 116 0 0 chr6 41236256 41236548 -141178694 - AluSx SINE Alu -20 292 1 2187 91 26 19 chr6 41236592 41236901 -141178341 + AluY SINE Alu 1 311 0 1326 235 123 43 chr6 41237054 41237543 -141177699 - LTR41 LTR ERVL -9 764 237 416 180 223 14 chr6 41237626 41237765 -141177477 - LTR41 LTR ERVL -476 297 130 2114 216 90 10 chr6 41237769 41238256 -141176986 - MLT1F1 LTR MaLR -41 526 1 189 271 83 0 chr6 41238265 41238313 -141176929 - L2 LINE L2 -10 3303 3252 578 112 11 0 chr6 41238841 41238930 -141176312 + AluJo/FLAM SINE Alu 22 111 -201 2127 87 0 31 chr6 41238932 41239243 -141175999 - AluSq SINE Alu 0 308 7 2424 72 20 3 chr6 41239253 41239559 -141175683 - AluY SINE Alu 0 311 1 1005 287 78 53 chr6 41239648 41239787 -141175455 + MLT1E LTR MaLR 1 135 -458 2342 97 0 7 chr6 41239787 41240086 -141175156 - AluSx SINE Alu -13 299 3 1005 287 78 53 chr6 41240086 41240475 -141174767 + MLT1E LTR MaLR 135 547 -46 1828 141 166 3 chr6 41240475 41240843 -141174399 + MSTA LTR MaLR 1 428 0 1005 287 78 53 chr6 41240843 41240892 -141174350 + MLT1E LTR MaLR 547 593 0 1641 154 7 67 chr6 41241289 41241587 -141173655 + AluJb SINE Alu 1 280 -32 261 0 0 0 chr6 41241587 41241616 -141173626 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2243 107 23 13 chr6 41241630 41241938 -141173304 + AluSx SINE Alu 1 311 -1 1775 143 57 46 chr6 41242588 41242632 -141172610 - THE1C LTR MaLR 0 375 333 270 0 0 0 chr6 41242632 41242662 -141172580 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1978 101 41 4 chr6 41242662 41242929 -141172313 - AluSc SINE Alu -32 277 1 1775 143 57 46 chr6 41242929 41243254 -141171988 - THE1C LTR MaLR -41 334 1 3526 151 39 32 chr6 41243254 41243534 -141171708 + L1 LINE L1 4561 4838 -1308 1894 156 14 0 chr6 41243534 41243822 -141171420 - AluJo SINE Alu -20 292 1 3526 151 39 32 chr6 41243822 41243964 -141171278 + L1 LINE L1 4838 4978 -1168 2441 96 3 0 chr6 41243964 41244266 -141170976 + AluSp SINE Alu 1 303 -10 3526 151 39 32 chr6 41244266 41244438 -141170804 + L1 LINE L1 4978 5165 -981 2255 110 0 0 chr6 41244438 41244744 -141170498 + AluSg SINE Alu 1 306 0 3526 151 39 32 chr6 41244744 41244887 -141170355 + L1 LINE L1 5165 5306 -840 2167 129 0 10 chr6 41244958 41245253 -141169989 + AluSx SINE Alu 1 292 -20 2520 90 0 3 chr6 41245258 41245570 -141169672 + AluY SINE Alu 1 311 0 661 278 192 26 chr6 41245570 41245919 -141169323 - L1MC/D LINE L1 -2007 5801 5395 198 91 0 0 chr6 41245970 41246003 -141169239 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1271 119 119 4 chr6 41246005 41246241 -141169001 + L1M2 LINE L1 5325 5587 -710 1827 127 3 24 chr6 41246242 41246595 -141168647 - MER4A LTR ERV1 0 664 261 588 122 10 10 chr6 41246595 41246693 -141168549 - MER4A LTR ERV1 -566 98 1 1269 136 10 0 chr6 41246693 41246892 -141168350 + L1M2 LINE L1 5585 5785 -512 536 202 0 0 chr6 41246894 41246988 -141168254 + AluJ/FLAM SINE Alu 2 95 -217 2924 159 66 50 chr6 41247014 41247529 -141167713 - LTR9B LTR ERV1 0 644 139 1750 81 84 37 chr6 41247529 41247802 -141167440 + AluSg SINE Alu 2 287 -23 2924 159 66 50 chr6 41247802 41247851 -141167391 - LTR9B LTR ERV1 -505 139 92 1893 53 9 4 chr6 41247851 41248078 -141167164 + AluY SINE Alu 83 310 -1 2924 159 66 50 chr6 41248078 41248134 -141167108 - LTR9B LTR ERV1 -552 92 13 2168 102 0 0 chr6 41248134 41248418 -141166824 + AluSx SINE Alu 19 302 -10 242 133 133 0 chr6 41248418 41248463 -141166779 + AluJ SINE Alu 77 127 -175 183 42 0 0 chr6 41248464 41248488 -141166754 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 92 0 3 chr6 41249004 41249349 -141165893 + AluSq SINE Alu 1 344 0 26 0 0 0 chr6 41250629 41250655 -141164587 + AT_rich Low_complexity Low_complexity 1 26 0 1171 123 41 0 chr6 41250747 41250918 -141164324 + AluJ SINE Alu 121 298 -14 1792 150 23 49 chr6 41251250 41251557 -141163685 - AluJo SINE Alu -10 302 4 1684 152 8 16 chr6 41251575 41251831 -141163411 - AluJo SINE Alu -57 255 2 232 260 0 27 chr6 41252062 41252135 -141163107 + LTR33A LTR ERVL 445 515 -8 213 265 20 0 chr6 41252139 41252188 -141163054 + L2 LINE L2 3223 3272 0 497 186 28 76 chr6 41252295 41252337 -141162905 - MER112 DNA MER1_type -35 225 183 2600 73 0 0 chr6 41252337 41252639 -141162603 - AluSg SINE Alu -8 302 1 497 186 28 76 chr6 41252639 41252741 -141162501 - MER112 DNA MER1_type -77 183 88 2585 57 0 0 chr6 41253057 41253357 -141161885 - AluY SINE Alu -11 300 1 214 276 98 16 chr6 41254665 41254788 -141160454 + L2 LINE L2 2887 3019 -253 2192 80 21 17 chr6 41255128 41255415 -141159827 + AluSx SINE Alu 10 297 -15 243 0 0 0 chr6 41255416 41255443 -141159799 + (TA)n Simple_repeat Simple_repeat 2 28 0 41 0 0 0 chr6 41255503 41255544 -141159698 + AT_rich Low_complexity Low_complexity 1 41 0 1178 176 48 4 chr6 41255563 41255790 -141159452 - AluJb SINE Alu -4 308 72 21 36 0 0 chr6 41255852 41255880 -141159362 + AT_rich Low_complexity Low_complexity 1 28 0 1216 136 0 16 chr6 41255886 41256070 -141159172 + AluSg/x SINE Alu 85 265 -47 30 27 0 0 chr6 41256080 41256117 -141159125 + AT_rich Low_complexity Low_complexity 1 37 0 478 224 60 0 chr6 41256519 41256653 -141158589 + MIR3 SINE MIR 30 171 -37 469 228 62 14 chr6 41257076 41257221 -141158021 + MIR SINE MIR 2 153 -109 246 184 13 105 chr6 41257270 41257346 -141157896 + MLT1J2 LTR MaLR 71 139 -311 1266 138 147 18 chr6 41257381 41257599 -141157643 - AluJo SINE Alu -13 299 54 239 179 0 0 chr6 41257600 41257639 -141157603 + Alu SINE Alu 2 40 -262 713 90 0 0 chr6 41257639 41257739 -141157503 + AluSg/x SINE Alu 213 312 0 377 179 0 0 chr6 41257759 41257826 -141157416 - AluJo SINE Alu -235 67 1 881 142 0 0 chr6 41258112 41258239 -141157003 + FLAM_C SINE Alu 1 127 -16 24 32 0 0 chr6 41258249 41258280 -141156962 + AT_rich Low_complexity Low_complexity 1 31 0 302 221 0 84 chr6 41258491 41258586 -141156656 - MIR3 SINE MIR -13 195 109 1898 137 23 3 chr6 41258737 41259036 -141156206 + AluSx SINE Alu 1 305 -7 546 266 103 56 chr6 41260350 41260642 -141154600 + L2 LINE L2 2939 3249 -23 2206 134 0 0 chr6 41260642 41260949 -141154293 - AluSx SINE Alu -5 307 1 546 266 103 56 chr6 41260949 41260975 -141154267 + L2 LINE L2 3249 3272 0 556 292 51 17 chr6 41261073 41261251 -141153991 + MIR SINE MIR 3 186 -76 1983 106 78 0 chr6 41261483 41261765 -141153477 - AluSq SINE Alu -9 304 1 740 226 58 11 chr6 41261778 41261968 -141153274 - MIR SINE MIR -44 218 20 304 241 0 4 chr6 41262701 41262771 -141152471 - MIR SINE MIR -64 144 84 323 286 21 29 chr6 41262779 41262919 -141152323 - MLT1K LTR MaLR -1 587 449 472 196 135 177 chr6 41262967 41263057 -141152185 - MIR SINE MIR 0 262 170 1654 141 0 74 chr6 41263057 41263340 -141151902 - AluJb SINE Alu -50 262 1 472 196 135 177 chr6 41263340 41263509 -141151733 - MIR SINE MIR -92 170 14 384 285 146 0 chr6 41263544 41263674 -141151568 - MLT1K LTR MaLR -290 298 150 231 298 87 0 chr6 41264078 41264182 -141151060 - L2 LINE L2 -38 3234 3122 * 1078 248 51 88 chr6 41264168 41264427 -141150815 - L2 LINE L2 0 3313 3081 2337 116 0 19 chr6 41264427 41264745 -141150497 - AluSx SINE Alu 0 312 1 1078 248 51 88 chr6 41264745 41264994 -141150248 - L2 LINE L2 -232 3081 2824 442 253 205 39 chr6 41265016 41265348 -141149894 - L2 LINE L2 -2 3311 2925 208 297 18 45 chr6 41265377 41265488 -141149754 - L2 LINE L2 -570 2744 2637 725 208 78 74 chr6 41265692 41265922 -141149320 - L1ME3 LINE L1 -35 6127 5899 2168 127 3 0 chr6 41265922 41266214 -141149028 + AluSx SINE Alu 1 293 -19 2486 73 7 7 chr6 41266218 41266521 -141148721 + AluY SINE Alu 1 303 -8 725 208 78 74 chr6 41266521 41266554 -141148688 - L1ME3 LINE L1 -265 5897 5858 317 169 0 60 chr6 41266611 41266633 -141148609 - MER3 DNA MER1_type -6 203 181 2853 123 58 71 chr6 41266633 41267251 -141147991 - MER4B LTR ERV1 0 610 1 317 169 0 60 chr6 41267251 41267311 -141147931 - MER3 DNA MER1_type -28 181 126 725 161 0 8 chr6 41267311 41267429 -141147813 + AluJo SINE Alu 1 117 -195 2725 198 38 58 chr6 41267429 41267868 -141147374 - MER50 LTR ERV1 -3 731 312 2708 50 0 0 chr6 41267868 41268170 -141147072 - AluY SINE Alu -9 302 1 2725 198 38 58 chr6 41268170 41268467 -141146775 - MER50 LTR ERV1 -422 312 10 1357 136 15 0 chr6 41268471 41268669 -141146573 + AluJo SINE Alu 111 311 -1 2174 100 45 3 chr6 41268676 41268967 -141146275 + AluSx SINE Alu 1 303 -9 630 127 119 0 chr6 41268970 41269088 -141146154 - MER3 DNA MER1_type -77 132 1 569 203 0 8 chr6 41269090 41269208 -141146034 + L2 LINE L2 3191 3307 -6 674 289 78 0 chr6 41271169 41271349 -141143893 - MIR SINE MIR -11 251 58 219 69 0 0 chr6 41271377 41271406 -141143836 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 1753 182 23 0 chr6 41271955 41272302 -141142940 + L1 LINE L1 4810 5164 -982 2145 126 0 3 chr6 41272305 41272599 -141142643 + AluSx SINE Alu 1 293 -19 1873 153 10 30 chr6 41272626 41272927 -141142315 - AluJb SINE Alu -17 295 1 287 167 51 51 chr6 41273104 41273182 -141142060 - MER34 LTR ERV1 -2 540 463 262 263 92 26 chr6 41273382 41273534 -141141708 - LTR48B LTR ERV1 -354 290 129 1407 129 13 30 chr6 41273537 41273769 -141141473 + AluJb SINE Alu 85 312 0 1589 81 196 93 chr6 41273935 41274023 -141141219 - MER47A DNA MER2_type -1957 366 288 2517 78 3 0 chr6 41274023 41274332 -141140910 + AluSg SINE Alu 1 310 0 1589 81 196 93 chr6 41274332 41274343 -141140899 - MER47A DNA MER2_type -2035 288 280 1844 155 3 67 chr6 41274343 41274482 -141140760 + AluJb SINE Alu 1 147 -165 1858 142 18 0 chr6 41274482 41274608 -141140634 + AluSx SINE Alu 3 125 -187 216 0 0 0 chr6 41274608 41274632 -141140610 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1858 142 18 0 chr6 41274632 41274779 -141140463 + AluSx SINE Alu 125 281 -31 1844 155 3 67 chr6 41274779 41274793 -141140449 + AluJb SINE Alu 147 160 -152 252 0 0 0 chr6 41274793 41274821 -141140421 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1844 155 3 67 chr6 41274821 41274982 -141140260 + AluJb SINE Alu 160 296 -16 1589 81 196 93 chr6 41274982 41275213 -141140029 - MER47A DNA MER2_type -2043 280 1 369 260 36 99 chr6 41275605 41275797 -141139445 + MLT1J LTR MaLR 1 180 -331 2324 104 0 3 chr6 41275838 41276137 -141139105 + AluSq SINE Alu 3 300 -13 283 241 12 24 chr6 41276336 41276419 -141138823 + MLT1J LTR MaLR 428 509 -2 507 383 48 12 chr6 41276449 41276697 -141138545 - L3 LINE CR1 -1 1576 1320 2301 90 3 10 chr6 41276729 41277030 -141138212 + AluSx SINE Alu 1 299 -13 331 279 106 0 chr6 41277075 41277179 -141138063 + MIR SINE MIR 71 185 -77 330 26 0 0 chr6 41277355 41277394 -141137848 + (TG)n Simple_repeat Simple_repeat 1 39 0 187 262 65 56 chr6 41278124 41278231 -141137011 + MIR SINE MIR 58 165 -97 490 213 33 33 chr6 41278732 41278854 -141136388 + MIR SINE MIR 18 139 -69 363 270 127 24 chr6 41279119 41279245 -141135997 + MIR SINE MIR 60 198 -64 2307 113 3 0 chr6 41279348 41279650 -141135592 + AluSg SINE Alu 1 303 -7 360 0 0 0 chr6 41280177 41280217 -141135025 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 64 0 0 chr6 41280382 41280429 -141134813 + AT_rich Low_complexity Low_complexity 1 47 0 207 0 0 0 chr6 41281200 41281223 -141134019 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 656 167 5 4 chr6 41281223 41281418 -141133824 - AluJb SINE Alu -27 285 2 431 282 105 48 chr6 41281422 41281631 -141133611 + MIR SINE MIR 23 243 -19 701 85 0 0 chr6 41282139 41282233 -141133009 - MER4E LTR ERV1 0 766 673 5013 86 33 9 chr6 41282233 41282378 -141132864 - LTR8 LTR ERV1 0 691 551 2248 106 3 0 chr6 41282378 41282661 -141132581 - AluSq SINE Alu -28 285 2 5013 86 33 9 chr6 41282661 41283190 -141132052 - LTR8 LTR ERV1 -140 551 1 831 238 57 52 chr6 41283190 41283455 -141131787 + MER4B-int LTR ERV1 756 1025 -5733 2157 97 0 4 chr6 41283455 41283733 -141131509 - AluSg SINE Alu -32 278 2 831 238 57 52 chr6 41283733 41283854 -141131388 + MER4B-int LTR ERV1 1025 1144 -5614 198 0 0 0 chr6 41283854 41283876 -141131366 + (TG)n Simple_repeat Simple_repeat 2 23 0 2217 117 91 34 chr6 41283892 41284094 -141131148 + MER4B-int LTR ERV1 1764 1953 -4645 1674 143 0 0 chr6 41284094 41284331 -141130911 + AluSx SINE Alu 64 300 -12 2217 117 91 34 chr6 41284331 41284599 -141130643 + MER4B-int LTR ERV1 1953 2261 -4337 2002 106 4 0 chr6 41284824 41285120 -141130122 + AluSq SINE Alu 27 323 0 2164 94 37 14 chr6 41285127 41285424 -141129818 + AluSg SINE Alu 1 304 -6 2360 110 0 0 chr6 41285430 41285731 -141129511 + AluSx SINE Alu 1 301 -11 2339 97 10 0 chr6 41285819 41286129 -141129113 + AluSp SINE Alu 1 313 0 1165 119 0 0 chr6 41286130 41286324 -141128918 + AluSp SINE Alu 135 328 0 1551 132 4 44 chr6 41286444 41286695 -141128547 - AluJo SINE Alu -51 261 21 1205 114 0 6 chr6 41286729 41286895 -141128347 - AluSq SINE Alu -12 301 137 339 258 136 38 chr6 41286895 41287027 -141128215 - MIR SINE MIR -100 162 18 2415 81 3 3 chr6 41287063 41287370 -141127872 - AluY SINE Alu -2 309 3 31 26 0 0 chr6 41287431 41287469 -141127773 + AT_rich Low_complexity Low_complexity 1 38 0 205 132 19 19 chr6 41287628 41287681 -141127561 + (TA)n Simple_repeat Simple_repeat 1 53 0 197 308 77 48 chr6 41287688 41287792 -141127450 + L2 LINE L2 3204 3310 -3 408 163 0 184 chr6 41289070 41289217 -141126025 - MIR3 SINE MIR -7 201 82 1861 174 0 13 chr6 41289642 41289958 -141125284 - AluJb SINE Alu 0 312 1 696 159 71 16 chr6 41289982 41290131 -141125111 + FLAM_C SINE Alu 1 133 0 314 229 67 0 chr6 41290467 41290572 -141124670 - MIR3 SINE MIR -7 201 90 245 246 134 82 chr6 41290705 41290876 -141124366 - MIR SINE MIR -55 207 28 722 154 0 65 chr6 41291002 41291125 -141124117 + FLAM_C SINE Alu 4 118 -25 203 164 49 0 chr6 41291128 41291189 -141124053 + (TA)n Simple_repeat Simple_repeat 1 64 0 * 221 118 0 39 chr6 41291145 41291196 -141124046 + (TAAAAA)n Simple_repeat Simple_repeat 3 51 0 1045 127 0 0 chr6 41291196 41291338 -141123904 + AluJo SINE Alu 1 142 -170 435 73 24 12 chr6 41291355 41291437 -141123805 + (TA)n Simple_repeat Simple_repeat 1 83 0 822 174 28 55 chr6 41292080 41292313 -141122929 - MLT1A1 LTR MaLR -3 393 142 1959 119 0 0 chr6 41292374 41292634 -141122608 - AluJb SINE Alu -52 260 1 514 28 28 0 chr6 41292640 41292711 -141122531 - L1MA5 LINE L1 -2 6298 6226 1161 171 0 9 chr6 41292760 41292977 -141122265 - L1MA5 LINE L1 -79 6221 6007 915 126 7 13 chr6 41292981 41293132 -141122110 - MLT1A1 LTR MaLR -204 161 12 348 284 147 0 chr6 41293139 41293248 -141121994 + MIR SINE MIR 127 251 -11 973 104 7 14 chr6 41293265 41293409 -141121833 + AluYb8 SINE Alu 1 143 -175 1597 52 11 0 chr6 41293496 41293687 -141121555 + AluY SINE Alu 119 311 0 1071 233 62 34 chr6 41293703 41294055 -141121187 - MLT1I LTR MaLR 0 409 48 444 319 100 6 chr6 41294130 41294290 -141120952 - MIR SINE MIR -3 259 85 408 283 0 72 chr6 41294759 41294925 -141120317 + MIR SINE MIR 16 169 -93 863 228 16 75 chr6 41295440 41295603 -141119639 - MIR SINE MIR -4 258 114 2350 103 0 0 chr6 41295603 41295903 -141119339 + AluSx SINE Alu 1 300 -12 863 228 16 75 chr6 41295903 41295993 -141119249 - MIR SINE MIR -148 114 20 203 220 0 60 chr6 41296002 41296052 -141119190 - MER5A DNA MER1_type -28 161 115 2479 69 7 0 chr6 41296070 41296373 -141118869 - AluY SINE Alu -6 305 1 317 251 17 95 chr6 41296513 41296617 -141118625 - MER104 DNA Tc2 -1726 172 86 2383 91 3 3 chr6 41296617 41296925 -141118317 - AluSp SINE Alu -3 310 3 317 251 17 95 chr6 41296925 41296999 -141118243 - MER104 DNA Tc2 -1812 86 8 258 224 35 112 chr6 41297075 41297218 -141118024 + MIR3 SINE MIR 6 137 -71 191 306 56 0 chr6 41297708 41297780 -141117462 - L2 LINE L2 -53 3219 3144 196 223 136 109 chr6 41298193 41298377 -141116865 + L2 LINE L2 3028 3216 -56 236 272 88 18 chr6 41298521 41298635 -141116607 - MIR3 SINE MIR -72 136 15 1374 114 0 0 chr6 41298706 41298720 -141116522 + AluSg/x SINE Alu 120 133 -179 2716 45 0 0 chr6 41298720 41299028 -141116214 + AluYb8 SINE Alu 1 308 -10 1374 114 0 0 chr6 41299028 41299206 -141116036 + AluSg/x SINE Alu 132 312 0 2209 139 0 0 chr6 41299360 41299670 -141115572 + AluSx SINE Alu 1 310 -2 970 177 54 5 chr6 41299670 41299873 -141115369 + L1MB7 LINE L1 4833 5045 -1101 2232 119 10 13 chr6 41299873 41300185 -141115057 + AluY SINE Alu 1 311 0 4109 155 35 32 chr6 41300191 41301152 -141114090 + L1MB7 LINE L1 5146 6110 -74 1738 154 51 20 chr6 41301164 41301456 -141113786 - AluJb SINE Alu -11 301 1 23 0 0 0 chr6 41301464 41301487 -141113755 + AT_rich Low_complexity Low_complexity 1 23 0 217 211 105 0 chr6 41301506 41301563 -141113679 + MIR SINE MIR 194 256 -6 2044 137 0 13 chr6 41301640 41301939 -141113303 - AluSx SINE Alu -17 295 1 200 282 111 77 chr6 41301996 41302113 -141113129 - L2 LINE L2 -40 3273 3153 2285 95 0 3 chr6 41302489 41302785 -141112457 - AluSq SINE Alu -18 295 1 2584 71 0 6 chr6 41303225 41303572 -141111670 + AluY SINE Alu 1 311 0 247 183 42 70 chr6 41303758 41303829 -141111413 + MER5A DNA MER1_type 7 75 -114 * 582 196 123 43 chr6 41303769 41303829 -141111413 - MER5A DNA MER1_type -3 186 132 2242 114 0 0 chr6 41303829 41304127 -141111115 + AluSx SINE Alu 2 299 -13 582 196 123 43 chr6 41304127 41304229 -141111013 - MER5A DNA MER1_type -57 132 11 405 0 0 0 chr6 41304256 41304301 -141110941 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 88 3 0 chr6 41304303 41304587 -141110655 - AluSp SINE Alu -28 285 1 1848 151 3 49 chr6 41304668 41304992 -141110250 - AluJb SINE Alu 0 312 4 1857 106 71 21 chr6 41305298 41305580 -141109662 - AluSc SINE Alu 0 309 14 1134 82 0 0 chr6 41305581 41305716 -141109526 - AluSq/x SINE Alu -177 135 1 280 247 79 56 chr6 41306075 41306164 -141109078 + MIR3 SINE MIR 96 186 -22 768 99 0 0 chr6 41306174 41306285 -141108957 + (CA)n Simple_repeat Simple_repeat 1 111 0 1242 97 21 5 chr6 41306710 41306896 -141108346 + MER2 DNA MER2_type 22 210 -135 1118 166 0 0 chr6 41306906 41307081 -141108161 - AluSg/x SINE Alu -3 307 133 231 36 0 0 chr6 41307081 41307109 -141108133 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2158 81 41 0 chr6 41307109 41307380 -141107862 - AluSg SINE Alu -28 282 1 375 213 13 0 chr6 41307402 41307477 -141107765 + MER2 DNA MER2_type 269 344 -1 195 69 0 0 chr6 41307970 41307999 -141107243 + (TA)n Simple_repeat Simple_repeat 1 29 0 1267 206 31 35 chr6 41307999 41308154 -141107088 - AluSp SINE Alu -25 288 133 2601 71 0 0 chr6 41308154 41308463 -141106779 - AluY SINE Alu 0 311 3 1267 206 31 35 chr6 41308463 41308593 -141106649 - AluSp SINE Alu -180 133 4 277 137 39 0 chr6 41308594 41308645 -141106597 - AluJb SINE Alu -165 137 85 2339 86 3 0 chr6 41308686 41308977 -141106265 + AluSp SINE Alu 1 292 -21 252 0 0 0 chr6 41308977 41309005 -141106237 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2262 122 0 0 chr6 41309141 41309435 -141105807 + AluJb SINE Alu 1 294 -18 982 83 0 0 chr6 41309530 41309698 -141105544 + AluSg/x SINE Alu 163 330 0 771 257 155 48 chr6 41309915 41310151 -141105091 - MLT1F1 LTR MaLR -7 560 351 8041 10 0 0 chr6 41310151 41311749 -141103493 - L1PA2 LINE L1 0 6155 4560 771 257 155 48 chr6 41311749 41312004 -141103238 - MLT1F1 LTR MaLR -216 351 11 2072 128 10 13 chr6 41312049 41312353 -141102889 - AluJb SINE Alu -9 303 1 2156 139 0 0 chr6 41312899 41313201 -141102041 - AluSx SINE Alu -10 302 1 2154 90 0 84 chr6 41313336 41313659 -141101583 - AluSp SINE Alu -17 296 1 1891 162 10 0 chr6 41313906 41314196 -141101046 - AluJo SINE Alu -19 293 1 2096 93 30 4 chr6 41315055 41315361 -141099881 - AluSc SINE Alu 0 315 3 305 151 178 14 chr6 41315361 41315434 -141099808 + L1ME LINE L1 5578 5662 -459 1787 177 33 21 chr6 41318834 41319167 -141096075 + MER1B DNA MER1_type 1 337 0 2047 134 0 7 chr6 41319277 41319594 -141095648 + AluJb SINE Alu 1 315 0 193 274 55 82 chr6 41320049 41320122 -141095120 - L2 LINE L2 -48 3265 3195 453 203 173 12 chr6 41320244 41320370 -141094872 - MIR SINE MIR -63 145 41 1887 150 17 17 chr6 41320370 41320664 -141094578 - AluJb SINE Alu -18 294 1 453 203 173 12 chr6 41320664 41320675 -141094567 - MIR SINE MIR -167 41 33 2251 104 7 3 chr6 41320675 41320974 -141094268 - AluSq SINE Alu -13 300 1 1097 183 15 5 chr6 41321923 41322120 -141093122 - AluJo SINE Alu -113 199 1 2161 113 10 0 chr6 41322491 41322784 -141092458 - AluSx SINE Alu -16 296 1 1002 102 0 0 chr6 41322784 41322911 -141092331 - AluJo/FLAM SINE Alu -183 129 3 2414 88 0 0 chr6 41324358 41324663 -141090579 + AluSc SINE Alu 1 305 -4 2462 77 0 0 chr6 41325777 41326074 -141089168 - AluY SINE Alu -14 297 1 2262 97 0 3 chr6 41326266 41326555 -141088687 - AluSc SINE Alu -21 288 1 2448 57 7 0 chr6 41326812 41327109 -141088133 - AluY SINE Alu -12 299 1 232 188 78 47 chr6 41327690 41327754 -141087488 + AluJb SINE Alu 118 183 -119 2343 149 117 2 chr6 41327754 41328243 -141086999 + L1MC1 LINE L1 5789 6333 0 370 214 0 79 chr6 41328857 41328949 -141086293 + L1MB2 LINE L1 5974 6055 -116 910 143 0 0 chr6 41328949 41329082 -141086160 + FLAM_C SINE Alu 1 133 0 370 214 0 79 chr6 41329082 41329115 -141086127 + L1MB2 LINE L1 6055 6089 -82 1441 122 168 34 chr6 41329115 41329377 -141085865 + AluJb SINE Alu 1 297 -5 1336 140 97 4 chr6 41329398 41329677 -141085565 + L1MA7 LINE L1 3289 3593 -2553 7203 132 39 22 chr6 41329699 41330020 -141085222 + L1MA7 LINE L1 3880 4194 -2097 1828 157 7 20 chr6 41330020 41330314 -141084928 - AluJo SINE Alu -22 290 1 7203 132 39 22 chr6 41330314 41330626 -141084616 + L1MA7 LINE L1 4194 4499 -1792 1518 192 89 0 chr6 41330626 41330907 -141084335 - AluSg SINE Alu -4 306 1 7203 132 39 22 chr6 41330907 41331081 -141084161 + L1MA7 LINE L1 4499 4669 -1622 1859 159 3 3 chr6 41331081 41331377 -141083865 + AluJo SINE Alu 1 296 -16 7203 132 39 22 chr6 41331377 41332398 -141082844 + L1MA7 LINE L1 4669 5746 -545 826 182 88 6 chr6 41332471 41332652 -141082590 + MER46A DNA MER2_type 41 236 0 1197 132 25 33 chr6 41332652 41332894 -141082348 + L1MA7 LINE L1 5786 6025 -266 310 304 143 22 chr6 41333538 41333768 -141081474 - L2 LINE L2 -129 3184 2927 * 1058 288 156 39 chr6 41333760 41333986 -141081256 - L2 LINE L2 -544 2770 2572 2000 129 31 0 chr6 41333986 41334280 -141080962 - AluSx SINE Alu -9 303 1 1058 288 156 39 chr6 41334280 41334650 -141080592 - L2 LINE L2 -742 2572 2104 316 265 0 0 chr6 41335657 41335725 -141079517 - MER2 DNA MER2_type -1 344 277 1480 169 3 98 chr6 41335764 41336089 -141079153 + AluJo SINE Alu 1 294 -8 1024 155 43 29 chr6 41336119 41336326 -141078916 - MER2 DNA MER2_type -135 210 1 2117 152 0 0 chr6 41336759 41337055 -141078187 - AluSx SINE Alu -14 298 3 2373 89 0 3 chr6 41337826 41338130 -141077112 + AluY SINE Alu 1 303 -8 304 210 88 59 chr6 41338410 41338546 -141076696 + MER77 LTR ERV1 23 202 -403 2010 116 30 0 chr6 41338566 41338833 -141076409 - AluSq SINE Alu -38 275 1 858 272 171 50 chr6 41338833 41339355 -141075887 + MER21B LTR ERV1 130 714 -149 218 263 32 32 chr6 41339372 41339467 -141075775 - L2 LINE L2 -50 3263 3169 890 118 0 0 chr6 41340450 41340569 -141074673 - FLAM_C SINE Alu -19 124 6 256 217 76 71 chr6 41340903 41341101 -141074141 - L1MC5 LINE L1 -32 7929 7731 1354 252 164 36 chr6 41341167 41342094 -141073148 + HAL1 LINE L1 1308 2353 -154 1140 221 39 4 chr6 41342225 41342456 -141072786 + MER8 DNA MER2_type 1 239 0 227 197 225 0 chr6 41342578 41342649 -141072593 + L2 LINE L2 3186 3272 0 2306 65 0 21 chr6 41342668 41342958 -141072284 - AluY SINE Alu -15 296 13 772 124 10 72 chr6 41342988 41343179 -141072063 + MSTC LTR MaLR 1 184 -212 714 220 95 125 chr6 41343395 41343763 -141071479 - L2 LINE L2 -15 3298 2942 288 205 179 0 chr6 41343782 41343860 -141071382 - L2 LINE L2 -515 2799 2708 935 286 140 3 chr6 41343862 41344247 -141070995 + L1MA2 LINE L1 10 447 -6402 444 314 91 43 chr6 41344248 41344458 -141070784 + L1MA2 LINE L1 558 777 -6072 3515 202 88 20 chr6 41344847 41344880 -141070362 + L1MA2 LINE L1 1078 1107 -5742 252 0 0 0 chr6 41344880 41344908 -141070334 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3515 202 88 20 chr6 41344908 41345632 -141069610 + L1MA2 LINE L1 1107 1780 -5069 207 0 0 0 chr6 41345632 41345655 -141069587 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3515 202 88 20 chr6 41345655 41345689 -141069553 + L1MA2 LINE L1 1780 1810 -5039 1754 153 48 14 chr6 41345689 41345984 -141069258 + AluJo SINE Alu 1 305 -7 3515 202 88 20 chr6 41345984 41346105 -141069137 + L1MA2 LINE L1 1810 2055 -4794 993 173 24 12 chr6 41346109 41346277 -141068965 + FRAM SINE Alu 1 162 -14 27 49 0 0 chr6 41346277 41346318 -141068924 + AT_rich Low_complexity Low_complexity 1 41 0 504 175 0 10 chr6 41346323 41346426 -141068816 + L1MA2 LINE L1 2164 2265 -4584 210 37 0 0 chr6 41346427 41346454 -141068788 + (AGGGGG)n Simple_repeat Simple_repeat 3 29 0 1457 84 40 44 chr6 41346454 41346762 -141068480 + L1MA2 LINE L1 2203 2487 -4361 * 6560 105 22 14 chr6 41346761 41348146 -141067096 + L1MA2 LINE L1 5606 7006 0 4171 170 78 16 chr6 41348159 41349110 -141066132 + L1PB4 LINE L1 4547 5637 -519 2225 97 0 10 chr6 41349110 41349419 -141065823 + AluSc SINE Alu 1 306 -3 4171 170 78 16 chr6 41349419 41349974 -141065268 + L1PB4 LINE L1 5637 6156 0 403 248 29 22 chr6 41349974 41350111 -141065131 - L2 LINE L2 -613 2701 2564 2135 122 0 3 chr6 41350340 41350634 -141064608 + AluSx SINE Alu 1 293 -19 2198 83 3 41 chr6 41350776 41351090 -141064152 - AluSp SINE Alu -11 302 1 249 220 110 37 chr6 41351192 41351301 -141063941 + L1ME LINE L1 5578 5694 -427 276 148 19 0 chr6 41351534 41351588 -141063654 + L1MC5 LINE L1 7813 7867 -94 210 139 0 0 chr6 41353250 41353286 -141061956 + (TTC)n Simple_repeat Simple_repeat 2 37 0 606 160 65 35 chr6 41354242 41354411 -141060831 - L1MB2 LINE L1 -6 6165 5992 1679 199 7 7 chr6 41354539 41354846 -141060396 - AluJb SINE Alu -5 307 1 223 296 136 30 chr6 41354895 41355027 -141060215 - MIR SINE MIR -105 157 12 2471 57 0 0 chr6 41356299 41356596 -141058646 - AluSx SINE Alu -15 297 1 2389 71 0 3 chr6 41356636 41356933 -141058309 - AluY SINE Alu -15 296 1 1604 257 87 37 chr6 41357872 41358058 -141057184 + L1MC4 LINE L1 6766 6941 -1101 1711 114 149 4 chr6 41358058 41358320 -141056922 - AluSg1 SINE Alu -9 300 1 1604 257 87 37 chr6 41358320 41358965 -141056277 + L1MC4 LINE L1 6941 7638 -404 686 233 74 25 chr6 41358968 41359161 -141056081 + L1ME LINE L1 5417 5622 -540 1942 144 0 16 chr6 41359161 41359467 -141055775 + AluJb SINE Alu 1 301 -11 2123 257 74 23 chr6 41359481 41360367 -141054875 + L1MEc LINE L1 34 1023 -5373 2011 118 7 14 chr6 41360367 41360663 -141054579 + AluSg SINE Alu 1 294 -16 2123 257 74 23 chr6 41360663 41360807 -141054435 + L1MEc LINE L1 1023 1158 -5238 570 275 58 6 chr6 41360942 41361113 -141054129 + L1MC5 LINE L1 6645 6824 -1137 8563 139 82 39 chr6 41361162 41361615 -141053627 + L1M4c LINE L1 18 450 -5934 2005 134 14 3 chr6 41361615 41361906 -141053336 + AluSx SINE Alu 1 294 -18 8563 139 82 39 chr6 41361906 41362071 -141053171 + L1M4c LINE L1 450 606 -5778 1809 180 3 7 chr6 41362071 41362376 -141052866 + AluJo SINE Alu 1 304 -8 8563 139 82 39 chr6 41362376 41362596 -141052646 + L1M4c LINE L1 606 815 -5569 1567 178 36 46 chr6 41362596 41362899 -141052343 + AluJb SINE Alu 1 300 -12 8563 139 82 39 chr6 41362899 41363247 -141051995 + L1M4c LINE L1 815 1147 -5237 2375 97 10 0 chr6 41363247 41363556 -141051686 + AluSx SINE Alu 1 312 0 8563 139 82 39 chr6 41363556 41364222 -141051020 + L1M4c LINE L1 1147 1953 -4431 237 155 0 0 chr6 41364227 41364285 -141050957 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1584 213 23 11 chr6 41364285 41364721 -141050521 + L1M4c LINE L1 2447 2887 -3495 366 139 444 0 chr6 41364717 41364825 -141050417 + L1MB3 LINE L1 6016 6171 0 * 816 80 0 0 chr6 41364835 41364869 -141050373 + (TAG)n Simple_repeat Simple_repeat 1 147 0 816 80 0 0 chr6 41364869 41364982 -141050260 + (TAG)n Simple_repeat Simple_repeat 2 114 0 1453 163 96 8 chr6 41365150 41365401 -141049841 - AluJo SINE Alu -39 273 1 605 202 166 0 chr6 41365403 41365596 -141049646 + L1MC5 LINE L1 7686 7910 -51 2236 93 0 0 chr6 41365633 41365913 -141049329 - AluSg SINE Alu -30 280 1 1812 120 102 4 chr6 41365943 41366217 -141049025 + AluSg SINE Alu 1 301 -9 2336 71 3 3 chr6 41366544 41366839 -141048403 - AluY SINE Alu -16 295 1 2039 83 4 0 chr6 41367525 41367777 -141047465 + AluSx SINE Alu 1 253 -59 351 0 0 0 chr6 41368067 41368106 -141047136 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 0 0 0 chr6 41368105 41368137 -141047105 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 266 89 44 0 chr6 41368833 41368878 -141046364 + CT-rich Low_complexity Low_complexity 2 48 0 2129 104 3 3 chr6 41368889 41369186 -141046056 - AluSx SINE Alu -15 297 1 417 187 53 0 chr6 41370088 41370163 -141045079 + FRAM/FAM SINE Alu 1 78 -98 332 340 115 26 chr6 41370186 41370342 -141044900 - MIR3 SINE MIR -37 171 2 1658 95 126 70 chr6 41372174 41372308 -141042934 + AluSq SINE Alu 3 128 -185 2197 98 3 3 chr6 41372308 41372619 -141042623 + AluSx SINE Alu 1 311 0 2453 51 0 35 chr6 41372623 41372935 -141042307 + AluY SINE Alu 1 301 -10 1658 95 126 70 chr6 41372935 41373079 -141042163 + AluSq SINE Alu 130 303 -10 278 259 69 30 chr6 41373374 41373505 -141041737 + L1ME4a LINE L1 5984 6119 -2 2183 109 0 35 chr6 41374240 41374553 -141040689 + AluSq SINE Alu 1 302 -11 230 135 0 0 chr6 41374803 41374840 -141040402 - L1ME4a LINE L1 -113 6008 5972 274 172 5 0 chr6 41374884 41374945 -141040297 - L1P5 LINE L1 -575 5579 5518 1870 158 0 0 chr6 41375191 41375457 -141039785 + AluSx SINE Alu 16 281 -31 395 16 62 0 chr6 41375460 41375524 -141039718 + (CAA)n Simple_repeat Simple_repeat 2 69 0 573 248 105 35 chr6 41375743 41376001 -141039241 + Charlie8 DNA MER1_type 1522 1797 -620 1896 168 0 0 chr6 41376009 41376301 -141038941 + AluJb SINE Alu 1 292 -20 2111 112 54 0 chr6 41376553 41376847 -141038395 + AluSg SINE Alu 1 310 0 237 270 120 75 chr6 41376863 41377370 -141037872 + HAL1 LINE L1 788 1317 -1190 727 275 174 31 chr6 41377398 41377852 -141037390 + HAL1 LINE L1 1405 1923 -584 297 0 0 0 chr6 41378242 41378275 -141036967 + (TG)n Simple_repeat Simple_repeat 2 34 0 3648 161 67 99 chr6 41378275 41379201 -141036041 + MER21A LTR ERV1 29 924 -7 1272 150 40 9 chr6 41379228 41379454 -141035788 + L1MB7 LINE L1 5471 5703 -481 2171 167 84 9 chr6 41379585 41380035 -141035207 + L1MB7 LINE L1 5688 6171 -13 1676 175 11 0 chr6 41380334 41380614 -141034628 - AluJb SINE Alu -25 287 5 2797 111 22 22 chr6 41380882 41381333 -141033909 + L1PB2 LINE L1 5696 6146 -5 1156 142 0 0 chr6 41381382 41381544 -141033698 + AluSg/x SINE Alu 125 286 -24 2181 106 10 0 chr6 41381689 41381981 -141033261 + AluSx SINE Alu 3 297 -15 217 266 16 16 chr6 41382036 41382100 -141033142 + L2 LINE L2 2782 2845 -469 383 213 244 63 chr6 41382109 41382330 -141032912 + L2 LINE L2 3002 3262 -51 2265 104 3 22 chr6 41382526 41382844 -141032398 + AluSx SINE Alu 1 312 0 462 255 74 46 chr6 41382919 41383135 -141032107 + MIR SINE MIR 11 232 -30 426 269 21 28 chr6 41383187 41383328 -141031914 - L2 LINE L2 -1 3312 3173 786 169 8 8 chr6 41383680 41383810 -141031432 + FLAM_A SINE Alu 1 130 -3 1591 168 34 81 chr6 41383968 41384378 -141030864 + MLT1B LTR MaLR 1 621 -5 1518 154 44 63 chr6 41384933 41385251 -141029991 + AluJo SINE Alu 1 312 0 877 135 0 23 chr6 41385803 41385936 -141029306 + FLAM_C SINE Alu 1 130 -3 2226 106 7 0 chr6 41386040 41386332 -141028910 + AluSx SINE Alu 5 298 -14 1405 221 12 0 chr6 41386652 41386910 -141028332 - AluJb SINE Alu -51 261 1 2371 95 6 19 chr6 41387325 41387642 -141027600 + AluSq SINE Alu 1 313 0 1554 171 38 51 chr6 41387663 41387979 -141027263 + AluJo SINE Alu 1 312 0 449 261 80 0 chr6 41387979 41388117 -141027125 + Charlie8 DNA MER1_type 82 230 -2187 946 246 60 47 chr6 41388451 41389007 -141026235 + L1MC5 LINE L1 6347 6925 -883 * 1395 192 52 60 chr6 41388974 41389031 -141026211 + L1MB8 LINE L1 5801 5857 -321 2089 132 0 0 chr6 41389031 41389319 -141025923 - AluSx SINE Alu -12 300 13 1395 192 52 60 chr6 41389319 41389642 -141025600 + L1MB8 LINE L1 5857 6178 0 844 148 96 57 chr6 41389740 41389970 -141025272 + L1MC5 LINE L1 7071 7309 -652 314 228 239 20 chr6 41389990 41390230 -141025012 + L1MC5 LINE L1 7493 7793 -168 2341 117 3 0 chr6 41390230 41390539 -141024703 + AluSq SINE Alu 1 310 -3 314 228 239 20 chr6 41390539 41390553 -141024689 + L1MC5 LINE L1 7793 7803 -158 1402 141 84 68 chr6 41390587 41390956 -141024286 + THE1C LTR MaLR 1 375 0 8484 122 125 34 chr6 41390956 41392404 -141022838 + THE1C-int LTR MaLR 1 1580 0 1708 117 74 80 chr6 41392404 41392781 -141022461 + THE1C LTR MaLR 1 375 0 2384 96 3 0 chr6 41392788 41393089 -141022153 - AluSp SINE Alu -11 302 1 8030 100 34 0 chr6 41393093 41394239 -141021003 + Tigger1 DNA MER2_type 653 1837 -581 954 83 0 0 chr6 41394239 41394359 -141020883 + FLAM_C SINE Alu 1 120 -23 28 0 0 0 chr6 41394370 41394398 -141020844 + AT_rich Low_complexity Low_complexity 1 28 0 812 188 0 0 chr6 41394403 41394536 -141020706 - FLAM_A SINE Alu 0 133 1 3259 129 61 48 chr6 41394536 41394858 -141020384 + Tigger1 DNA MER2_type 1823 2158 -260 1476 179 3 70 chr6 41394858 41395170 -141020072 + AluJo SINE Alu 1 291 -21 3259 129 61 48 chr6 41395170 41395435 -141019807 + Tigger1 DNA MER2_type 2158 2418 0 1764 167 42 3 chr6 41395590 41395878 -141019364 - AluJo SINE Alu -13 299 1 696 146 0 0 chr6 41396210 41396320 -141018922 + AluSg/x SINE Alu 190 299 -10 2354 109 3 0 chr6 41396323 41396626 -141018616 + AluSx SINE Alu 1 304 -8 2458 93 0 3 chr6 41396770 41397083 -141018159 - AluSp SINE Alu -1 312 1 668 242 73 50 chr6 41397289 41397591 -141017651 + L2 LINE L2 3003 3311 -2 2076 127 14 0 chr6 41397611 41397902 -141017340 - AluSq SINE Alu -18 295 1 2309 97 0 13 chr6 41397928 41398237 -141017005 + AluY SINE Alu 1 305 -6 311 234 37 28 chr6 41398294 41398401 -141016841 + L1ME LINE L1 5636 5743 -378 2349 93 0 0 chr6 41398497 41398799 -141016443 + AluY SINE Alu 1 302 -9 414 0 0 0 chr6 41398804 41398850 -141016392 + (CA)n Simple_repeat Simple_repeat 2 47 0 28 0 0 0 chr6 41398851 41398879 -141016363 + AT_rich Low_complexity Low_complexity 1 28 0 987 164 0 7 chr6 41398881 41399033 -141016209 + AluSq SINE Alu 134 284 -29 210 105 0 0 chr6 41399033 41399071 -141016171 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2073 112 7 11 chr6 41399583 41399892 -141015350 + AluSx SINE Alu 1 308 0 256 240 190 66 chr6 41400147 41400268 -141014974 + MIR SINE MIR 15 150 -112 274 274 36 0 chr6 41400683 41400767 -141014475 - MIR SINE MIR -155 107 21 246 136 0 0 chr6 41400983 41401027 -141014215 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 2035 125 17 17 chr6 41401030 41401327 -141013915 + AluSx SINE Alu 6 302 -10 22 109 0 0 chr6 41403410 41403502 -141011740 + GC_rich Low_complexity Low_complexity 1 92 0 201 208 28 56 chr6 41403910 41403982 -141011260 + C-rich Low_complexity Low_complexity 3 72 0 180 107 0 0 chr6 41404223 41404251 -141010991 + MIR SINE MIR 116 143 -119 1108 139 115 0 chr6 41404741 41404949 -141010293 - MER58B DNA MER1_type -3 338 107 300 25 0 0 chr6 41404961 41405001 -141010241 - LTR46 LTR ERV1 0 460 421 793 196 12 12 chr6 41405001 41405164 -141010078 - AluJb SINE Alu -30 282 120 332 289 41 0 chr6 41405848 41405969 -141009273 + L2 LINE L2 3188 3313 0 2381 83 3 7 chr6 41405974 41406276 -141008966 + AluSc SINE Alu 1 301 -8 506 281 81 11 chr6 41406374 41406559 -141008683 - L3 LINE CR1 -1191 386 189 1271 197 44 12 chr6 41406769 41407018 -141008224 - AluJb SINE Alu -15 297 41 726 189 8 0 chr6 41407066 41407198 -141008044 + FLAM_C SINE Alu 1 133 0 869 179 106 0 chr6 41407766 41407945 -141007297 - LTR33 LTR ERVL -20 501 304 2478 67 0 44 chr6 41407969 41408284 -141006958 + AluSq SINE Alu 1 301 -12 1774 164 32 93 chr6 41408284 41408692 -141006550 - MLT1B LTR MaLR -7 383 1 982 163 109 10 chr6 41408740 41408942 -141006300 - LTR33 LTR ERVL -299 222 1 2404 66 31 0 chr6 41409967 41410255 -141004987 - AluY SINE Alu -14 297 1 2031 131 0 14 chr6 41410643 41410933 -141004309 + AluSx SINE Alu 1 286 -26 2261 106 0 0 chr6 41411292 41411593 -141003649 + AluSg SINE Alu 1 301 -9 357 234 190 57 chr6 41411617 41411775 -141003467 - MIR SINE MIR -81 181 3 194 348 4 85 chr6 41411782 41412018 -141003224 - L2 LINE L2 -115 3157 2941 1667 159 10 52 chr6 41412045 41412353 -141002889 + AluJo SINE Alu 1 295 -17 200 263 0 0 chr6 41412353 41412391 -141002851 + (CA)n Simple_repeat Simple_repeat 1 38 0 1311 181 4 4 chr6 41412576 41412813 -141002429 + L1M4 LINE L1 3952 4188 -1958 2413 193 156 30 chr6 41412814 41413575 -141001667 - Charlie2 DNA MER1_type -151 2711 1855 291 236 57 28 chr6 41413579 41413685 -141001557 - Charlie2 DNA MER1_type -2460 322 214 364 213 25 106 chr6 41413688 41413848 -141001394 + L2 LINE L2 3160 3306 -7 4594 119 115 134 chr6 41413891 41415292 -140999950 + pTR5 LTR ERV1 73 2400 -38 185 257 171 29 chr6 41415419 41415524 -140999718 + MIR SINE MIR 31 150 -112 192 237 0 0 chr6 41415795 41415833 -140999409 + MIR SINE MIR 114 151 -111 1155 73 0 0 chr6 41415833 41415969 -140999273 + AluSq/x SINE Alu 1 136 -177 2246 114 3 0 chr6 41415969 41416267 -140998975 + AluSx SINE Alu 1 299 -13 304 248 53 18 chr6 41416268 41416381 -140998861 + MIR SINE MIR 143 259 -3 183 246 0 0 chr6 41417640 41417697 -140997545 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 1765 168 6 32 chr6 41417922 41418238 -140997004 - AluSx SINE Alu -4 308 1 1004 258 84 61 chr6 41418243 41418571 -140996671 - L1MCc LINE L1 -4810 2312 1993 2418 95 0 0 chr6 41418571 41418867 -140996375 + AluSg SINE Alu 1 296 -14 1004 258 84 61 chr6 41418867 41419520 -140995722 - L1MCc LINE L1 -5129 1993 1094 2188 125 27 35 chr6 41419750 41420117 -140995125 + THE1B LTR MaLR 1 364 0 827 158 0 15 chr6 41420269 41420402 -140994840 - FLAM_C SINE Alu -1 132 2 783 204 72 95 chr6 41420507 41420616 -140994626 - L1MC5 LINE L1 -397 7564 7454 841 159 0 0 chr6 41420616 41420748 -140994494 - FLAM_A SINE Alu -1 132 1 783 204 72 95 chr6 41420748 41420942 -140994300 - L1MC5 LINE L1 -507 7454 7268 394 229 0 0 chr6 41420946 41421016 -140994226 - MER2 DNA MER2_type -1 344 275 873 129 0 0 chr6 41421023 41421139 -140994103 + FLAM_C SINE Alu 9 124 -19 21 0 0 0 chr6 41421165 41421186 -140994056 + AT_rich Low_complexity Low_complexity 1 21 0 616 156 92 0 chr6 41421188 41421297 -140993945 + MLT1H LTR MaLR 431 549 0 197 303 15 15 chr6 41421353 41421419 -140993823 + L3 LINE CR1 1510 1575 -2 1655 106 76 53 chr6 41422082 41422385 -140992857 + THE1C LTR MaLR 1 310 -65 2717 85 6 0 chr6 41422386 41422739 -140992503 + THE1A LTR MaLR 1 355 0 12140 83 12 0 chr6 41422739 41424300 -140990942 + THE1A-int LTR MaLR 1 1580 0 2718 85 34 26 chr6 41424300 41424722 -140990520 + THE1A LTR MaLR 1 355 0 340 217 36 24 chr6 41425306 41425389 -140989853 + L2 LINE L2 3225 3308 -5 1608 181 33 20 chr6 41427196 41427316 -140987926 + AluJb SINE Alu 2 119 -193 230 73 24 0 chr6 41427316 41427357 -140987885 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1608 181 33 20 chr6 41427357 41427535 -140987707 + AluJb SINE Alu 119 304 -8 37 32 0 16 chr6 41427653 41427670 -140987572 + AT_rich Low_complexity Low_complexity 1 17 -44 2188 129 0 0 chr6 41427670 41427956 -140987286 - AluSx SINE Alu -26 286 1 37 32 0 16 chr6 41427956 41428000 -140987242 + AT_rich Low_complexity Low_complexity 17 61 0 257 265 128 51 chr6 41428524 41428641 -140986601 + L2 LINE L2 3122 3247 -25 1076 301 51 13 chr6 41428667 41429038 -140986204 + L2 LINE L2 1955 2348 -966 1986 129 11 0 chr6 41429038 41429340 -140985902 - AluSx SINE Alu 0 305 1 1076 301 51 13 chr6 41429340 41429415 -140985827 + L2 LINE L2 2348 2419 -895 1608 203 7 7 chr6 41429505 41429796 -140985446 - AluJo SINE Alu -21 291 1 2063 137 0 13 chr6 41429831 41430137 -140985105 - AluSx SINE Alu -10 302 1 398 343 102 7 chr6 41430146 41430449 -140984793 + L1M4 LINE L1 4036 4367 -1779 1986 166 0 0 chr6 41430455 41430757 -140984485 + AluJb SINE Alu 1 302 -10 412 287 34 49 chr6 41430789 41431113 -140984129 + L1M4 LINE L1 4456 4774 -1372 2257 117 0 0 chr6 41431113 41431420 -140983822 + AluSx SINE Alu 1 307 -5 1343 164 71 61 chr6 41431595 41431906 -140983336 + MLT1A1 LTR MaLR 52 365 0 2234 115 7 0 chr6 41431960 41432256 -140982986 + AluSg SINE Alu 3 300 -10 21 0 0 0 chr6 41432463 41432484 -140982758 + AT_rich Low_complexity Low_complexity 1 21 0 2183 63 49 11 chr6 41432616 41432903 -140982339 - AluSc SINE Alu -11 298 1 2199 111 10 0 chr6 41433102 41433391 -140981851 - AluSg SINE Alu -18 292 1 2134 137 7 0 chr6 41434376 41434682 -140980560 - AluSg SINE Alu -2 308 1 2431 95 0 0 chr6 41435540 41435844 -140979398 + AluSg SINE Alu 1 304 -6 270 303 22 11 chr6 41436255 41436344 -140978898 + MIR SINE MIR 158 247 -15 338 324 94 0 chr6 41436480 41436650 -140978592 - MIR3 SINE MIR -7 201 16 2288 121 0 0 chr6 41437469 41437774 -140977468 + AluSx SINE Alu 1 305 -7 1513 158 7 86 chr6 41438765 41439069 -140976173 + AluJb SINE Alu 1 280 -32 980 177 0 0 chr6 41439099 41439257 -140975985 + AluJb SINE Alu 148 305 -7 2276 125 3 0 chr6 41439444 41439749 -140975493 + AluSp SINE Alu 1 306 -7 2008 134 7 0 chr6 41439749 41440039 -140975203 + AluSp SINE Alu 1 293 -20 22 0 0 0 chr6 41440175 41440197 -140975045 + AT_rich Low_complexity Low_complexity 1 22 0 2283 94 7 3 chr6 41440413 41440712 -140974530 - AluSq SINE Alu -13 300 1 1362 99 16 6 chr6 41441024 41441206 -140974036 + AluSx SINE Alu 1 184 -128 852 113 9 0 chr6 41441314 41441429 -140973813 + AluSq/x SINE Alu 1 116 -197 2087 101 77 0 chr6 41442704 41442991 -140972251 - AluSg SINE Alu -1 309 1 1907 153 3 25 chr6 41443180 41443494 -140971748 + AluSx SINE Alu 1 307 -5 232 227 107 27 chr6 41444124 41444199 -140971043 + MIR SINE MIR 106 186 -76 201 260 135 19 chr6 41444469 41444573 -140970669 + L2 LINE L2 1549 1664 -1650 2437 88 0 0 chr6 41444752 41445049 -140970193 + AluSg SINE Alu 1 297 -13 929 148 47 12 chr6 41445606 41445775 -140969467 - FRAM SINE Alu -8 168 1 700 152 8 53 chr6 41445817 41445937 -140969305 - REP3 LTR ERV -10 552 437 1509 214 80 35 chr6 41445937 41446422 -140968820 + MER84 LTR ERV1 1 507 0 700 152 8 53 chr6 41446422 41446433 -140968809 - REP3 LTR ERV -125 437 427 370 255 61 0 chr6 41446431 41446529 -140968713 + REP3 LTR ERV 352 455 -107 * 1872 161 7 3 chr6 41446733 41447031 -140968211 + AluJb SINE Alu 1 299 -13 2003 160 0 0 chr6 41447171 41447465 -140967777 + AluSx SINE Alu 1 294 -18 2154 133 0 3 chr6 41447491 41447792 -140967450 + AluSx SINE Alu 2 301 -11 305 193 200 30 chr6 41447958 41448093 -140967149 + L1ME4a LINE L1 5963 6120 -1 2586 67 0 9 chr6 41448203 41448518 -140966724 + AluSp SINE Alu 1 312 -1 2165 94 0 37 chr6 41448529 41448826 -140966416 + AluSx SINE Alu 15 300 -12 1904 124 29 0 chr6 41450657 41450931 -140964311 - AluSx SINE Alu -7 305 24 2059 119 0 0 chr6 41450955 41451232 -140964010 - AluSx SINE Alu -16 296 20 492 165 0 0 chr6 41451370 41451461 -140963781 + (TA)n Simple_repeat Simple_repeat 1 91 0 225 313 24 12 chr6 41451891 41451974 -140963268 + L2 LINE L2 3229 3312 -1 2370 104 0 0 chr6 41452124 41452432 -140962810 + AluSc SINE Alu 1 308 -1 2181 88 7 7 chr6 41453550 41453864 -140961378 + AluSq SINE Alu 1 314 0 400 233 92 37 chr6 41454386 41454549 -140960693 - MIR SINE MIR -70 192 21 695 155 95 0 chr6 41455099 41455215 -140960027 + FLAM_C SINE Alu 7 133 -10 1646 92 18 4 chr6 41456246 41456473 -140958769 - MER30 DNA MER1_type 0 230 1 2327 113 0 0 chr6 41456842 41457152 -140958090 + AluSx SINE Alu 1 310 -2 1961 142 0 65 chr6 41457540 41457864 -140957378 - AluSx SINE Alu -9 303 1 2331 105 3 0 chr6 41458438 41458742 -140956500 + AluSp SINE Alu 1 305 -8 2310 102 7 0 chr6 41458950 41459244 -140955998 + AluSq SINE Alu 1 296 -17 2278 68 34 14 chr6 41459357 41459650 -140955592 - AluY SINE Alu -12 299 1 21 0 0 0 chr6 41460249 41460270 -140954972 + AT_rich Low_complexity Low_complexity 1 21 0 803 181 73 136 chr6 41460493 41460609 -140954633 + L1M4 LINE L1 3556 3678 -2468 2332 101 0 3 chr6 41460609 41460907 -140954335 + AluSx SINE Alu 1 297 -15 803 181 73 136 chr6 41460907 41461144 -140954098 + L1M4 LINE L1 3678 3887 -2259 1761 169 12 35 chr6 41461639 41461958 -140953284 - AluJb SINE Alu 0 312 1 24 32 0 0 chr6 41461966 41461997 -140953245 + AT_rich Low_complexity Low_complexity 1 31 0 2478 64 3 0 chr6 41462002 41462298 -140952944 + AluY SINE Alu 1 297 -14 2167 140 7 0 chr6 41462772 41463079 -140952163 - AluSx SINE Alu -3 309 1 334 317 65 25 chr6 41463125 41463324 -140951918 + MIR SINE MIR 3 209 -53 2254 89 10 0 chr6 41463539 41463832 -140951410 + AluSx SINE Alu 3 298 -14 1728 169 0 37 chr6 41464165 41464491 -140950751 + AluJo SINE Alu 1 315 0 21 57 0 0 chr6 41465301 41465336 -140949906 + AT_rich Low_complexity Low_complexity 1 35 0 2203 119 0 10 chr6 41466351 41466661 -140948581 - AluSq SINE Alu -6 307 1 2137 141 0 6 chr6 41467117 41467430 -140947812 - AluSx SINE Alu -1 311 1 3886 119 23 16 chr6 41467559 41468165 -140947077 + MER4B LTR ERV1 1 610 0 2511 87 0 0 chr6 41468219 41468528 -140946714 + AluSg SINE Alu 1 309 -1 2767 117 10 48 chr6 41468695 41468831 -140946411 - L1MA8 LINE L1 0 6291 6151 2285 115 3 0 chr6 41468831 41469135 -140946107 - AluSp SINE Alu -3 310 6 2767 117 10 48 chr6 41469135 41469494 -140945748 - L1MA8 LINE L1 -140 6151 5815 29 0 0 0 chr6 41469494 41469523 -140945719 + AT_rich Low_complexity Low_complexity 1 29 0 1095 114 8 185 chr6 41469547 41469835 -140945407 - L1MA8 LINE L1 -385 5789 5585 2254 94 10 3 chr6 41470180 41470477 -140944765 - AluY SINE Alu -12 299 1 248 238 163 12 chr6 41470533 41470613 -140944629 - MLT1J LTR MaLR -315 196 105 2393 94 3 0 chr6 41470710 41471017 -140944225 - AluSx SINE Alu -4 308 1 2160 138 0 3 chr6 41471158 41471470 -140943772 + AluSx SINE Alu 1 311 -1 181 230 68 68 chr6 41471494 41471568 -140943674 + MIR SINE MIR 56 129 -133 1149 201 40 102 chr6 41471583 41471648 -140943594 - L1ME2 LINE L1 -1 6163 6096 2454 84 0 0 chr6 41471648 41471946 -140943296 - AluY SINE Alu -13 298 1 1149 201 40 102 chr6 41471946 41472283 -140942959 - L1ME2 LINE L1 -68 6096 5786 193 29 29 29 chr6 41472692 41472727 -140942515 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2285 110 3 0 chr6 41472734 41473043 -140942199 - AluSx SINE Alu -2 310 1 24 0 0 0 chr6 41473311 41473335 -140941907 + AT_rich Low_complexity Low_complexity 1 24 0 709 146 142 78 chr6 41473785 41473925 -140941317 + L1MA9 LINE L1 6060 6220 -92 2240 109 7 10 chr6 41473925 41474228 -140941014 + AluSx SINE Alu 1 302 -10 709 146 142 78 chr6 41474228 41474306 -140940936 + L1MA9 LINE L1 6220 6292 -20 1547 166 30 53 chr6 41475810 41476112 -140939130 - AluJo SINE Alu -17 295 1 24 53 0 0 chr6 41476366 41476404 -140938838 + AT_rich Low_complexity Low_complexity 1 38 0 852 168 0 29 chr6 41476550 41476687 -140938555 + FLAM_C SINE Alu 1 133 0 2688 48 0 0 chr6 41476909 41477220 -140938022 - AluY SINE Alu 0 311 1 2246 110 0 3 chr6 41477384 41477683 -140937559 - AluSx SINE Alu -14 298 1 554 232 111 53 chr6 41477730 41477920 -140937322 + MIR SINE MIR 14 214 -48 430 275 42 28 chr6 41478012 41478154 -140937088 - MER117 DNA MER1_type -52 145 2 500 266 70 8 chr6 41478316 41478444 -140936798 + MIR SINE MIR 21 156 -106 1036 141 0 41 chr6 41478447 41478617 -140936625 - AluJo SINE Alu -149 163 1 657 274 48 24 chr6 41478823 41479031 -140936211 - MIR SINE MIR -13 249 37 189 74 0 0 chr6 41479341 41479368 -140935874 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1090 134 0 0 chr6 41479371 41479520 -140935722 - AluJb SINE Alu -30 282 134 2211 121 0 0 chr6 41479559 41479857 -140935385 + AluSq SINE Alu 1 298 -15 2079 136 0 69 chr6 41479905 41480266 -140934976 + MER1B DNA MER1_type 2 337 0 2339 104 3 0 chr6 41481082 41481390 -140933852 + AluSp SINE Alu 3 311 -2 2326 103 6 3 chr6 41481689 41482000 -140933242 - AluSq SINE Alu -1 312 1 698 186 124 31 chr6 41483619 41483845 -140931397 - L1MC5 LINE L1 -45 7916 7670 862 201 225 99 chr6 41483890 41483934 -140931308 + MLT1F1 LTR MaLR 1 38 -529 2542 60 0 0 chr6 41483934 41484234 -140931008 - AluY SINE Alu -11 300 1 862 201 225 99 chr6 41484234 41484414 -140930828 + MLT1F1 LTR MaLR 38 194 -373 918 239 17 6 chr6 41484414 41484590 -140930652 + MER45A DNA AcHobo 1 178 0 862 201 225 99 chr6 41484590 41484737 -140930505 + MLT1F1 LTR MaLR 194 445 -122 435 174 65 11 chr6 41484811 41484903 -140930339 - L1MC5 LINE L1 -387 7574 7478 406 174 0 0 chr6 41484911 41484980 -140930262 - MLT1K LTR MaLR -9 579 511 1093 234 102 35 chr6 41485100 41485518 -140929724 - L1ME LINE L1 -431 5739 5350 2053 134 10 0 chr6 41485518 41485810 -140929432 - AluSx SINE Alu -17 295 1 1093 234 102 35 chr6 41485810 41486256 -140928986 - L1ME LINE L1 -820 5350 4734 2608 71 0 0 chr6 41486456 41486767 -140928475 - AluY SINE Alu 0 311 1 1793 182 7 7 chr6 41486870 41487177 -140928065 - AluJb SINE Alu 0 312 6 303 237 104 7 chr6 41487305 41487440 -140927802 - L1ME LINE L1 -1886 4260 4113 1748 120 32 52 chr6 41487464 41487772 -140927470 - AluJb SINE Alu -10 302 1 2829 214 60 23 chr6 41487976 41488723 -140926519 - L1MC4a LINE L1 -5 7803 7029 2031 145 0 0 chr6 41488934 41489216 -140926026 - AluSx SINE Alu -20 292 11 298 297 0 0 chr6 41489237 41489301 -140925941 - L2 LINE L2 -5 3267 3204 3736 219 88 11 chr6 41489610 41490644 -140924598 + L1ME1 LINE L1 3806 4919 -1227 2511 67 0 0 chr6 41490645 41490945 -140924297 + AluY SINE Alu 1 300 -11 932 156 6 50 chr6 41490955 41491102 -140924140 + FRAM SINE Alu 1 140 -172 261 0 0 0 chr6 41491102 41491131 -140924111 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 932 156 6 50 chr6 41491131 41491163 -140924079 + FRAM SINE Alu 140 172 -4 889 171 18 6 chr6 41491173 41491343 -140923899 + L1ME1 LINE L1 5319 5490 -869 5111 174 32 19 chr6 41491349 41491877 -140923365 + L1MD1 LINE L1 5149 5669 -573 2068 108 7 0 chr6 41491877 41492192 -140923050 + AluSx SINE Alu 1 317 0 5111 174 32 19 chr6 41492192 41492743 -140922499 + L1MD1 LINE L1 5669 6242 0 2808 209 45 23 chr6 41492737 41493340 -140921902 + L1ME1 LINE L1 5471 6090 -76 * 2375 105 0 0 chr6 41493340 41493645 -140921597 - AluSx SINE Alu -7 305 1 2808 209 45 23 chr6 41493645 41493683 -140921559 + L1ME1 LINE L1 6090 6126 -40 1963 157 0 3 chr6 41494417 41494711 -140920531 - AluJb SINE Alu -15 297 5 993 148 15 69 chr6 41495301 41495504 -140919738 - MER20 DNA MER1_type -24 195 4 810 181 176 42 chr6 41495945 41496006 -140919236 + MER20 DNA MER1_type 1 52 -167 2177 89 57 0 chr6 41496006 41496287 -140918955 - AluSx SINE Alu -15 297 1 810 181 176 42 chr6 41496287 41496418 -140918824 + MER20 DNA MER1_type 52 219 0 315 226 139 35 chr6 41496687 41496802 -140918440 - MIR3 SINE MIR -76 132 6 2136 98 47 0 chr6 41497406 41497702 -140917540 + AluSg SINE Alu 1 310 0 843 269 42 46 chr6 41497707 41497913 -140917329 - MIR SINE MIR -23 239 33 2334 92 0 16 chr6 41497913 41498217 -140917025 - AluSg SINE Alu -11 299 1 843 269 42 46 chr6 41498217 41498248 -140916994 - MIR SINE MIR -229 33 3 2364 92 0 3 chr6 41498794 41499099 -140916143 - AluSc SINE Alu -5 304 1 1330 171 60 4 chr6 41499132 41499383 -140915859 + Charlie4 DNA MER1_type 17 281 -1680 468 128 64 28 chr6 41499383 41499492 -140915750 + Charlie4 DNA MER1_type 1778 1890 -71 4733 166 35 70 chr6 41499493 41499696 -140915546 + L1MB4 LINE L1 4870 5079 -1101 2026 147 10 0 chr6 41499696 41500002 -140915240 + AluSx SINE Alu 1 309 -3 4733 166 35 70 chr6 41500002 41500159 -140915083 + L1MB4 LINE L1 5079 5240 -940 2136 111 0 10 chr6 41500159 41500476 -140914766 + AluSq SINE Alu 4 313 0 4733 166 35 70 chr6 41500476 41501494 -140913748 + L1MB4 LINE L1 5240 6180 0 362 207 35 11 chr6 41501494 41501581 -140913661 + Charlie4 DNA MER1_type 1873 1961 0 2093 134 3 0 chr6 41501735 41502027 -140913215 - AluSx SINE Alu -14 298 6 210 290 86 25 chr6 41502676 41502807 -140912435 - MIR3 SINE MIR -111 151 13 539 218 156 53 chr6 41502943 41503168 -140912074 + L2 LINE L2 3063 3310 -3 1432 145 4 13 chr6 41503213 41503440 -140911802 + AluJb SINE Alu 73 297 -15 371 348 61 6 chr6 41503753 41503917 -140911325 - MIR SINE MIR -8 254 82 585 225 25 25 chr6 41504402 41504562 -140910680 - Charlie8 DNA MER1_type -2181 236 77 544 97 0 0 chr6 41504592 41504664 -140910578 - Alu SINE Alu -14 295 224 900 63 0 0 chr6 41504664 41504775 -140910467 - AluY SINE Alu -200 111 1 2193 108 3 0 chr6 41504777 41505073 -140910169 - AluSx SINE Alu -15 297 1 1090 135 109 42 chr6 41505157 41505350 -140909892 - MER3 DNA MER1_type 0 209 4 353 99 113 42 chr6 41505685 41505756 -140909486 + MER5A DNA MER1_type 78 153 -36 300 166 181 45 chr6 41505753 41505862 -140909380 - MER5A DNA MER1_type -56 133 2 * 417 39 0 0 chr6 41505969 41506020 -140909222 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 2294 98 7 0 chr6 41506078 41506375 -140908867 + AluSx SINE Alu 6 304 -8 222 315 90 0 chr6 41507166 41507277 -140907965 - L2 LINE L2 0 3272 3152 188 263 88 0 chr6 41507619 41507676 -140907566 - L2 LINE L2 -20 3293 3232 412 248 18 28 chr6 41508056 41508165 -140907077 + L2 LINE L2 3203 3310 -3 308 310 129 0 chr6 41508165 41508281 -140906961 + L2 LINE L2 3142 3272 0 281 296 148 0 chr6 41508701 41508789 -140906453 - L2 LINE L2 -4 3309 3209 186 238 0 24 chr6 41509059 41509101 -140906141 - MIR SINE MIR -80 128 88 297 313 68 51 chr6 41509223 41509399 -140905843 + MER5A DNA MER1_type 2 180 -9 2308 87 0 10 chr6 41509427 41509736 -140905506 - AluSc SINE Alu -3 306 1 2409 43 7 0 chr6 41509865 41510168 -140905074 - AluSp SINE Alu 0 305 1 189 0 0 0 chr6 41511598 41511619 -140903623 + (T)n Simple_repeat Simple_repeat 1 21 0 217 155 36 24 chr6 41512687 41512771 -140902471 + (TA)n Simple_repeat Simple_repeat 2 86 0 2405 70 0 0 chr6 41513212 41513511 -140901731 + AluY SINE Alu 1 299 -12 604 249 70 108 chr6 41513723 41513825 -140901417 - MARNA DNA Mariner -19 567 463 2165 108 3 0 chr6 41513825 41514120 -140901122 - AluSx SINE Alu -16 296 1 604 249 70 108 chr6 41514120 41514210 -140901032 - MARNA DNA Mariner -123 463 371 2049 146 3 0 chr6 41514210 41514511 -140900731 - AluSx SINE Alu -10 302 1 604 249 70 108 chr6 41514511 41514734 -140900508 - MARNA DNA Mariner -215 371 167 834 186 0 0 chr6 41514748 41514888 -140900354 - FLAM_C SINE Alu -3 140 1 483 246 41 41 chr6 41515437 41515559 -140899683 - L2 LINE L2 -5 3267 3146 21 36 0 0 chr6 41515779 41515807 -140899435 + AT_rich Low_complexity Low_complexity 1 28 0 2248 116 0 0 chr6 41516127 41516421 -140898821 - AluSg SINE Alu -16 294 1 191 233 81 70 chr6 41516690 41516776 -140898466 - MIR SINE MIR -50 212 126 5179 120 20 69 chr6 41517541 41517693 -140897549 + Tigger1 DNA MER2_type 26 184 -2234 2444 94 0 0 chr6 41517693 41518002 -140897240 - AluSg SINE Alu 0 310 2 5179 120 20 69 chr6 41518002 41518748 -140896494 + Tigger1 DNA MER2_type 184 880 -1538 1884 123 0 96 chr6 41518748 41519080 -140896162 + AluSx SINE Alu 1 300 -12 3886 137 3 64 chr6 41519082 41519540 -140895702 + Tigger1 DNA MER2_type 1789 2273 -145 189 0 0 0 chr6 41519540 41519561 -140895681 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2084 121 0 3 chr6 41519566 41519848 -140895394 - AluSx SINE Alu -31 281 1 3886 137 3 64 chr6 41519848 41520054 -140895188 + Tigger1 DNA MER2_type 2277 2418 0 930 259 44 57 chr6 41520414 41520506 -140894736 - L2 LINE L2 -24 3289 3197 1439 138 25 105 chr6 41520506 41520831 -140894411 + AluJb SINE Alu 1 299 -13 930 259 44 57 chr6 41520831 41521349 -140893893 - L2 LINE L2 -116 3197 2687 180 77 0 0 chr6 41522277 41522303 -140892939 + (TG)n Simple_repeat Simple_repeat 2 27 0 2262 99 31 0 chr6 41522529 41522823 -140892419 + AluSx SINE Alu 1 303 -9 402 153 0 0 chr6 41522883 41522942 -140892300 - Tigger4(Zombi) DNA MER2_type -2672 59 1 1105 170 71 42 chr6 41522949 41523161 -140892081 - MER20 DNA MER1_type 0 219 2 322 315 165 0 chr6 41524925 41525052 -140890190 - MER5B DNA MER1_type -2 176 29 1704 158 3 56 chr6 41525283 41525606 -140889636 - AluJo SINE Alu -5 307 2 1713 158 0 40 chr6 41525651 41525948 -140889294 + AluJb SINE Alu 14 298 -14 2462 93 3 0 chr6 41526604 41526916 -140888326 - AluSp SINE Alu 0 313 1 811 143 8 0 chr6 41527400 41527526 -140887716 + FLAM_C SINE Alu 2 128 -5 1687 183 20 7 chr6 41527656 41527951 -140887291 + AluJb SINE Alu 1 299 -13 2518 68 0 3 chr6 41528333 41528644 -140886598 + AluY SINE Alu 1 310 -1 480 274 123 41 chr6 41529244 41529463 -140885779 - MIR SINE MIR -18 244 8 183 300 38 25 chr6 41529789 41529869 -140885373 - MIR SINE MIR -73 135 55 1957 268 128 132 chr6 41530047 41530371 -140884871 - L2 LINE L2 -274 3039 2715 1529 134 38 80 chr6 41530371 41530543 -140884699 - AluJo SINE Alu -11 301 123 2174 76 62 28 chr6 41530543 41530832 -140884410 - AluSq SINE Alu -14 299 1 2058 142 3 13 chr6 41530838 41531149 -140884093 - AluSx SINE Alu -4 308 1 1529 134 38 80 chr6 41531149 41531282 -140883960 - AluJo SINE Alu -194 118 2 1957 268 128 132 chr6 41531282 41533914 -140881328 - L2 LINE L2 -598 2715 87 2077 94 31 0 chr6 41533925 41534213 -140881029 - AluSq SINE Alu -15 298 2 274 220 23 130 chr6 41534254 41534431 -140880811 + L2 LINE L2 2795 2937 -335 792 239 61 65 chr6 41534437 41534700 -140880542 + MIR SINE MIR 1 262 0 180 308 170 51 chr6 41534695 41534948 -140880294 + L2 LINE L2 2943 3225 -88 * 730 178 81 22 chr6 41535103 41535288 -140879954 + MER58A DNA MER1_type 29 224 0 250 234 54 27 chr6 41535295 41535406 -140879836 + L1ME4a LINE L1 5959 6072 -49 24 53 0 0 chr6 41536129 41536167 -140879075 + AT_rich Low_complexity Low_complexity 1 38 0 876 113 0 70 chr6 41538456 41538598 -140876644 + FLAM_C SINE Alu 1 132 -1 192 172 0 103 chr6 41539165 41539223 -140876019 - MIR SINE MIR -62 146 95 234 378 0 0 chr6 41539228 41539310 -140875932 - L2 LINE L2 -2 3311 3230 334 296 87 20 chr6 41539821 41540017 -140875225 + L1ME4a LINE L1 5528 5736 -385 263 187 66 33 chr6 41540127 41540218 -140875024 + L1ME4a LINE L1 5955 6048 -73 1232 104 6 0 chr6 41540378 41540541 -140874701 + AluSp SINE Alu 136 299 -14 1370 165 75 15 chr6 41541423 41541689 -140873553 + AluJo SINE Alu 1 282 -30 2380 65 0 29 chr6 41541689 41541996 -140873246 - AluSx SINE Alu -14 298 1 28 29 0 0 chr6 41542053 41542088 -140873154 + AT_rich Low_complexity Low_complexity 1 35 0 255 31 0 0 chr6 41542470 41542502 -140872740 + (TTG)n Simple_repeat Simple_repeat 2 33 0 688 190 0 0 chr6 41542507 41542623 -140872619 - FLAM_A SINE Alu -17 116 1 255 300 30 20 chr6 41542870 41542970 -140872272 - LTR16C LTR ERVL -75 416 316 285 75 0 0 chr6 41544259 41544299 -140870943 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 411 266 66 2 chr6 41544537 41544650 -140870592 + MIR3 SINE MIR 53 172 -36 1760 165 7 10 chr6 41544785 41545082 -140870160 - AluSx SINE Alu -16 296 1 233 191 11 128 chr6 41545148 41545242 -140870000 - MER102a DNA MER1_type 0 330 248 2328 125 0 0 chr6 41545452 41545764 -140869478 - AluSx SINE Alu 0 312 1 1756 176 71 0 chr6 41545837 41546112 -140869130 - MER7A DNA MER2_type -2692 346 45 1629 173 7 11 chr6 41546112 41546384 -140868858 + AluJb SINE Alu 1 271 -41 1756 176 71 0 chr6 41546384 41546432 -140868810 - MER7A DNA MER2_type -2993 45 2 264 30 0 0 chr6 41546871 41546904 -140868338 + (TG)n Simple_repeat Simple_repeat 2 34 0 992 198 12 0 chr6 41546913 41547080 -140868162 - AluJo SINE Alu -139 173 5 271 270 40 14 chr6 41547530 41547604 -140867638 - L2 LINE L2 -9 3304 3229 667 269 79 36 chr6 41547679 41547984 -140867258 + L2 LINE L2 2804 3121 -192 360 0 0 0 chr6 41548314 41548354 -140866888 + (TG)n Simple_repeat Simple_repeat 2 41 0 365 281 83 0 chr6 41548905 41549026 -140866216 - MIR SINE MIR -50 212 82 297 75 0 0 chr6 41549548 41549588 -140865654 + (TG)n Simple_repeat Simple_repeat 2 41 0 243 355 122 41 chr6 41550039 41550236 -140865006 + L2 LINE L2 3006 3218 -54 1139 227 72 63 chr6 41550652 41551294 -140863948 - L2 LINE L2 -23 3290 2649 194 81 27 0 chr6 41551894 41551931 -140863311 + (CTTTA)n Simple_repeat Simple_repeat 3 40 0 210 71 0 0 chr6 41552506 41552534 -140862708 + (TC)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr6 41552688 41552710 -140862532 + AT_rich Low_complexity Low_complexity 1 22 0 575 282 31 71 chr6 41553091 41553346 -140861896 + MIR SINE MIR 14 258 -4 2341 97 0 0 chr6 41553857 41554156 -140861086 + AluSx SINE Alu 1 299 -13 585 187 154 0 chr6 41554669 41554792 -140860450 - FLAM_C SINE Alu -1 142 1 1519 153 46 23 chr6 41554897 41555158 -140860084 + AluJo SINE Alu 39 305 -7 2229 96 6 13 chr6 41555291 41555604 -140859638 + AluY SINE Alu 1 311 0 604 233 171 21 chr6 41555923 41556163 -140859079 - L1MC5 LINE L1 -79 7882 7607 22 70 0 0 chr6 41557093 41557136 -140858106 + AT_rich Low_complexity Low_complexity 1 43 0 2278 106 0 3 chr6 41557417 41557720 -140857522 - AluSc SINE Alu -7 302 1 1207 230 65 43 chr6 41557721 41557751 -140857491 - L1ME1 LINE L1 -115 6051 6023 2393 95 0 0 chr6 41557751 41558056 -140857186 + AluY SINE Alu 1 305 -6 1207 230 65 43 chr6 41558056 41558443 -140856799 - L1ME1 LINE L1 -143 6023 5625 859 260 57 0 chr6 41560887 41561114 -140854128 + MIR SINE MIR 2 241 -21 330 272 19 19 chr6 41561703 41561806 -140853436 - MER5B DNA MER1_type -1 177 75 305 200 0 17 chr6 41561955 41562015 -140853227 - MIR3 SINE MIR -39 169 111 1353 98 89 14 chr6 41562207 41562421 -140852821 + MER30 DNA MER1_type 1 230 0 400 197 8 86 chr6 41562525 41562642 -140852600 + MER3 DNA MER1_type 6 113 -96 5407 169 43 46 chr6 41562717 41562759 -140852483 - L1MB4 LINE L1 -7 6173 6132 2130 102 32 0 chr6 41562759 41563043 -140852199 - AluSx SINE Alu -19 293 1 5407 169 43 46 chr6 41563043 41565211 -140850031 - L1MB4 LINE L1 -48 6132 3979 2109 148 87 8 chr6 41565211 41565604 -140849638 - MSTB LTR MaLR -2 424 1 5407 169 43 46 chr6 41565604 41565642 -140849600 - L1MB4 LINE L1 -2201 3979 3942 23084 155 32 22 chr6 41565851 41571247 -140843995 + L1PA10 LINE L1 3 5671 -812 2372 91 0 0 chr6 41571247 41571544 -140843698 + AluY SINE Alu 1 297 -14 23084 155 32 22 chr6 41571544 41572364 -140842878 + L1PA10 LINE L1 5671 6482 -1 817 158 6 109 chr6 41573133 41573316 -140841926 - AluSg/x SINE Alu -15 297 134 1724 74 0 5 chr6 41573334 41573549 -140841693 - AluSg/x SINE Alu -14 296 83 210 118 0 0 chr6 41574641 41574675 -140840567 + (T)n Simple_repeat Simple_repeat 1 34 0 2609 55 0 7 chr6 41576244 41576553 -140838689 + AluY SINE Alu 1 307 -4 666 178 132 17 chr6 41577100 41577274 -140837968 - MER58A DNA MER1_type -2 222 29 589 259 149 31 chr6 41577476 41577765 -140837477 - L2 LINE L2 -9 3304 2982 221 143 0 104 chr6 41578683 41578760 -140836482 + (TTTTTG)n Simple_repeat Simple_repeat 3 71 0 232 286 0 0 chr6 41579015 41579071 -140836171 + (CGTG)n Simple_repeat Simple_repeat 2 57 0 352 265 41 10 chr6 41580020 41580118 -140835124 - MIR SINE MIR -68 140 40 867 215 6 0 chr6 41581199 41581357 -140833885 + FRAM SINE Alu 2 160 -6 1641 184 14 7 chr6 41583964 41584252 -140830990 + AluJo SINE Alu 1 290 -22 1790 128 9 94 chr6 41584296 41584616 -140830626 - AluJb SINE Alu -17 295 3 286 306 36 18 chr6 41584762 41584873 -140830369 - MIR SINE MIR -1 261 149 270 0 0 0 chr6 41586129 41586159 -140829083 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1541 190 25 15 chr6 41586168 41586442 -140828800 - AluJo SINE Alu -34 278 2 2352 109 0 0 chr6 41587190 41587493 -140827749 - AluY SINE Alu -8 303 1 759 268 0 12 chr6 41588053 41588217 -140827025 - FRAM SINE Alu -18 158 1 531 244 167 114 chr6 41588730 41589596 -140825646 + L1MC5 LINE L1 7145 8041 -1 693 196 7 20 chr6 41589899 41590052 -140825190 + L1PB4 LINE L1 6006 6156 0 258 32 0 0 chr6 41590076 41590107 -140825135 + (CA)n Simple_repeat Simple_repeat 2 32 0 296 260 136 19 chr6 41590686 41590840 -140824402 - MIR SINE MIR -71 191 20 225 180 0 0 chr6 41591374 41591424 -140823818 + (TG)n Simple_repeat Simple_repeat 2 51 0 1655 220 24 9 chr6 41593849 41594185 -140821057 + MER58B DNA MER1_type 1 341 0 2506 77 0 0 chr6 41594731 41595028 -140820214 + AluY SINE Alu 1 297 -14 1397 121 60 19 chr6 41595960 41596175 -140819067 + AluJo SINE Alu 86 309 -3 427 248 34 0 chr6 41596196 41596313 -140818929 + L1MC/D LINE L1 5689 5809 -1999 1266 161 9 40 chr6 41596810 41597033 -140818209 - MER20 DNA MER1_type 0 219 4 2445 80 0 3 chr6 41597141 41597441 -140817801 + AluSq SINE Alu 1 299 -14 1787 189 132 78 chr6 41598132 41598309 -140816933 - MER20B DNA MER1_type 0 783 617 1821 150 3 45 chr6 41598309 41598452 -140816790 + AluJb SINE Alu 1 148 -164 1859 112 51 61 chr6 41598452 41598764 -140816478 + AluSc SINE Alu 1 309 0 1821 150 3 45 chr6 41598764 41598934 -140816308 + AluJb SINE Alu 148 301 -11 1787 189 132 78 chr6 41598934 41599466 -140815776 - MER20B DNA MER1_type -166 617 35 218 160 20 20 chr6 41599561 41599611 -140815631 + CT-rich Low_complexity Low_complexity 4 53 0 24 32 0 0 chr6 41599806 41599837 -140815405 + AT_rich Low_complexity Low_complexity 1 31 0 304 283 69 44 chr6 41600160 41600319 -140814923 + L2 LINE L2 2917 3079 -193 227 180 213 16 chr6 41600500 41600561 -140814681 + MIR SINE MIR 174 246 -16 331 322 0 0 chr6 41600596 41600683 -140814559 + L2 LINE L2 3227 3313 0 363 245 153 0 chr6 41601082 41601180 -140814062 - L2 LINE L2 0 3313 3201 361 247 30 42 chr6 41602240 41602406 -140812836 + L1ME3 LINE L1 5666 5829 -333 968 165 21 21 chr6 41602438 41602632 -140812610 + MER20 DNA MER1_type 22 215 -4 971 219 18 25 chr6 41602815 41603056 -140812186 + MIR SINE MIR 5 241 -21 252 321 113 0 chr6 41603548 41603654 -140811588 + L2 LINE L2 3115 3232 -40 963 240 41 8 chr6 41604568 41604810 -140810432 + MIR SINE MIR 8 257 -5 360 273 0 40 chr6 41604812 41604911 -140810331 - MIR SINE MIR -70 138 44 529 243 97 40 chr6 41605308 41605534 -140809708 - L2 LINE L2 -40 3232 2994 279 173 0 0 chr6 41605899 41605951 -140809291 + GA-rich Low_complexity Low_complexity 4 55 0 405 254 87 22 chr6 41606394 41606532 -140808710 - L2 LINE L2 -5 3267 3121 211 204 0 20 chr6 41606837 41606886 -140808356 + G-rich Low_complexity Low_complexity 5 52 0 446 159 11 0 chr6 41606903 41606991 -140808251 + CT-rich Low_complexity Low_complexity 1 89 0 2299 108 0 0 chr6 41606991 41607287 -140807955 - AluSq SINE Alu -17 296 1 2354 66 42 0 chr6 41607448 41607734 -140807508 + AluSx SINE Alu 1 298 -14 543 224 161 6 chr6 41607897 41608071 -140807171 + L2 LINE L2 2966 3166 -147 1880 125 54 14 chr6 41608110 41608390 -140806852 - AluJb SINE Alu -21 291 1 623 278 79 17 chr6 41608609 41608818 -140806424 - MIR SINE MIR -25 237 17 559 245 14 22 chr6 41609275 41609414 -140805828 + MIR SINE MIR 17 154 -108 2782 188 41 7 chr6 41609431 41610012 -140805230 + MER90 LTR ERV1 12 612 -2 223 232 12 73 chr6 41610013 41610095 -140805147 + MIR SINE MIR 154 230 -32 536 239 43 14 chr6 41610098 41610236 -140805006 - MIR SINE MIR -108 154 13 1019 216 66 9 chr6 41611089 41611316 -140803926 + MIR SINE MIR 1 240 -22 2305 108 0 0 chr6 41611904 41612201 -140803041 + AluSx SINE Alu 1 297 -15 492 164 118 111 chr6 41612209 41612280 -140802962 + L1MC5 LINE L1 7613 7682 -279 1931 83 80 0 chr6 41612280 41612544 -140802698 + AluSg1 SINE Alu 1 285 -24 492 164 118 111 chr6 41612544 41612734 -140802508 + L1MC5 LINE L1 7682 7876 -85 491 170 206 43 chr6 41612752 41612893 -140802349 + MER5A DNA MER1_type 26 189 0 36 70 0 0 chr6 41613255 41613326 -140801916 + GC_rich Low_complexity Low_complexity 1 71 0 22 35 0 0 chr6 41613519 41613548 -140801694 + GC_rich Low_complexity Low_complexity 1 29 0 223 247 52 21 chr6 41613742 41613839 -140801403 - MIR3 SINE MIR -35 173 74 213 283 160 0 chr6 41614418 41614524 -140800718 - MIR SINE MIR -90 172 50 642 298 164 0 chr6 41614557 41614782 -140800460 - MIR SINE MIR 0 262 1 340 297 231 28 chr6 41616374 41616937 -140798305 - L2 LINE L2 -925 2389 1713 210 37 0 0 chr6 41617123 41617150 -140798092 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1412 216 17 17 chr6 41617208 41617504 -140797738 - AluJo SINE Alu -16 296 1 587 181 0 71 chr6 41617506 41617538 -140797704 - FLAM_C SINE Alu -177 135 102 2398 103 0 3 chr6 41617538 41617848 -140797394 + AluSx SINE Alu 1 309 -3 587 181 0 71 chr6 41617848 41617942 -140797300 - FLAM_C SINE Alu -210 102 18 25 0 0 0 chr6 41617951 41617976 -140797266 + AT_rich Low_complexity Low_complexity 1 25 0 689 214 50 22 chr6 41619099 41619281 -140795961 - MIR3 SINE MIR -7 201 15 1736 157 70 0 chr6 41619894 41620040 -140795202 + AluJo SINE Alu 1 135 -177 2513 73 0 0 chr6 41620040 41620341 -140794901 + AluY SINE Alu 1 301 -10 1736 157 70 0 chr6 41620341 41620481 -140794761 + AluJo SINE Alu 135 307 -5 2333 94 10 3 chr6 41620489 41620787 -140794455 + AluSx SINE Alu 5 304 -8 1447 219 142 19 chr6 41622487 41622903 -140792339 - MLT1C LTR MaLR 0 467 1 534 205 94 8 chr6 41623267 41623384 -140791858 - MER5A DNA MER1_type 0 189 63 415 214 6 138 chr6 41623291 41623450 -140791792 + MER5A DNA MER1_type 45 182 -7 * 213 267 139 0 chr6 41623493 41623579 -140791663 - MIR3 SINE MIR -1 207 110 1755 139 0 79 chr6 41623580 41623897 -140791345 - AluJb SINE Alu -10 302 11 1391 169 68 4 chr6 41623914 41624193 -140791049 + L1MC2 LINE L1 6028 6324 -20 2381 90 10 3 chr6 41624198 41624498 -140790744 + AluSx SINE Alu 1 302 -10 236 240 120 13 chr6 41624502 41624577 -140790665 - MIR SINE MIR -139 123 41 364 280 32 0 chr6 41624978 41625071 -140790171 - MER103 DNA DNA -69 97 2 1162 151 0 6 chr6 41626807 41626979 -140788263 - AluJb SINE Alu -11 301 131 1175 212 117 35 chr6 41626979 41627380 -140787862 - Charlie4a DNA MER1_type -69 439 6 2241 124 18 24 chr6 41627600 41627939 -140787303 - MER1B DNA MER1_type 0 337 1 194 114 0 29 chr6 41628027 41628062 -140787180 - MIR SINE MIR -66 142 109 1104 272 178 15 chr6 41628617 41629146 -140786096 + MLT1L LTR MaLR 1 615 0 1573 122 0 26 chr6 41629332 41629562 -140785680 - AluJo SINE Alu -4 308 85 328 239 248 0 chr6 41629699 41629816 -140785426 + MIR SINE MIR 117 262 0 244 314 0 14 chr6 41630935 41631005 -140784237 + MIR SINE MIR 17 85 -177 421 59 0 0 chr6 41631005 41631056 -140784186 - MLT2C2 LTR ERVL 0 464 414 232 155 56 14 chr6 41631069 41631140 -140784102 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 9523 42 4 1 chr6 41631144 41632210 -140783032 - MER11C LTR ERVK -2 1069 1 403 84 53 0 chr6 41632232 41632327 -140782915 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 2188 139 45 6 chr6 41632330 41632683 -140782559 - MLT2C2 LTR ERVL -56 408 42 193 333 50 10 chr6 41632708 41632807 -140782435 + MIR SINE MIR 88 190 -72 220 321 0 0 chr6 41633387 41633440 -140781802 + polypyrimidine Low_complexity Low_complexity 4 56 0 414 0 0 0 chr6 41633743 41633789 -140781453 + (CA)n Simple_repeat Simple_repeat 2 47 0 779 200 0 8 chr6 41633801 41633931 -140781311 + FLAM_A SINE Alu 4 132 -1 2982 154 17 84 chr6 41633955 41634087 -140781155 - L1MC3 LINE L1 -32 7753 7614 2265 101 3 0 chr6 41634087 41634384 -140780858 - AluSx SINE Alu -14 298 1 2982 154 17 84 chr6 41634384 41634855 -140780387 - L1MC3 LINE L1 -171 7614 7191 347 210 98 54 chr6 41634855 41634948 -140780294 - MLT1F1 LTR MaLR -379 170 35 280 175 145 9 chr6 41634948 41635061 -140780181 - L1MC3 LINE L1 -688 7097 6964 2258 123 45 31 chr6 41635079 41635438 -140779804 + THE1B LTR MaLR 1 364 0 498 171 0 45 chr6 41635451 41635539 -140779703 - AluSg/x SINE Alu -24 288 205 239 274 49 10 chr6 41635577 41635679 -140779563 - L1 LINE L1 -2616 3530 3425 1484 143 5 0 chr6 41635776 41635992 -140779250 - AluSq SINE Alu -96 217 1 2249 114 3 0 chr6 41636001 41636298 -140778944 - AluSx SINE Alu -14 298 1 273 315 126 0 chr6 41636699 41636826 -140778416 - MIR SINE MIR -14 248 106 541 324 53 0 chr6 41636847 41637072 -140778170 + L2 LINE L2 2042 2278 -1036 1934 264 121 52 chr6 41637116 41637763 -140777479 + L1ME LINE L1 6 607 -5475 2248 114 0 3 chr6 41637763 41638071 -140777171 + AluSc SINE Alu 1 307 -2 1934 264 121 52 chr6 41638071 41638760 -140776482 + L1ME LINE L1 607 1322 -4760 21 0 0 0 chr6 41638806 41638827 -140776415 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 41638897 41638919 -140776323 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr6 41639042 41639069 -140776173 + (TG)n Simple_repeat Simple_repeat 1 27 0 2870 101 5 16 chr6 41639138 41639515 -140775727 - THE1C LTR MaLR 0 375 3 207 186 0 0 chr6 41639774 41639817 -140775425 + (CATA)n Simple_repeat Simple_repeat 2 44 0 22 94 0 0 chr6 41639817 41639881 -140775361 + AT_rich Low_complexity Low_complexity 1 64 0 274 208 144 64 chr6 41639991 41640116 -140775126 - HAL1b LINE L1 -1013 335 201 450 138 15 0 chr6 41640142 41640207 -140775035 - MER2 DNA MER2_type -1 344 279 185 94 28 66 chr6 41640208 41640314 -140774928 + A-rich Low_complexity Low_complexity 4 105 0 545 80 11 23 chr6 41640340 41640428 -140774814 - MER2 DNA MER2_type -134 211 125 1171 195 15 5 chr6 41640429 41640634 -140774608 + AluJb SINE Alu 82 288 -24 785 194 0 0 chr6 41640654 41640778 -140774464 - MER2 DNA MER2_type -209 136 13 381 177 0 0 chr6 41640783 41640862 -140774380 + (CA)n Simple_repeat Simple_repeat 2 80 0 2151 170 19 4 chr6 41640862 41641443 -140773799 - L1MC/D LINE L1 -707 5637 5048 880 149 8 15 chr6 41641948 41642082 -140773160 - FLAM_C SINE Alu 0 133 1 1842 168 7 13 chr6 41642118 41642422 -140772820 - AluJb SINE Alu -10 302 1 475 84 0 0 chr6 41642612 41642683 -140772559 + Alu SINE Alu 242 312 0 2000 141 0 10 chr6 41642748 41643047 -140772195 - AluJb SINE Alu -16 296 1 2087 178 35 21 chr6 41643138 41643560 -140771682 - MLT1C LTR MaLR -1 466 39 1623 137 113 103 chr6 41644464 41644535 -140770707 + MER66A LTR ERV1 27 96 -382 1760 172 0 3 chr6 41644535 41644825 -140770417 + AluJb SINE Alu 1 289 -23 1623 137 113 103 chr6 41644825 41645161 -140770081 + MER66A LTR ERV1 96 438 -40 235 246 29 0 chr6 41645454 41645523 -140769719 - L1 LINE L1 -1706 4440 4370 1343 135 14 0 chr6 41645658 41645865 -140769377 + Tigger7 DNA MER2_type 271 480 -253 1561 149 21 43 chr6 41645872 41646154 -140769088 + AluJo SINE Alu 2 277 -35 2552 170 61 50 chr6 41646154 41646184 -140769058 - L1MB5 LINE L1 -32 6142 6114 2166 128 0 0 chr6 41646184 41646489 -140768753 + AluSx SINE Alu 1 305 -7 2552 170 61 50 chr6 41646489 41646775 -140768467 - L1MB5 LINE L1 -60 6114 5815 1990 152 3 3 chr6 41646775 41647077 -140768165 - AluJb SINE Alu -10 302 1 2552 170 61 50 chr6 41647077 41647319 -140767923 - L1MB5 LINE L1 -359 5815 5577 1697 142 0 4 chr6 41648299 41648546 -140766696 + AluJo SINE Alu 63 308 -4 6471 138 8 6 chr6 41648581 41650087 -140765155 + L1PB1 LINE L1 4640 6149 -2 220 305 30 73 chr6 41650605 41650838 -140764404 - L2 LINE L2 -208 3064 2842 1721 176 0 33 chr6 41651394 41651701 -140763541 - AluJo SINE Alu -15 297 1 1123 197 45 96 chr6 41652342 41652718 -140762524 + L1MD1 LINE L1 5885 6241 -1 * 1638 153 63 52 chr6 41652713 41653079 -140762163 + L1MB7 LINE L1 5813 6182 -2 1657 156 32 25 chr6 41653095 41653378 -140761864 + AluJo SINE Alu 3 287 -25 2289 197 50 24 chr6 41653387 41654046 -140761196 + L1ME1 LINE L1 5476 6184 0 284 275 96 44 chr6 41654073 41654324 -140760918 - HAL1 LINE L1 -1417 1090 827 519 302 46 22 chr6 41655078 41655427 -140759815 + ERVL LTR ERVL 3177 3557 -2207 774 290 40 57 chr6 41655438 41655810 -140759432 + ERVL LTR ERVL 4593 4958 -806 551 156 0 0 chr6 41655952 41656029 -140759213 - AluJb SINE Alu -26 286 210 273 338 37 23 chr6 41656173 41656342 -140758900 + ERVL LTR ERVL 5217 5390 -264 1925 112 58 0 chr6 41656461 41656738 -140758504 - AluSx SINE Alu -19 293 1 414 100 0 0 chr6 41656966 41657026 -140758216 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 595 293 42 0 chr6 41657106 41657412 -140757830 + L1MD1 LINE L1 2593 2910 -3734 1339 161 5 5 chr6 41657479 41657697 -140757545 - AluSg/x SINE Alu -10 302 85 419 239 101 0 chr6 41657730 41657889 -140757353 + L1MD1 LINE L1 3149 3323 -3321 2265 104 0 0 chr6 41657911 41658210 -140757032 + AluSx SINE Alu 13 311 -1 308 125 0 18 chr6 41658210 41658266 -140756976 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 3799 201 46 23 chr6 41658266 41659800 -140755442 + L1MD1 LINE L1 4974 6595 -145 6778 217 34 49 chr6 41659816 41659953 -140755289 + L1MDa LINE L1 14 151 -6483 306 0 0 0 chr6 41659953 41659987 -140755255 + (CA)n Simple_repeat Simple_repeat 1 34 0 6778 217 34 49 chr6 41659987 41660396 -140754846 + L1MDa LINE L1 151 564 -6070 2134 123 0 3 chr6 41660396 41660689 -140754553 - AluSx SINE Alu -20 292 1 6778 217 34 49 chr6 41660689 41661954 -140753288 + L1MDa LINE L1 564 1801 -4833 849 101 7 67 chr6 41661954 41662103 -140753139 + L1MD1 LINE L1 6084 6223 -19 472 285 43 70 chr6 41662105 41662402 -140752840 + L1MDa LINE L1 3359 3640 -3004 677 267 0 0 chr6 41662402 41662533 -140752709 + FLAM_A SINE Alu 1 131 -2 472 285 43 70 chr6 41662533 41662705 -140752537 + L1MDa LINE L1 3640 3815 -2829 1275 182 26 125 chr6 41662858 41663307 -140751935 + MLT1A1 LTR MaLR 4 365 0 843 233 67 137 chr6 41663308 41663670 -140751572 + L1MDa LINE L1 4041 4427 -2217 5072 167 20 59 chr6 41663670 41664568 -140750674 - MER21B LTR ERV1 0 863 1 843 233 67 137 chr6 41664568 41664772 -140750470 + L1MDa LINE L1 4427 4555 -2089 1752 137 0 4 chr6 41664772 41665027 -140750215 + AluJo SINE Alu 40 293 -19 843 233 67 137 chr6 41665027 41665133 -140750109 + L1MDa LINE L1 4555 4667 -1977 222 37 0 0 chr6 41665133 41665160 -140750082 + (GA)n Simple_repeat Simple_repeat 2 28 0 2903 209 24 20 chr6 41665174 41666363 -140748879 + L1M3e LINE L1 1692 2886 -4221 1332 116 21 47 chr6 41666364 41666522 -140748720 + L1MA7 LINE L1 5669 5830 -461 1269 177 155 26 chr6 41666522 41666787 -140748455 + AluJo SINE Alu 3 301 -1 1332 116 21 47 chr6 41666787 41666818 -140748424 + L1MA7 LINE L1 5830 5860 -431 2551 186 21 60 chr6 41666818 41667333 -140747909 + LTR42 LTR ERVL 1 495 0 1332 116 21 47 chr6 41667333 41667375 -140747867 + L1MA7 LINE L1 5860 5895 -396 292 244 153 29 chr6 41667354 41667377 -140747865 + L1MDa LINE L1 4636 4655 -1989 * 779 73 0 27 chr6 41667377 41667487 -140747755 + L1MA9 LINE L1 6206 6312 0 292 244 153 29 chr6 41667487 41667672 -140747570 + L1MDa LINE L1 4655 4870 -1774 2159 117 17 0 chr6 41667826 41668117 -140747125 - AluSx SINE Alu -16 296 1 1393 192 29 25 chr6 41668202 41668517 -140746725 - AluJo SINE Alu 0 316 1 1225 162 30 0 chr6 41668552 41668750 -140746492 - MER68 LTR ERV1 0 562 359 386 169 26 26 chr6 41668738 41668815 -140746427 - MER68 LTR ERV1 -418 144 68 * 1130 186 22 22 chr6 41668856 41669082 -140746160 - AluJo SINE Alu -82 230 5 2668 94 27 16 chr6 41669105 41669476 -140745766 + THE1C LTR MaLR 1 375 0 627 299 91 11 chr6 41669483 41669757 -140745485 - HAL1 LINE L1 -444 2063 1768 378 123 0 0 chr6 41669757 41669814 -140745428 - MSTA LTR MaLR 0 428 372 483 32 123 0 chr6 41669814 41670041 -140745201 + (TA)n Simple_repeat Simple_repeat 1 254 0 25 0 0 0 chr6 41670042 41670067 -140745175 + AT_rich Low_complexity Low_complexity 1 25 0 1885 120 99 12 chr6 41670074 41670408 -140744834 - MSTA LTR MaLR -64 364 2 1388 218 168 82 chr6 41670408 41671100 -140744142 - HAL1 LINE L1 -748 1759 1128 1757 166 14 3 chr6 41671100 41671390 -140743852 - AluJo SINE Alu -19 293 1 2088 129 0 3 chr6 41671396 41671698 -140743544 - AluSx SINE Alu -10 302 2 767 174 8 38 chr6 41671700 41671832 -140743410 - AluJo/FLAM SINE Alu -174 128 1 1388 218 168 82 chr6 41671832 41672036 -140743206 - HAL1 LINE L1 -1383 1124 775 419 338 153 0 chr6 41672189 41672346 -140742896 - MER5A DNA MER1_type 0 189 9 1619 192 24 0 chr6 41672358 41672649 -140742593 + AluJb SINE Alu 1 298 -14 346 304 14 47 chr6 41672891 41673039 -140742203 - HAL1 LINE L1 -1920 587 445 280 223 72 93 chr6 41673042 41673181 -140742061 - HAL1 LINE L1 -2364 143 8 225 260 67 63 chr6 41673245 41673468 -140741774 - L1MEc LINE L1 -4140 2256 2033 * 809 216 83 29 chr6 41673465 41673706 -140741536 - L1ME1 LINE L1 -5 6161 5908 193 286 16 32 chr6 41673817 41673880 -140741362 - MER5A DNA MER1_type 0 189 128 442 156 47 94 chr6 41674460 41674588 -140740654 + LTR54 LTR ERV1 62 183 -327 766 208 34 10 chr6 41674622 41674829 -140740413 + LTR54 LTR ERV1 299 510 0 250 286 26 58 chr6 41674839 41674993 -140740249 + L2 LINE L2 2934 3082 -190 230 214 257 0 chr6 41675692 41675762 -140739480 + MLT1K LTR MaLR 131 218 -370 * 380 310 63 13 chr6 41675761 41675919 -140739323 + MLT1K LTR MaLR 408 573 -15 2886 10 0 0 chr6 41676581 41676887 -140738355 + AluYa5 SINE Alu 1 306 -5 23 0 0 0 chr6 41678792 41678815 -140736427 + AT_rich Low_complexity Low_complexity 1 23 0 25 95 0 0 chr6 41679314 41679388 -140735854 + GC_rich Low_complexity Low_complexity 1 74 0 36 40 0 0 chr6 41679591 41679641 -140735601 + GC_rich Low_complexity Low_complexity 1 50 0 208 191 0 73 chr6 41679753 41679821 -140735421 + G-rich Low_complexity Low_complexity 5 67 0 337 259 181 0 chr6 41681122 41681238 -140734004 - MIR SINE MIR -111 151 15 304 217 212 35 chr6 41681274 41681417 -140733825 + MIR SINE MIR 22 188 -74 184 325 0 106 chr6 41681714 41681865 -140733377 + L3b LINE CR1 1445 1579 -4 2201 100 72 16 chr6 41681904 41682223 -140733019 + MER1B DNA MER1_type 1 337 0 1504 232 8 49 chr6 41682629 41683017 -140732225 - L2 LINE L2 -1 3312 2941 198 171 0 0 chr6 41684383 41684424 -140730818 + GA-rich Low_complexity Low_complexity 2 42 0 576 234 44 75 chr6 41684833 41685059 -140730183 - MER20 DNA MER1_type 0 219 1 300 222 0 139 chr6 41685390 41685498 -140729744 - MIR3 SINE MIR -13 195 103 296 231 0 15 chr6 41685508 41685573 -140729669 - L2 LINE L2 -1 3312 3249 939 220 83 6 chr6 41685976 41686199 -140729043 + MIR SINE MIR 23 259 -3 303 236 29 114 chr6 41686610 41686750 -140728492 + MIR SINE MIR 49 176 -86 533 170 20 10 chr6 41687939 41688039 -140727203 - MER91B DNA MER1_type -29 161 61 323 317 17 25 chr6 41690484 41690604 -140724638 - MER5B DNA MER1_type -59 119 1 1232 215 4 23 chr6 41690732 41690997 -140724245 + MIR SINE MIR 3 262 0 762 169 22 0 chr6 41691161 41691297 -140723945 + BC200 scRNA scRNA 2 140 -60 249 269 46 83 chr6 41691841 41691949 -140723293 + MIR SINE MIR 30 133 -75 318 198 62 0 chr6 41692004 41692085 -140723157 + MIR SINE MIR 126 211 -51 490 228 124 88 chr6 41692085 41692335 -140722907 + MIR SINE MIR 3 261 -1 229 261 69 69 chr6 41695391 41695478 -140719764 - MER5B DNA MER1_type -48 130 41 2845 10 0 0 chr6 41695478 41695781 -140719461 + AluYb8 SINE Alu 1 303 -15 229 261 69 69 chr6 41695781 41695823 -140719419 - MER5B DNA MER1_type -136 42 1 599 278 53 6 chr6 41696022 41696191 -140719051 - MER5B DNA MER1_type 0 178 2 1881 155 0 30 chr6 41696222 41696525 -140718717 + AluJo SINE Alu 5 298 -14 1122 252 182 14 chr6 41697473 41697897 -140717345 - L2 LINE L2 -1 3312 2818 2227 95 27 0 chr6 41697917 41698212 -140717030 - AluSx SINE Alu -5 307 5 509 285 98 21 chr6 41698855 41699048 -140716194 + MIR SINE MIR 11 218 -44 217 312 166 6 chr6 41699263 41699420 -140715822 - MIR SINE MIR -62 200 19 1676 177 17 13 chr6 41699563 41699862 -140715380 + AluJb SINE Alu 1 300 -12 2345 91 7 0 chr6 41701268 41701565 -140713677 - AluSx SINE Alu -13 299 1 186 313 30 30 chr6 41702606 41702673 -140712569 - L3b LINE CR1 -3 1580 1514 323 185 46 46 chr6 41702751 41702816 -140712426 - L2 LINE L2 -2 3311 3247 541 242 263 10 chr6 41703143 41703341 -140711901 - MIR SINE MIR -14 248 1 196 170 19 94 chr6 41703915 41703968 -140711274 - MER5B DNA MER1_type -20 158 110 2376 106 0 0 chr6 41704088 41704391 -140710851 - AluSc SINE Alu -6 303 1 664 305 134 19 chr6 41705451 41705772 -140709470 - L1MC4a LINE L1 -1895 5913 5556 519 285 83 57 chr6 41706363 41706892 -140708350 - L1ME4a LINE L1 -187 5934 5392 909 158 0 0 chr6 41706892 41707025 -140708217 + FLAM_C SINE Alu 7 139 -4 1894 147 61 18 chr6 41707583 41707910 -140707332 + MER58B DNA MER1_type 1 341 0 325 259 193 52 chr6 41708519 41708654 -140706588 - MIR SINE MIR -96 166 13 969 263 94 12 chr6 41708697 41709101 -140706141 - L1ME4a LINE L1 -202 5919 5531 574 249 40 45 chr6 41709224 41709401 -140705841 + MER5B DNA MER1_type 1 176 -2 243 261 0 0 chr6 41709881 41709946 -140705296 - L1ME4a LINE L1 -98 6023 5959 225 65 0 0 chr6 41710036 41710067 -140705175 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 205 343 15 0 chr6 41710407 41710474 -140704768 + L3 LINE CR1 317 384 -1193 221 300 20 70 chr6 41711092 41711192 -140704050 - L2 LINE L2 -20 3252 3158 567 261 151 35 chr6 41712027 41712430 -140702812 - LTR16A LTR ERVL 0 450 1 399 307 185 0 chr6 41712562 41712767 -140702475 - MIR SINE MIR -17 245 3 281 256 33 44 chr6 41712767 41712837 -140702405 + MER5B DNA MER1_type 34 102 -76 1826 119 98 0 chr6 41715713 41715990 -140699252 - AluJo SINE Alu -8 304 1 279 295 116 39 chr6 41716310 41716439 -140698803 - MIR3 SINE MIR -21 187 49 204 375 97 40 chr6 41716773 41717021 -140698221 - L2 LINE L2 -16 3256 2995 240 347 62 14 chr6 41717519 41717663 -140697579 - L2 LINE L2 -931 2383 2233 204 246 218 9 chr6 41717834 41717944 -140697298 - MIR3 SINE MIR -61 147 15 4210 155 37 38 chr6 41718583 41719369 -140695873 + LTR1 LTR ERV1 1 785 0 234 0 0 0 chr6 41719449 41719475 -140695767 + (TG)n Simple_repeat Simple_repeat 2 27 0 341 279 123 32 chr6 41719909 41720063 -140695179 - L1ME4a LINE L1 -10 6111 5944 2382 235 49 15 chr6 41720577 41721215 -140694027 - L1ME3 LINE L1 0 6162 5521 2347 101 141 5 chr6 41721215 41721592 -140693650 - MSTA LTR MaLR 0 428 1 2382 235 49 15 chr6 41721592 41721638 -140693604 - L1ME3 LINE L1 -641 5521 5478 2027 139 0 25 chr6 41722060 41722377 -140692865 - AluJb SINE Alu -3 309 1 194 128 26 0 chr6 41723157 41723196 -140692046 + CT-rich Low_complexity Low_complexity 5 44 0 25 0 0 0 chr6 41723396 41723421 -140691821 + AT_rich Low_complexity Low_complexity 1 25 0 202 206 65 19 chr6 41723642 41723749 -140691493 + (TATAA)n Simple_repeat Simple_repeat 1 112 0 607 286 33 86 chr6 41723772 41723958 -140691284 - L1ME4a LINE L1 -268 5902 5708 1879 135 3 61 chr6 41723958 41724269 -140690973 - AluJb SINE Alu -19 293 1 607 286 33 86 chr6 41724269 41724603 -140690639 - L1ME4a LINE L1 -462 5708 5410 493 287 48 24 chr6 41724602 41724811 -140690431 - L1MC4a LINE L1 -1913 5895 5682 * 1757 135 30 4 chr6 41725112 41725528 -140689714 - AluJo SINE Alu 0 461 39 279 0 0 0 chr6 41725680 41725711 -140689531 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 316 72 36 chr6 41725746 41725885 -140689357 + MIR SINE MIR 55 198 -64 190 206 192 41 chr6 41726303 41726376 -140688866 + MER5A DNA MER1_type 105 188 -1 518 234 80 64 chr6 41726713 41726901 -140688341 - MIR SINE MIR -48 214 24 189 147 0 0 chr6 41726922 41726956 -140688286 + (TCC)n Simple_repeat Simple_repeat 3 36 0 271 228 7 116 chr6 41727130 41727302 -140687940 - L1MC4a LINE L1 -1855 5953 5801 4530 130 28 23 chr6 41727598 41728344 -140686898 - LTR39 LTR ERV1 -10 773 24 265 258 32 65 chr6 41728508 41728601 -140686641 - MIR SINE MIR -63 199 110 237 348 87 7 chr6 41728846 41728984 -140686258 - MIR SINE MIR -5 257 109 1326 176 29 21 chr6 41729012 41729250 -140685992 - AluJb SINE Alu -14 298 59 608 156 0 0 chr6 41779252 41779348 -140635894 - FRAM SINE Alu -14 162 67 544 268 26 23 chr6 41779424 41779596 -140635646 + MLT1I LTR MaLR 39 212 -197 241 214 22 112 chr6 41779629 41779692 -140635550 + MLT1I LTR MaLR 329 383 -26 1841 130 10 38 chr6 41779692 41779985 -140635257 + AluJo SINE Alu 12 296 -16 241 214 22 112 chr6 41779985 41780010 -140635232 + MLT1I LTR MaLR 383 409 0 245 200 0 0 chr6 41780208 41780253 -140634989 + LTR67 LTR ERVL 113 157 -400 234 241 0 17 chr6 41780209 41780267 -140634975 + MLT1J1 LTR MaLR 71 127 -319 * 256 265 0 0 chr6 41780327 41780395 -140634847 + MLT1L LTR MaLR 548 615 0 2046 124 7 3 chr6 41780925 41781224 -140634018 + AluSx SINE Alu 1 300 -12 259 271 116 34 chr6 41781254 41781461 -140633781 - L1ME LINE L1 -281 5840 5617 1867 158 10 10 chr6 41781513 41781805 -140633437 - AluJo SINE Alu -20 292 1 1948 154 3 3 chr6 41782329 41782627 -140632615 + AluJo SINE Alu 11 308 -4 222 317 69 41 chr6 41783031 41783126 -140632116 + MIR SINE MIR 59 161 -101 2130 95 0 44 chr6 41783126 41783249 -140631993 + AluSq SINE Alu 16 143 -170 2421 84 0 0 chr6 41783249 41783558 -140631684 + AluSp SINE Alu 1 309 0 2130 95 0 44 chr6 41783558 41783728 -140631514 + AluSq SINE Alu 143 297 -16 222 317 69 41 chr6 41783728 41783777 -140631465 + MIR SINE MIR 161 207 -55 304 237 247 0 chr6 41783871 41783964 -140631278 - MER5A DNA MER1_type -1 188 73 873 147 8 0 chr6 41784236 41784365 -140630877 + FLAM_C SINE Alu 2 131 -2 2284 115 0 0 chr6 41784476 41784772 -140630470 - AluSc SINE Alu -13 296 1 1439 197 45 4 chr6 41784801 41785199 -140630043 - LTR48 LTR ERV1 -43 744 135 299 274 170 0 chr6 41785177 41785283 -140629959 - MER39 LTR ERV1 -583 124 1 * 518 287 84 31 chr6 41785302 41785563 -140629679 - MLT1L LTR MaLR -28 587 313 1206 241 15 32 chr6 41785583 41785990 -140629252 - L1ME LINE L1 -5176 894 495 875 166 0 0 chr6 41786012 41786151 -140629091 - FLAM_C SINE Alu -4 139 1 1258 234 98 39 chr6 41786151 41786609 -140628633 - L1ME LINE L1 -5580 490 6 274 253 42 11 chr6 41786623 41786718 -140628524 - MLT1L LTR MaLR -326 289 192 225 269 0 43 chr6 41786835 41786928 -140628314 + MER103 DNA DNA 66 154 -12 2331 106 35 0 chr6 41787667 41788015 -140627227 + L1PA16 LINE L1 5798 6157 -9 1925 146 14 0 chr6 41788050 41788345 -140626897 + AluJo SINE Alu 14 312 0 338 191 48 38 chr6 41788667 41788772 -140626470 - L1MC4a LINE L1 -1863 5945 5840 355 249 56 58 chr6 41788801 41788847 -140626395 - L1ME4a LINE L1 -238 5883 5838 1711 146 0 55 chr6 41788847 41789155 -140626087 - AluJb SINE Alu -21 291 1 355 249 56 58 chr6 41789155 41789322 -140625920 - L1ME4a LINE L1 -283 5838 5673 505 257 59 35 chr6 41789677 41789868 -140625374 - MIR SINE MIR 0 262 23 737 281 87 34 chr6 41790667 41791048 -140624194 - L1MC4a LINE L1 -1845 5963 5563 342 304 59 50 chr6 41791329 41791651 -140623591 + L1MC/D LINE L1 5276 5600 -562 1483 225 96 56 chr6 41791659 41792193 -140623049 + MER74B LTR ERVL 50 604 -18 385 287 11 0 chr6 41792227 41792399 -140622843 + L1MC/D LINE L1 5654 5828 -334 2091 142 0 0 chr6 41793085 41793380 -140621862 + AluSq SINE Alu 1 295 -18 1268 236 82 84 chr6 41793845 41794383 -140620859 + MLT1F LTR MaLR 6 542 0 328 289 21 80 chr6 41794403 41794590 -140620652 - MLT1L LTR MaLR -221 394 219 332 242 118 6 chr6 41794735 41794902 -140620340 - L1MC5 LINE L1 -389 7419 7268 470 277 84 19 chr6 41796304 41796459 -140618783 - MIR SINE MIR -44 218 54 195 222 0 0 chr6 41796976 41797021 -140618221 + (CA)n Simple_repeat Simple_repeat 1 45 0 798 283 129 27 chr6 41799409 41799741 -140615501 - L2 LINE L2 -3 3310 2945 544 301 34 39 chr6 41799887 41800018 -140615224 + MIR SINE MIR 47 178 -84 3635 104 41 6 chr6 41800018 41800527 -140614715 - MER1A DNA MER1_type 0 527 1 544 301 34 39 chr6 41800527 41800601 -140614641 + MIR SINE MIR 178 251 -11 255 318 47 0 chr6 41800659 41800766 -140614476 - L2 LINE L2 -728 2586 2475 1792 124 56 8 chr6 41800999 41801312 -140613930 + AluSg SINE Alu 1 326 0 748 196 0 15 chr6 41801639 41801772 -140613470 + FLAM_C SINE Alu 3 133 0 949 244 45 5 chr6 41802106 41802327 -140612915 - MIR SINE MIR -21 241 12 371 280 37 0 chr6 41802371 41802478 -140612764 - L2 LINE L2 -257 3056 2946 565 267 93 39 chr6 41802621 41803102 -140612140 - L1ME LINE L1 -544 5618 5084 1843 161 0 7 chr6 41803102 41803407 -140611835 - AluJo SINE Alu 0 303 1 565 267 93 39 chr6 41803407 41803578 -140611664 - L1ME LINE L1 -1078 5084 4924 2262 95 0 0 chr6 41803975 41804285 -140610957 - AluSx SINE Alu 0 310 1 444 86 0 0 chr6 41804755 41804825 -140610417 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 1104 244 55 4 chr6 41805253 41805524 -140609718 - MLT1J LTR MaLR -226 285 1 1846 181 0 0 chr6 41805608 41805907 -140609335 + AluJo SINE Alu 1 299 -13 272 299 0 0 chr6 41806454 41806521 -140608721 - MIR3 SINE MIR -43 165 99 630 299 147 14 chr6 41806838 41807186 -140608056 - L2 LINE L2 -52 3261 2868 195 303 59 34 chr6 41807603 41807722 -140607520 + MIR3 SINE MIR 33 154 -54 235 250 0 0 chr6 41807774 41807830 -140607412 + L2 LINE L2 3255 3310 -3 2348 101 0 0 chr6 41807952 41808249 -140606993 + AluSc SINE Alu 1 297 -12 346 299 13 45 chr6 41808297 41808451 -140606791 - L1MEd LINE L1 -5422 697 549 265 285 118 27 chr6 41808691 41808807 -140606435 - L1MEd LINE L1 -5914 205 64 1858 175 0 10 chr6 41808807 41809116 -140606126 - AluJo SINE Alu -3 309 4 265 285 118 27 chr6 41809116 41809185 -140606057 - L1MEd LINE L1 -6055 64 3 202 200 0 0 chr6 41809238 41809278 -140605964 + (TG)n Simple_repeat Simple_repeat 2 41 0 751 294 30 0 chr6 41809434 41809631 -140605611 - MIR SINE MIR -3 259 57 2186 102 0 11 chr6 41809764 41810047 -140605195 + AluSq SINE Alu 1 280 -33 1039 114 0 16 chr6 41810047 41810302 -140604940 + (GAAA)n Simple_repeat Simple_repeat 1 250 0 2260 102 3 0 chr6 41810724 41811009 -140604233 - AluSg SINE Alu -24 286 1 1419 160 16 0 chr6 41811036 41811292 -140603950 - L1MD3 LINE L1 -6 7989 7730 838 158 15 15 chr6 41811542 41811675 -140603567 + FLAM_A SINE Alu 1 133 0 687 54 0 0 chr6 41812539 41812631 -140602611 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 426 319 0 0 chr6 41813679 41813773 -140601469 - L2 LINE L2 -17 3255 3162 517 313 133 0 chr6 41814112 41814323 -140600919 - MIR SINE MIR -4 258 20 1258 164 15 0 chr6 41814362 41814563 -140600679 + AluJo SINE Alu 1 204 -108 288 71 0 0 chr6 41814564 41814606 -140600636 + FLAM_A SINE Alu 86 127 -6 1916 146 0 32 chr6 41814703 41815011 -140600231 - AluJo SINE Alu -13 299 2 212 158 18 0 chr6 41815697 41815754 -140599488 + GA-rich Low_complexity Low_complexity 1 58 0 360 0 0 0 chr6 41815782 41815822 -140599420 + (CA)n Simple_repeat Simple_repeat 2 41 0 559 34 47 113 chr6 41816131 41816358 -140598884 + L1ME4a LINE L1 5593 5778 -343 1551 181 34 34 chr6 41816358 41816470 -140598772 + AluJo SINE Alu 1 112 -200 2828 13 0 19 chr6 41816470 41816784 -140598458 - AluYb8 SINE Alu -10 308 1 1551 181 34 34 chr6 41816784 41816963 -140598279 + AluJo SINE Alu 111 292 -20 559 34 47 113 chr6 41816963 41817084 -140598158 + L1ME4a LINE L1 5778 5905 -216 346 247 0 0 chr6 41817747 41817820 -140597422 + MIR SINE MIR 71 143 -119 341 252 3 0 chr6 41817902 41817985 -140597257 + MIR SINE MIR 57 140 -68 568 260 87 25 chr6 41818038 41818234 -140597008 - L3 LINE CR1 -3 1574 1367 698 251 26 36 chr6 41818400 41818595 -140596647 + MIR SINE MIR 7 199 -63 185 343 130 20 chr6 41819093 41819239 -140596003 + MIR3 SINE MIR 39 200 -8 244 340 68 12 chr6 41820800 41820962 -140594280 - MIR3 SINE MIR -6 202 32 389 291 155 0 chr6 41821516 41821664 -140593578 - MER5A DNA MER1_type -10 179 9 180 276 0 69 chr6 41821668 41821726 -140593516 - MIR3 SINE MIR -44 164 111 339 340 10 0 chr6 41822554 41822657 -140592585 + MIR SINE MIR 47 150 -112 1155 161 0 33 chr6 41822719 41822930 -140592312 + MER58C DNA MER1_type 1 204 -11 467 232 179 13 chr6 41822939 41823090 -140592152 - MIR SINE MIR -67 195 20 1405 190 137 4 chr6 41824055 41824318 -140590924 + AluJb SINE Alu 1 298 -4 297 318 106 6 chr6 41824384 41824563 -140590679 - L1ME4a LINE L1 -241 5880 5684 407 205 66 114 chr6 41824723 41824889 -140590353 + MIR3 SINE MIR 3 160 -48 * 580 247 126 11 chr6 41824879 41825053 -140590189 + MIR SINE MIR 50 243 -19 216 0 0 0 chr6 41825892 41825916 -140589326 + (CA)n Simple_repeat Simple_repeat 2 25 0 1726 171 55 102 chr6 41825919 41826427 -140588815 - L1ME1 LINE L1 -88 6078 5595 3129 187 92 41 chr6 41826442 41826768 -140588474 - L1MB2 LINE L1 -3 6168 5860 2281 98 0 3 chr6 41826768 41827063 -140588179 - AluSc SINE Alu -15 294 1 3129 187 92 41 chr6 41827063 41827350 -140587892 - L1MB2 LINE L1 -311 5860 5589 2642 65 0 0 chr6 41827350 41827660 -140587582 - AluY SINE Alu -1 310 1 3129 187 92 41 chr6 41827660 41827856 -140587386 - L1MB2 LINE L1 -582 5589 5316 2766 151 105 129 chr6 41827867 41828205 -140587037 - L1MC3 LINE L1 -8 7777 7432 354 23 0 0 chr6 41828205 41828248 -140586994 + (GA)n Simple_repeat Simple_repeat 1 43 0 2112 72 0 0 chr6 41828248 41828498 -140586744 - AluY SINE Alu -39 272 23 2766 151 105 129 chr6 41828498 41828792 -140586450 - L1MC3 LINE L1 -352 7433 7102 266 299 0 0 chr6 41828792 41828859 -140586383 - MLT1F1 LTR MaLR -456 111 45 2766 151 105 129 chr6 41828859 41829063 -140586179 - L1MC3 LINE L1 -683 7102 6895 645 204 0 0 chr6 41829160 41829263 -140585979 - AluJb SINE Alu -25 287 185 307 273 162 56 chr6 41829279 41829756 -140585486 + L2 LINE L2 2683 3204 -68 853 185 33 5 chr6 41830694 41830878 -140584364 + MER5A DNA MER1_type 1 189 0 587 226 241 34 chr6 41830917 41831129 -140584113 + MER5C DNA MER1_type 3 282 -42 2410 79 3 0 chr6 41831129 41831419 -140583823 - AluY SINE Alu -20 291 1 587 226 241 34 chr6 41831419 41831471 -140583771 + MER5C DNA MER1_type 282 322 -2 2131 135 0 0 chr6 41831576 41831864 -140583378 + AluSq SINE Alu 1 288 -25 2027 114 0 4 chr6 41832406 41832678 -140582564 + AluSx SINE Alu 37 307 -5 549 229 181 21 chr6 41832859 41833047 -140582195 + MER20 DNA MER1_type 2 219 0 1124 108 142 15 chr6 41833125 41833329 -140581913 - MER30 DNA MER1_type 0 230 1 1611 185 50 3 chr6 41833783 41834081 -140581161 - AluSx SINE Alu 0 312 1 244 210 116 127 chr6 41834995 41835176 -140580066 + LTR33 LTR ERVL 87 265 -256 189 211 18 70 chr6 41835459 41835516 -140579726 + MER5B DNA MER1_type 123 176 -2 413 330 98 9 chr6 41835857 41836072 -140579170 + MIR SINE MIR 28 261 -1 2247 126 0 0 chr6 41836121 41836423 -140578819 + AluSq SINE Alu 1 302 -11 254 276 11 35 chr6 41836532 41836619 -140578623 - L2 LINE L2 -1 3312 3228 590 168 0 0 chr6 41836875 41836976 -140578266 + FLAM_A SINE Alu 1 101 -41 298 180 9 90 chr6 41838093 41838204 -140577038 - MLT1I LTR MaLR 0 409 308 483 209 0 0 chr6 41838640 41838731 -140576511 - MIR SINE MIR -143 119 29 686 169 52 0 chr6 41839085 41839221 -140576021 + MER5A DNA MER1_type 47 189 0 229 226 214 88 chr6 41839236 41839395 -140575847 - L2 LINE L2 -182 3090 2912 269 324 54 9 chr6 41839660 41839771 -140575471 - MIR3 SINE MIR -90 118 3 380 245 41 10 chr6 41840020 41840118 -140575124 - MER91B DNA MER1_type 0 190 90 252 217 54 139 chr6 41840135 41840264 -140574978 - MER91B DNA MER1_type -60 130 13 806 133 139 0 chr6 41842044 41842210 -140573032 - MER53 DNA DNA 0 189 1 423 232 45 9 chr6 41842727 41842839 -140572403 + L2 LINE L2 3197 3312 -1 388 273 9 2 chr6 41842864 41843010 -140572232 + MIR SINE MIR 20 165 -62 1670 49 5 13 chr6 41843155 41843379 -140571863 - L1PA3 LINE L1 0 6155 5934 279 240 80 20 chr6 41843511 41843611 -140571631 - MIR SINE MIR -73 135 30 689 226 11 55 chr6 41844415 41844596 -140570646 - MER91B DNA MER1_type -15 175 3 209 291 29 58 chr6 41845063 41845166 -140570076 - MIR SINE MIR -84 124 25 252 0 0 0 chr6 41845833 41845861 -140569381 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 313 307 102 7 chr6 41846109 41846246 -140568996 - MARNA DNA Mariner -345 241 92 1886 141 0 49 chr6 41846452 41846758 -140568484 + AluJb SINE Alu 1 291 -21 227 222 19 0 chr6 41847213 41847267 -140567975 - L2 LINE L2 -251 3062 3008 952 276 157 11 chr6 41848200 41848570 -140566672 - LTR16C LTR ERVL -10 481 58 381 243 99 9 chr6 41849022 41849133 -140566109 - MIR SINE MIR -59 149 44 1263 95 0 12 chr6 41849741 41849910 -140565332 - AluSg/x SINE Alu -19 293 127 455 254 97 0 chr6 41849929 41850043 -140565199 - MER63 DNA MER1_type -311 751 1 415 255 38 0 chr6 41850761 41850867 -140564375 + MIR SINE MIR 99 208 -54 182 224 0 41 chr6 41850976 41851025 -140564217 + MER5A DNA MER1_type 122 168 -21 2249 122 0 0 chr6 41851746 41852042 -140563200 + AluSx SINE Alu 3 298 -14 657 0 0 0 chr6 41852602 41852675 -140562567 + (TA)n Simple_repeat Simple_repeat 2 74 0 513 239 37 0 chr6 41852880 41853014 -140562228 - MIR SINE MIR -77 185 47 409 328 52 0 chr6 41853925 41854059 -140561183 + MIR SINE MIR 54 194 -68 256 211 254 35 chr6 41854118 41854232 -140561010 - MIR3 SINE MIR -63 145 7 348 236 18 73 chr6 41855419 41855529 -140559713 + MIR SINE MIR 79 182 -80 374 227 191 0 chr6 41856115 41856256 -140558986 + L1MC4 LINE L1 7786 7953 -89 23 33 0 0 chr6 41856336 41856366 -140558876 + AT_rich Low_complexity Low_complexity 1 30 0 287 267 104 52 chr6 41857078 41857213 -140558029 - MIR3 SINE MIR -22 186 45 310 296 17 26 chr6 41857380 41857495 -140557747 - MIR SINE MIR -90 172 59 2073 121 17 3 chr6 41857555 41857853 -140557389 + AluSx SINE Alu 1 302 -10 519 174 16 8 chr6 41857866 41857987 -140557255 + GA-rich Low_complexity Low_complexity 4 125 0 2344 89 0 0 chr6 41858748 41859090 -140556152 - AluSx SINE Alu 0 342 1 228 299 104 0 chr6 41859249 41859326 -140555916 - MIR SINE MIR -110 152 68 705 247 31 0 chr6 41859326 41859488 -140555754 + MLT1D LTR MaLR 339 505 0 217 326 21 0 chr6 41859488 41859583 -140555659 + MIR SINE MIR 46 142 -120 364 238 12 0 chr6 41859630 41859710 -140555532 + L2 LINE L2 2402 2482 -832 22 0 0 0 chr6 41859710 41859732 -140555510 + AT_rich Low_complexity Low_complexity 1 22 0 708 135 0 9 chr6 41859737 41859848 -140555394 - FLAM_C SINE Alu -25 118 9 707 272 206 22 chr6 41859852 41860572 -140554670 + L2 LINE L2 2468 3313 0 321 294 47 0 chr6 41861561 41861646 -140553596 - L2 LINE L2 -16 3256 3168 261 302 47 0 chr6 41863774 41863880 -140551362 - MIR3 SINE MIR -83 125 15 365 269 68 8 chr6 41864366 41864492 -140550750 - MIR SINE MIR -62 146 32 2536 96 0 0 chr6 41865557 41865869 -140549373 + AluSx SINE Alu 1 312 0 196 333 171 0 chr6 41865973 41866090 -140549152 + MIR SINE MIR 71 207 -55 738 127 6 30 chr6 41866091 41866100 -140549142 + (GGAA)n Simple_repeat Simple_repeat 3 11 -153 2178 152 0 3 chr6 41866100 41866410 -140548832 + AluJo SINE Alu 1 309 -3 738 127 6 30 chr6 41866410 41866566 -140548676 + (GGAA)n Simple_repeat Simple_repeat 11 164 0 197 91 30 0 chr6 41866603 41866636 -140548606 + MIR SINE MIR 215 248 -14 181 283 33 0 chr6 41866675 41866735 -140548507 - L2 LINE L2 -1 3271 3210 268 137 59 0 chr6 41866975 41867026 -140548216 + L1MB3 LINE L1 5994 6047 -136 589 153 23 30 chr6 41867116 41867247 -140547995 + L1MB3 LINE L1 6054 6183 0 630 236 29 6 chr6 41867502 41867676 -140547566 - MER45A DNA AcHobo 0 178 1 696 223 125 2 chr6 41867751 41868022 -140547220 - L1ME3A LINE L1 -1 6169 5838 1217 243 12 31 chr6 41868033 41868358 -140546884 + L1ME LINE L1 5480 5798 -372 201 264 102 3 chr6 41869263 41869336 -140545906 - MIR SINE MIR -64 144 90 2141 108 34 3 chr6 41869336 41869631 -140545611 + AluSx SINE Alu 1 304 -8 201 264 102 3 chr6 41869631 41869659 -140545583 - MIR SINE MIR -118 90 66 639 233 0 0 chr6 41869676 41869809 -140545433 + FLAM_A SINE Alu 1 133 0 299 327 39 0 chr6 41869844 41869948 -140545294 + MIR SINE MIR 112 219 -43 1061 153 77 29 chr6 41870206 41870415 -140544827 - MER20 DNA MER1_type 0 219 1 357 295 72 30 chr6 41870415 41870752 -140544490 - MLT1L LTR MaLR -54 561 168 212 320 128 16 chr6 41870839 41870964 -140544278 + L2 LINE L2 3121 3259 -13 189 0 0 0 chr6 41870964 41870985 -140544257 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 421 273 45 87 chr6 41871131 41871373 -140543869 + L2 LINE L2 2896 3127 -145 1631 176 20 10 chr6 41871469 41871771 -140543471 - MER58B DNA MER1_type 0 341 37 2182 130 0 3 chr6 41871987 41872287 -140542955 + AluSx SINE Alu 1 299 -13 1625 65 23 0 chr6 41872484 41872701 -140542541 + MLT2A1 LTR ERVL 223 444 0 1960 118 29 11 chr6 41872789 41873107 -140542135 - AluSg SINE Alu 0 327 5 402 272 25 54 chr6 41873139 41873320 -140541922 + L1ME LINE L1 5497 5669 -501 2117 96 26 61 chr6 41873320 41873632 -140541610 + AluSx SINE Alu 1 301 -11 2682 159 6 26 chr6 41874127 41874618 -140540624 + MER66B LTR ERV1 6 486 0 1172 242 65 45 chr6 41874795 41875253 -140539989 + MLT1C LTR MaLR 3 467 0 1566 130 74 46 chr6 41876173 41876313 -140538929 - AluJb SINE Alu -20 292 157 2272 92 3 7 chr6 41876313 41876608 -140538634 - AluSc SINE Alu -15 294 1 1566 130 74 46 chr6 41876608 41876751 -140538491 - AluJb SINE Alu -155 157 1 577 344 105 10 chr6 41877501 41877902 -140537340 - L1MC4a LINE L1 -1959 5849 5411 246 128 0 0 chr6 41877903 41877942 -140537300 + (TC)n Simple_repeat Simple_repeat 1 39 0 956 131 0 0 chr6 41877942 41878079 -140537163 - FLAM_C SINE Alu 0 143 7 488 318 88 12 chr6 41879766 41879936 -140535306 - MIR SINE MIR -75 187 5 4441 179 44 27 chr6 41880032 41880088 -140535154 - L1MB7 LINE L1 0 6184 6130 1857 143 4 4 chr6 41880088 41880361 -140534881 - AluSx SINE Alu -39 273 1 4441 179 44 27 chr6 41880361 41881040 -140534202 - L1MB7 LINE L1 -54 6130 5464 3630 137 16 0 chr6 41881040 41881588 -140533654 - MER41D LTR ERV1 0 557 1 4441 179 44 27 chr6 41881588 41881653 -140533589 - L1MB7 LINE L1 -720 5464 5402 2386 103 8 48 chr6 41881653 41882032 -140533210 + THE1B LTR MaLR 1 364 0 4441 179 44 27 chr6 41882032 41883412 -140531830 - L1MB7 LINE L1 -782 5402 3847 2110 104 0 66 chr6 41883422 41883739 -140531503 - AluSx SINE Alu -16 296 1 814 157 0 127 chr6 41884179 41884376 -140530866 + FRAM SINE Alu 1 172 -4 388 282 136 23 chr6 41884610 41884830 -140530412 - MLT1K LTR MaLR -324 264 20 715 238 142 11 chr6 41885218 41885500 -140529742 - LTR33 LTR ERVL -169 352 34 598 280 127 26 chr6 41885560 41885621 -140529621 + MLT1J1 LTR MaLR 109 162 -284 2232 135 0 3 chr6 41885621 41885933 -140529309 + AluSx SINE Alu 1 311 -1 598 280 127 26 chr6 41885933 41886178 -140529064 + MLT1J1 LTR MaLR 162 446 0 2475 102 0 0 chr6 41887195 41887508 -140527734 + AluSp SINE Alu 1 313 0 389 244 321 6 chr6 41887618 41887786 -140527456 + L2 LINE L2 3093 3313 0 204 286 0 0 chr6 41887844 41887893 -140527349 - MIR SINE MIR -61 147 99 2407 69 14 0 chr6 41887926 41888217 -140527025 - AluSc SINE Alu -14 295 1 350 145 32 0 chr6 41888523 41888585 -140526657 + L3 LINE CR1 1424 1487 -90 1948 103 48 38 chr6 41889907 41890043 -140525199 + AluSq SINE Alu 1 134 -179 2427 67 0 13 chr6 41890043 41890341 -140524901 + AluY SINE Alu 1 294 -17 1948 103 48 38 chr6 41890341 41890494 -140524748 + AluSq SINE Alu 134 293 -20 260 298 0 0 chr6 41890579 41890636 -140524606 + L2 LINE L2 3207 3263 -9 371 242 53 0 chr6 41891030 41891125 -140524117 + MIR3 SINE MIR 81 180 -28 7185 135 95 72 chr6 41891164 41892824 -140522418 - pTR5 LTR ERV1 0 2438 741 457 240 3 37 chr6 41893419 41893579 -140521663 - MIR SINE MIR -49 213 60 288 247 0 27 chr6 41893842 41893915 -140521327 + MIR SINE MIR 181 251 -11 2160 113 7 7 chr6 41893916 41894218 -140521024 + AluSx SINE Alu 1 302 -10 222 105 0 26 chr6 41894302 41894340 -140520902 - MIR SINE MIR -118 144 108 2179 129 0 0 chr6 41895187 41895482 -140519760 + AluSx SINE Alu 1 295 -17 293 47 23 0 chr6 41895482 41895525 -140519717 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 661 260 62 31 chr6 41895786 41895978 -140519264 + MIR SINE MIR 53 250 -12 678 232 77 53 chr6 41896083 41896290 -140518952 + MIR SINE MIR 17 228 -34 327 304 204 16 chr6 41897612 41897803 -140517439 + MIR SINE MIR 35 261 -1 812 134 8 0 chr6 41897827 41897946 -140517296 + FRAM SINE Alu 42 161 -15 954 115 0 0 chr6 41897969 41898108 -140517134 - L1MA4A LINE L1 -5 6298 6160 1006 111 53 102 chr6 41898195 41898280 -140516962 + L1PA16 LINE L1 5952 6040 -126 1998 92 14 11 chr6 41898280 41898589 -140516653 + AluSq SINE Alu 1 310 0 1006 111 53 102 chr6 41898589 41898727 -140516515 + L1PA16 LINE L1 6040 6165 -1 1043 186 104 5 chr6 41898834 41899055 -140516187 + MIR SINE MIR 3 245 -17 239 279 38 25 chr6 41899832 41899911 -140515331 - MIR3 SINE MIR -117 91 12 * 2314 247 148 29 chr6 41899897 41901308 -140513934 - L2 LINE L2 -1 3312 1726 501 321 44 0 chr6 41901802 41901961 -140513281 - MER91A DNA MER1_type -30 166 1 1941 161 3 0 chr6 41902102 41902394 -140512848 + AluJo SINE Alu 1 293 -19 2345 103 3 0 chr6 41902814 41903114 -140512128 + AluSx SINE Alu 1 301 -11 366 136 15 30 chr6 41904339 41904405 -140510837 - L2 LINE L2 -2 3311 3247 370 224 0 26 chr6 41904407 41904483 -140510759 + L2 LINE L2 3236 3309 -4 299 260 32 81 chr6 41904496 41904522 -140510720 - MIR SINE MIR -86 176 150 2335 100 0 3 chr6 41904522 41904823 -140510419 + AluSc SINE Alu 1 300 -9 299 260 32 81 chr6 41904823 41904919 -140510323 - MIR SINE MIR -112 150 60 364 104 122 165 chr6 41905137 41905207 -140510035 + ORSL DNA AcHobo 1 66 -209 1939 125 24 24 chr6 41905207 41905494 -140509748 + AluJb SINE Alu 3 289 -23 364 104 122 165 chr6 41905494 41905538 -140509704 + ORSL DNA AcHobo 66 110 -165 237 292 204 0 chr6 41905538 41905651 -140509591 - MIR3 SINE MIR -38 170 35 352 241 35 0 chr6 41905724 41905811 -140509431 - L2 LINE L2 -1 3271 3182 231 258 0 62 chr6 41906280 41906377 -140508865 + L1MC4a LINE L1 4922 5012 -1134 333 307 75 42 chr6 41906449 41906661 -140508581 + L1MC4a LINE L1 5091 5309 -837 1047 174 70 42 chr6 41906686 41906899 -140508343 - MER20 DNA MER1_type 0 219 1 1656 170 13 31 chr6 41907286 41907604 -140507638 + AluJo SINE Alu 1 312 0 2299 119 0 0 chr6 41907622 41907925 -140507317 + AluSg SINE Alu 1 303 -7 284 302 63 56 chr6 41907994 41908120 -140507122 + MIR SINE MIR 115 241 -21 184 313 0 0 chr6 41908148 41908196 -140507046 + MIR SINE MIR 187 234 -28 631 242 7 26 chr6 41908683 41908836 -140506406 + L2 LINE L2 3164 3313 0 472 347 33 9 chr6 41909311 41909524 -140505718 + MIR SINE MIR 45 262 0 385 265 223 42 chr6 41909759 41909925 -140505317 + MER91A DNA MER1_type 1 196 0 502 258 104 14 chr6 41910177 41910398 -140504844 + MER112 DNA MER1_type 8 248 -12 667 231 125 12 chr6 41910403 41910563 -140504679 + MER5A DNA MER1_type 12 189 0 283 277 142 26 chr6 41910915 41911070 -140504172 + MIR3 SINE MIR 21 193 -15 239 299 52 0 chr6 41912130 41912227 -140503015 + LTR16C LTR ERVL 323 424 -67 290 320 40 8 chr6 41912311 41912436 -140502806 + L3 LINE CR1 1393 1521 -56 2160 120 7 3 chr6 41912634 41912933 -140502309 + AluSg SINE Alu 1 300 -10 230 139 0 89 chr6 41912995 41913074 -140502168 - L1MA7 LINE L1 -4 6287 6216 854 145 0 23 chr6 41913077 41913208 -140502034 + FLAM_C SINE Alu 1 128 -5 1592 174 37 37 chr6 41913220 41913518 -140501724 + AluJo SINE Alu 1 298 -14 2156 131 0 25 chr6 41914072 41914392 -140500850 + AluSx SINE Alu 1 312 0 189 0 0 0 chr6 41915860 41915881 -140499361 + (CAGGG)n Simple_repeat Simple_repeat 5 25 0 848 257 166 47 chr6 41916553 41916672 -140498570 + L1MC4a LINE L1 5284 5387 -2421 1755 151 0 7 chr6 41916672 41916943 -140498299 + AluJb SINE Alu 5 273 -39 848 257 166 47 chr6 41916943 41917274 -140497968 + L1MC4a LINE L1 5387 5788 -2020 1042 178 11 0 chr6 41917283 41917468 -140497774 - AluJo SINE Alu 0 312 126 812 224 25 95 chr6 41917539 41917780 -140497462 + MIR SINE MIR 2 225 -37 293 214 0 0 chr6 41917789 41917845 -140497397 + L1MC4a LINE L1 5869 5924 -1884 267 152 0 0 chr6 41917849 41917895 -140497347 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2483 78 0 0 chr6 41918016 41918312 -140496930 - AluSc SINE Alu -13 296 1 25 65 0 0 chr6 41918587 41918633 -140496609 + AT_rich Low_complexity Low_complexity 1 46 0 867 181 0 14 chr6 41920134 41920278 -140494964 - AluJo SINE Alu -92 220 79 1865 165 28 0 chr6 41920413 41920704 -140494538 + AluJb SINE Alu 1 299 -13 1340 243 84 40 chr6 41920826 41921003 -140494239 + L2 LINE L2 2642 2810 -503 2306 76 31 10 chr6 41921003 41921292 -140493950 - AluSp SINE Alu -18 295 1 1340 243 84 40 chr6 41921292 41921489 -140493753 + L2 LINE L2 2810 2997 -316 1811 141 32 0 chr6 41921489 41921766 -140493476 + AluSx SINE Alu 11 296 -16 1340 243 84 40 chr6 41921766 41922032 -140493210 + L2 LINE L2 2997 3313 0 567 290 89 23 chr6 41922169 41922407 -140492835 + MIR SINE MIR 5 256 -6 395 222 131 40 chr6 41922454 41922652 -140492590 - LTR33 LTR ERVL -2 519 304 1643 99 59 136 chr6 41922828 41923151 -140492091 - AluJo SINE Alu -14 298 1 1301 85 40 11 chr6 41923520 41923696 -140491546 - AluJb SINE Alu -3 309 129 1910 149 17 10 chr6 41923744 41924046 -140491196 + AluJb SINE Alu 1 304 -8 439 247 0 0 chr6 41924140 41924237 -140491005 + L1MB7 LINE L1 4778 4874 -1272 4975 116 29 74 chr6 41924237 41925275 -140489967 + MER52C LTR ERV1 1 1278 0 1286 186 97 46 chr6 41925275 41925322 -140489920 + L1MB7 LINE L1 4871 4914 -1232 754 212 0 0 chr6 41925322 41925454 -140489788 + FLAM_A SINE Alu 2 133 0 1286 186 97 46 chr6 41925454 41925798 -140489444 + L1MB7 LINE L1 4914 5282 -864 1422 142 47 63 chr6 41925798 41926051 -140489191 + AluJo SINE Alu 44 292 -20 3676 141 34 6 chr6 41926059 41926727 -140488515 + L1MB7 LINE L1 5289 5975 -209 994 246 133 18 chr6 41926731 41927069 -140488173 + L2 LINE L2 2932 3308 -5 214 102 0 41 chr6 41927113 41927162 -140488080 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 2231 129 0 3 chr6 41927164 41927473 -140487769 - AluSx SINE Alu -4 308 1 735 249 6 0 chr6 41927949 41928114 -140487128 + MER5B DNA MER1_type 5 170 -8 438 317 96 12 chr6 41928123 41928290 -140486952 - MER5A DNA MER1_type 0 189 9 2267 122 0 3 chr6 41928713 41929008 -140486234 + AluSq SINE Alu 1 294 -19 1472 162 67 27 chr6 41929069 41929378 -140485864 - Charlie5 DNA MER1_type 0 2624 2296 1622 177 71 7 chr6 41929378 41929660 -140485582 + AluJb SINE Alu 1 300 -12 1472 162 67 27 chr6 41929660 41929726 -140485516 - Charlie5 DNA MER1_type -328 2296 2234 739 120 16 0 chr6 41929723 41929848 -140485394 - Charlie5 DNA MER1_type -2485 127 1 * 249 192 50 0 chr6 41929887 41930007 -140485235 + (TA)n Simple_repeat Simple_repeat 1 126 0 624 215 0 52 chr6 41930007 41930142 -140485100 - FLAM_C SINE Alu -14 129 2 199 296 80 23 chr6 41930206 41930294 -140484948 - L2 LINE L2 -11 3302 3210 197 305 70 94 chr6 41930473 41930729 -140484513 - L2 LINE L2 -108 3164 2915 399 258 22 0 chr6 41930859 41930948 -140484294 + MER5B DNA MER1_type 39 129 -49 249 139 0 0 chr6 41930949 41930992 -140484250 + (T)n Simple_repeat Simple_repeat 1 43 0 1096 132 7 0 chr6 41931033 41931185 -140484057 - AluSx SINE Alu -159 153 1 275 151 0 19 chr6 41931185 41931238 -140484004 + MER5B DNA MER1_type 121 172 -6 * 422 263 35 18 chr6 41931232 41931346 -140483896 - MIR SINE MIR -131 131 16 1799 164 24 3 chr6 41931618 41931910 -140483332 + AluJb SINE Alu 1 298 -14 5892 107 65 102 chr6 41932273 41932702 -140482540 + Tigger3b DNA MER2_type 1 444 -2584 2209 114 3 0 chr6 41932702 41932999 -140482243 + AluSx SINE Alu 1 298 -14 5892 107 65 102 chr6 41932999 41933404 -140481838 + Tigger3b DNA MER2_type 444 774 -2254 1590 101 14 9 chr6 41933404 41933623 -140481619 - AluSq SINE Alu -12 301 82 5892 107 65 102 chr6 41933623 41934064 -140481178 + Tigger3b DNA MER2_type 774 1230 -1 229 174 0 22 chr6 41934240 41934286 -140480956 + MLT1K LTR MaLR 188 232 -356 2384 101 0 0 chr6 41934557 41934853 -140480389 + AluSg SINE Alu 1 296 -14 578 120 50 0 chr6 41935603 41935703 -140479539 - FLAM_C SINE Alu -11 132 28 2270 100 3 22 chr6 41935969 41936288 -140478954 - AluSq SINE Alu 0 313 1 1692 132 41 37 chr6 41936288 41936583 -140478659 - AluJb SINE Alu -14 298 3 1418 150 29 70 chr6 41936641 41936914 -140478328 + AluJb SINE Alu 32 293 -19 1854 157 4 4 chr6 41937570 41937851 -140477391 + AluJo SINE Alu 1 281 -31 850 170 6 16 chr6 41937851 41938033 -140477209 + GA-rich Low_complexity Low_complexity 1 180 0 585 107 0 0 chr6 41938071 41938155 -140477087 + AluS SINE Alu 5 88 -225 204 40 0 0 chr6 41938171 41938196 -140477046 + (GA)n Simple_repeat Simple_repeat 1 25 0 2159 92 35 0 chr6 41938196 41938480 -140476762 + AluSp SINE Alu 2 295 -18 553 158 5 63 chr6 41938481 41938671 -140476571 + GA-rich Low_complexity Low_complexity 2 180 0 755 206 87 79 chr6 41938888 41939029 -140476213 + MIR SINE MIR 9 147 -115 492 213 119 31 chr6 41939029 41939189 -140476053 + MER104 DNA MER2_type 4 177 -3 2413 86 0 7 chr6 41939193 41939495 -140475747 + AluSq SINE Alu 1 300 -13 755 206 87 79 chr6 41939495 41939600 -140475642 + MIR SINE MIR 149 262 0 1637 167 11 24 chr6 41939696 41939983 -140475259 + AluJb SINE Alu 11 293 -19 2533 81 0 0 chr6 41940096 41940404 -140474838 + AluSx SINE Alu 1 308 -4 2377 89 0 0 chr6 41940406 41940698 -140474544 + AluSc SINE Alu 1 292 -17 614 143 0 0 chr6 41940702 41940786 -140474456 - AluJ/FLAM SINE Alu -227 85 2 1239 265 113 72 chr6 41940794 41941163 -140474079 + HAL1 LINE L1 982 1334 -1173 2424 79 3 0 chr6 41941163 41941466 -140473776 + AluY SINE Alu 1 304 -7 1239 265 113 72 chr6 41941466 41941741 -140473501 + HAL1 LINE L1 1334 1596 -911 1796 174 0 13 chr6 41941741 41942052 -140473190 + AluJo SINE Alu 1 307 -5 1239 265 113 72 chr6 41942052 41942460 -140472782 + HAL1 LINE L1 1596 2078 -429 2232 114 0 3 chr6 41943187 41943474 -140471768 + AluSx SINE Alu 1 288 -24 201 39 0 0 chr6 41943474 41943500 -140471742 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2232 114 0 3 chr6 41943500 41943511 -140471731 + AluSx SINE Alu 288 298 -14 224 389 109 5 chr6 41943617 41944049 -140471193 - L2 LINE L2 -1499 1815 1339 1752 144 35 35 chr6 41944079 41944202 -140471040 + AluJo SINE Alu 1 123 -189 216 0 0 0 chr6 41944202 41944226 -140471016 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1752 144 35 35 chr6 41944226 41944414 -140470828 + AluJo SINE Alu 122 312 0 347 261 22 0 chr6 41944567 41944659 -140470583 + MIR SINE MIR 51 144 -118 2400 63 3 3 chr6 41945090 41945377 -140469865 + AluSq SINE Alu 1 287 -26 2013 136 0 40 chr6 41945499 41945823 -140469419 + AluJo SINE Alu 1 311 -1 191 250 19 0 chr6 41945882 41945934 -140469308 - MER5B DNA MER1_type -3 175 123 2507 54 3 0 chr6 41945942 41946236 -140469006 + AluY SINE Alu 1 295 -16 285 196 0 0 chr6 41946290 41946341 -140468901 + MER5B DNA MER1_type 126 176 -2 204 40 0 0 chr6 41946447 41946472 -140468770 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 310 295 134 0 chr6 41947588 41947700 -140467542 + L2 LINE L2 3136 3262 -10 1087 274 67 16 chr6 41948121 41948684 -140466558 + L1MC4a LINE L1 5488 5605 -516 23 68 0 0 chr6 41948744 41948788 -140466454 + AT_rich Low_complexity Low_complexity 1 44 0 2368 90 0 7 chr6 41948797 41949097 -140466145 + AluSx SINE Alu 1 298 -14 287 156 0 0 chr6 41949113 41949158 -140466084 + L1MC4 LINE L1 7783 7827 -215 1786 155 30 0 chr6 41949214 41949510 -140465732 + AluJo SINE Alu 1 305 -7 242 279 13 0 chr6 41949516 41949595 -140465647 + L1MD3 LINE L1 7901 7980 -15 680 200 0 0 chr6 41949675 41949790 -140465452 - FLAM_A SINE Alu -22 120 6 183 119 34 17 chr6 41950112 41950171 -140465071 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 587 278 113 63 chr6 41950338 41950673 -140464569 + L2 LINE L2 2920 3271 -1 23 0 0 0 chr6 41951511 41951534 -140463708 + GC_rich Low_complexity Low_complexity 1 23 0 545 177 11 11 chr6 41952181 41952294 -140462948 + L1MB7 LINE L1 6054 6166 0 2538 46 7 0 chr6 41952386 41952690 -140462552 + AluY SINE Alu 1 306 -5 1096 57 43 7 chr6 41952745 41952886 -140462356 + AluSq/x SINE Alu 1 146 -166 485 143 0 0 chr6 41952886 41952956 -140462286 + AluS SINE Alu 221 290 -20 22 0 0 0 chr6 41953504 41953526 -140461716 + AT_rich Low_complexity Low_complexity 1 22 0 2153 112 0 10 chr6 41953529 41953832 -140461410 + AluSx SINE Alu 1 300 -12 216 0 0 0 chr6 41953832 41953856 -140461386 + (TA)n Simple_repeat Simple_repeat 2 25 0 2445 93 3 0 chr6 41954384 41954696 -140460546 - AluSq SINE Alu 0 313 1 2389 78 24 0 chr6 41955032 41955327 -140459915 - AluSg SINE Alu -8 302 1 1755 138 12 43 chr6 41955525 41955852 -140459390 - MER33 DNA MER1_type 0 324 8 1852 91 4 0 chr6 41956191 41956432 -140458810 + AluY SINE Alu 1 242 -69 396 54 0 36 chr6 41956773 41956829 -140458413 - AluSx SINE Alu -7 294 241 1136 118 0 0 chr6 41956829 41956982 -140458260 - AluSx SINE Alu -159 153 1 1813 151 7 24 chr6 41957022 41957313 -140457929 + AluJb SINE Alu 12 297 -15 2357 106 3 0 chr6 41957519 41957831 -140457411 - AluSq SINE Alu 0 313 1 1962 139 0 26 chr6 41957943 41958246 -140456996 + AluSx SINE Alu 1 295 -17 2325 183 112 0 chr6 41958317 41958771 -140456471 + MLT1D LTR MaLR 1 505 0 2148 88 0 76 chr6 41958812 41959142 -140456100 - AluSx SINE Alu -7 305 1 460 298 9 0 chr6 41959360 41959474 -140455768 - L2 LINE L2 -22 3250 3136 1822 171 3 0 chr6 41959511 41959797 -140455445 + AluJb SINE Alu 1 287 -25 2090 119 3 0 chr6 41959817 41960102 -140455140 + AluSx SINE Alu 3 288 -24 348 361 11 31 chr6 41960157 41960348 -140454894 - L2 LINE L2 -190 3082 2896 351 302 30 90 chr6 41960487 41960888 -140454354 + HAL1 LINE L1 159 535 -1972 592 277 65 50 chr6 41961021 41961418 -140453824 + HAL1 LINE L1 748 1150 -1357 2182 102 10 22 chr6 41961564 41961877 -140453365 + AluY SINE Alu 1 309 -2 320 253 90 30 chr6 41961929 41962095 -140453147 + L1MC4 LINE L1 7865 8040 -2 619 139 30 0 chr6 41962121 41962222 -140453020 + FRAM SINE Alu 73 176 0 266 244 130 17 chr6 41962223 41962338 -140452904 + HAL1 LINE L1 1282 1409 -1098 263 190 112 51 chr6 41962315 41962445 -140452797 + L1MC5 LINE L1 7832 8042 0 * 21 0 0 0 chr6 41962459 41962480 -140452762 + AT_rich Low_complexity Low_complexity 1 21 0 413 187 108 101 chr6 41963041 41963180 -140452062 + HAL1 LINE L1 1153 1292 -1215 576 155 198 9 chr6 41963185 41963301 -140451941 + AluJo SINE Alu 2 139 -173 1767 145 22 35 chr6 41963302 41963613 -140451629 + AluJo SINE Alu 1 307 -5 1051 222 164 29 chr6 41963613 41964028 -140451214 + HAL1 LINE L1 1293 1763 -744 28 0 0 0 chr6 41964105 41964133 -140451109 + AT_rich Low_complexity Low_complexity 1 28 0 464 287 156 82 chr6 41964153 41964801 -140450441 - L2 LINE L2 -420 2894 2199 298 246 14 0 chr6 41964833 41964902 -140450340 - L2 LINE L2 -15 3298 3229 812 258 40 57 chr6 41964927 41965030 -140450212 + MER20B DNA MER1_type 2 105 -678 2367 103 0 3 chr6 41965030 41965340 -140449902 + AluSx SINE Alu 1 309 -3 812 258 40 57 chr6 41965340 41965535 -140449707 + MER20B DNA MER1_type 105 295 -488 2478 63 0 10 chr6 41965541 41965842 -140449400 - AluY SINE Alu -13 298 1 2438 70 17 0 chr6 41965847 41966146 -140449096 - AluSx SINE Alu -8 304 1 2452 67 3 0 chr6 41966447 41966747 -140448495 - AluY SINE Alu -9 302 2 2148 70 22 4 chr6 41967035 41967306 -140447936 - AluSx SINE Alu -18 294 19 2103 112 0 3 chr6 41967356 41967643 -140447599 + AluSx SINE Alu 1 286 -26 1445 156 13 0 chr6 41967916 41968140 -140447102 + AluJo SINE Alu 72 298 -14 24 0 0 0 chr6 41968275 41968299 -140446943 + AT_rich Low_complexity Low_complexity 1 24 0 1987 94 36 59 chr6 41968315 41968622 -140446620 + AluY SINE Alu 1 300 -11 809 157 14 7 chr6 41969017 41969157 -140446085 + BC200 scRNA scRNA 7 147 -53 364 251 46 73 chr6 41969377 41969584 -140445658 + MLT1J2 LTR MaLR 13 212 -197 1738 94 0 21 chr6 41970122 41970355 -140444887 - AluSq SINE Alu -85 228 1 27 29 0 0 chr6 41971001 41971035 -140444207 + GC_rich Low_complexity Low_complexity 1 34 0 2440 86 0 0 chr6 41973006 41973309 -140441933 + AluSx SINE Alu 1 303 -9 2509 66 0 3 chr6 41974051 41974354 -140440888 - AluSq SINE Alu -11 302 1 25 0 0 0 chr6 41974363 41974388 -140440854 + AT_rich Low_complexity Low_complexity 1 25 0 752 155 0 61 chr6 41974532 41974680 -140440562 + FLAM_C SINE Alu 2 140 -3 353 299 43 0 chr6 41974970 41975087 -140440155 - MIR SINE MIR -112 150 29 677 228 146 14 chr6 41975132 41975351 -140439891 + MIR SINE MIR 13 260 -2 2077 142 0 7 chr6 41975372 41975682 -140439560 + AluSx SINE Alu 1 308 -4 1753 180 0 0 chr6 41975739 41976022 -140439220 + AluJo SINE Alu 5 287 -25 258 156 0 0 chr6 41976022 41976067 -140439175 + (TA)n Simple_repeat Simple_repeat 1 45 0 1947 126 82 28 chr6 41976553 41976731 -140438511 - MLT1B LTR MaLR 0 390 223 5867 56 0 141 chr6 41976731 41977693 -140437549 - LTR12 LTR ERV1 0 826 1 1947 126 82 28 chr6 41977693 41977878 -140437364 - MLT1B LTR MaLR -167 223 7 2676 58 0 0 chr6 41977909 41978220 -140437022 + AluY SINE Alu 1 311 0 2311 117 0 0 chr6 41978232 41978532 -140436710 + AluSx SINE Alu 1 300 -12 1869 159 10 3 chr6 41978917 41979213 -140436029 - 7SLRNA srpRNA srpRNA 0 320 23 1775 187 3 7 chr6 41979522 41979816 -140435426 - AluJo SINE Alu -19 293 1 2053 145 10 0 chr6 41979840 41980137 -140435105 - AluSx SINE Alu -12 300 1 1898 243 110 17 chr6 41980137 41980563 -140434679 - L1M4 LINE L1 -2270 3876 3491 2204 114 17 0 chr6 41980563 41980862 -140434380 - AluSg SINE Alu -6 304 1 524 172 35 17 chr6 41980870 41980986 -140434256 - L1MB8 LINE L1 -1 6177 6060 1898 243 110 17 chr6 41980986 41981026 -140434216 - L1M4 LINE L1 -2661 3485 3450 2270 103 0 13 chr6 41981026 41981338 -140433904 - AluSx SINE Alu -4 308 1 195 42 0 0 chr6 41981338 41981362 -140433880 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1898 243 110 17 chr6 41981362 41981532 -140433710 - L1M4 LINE L1 -2696 3450 3297 2341 89 16 0 chr6 41981532 41981836 -140433406 - AluSp SINE Alu -4 309 1 1898 243 110 17 chr6 41981836 41982175 -140433067 - L1M4 LINE L1 -2849 3297 2669 608 169 223 0 chr6 41982244 41982374 -140432868 + MER58A DNA MER1_type 39 197 -27 2340 95 0 0 chr6 41982374 41982668 -140432574 - AluSx SINE Alu -18 294 1 1878 125 7 36 chr6 41982668 41982972 -140432270 - AluSx SINE Alu -15 297 3 2224 123 0 0 chr6 41983200 41983509 -140431733 + AluSx SINE Alu 1 309 -3 1464 213 30 65 chr6 41983637 41983669 -140431573 - MLT2C1 LTR ERVL -8 389 357 234 0 0 0 chr6 41983669 41983695 -140431547 + (TG)n Simple_repeat Simple_repeat 2 27 0 1464 213 30 65 chr6 41983695 41984065 -140431177 - MLT2C1 LTR ERVL -40 357 1 770 110 128 0 chr6 41984249 41984358 -140430884 + FLAM_C SINE Alu 1 123 -10 2354 87 0 0 chr6 41984363 41984651 -140430591 - AluSx SINE Alu -22 290 3 959 204 0 12 chr6 41984653 41984825 -140430417 - AluJ SINE Alu -5 307 138 299 266 43 11 chr6 41984865 41984959 -140430283 - AluJo SINE Alu -122 180 84 1217 113 24 66 chr6 41984959 41985172 -140430070 - AluJb SINE Alu -108 204 1 796 158 24 8 chr6 41985172 41985299 -140429943 - AluJ SINE Alu -176 136 8 1477 166 4 24 chr6 41985500 41985753 -140429489 + AluJo SINE Alu 1 248 -64 243 326 136 22 chr6 41985753 41985937 -140429305 + L3 LINE CR1 1146 1350 -227 1109 156 0 38 chr6 41986136 41986322 -140428920 - AluJb SINE Alu -21 291 113 2459 86 0 10 chr6 41986330 41986644 -140428598 + AluSp SINE Alu 1 311 -2 757 86 0 0 chr6 41986751 41986844 -140428398 - AluJ/FLAM SINE Alu -217 95 3 1266 162 4 60 chr6 41986873 41987108 -140428134 + AluJo SINE Alu 1 222 -90 22 35 0 0 chr6 41987147 41987176 -140428066 + AT_rich Low_complexity Low_complexity 1 29 0 2297 88 3 20 chr6 41987187 41987492 -140427750 + AluSx SINE Alu 1 300 -12 243 167 0 0 chr6 41987560 41987602 -140427640 + HsTC2 DNA Tc2 33 74 -1824 2029 121 24 3 chr6 41988479 41988768 -140426474 - AluSq SINE Alu -18 295 1 799 258 95 5 chr6 41989008 41989229 -140426013 + MIR SINE MIR 9 249 -13 314 238 57 57 chr6 41990212 41990334 -140424908 - L1M4 LINE L1 -3774 2372 2251 206 256 13 115 chr6 41990566 41990605 -140424637 + MIR3 SINE MIR 121 150 -58 627 198 77 39 chr6 41990605 41990787 -140424455 + MER5A DNA MER1_type 1 189 0 206 256 13 115 chr6 41990787 41990825 -140424417 + MIR3 SINE MIR 150 190 -18 210 208 0 57 chr6 41990859 41990912 -140424330 + L2 LINE L2 3178 3227 -86 1120 239 119 79 chr6 41991430 41991678 -140423564 + L1MC4a LINE L1 5785 6022 -1786 1475 180 120 27 chr6 41991678 41992012 -140423230 + MLT1A1 LTR MaLR 1 365 0 1120 239 119 79 chr6 41992012 41992386 -140422856 + L1MC4a LINE L1 6022 6432 -1376 933 189 18 6 chr6 41992502 41992671 -140422571 - AluJb SINE Alu -30 282 112 2237 97 0 3 chr6 41993189 41993477 -140421765 + AluSg SINE Alu 11 297 -13 183 42 0 0 chr6 41993541 41993565 -140421677 + (T)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr6 41993913 41993949 -140421293 + AT_rich Low_complexity Low_complexity 1 36 0 2234 97 33 0 chr6 41994226 41994526 -140420716 - AluSx SINE Alu -2 310 1 2062 163 0 0 chr6 41994538 41994845 -140420397 - AluJo SINE Alu -5 307 1 2367 64 7 0 chr6 41995314 41995611 -140419631 - AluY SINE Alu -12 299 1 226 195 26 39 chr6 41995779 41995856 -140419386 + L1M4 LINE L1 5793 5868 -306 22 0 0 0 chr6 41996103 41996125 -140419117 + AT_rich Low_complexity Low_complexity 1 22 0 274 357 45 9 chr6 41998450 41998562 -140416680 + MIR SINE MIR 16 131 -77 1345 150 9 4 chr6 41998567 41998793 -140416449 - AluJb SINE Alu -1 311 85 182 216 52 124 chr6 41998796 41998843 -140416399 + MIR SINE MIR 117 155 -107 2146 120 0 3 chr6 41998843 41999143 -140416099 + AluSx SINE Alu 1 299 -13 182 216 52 124 chr6 41999143 41999192 -140416050 + MIR SINE MIR 155 206 -56 573 257 151 6 chr6 41999247 41999309 -140415933 - MIR SINE MIR 0 262 210 700 156 278 0 chr6 41999309 41999482 -140415760 + MER58A DNA MER1_type 1 221 -3 573 257 151 6 chr6 41999482 41999598 -140415644 - MIR SINE MIR -52 210 58 2559 57 0 0 chr6 41999822 42000123 -140415119 - AluY SINE Alu -10 301 1 415 141 78 0 chr6 42000677 42000741 -140414501 + AluS SINE Alu 2 70 -243 1124 140 6 0 chr6 42000878 42001042 -140414200 - AluSg/x SINE Alu -14 298 134 2420 71 0 7 chr6 42001042 42001337 -140413905 - AluY SINE Alu -18 293 1 2446 84 0 3 chr6 42001466 42001776 -140413466 + AluY SINE Alu 1 309 -2 272 26 0 26 chr6 42002032 42002070 -140413172 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1482 34 0 0 chr6 42002071 42002246 -140412996 - L1PA2 LINE L1 -22 6133 5959 2362 84 0 13 chr6 42003139 42003438 -140411804 + AluSx SINE Alu 1 295 -17 2388 97 0 0 chr6 42004404 42004703 -140410539 - AluSg SINE Alu -11 299 1 1440 60 6 0 chr6 42005447 42005629 -140409613 - AluY SINE Alu -3 308 126 467 67 17 0 chr6 42005737 42005797 -140409445 - Alu SINE Alu -249 62 2 2255 62 41 7 chr6 42005839 42006130 -140409112 + AluY SINE Alu 2 302 -9 2366 96 0 6 chr6 42007794 42008108 -140407134 - AluSx SINE Alu 0 312 1 945 114 0 50 chr6 42008431 42008571 -140406671 - FLAM_A SINE Alu 0 133 1 2053 102 35 3 chr6 42008583 42008866 -140406376 - AluSx SINE Alu -20 292 1 245 302 277 19 chr6 42008883 42009042 -140406200 - MIR SINE MIR -44 218 19 2236 100 0 3 chr6 42010286 42010585 -140404657 + AluSg SINE Alu 1 298 -12 353 247 75 0 chr6 42010585 42010678 -140404564 - L1ME4a LINE L1 -287 5834 5735 2302 116 0 0 chr6 42010678 42010980 -140404262 + AluSx SINE Alu 1 302 -10 1267 105 0 12 chr6 42010981 42011152 -140404090 + AluSg/x SINE Alu 131 299 -11 417 221 55 16 chr6 42011156 42011283 -140403959 - L1ME4a LINE L1 -513 5608 5477 1485 108 5 0 chr6 42011311 42011506 -140403736 - AluSx SINE Alu -96 216 21 1477 204 3 17 chr6 42011539 42011833 -140403409 - AluJo SINE Alu -22 290 1 400 226 41 95 chr6 42011837 42011954 -140403288 - L1ME4a LINE L1 -2311 5497 5398 2091 115 17 0 chr6 42011954 42012249 -140402993 - AluSq SINE Alu -13 300 1 400 226 41 95 chr6 42012249 42012374 -140402868 - L1ME4a LINE L1 -2410 5398 5268 241 269 0 0 chr6 42013234 42013286 -140401956 + AluJ/monomer SINE Alu 1 52 -247 410 93 0 0 chr6 42013288 42013342 -140401900 + AluSp/q SINE Alu 243 296 -17 2395 73 7 0 chr6 42013503 42013806 -140401436 - AluY SINE Alu -6 305 1 1607 179 7 24 chr6 42013925 42014222 -140401020 - AluJo SINE Alu -20 292 1 427 291 141 17 chr6 42014291 42014532 -140400710 - L3 LINE CR1 -148 1429 1159 1015 129 269 0 chr6 42016543 42016729 -140398513 - MER46A DNA MER2_type 0 236 1 2392 83 0 7 chr6 42018267 42018569 -140396673 + AluSx SINE Alu 1 300 -12 1565 155 70 22 chr6 42018580 42018851 -140396391 + AluJb SINE Alu 1 284 -28 21 0 0 0 chr6 42019134 42019155 -140396087 + AT_rich Low_complexity Low_complexity 1 21 0 2201 112 3 7 chr6 42019206 42019502 -140395740 + AluSx SINE Alu 1 295 -17 1886 147 20 7 chr6 42020250 42020549 -140394693 - AluJb SINE Alu -9 303 1 2350 95 0 10 chr6 42021081 42021387 -140393855 - AluSc SINE Alu -6 303 1 423 102 0 0 chr6 42021823 42021882 -140393360 + U2 snRNA snRNA 1 59 -129 2366 87 3 0 chr6 42024058 42024356 -140390886 - AluSc SINE Alu -10 299 1 1964 148 27 0 chr6 42025949 42026246 -140388996 - AluJb SINE Alu -7 305 1 2077 146 3 13 chr6 42026590 42026905 -140388337 - AluJo SINE Alu 0 312 1 201 243 0 0 chr6 42028264 42028301 -140386941 - L2 LINE L2 -19 3253 3217 312 316 91 8 chr6 42028339 42028483 -140386759 - MIR SINE MIR -55 207 54 2584 57 0 0 chr6 42028494 42028794 -140386448 + AluSc SINE Alu 1 300 -9 1749 137 27 20 chr6 42028975 42029267 -140385975 - AluJo SINE Alu -18 294 1 195 182 76 30 chr6 42029362 42029428 -140385814 - MIR SINE MIR -10 252 184 1127 101 0 7 chr6 42029590 42029739 -140385503 - AluSq/x SINE Alu -164 148 1 735 263 96 31 chr6 42029739 42030158 -140385084 - L1ME3 LINE L1 -278 5884 5439 1001 138 0 13 chr6 42030158 42030310 -140384932 - FRAM SINE Alu -15 161 12 429 252 34 37 chr6 42030326 42030568 -140384674 - L1ME3 LINE L1 -730 5432 5193 871 280 107 13 chr6 42030813 42031195 -140384047 - L1ME3 LINE L1 -188 5974 5557 483 276 150 8 chr6 42031197 42031443 -140383799 - L1ME3 LINE L1 -935 5211 4931 243 61 0 0 chr6 42031444 42031477 -140383765 + (TG)n Simple_repeat Simple_repeat 1 33 0 305 339 80 31 chr6 42032484 42032770 -140382472 + L3b LINE CR1 1167 1466 -117 357 159 0 0 chr6 42032913 42032976 -140382266 + A-rich Low_complexity Low_complexity 1 63 0 860 237 24 0 chr6 42033072 42033241 -140382001 + MER5B DNA MER1_type 5 177 -1 1936 164 0 7 chr6 42035945 42036250 -140378992 - AluJb SINE Alu -9 303 1 7240 184 148 34 chr6 42036589 42037377 -140377865 - MER52A LTR ERV1 0 1755 1058 2123 175 100 46 chr6 42037377 42037856 -140377386 + LTR22 LTR ERVK 5 509 0 7240 184 148 34 chr6 42037856 42038642 -140376600 - MER52A LTR ERV1 -697 1058 1 189 281 0 35 chr6 42038924 42038981 -140376261 + MIR SINE MIR 187 241 -21 279 274 108 20 chr6 42039046 42039148 -140376094 - MIR SINE MIR -132 130 20 2304 107 0 7 chr6 42039362 42039670 -140375572 - AluSg1 SINE Alu -3 306 1 2303 122 0 0 chr6 42039791 42040102 -140375140 + AluSx SINE Alu 1 311 -1 281 233 183 62 chr6 42040507 42040675 -140374567 + L1ME4a LINE L1 5839 6046 -75 2337 90 3 3 chr6 42040675 42040974 -140374268 - AluSx SINE Alu -13 299 1 281 233 183 62 chr6 42040974 42041045 -140374197 + L1ME4a LINE L1 6046 6107 -14 2171 123 0 0 chr6 42041047 42041332 -140373910 - AluSg SINE Alu -25 285 1 2406 81 0 10 chr6 42041332 42041630 -140373612 - AluSc SINE Alu -14 295 1 261 224 26 13 chr6 42041642 42041718 -140373524 - L1MA6 LINE L1 -271 6029 5953 1514 182 14 44 chr6 42041744 42041888 -140373354 + AluJo SINE Alu 9 141 -171 2556 60 0 0 chr6 42041888 42042188 -140373054 + AluY SINE Alu 1 300 -11 1514 182 14 44 chr6 42042188 42042339 -140372903 + AluJo SINE Alu 141 295 -17 410 324 7 7 chr6 42042482 42042624 -140372618 - MIR3 SINE MIR -10 198 57 1294 79 0 12 chr6 42042718 42042883 -140372359 + AluSg/x SINE Alu 138 300 -10 342 0 0 0 chr6 42043533 42043571 -140371671 + (CA)n Simple_repeat Simple_repeat 1 38 0 1053 139 0 32 chr6 42046578 42046736 -140368506 - FRAM SINE Alu -23 153 1 1943 153 3 41 chr6 42050205 42050519 -140364723 + 7SLRNA srpRNA srpRNA 1 302 -18 2364 100 7 3 chr6 42050589 42050899 -140364343 + AluSx SINE Alu 1 311 -1 2480 80 3 0 chr6 42051273 42051574 -140363668 - AluSg SINE Alu -8 302 1 1449 65 20 20 chr6 42053062 42053263 -140361979 + L1PA8 LINE L1 5966 6166 -6 1532 170 89 0 chr6 42053886 42054145 -140361097 - AluJb SINE Alu -30 282 1 1040 111 7 0 chr6 42054492 42054627 -140360615 + AluSx SINE Alu 1 136 -177 2173 110 3 13 chr6 42054627 42054926 -140360316 + AluSx SINE Alu 1 296 -16 2338 104 0 0 chr6 42054926 42055223 -140360019 + AluSg SINE Alu 1 297 -13 227 303 0 0 chr6 42055242 42055331 -140359911 + L1MC4 LINE L1 6614 6702 -1340 * 247 191 16 0 chr6 42055312 42055375 -140359867 - L1MC4 LINE L1 -1339 6703 6640 1033 178 0 11 chr6 42055407 42055581 -140359661 + AluSx SINE Alu 123 294 -16 2368 72 0 33 chr6 42055832 42056136 -140359106 + AluY SINE Alu 1 294 -17 231 355 56 28 chr6 42056202 42056416 -140358826 - L2 LINE L2 -520 2794 2575 345 266 73 49 chr6 42057141 42057427 -140357815 + L1MC5 LINE L1 7636 7928 -33 2178 120 0 0 chr6 42057973 42058273 -140356969 + AluSx SINE Alu 1 300 -12 2232 102 0 10 chr6 42058386 42058681 -140356561 - AluSx SINE Alu -20 292 1 2086 141 3 3 chr6 42058692 42059004 -140356238 - AluSx SINE Alu 0 312 1 848 139 48 42 chr6 42060177 42060343 -140354899 + FRAM SINE Alu 1 167 -9 2215 94 20 14 chr6 42060508 42060644 -140354598 + AluSx SINE Alu 1 135 -177 1818 164 44 0 chr6 42060644 42060937 -140354305 + AluSx SINE Alu 1 306 -6 2215 94 20 14 chr6 42060937 42061097 -140354145 + AluSx SINE Alu 135 299 -13 990 172 0 18 chr6 42061163 42061326 -140353916 - FRAM SINE Alu -6 160 1 24 32 0 0 chr6 42061464 42061495 -140353747 + AT_rich Low_complexity Low_complexity 1 31 0 4663 206 49 75 chr6 42062059 42062381 -140352861 + L1ME2 LINE L1 3726 4055 -2109 1696 193 7 13 chr6 42062381 42062686 -140352556 + AluJo SINE Alu 1 303 -9 4663 206 49 75 chr6 42062686 42063184 -140352058 + L1ME2 LINE L1 4055 4564 -1600 2083 107 14 7 chr6 42063184 42063507 -140351735 + AluSq SINE Alu 1 313 0 4663 206 49 75 chr6 42063507 42063610 -140351632 + L1ME2 LINE L1 4564 4668 -1496 2299 108 0 0 chr6 42063610 42063907 -140351335 + AluSc SINE Alu 1 297 -12 4663 206 49 75 chr6 42063907 42064403 -140350839 + L1ME2 LINE L1 4668 5175 -989 707 173 31 0 chr6 42064403 42064530 -140350712 + AluJo/FLAM SINE Alu 1 131 -171 2375 72 3 28 chr6 42064530 42064850 -140350392 - AluSp SINE Alu -1 312 1 4663 206 49 75 chr6 42064850 42065630 -140349612 + L1ME2 LINE L1 5174 5973 -191 2065 141 0 3 chr6 42065630 42065927 -140349315 + AluJb SINE Alu 1 296 -16 4663 206 49 75 chr6 42065927 42066035 -140349207 + L1ME2 LINE L1 5973 5972 -192 2452 84 0 13 chr6 42066035 42066346 -140348896 + AluY SINE Alu 3 309 -2 4663 206 49 75 chr6 42066346 42066521 -140348721 + L1ME2 LINE L1 5971 6149 -15 2163 96 48 3 chr6 42066640 42066932 -140348310 + AluSc SINE Alu 1 305 -4 2215 107 0 0 chr6 42067126 42067415 -140347827 + AluSx SINE Alu 9 297 -15 601 307 49 8 chr6 42067484 42067728 -140347514 - MIR SINE MIR -7 255 2 623 155 19 0 chr6 42067760 42067863 -140347379 - FLAM_A SINE Alu -3 139 35 452 193 41 181 chr6 42068215 42068491 -140346751 + L1ME LINE L1 5464 5707 -414 1439 106 4 2 chr6 42068643 42068888 -140346354 - AluSp SINE Alu -15 298 1 2176 91 0 7 chr6 42068902 42069214 -140346028 - AluY SINE Alu 0 310 1 493 208 79 0 chr6 42069320 42069421 -140345821 + FLAM_C SINE Alu 18 126 -17 433 285 125 32 chr6 42069454 42069834 -140345408 + L1ME4a LINE L1 5637 6057 -64 2092 146 0 19 chr6 42069834 42070149 -140345093 - AluSx SINE Alu -3 309 1 433 285 125 32 chr6 42070149 42070168 -140345074 + L1ME4a LINE L1 6057 6073 -48 888 157 31 0 chr6 42070516 42070675 -140344567 + AluSg/x SINE Alu 134 297 -13 2368 91 3 3 chr6 42070677 42070985 -140344257 + AluSx SINE Alu 1 308 -4 2543 51 0 3 chr6 42071084 42071379 -140343863 - AluY SINE Alu -17 294 1 656 157 0 119 chr6 42071477 42071611 -140343631 + FLAM_C SINE Alu 1 118 -15 2098 122 28 0 chr6 42071660 42071948 -140343294 - AluSx SINE Alu -16 296 1 1333 178 67 11 chr6 42072618 42072921 -140342321 + AluJb SINE Alu 2 319 0 2326 97 16 10 chr6 42073022 42073333 -140341909 + AluSq SINE Alu 1 313 0 523 203 68 31 chr6 42075671 42075834 -140339408 - L1MD3 LINE L1 -11 7984 7816 306 248 76 62 chr6 42075833 42075978 -140339264 - L1MD2 LINE L1 -127 6232 6086 * 1667 177 3 0 chr6 42076402 42076684 -140338558 + AluJo SINE Alu 2 284 -28 338 346 8 8 chr6 42076892 42077019 -140338223 - MIR3 SINE MIR -67 141 15 2148 86 0 61 chr6 42077150 42077325 -140337917 - AluSc SINE Alu -15 294 110 795 75 0 0 chr6 42077325 42077432 -140337810 + (TTC)n Simple_repeat Simple_repeat 2 108 0 2475 43 0 0 chr6 42077432 42077714 -140337528 - AluY SINE Alu -29 282 1 2148 86 0 61 chr6 42077714 42077850 -140337392 - AluSc SINE Alu -197 112 1 336 96 0 19 chr6 42077989 42078041 -140337201 + LTR67 LTR ERVL 3 53 -504 1560 151 33 19 chr6 42078134 42078430 -140336812 - AluJo SINE Alu 0 310 11 677 101 121 67 chr6 42078447 42078596 -140336646 - MER96B DNA MER1_type? -246 171 15 434 215 166 6 chr6 42078819 42078976 -140336266 - MER5A DNA MER1_type 0 189 4 667 211 122 0 chr6 42079051 42079207 -140336035 - MER96 DNA MER1_type 0 175 1 1059 172 0 0 chr6 42079256 42079419 -140335823 - AluJb SINE Alu -13 299 137 2197 109 0 0 chr6 42079446 42079755 -140335487 - AluSx SINE Alu 0 309 1 1609 185 26 0 chr6 42079773 42080043 -140335199 - AluJb SINE Alu -35 277 1 438 180 50 10 chr6 42080223 42080323 -140334919 + L1ME4a LINE L1 5989 6092 -29 736 206 83 40 chr6 42080344 42080620 -140334622 - HAL1 LINE L1 0 2507 2220 430 253 20 69 chr6 42080671 42080873 -140334369 - HAL1 LINE L1 -429 2078 1887 2655 113 33 88 chr6 42080873 42081235 -140334007 - MLT2C2 LTR ERVL 0 464 134 2120 106 35 0 chr6 42081235 42081517 -140333725 + AluSx SINE Alu 1 292 -20 2655 113 33 88 chr6 42081517 42081640 -140333602 - MLT2C2 LTR ERVL -330 134 6 189 0 0 0 chr6 42081674 42081695 -140333547 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1949 125 0 73 chr6 42081798 42081952 -140333290 + AluJb SINE Alu 3 122 -190 2353 96 0 0 chr6 42081952 42082244 -140332998 + AluSx SINE Alu 9 300 -12 1949 125 0 73 chr6 42082244 42082417 -140332825 + AluJb SINE Alu 122 306 -6 2299 84 0 19 chr6 42082478 42082789 -140332453 + AluY SINE Alu 1 305 -6 408 143 0 0 chr6 42083474 42083544 -140331698 + (CA)n Simple_repeat Simple_repeat 1 70 0 279 0 0 0 chr6 42083918 42083949 -140331293 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 516 16 0 0 chr6 42083948 42084009 -140331233 + (TC)n Simple_repeat Simple_repeat 1 61 0 493 214 92 8 chr6 42084026 42084157 -140331085 + MER103 DNA DNA 15 156 -10 619 304 22 11 chr6 42084396 42084580 -140330662 - MIR3 SINE MIR -7 201 16 2046 104 17 3 chr6 42084806 42085103 -140330139 - AluSq SINE Alu -8 305 5 360 249 191 32 chr6 42085235 42085424 -140329818 - L1MC4a LINE L1 -1682 6126 5908 235 205 33 131 chr6 42085433 42085502 -140329740 + MIR3 SINE MIR 92 145 -63 2186 83 0 0 chr6 42085502 42085790 -140329452 + AluY SINE Alu 9 296 -15 235 205 33 131 chr6 42085790 42085842 -140329400 + MIR3 SINE MIR 145 201 -7 2134 74 24 20 chr6 42086394 42086692 -140328550 - AluY SINE Alu -12 299 1 1092 98 0 0 chr6 42086693 42086836 -140328406 - AluSg SINE Alu -167 143 1 2076 118 0 0 chr6 42087840 42088129 -140327113 - AluSx SINE Alu -23 289 1 1682 154 7 17 chr6 42088141 42088433 -140326809 - AluJo SINE Alu -23 289 1 667 289 116 16 chr6 42088460 42088771 -140326471 + L2 LINE L2 1976 2317 -997 411 283 155 72 chr6 42088882 42089367 -140325875 + L2 LINE L2 1310 1864 -1450 2046 127 0 0 chr6 42089367 42089659 -140325583 + AluSg SINE Alu 1 292 -18 411 283 155 72 chr6 42089659 42089824 -140325418 + L2 LINE L2 1864 2014 -1300 2020 134 0 0 chr6 42090949 42091270 -140323972 + AluSg SINE Alu 1 310 0 1583 104 73 98 chr6 42092003 42092186 -140323056 - AluSq SINE Alu 0 313 140 2297 94 0 0 chr6 42092186 42092495 -140322747 - AluSg SINE Alu 0 310 2 1583 104 73 98 chr6 42092495 42092628 -140322614 - AluSq SINE Alu -173 140 5 2062 112 3 0 chr6 42092832 42093127 -140322115 + AluSq SINE Alu 1 296 -17 2123 88 0 3 chr6 42093130 42093449 -140321793 + AluY SINE Alu 1 318 0 23 33 0 0 chr6 42093469 42093499 -140321743 + AT_rich Low_complexity Low_complexity 1 30 0 293 338 58 0 chr6 42093501 42093640 -140321602 - MIR SINE MIR -6 256 110 657 266 47 0 chr6 42093651 42093751 -140321491 + MER69A DNA AcHobo 1 114 -2412 2121 129 0 0 chr6 42093751 42094060 -140321182 - AluSx SINE Alu -3 309 1 657 266 47 0 chr6 42094060 42094128 -140321114 + MER69A DNA AcHobo 114 177 0 2195 98 0 7 chr6 42094339 42094645 -140320597 - AluSq SINE Alu -9 304 1 634 260 6 39 chr6 42094695 42094876 -140320366 + MIR SINE MIR 5 179 -83 615 200 26 68 chr6 42094908 42095098 -140320144 - MER112 DNA MER1_type -7 253 72 1694 178 3 3 chr6 42095110 42095413 -140319829 + AluJb SINE Alu 1 303 -9 260 177 10 146 chr6 42095422 42095464 -140319778 - MER112 DNA MER1_type -177 83 60 2037 55 95 0 chr6 42095464 42095737 -140319505 - AluY SINE Alu -12 299 1 260 177 10 146 chr6 42095737 42095790 -140319452 - MER112 DNA MER1_type -200 60 1 293 250 0 0 chr6 42095790 42095862 -140319380 + MIR SINE MIR 191 262 0 2049 108 0 3 chr6 42095977 42096287 -140318955 - AluSx SINE Alu 0 309 1 350 260 114 0 chr6 42096296 42096419 -140318823 - L1ME4a LINE L1 -4 6117 5981 1892 131 3 10 chr6 42096431 42096728 -140318514 - AluSx SINE Alu -17 295 1 1978 90 0 21 chr6 42096912 42097246 -140317996 - AluY SINE Alu 0 328 1 276 259 152 56 chr6 42097246 42097282 -140317960 - L1MC4 LINE L1 -334 7708 7677 2009 125 7 0 chr6 42097282 42097579 -140317663 - AluSx SINE Alu -13 299 1 276 259 152 56 chr6 42097579 42097739 -140317503 - L1MC4 LINE L1 -365 7677 7493 2289 79 0 10 chr6 42097786 42098090 -140317152 + AluSg1 SINE Alu 1 301 -8 1132 111 72 0 chr6 42098207 42098387 -140316855 + MER30 DNA MER1_type 1 193 -37 234 62 0 0 chr6 42098568 42098600 -140316642 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 400 242 152 0 chr6 42098603 42098702 -140316540 - FLAM_A SINE Alu -19 114 1 1102 136 24 34 chr6 42098746 42098784 -140316458 + AluJo SINE Alu 84 121 -191 2382 61 3 0 chr6 42098784 42099080 -140316162 - AluSp SINE Alu -16 297 1 1102 136 24 34 chr6 42099080 42099247 -140315995 + AluJo SINE Alu 121 287 -25 1492 188 100 30 chr6 42099306 42099586 -140315656 - MLT1D LTR MaLR 0 505 264 1973 136 7 0 chr6 42099586 42099873 -140315369 - AluJb SINE Alu -15 297 9 1492 188 100 30 chr6 42099873 42099999 -140315243 - MLT1D LTR MaLR -241 264 148 817 205 74 0 chr6 42099886 42100076 -140315166 - MLT2C1 LTR ERVL -193 204 1 * 864 128 83 92 chr6 42100102 42100163 -140315079 + Tigger3(Golem) DNA MER2_type 1 61 -1170 2047 126 0 7 chr6 42100163 42100464 -140314778 + AluSx SINE Alu 1 299 -13 864 128 83 92 chr6 42100464 42100493 -140314749 + Tigger3(Golem) DNA MER2_type 61 89 -1142 2075 121 3 0 chr6 42100493 42100791 -140314451 + AluSq SINE Alu 1 299 -14 864 128 83 92 chr6 42100791 42100935 -140314307 + Tigger3(Golem) DNA MER2_type 89 204 -1027 1816 129 3 46 chr6 42100939 42101264 -140313978 + AluJo SINE Alu 2 312 0 2949 124 56 28 chr6 42101265 42101670 -140313572 + Tigger3(Golem) DNA MER2_type 2515 2938 -91 2177 115 3 0 chr6 42101670 42101974 -140313268 - AluSx SINE Alu -7 305 1 2949 124 56 28 chr6 42101974 42102068 -140313174 + Tigger3(Golem) DNA MER2_type 2938 3028 -1 315 0 0 0 chr6 42102069 42102104 -140313138 + (TG)n Simple_repeat Simple_repeat 2 36 0 2473 169 47 89 chr6 42102105 42102160 -140313082 - L1ME1 LINE L1 -122 6044 5988 1509 100 0 0 chr6 42102160 42102382 -140312860 + AluSq SINE Alu 87 308 0 2473 169 47 89 chr6 42102382 42102945 -140312297 - L1ME1 LINE L1 -178 5988 5451 449 225 11 58 chr6 42103015 42103206 -140312036 - L1MC5 LINE L1 -781 7180 6999 1962 129 7 10 chr6 42103260 42103562 -140311680 - AluSx SINE Alu -11 301 1 1324 165 120 0 chr6 42103567 42103833 -140311409 - AluJb SINE Alu -1 311 14 2092 108 10 0 chr6 42103915 42104211 -140311031 + AluSg SINE Alu 1 299 -11 1969 130 10 0 chr6 42104287 42104601 -140310641 + AluSx SINE Alu 1 312 0 2063 110 3 3 chr6 42104935 42105234 -140310008 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr6 42105431 42105452 -140309790 + AT_rich Low_complexity Low_complexity 1 21 0 2101 104 3 16 chr6 42105671 42105978 -140309264 - AluSg SINE Alu -7 303 1 580 207 76 22 chr6 42106654 42106836 -140308406 + MIR SINE MIR 12 193 -62 204 158 0 0 chr6 42106836 42106874 -140308368 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 197 0 0 chr6 42106878 42106944 -140308298 + GA-rich Low_complexity Low_complexity 1 66 0 2169 96 0 7 chr6 42106976 42107278 -140307964 + AluSx SINE Alu 1 300 -12 2099 138 0 0 chr6 42107288 42107600 -140307642 + AluSx SINE Alu 1 312 0 1637 171 12 40 chr6 42108251 42108572 -140306670 - AluSx SINE Alu 0 312 1 336 215 41 132 chr6 42108607 42108652 -140306590 + MIR SINE MIR 27 74 -188 2332 64 3 0 chr6 42108652 42108948 -140306294 - AluSp SINE Alu -16 297 1 336 215 41 132 chr6 42108948 42109023 -140306219 + MIR SINE MIR 74 136 -126 403 154 0 3 chr6 42109383 42109453 -140305789 + AluJb SINE Alu 1 55 -247 1945 131 7 0 chr6 42109453 42109750 -140305492 + AluSx SINE Alu 1 299 -13 1687 157 0 0 chr6 42109750 42110016 -140305226 + AluJb SINE Alu 44 310 -2 186 191 0 0 chr6 42110113 42110155 -140305087 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 2161 112 0 3 chr6 42110232 42110527 -140304715 + AluSq SINE Alu 2 295 -18 1620 134 7 60 chr6 42110557 42110855 -140304387 + AluJb SINE Alu 1 282 -30 180 0 0 0 chr6 42110859 42110879 -140304363 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2140 66 0 72 chr6 42111211 42111544 -140303698 + AluY SINE Alu 1 309 -2 2348 67 0 10 chr6 42111719 42112032 -140303210 - AluY SINE Alu -1 310 1 1992 105 10 30 chr6 42112069 42112373 -140302869 + AluSx SINE Alu 1 298 -14 234 158 59 50 chr6 42112374 42112475 -140302767 + L1MC5 LINE L1 7586 7687 -274 2194 104 3 0 chr6 42112548 42112846 -140302396 - AluSx SINE Alu -12 300 2 1899 113 0 31 chr6 42112847 42113138 -140302104 - AluSx SINE Alu -30 282 1 899 131 141 106 chr6 42113290 42113332 -140301910 - MER33 DNA MER1_type -2261 324 285 493 215 222 0 chr6 42113332 42113467 -140301775 - FAM SINE Alu -10 165 1 899 131 141 106 chr6 42113467 42113525 -140301717 - MER33 DNA MER1_type -2300 285 231 1699 153 35 0 chr6 42113525 42113812 -140301430 - AluSx SINE Alu -15 297 1 1785 110 96 0 chr6 42113816 42114088 -140301154 - AluSx SINE Alu -14 298 1 899 131 141 106 chr6 42114088 42114112 -140301130 - MER33 DNA MER1_type -2356 229 207 1778 167 0 0 chr6 42114112 42114425 -140300817 - AluJb SINE Alu 0 313 1 899 131 141 106 chr6 42114425 42114604 -140300638 - MER33 DNA MER1_type -2378 207 2 555 283 26 7 chr6 42114605 42114757 -140300485 + LTR33 LTR ERVL 26 180 -341 392 167 167 42 chr6 42114921 42115017 -140300225 + LTR33 LTR ERVL 410 517 -4 2147 83 0 45 chr6 42115067 42115242 -140300000 - AluSx SINE Alu -14 298 142 2056 103 3 0 chr6 42115242 42115532 -140299710 - AluY SINE Alu -20 291 1 2147 83 0 45 chr6 42115532 42115668 -140299574 - AluSx SINE Alu -170 142 1 1849 112 12 0 chr6 42115748 42116032 -140299210 - AluSx SINE Alu 0 309 23 1045 195 51 31 chr6 42116042 42116298 -140298944 - AluJo SINE Alu -14 298 38 2061 133 0 0 chr6 42116316 42116625 -140298617 + AluSc SINE Alu 1 309 0 1610 171 3 32 chr6 42116669 42116985 -140298257 - AluJb SINE Alu -4 308 2 40 49 0 0 chr6 42116985 42117046 -140298196 + AT_rich Low_complexity Low_complexity 1 61 0 1880 123 3 3 chr6 42117049 42117356 -140297886 + AluSx SINE Alu 1 307 0 633 133 0 9 chr6 42117485 42117590 -140297652 + FLAM_C SINE Alu 35 138 -5 1045 102 80 6 chr6 42117700 42117876 -140297366 + MER2 DNA MER2_type 20 208 -137 2240 99 0 0 chr6 42117972 42118275 -140296967 + AluSx SINE Alu 1 303 -9 1889 110 0 22 chr6 42118811 42119084 -140296158 + AluSx SINE Alu 6 272 -40 225 0 0 0 chr6 42119084 42119109 -140296133 + (CAA)n Simple_repeat Simple_repeat 3 27 0 198 0 0 0 chr6 42119371 42119393 -140295849 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1393 172 20 4 chr6 42119427 42119677 -140295565 - AluSq SINE Alu -59 254 1 421 179 167 0 chr6 42119751 42119829 -140295413 + AluJ/FLAM SINE Alu 1 91 -221 847 195 146 4 chr6 42119868 42120094 -140295148 + AluJo SINE Alu 47 304 -8 1575 153 3 14 chr6 42120094 42120388 -140294854 + AluJb SINE Alu 1 291 -21 195 289 105 13 chr6 42120404 42120480 -140294762 - L2 LINE L2 -12 3301 3219 280 293 86 43 chr6 42120519 42120635 -140294607 - MIR SINE MIR -121 141 21 188 103 63 10 chr6 42120757 42120799 -140294443 - MIR SINE MIR -50 158 106 2320 90 0 0 chr6 42120917 42121229 -140294013 + AluSx SINE Alu 1 312 0 1911 65 12 4 chr6 42121309 42121556 -140293686 - AluSq SINE Alu -64 249 1 1649 184 81 28 chr6 42123396 42123793 -140291449 - L1MB5 LINE L1 -58 6116 5699 180 0 0 0 chr6 42123923 42123943 -140291299 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2048 83 3 3 chr6 42123947 42124237 -140291005 - AluSg SINE Alu -20 290 1 1841 130 7 23 chr6 42125112 42125420 -140289822 - AluSx SINE Alu -9 303 1 36 40 0 0 chr6 42125846 42125896 -140289346 + AT_rich Low_complexity Low_complexity 1 50 0 661 139 0 0 chr6 42125907 42126008 -140289234 - AluJ/FLAM SINE Alu -210 102 2 1870 151 0 0 chr6 42126405 42126696 -140288546 - AluSg SINE Alu -19 291 1 369 62 0 0 chr6 42128993 42129041 -140286201 + (T)n Simple_repeat Simple_repeat 1 48 0 1349 204 36 4 chr6 42129379 42129653 -140285589 - AluJo SINE Alu -24 288 6 207 69 0 0 chr6 42129945 42129974 -140285268 + (T)n Simple_repeat Simple_repeat 1 29 0 632 202 0 47 chr6 42132337 42132466 -140282776 + AluSq/x SINE Alu 2 124 -189 1796 159 10 0 chr6 42133222 42133518 -140281724 + AluSq SINE Alu 1 299 -14 1220 168 47 0 chr6 42134073 42134287 -140280955 - AluJo SINE Alu -80 232 11 2393 84 0 0 chr6 42134552 42134849 -140280393 - AluSx SINE Alu -15 297 1 2180 108 3 13 chr6 42135232 42135538 -140279704 - AluSc SINE Alu -6 303 1 465 177 150 35 chr6 42135544 42135657 -140279585 - AluJb SINE Alu -185 127 2 2052 108 38 0 chr6 42136181 42136469 -140278773 + AluSp SINE Alu 1 299 -14 1844 141 22 4 chr6 42136709 42136985 -140278257 + AluJb SINE Alu 29 309 -3 181 385 58 0 chr6 42137190 42137294 -140277948 - MIR SINE MIR -96 166 57 270 243 214 19 chr6 42137325 42137428 -140277814 - MIR3 SINE MIR -25 183 61 605 281 101 17 chr6 42137470 42137708 -140277534 + MIR SINE MIR 2 259 -3 204 310 169 28 chr6 42138013 42138155 -140277087 + MIR SINE MIR 11 172 -90 281 51 51 0 chr6 42138175 42138214 -140277028 - MER5B DNA MER1_type -13 165 125 1794 113 0 51 chr6 42138225 42138500 -140276742 + AluSx SINE Alu 1 261 -51 954 226 108 24 chr6 42138571 42138951 -140276291 + LTR56 LTR ERV1 9 420 -25 256 220 192 56 chr6 42139423 42139637 -140275605 - MER20B DNA MER1_type -1 782 540 2124 144 0 7 chr6 42139641 42139946 -140275296 + AluSx SINE Alu 1 303 -9 7792 109 50 20 chr6 42139967 42140183 -140275059 + Tigger1 DNA MER2_type 863 1071 -1347 1276 170 99 42 chr6 42140183 42140466 -140274776 - AluJb SINE Alu -3 299 1 7792 109 50 20 chr6 42140466 42140628 -140274614 + Tigger1 DNA MER2_type 1071 1227 -1191 2387 87 3 7 chr6 42140628 42140938 -140274304 - AluSx SINE Alu -3 309 1 7792 109 50 20 chr6 42140938 42141864 -140273378 + Tigger1 DNA MER2_type 1227 2207 -211 1386 158 19 0 chr6 42141864 42141944 -140273298 - AluJo SINE Alu -99 213 136 2460 93 0 0 chr6 42141944 42142245 -140272997 - AluSx SINE Alu -11 301 1 1386 158 19 0 chr6 42142245 42142373 -140272869 - AluJo SINE Alu -176 136 1 601 120 232 0 chr6 42142375 42142517 -140272725 + Tigger1 DNA MER2_type 2243 2417 -1 2141 111 14 14 chr6 42142571 42142868 -140272374 - AluSx SINE Alu -15 297 1 232 242 199 43 chr6 42142920 42143038 -140272204 - MER20B DNA MER1_type -591 192 41 1809 140 58 14 chr6 42143038 42143331 -140271911 + AluJo SINE Alu 1 306 -6 232 242 199 43 chr6 42143331 42143373 -140271869 - MER20B DNA MER1_type -742 41 7 250 207 164 86 chr6 42143469 42143609 -140271633 - MIR SINE MIR 0 262 112 259 136 23 0 chr6 42143794 42143838 -140271404 - MIR3 SINE MIR -6 202 158 2271 114 3 9 chr6 42143855 42144034 -140271208 - AluSq SINE Alu 0 313 135 2584 71 0 3 chr6 42144034 42144345 -140270897 - AluY SINE Alu -1 310 1 2271 114 3 9 chr6 42144345 42144480 -140270762 - AluSq SINE Alu -178 135 1 244 335 89 6 chr6 42144887 42145045 -140270197 - MIR3 SINE MIR -20 188 18 2072 107 43 0 chr6 42145784 42146064 -140269178 - AluSx SINE Alu -19 293 2 2393 76 3 7 chr6 42146093 42146395 -140268847 + AluY SINE Alu 1 301 -10 351 300 36 21 chr6 42146677 42146817 -140268425 + MIR SINE MIR 103 244 -18 353 270 127 24 chr6 42147043 42147169 -140268073 - MIR3 SINE MIR -40 168 30 2130 115 3 7 chr6 42147466 42147753 -140267489 - AluSx SINE Alu -13 299 14 255 200 18 0 chr6 42147932 42147987 -140267255 + AluJb SINE Alu 81 136 -166 2020 134 3 26 chr6 42147988 42148133 -140267109 + AluJb SINE Alu 1 148 -164 2471 92 0 0 chr6 42148133 42148439 -140266803 + AluSg SINE Alu 1 306 -4 2020